14b9ad928SBarry Smith 24b9ad928SBarry Smith /* -------------------------------------------------------------------- 34b9ad928SBarry Smith 45a46d3faSBarry Smith This file implements a Jacobi preconditioner in PETSc as part of PC. 55a46d3faSBarry Smith You can use this as a starting point for implementing your own 65a46d3faSBarry Smith preconditioner that is not provided with PETSc. (You might also consider 75a46d3faSBarry Smith just using PCSHELL) 84b9ad928SBarry Smith 94b9ad928SBarry Smith The following basic routines are required for each preconditioner. 104b9ad928SBarry Smith PCCreate_XXX() - Creates a preconditioner context 114b9ad928SBarry Smith PCSetFromOptions_XXX() - Sets runtime options 124b9ad928SBarry Smith PCApply_XXX() - Applies the preconditioner 134b9ad928SBarry Smith PCDestroy_XXX() - Destroys the preconditioner context 144b9ad928SBarry Smith where the suffix "_XXX" denotes a particular implementation, in 154b9ad928SBarry Smith this case we use _Jacobi (e.g., PCCreate_Jacobi, PCApply_Jacobi). 164b9ad928SBarry Smith These routines are actually called via the common user interface 174b9ad928SBarry Smith routines PCCreate(), PCSetFromOptions(), PCApply(), and PCDestroy(), 184b9ad928SBarry Smith so the application code interface remains identical for all 194b9ad928SBarry Smith preconditioners. 204b9ad928SBarry Smith 214b9ad928SBarry Smith Another key routine is: 224b9ad928SBarry Smith PCSetUp_XXX() - Prepares for the use of a preconditioner 234b9ad928SBarry Smith by setting data structures and options. The interface routine PCSetUp() 244b9ad928SBarry Smith is not usually called directly by the user, but instead is called by 254b9ad928SBarry Smith PCApply() if necessary. 264b9ad928SBarry Smith 274b9ad928SBarry Smith Additional basic routines are: 284b9ad928SBarry Smith PCView_XXX() - Prints details of runtime options that 294b9ad928SBarry Smith have actually been used. 304b9ad928SBarry Smith These are called by application codes via the interface routines 314b9ad928SBarry Smith PCView(). 324b9ad928SBarry Smith 334b9ad928SBarry Smith The various types of solvers (preconditioners, Krylov subspace methods, 344b9ad928SBarry Smith nonlinear solvers, timesteppers) are all organized similarly, so the 354b9ad928SBarry Smith above description applies to these categories also. One exception is 364b9ad928SBarry Smith that the analogues of PCApply() for these components are KSPSolve(), 374b9ad928SBarry Smith SNESSolve(), and TSSolve(). 384b9ad928SBarry Smith 394b9ad928SBarry Smith Additional optional functionality unique to preconditioners is left and 404b9ad928SBarry Smith right symmetric preconditioner application via PCApplySymmetricLeft() 414b9ad928SBarry Smith and PCApplySymmetricRight(). The Jacobi implementation is 424b9ad928SBarry Smith PCApplySymmetricLeftOrRight_Jacobi(). 434b9ad928SBarry Smith 444b9ad928SBarry Smith -------------------------------------------------------------------- */ 454b9ad928SBarry Smith 464b9ad928SBarry Smith /* 474b9ad928SBarry Smith Include files needed for the Jacobi preconditioner: 484b9ad928SBarry Smith pcimpl.h - private include file intended for use by all preconditioners 494b9ad928SBarry Smith */ 504b9ad928SBarry Smith 51af0996ceSBarry Smith #include <petsc/private/pcimpl.h> /*I "petscpc.h" I*/ 524b9ad928SBarry Smith 530a545947SLisandro Dalcin const char *const PCJacobiTypes[] = {"DIAGONAL", "ROWMAX", "ROWSUM", "PCJacobiType", "PC_JACOBI_", NULL}; 54baa89ecbSBarry Smith 554b9ad928SBarry Smith /* 564b9ad928SBarry Smith Private context (data structure) for the Jacobi preconditioner. 574b9ad928SBarry Smith */ 584b9ad928SBarry Smith typedef struct { 592fa5cd67SKarl Rupp Vec diag; /* vector containing the reciprocals of the diagonal elements of the preconditioner matrix */ 604b9ad928SBarry Smith Vec diagsqrt; /* vector containing the reciprocals of the square roots of 614b9ad928SBarry Smith the diagonal elements of the preconditioner matrix (used 624b9ad928SBarry Smith only for symmetric preconditioner application) */ 63baa89ecbSBarry Smith PetscBool userowmax; /* set with PCJacobiSetType() */ 64ace3abfcSBarry Smith PetscBool userowsum; 65ace3abfcSBarry Smith PetscBool useabs; /* use the absolute values of the