xref: /petsc/src/ksp/pc/impls/patch/pcpatch.c (revision 1690c2ae071c7584458d4e437df7b47bc4686b3c)
14bbf5ea8SMatthew G. Knepley #include <petsc/private/pcpatchimpl.h> /*I "petscpc.h" I*/
254ab768cSLawrence Mitchell #include <petsc/private/kspimpl.h>     /* For ksp->setfromoptionscalled */
39d4fc724SLawrence Mitchell #include <petsc/private/vecimpl.h>     /* For vec->map */
45f824522SMatthew G. Knepley #include <petsc/private/dmpleximpl.h>  /* For DMPlexComputeJacobian_Patch_Internal() */
54bbf5ea8SMatthew G. Knepley #include <petscsf.h>
64bbf5ea8SMatthew G. Knepley #include <petscbt.h>
75f824522SMatthew G. Knepley #include <petscds.h>
8c73d2cf6SLawrence Mitchell #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/
94bbf5ea8SMatthew G. Knepley 
10f39ec787SMatthew G. Knepley PetscBool  PCPatchcite       = PETSC_FALSE;
11f39ec787SMatthew G. Knepley const char PCPatchCitation[] = "@article{FarrellKnepleyWechsungMitchell2020,\n"
12f39ec787SMatthew G. Knepley                                "title   = {{PCPATCH}: software for the topological construction of multigrid relaxation methods},\n"
13f39ec787SMatthew G. Knepley                                "author  = {Patrick E Farrell and Matthew G Knepley and Lawrence Mitchell and Florian Wechsung},\n"
14f39ec787SMatthew G. Knepley                                "journal = {ACM Transaction on Mathematical Software},\n"
15f39ec787SMatthew G. Knepley                                "eprint  = {http://arxiv.org/abs/1912.08516},\n"
16f39ec787SMatthew G. Knepley                                "volume  = {47},\n"
17f39ec787SMatthew G. Knepley                                "number  = {3},\n"
18f39ec787SMatthew G. Knepley                                "pages   = {1--22},\n"
19f39ec787SMatthew G. Knepley                                "year    = {2021},\n"
20f39ec787SMatthew G. Knepley                                "petsc_uses={KSP,DMPlex}\n}\n";
21f39ec787SMatthew G. Knepley 
229d4fc724SLawrence Mitchell PetscLogEvent PC_Patch_CreatePatches, PC_Patch_ComputeOp, PC_Patch_Solve, PC_Patch_Apply, PC_Patch_Prealloc;
234bbf5ea8SMatthew G. Knepley 
24d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode ObjectView(PetscObject obj, PetscViewer viewer, PetscViewerFormat format)
25d71ae5a4SJacob Faibussowitsch {
269566063dSJacob Faibussowitsch   PetscCall(PetscViewerPushFormat(viewer, format));
279566063dSJacob Faibussowitsch   PetscCall(PetscObjectView(obj, viewer));
289566063dSJacob Faibussowitsch   PetscCall(PetscViewerPopFormat(viewer));
293ba16761SJacob Faibussowitsch   return PETSC_SUCCESS;
305f824522SMatthew G. Knepley }
315f824522SMatthew G. Knepley 
32d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchConstruct_Star(void *vpatch, DM dm, PetscInt point, PetscHSetI ht)
33d71ae5a4SJacob Faibussowitsch {
344bbf5ea8SMatthew G. Knepley   PetscInt  starSize;
354bbf5ea8SMatthew G. Knepley   PetscInt *star = NULL, si;
364bbf5ea8SMatthew G. Knepley 
374bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
389566063dSJacob Faibussowitsch   PetscCall(PetscHSetIClear(ht));
394bbf5ea8SMatthew G. Knepley   /* To start with, add the point we care about */
409566063dSJacob Faibussowitsch   PetscCall(PetscHSetIAdd(ht, point));
414bbf5ea8SMatthew G. Knepley   /* Loop over all the points that this point connects to */
429566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_FALSE, &starSize, &star));
439566063dSJacob Faibussowitsch   for (si = 0; si < starSize * 2; si += 2) PetscCall(PetscHSetIAdd(ht, star[si]));
449566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_FALSE, &starSize, &star));
453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
464bbf5ea8SMatthew G. Knepley }
474bbf5ea8SMatthew G. Knepley 
48d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchConstruct_Vanka(void *vpatch, DM dm, PetscInt point, PetscHSetI ht)
49d71ae5a4SJacob Faibussowitsch {
504bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)vpatch;
514bbf5ea8SMatthew G. Knepley   PetscInt  starSize;
524bbf5ea8SMatthew G. Knepley   PetscInt *star         = NULL;
534bbf5ea8SMatthew G. Knepley   PetscBool shouldIgnore = PETSC_FALSE;
544bbf5ea8SMatthew G. Knepley   PetscInt  cStart, cEnd, iStart, iEnd, si;
554bbf5ea8SMatthew G. Knepley 
564bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
579566063dSJacob Faibussowitsch   PetscCall(PetscHSetIClear(ht));
584bbf5ea8SMatthew G. Knepley   /* To start with, add the point we care about */
599566063dSJacob Faibussowitsch   PetscCall(PetscHSetIAdd(ht, point));
604bbf5ea8SMatthew G. Knepley   /* Should we ignore any points of a certain dimension? */
614bbf5ea8SMatthew G. Knepley   if (patch->vankadim >= 0) {
624bbf5ea8SMatthew G. Knepley     shouldIgnore = PETSC_TRUE;
639566063dSJacob Faibussowitsch     PetscCall(DMPlexGetDepthStratum(dm, patch->vankadim, &iStart, &iEnd));
644bbf5ea8SMatthew G. Knepley   }
659566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
664bbf5ea8SMatthew G. Knepley   /* Loop over all the cells that this point connects to */
679566063dSJacob Faibussowitsch   PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_FALSE, &starSize, &star));
685f824522SMatthew G. Knepley   for (si = 0; si < starSize * 2; si += 2) {
694bbf5ea8SMatthew G. Knepley     const PetscInt cell = star[si];
704bbf5ea8SMatthew G. Knepley     PetscInt       closureSize;
714bbf5ea8SMatthew G. Knepley     PetscInt      *closure = NULL, ci;
724bbf5ea8SMatthew G. Knepley 
734bbf5ea8SMatthew G. Knepley     if (cell < cStart || cell >= cEnd) continue;
744bbf5ea8SMatthew G. Knepley     /* now loop over all entities in the closure of that cell */
759566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
765f824522SMatthew G. Knepley     for (ci = 0; ci < closureSize * 2; ci += 2) {
774bbf5ea8SMatthew G. Knepley       const PetscInt newpoint = closure[ci];
784bbf5ea8SMatthew G. Knepley 
794bbf5ea8SMatthew G. Knepley       /* We've been told to ignore entities of this type.*/
804bbf5ea8SMatthew G. Knepley       if (shouldIgnore && newpoint >= iStart && newpoint < iEnd) continue;
819566063dSJacob Faibussowitsch       PetscCall(PetscHSetIAdd(ht, newpoint));
824bbf5ea8SMatthew G. Knepley     }
839566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure));
844bbf5ea8SMatthew G. Knepley   }
859566063dSJacob Faibussowitsch   PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_FALSE, &starSize, &star));
863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
874bbf5ea8SMatthew G. Knepley }
884bbf5ea8SMatthew G. Knepley 
89d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchConstruct_Pardecomp(void *vpatch, DM dm, PetscInt point, PetscHSetI ht)
90d71ae5a4SJacob Faibussowitsch {
91b525f888SPatrick Farrell   PC_PATCH       *patch   = (PC_PATCH *)vpatch;
920a390943SPatrick Farrell   DMLabel         ghost   = NULL;
93eae3dc7dSJacob Faibussowitsch   const PetscInt *leaves  = NULL;
94eae3dc7dSJacob Faibussowitsch   PetscInt        nleaves = 0, pStart, pEnd, loc;
950a390943SPatrick Farrell   PetscBool       isFiredrake;
960a390943SPatrick Farrell   PetscBool       flg;
97b525f888SPatrick Farrell   PetscInt        starSize;
98b525f888SPatrick Farrell   PetscInt       *star = NULL;
9925fd193aSPatrick Farrell   PetscInt        opoint, overlapi;
1000a390943SPatrick Farrell 
1010a390943SPatrick Farrell   PetscFunctionBegin;
1029566063dSJacob Faibussowitsch   PetscCall(PetscHSetIClear(ht));
1030a390943SPatrick Farrell 
1049566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
1050a390943SPatrick Farrell 
1069566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, "pyop2_ghost", &isFiredrake));
1070a390943SPatrick Farrell   if (isFiredrake) {
1089566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, "pyop2_ghost", &ghost));
1099566063dSJacob Faibussowitsch     PetscCall(DMLabelCreateIndex(ghost, pStart, pEnd));
1100a390943SPatrick Farrell   } else {
1110a390943SPatrick Farrell     PetscSF sf;
1129566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm, &sf));
1139566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL));
1140a390943SPatrick Farrell     nleaves = PetscMax(nleaves, 0);
1150a390943SPatrick Farrell   }
1160a390943SPatrick Farrell 
11725fd193aSPatrick Farrell   for (opoint = pStart; opoint < pEnd; ++opoint) {
1189566063dSJacob Faibussowitsch     if (ghost) PetscCall(DMLabelHasPoint(ghost, opoint, &flg));
1199371c9d4SSatish Balay     else {
1209371c9d4SSatish Balay       PetscCall(PetscFindInt(opoint, nleaves, leaves, &loc));
1219371c9d4SSatish Balay       flg = loc >= 0 ? PETSC_TRUE : PETSC_FALSE;
1229371c9d4SSatish Balay     }
1230a390943SPatrick Farrell     /* Not an owned entity, don't make a cell patch. */
1240a390943SPatrick Farrell     if (flg) continue;
1259566063dSJacob Faibussowitsch     PetscCall(PetscHSetIAdd(ht, opoint));
1260a390943SPatrick Farrell   }
1270a390943SPatrick Farrell 
128b525f888SPatrick Farrell   /* Now build the overlap for the patch */
12925fd193aSPatrick Farrell   for (overlapi = 0; overlapi < patch->pardecomp_overlap; ++overlapi) {
130b525f888SPatrick Farrell     PetscInt  index    = 0;
131b525f888SPatrick Farrell     PetscInt *htpoints = NULL;
132b525f888SPatrick Farrell     PetscInt  htsize;
13325fd193aSPatrick Farrell     PetscInt  i;
134b525f888SPatrick Farrell 
1359566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetSize(ht, &htsize));
1369566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(htsize, &htpoints));
1379566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetElems(ht, &index, htpoints));
138b525f888SPatrick Farrell 
13925fd193aSPatrick Farrell     for (i = 0; i < htsize; ++i) {
14025fd193aSPatrick Farrell       PetscInt hpoint = htpoints[i];
14125fd193aSPatrick Farrell       PetscInt si;
142b525f888SPatrick Farrell 
1439566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, hpoint, PETSC_FALSE, &starSize, &star));
14425fd193aSPatrick Farrell       for (si = 0; si < starSize * 2; si += 2) {
145b525f888SPatrick Farrell         const PetscInt starp = star[si];
146b525f888SPatrick Farrell         PetscInt       closureSize;
147b525f888SPatrick Farrell         PetscInt      *closure = NULL, ci;
148b525f888SPatrick Farrell 
149b525f888SPatrick Farrell         /* now loop over all entities in the closure of starp */
1509566063dSJacob Faibussowitsch         PetscCall(DMPlexGetTransitiveClosure(dm, starp, PETSC_TRUE, &closureSize, &closure));
15125fd193aSPatrick Farrell         for (ci = 0; ci < closureSize * 2; ci += 2) {
152b525f888SPatrick Farrell           const PetscInt closstarp = closure[ci];
1539566063dSJacob Faibussowitsch           PetscCall(PetscHSetIAdd(ht, closstarp));
154b525f888SPatrick Farrell         }
1559566063dSJacob Faibussowitsch         PetscCall(DMPlexRestoreTransitiveClosure(dm, starp, PETSC_TRUE, &closureSize, &closure));
156b525f888SPatrick Farrell       }
1579566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, hpoint, PETSC_FALSE, &starSize, &star));
158b525f888SPatrick Farrell     }
1599566063dSJacob Faibussowitsch     PetscCall(PetscFree(htpoints));
160b525f888SPatrick Farrell   }
1613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1620a390943SPatrick Farrell }
1630a390943SPatrick Farrell 
1644bbf5ea8SMatthew G. Knepley /* The user's already set the patches in patch->userIS. Build the hash tables */