diagonal entries */ 6667ed0f3bSStefano Zampini PetscBool fixdiag; /* fix zero diagonal terms */ 674b9ad928SBarry Smith } PC_Jacobi; 684b9ad928SBarry Smith 699371c9d4SSatish Balay static PetscErrorCode PCJacobiSetType_Jacobi(PC pc, PCJacobiType type) { 70baa89ecbSBarry Smith PC_Jacobi *j = (PC_Jacobi *)pc->data; 714b9ad928SBarry Smith 724b9ad928SBarry Smith PetscFunctionBegin; 73baa89ecbSBarry Smith j->userowmax = PETSC_FALSE; 74baa89ecbSBarry Smith j->userowsum = PETSC_FALSE; 75baa89ecbSBarry Smith if (type == PC_JACOBI_ROWMAX) { 764b9ad928SBarry Smith j->userowmax = PETSC_TRUE; 77baa89ecbSBarry Smith } else if (type == PC_JACOBI_ROWSUM) { 78baa89ecbSBarry Smith j->userowsum = PETSC_TRUE; 79baa89ecbSBarry Smith } 804b9ad928SBarry Smith PetscFunctionReturn(0); 814b9ad928SBarry Smith } 824b9ad928SBarry Smith 839371c9d4SSatish Balay static PetscErrorCode PCJacobiGetType_Jacobi(PC pc, PCJacobiType *type) { 84baa89ecbSBarry Smith PC_Jacobi *j = (PC_Jacobi *)pc->data; 8586697f06SMatthew Knepley 8686697f06SMatthew Knepley PetscFunctionBegin; 87baa89ecbSBarry Smith if (j->userowmax) { 88baa89ecbSBarry Smith *type = PC_JACOBI_ROWMAX; 89baa89ecbSBarry Smith } else if (j->userowsum) { 90baa89ecbSBarry Smith *type = PC_JACOBI_ROWSUM; 91baa89ecbSBarry Smith } else { 92baa89ecbSBarry Smith *type = PC_JACOBI_DIAGONAL; 93baa89ecbSBarry Smith } 9486697f06SMatthew Knepley PetscFunctionReturn(0); 9586697f06SMatthew Knepley } 9686697f06SMatthew Knepley 979371c9d4SSatish Balay static PetscErrorCode PCJacobiSetUseAbs_Jacobi(PC pc, PetscBool flg) { 98baa89ecbSBarry Smith PC_Jacobi *j = (PC_Jacobi *)pc->data; 99cd47f5d9SBarry Smith 100cd47f5d9SBarry Smith PetscFunctionBegin; 101baa89ecbSBarry Smith j->useabs = flg; 102baa89ecbSBarry Smith PetscFunctionReturn(0); 103baa89ecbSBarry Smith } 104baa89ecbSBarry Smith 1059371c9d4SSatish Balay static PetscErrorCode PCJacobiGetUseAbs_Jacobi(PC pc, PetscBool *flg) { 106baa89ecbSBarry Smith PC_Jacobi *j = (PC_Jacobi *)pc->data; 107baa89ecbSBarry Smith 108baa89ecbSBarry Smith PetscFunctionBegin; 109baa89ecbSBarry Smith *flg = j->useabs; 110cd47f5d9SBarry Smith PetscFunctionReturn(0); 111cd47f5d9SBarry Smith } 112cd47f5d9SBarry Smith 1139371c9d4SSatish Balay static PetscErrorCode PCJacobiSetFixDiagonal_Jacobi(PC pc, PetscBool flg) { 11467ed0f3bSStefano Zampini PC_Jacobi *j = (PC_Jacobi *)pc->data; 11567ed0f3bSStefano Zampini 11667ed0f3bSStefano Zampini PetscFunctionBegin; 11767ed0f3bSStefano Zampini j->fixdiag = flg; 11867ed0f3bSStefano Zampini PetscFunctionReturn(0); 11967ed0f3bSStefano Zampini } 12067ed0f3bSStefano Zampini 1219371c9d4SSatish Balay static PetscErrorCode PCJacobiGetFixDiagonal_Jacobi(PC pc, PetscBool *flg) { 12267ed0f3bSStefano Zampini PC_Jacobi *j = (PC_Jacobi *)pc->data; 12367ed0f3bSStefano Zampini 12467ed0f3bSStefano Zampini PetscFunctionBegin; 12567ed0f3bSStefano Zampini *flg = j->fixdiag; 12667ed0f3bSStefano Zampini PetscFunctionReturn(0); 12767ed0f3bSStefano Zampini } 12867ed0f3bSStefano Zampini 1294b9ad928SBarry Smith /* 1304b9ad928SBarry Smith PCSetUp_Jacobi - Prepares for the use of the Jacobi preconditioner 1314b9ad928SBarry Smith by setting data structures and options. 1324b9ad928SBarry Smith 1334b9ad928SBarry Smith Input Parameter: 1344b9ad928SBarry Smith . pc - the preconditioner context 1354b9ad928SBarry Smith 1364b9ad928SBarry Smith Application Interface Routine: PCSetUp() 1374b9ad928SBarry Smith 138f1580f4eSBarry Smith Note: 1394b9ad928SBarry Smith The interface routine PCSetUp() is not usually called directly by 1404b9ad928SBarry Smith the user, but instead is called by PCApply() if necessary. 