165d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchConstruct_User(void *vpatch, DM dm, PetscInt point, PetscHSetI ht)
166d71ae5a4SJacob Faibussowitsch {
1674bbf5ea8SMatthew G. Knepley   PC_PATCH       *patch   = (PC_PATCH *)vpatch;
1684bbf5ea8SMatthew G. Knepley   IS              patchis = patch->userIS[point];
1694bbf5ea8SMatthew G. Knepley   PetscInt        n;
1704bbf5ea8SMatthew G. Knepley   const PetscInt *patchdata;
1714bbf5ea8SMatthew G. Knepley   PetscInt        pStart, pEnd, i;
1724bbf5ea8SMatthew G. Knepley 
1734bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
1749566063dSJacob Faibussowitsch   PetscCall(PetscHSetIClear(ht));
1759566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
1769566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(patchis, &n));
1779566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(patchis, &patchdata));
1784bbf5ea8SMatthew G. Knepley   for (i = 0; i < n; ++i) {
1794bbf5ea8SMatthew G. Knepley     const PetscInt ownedpoint = patchdata[i];
1804bbf5ea8SMatthew G. Knepley 
1817a46b595SBarry Smith     PetscCheck(ownedpoint >= pStart && ownedpoint < pEnd, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " was not in [%" PetscInt_FMT ", %" PetscInt_FMT ")", ownedpoint, pStart, pEnd);
1829566063dSJacob Faibussowitsch     PetscCall(PetscHSetIAdd(ht, ownedpoint));
1834bbf5ea8SMatthew G. Knepley   }
1849566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(patchis, &patchdata));
1853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1864bbf5ea8SMatthew G. Knepley }
1874bbf5ea8SMatthew G. Knepley 
188d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchCreateDefaultSF_Private(PC pc, PetscInt n, const PetscSF *sf, const PetscInt *bs)
189d71ae5a4SJacob Faibussowitsch {
1904bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
1914bbf5ea8SMatthew G. Knepley   PetscInt  i;
1924bbf5ea8SMatthew G. Knepley 
1934bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
1944bbf5ea8SMatthew G. Knepley   if (n == 1 && bs[0] == 1) {
1951bb6d2a8SBarry Smith     patch->sectionSF = sf[0];
1969566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)patch->sectionSF));
1974bbf5ea8SMatthew G. Knepley   } else {
1984bbf5ea8SMatthew G. Knepley     PetscInt     allRoots = 0, allLeaves = 0;
1994bbf5ea8SMatthew G. Knepley     PetscInt     leafOffset    = 0;
2004bbf5ea8SMatthew G. Knepley     PetscInt    *ilocal        = NULL;
2014bbf5ea8SMatthew G. Knepley     PetscSFNode *iremote       = NULL;
2024bbf5ea8SMatthew G. Knepley     PetscInt    *remoteOffsets = NULL;
2034bbf5ea8SMatthew G. Knepley     PetscInt     index         = 0;
2041b68eb51SMatthew G. Knepley     PetscHMapI   rankToIndex;
2054bbf5ea8SMatthew G. Knepley     PetscInt     numRanks = 0;
2064bbf5ea8SMatthew G. Knepley     PetscSFNode *remote   = NULL;
2074bbf5ea8SMatthew G. Knepley     PetscSF      rankSF;
2084bbf5ea8SMatthew G. Knepley     PetscInt    *ranks   = NULL;
2094bbf5ea8SMatthew G. Knepley     PetscInt    *offsets = NULL;
2104bbf5ea8SMatthew G. Knepley     MPI_Datatype contig;
2111b68eb51SMatthew G. Knepley     PetscHSetI   ranksUniq;
2126497c311SBarry Smith     PetscMPIInt  in;
2134bbf5ea8SMatthew G. Knepley 
2144bbf5ea8SMatthew G. Knepley     /* First figure out how many dofs there are in the concatenated numbering.
215f1580f4eSBarry Smith        allRoots: number of owned global dofs;
216f1580f4eSBarry Smith        allLeaves: number of visible dofs (global + ghosted).
2174bbf5ea8SMatthew G. Knepley     */
2184bbf5ea8SMatthew G. Knepley     for (i = 0; i < n; ++i) {
2194bbf5ea8SMatthew G. Knepley       PetscInt nroots, nleaves;
2204bbf5ea8SMatthew G. Knepley 
2219566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(sf[i], &nroots, &nleaves, NULL, NULL));
2224bbf5ea8SMatthew G. Knepley       allRoots += nroots * bs[i];
2234bbf5ea8SMatthew G. Knepley       allLeaves += nleaves * bs[i];
2244bbf5ea8SMatthew G. Knepley     }
2259566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(allLeaves, &ilocal));
2269566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(allLeaves, &iremote));
2274bbf5ea8SMatthew G. Knepley     /* Now build an SF that just contains process connectivity. */
2289566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ranksUniq));
2294bbf5ea8SMatthew G. Knepley     for (i = 0; i < n; ++i) {
2304bbf5ea8SMatthew G. Knepley       const PetscMPIInt *ranks = NULL;
2316497c311SBarry Smith       PetscMPIInt        nranks;
2324bbf5ea8SMatthew G. Knepley 
2339566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(sf[i]));
2349566063dSJacob Faibussowitsch       PetscCall(PetscSFGetRootRanks(sf[i], &nranks, &ranks, NULL, NULL, NULL));
2354bbf5ea8SMatthew G. Knepley       /* These are all the ranks who communicate with me. */
2366497c311SBarry Smith       for (PetscMPIInt j = 0; j < nranks; ++j) PetscCall(PetscHSetIAdd(ranksUniq, (PetscInt)ranks[j]));
2374bbf5ea8SMatthew G. Knepley     }
2389566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetSize(ranksUniq, &numRanks));
2399566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numRanks, &remote));
2409566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numRanks, &ranks));
2419566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetElems(ranksUniq, &index, ranks));
2424bbf5ea8SMatthew G. Knepley 
2439566063dSJacob Faibussowitsch     PetscCall(PetscHMapICreate(&rankToIndex));
2446497c311SBarry Smith     for (PetscInt i = 0; i < numRanks; ++i) {
2456497c311SBarry Smith       remote[i].rank  = (PetscMPIInt)ranks[i];
2464bbf5ea8SMatthew G. Knepley       remote[i].index = 0;
2479566063dSJacob Faibussowitsch       PetscCall(PetscHMapISet(rankToIndex, ranks[i], i));
2484bbf5ea8SMatthew G. Knepley     }
2499566063dSJacob Faibussowitsch     PetscCall(PetscFree(ranks));
2509566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ranksUniq));
2519566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)pc), &rankSF));
2529566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(rankSF, 1, numRanks, NULL, PETSC_OWN_POINTER, remote, PETSC_OWN_POINTER));
2539566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(rankSF));
254f1580f4eSBarry Smith     /* OK, use it to communicate the root offset on the remote processes for each subspace. */
2559566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(n, &offsets));
2569566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(n * numRanks, &remoteOffsets));
2574bbf5ea8SMatthew G. Knepley 
2584bbf5ea8SMatthew G. Knepley     offsets[0] = 0;
2594bbf5ea8SMatthew G. Knepley     for (i = 1; i < n; ++i) {
2604bbf5ea8SMatthew G. Knepley       PetscInt nroots;
2614bbf5ea8SMatthew G. Knepley 
2629566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(sf[i - 1], &nroots, NULL, NULL, NULL));
2634bbf5ea8SMatthew G. Knepley       offsets[i] = offsets[i - 1] + nroots * bs[i - 1];
2644bbf5ea8SMatthew G. Knepley     }
265f1580f4eSBarry Smith     /* Offsets are the offsets on the current process of the global dof numbering for the subspaces. */
2666497c311SBarry Smith     PetscCall(PetscMPIIntCast(n, &in));
2676497c311SBarry Smith     PetscCallMPI(MPI_Type_contiguous(in, MPIU_INT, &contig));
2689566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&contig));
2694bbf5ea8SMatthew G. Knepley 
2709566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(rankSF, contig, offsets, remoteOffsets, MPI_REPLACE));
2719566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(rankSF, contig, offsets, remoteOffsets, MPI_REPLACE));
2729566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&contig));
2739566063dSJacob Faibussowitsch     PetscCall(PetscFree(offsets));
2749566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&rankSF));
2754bbf5ea8SMatthew G. Knepley     /* Now remoteOffsets contains the offsets on the remote
276f1580f4eSBarry Smith       processes who communicate with me.  So now we can
277f1580f4eSBarry Smith       concatenate the list of SFs into a single one. */
2784bbf5ea8SMatthew G. Knepley     index = 0;
2794bbf5ea8SMatthew G. Knepley     for (i = 0; i < n; ++i) {
2804bbf5ea8SMatthew G. Knepley       const PetscSFNode *remote = NULL;
2814bbf5ea8SMatthew G. Knepley       const PetscInt    *local  = NULL;
2824bbf5ea8SMatthew G. Knepley       PetscInt           nroots, nleaves, j;
2834bbf5ea8SMatthew G. Knepley 
2849566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(sf[i], &nroots, &nleaves, &local, &remote));
2854bbf5ea8SMatthew G. Knepley       for (j = 0; j < nleaves; ++j) {
2864bbf5ea8SMatthew G. Knepley         PetscInt rank = remote[j].rank;
2874bbf5ea8SMatthew G. Knepley         PetscInt idx, rootOffset, k;
2884bbf5ea8SMatthew G. Knepley 
2899566063dSJacob Faibussowitsch         PetscCall(PetscHMapIGet(rankToIndex, rank, &idx));
29008401ef6SPierre Jolivet         PetscCheck(idx != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Didn't find rank, huh?");
2914bbf5ea8SMatthew G. Knepley         /* Offset on given rank for ith subspace */
2924bbf5ea8SMatthew G. Knepley         rootOffset = remoteOffsets[n * idx + i];
2934bbf5ea8SMatthew G. Knepley         for (k = 0; k < bs[i]; ++k) {
29473ec7555SLawrence Mitchell           ilocal[index]        = (local ? local[j] : j) * bs[i] + k + leafOffset;
2954bbf5ea8SMatthew G. Knepley           iremote[index].rank  = remote[j].rank;
2964bbf5ea8SMatthew G. Knepley           iremote[index].index = remote[j].index * bs[i] + k + rootOffset;
2974bbf5ea8SMatthew G. Knepley           ++index;
2984bbf5ea8SMatthew G. Knepley         }
2994bbf5ea8SMatthew G. Knepley       }
3004bbf5ea8SMatthew G. Knepley       leafOffset += nleaves * bs[i];
3014bbf5ea8SMatthew G. Knepley     }
3029566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&rankToIndex));
3039566063dSJacob Faibussowitsch     PetscCall(PetscFree(remoteOffsets));
3049566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)pc), &patch->sectionSF));
3059566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(patch->sectionSF, allRoots, allLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
3064bbf5ea8SMatthew G. Knepley   }
3073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3084bbf5ea8SMatthew G. Knepley }
3094bbf5ea8SMatthew G. Knepley 
3104bbf5ea8SMatthew G. Knepley /* TODO: Docs */
311ba38deedSJacob Faibussowitsch static PetscErrorCode PCPatchGetIgnoreDim(PC pc, PetscInt *dim)
312d71ae5a4SJacob Faibussowitsch {
3135f824522SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
3144d86920dSPierre Jolivet 
3155f824522SMatthew G. Knepley   PetscFunctionBegin;
3165f824522SMatthew G. Knepley   *dim = patch->ignoredim;
3173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3185f824522SMatthew G. Knepley }
3195f824522SMatthew G. Knepley 
3205f824522SMatthew G. Knepley /* TODO: Docs */
321d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetSaveOperators(PC pc, PetscBool flg)
322d71ae5a4SJacob Faibussowitsch {
3234bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
3244d86920dSPierre Jolivet 
3254bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
3264bbf5ea8SMatthew G. Knepley   patch->save_operators = flg;
3273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3284bbf5ea8SMatthew G. Knepley }
3294bbf5ea8SMatthew G. Knepley 
3304bbf5ea8SMatthew G. Knepley /* TODO: Docs */
331d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchGetSaveOperators(PC pc, PetscBool *flg)
332d71ae5a4SJacob Faibussowitsch {
3334bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
3344d86920dSPierre Jolivet 
3354bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
3364bbf5ea8SMatthew G. Knepley   *flg = patch->save_operators;
3373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3384bbf5ea8SMatthew G. Knepley }
3394bbf5ea8SMatthew G. Knepley 
3404bbf5ea8SMatthew G. Knepley /* TODO: Docs */
341d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetPrecomputeElementTensors(PC pc, PetscBool flg)
342d71ae5a4SJacob Faibussowitsch {
343fa84ea4cSLawrence Mitchell   PC_PATCH *patch = (PC_PATCH *)pc->data;
3444d86920dSPierre Jolivet 
345fa84ea4cSLawrence Mitchell   PetscFunctionBegin;
346fa84ea4cSLawrence Mitchell   patch->precomputeElementTensors = flg;
3473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
348fa84ea4cSLawrence Mitchell }
349fa84ea4cSLawrence Mitchell 
350fa84ea4cSLawrence Mitchell /* TODO: Docs */
351d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchGetPrecomputeElementTensors(PC pc, PetscBool *flg)
352d71ae5a4SJacob Faibussowitsch {
353fa84ea4cSLawrence Mitchell   PC_PATCH *patch = (PC_PATCH *)pc->data;
3544d86920dSPierre Jolivet 
355fa84ea4cSLawrence Mitchell   PetscFunctionBegin;
356fa84ea4cSLawrence Mitchell   *flg = patch->precomputeElementTensors;
3573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
358fa84ea4cSLawrence Mitchell }
359fa84ea4cSLawrence Mitchell 
360fa84ea4cSLawrence Mitchell /* TODO: Docs */
361d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetPartitionOfUnity(PC pc, PetscBool flg)
362d71ae5a4SJacob Faibussowitsch {
3634bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
3644d86920dSPierre Jolivet 
3654bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
3664bbf5ea8SMatthew G. Knepley   patch->partition_of_unity = flg;
3673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3684bbf5ea8SMatthew G. Knepley }
3694bbf5ea8SMatthew G. Knepley 
3704bbf5ea8SMatthew G. Knepley /* TODO: Docs */
371d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchGetPartitionOfUnity(PC pc, PetscBool *flg)
372d71ae5a4SJacob Faibussowitsch {
3734bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
3744d86920dSPierre Jolivet 
3754bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
3764bbf5ea8SMatthew G. Knepley   *flg = patch->partition_of_unity;
3773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3784bbf5ea8SMatthew G. Knepley }
3794bbf5ea8SMatthew G. Knepley 
3804bbf5ea8SMatthew G. Knepley /* TODO: Docs */
381ba38deedSJacob Faibussowitsch static PetscErrorCode PCPatchSetLocalComposition(PC pc, PCCompositeType type)
382d71ae5a4SJacob Faibussowitsch {
383c2e6f3c0SFlorian Wechsung   PC_PATCH *patch = (PC_PATCH *)pc->data;
3844d86920dSPierre Jolivet 
385c2e6f3c0SFlorian Wechsung   PetscFunctionBegin;
3862472a847SBarry Smith   PetscCheck(type == PC_COMPOSITE_ADDITIVE || type == PC_COMPOSITE_MULTIPLICATIVE, PetscObjectComm((PetscObject)pc), PETSC_ERR_SUP, "Only supports additive or multiplicative as the local type");
38761c4b389SFlorian Wechsung   patch->local_composition_type = type;
3883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
389c2e6f3c0SFlorian Wechsung }
390c2e6f3c0SFlorian Wechsung 
391c2e6f3c0SFlorian Wechsung /* TODO: Docs */
392fb80e629SPablo Brubeck PetscErrorCode PCPatchGetSubKSP(PC pc, PetscInt *npatch, KSP **ksp)
393fb80e629SPablo Brubeck {
394fb80e629SPablo Brubeck   PC_PATCH *patch = (PC_PATCH *)pc->data;
395fb80e629SPablo Brubeck   PetscInt  i;
396fb80e629SPablo Brubeck 
397fb80e629SPablo Brubeck   PetscFunctionBegin;
398fb80e629SPablo Brubeck   PetscCheck(pc->setupcalled, PetscObjectComm((PetscObject)pc), PETSC_ERR_ORDER, "Need to call PCSetUp() on PC (or KSPSetUp() on the outer KSP object) before calling here");
399fb80e629SPablo Brubeck 
400fb80e629SPablo Brubeck   PetscCall(PetscMalloc1(patch->npatch, ksp));
401fb80e629SPablo Brubeck   for (i = 0; i < patch->npatch; ++i) (*ksp)[i] = (KSP)patch->solver[i];
402fb80e629SPablo Brubeck   if (npatch) *npatch = patch->npatch;
403fb80e629SPablo Brubeck   PetscFunctionReturn(PETSC_SUCCESS);
404fb80e629SPablo Brubeck }
405fb80e629SPablo Brubeck 
406fb80e629SPablo Brubeck /* TODO: Docs */
407d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetSubMatType(PC pc, MatType sub_mat_type)
408d71ae5a4SJacob Faibussowitsch {
4094bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
4104bbf5ea8SMatthew G. Knepley 
4114bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
4129566063dSJacob Faibussowitsch   if (patch->sub_mat_type) PetscCall(PetscFree(patch->sub_mat_type));
4139566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(sub_mat_type, (char **)&patch->sub_mat_type));
4143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4154bbf5ea8SMatthew G. Knepley }
4164bbf5ea8SMatthew G. Knepley 
4174bbf5ea8SMatthew G. Knepley /* TODO: Docs */
418d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchGetSubMatType(PC pc, MatType *sub_mat_type)
419d71ae5a4SJacob Faibussowitsch {
4204bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
4214d86920dSPierre Jolivet 
4224bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
4234bbf5ea8SMatthew G. Knepley   *sub_mat_type = patch->sub_mat_type;
4243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4254bbf5ea8SMatthew G. Knepley }
4264bbf5ea8SMatthew G. Knepley 
4274bbf5ea8SMatthew G. Knepley /* TODO: Docs */
428d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetCellNumbering(PC pc, PetscSection cellNumbering)
429d71ae5a4SJacob Faibussowitsch {
4304bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
4314bbf5ea8SMatthew G. Knepley 
4324bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
4334bbf5ea8SMatthew G. Knepley   patch->cellNumbering = cellNumbering;
4349566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)cellNumbering));
4353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4364bbf5ea8SMatthew G. Knepley }
4374bbf5ea8SMatthew G. Knepley 
4384bbf5ea8SMatthew G. Knepley /* TODO: Docs */
439d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchGetCellNumbering(PC pc, PetscSection *cellNumbering)
440d71ae5a4SJacob Faibussowitsch {
4414bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
4424d86920dSPierre Jolivet 
4434bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
4444bbf5ea8SMatthew G. Knepley   *cellNumbering = patch->cellNumbering;
4453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4464bbf5ea8SMatthew G. Knepley }
4474bbf5ea8SMatthew G. Knepley 
4484bbf5ea8SMatthew G. Knepley /* TODO: Docs */
449d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetConstructType(PC pc, PCPatchConstructType ctype, PetscErrorCode (*func)(PC, PetscInt *, IS **, IS *, void *), void *ctx)
450d71ae5a4SJacob Faibussowitsch {
4514bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
4524bbf5ea8SMatthew G. Knepley 
4534bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
4544bbf5ea8SMatthew G. Knepley   patch->ctype = ctype;
4554bbf5ea8SMatthew G. Knepley   switch (ctype) {
4564bbf5ea8SMatthew G. Knepley   case PC_PATCH_STAR:
45740c17a03SPatrick Farrell     patch->user_patches     = PETSC_FALSE;
4584bbf5ea8SMatthew G. Knepley     patch->patchconstructop = PCPatchConstruct_Star;
4594bbf5ea8SMatthew G. Knepley     break;
4604bbf5ea8SMatthew G. Knepley   case PC_PATCH_VANKA:
46140c17a03SPatrick Farrell     patch->user_patches     = PETSC_FALSE;
4624bbf5ea8SMatthew G. Knepley     patch->patchconstructop = PCPatchConstruct_Vanka;
4634bbf5ea8SMatthew G. Knepley     break;
464e5b9877fSPatrick Farrell   case PC_PATCH_PARDECOMP:
4650a390943SPatrick Farrell     patch->user_patches     = PETSC_FALSE;
466e5b9877fSPatrick Farrell     patch->patchconstructop = PCPatchConstruct_Pardecomp;
4670a390943SPatrick Farrell     break;
4684bbf5ea8SMatthew G. Knepley   case PC_PATCH_USER:
4694bbf5ea8SMatthew G. Knepley   case PC_PATCH_PYTHON:
4704bbf5ea8SMatthew G. Knepley     patch->user_patches     = PETSC_TRUE;
4714bbf5ea8SMatthew G. Knepley     patch->patchconstructop = PCPatchConstruct_User;
472bdd9e0cdSPatrick Farrell     if (func) {
4734bbf5ea8SMatthew G. Knepley       patch->userpatchconstructionop = func;
4744bbf5ea8SMatthew G. Knepley       patch->userpatchconstructctx   = ctx;
475bdd9e0cdSPatrick Farrell     }
4764bbf5ea8SMatthew G. Knepley     break;
477d71ae5a4SJacob Faibussowitsch   default:
478d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)pc), PETSC_ERR_USER, "Unknown patch construction type %" PetscInt_FMT, (PetscInt)patch->ctype);
4794bbf5ea8SMatthew G. Knepley   }
4803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4814bbf5ea8SMatthew G. Knepley }
4824bbf5ea8SMatthew G. Knepley 
4834bbf5ea8SMatthew G. Knepley /* TODO: Docs */
484d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchGetConstructType(PC pc, PCPatchConstructType *ctype, PetscErrorCode (**func)(PC, PetscInt *, IS **, IS *, void *), void **ctx)
485d71ae5a4SJacob Faibussowitsch {
4864bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
4874bbf5ea8SMatthew G. Knepley 
4884bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
4894bbf5ea8SMatthew G. Knepley   *ctype = patch->ctype;
4904bbf5ea8SMatthew G. Knepley   switch (patch->ctype) {
4914bbf5ea8SMatthew G. Knepley   case PC_PATCH_STAR:
4924bbf5ea8SMatthew G. Knepley   case PC_PATCH_VANKA:
493d71ae5a4SJacob Faibussowitsch   case PC_PATCH_PARDECOMP:
494d71ae5a4SJacob Faibussowitsch     break;
4954bbf5ea8SMatthew G. Knepley   case PC_PATCH_USER:
4964bbf5ea8SMatthew G. Knepley   case PC_PATCH_PYTHON:
4974bbf5ea8SMatthew G. Knepley     *func = patch->userpatchconstructionop;
4984bbf5ea8SMatthew G. Knepley     *ctx  = patch->userpatchconstructctx;
4994bbf5ea8SMatthew G. Knepley     break;
500d71ae5a4SJacob Faibussowitsch   default:
501d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)pc), PETSC_ERR_USER, "Unknown patch construction type %" PetscInt_FMT, (PetscInt)patch->ctype);
5024bbf5ea8SMatthew G. Knepley   }
5033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5044bbf5ea8SMatthew G. Knepley }
5054bbf5ea8SMatthew G. Knepley 
5064bbf5ea8SMatthew G. Knepley /* TODO: Docs */
507d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetDiscretisationInfo(PC pc, PetscInt nsubspaces, DM *dms, PetscInt *bs, PetscInt *nodesPerCell, const PetscInt **cellNodeMap, const PetscInt *subspaceOffsets, PetscInt numGhostBcs, const PetscInt *ghostBcNodes, PetscInt numGlobalBcs, const PetscInt *globalBcNodes)
508d71ae5a4SJacob Faibussowitsch {
5094bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
510b6bb21d1SLawrence Mitchell   DM        dm, plex;
5114bbf5ea8SMatthew G. Knepley   PetscSF  *sfs;
5125f824522SMatthew G. Knepley   PetscInt  cStart, cEnd, i, j;
5134bbf5ea8SMatthew G. Knepley 
5144bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
5159566063dSJacob Faibussowitsch   PetscCall(PCGetDM(pc, &dm));
5169566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
517b6bb21d1SLawrence Mitchell   dm = plex;
5189566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
5199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsubspaces, &sfs));
5209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsubspaces, &patch->dofSection));