1414b9ad928SBarry Smith */ 1429371c9d4SSatish Balay static PetscErrorCode PCSetUp_Jacobi(PC pc) { 1434b9ad928SBarry Smith PC_Jacobi *jac = (PC_Jacobi *)pc->data; 1444b9ad928SBarry Smith Vec diag, diagsqrt; 145cd47f5d9SBarry Smith PetscInt n, i; 1464b9ad928SBarry Smith PetscScalar *x; 147ace3abfcSBarry Smith PetscBool zeroflag = PETSC_FALSE; 1484b9ad928SBarry Smith 1494b9ad928SBarry Smith PetscFunctionBegin; 1504b9ad928SBarry Smith /* 1514b9ad928SBarry Smith For most preconditioners the code would begin here something like 1524b9ad928SBarry Smith 1534b9ad928SBarry Smith if (pc->setupcalled == 0) { allocate space the first time this is ever called 1549566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(pc->mat,&jac->diag)); 1554b9ad928SBarry Smith } 1564b9ad928SBarry Smith 1574b9ad928SBarry Smith But for this preconditioner we want to support use of both the matrix' diagonal 1584b9ad928SBarry Smith elements (for left or right preconditioning) and square root of diagonal elements 1594b9ad928SBarry Smith (for symmetric preconditioning). Hence we do not allocate space here, since we 1604b9ad928SBarry Smith don't know at this point which will be needed (diag and/or diagsqrt) until the user 1614b9ad928SBarry Smith applies the preconditioner, and we don't want to allocate BOTH unless we need 1624b9ad928SBarry Smith them both. Thus, the diag and diagsqrt are allocated in PCSetUp_Jacobi_NonSymmetric() 1634b9ad928SBarry Smith and PCSetUp_Jacobi_Symmetric(), respectively. 1644b9ad928SBarry Smith */ 1654b9ad928SBarry Smith 1664b9ad928SBarry Smith /* 1674b9ad928SBarry Smith Here we set up the preconditioner; that is, we copy the diagonal values from 1684b9ad928SBarry Smith the matrix and put them into a format to make them quick to apply as a preconditioner. 1694b9ad928SBarry Smith */ 1704b9ad928SBarry Smith diag = jac->diag; 1714b9ad928SBarry Smith diagsqrt = jac->diagsqrt; 1724b9ad928SBarry Smith 1734b9ad928SBarry Smith if (diag) { 174b94d7dedSBarry Smith PetscBool isset, isspd; 17567ed0f3bSStefano Zampini 1764b9ad928SBarry Smith if (jac->userowmax) { 1779566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(pc->pmat, diag, NULL)); 17886697f06SMatthew Knepley } else if (jac->userowsum) { 1799566063dSJacob Faibussowitsch PetscCall(MatGetRowSum(pc->pmat, diag)); 1804b9ad928SBarry Smith } else { 1819566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(pc->pmat, diag)); 1824b9ad928SBarry Smith } 1839566063dSJacob Faibussowitsch PetscCall(VecReciprocal(diag)); 1841baa6e33SBarry Smith if (jac->useabs) PetscCall(VecAbs(diag)); 185b94d7dedSBarry Smith PetscCall(MatIsSPDKnown(pc->pmat, &isset, &isspd)); 186b94d7dedSBarry Smith if (jac->fixdiag && (!isset || !isspd)) { 1879566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(diag, &n)); 1889566063dSJacob Faibussowitsch PetscCall(VecGetArray(diag, &x)); 1894b9ad928SBarry Smith for (i = 0; i < n; i++) { 1904b9ad928SBarry Smith if (x[i] == 0.0) { 1914b9ad928SBarry Smith x[i] = 1.0; 192cd47f5d9SBarry Smith zeroflag = PETSC_TRUE; 1934b9ad928SBarry Smith } 1944b9ad928SBarry Smith } 1959566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(diag, &x)); 1964b9ad928SBarry Smith } 19767ed0f3bSStefano Zampini } 1984b9ad928SBarry Smith if (diagsqrt) { 1994b9ad928SBarry Smith if (jac->userowmax) { 2009566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(pc->pmat, diagsqrt, NULL)); 20186697f06SMatthew Knepley } else if (jac->userowsum) { 2029566063dSJacob Faibussowitsch PetscCall(MatGetRowSum(pc->pmat, diagsqrt)); 2034b9ad928SBarry Smith } else { 2049566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(pc->pmat, diagsqrt)); 2054b9ad928SBarry Smith } 2069566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(diagsqrt, &n)); 2079566063dSJacob Faibussowitsch PetscCall(VecGetArray(diagsqrt, &x)); 2084b9ad928SBarry Smith for (i = 0; i < n; i++) { 2098f1a2a5eSBarry Smith if (x[i] != 0.0) x[i] = 1.0 / PetscSqrtReal(PetscAbsScalar(x[i])); 2104b9ad928SBarry Smith else { 2114b9ad928SBarry Smith x[i] = 1.0; 212cd47f5d9SBarry Smith zeroflag = PETSC_TRUE; 2134b9ad928SBarry Smith } 2144b9ad928SBarry Smith } 2159566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(diagsqrt, &x)); 2164b9ad928SBarry Smith } 21748a46eb9SPierre Jolivet if (zeroflag) PetscCall(PetscInfo(pc, "Zero detected in diagonal of matrix, using 1 at those locations\n")); 2184b9ad928SBarry Smith PetscFunctionReturn(0); 2194b9ad928SBarry Smith } 220f1580f4eSBarry Smith 2214b9ad928SBarry Smith /* 2224b9ad928SBarry Smith PCSetUp_Jacobi_Symmetric - Allocates the vector needed to store the 2234b9ad928SBarry Smith inverse of the square root of the diagonal entries of the matrix. This 2244b9ad928SBarry Smith is used for symmetric application of the Jacobi preconditioner. 