5219566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsubspaces, &patch->bs));
5229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsubspaces, &patch->nodesPerCell));
5239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsubspaces, &patch->cellNodeMap));
5249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsubspaces + 1, &patch->subspaceOffsets));
5254bbf5ea8SMatthew G. Knepley 
5264bbf5ea8SMatthew G. Knepley   patch->nsubspaces       = nsubspaces;
5274bbf5ea8SMatthew G. Knepley   patch->totalDofsPerCell = 0;
5284bbf5ea8SMatthew G. Knepley   for (i = 0; i < nsubspaces; ++i) {
5299566063dSJacob Faibussowitsch     PetscCall(DMGetLocalSection(dms[i], &patch->dofSection[i]));
5309566063dSJacob Faibussowitsch     PetscCall(PetscObjectReference((PetscObject)patch->dofSection[i]));
5319566063dSJacob Faibussowitsch     PetscCall(DMGetSectionSF(dms[i], &sfs[i]));
5324bbf5ea8SMatthew G. Knepley     patch->bs[i]           = bs[i];
5334bbf5ea8SMatthew G. Knepley     patch->nodesPerCell[i] = nodesPerCell[i];
5344bbf5ea8SMatthew G. Knepley     patch->totalDofsPerCell += nodesPerCell[i] * bs[i];
5359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1((cEnd - cStart) * nodesPerCell[i], &patch->cellNodeMap[i]));
53680e8a965SFlorian Wechsung     for (j = 0; j < (cEnd - cStart) * nodesPerCell[i]; ++j) patch->cellNodeMap[i][j] = cellNodeMap[i][j];
5374bbf5ea8SMatthew G. Knepley     patch->subspaceOffsets[i] = subspaceOffsets[i];
5384bbf5ea8SMatthew G. Knepley   }
5399566063dSJacob Faibussowitsch   PetscCall(PCPatchCreateDefaultSF_Private(pc, nsubspaces, sfs, patch->bs));
5409566063dSJacob Faibussowitsch   PetscCall(PetscFree(sfs));
5414bbf5ea8SMatthew G. Knepley 
5424bbf5ea8SMatthew G. Knepley   patch->subspaceOffsets[nsubspaces] = subspaceOffsets[nsubspaces];
5439566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGhostBcs, ghostBcNodes, PETSC_COPY_VALUES, &patch->ghostBcNodes));
5449566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGlobalBcs, globalBcNodes, PETSC_COPY_VALUES, &patch->globalBcNodes));
5459566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm));
5463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5474bbf5ea8SMatthew G. Knepley }
5484bbf5ea8SMatthew G. Knepley 
5494bbf5ea8SMatthew G. Knepley /* TODO: Docs */
550ba38deedSJacob Faibussowitsch static PetscErrorCode PCPatchSetDiscretisationInfoCombined(PC pc, DM dm, PetscInt *nodesPerCell, const PetscInt **cellNodeMap, PetscInt numGhostBcs, const PetscInt *ghostBcNodes, PetscInt numGlobalBcs, const PetscInt *globalBcNodes)
551d71ae5a4SJacob Faibussowitsch {
5525f824522SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
5535f824522SMatthew G. Knepley   PetscInt  cStart, cEnd, i, j;
5545f824522SMatthew G. Knepley 
5555f824522SMatthew G. Knepley   PetscFunctionBegin;
5565f824522SMatthew G. Knepley   patch->combined = PETSC_TRUE;
5579566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
5589566063dSJacob Faibussowitsch   PetscCall(DMGetNumFields(dm, &patch->nsubspaces));
5599566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(patch->nsubspaces, &patch->dofSection));
5609566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(patch->nsubspaces, &patch->bs));
5619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(patch->nsubspaces, &patch->nodesPerCell));
5629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(patch->nsubspaces, &patch->cellNodeMap));
5639566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(patch->nsubspaces + 1, &patch->subspaceOffsets));
5649566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &patch->dofSection[0]));
5659566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)patch->dofSection[0]));
5669566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(patch->dofSection[0], &patch->subspaceOffsets[patch->nsubspaces]));
5675f824522SMatthew G. Knepley   patch->totalDofsPerCell = 0;
5685f824522SMatthew G. Knepley   for (i = 0; i < patch->nsubspaces; ++i) {
5695f824522SMatthew G. Knepley     patch->bs[i]           = 1;
5705f824522SMatthew G. Knepley     patch->nodesPerCell[i] = nodesPerCell[i];
5715f824522SMatthew G. Knepley     patch->totalDofsPerCell += nodesPerCell[i];
5729566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1((cEnd - cStart) * nodesPerCell[i], &patch->cellNodeMap[i]));
5735f824522SMatthew G. Knepley     for (j = 0; j < (cEnd - cStart) * nodesPerCell[i]; ++j) patch->cellNodeMap[i][j] = cellNodeMap[i][j];
5745f824522SMatthew G. Knepley   }
5759566063dSJacob Faibussowitsch   PetscCall(DMGetSectionSF(dm, &patch->sectionSF));
5769566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)patch->sectionSF));
5779566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGhostBcs, ghostBcNodes, PETSC_COPY_VALUES, &patch->ghostBcNodes));
5789566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGlobalBcs, globalBcNodes, PETSC_COPY_VALUES, &patch->globalBcNodes));
5793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5805f824522SMatthew G. Knepley }
5815f824522SMatthew G. Knepley 
5825f824522SMatthew G. Knepley /*@C
58304c3f3b8SBarry Smith   PCPatchSetComputeFunction - Set the callback function used to compute patch residuals
58492d50984SMatthew G. Knepley 
58520f4b53cSBarry Smith   Logically Collective
58699b7e5c6SPatrick Farrell 
58792d50984SMatthew G. Knepley   Input Parameters:
58820f4b53cSBarry Smith + pc   - The `PC`
58904c3f3b8SBarry Smith . func - The callback function
59092d50984SMatthew G. Knepley - ctx  - The user context
59192d50984SMatthew G. Knepley 
59220f4b53cSBarry Smith   Calling sequence of `func`:
59320f4b53cSBarry Smith + pc               - The `PC`
5947a50e09dSPatrick Farrell . point            - The point
5957a50e09dSPatrick Farrell . x                - The input solution (not used in linear problems)
5967a50e09dSPatrick Farrell . f                - The patch residual vector
5977a50e09dSPatrick Farrell . cellIS           - An array of the cell numbers
59820f4b53cSBarry Smith . n                - The size of `dofsArray`
5997a50e09dSPatrick Farrell . dofsArray        - The dofmap for the dofs to be solved for
6007a50e09dSPatrick Farrell . dofsArrayWithAll - The dofmap for all dofs on the patch
6017a50e09dSPatrick Farrell - ctx              - The user context
6027a50e09dSPatrick Farrell 
60392d50984SMatthew G. Knepley   Level: advanced
60492d50984SMatthew G. Knepley 
605f1580f4eSBarry Smith   Note:
60604c3f3b8SBarry Smith   The entries of `f` (the output residual vector) have been set to zero before the call.
60792d50984SMatthew G. Knepley 
608562efe2eSBarry Smith .seealso: [](ch_ksp), `PCPatchSetComputeOperator()`, `PCPatchGetComputeOperator()`, `PCPatchSetDiscretisationInfo()`, `PCPatchSetComputeFunctionInteriorFacets()`
60992d50984SMatthew G. Knepley @*/
61004c3f3b8SBarry Smith PetscErrorCode PCPatchSetComputeFunction(PC pc, PetscErrorCode (*func)(PC pc, PetscInt point, Vec x, Vec f, IS cellIS, PetscInt n, const PetscInt *dofsArray, const PetscInt *dofsArrayWithAll, void *ctx), void *ctx)
611d71ae5a4SJacob Faibussowitsch {
61292d50984SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
61392d50984SMatthew G. Knepley 
61492d50984SMatthew G. Knepley   PetscFunctionBegin;
61592d50984SMatthew G. Knepley   patch->usercomputef    = func;
61692d50984SMatthew G. Knepley   patch->usercomputefctx = ctx;
6173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61892d50984SMatthew G. Knepley }
61992d50984SMatthew G. Knepley 
62092d50984SMatthew G. Knepley /*@C
62104c3f3b8SBarry Smith   PCPatchSetComputeFunctionInteriorFacets - Set the callback function used to compute facet integrals for patch residuals
62259109abcSLawrence Mitchell 
62320f4b53cSBarry Smith   Logically Collective
6247a50e09dSPatrick Farrell 
62559109abcSLawrence Mitchell   Input Parameters:
62620f4b53cSBarry Smith + pc   - The `PC`
62704c3f3b8SBarry Smith . func - The callback function
62859109abcSLawrence Mitchell - ctx  - The user context
62959109abcSLawrence Mitchell 
63020f4b53cSBarry Smith   Calling sequence of `func`:
63120f4b53cSBarry Smith + pc               - The `PC`
6327a50e09dSPatrick Farrell . point            - The point
6337a50e09dSPatrick Farrell . x                - The input solution (not used in linear problems)
6347a50e09dSPatrick Farrell . f                - The patch residual vector
6357a50e09dSPatrick Farrell . facetIS          - An array of the facet numbers
63620f4b53cSBarry Smith . n                - The size of `dofsArray`
6377a50e09dSPatrick Farrell . dofsArray        - The dofmap for the dofs to be solved for
6387a50e09dSPatrick Farrell . dofsArrayWithAll - The dofmap for all dofs on the patch
6397a50e09dSPatrick Farrell - ctx              - The user context
6407a50e09dSPatrick Farrell 
64159109abcSLawrence Mitchell   Level: advanced
64259109abcSLawrence Mitchell 
643f1580f4eSBarry Smith   Note:
64404c3f3b8SBarry Smith   The entries of `f` (the output residual vector) have been set to zero before the call.
64559109abcSLawrence Mitchell 
646562efe2eSBarry Smith .seealso: [](ch_ksp), `PCPatchSetComputeOperator()`, `PCPatchGetComputeOperator()`, `PCPatchSetDiscretisationInfo()`, `PCPatchSetComputeFunction()`
64759109abcSLawrence Mitchell @*/
64804c3f3b8SBarry Smith PetscErrorCode PCPatchSetComputeFunctionInteriorFacets(PC pc, PetscErrorCode (*func)(PC pc, PetscInt point, Vec x, Vec f, IS facetIS, PetscInt n, const PetscInt *dofsArray, const PetscInt *dofsArrayWithAll, void *ctx), void *ctx)
649d71ae5a4SJacob Faibussowitsch {
65059109abcSLawrence Mitchell   PC_PATCH *patch = (PC_PATCH *)pc->data;
65159109abcSLawrence Mitchell 
65259109abcSLawrence Mitchell   PetscFunctionBegin;
65359109abcSLawrence Mitchell   patch->usercomputefintfacet    = func;
65459109abcSLawrence Mitchell   patch->usercomputefintfacetctx = ctx;
6553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
65659109abcSLawrence Mitchell }
65759109abcSLawrence Mitchell 
65859109abcSLawrence Mitchell /*@C
65904c3f3b8SBarry Smith   PCPatchSetComputeOperator - Set the callback function used to compute patch matrices
6605f824522SMatthew G. Knepley 
66120f4b53cSBarry Smith   Logically Collective
6627a50e09dSPatrick Farrell 
6635f824522SMatthew G. Knepley   Input Parameters:
66420f4b53cSBarry Smith + pc   - The `PC`
66504c3f3b8SBarry Smith . func - The callback function
6665f824522SMatthew G. Knepley - ctx  - The user context
6675f824522SMatthew G. Knepley 
66820f4b53cSBarry Smith   Calling sequence of `func`:
66920f4b53cSBarry Smith + pc               - The `PC`
6707a50e09dSPatrick Farrell . point            - The point
6717a50e09dSPatrick Farrell . x                - The input solution (not used in linear problems)
6727a50e09dSPatrick Farrell . mat              - The patch matrix
67304c3f3b8SBarry Smith . facetIS          - An array of the cell numbers
67420f4b53cSBarry Smith . n                - The size of `dofsArray`
6757a50e09dSPatrick Farrell . dofsArray        - The dofmap for the dofs to be solved for
6767a50e09dSPatrick Farrell . dofsArrayWithAll - The dofmap for all dofs on the patch
6777a50e09dSPatrick Farrell - ctx              - The user context
6787a50e09dSPatrick Farrell 
6795f824522SMatthew G. Knepley   Level: advanced
6805f824522SMatthew G. Knepley 
681f1580f4eSBarry Smith   Note:
6827a50e09dSPatrick Farrell   The matrix entries have been set to zero before the call.
6835f824522SMatthew G. Knepley 
684562efe2eSBarry Smith .seealso: [](ch_ksp), `PCPatchGetComputeOperator()`, `PCPatchSetComputeFunction()`, `PCPatchSetDiscretisationInfo()`
6855f824522SMatthew G. Knepley @*/
68604c3f3b8SBarry Smith PetscErrorCode PCPatchSetComputeOperator(PC pc, PetscErrorCode (*func)(PC pc, PetscInt point, Vec x, Mat mat, IS facetIS, PetscInt n, const PetscInt *dofsArray, const PetscInt *dofsArrayWithAll, void *ctx), void *ctx)
687d71ae5a4SJacob Faibussowitsch {
6884bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
6894bbf5ea8SMatthew G. Knepley 
6904bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
6914bbf5ea8SMatthew G. Knepley   patch->usercomputeop    = func;
692723f9013SMatthew G. Knepley   patch->usercomputeopctx = ctx;
6933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6944bbf5ea8SMatthew G. Knepley }
6954bbf5ea8SMatthew G. Knepley 
69659109abcSLawrence Mitchell /*@C
69704c3f3b8SBarry Smith   PCPatchSetComputeOperatorInteriorFacets - Set the callback function used to compute facet integrals for patch matrices
69859109abcSLawrence Mitchell 
69920f4b53cSBarry Smith   Logically Collective
70099b7e5c6SPatrick Farrell 
70159109abcSLawrence Mitchell   Input Parameters:
70220f4b53cSBarry Smith + pc   - The `PC`
70304c3f3b8SBarry Smith . func - The callback function
70459109abcSLawrence Mitchell - ctx  - The user context
70559109abcSLawrence Mitchell 
70620f4b53cSBarry Smith   Calling sequence of `func`:
70720f4b53cSBarry Smith + pc               - The `PC`
7087a50e09dSPatrick Farrell . point            - The point
7097a50e09dSPatrick Farrell . x                - The input solution (not used in linear problems)
7107a50e09dSPatrick Farrell . mat              - The patch matrix
7117a50e09dSPatrick Farrell . facetIS          - An array of the facet numbers
71220f4b53cSBarry Smith . n                - The size of `dofsArray`
7137a50e09dSPatrick Farrell . dofsArray        - The dofmap for the dofs to be solved for
7147a50e09dSPatrick Farrell . dofsArrayWithAll - The dofmap for all dofs on the patch
7157a50e09dSPatrick Farrell - ctx              - The user context
7167a50e09dSPatrick Farrell 
71759109abcSLawrence Mitchell   Level: advanced
71859109abcSLawrence Mitchell 
719f1580f4eSBarry Smith   Note:
7207a50e09dSPatrick Farrell   The matrix entries have been set to zero before the call.
72159109abcSLawrence Mitchell 
722562efe2eSBarry Smith .seealso: [](ch_ksp), `PCPatchGetComputeOperator()`, `PCPatchSetComputeFunction()`, `PCPatchSetDiscretisationInfo()`
72359109abcSLawrence Mitchell @*/
72404c3f3b8SBarry Smith PetscErrorCode PCPatchSetComputeOperatorInteriorFacets(PC pc, PetscErrorCode (*func)(PC pc, PetscInt point, Vec x, Mat mat, IS facetIS, PetscInt n, const PetscInt *dofsArray, const PetscInt *dofsArrayWithAll, void *ctx), void *ctx)
725d71ae5a4SJacob Faibussowitsch {
72659109abcSLawrence Mitchell   PC_PATCH *patch = (PC_PATCH *)pc->data;
72759109abcSLawrence Mitchell 
72859109abcSLawrence Mitchell   PetscFunctionBegin;
72959109abcSLawrence Mitchell   patch->usercomputeopintfacet    = func;
73059109abcSLawrence Mitchell   patch->usercomputeopintfacetctx = ctx;
7313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
73259109abcSLawrence Mitchell }
73359109abcSLawrence Mitchell 
7344bbf5ea8SMatthew G. Knepley /* On entry, ht contains the topological entities whose dofs we are responsible for solving for;
7354bbf5ea8SMatthew G. Knepley    on exit, cht contains all the topological entities we need to compute their residuals.
7364bbf5ea8SMatthew G. Knepley    In full generality this should incorporate knowledge of the sparsity pattern of the matrix;
7374bbf5ea8SMatthew G. Knepley    here we assume a standard FE sparsity pattern.*/
7384bbf5ea8SMatthew G. Knepley /* TODO: Use DMPlexGetAdjacency() */
739d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchCompleteCellPatch(PC pc, PetscHSetI ht, PetscHSetI cht)
740d71ae5a4SJacob Faibussowitsch {
741b6bb21d1SLawrence Mitchell   DM            dm, plex;
742bc7fa33aSFlorian Wechsung   PC_PATCH     *patch = (PC_PATCH *)pc->data;
7431b68eb51SMatthew G. Knepley   PetscHashIter hi;
7444bbf5ea8SMatthew G. Knepley   PetscInt      point;
7454bbf5ea8SMatthew G. Knepley   PetscInt     *star = NULL, *closure = NULL;
7464c954380SMatthew G. Knepley   PetscInt      ignoredim, iStart = 0, iEnd = -1, starSize, closureSize, si, ci;
747bc7fa33aSFlorian Wechsung   PetscInt     *fStar = NULL, *fClosure = NULL;
748bc7fa33aSFlorian Wechsung   PetscInt      fBegin, fEnd, fsi, fci, fStarSize, fClosureSize;
7494bbf5ea8SMatthew G. Knepley 
7504bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
7519566063dSJacob Faibussowitsch   PetscCall(PCGetDM(pc, &dm));
7529566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
753b6bb21d1SLawrence Mitchell   dm = plex;
7549566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fBegin, &fEnd));
7559566063dSJacob Faibussowitsch   PetscCall(PCPatchGetIgnoreDim(pc, &ignoredim));
7569566063dSJacob Faibussowitsch   if (ignoredim >= 0) PetscCall(DMPlexGetDepthStratum(dm, ignoredim, &iStart, &iEnd));
7579566063dSJacob Faibussowitsch   PetscCall(PetscHSetIClear(cht));
7581b68eb51SMatthew G. Knepley   PetscHashIterBegin(ht, hi);
7591b68eb51SMatthew G. Knepley   while (!PetscHashIterAtEnd(ht, hi)) {
7601b68eb51SMatthew G. Knepley     PetscHashIterGetKey(ht, hi, point);
7611b68eb51SMatthew G. Knepley     PetscHashIterNext(ht, hi);
7624bbf5ea8SMatthew G. Knepley 
7634bbf5ea8SMatthew G. Knepley     /* Loop over all the cells that this point connects to */
7649566063dSJacob Faibussowitsch     PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_FALSE, &starSize, &star));
7655f824522SMatthew G. Knepley     for (si = 0; si < starSize * 2; si += 2) {
7664c954380SMatthew G. Knepley       const PetscInt ownedpoint = star[si];
7675f824522SMatthew G. Knepley       /* TODO Check for point in cht before running through closure again */
7684bbf5ea8SMatthew G. Knepley       /* now loop over all entities in the closure of that cell */
7699566063dSJacob Faibussowitsch       PetscCall(DMPlexGetTransitiveClosure(dm, ownedpoint, PETSC_TRUE, &closureSize, &closure));
7705f824522SMatthew G. Knepley       for (ci = 0; ci < closureSize * 2; ci += 2) {
7714c954380SMatthew G. Knepley         const PetscInt seenpoint = closure[ci];
7725f824522SMatthew G. Knepley         if (ignoredim >= 0 && seenpoint >= iStart && seenpoint < iEnd) continue;
7739566063dSJacob Faibussowitsch         PetscCall(PetscHSetIAdd(cht, seenpoint));
774bc7fa33aSFlorian Wechsung         /* Facet integrals couple dofs across facets, so in that case for each of
775f1580f4eSBarry Smith           the facets we need to add all dofs on the other side of the facet to
776f1580f4eSBarry Smith           the seen dofs. */
777bc7fa33aSFlorian Wechsung         if (patch->usercomputeopintfacet) {
778bc7fa33aSFlorian Wechsung           if (fBegin <= seenpoint && seenpoint < fEnd) {
7799566063dSJacob Faibussowitsch             PetscCall(DMPlexGetTransitiveClosure(dm, seenpoint, PETSC_FALSE, &fStarSize, &fStar));
780bc7fa33aSFlorian Wechsung             for (fsi = 0; fsi < fStarSize * 2; fsi += 2) {
7819566063dSJacob Faibussowitsch               PetscCall(DMPlexGetTransitiveClosure(dm, fStar[fsi], PETSC_TRUE, &fClosureSize, &fClosure));
78248a46eb9SPierre Jolivet               for (fci = 0; fci < fClosureSize * 2; fci += 2) PetscCall(PetscHSetIAdd(cht, fClosure[fci]));
7839566063dSJacob Faibussowitsch               PetscCall(DMPlexRestoreTransitiveClosure(dm, fStar[fsi], PETSC_TRUE, NULL, &fClosure));
784bc7fa33aSFlorian Wechsung             }
7859566063dSJacob Faibussowitsch             PetscCall(DMPlexRestoreTransitiveClosure(dm, seenpoint, PETSC_FALSE, NULL, &fStar));
786bc7fa33aSFlorian Wechsung           }
787bc7fa33aSFlorian Wechsung         }
7884bbf5ea8SMatthew G. Knepley       }
7899566063dSJacob Faibussowitsch       PetscCall(DMPlexRestoreTransitiveClosure(dm, ownedpoint, PETSC_TRUE, NULL, &closure));
7904bbf5ea8SMatthew G. Knepley     }
7919566063dSJacob Faibussowitsch     PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_FALSE, NULL, &star));
7924bbf5ea8SMatthew G. Knepley   }
7939566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm));
7943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7955f824522SMatthew G. Knepley }
7965f824522SMatthew G. Knepley 
797d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchGetGlobalDofs(PC pc, PetscSection dofSection[], PetscInt f, PetscBool combined, PetscInt p, PetscInt *dof, PetscInt *off)
798d71ae5a4SJacob Faibussowitsch {
7995f824522SMatthew G. Knepley   PetscFunctionBegin;
8005f824522SMatthew G. Knepley   if (combined) {
8015f824522SMatthew G. Knepley     if (f < 0) {
8029566063dSJacob Faibussowitsch       if (dof) PetscCall(PetscSectionGetDof(dofSection[0], p, dof));
8039566063dSJacob Faibussowitsch       if (off) PetscCall(PetscSectionGetOffset(dofSection[0], p, off));
8045f824522SMatthew G. Knepley     } else {
8059566063dSJacob Faibussowitsch       if (dof) PetscCall(PetscSectionGetFieldDof(dofSection[0], p, f, dof));
8069566063dSJacob Faibussowitsch       if (off) PetscCall(PetscSectionGetFieldOffset(dofSection[0], p, f, off));
8075f824522SMatthew G. Knepley     }
8085f824522SMatthew G. Knepley   } else {
8095f824522SMatthew G. Knepley     if (f < 0) {
8105f824522SMatthew G. Knepley       PC_PATCH *patch = (PC_PATCH *)pc->data;
8115f824522SMatthew G. Knepley       PetscInt  fdof, g;
8125f824522SMatthew G. Knepley 
8135f824522SMatthew G. Knepley       if (dof) {
8145f824522SMatthew G. Knepley         *dof = 0;
8155f824522SMatthew G. Knepley         for (g = 0; g < patch->nsubspaces; ++g) {
8169566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetDof(dofSection[g], p, &fdof));
8175f824522SMatthew G. Knepley           *dof += fdof;
8185f824522SMatthew G. Knepley         }
8195f824522SMatthew G. Knepley       }
820624e31c3SLawrence Mitchell       if (off) {
821624e31c3SLawrence Mitchell         *off = 0;
822624e31c3SLawrence Mitchell         for (g = 0; g < patch->nsubspaces; ++g) {
8239566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetOffset(dofSection[g], p, &fdof));
824624e31c3SLawrence Mitchell           *off += fdof;
825624e31c3SLawrence Mitchell         }
826624e31c3SLawrence Mitchell       }
8275f824522SMatthew G. Knepley     } else {
8289566063dSJacob Faibussowitsch       if (dof) PetscCall(PetscSectionGetDof(dofSection[f], p, dof));
8299566063dSJacob Faibussowitsch       if (off) PetscCall(PetscSectionGetOffset(dofSection[f], p, off));
8305f824522SMatthew G. Knepley     }
8315f824522SMatthew G. Knepley   }
8323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8334bbf5ea8SMatthew G. Knepley }
8344bbf5ea8SMatthew G. Knepley 
8354bbf5ea8SMatthew G. Knepley /* Given a hash table with a set of topological entities (pts), compute the degrees of
8364bbf5ea8SMatthew G. Knepley    freedom in global concatenated numbering on those entities.