2254b9ad928SBarry Smith 2264b9ad928SBarry Smith Input Parameter: 2274b9ad928SBarry Smith . pc - the preconditioner context 2284b9ad928SBarry Smith */ 2299371c9d4SSatish Balay static PetscErrorCode PCSetUp_Jacobi_Symmetric(PC pc) { 2304b9ad928SBarry Smith PC_Jacobi *jac = (PC_Jacobi *)pc->data; 2314b9ad928SBarry Smith 2324b9ad928SBarry Smith PetscFunctionBegin; 2339566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(pc->pmat, &jac->diagsqrt, NULL)); 2349566063dSJacob Faibussowitsch PetscCall(PCSetUp_Jacobi(pc)); 2354b9ad928SBarry Smith PetscFunctionReturn(0); 2364b9ad928SBarry Smith } 237f1580f4eSBarry Smith 2384b9ad928SBarry Smith /* 2394b9ad928SBarry Smith PCSetUp_Jacobi_NonSymmetric - Allocates the vector needed to store the 2404b9ad928SBarry Smith inverse of the diagonal entries of the matrix. This is used for left of 2414b9ad928SBarry Smith right application of the Jacobi preconditioner. 2424b9ad928SBarry Smith 2434b9ad928SBarry Smith Input Parameter: 2444b9ad928SBarry Smith . pc - the preconditioner context 2454b9ad928SBarry Smith */ 2469371c9d4SSatish Balay static PetscErrorCode PCSetUp_Jacobi_NonSymmetric(PC pc) { 2474b9ad928SBarry Smith PC_Jacobi *jac = (PC_Jacobi *)pc->data; 2484b9ad928SBarry Smith 2494b9ad928SBarry Smith PetscFunctionBegin; 2509566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(pc->pmat, &jac->diag, NULL)); 2519566063dSJacob Faibussowitsch PetscCall(PCSetUp_Jacobi(pc)); 2524b9ad928SBarry Smith PetscFunctionReturn(0); 2534b9ad928SBarry Smith } 254f1580f4eSBarry Smith 2554b9ad928SBarry Smith /* 2564b9ad928SBarry Smith PCApply_Jacobi - Applies the Jacobi preconditioner to a vector. 2574b9ad928SBarry Smith 2584b9ad928SBarry Smith Input Parameters: 2594b9ad928SBarry Smith . pc - the preconditioner context 2604b9ad928SBarry Smith . x - input vector 2614b9ad928SBarry Smith 2624b9ad928SBarry Smith Output Parameter: 2634b9ad928SBarry Smith . y - output vector 2644b9ad928SBarry Smith 2654b9ad928SBarry Smith Application Interface Routine: PCApply() 2664b9ad928SBarry Smith */ 2679371c9d4SSatish Balay static PetscErrorCode PCApply_Jacobi(PC pc, Vec x, Vec y) { 2684b9ad928SBarry Smith PC_Jacobi *jac = (PC_Jacobi *)pc->data; 2694b9ad928SBarry Smith 2704b9ad928SBarry Smith PetscFunctionBegin; 27148a46eb9SPierre Jolivet if (!jac->diag) PetscCall(PCSetUp_Jacobi_NonSymmetric(pc)); 2729566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(y, x, jac->diag)); 2734b9ad928SBarry Smith PetscFunctionReturn(0); 2744b9ad928SBarry Smith } 275f1580f4eSBarry Smith 2764b9ad928SBarry Smith /* 2774b9ad928SBarry Smith PCApplySymmetricLeftOrRight_Jacobi - Applies the left or right part of a 2784b9ad928SBarry Smith symmetric preconditioner to a vector. 2794b9ad928SBarry Smith 2804b9ad928SBarry Smith Input Parameters: 2814b9ad928SBarry Smith . pc - the preconditioner context 2824b9ad928SBarry Smith . x - input vector 2834b9ad928SBarry Smith 2844b9ad928SBarry Smith Output Parameter: 2854b9ad928SBarry Smith . y - output vector 2864b9ad928SBarry Smith 2874b9ad928SBarry Smith Application Interface Routines: PCApplySymmetricLeft(), PCApplySymmetricRight() 2884b9ad928SBarry Smith */ 2899371c9d4SSatish Balay static PetscErrorCode PCApplySymmetricLeftOrRight_Jacobi(PC pc, Vec x, Vec y) { 2904b9ad928SBarry Smith PC_Jacobi *jac = (PC_Jacobi *)pc->data; 2914b9ad928SBarry Smith 2924b9ad928SBarry Smith PetscFunctionBegin; 29348a46eb9SPierre Jolivet if (!jac->diagsqrt) PetscCall(PCSetUp_Jacobi_Symmetric(pc)); 2949566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(y, x, jac->diagsqrt)); 2954b9ad928SBarry Smith PetscFunctionReturn(0); 2964b9ad928SBarry Smith } 29767ed0f3bSStefano Zampini 2989371c9d4SSatish Balay static PetscErrorCode PCReset_Jacobi(PC pc) { 299a06653b4SBarry Smith PC_Jacobi *jac = (PC_Jacobi *)pc->data; 300a06653b4SBarry Smith 301a06653b4SBarry Smith PetscFunctionBegin; 3029566063dSJacob Faibussowitsch PetscCall(VecDestroy(&jac->diag)); 3039566063dSJacob Faibussowitsch PetscCall(VecDestroy(&jac->diagsqrt)); 304a06653b4SBarry Smith PetscFunctionReturn(0); 305a06653b4SBarry Smith } 306a06653b4SBarry Smith 3074b9ad928SBarry Smith /* 3084b9ad928SBarry Smith PCDestroy_Jacobi - Destroys the private context for the Jacobi preconditioner 3094b9ad928SBarry Smith that was created with PCCreate_Jacobi(). 