8374bbf5ea8SMatthew G. Knepley    For Vanka smoothing, this needs to do something special: ignore dofs of the
8384bbf5ea8SMatthew G. Knepley    constraint subspace on entities that aren't the base entity we're building the patch
8394bbf5ea8SMatthew G. Knepley    around. */
840d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchGetPointDofs(PC pc, PetscHSetI pts, PetscHSetI dofs, PetscInt base, PetscHSetI *subspaces_to_exclude)
841d71ae5a4SJacob Faibussowitsch {
8425f824522SMatthew G. Knepley   PC_PATCH     *patch = (PC_PATCH *)pc->data;
8431b68eb51SMatthew G. Knepley   PetscHashIter hi;
8444bbf5ea8SMatthew G. Knepley   PetscInt      ldof, loff;
8454bbf5ea8SMatthew G. Knepley   PetscInt      k, p;
8464bbf5ea8SMatthew G. Knepley 
8474bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
8489566063dSJacob Faibussowitsch   PetscCall(PetscHSetIClear(dofs));
8494bbf5ea8SMatthew G. Knepley   for (k = 0; k < patch->nsubspaces; ++k) {
8504bbf5ea8SMatthew G. Knepley     PetscInt subspaceOffset = patch->subspaceOffsets[k];
8514bbf5ea8SMatthew G. Knepley     PetscInt bs             = patch->bs[k];
8524bbf5ea8SMatthew G. Knepley     PetscInt j, l;
8534bbf5ea8SMatthew G. Knepley 
854e4c66b91SPatrick Farrell     if (subspaces_to_exclude != NULL) {
855e4c66b91SPatrick Farrell       PetscBool should_exclude_k = PETSC_FALSE;
8569566063dSJacob Faibussowitsch       PetscCall(PetscHSetIHas(*subspaces_to_exclude, k, &should_exclude_k));
857e4c66b91SPatrick Farrell       if (should_exclude_k) {
8584bbf5ea8SMatthew G. Knepley         /* only get this subspace dofs at the base entity, not any others */
8599566063dSJacob Faibussowitsch         PetscCall(PCPatchGetGlobalDofs(pc, patch->dofSection, k, patch->combined, base, &ldof, &loff));
8604bbf5ea8SMatthew G. Knepley         if (0 == ldof) continue;
8614bbf5ea8SMatthew G. Knepley         for (j = loff; j < ldof + loff; ++j) {
8624bbf5ea8SMatthew G. Knepley           for (l = 0; l < bs; ++l) {
8634bbf5ea8SMatthew G. Knepley             PetscInt dof = bs * j + l + subspaceOffset;
8649566063dSJacob Faibussowitsch             PetscCall(PetscHSetIAdd(dofs, dof));
8654bbf5ea8SMatthew G. Knepley           }
8664bbf5ea8SMatthew G. Knepley         }
8674bbf5ea8SMatthew G. Knepley         continue; /* skip the other dofs of this subspace */
8684bbf5ea8SMatthew G. Knepley       }
869e4c66b91SPatrick Farrell     }
8704bbf5ea8SMatthew G. Knepley 
8711b68eb51SMatthew G. Knepley     PetscHashIterBegin(pts, hi);
8721b68eb51SMatthew G. Knepley     while (!PetscHashIterAtEnd(pts, hi)) {
8731b68eb51SMatthew G. Knepley       PetscHashIterGetKey(pts, hi, p);
8741b68eb51SMatthew G. Knepley       PetscHashIterNext(pts, hi);
8759566063dSJacob Faibussowitsch       PetscCall(PCPatchGetGlobalDofs(pc, patch->dofSection, k, patch->combined, p, &ldof, &loff));
8764bbf5ea8SMatthew G. Knepley       if (0 == ldof) continue;
8774bbf5ea8SMatthew G. Knepley       for (j = loff; j < ldof + loff; ++j) {
8784bbf5ea8SMatthew G. Knepley         for (l = 0; l < bs; ++l) {
8794bbf5ea8SMatthew G. Knepley           PetscInt dof = bs * j + l + subspaceOffset;
8809566063dSJacob Faibussowitsch           PetscCall(PetscHSetIAdd(dofs, dof));
8814bbf5ea8SMatthew G. Knepley         }
8824bbf5ea8SMatthew G. Knepley       }
8834bbf5ea8SMatthew G. Knepley     }
8844bbf5ea8SMatthew G. Knepley   }
8853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8864bbf5ea8SMatthew G. Knepley }
8874bbf5ea8SMatthew G. Knepley 
8884bbf5ea8SMatthew G. Knepley /* Given two hash tables A and B, compute the keys in B that are not in A, and put them in C */
889d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchComputeSetDifference_Private(PetscHSetI A, PetscHSetI B, PetscHSetI C)
890d71ae5a4SJacob Faibussowitsch {
8911b68eb51SMatthew G. Knepley   PetscHashIter hi;
8921b68eb51SMatthew G. Knepley   PetscInt      key;
8934bbf5ea8SMatthew G. Knepley   PetscBool     flg;
8944bbf5ea8SMatthew G. Knepley 
8954bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
8969566063dSJacob Faibussowitsch   PetscCall(PetscHSetIClear(C));
8971b68eb51SMatthew G. Knepley   PetscHashIterBegin(B, hi);
8981b68eb51SMatthew G. Knepley   while (!PetscHashIterAtEnd(B, hi)) {
8991b68eb51SMatthew G. Knepley     PetscHashIterGetKey(B, hi, key);
9001b68eb51SMatthew G. Knepley     PetscHashIterNext(B, hi);
9019566063dSJacob Faibussowitsch     PetscCall(PetscHSetIHas(A, key, &flg));
9029566063dSJacob Faibussowitsch     if (!flg) PetscCall(PetscHSetIAdd(C, key));
9034bbf5ea8SMatthew G. Knepley   }
9043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9054bbf5ea8SMatthew G. Knepley }
9064bbf5ea8SMatthew G. Knepley 
90704c3f3b8SBarry Smith // PetscClangLinter pragma disable: -fdoc-sowing-chars
9084bbf5ea8SMatthew G. Knepley /*
909f1580f4eSBarry Smith   PCPatchCreateCellPatches - create patches.
910f1580f4eSBarry Smith 
911f1580f4eSBarry Smith   Input Parameter:
912f1580f4eSBarry Smith   . dm - The DMPlex object defining the mesh
913f1580f4eSBarry Smith 
914f1580f4eSBarry Smith   Output Parameters:
915f1580f4eSBarry Smith   + cellCounts  - Section with counts of cells around each vertex
916f1580f4eSBarry Smith   . cells       - IS of the cell point indices of cells in each patch
917f1580f4eSBarry Smith   . pointCounts - Section with counts of cells around each vertex
918f1580f4eSBarry Smith   - point       - IS of the cell point indices of cells in each patch
9194bbf5ea8SMatthew G. Knepley  */
920d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchCreateCellPatches(PC pc)
921d71ae5a4SJacob Faibussowitsch {
9224bbf5ea8SMatthew G. Knepley   PC_PATCH       *patch = (PC_PATCH *)pc->data;
9235f824522SMatthew G. Knepley   DMLabel         ghost = NULL;
9244bbf5ea8SMatthew G. Knepley   DM              dm, plex;
92576ce8f1aSJose E. Roman   PetscHSetI      ht = NULL, cht = NULL;
9260e126c0bSLawrence Mitchell   PetscSection    cellCounts, pointCounts, intFacetCounts, extFacetCounts;
927eb62eeaaSLawrence Mitchell   PetscInt       *cellsArray, *pointsArray, *intFacetsArray, *extFacetsArray, *intFacetsToPatchCell;
9280e126c0bSLawrence Mitchell   PetscInt        numCells, numPoints, numIntFacets, numExtFacets;
9295f824522SMatthew G. Knepley   const PetscInt *leaves;
93033cbca70SPatrick Farrell   PetscInt        nleaves, pStart, pEnd, cStart, cEnd, vStart, vEnd, fStart, fEnd, v;
9315f824522SMatthew G. Knepley   PetscBool       isFiredrake;
9324bbf5ea8SMatthew G. Knepley 
9334bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
9344bbf5ea8SMatthew G. Knepley   /* Used to keep track of the cells in the patch. */
9359566063dSJacob Faibussowitsch   PetscCall(PetscHSetICreate(&ht));
9369566063dSJacob Faibussowitsch   PetscCall(PetscHSetICreate(&cht));
9374bbf5ea8SMatthew G. Knepley 
9389566063dSJacob Faibussowitsch   PetscCall(PCGetDM(pc, &dm));
93928b400f6SJacob Faibussowitsch   PetscCheck(dm, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONGSTATE, "DM not yet set on patch PC");
9409566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
941b6bb21d1SLawrence Mitchell   dm = plex;
9429566063dSJacob Faibussowitsch   PetscCall(DMPlexGetChart(dm, &pStart, &pEnd));
9439566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
9444bbf5ea8SMatthew G. Knepley 
9454bbf5ea8SMatthew G. Knepley   if (patch->user_patches) {
9469566063dSJacob Faibussowitsch     PetscCall(patch->userpatchconstructionop(pc, &patch->npatch, &patch->userIS, &patch->iterationSet, patch->userpatchconstructctx));
9479371c9d4SSatish Balay     vStart = 0;
9489371c9d4SSatish Balay     vEnd   = patch->npatch;
949e5b9877fSPatrick Farrell   } else if (patch->ctype == PC_PATCH_PARDECOMP) {
9509371c9d4SSatish Balay     vStart = 0;
9519371c9d4SSatish Balay     vEnd   = 1;
9525f824522SMatthew G. Knepley   } else if (patch->codim < 0) {
9539566063dSJacob Faibussowitsch     if (patch->dim < 0) PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd));
9549566063dSJacob Faibussowitsch     else PetscCall(DMPlexGetDepthStratum(dm, patch->dim, &vStart, &vEnd));
9559566063dSJacob Faibussowitsch   } else PetscCall(DMPlexGetHeightStratum(dm, patch->codim, &vStart, &vEnd));
9565f824522SMatthew G. Knepley   patch->npatch = vEnd - vStart;
9574bbf5ea8SMatthew G. Knepley 
9584bbf5ea8SMatthew G. Knepley   /* These labels mark the owned points.  We only create patches around points that this process owns. */
9599566063dSJacob Faibussowitsch   PetscCall(DMHasLabel(dm, "pyop2_ghost", &isFiredrake));
9605f824522SMatthew G. Knepley   if (isFiredrake) {
9619566063dSJacob Faibussowitsch     PetscCall(DMGetLabel(dm, "pyop2_ghost", &ghost));
9629566063dSJacob Faibussowitsch     PetscCall(DMLabelCreateIndex(ghost, pStart, pEnd));
9635f824522SMatthew G. Knepley   } else {
9645f824522SMatthew G. Knepley     PetscSF sf;
9655f824522SMatthew G. Knepley 
9669566063dSJacob Faibussowitsch     PetscCall(DMGetPointSF(dm, &sf));
9679566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL));
9685f824522SMatthew G. Knepley     nleaves = PetscMax(nleaves, 0);
9695f824522SMatthew G. Knepley   }
9704bbf5ea8SMatthew G. Knepley 
9719566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->cellCounts));
9729566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)patch->cellCounts, "Patch Cell Layout"));
9734bbf5ea8SMatthew G. Knepley   cellCounts = patch->cellCounts;
9749566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(cellCounts, vStart, vEnd));
9759566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->pointCounts));
9769566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)patch->pointCounts, "Patch Point Layout"));
9775f824522SMatthew G. Knepley   pointCounts = patch->pointCounts;
9789566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(pointCounts, vStart, vEnd));
9799566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->extFacetCounts));
9809566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)patch->extFacetCounts, "Patch Exterior Facet Layout"));
9810e126c0bSLawrence Mitchell   extFacetCounts = patch->extFacetCounts;
9829566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(extFacetCounts, vStart, vEnd));
9839566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->intFacetCounts));
9849566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)patch->intFacetCounts, "Patch Interior Facet Layout"));
9850e126c0bSLawrence Mitchell   intFacetCounts = patch->intFacetCounts;
9869566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(intFacetCounts, vStart, vEnd));
9875f824522SMatthew G. Knepley   /* Count cells and points in the patch surrounding each entity */
9889566063dSJacob Faibussowitsch   PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
9894bbf5ea8SMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
9901b68eb51SMatthew G. Knepley     PetscHashIter hi;
9915f824522SMatthew G. Knepley     PetscInt      chtSize, loc = -1;
9925f824522SMatthew G. Knepley     PetscBool     flg;
9934bbf5ea8SMatthew G. Knepley 
994b525f888SPatrick Farrell     if (!patch->user_patches && patch->ctype != PC_PATCH_PARDECOMP) {
9959566063dSJacob Faibussowitsch       if (ghost) PetscCall(DMLabelHasPoint(ghost, v, &flg));
9969371c9d4SSatish Balay       else {
9979371c9d4SSatish Balay         PetscCall(PetscFindInt(v, nleaves, leaves, &loc));
9989371c9d4SSatish Balay         flg = loc >= 0 ? PETSC_TRUE : PETSC_FALSE;
9999371c9d4SSatish Balay       }
10004bbf5ea8SMatthew G. Knepley       /* Not an owned entity, don't make a cell patch. */
10014bbf5ea8SMatthew G. Knepley       if (flg) continue;
10024bbf5ea8SMatthew G. Knepley     }
10034bbf5ea8SMatthew G. Knepley 
10049566063dSJacob Faibussowitsch     PetscCall(patch->patchconstructop((void *)patch, dm, v, ht));
10059566063dSJacob Faibussowitsch     PetscCall(PCPatchCompleteCellPatch(pc, ht, cht));
10069566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetSize(cht, &chtSize));
10074bbf5ea8SMatthew G. Knepley     /* empty patch, continue */
10084bbf5ea8SMatthew G. Knepley     if (chtSize == 0) continue;
10094bbf5ea8SMatthew G. Knepley 
10104bbf5ea8SMatthew G. Knepley     /* safe because size(cht) > 0 from above */
10111b68eb51SMatthew G. Knepley     PetscHashIterBegin(cht, hi);
10121b68eb51SMatthew G. Knepley     while (!PetscHashIterAtEnd(cht, hi)) {
10135f824522SMatthew G. Knepley       PetscInt point, pdof;
10144bbf5ea8SMatthew G. Knepley 
10151b68eb51SMatthew G. Knepley       PetscHashIterGetKey(cht, hi, point);
10160e126c0bSLawrence Mitchell       if (fStart <= point && point < fEnd) {
10170e126c0bSLawrence Mitchell         const PetscInt *support;
10180e126c0bSLawrence Mitchell         PetscInt        supportSize, p;
10190e126c0bSLawrence Mitchell         PetscBool       interior = PETSC_TRUE;
10209566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, point, &support));
10219566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
10220e126c0bSLawrence Mitchell         if (supportSize == 1) {
10230e126c0bSLawrence Mitchell           interior = PETSC_FALSE;
10240e126c0bSLawrence Mitchell         } else {
10250e126c0bSLawrence Mitchell           for (p = 0; p < supportSize; p++) {
10260e126c0bSLawrence Mitchell             PetscBool found;
10270e126c0bSLawrence Mitchell             /* FIXME: can I do this while iterating over cht? */
10289566063dSJacob Faibussowitsch             PetscCall(PetscHSetIHas(cht, support[p], &found));
10290e126c0bSLawrence Mitchell             if (!found) {
10300e126c0bSLawrence Mitchell               interior = PETSC_FALSE;
10310e126c0bSLawrence Mitchell               break;
10320e126c0bSLawrence Mitchell             }
10330e126c0bSLawrence Mitchell           }
10340e126c0bSLawrence Mitchell         }
10350e126c0bSLawrence Mitchell         if (interior) {
10369566063dSJacob Faibussowitsch           PetscCall(PetscSectionAddDof(intFacetCounts, v, 1));
10370e126c0bSLawrence Mitchell         } else {
10389566063dSJacob Faibussowitsch           PetscCall(PetscSectionAddDof(extFacetCounts, v, 1));
10390e126c0bSLawrence Mitchell         }
10400e126c0bSLawrence Mitchell       }
10419566063dSJacob Faibussowitsch       PetscCall(PCPatchGetGlobalDofs(pc, patch->dofSection, -1, patch->combined, point, &pdof, NULL));
10429566063dSJacob Faibussowitsch       if (pdof) PetscCall(PetscSectionAddDof(pointCounts, v, 1));
10439566063dSJacob Faibussowitsch       if (point >= cStart && point < cEnd) PetscCall(PetscSectionAddDof(cellCounts, v, 1));
10441b68eb51SMatthew G. Knepley       PetscHashIterNext(cht, hi);
10454bbf5ea8SMatthew G. Knepley     }
10464bbf5ea8SMatthew G. Knepley   }
10479566063dSJacob Faibussowitsch   if (isFiredrake) PetscCall(DMLabelDestroyIndex(ghost));
10484bbf5ea8SMatthew G. Knepley 
10499566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(cellCounts));
10509566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(cellCounts, &numCells));
10519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numCells, &cellsArray));
10529566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(pointCounts));
10539566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(pointCounts, &numPoints));
10549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numPoints, &pointsArray));
10554bbf5ea8SMatthew G. Knepley 
10569566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(intFacetCounts));
10579566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(extFacetCounts));
10589566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(intFacetCounts, &numIntFacets));
10599566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(extFacetCounts, &numExtFacets));
10609566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numIntFacets, &intFacetsArray));
10619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numIntFacets * 2, &intFacetsToPatchCell));
10629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numExtFacets, &extFacetsArray));
10630e126c0bSLawrence Mitchell 
10644bbf5ea8SMatthew G. Knepley   /* Now that we know how much space we need, run through again and actually remember the cells. */
10654bbf5ea8SMatthew G. Knepley   for (v = vStart; v < vEnd; v++) {
10661b68eb51SMatthew G. Knepley     PetscHashIter hi;
10670e126c0bSLawrence Mitchell     PetscInt      dof, off, cdof, coff, efdof, efoff, ifdof, ifoff, pdof, n = 0, cn = 0, ifn = 0, efn = 0;
10684bbf5ea8SMatthew G. Knepley 
10699566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(pointCounts, v, &dof));
10709566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(pointCounts, v, &off));
10719566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(cellCounts, v, &cdof));
10729566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(cellCounts, v, &coff));
10739566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(intFacetCounts, v, &ifdof));
10749566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(intFacetCounts, v, &ifoff));
10759566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(extFacetCounts, v, &efdof));
10769566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(extFacetCounts, v, &efoff));
10775f824522SMatthew G. Knepley     if (dof <= 0) continue;
10789566063dSJacob Faibussowitsch     PetscCall(patch->patchconstructop((void *)patch, dm, v, ht));
10799566063dSJacob Faibussowitsch     PetscCall(PCPatchCompleteCellPatch(pc, ht, cht));
10801b68eb51SMatthew G. Knepley     PetscHashIterBegin(cht, hi);
10811b68eb51SMatthew G. Knepley     while (!PetscHashIterAtEnd(cht, hi)) {
10824bbf5ea8SMatthew G. Knepley       PetscInt point;
10834bbf5ea8SMatthew G. Knepley 
10841b68eb51SMatthew G. Knepley       PetscHashIterGetKey(cht, hi, point);
10850e126c0bSLawrence Mitchell       if (fStart <= point && point < fEnd) {
10860e126c0bSLawrence Mitchell         const PetscInt *support;
10870e126c0bSLawrence Mitchell         PetscInt        supportSize, p;
10880e126c0bSLawrence Mitchell         PetscBool       interior = PETSC_TRUE;
10899566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupport(dm, point, &support));
10909566063dSJacob Faibussowitsch         PetscCall(DMPlexGetSupportSize(dm, point, &supportSize));
10910e126c0bSLawrence Mitchell         if (supportSize == 1) {
10920e126c0bSLawrence Mitchell           interior = PETSC_FALSE;
10930e126c0bSLawrence Mitchell         } else {
10940e126c0bSLawrence Mitchell           for (p = 0; p < supportSize; p++) {
10950e126c0bSLawrence Mitchell             PetscBool found;
10960e126c0bSLawrence Mitchell             /* FIXME: can I do this while iterating over cht? */
10979566063dSJacob Faibussowitsch             PetscCall(PetscHSetIHas(cht, support[p], &found));
10980e126c0bSLawrence Mitchell             if (!found) {
10990e126c0bSLawrence Mitchell               interior = PETSC_FALSE;
11000e126c0bSLawrence Mitchell               break;
11010e126c0bSLawrence Mitchell             }
11020e126c0bSLawrence Mitchell           }
11030e126c0bSLawrence Mitchell         }
11040e126c0bSLawrence Mitchell         if (interior) {
110544b625f7SLawrence Mitchell           intFacetsToPatchCell[2 * (ifoff + ifn)]     = support[0];
110644b625f7SLawrence Mitchell           intFacetsToPatchCell[2 * (ifoff + ifn) + 1] = support[1];
11070e126c0bSLawrence Mitchell           intFacetsArray[ifoff + ifn++]               = point;
11080e126c0bSLawrence Mitchell         } else {
11090e126c0bSLawrence Mitchell           extFacetsArray[efoff + efn++] = point;
11100e126c0bSLawrence Mitchell         }
11110e126c0bSLawrence Mitchell       }
11129566063dSJacob Faibussowitsch       PetscCall(PCPatchGetGlobalDofs(pc, patch->dofSection, -1, patch->combined, point, &pdof, NULL));
1113ad540459SPierre Jolivet       if (pdof) pointsArray[off + n++] = point;
1114ad540459SPierre Jolivet       if (point >= cStart && point < cEnd) cellsArray[coff + cn++] = point;
11151b68eb51SMatthew G. Knepley       PetscHashIterNext(cht, hi);
11164bbf5ea8SMatthew G. Knepley     }
111763a3b9bcSJacob Faibussowitsch     PetscCheck(ifn == ifdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of interior facets in patch %" PetscInt_FMT " is %" PetscInt_FMT ", but should be %" PetscInt_FMT, v, ifn, ifdof);
111863a3b9bcSJacob Faibussowitsch     PetscCheck(efn == efdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of exterior facets in patch %" PetscInt_FMT " is %" PetscInt_FMT ", but should be %" PetscInt_FMT, v, efn, efdof);
111963a3b9bcSJacob Faibussowitsch     PetscCheck(cn == cdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of cells in patch %" PetscInt_FMT " is %" PetscInt_FMT ", but should be %" PetscInt_FMT, v, cn, cdof);
112063a3b9bcSJacob Faibussowitsch     PetscCheck(n == dof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of points in patch %" PetscInt_FMT " is %" PetscInt_FMT ", but should be %" PetscInt_FMT, v, n, dof);
1121eb62eeaaSLawrence Mitchell 
1122eb62eeaaSLawrence Mitchell     for (ifn = 0; ifn < ifdof; ifn++) {
112344b625f7SLawrence Mitchell       PetscInt  cell0  = intFacetsToPatchCell[2 * (ifoff + ifn)];
112444b625f7SLawrence Mitchell       PetscInt  cell1  = intFacetsToPatchCell[2 * (ifoff + ifn) + 1];
1125eb62eeaaSLawrence Mitchell       PetscBool found0 = PETSC_FALSE, found1 = PETSC_FALSE;