3104b9ad928SBarry Smith 3114b9ad928SBarry Smith Input Parameter: 3124b9ad928SBarry Smith . pc - the preconditioner context 3134b9ad928SBarry Smith 3144b9ad928SBarry Smith Application Interface Routine: PCDestroy() 3154b9ad928SBarry Smith */ 3169371c9d4SSatish Balay static PetscErrorCode PCDestroy_Jacobi(PC pc) { 3174b9ad928SBarry Smith PetscFunctionBegin; 3189566063dSJacob Faibussowitsch PetscCall(PCReset_Jacobi(pc)); 3199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCJacobiSetType_C", NULL)); 3209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCJacobiGetType_C", NULL)); 3219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCJacobiSetUseAbs_C", NULL)); 3229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCJacobiGetUseAbs_C", NULL)); 3239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCJacobiSetFixDiagonal_C", NULL)); 3249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCJacobiGetFixDiagonal_C", NULL)); 3254b9ad928SBarry Smith 3264b9ad928SBarry Smith /* 3274b9ad928SBarry Smith Free the private data structure that was hanging off the PC 3284b9ad928SBarry Smith */ 3299566063dSJacob Faibussowitsch PetscCall(PetscFree(pc->data)); 3304b9ad928SBarry Smith PetscFunctionReturn(0); 3314b9ad928SBarry Smith } 3324b9ad928SBarry Smith 3339371c9d4SSatish Balay static PetscErrorCode PCSetFromOptions_Jacobi(PC pc, PetscOptionItems *PetscOptionsObject) { 3344b9ad928SBarry Smith PC_Jacobi *jac = (PC_Jacobi *)pc->data; 335baa89ecbSBarry Smith PetscBool flg; 336baa89ecbSBarry Smith PCJacobiType deflt, type; 3374b9ad928SBarry Smith 3384b9ad928SBarry Smith PetscFunctionBegin; 3399566063dSJacob Faibussowitsch PetscCall(PCJacobiGetType(pc, &deflt)); 340d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "Jacobi options"); 3419566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum("-pc_jacobi_type", "How to construct diagonal matrix", "PCJacobiSetType", PCJacobiTypes, (PetscEnum)deflt, (PetscEnum *)&type, &flg)); 3421baa6e33SBarry Smith if (flg) PetscCall(PCJacobiSetType(pc, type)); 3439566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-pc_jacobi_abs", "Use absolute values of diagonal entries", "PCJacobiSetUseAbs", jac->useabs, &jac->useabs, NULL)); 3449566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-pc_jacobi_fixdiagonal", "Fix null terms on diagonal", "PCJacobiSetFixDiagonal", jac->fixdiag, &jac->fixdiag, NULL)); 345d0609cedSBarry Smith PetscOptionsHeadEnd(); 3464b9ad928SBarry Smith PetscFunctionReturn(0); 3474b9ad928SBarry Smith } 3484b9ad928SBarry Smith 3499371c9d4SSatish Balay static PetscErrorCode PCView_Jacobi(PC pc, PetscViewer viewer) { 350569e28a7SMatthew G. Knepley PC_Jacobi *jac = (PC_Jacobi *)pc->data; 351569e28a7SMatthew G. Knepley PetscBool iascii; 352569e28a7SMatthew G. Knepley 353569e28a7SMatthew G. Knepley PetscFunctionBegin; 3549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 355569e28a7SMatthew G. Knepley if (iascii) { 356569e28a7SMatthew G. Knepley PCJacobiType type; 35767ed0f3bSStefano Zampini PetscBool useAbs, fixdiag; 358569e28a7SMatthew G. Knepley PetscViewerFormat format; 359569e28a7SMatthew G. Knepley 3609566063dSJacob Faibussowitsch PetscCall(PCJacobiGetType(pc, &type)); 3619566063dSJacob Faibussowitsch PetscCall(PCJacobiGetUseAbs(pc, &useAbs)); 3629566063dSJacob Faibussowitsch PetscCall(PCJacobiGetFixDiagonal(pc, &fixdiag)); 3639566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " type %s%s%s\n", PCJacobiTypes[type], useAbs ? ", using absolute value of entries" : "", !fixdiag ? ", not checking null diagonal entries" : "")); 3649566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 36548a46eb9SPierre Jolivet if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) PetscCall(VecView(jac->diag, viewer)); 366569e28a7SMatthew G. Knepley } 367569e28a7SMatthew G. Knepley PetscFunctionReturn(0); 368569e28a7SMatthew G. Knepley } 369569e28a7SMatthew G. Knepley 3704b9ad928SBarry Smith /* 3714b9ad928SBarry Smith PCCreate_Jacobi - Creates a Jacobi preconditioner context, PC_Jacobi, 3724b9ad928SBarry Smith and sets this as the private data within the generic preconditioning 3734b9ad928SBarry Smith context, PC, that was created within PCCreate(). 3744b9ad928SBarry Smith 3754b9ad928SBarry Smith Input Parameter: 3764b9ad928SBarry Smith . pc - the preconditioner context 3774b9ad928SBarry Smith 3784b9ad928SBarry Smith Application Interface Routine: PCCreate() 3794b9ad928SBarry Smith */ 3804b9ad928SBarry Smith 3814b9ad928SBarry Smith /*MC 3825a46d3faSBarry Smith PCJACOBI - Jacobi (i.e. diagonal scaling preconditioning) 3834b9ad928SBarry Smith 384f1580f4eSBarry Smith Options Database Keys: 385967c93d3SBarry Smith + -pc_jacobi_type <diagonal,rowmax,rowsum> - approach for forming the preconditioner 38667ed0f3bSStefano Zampini . -pc_jacobi_abs - use the absolute value of the diagonal entry 387147403d9SBarry Smith - -pc_jacobi_fixdiag - fix for zero diagonal terms by placing 1.0 in those locations 3884b9ad928SBarry Smith 3894b9ad928SBarry Smith Level: beginner 3904b9ad928SBarry Smith 39195452b02SPatrick Sanan Notes: 392f1580f4eSBarry Smith By using `KSPSetPCSide`(ksp,`PC_SYMMETRIC`) or -ksp_pc_side symmetric 3934b9ad928SBarry Smith can scale each side of the matrix by the square root of the diagonal entries. 3944b9ad928SBarry Smith 3954b9ad928SBarry Smith Zero entries along the diagonal are replaced with the value 1.0 3964b9ad928SBarry Smith 397f1580f4eSBarry Smith See `PCPBJACOBI` for fixed-size point block, `PCVPBJACOBI` for variable-sized point block, and `PCBJACOBI` for large size blocks 398422a814eSBarry Smith 399db781477SPatrick Sanan .seealso: `PCCreate()`, `PCSetType()`, `PCType`, `PC`, 400f1580f4eSBarry Smith `PCJacobiSetType()`, `PCJacobiSetUseAbs()`, `PCJacobiGetUseAbs()`, `PCASM`, 401db781477SPatrick Sanan `PCJacobiSetFixDiagonal()`, `PCJacobiGetFixDiagonal()` 402db781477SPatrick Sanan `PCJacobiSetType()`, `PCJacobiSetUseAbs()`, `PCJacobiGetUseAbs()`, `PCPBJACOBI`, `PCBJACOBI`, `PCVPBJACOBI` 4034b9ad928SBarry Smith M*/ 4044b9ad928SBarry Smith 4059371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode PCCreate_Jacobi(PC pc) { 4064b9ad928SBarry Smith PC_Jacobi *jac; 4074b9ad928SBarry Smith 4084b9ad928SBarry Smith PetscFunctionBegin; 4094b9ad928SBarry Smith /* 4104b9ad928SBarry Smith Creates the private data structure for this preconditioner and 4114b9ad928SBarry Smith attach it to the PC object. 4124b9ad928SBarry Smith */ 413*4dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&jac)); 4144b9ad928SBarry Smith pc->data = (void *)jac; 4154b9ad928SBarry Smith 4164b9ad928SBarry Smith /* 4174b9ad928SBarry Smith Initialize the pointers to vectors to ZERO; these will be used to store 4184b9ad928SBarry Smith diagonal entries of the matrix for fast preconditioner application. 4194b9ad928SBarry Smith */ 4200a545947SLisandro Dalcin jac->diag = NULL; 4210a545947SLisandro Dalcin jac->diagsqrt = NULL; 4224b9ad928SBarry Smith jac->userowmax = PETSC_FALSE; 42386697f06SMatthew Knepley jac->userowsum = PETSC_FALSE; 424cd47f5d9SBarry Smith jac->useabs = PETSC_FALSE; 42567ed0f3bSStefano Zampini jac->fixdiag = PETSC_TRUE; 4264b9ad928SBarry Smith 4274b9ad928SBarry Smith /* 4284b9ad928SBarry Smith Set the pointers for the functions that are provided above. 4294b9ad928SBarry Smith Now when the user-level routines (such as PCApply(), PCDestroy(), etc.) 4304b9ad928SBarry Smith are called, they will automatically call these functions. Note we 4314b9ad928SBarry Smith choose not to provide a couple of these functions since they are 4324b9ad928SBarry Smith not needed. 4334b9ad928SBarry Smith */ 4344b9ad928SBarry Smith pc->ops->apply = PCApply_Jacobi; 4354b9ad928SBarry Smith pc->ops->applytranspose = PCApply_Jacobi; 4364b9ad928SBarry Smith pc->ops->setup = PCSetUp_Jacobi; 437a06653b4SBarry Smith pc->ops->reset = PCReset_Jacobi; 4384b9ad928SBarry Smith pc->ops->destroy = PCDestroy_Jacobi; 4394b9ad928SBarry Smith pc->ops->setfromoptions = PCSetFromOptions_Jacobi; 440569e28a7SMatthew G. Knepley pc->ops->view = PCView_Jacobi; 4410a545947SLisandro Dalcin pc->ops->applyrichardson = NULL; 4424b9ad928SBarry Smith pc->ops->applysymmetricleft = PCApplySymmetricLeftOrRight_Jacobi; 4434b9ad928SBarry Smith pc->ops->applysymmetricright = PCApplySymmetricLeftOrRight_Jacobi; 4442fa5cd67SKarl Rupp 4459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCJacobiSetType_C", PCJacobiSetType_Jacobi)); 4469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCJacobiGetType_C", PCJacobiGetType_Jacobi)); 4479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCJacobiSetUseAbs_C", PCJacobiSetUseAbs_Jacobi)); 4489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCJacobiGetUseAbs_C", PCJacobiGetUseAbs_Jacobi)); 4499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCJacobiSetFixDiagonal_C", PCJacobiSetFixDiagonal_Jacobi)); 4509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)pc, "PCJacobiGetFixDiagonal_C", PCJacobiGetFixDiagonal_Jacobi)); 4514b9ad928SBarry Smith PetscFunctionReturn(0); 4524b9ad928SBarry Smith } 453cd47f5d9SBarry Smith 454cd47f5d9SBarry Smith /*@ 455f1580f4eSBarry Smith PCJacobiSetUseAbs - Causes the Jacobi preconditioner `PCJACOBI` to use the 45667ed0f3bSStefano Zampini absolute values of the diagonal divisors in the preconditioner 457cd47f5d9SBarry Smith 458f1580f4eSBarry Smith Logically Collective on pc 459cd47f5d9SBarry Smith 460cd47f5d9SBarry Smith Input Parameters: 461baa89ecbSBarry Smith + pc - the preconditioner context 462baa89ecbSBarry Smith - flg - whether to use absolute values or not 463baa89ecbSBarry Smith 464baa89ecbSBarry Smith Options Database Key: 465147403d9SBarry Smith . -pc_jacobi_abs <bool> - use absolute values 466baa89ecbSBarry Smith 467f1580f4eSBarry Smith Note: 46895452b02SPatrick Sanan This takes affect at the next construction of the preconditioner 469baa89ecbSBarry Smith 470baa89ecbSBarry Smith Level: intermediate 471baa89ecbSBarry Smith 472f1580f4eSBarry Smith .seealso: `PCJACOBI`, `PCJacobiaSetType()`, `PCJacobiGetUseAbs()` 473baa89ecbSBarry Smith @*/ 4749371c9d4SSatish Balay PetscErrorCode PCJacobiSetUseAbs(PC pc, PetscBool flg) { 475baa89ecbSBarry Smith PetscFunctionBegin; 476baa89ecbSBarry Smith PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 477cac4c232SBarry Smith PetscTryMethod(pc, "PCJacobiSetUseAbs_C", (PC, PetscBool), (pc, flg)); 478baa89ecbSBarry Smith PetscFunctionReturn(0); 479baa89ecbSBarry Smith } 480baa89ecbSBarry Smith 481baa89ecbSBarry Smith /*@ 482f1580f4eSBarry Smith PCJacobiGetUseAbs - Determines if the Jacobi preconditioner `PCJACOBI` uses the 48367ed0f3bSStefano Zampini absolute values of the diagonal divisors in the preconditioner 484baa89ecbSBarry Smith 485f1580f4eSBarry Smith Logically Collective on pc 486baa89ecbSBarry Smith 487baa89ecbSBarry Smith Input Parameter: 488cd47f5d9SBarry Smith . pc - the preconditioner context 489cd47f5d9SBarry Smith 490baa89ecbSBarry Smith Output Parameter: 491baa89ecbSBarry Smith . flg - whether to use absolute values or not 492cd47f5d9SBarry Smith 493cd47f5d9SBarry Smith Level: intermediate 494cd47f5d9SBarry Smith 495f1580f4eSBarry Smith .seealso: `PCJACOBI`, `PCJacobiaSetType()`, `PCJacobiSetUseAbs()`, `PCJacobiGetType()` 496cd47f5d9SBarry Smith @*/ 4979371c9d4SSatish Balay PetscErrorCode PCJacobiGetUseAbs(PC pc, PetscBool *flg) { 498cd47f5d9SBarry Smith PetscFunctionBegin; 4990700a824SBarry Smith PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 500cac4c232SBarry Smith PetscUseMethod(pc, "PCJacobiGetUseAbs_C", (PC, PetscBool *), (pc, flg)); 501cd47f5d9SBarry Smith PetscFunctionReturn(0); 502cd47f5d9SBarry Smith } 503cd47f5d9SBarry Smith 5044b9ad928SBarry Smith /*@ 505147403d9SBarry Smith PCJacobiSetFixDiagonal - Check for zero values on the diagonal and replace them with 1.0 50667ed0f3bSStefano Zampini 507f1580f4eSBarry Smith Logically Collective on pc 50867ed0f3bSStefano Zampini 50967ed0f3bSStefano Zampini Input Parameters: 51067ed0f3bSStefano Zampini + pc - the preconditioner context 51167ed0f3bSStefano Zampini - flg - the boolean flag 51267ed0f3bSStefano Zampini 51367ed0f3bSStefano Zampini Options Database Key: 514147403d9SBarry Smith . -pc_jacobi_fixdiagonal <bool> - check for zero values on the diagonal 51567ed0f3bSStefano Zampini 516f1580f4eSBarry Smith Note: 51767ed0f3bSStefano Zampini This takes affect at the next construction of the preconditioner 51867ed0f3bSStefano Zampini 51967ed0f3bSStefano Zampini Level: intermediate 52067ed0f3bSStefano Zampini 521f1580f4eSBarry Smith .seealso: `PCJACOBI`, `PCJacobiSetType()`, `PCJacobiGetFixDiagonal()`, `PCJacobiSetUseAbs()` 52267ed0f3bSStefano Zampini @*/ 5239371c9d4SSatish Balay PetscErrorCode PCJacobiSetFixDiagonal(PC pc, PetscBool flg) { 52467ed0f3bSStefano Zampini PetscFunctionBegin; 52567ed0f3bSStefano Zampini PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 526cac4c232SBarry Smith PetscTryMethod(pc, "PCJacobiSetFixDiagonal_C", (PC, PetscBool), (pc, flg)); 52767ed0f3bSStefano Zampini PetscFunctionReturn(0); 52867ed0f3bSStefano Zampini } 52967ed0f3bSStefano Zampini 53067ed0f3bSStefano Zampini /*@ 531f1580f4eSBarry Smith PCJacobiGetFixDiagonal - Determines if the Jacobi preconditioner `PCJACOBI` checks for zero diagonal terms 53267ed0f3bSStefano Zampini 533f1580f4eSBarry Smith Logically Collective on pc 53467ed0f3bSStefano Zampini 53567ed0f3bSStefano Zampini Input Parameter: 53667ed0f3bSStefano Zampini . pc - the preconditioner context 53767ed0f3bSStefano Zampini 53867ed0f3bSStefano Zampini Output Parameter: 53967ed0f3bSStefano Zampini . flg - the boolean flag 54067ed0f3bSStefano Zampini 54167ed0f3bSStefano Zampini Options Database Key: 54267b8a455SSatish Balay . -pc_jacobi_fixdiagonal <bool> - Fix 0 terms on diagonal by using 1 54367ed0f3bSStefano Zampini 54467ed0f3bSStefano Zampini Level: intermediate 54567ed0f3bSStefano Zampini 546f1580f4eSBarry Smith .seealso: `PCJACOBI`, `PCJacobiSetType()`, `PCJacobiSetFixDiagonal()` 54767ed0f3bSStefano Zampini @*/ 5489371c9d4SSatish Balay PetscErrorCode PCJacobiGetFixDiagonal(PC pc, PetscBool *flg) { 54967ed0f3bSStefano Zampini PetscFunctionBegin; 55067ed0f3bSStefano Zampini PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 551cac4c232SBarry Smith PetscUseMethod(pc, "PCJacobiGetFixDiagonal_C", (PC, PetscBool *), (pc, flg)); 55267ed0f3bSStefano Zampini PetscFunctionReturn(0); 55367ed0f3bSStefano Zampini } 55467ed0f3bSStefano Zampini 55567ed0f3bSStefano Zampini /*@ 556baa89ecbSBarry Smith PCJacobiSetType - Causes the Jacobi preconditioner to use either the diagonal, the maximum entry in each row, 557baa89ecbSBarry Smith of the sum of rows entries for the diagonal preconditioner 5584b9ad928SBarry Smith 559f1580f4eSBarry Smith Logically Collective on pc 5604b9ad928SBarry Smith 5614b9ad928SBarry Smith Input Parameters: 562baa89ecbSBarry Smith + pc - the preconditioner context 563f1580f4eSBarry Smith - type - `PC_JACOBI_DIAGONAL`, `PC_JACOBI_ROWMAX`, `PC_JACOBI_ROWSUM` 5644b9ad928SBarry Smith 5654b9ad928SBarry Smith Options Database Key: 566147403d9SBarry Smith . -pc_jacobi_type <diagonal,rowmax,rowsum> - the type of diagonal matrix to use for Jacobi 5674b9ad928SBarry Smith 5684b9ad928SBarry Smith Level: intermediate 5694b9ad928SBarry Smith 570f1580f4eSBarry Smith Developer Note: 571f1580f4eSBarry Smith Why is there a separate function for using the absolute value? 572f1580f4eSBarry Smith 573f1580f4eSBarry Smith .seealso: `PCJACOBI`, `PCJacobiSetUseAbs()`, `PCJacobiGetType()` 5744b9ad928SBarry Smith @*/ 5759371c9d4SSatish Balay PetscErrorCode PCJacobiSetType(PC pc, PCJacobiType type) { 5764b9ad928SBarry Smith PetscFunctionBegin; 5770700a824SBarry Smith PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 578cac4c232SBarry Smith PetscTryMethod(pc, "PCJacobiSetType_C", (PC, PCJacobiType), (pc, type)); 5794b9ad928SBarry Smith PetscFunctionReturn(0); 5804b9ad928SBarry Smith } 5814b9ad928SBarry Smith 58286697f06SMatthew Knepley /*@ 583baa89ecbSBarry Smith PCJacobiGetType - Gets how the diagonal matrix is produced for the preconditioner 58486697f06SMatthew Knepley 585f1580f4eSBarry Smith Not Collective on pc 58686697f06SMatthew Knepley 587baa89ecbSBarry Smith Input Parameter: 58886697f06SMatthew Knepley . pc - the preconditioner context 58986697f06SMatthew Knepley 590baa89ecbSBarry Smith Output Parameter: 591f1580f4eSBarry Smith . type - `PC_JACOBI_DIAGONAL`, `PC_JACOBI_ROWMAX`, `PC_JACOBI_ROWSUM` 59286697f06SMatthew Knepley 59386697f06SMatthew Knepley Level: intermediate 59486697f06SMatthew Knepley 595f1580f4eSBarry Smith .seealso: `PCJACOBI`, `PCJacobiaUseAbs()`, `PCJacobiSetType()` 59686697f06SMatthew Knepley @*/ 5979371c9d4SSatish Balay PetscErrorCode PCJacobiGetType(PC pc, PCJacobiType *type) { 59886697f06SMatthew Knepley PetscFunctionBegin; 5990700a824SBarry Smith PetscValidHeaderSpecific(pc, PC_CLASSID, 1); 600cac4c232SBarry Smith PetscUseMethod(pc, "PCJacobiGetType_C", (PC, PCJacobiType *), (pc, type)); 60186697f06SMatthew Knepley PetscFunctionReturn(0); 60286697f06SMatthew Knepley } 603