1126eb62eeaaSLawrence Mitchell       for (n = 0; n < cdof; n++) {
11277c54fef0SLawrence Mitchell         if (!found0 && cell0 == cellsArray[coff + n]) {
1128c3faab33SLawrence Mitchell           intFacetsToPatchCell[2 * (ifoff + ifn)] = n;
1129eb62eeaaSLawrence Mitchell           found0                                  = PETSC_TRUE;
1130eb62eeaaSLawrence Mitchell         }
11317c54fef0SLawrence Mitchell         if (!found1 && cell1 == cellsArray[coff + n]) {
1132c3faab33SLawrence Mitchell           intFacetsToPatchCell[2 * (ifoff + ifn) + 1] = n;
113380fc4459SLawrence Mitchell           found1                                      = PETSC_TRUE;
1134eb62eeaaSLawrence Mitchell         }
1135eb62eeaaSLawrence Mitchell         if (found0 && found1) break;
1136eb62eeaaSLawrence Mitchell       }
11377827d75bSBarry Smith       PetscCheck(found0 && found1, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Didn't manage to find local point numbers for facet support");
1138eb62eeaaSLawrence Mitchell     }
11394bbf5ea8SMatthew G. Knepley   }
11409566063dSJacob Faibussowitsch   PetscCall(PetscHSetIDestroy(&ht));
11419566063dSJacob Faibussowitsch   PetscCall(PetscHSetIDestroy(&cht));
11425f824522SMatthew G. Knepley 
11439566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numCells, cellsArray, PETSC_OWN_POINTER, &patch->cells));
11449566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)patch->cells, "Patch Cells"));
11455f824522SMatthew G. Knepley   if (patch->viewCells) {
11469566063dSJacob Faibussowitsch     PetscCall(ObjectView((PetscObject)patch->cellCounts, patch->viewerCells, patch->formatCells));
11479566063dSJacob Faibussowitsch     PetscCall(ObjectView((PetscObject)patch->cells, patch->viewerCells, patch->formatCells));
11485f824522SMatthew G. Knepley   }
11499566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numIntFacets, intFacetsArray, PETSC_OWN_POINTER, &patch->intFacets));
11509566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)patch->intFacets, "Patch Interior Facets"));
11519566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * numIntFacets, intFacetsToPatchCell, PETSC_OWN_POINTER, &patch->intFacetsToPatchCell));
11529566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)patch->intFacetsToPatchCell, "Patch Interior Facets local support"));
11530e126c0bSLawrence Mitchell   if (patch->viewIntFacets) {
11549566063dSJacob Faibussowitsch     PetscCall(ObjectView((PetscObject)patch->intFacetCounts, patch->viewerIntFacets, patch->formatIntFacets));
11559566063dSJacob Faibussowitsch     PetscCall(ObjectView((PetscObject)patch->intFacets, patch->viewerIntFacets, patch->formatIntFacets));
11569566063dSJacob Faibussowitsch     PetscCall(ObjectView((PetscObject)patch->intFacetsToPatchCell, patch->viewerIntFacets, patch->formatIntFacets));
11570e126c0bSLawrence Mitchell   }
11589566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numExtFacets, extFacetsArray, PETSC_OWN_POINTER, &patch->extFacets));
11599566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)patch->extFacets, "Patch Exterior Facets"));
11600e126c0bSLawrence Mitchell   if (patch->viewExtFacets) {
11619566063dSJacob Faibussowitsch     PetscCall(ObjectView((PetscObject)patch->extFacetCounts, patch->viewerExtFacets, patch->formatExtFacets));
11629566063dSJacob Faibussowitsch     PetscCall(ObjectView((PetscObject)patch->extFacets, patch->viewerExtFacets, patch->formatExtFacets));
11630e126c0bSLawrence Mitchell   }
11649566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numPoints, pointsArray, PETSC_OWN_POINTER, &patch->points));
11659566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)patch->points, "Patch Points"));
11665f824522SMatthew G. Knepley   if (patch->viewPoints) {
11679566063dSJacob Faibussowitsch     PetscCall(ObjectView((PetscObject)patch->pointCounts, patch->viewerPoints, patch->formatPoints));
11689566063dSJacob Faibussowitsch     PetscCall(ObjectView((PetscObject)patch->points, patch->viewerPoints, patch->formatPoints));
11695f824522SMatthew G. Knepley   }
11709566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm));
11713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11724bbf5ea8SMatthew G. Knepley }
11734bbf5ea8SMatthew G. Knepley 
11744bbf5ea8SMatthew G. Knepley /*
1175f1580f4eSBarry Smith   PCPatchCreateCellPatchDiscretisationInfo - Build the dof maps for cell patches
1176f1580f4eSBarry Smith 
1177f1580f4eSBarry Smith   Input Parameters:
1178f1580f4eSBarry Smith   + dm - The DMPlex object defining the mesh
1179f1580f4eSBarry Smith   . cellCounts - Section with counts of cells around each vertex
1180f1580f4eSBarry Smith   . cells - IS of the cell point indices of cells in each patch
1181f1580f4eSBarry Smith   . cellNumbering - Section mapping plex cell points to Firedrake cell indices.
1182f1580f4eSBarry Smith   . nodesPerCell - number of nodes per cell.
1183f1580f4eSBarry Smith   - cellNodeMap - map from cells to node indices (nodesPerCell * numCells)
1184f1580f4eSBarry Smith 
1185f1580f4eSBarry Smith   Output Parameters:
1186f1580f4eSBarry Smith   + dofs - IS of local dof numbers of each cell in the patch, where local is a patch local numbering
1187f1580f4eSBarry Smith   . gtolCounts - Section with counts of dofs per cell patch
1188f1580f4eSBarry Smith   - gtol - IS mapping from global dofs to local dofs for each patch.
11894bbf5ea8SMatthew G. Knepley  */
1190d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchCreateCellPatchDiscretisationInfo(PC pc)
1191d71ae5a4SJacob Faibussowitsch {
11924bbf5ea8SMatthew G. Knepley   PC_PATCH       *patch       = (PC_PATCH *)pc->data;
11934bbf5ea8SMatthew G. Knepley   PetscSection    cellCounts  = patch->cellCounts;
11945f824522SMatthew G. Knepley   PetscSection    pointCounts = patch->pointCounts;
11950904074fSPatrick Farrell   PetscSection    gtolCounts, gtolCountsWithArtificial = NULL, gtolCountsWithAll = NULL;
11964bbf5ea8SMatthew G. Knepley   IS              cells         = patch->cells;
11975f824522SMatthew G. Knepley   IS              points        = patch->points;
11984bbf5ea8SMatthew G. Knepley   PetscSection    cellNumbering = patch->cellNumbering;
11995f824522SMatthew G. Knepley   PetscInt        Nf            = patch->nsubspaces;
12005f824522SMatthew G. Knepley   PetscInt        numCells, numPoints;
12014bbf5ea8SMatthew G. Knepley   PetscInt        numDofs;
12020904074fSPatrick Farrell   PetscInt        numGlobalDofs, numGlobalDofsWithArtificial, numGlobalDofsWithAll;
12034bbf5ea8SMatthew G. Knepley   PetscInt        totalDofsPerCell = patch->totalDofsPerCell;
12044bbf5ea8SMatthew G. Knepley   PetscInt        vStart, vEnd, v;
12055f824522SMatthew G. Knepley   const PetscInt *cellsArray, *pointsArray;
12064bbf5ea8SMatthew G. Knepley   PetscInt       *newCellsArray                 = NULL;
12074bbf5ea8SMatthew G. Knepley   PetscInt       *dofsArray                     = NULL;
1208c2e6f3c0SFlorian Wechsung   PetscInt       *dofsArrayWithArtificial       = NULL;
12090904074fSPatrick Farrell   PetscInt       *dofsArrayWithAll              = NULL;
12105f824522SMatthew G. Knepley   PetscInt       *offsArray                     = NULL;
1211c2e6f3c0SFlorian Wechsung   PetscInt       *offsArrayWithArtificial       = NULL;
12120904074fSPatrick Farrell   PetscInt       *offsArrayWithAll              = NULL;
12134bbf5ea8SMatthew G. Knepley   PetscInt       *asmArray                      = NULL;
1214c2e6f3c0SFlorian Wechsung   PetscInt       *asmArrayWithArtificial        = NULL;
12150904074fSPatrick Farrell   PetscInt       *asmArrayWithAll               = NULL;
12164bbf5ea8SMatthew G. Knepley   PetscInt       *globalDofsArray               = NULL;
1217c2e6f3c0SFlorian Wechsung   PetscInt       *globalDofsArrayWithArtificial = NULL;
12180904074fSPatrick Farrell   PetscInt       *globalDofsArrayWithAll        = NULL;
12194bbf5ea8SMatthew G. Knepley   PetscInt        globalIndex                   = 0;
12204bbf5ea8SMatthew G. Knepley   PetscInt        key                           = 0;
12214bbf5ea8SMatthew G. Knepley   PetscInt        asmKey                        = 0;
1222b6bb21d1SLawrence Mitchell   DM              dm                            = NULL, plex;
1223557beb66SLawrence Mitchell   const PetscInt *bcNodes                       = NULL;
12241b68eb51SMatthew G. Knepley   PetscHMapI      ht;
1225c2e6f3c0SFlorian Wechsung   PetscHMapI      htWithArtificial;
12260904074fSPatrick Farrell   PetscHMapI      htWithAll;
12271b68eb51SMatthew G. Knepley   PetscHSetI      globalBcs;
1228557beb66SLawrence Mitchell   PetscInt        numBcs;
12291b68eb51SMatthew G. Knepley   PetscHSetI      ownedpts, seenpts, owneddofs, seendofs, artificialbcs;
1230cda239d9SMatthew G. Knepley   PetscInt        pStart, pEnd, p, i;
123110534d48SPatrick Farrell   char            option[PETSC_MAX_PATH_LEN];
123239fd2e8aSPatrick Farrell   PetscBool       isNonlinear;
12334bbf5ea8SMatthew G. Knepley 
12344bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
12359566063dSJacob Faibussowitsch   PetscCall(PCGetDM(pc, &dm));
12369566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
1237b6bb21d1SLawrence Mitchell   dm = plex;
12384bbf5ea8SMatthew G. Knepley   /* dofcounts section is cellcounts section * dofPerCell */
12399566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(cellCounts, &numCells));
12409566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(patch->pointCounts, &numPoints));
12414bbf5ea8SMatthew G. Knepley   numDofs = numCells * totalDofsPerCell;
12429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numDofs, &dofsArray));
12439566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numPoints * Nf, &offsArray));
12449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numDofs, &asmArray));
12459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numCells, &newCellsArray));
12469566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(cellCounts, &vStart, &vEnd));
12479566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->gtolCounts));
12484bbf5ea8SMatthew G. Knepley   gtolCounts = patch->gtolCounts;
12499566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetChart(gtolCounts, vStart, vEnd));
12509566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)patch->gtolCounts, "Patch Global Index Section"));
12514bbf5ea8SMatthew G. Knepley 
1252b6bb21d1SLawrence Mitchell   if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) {
12539566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numPoints * Nf, &offsArrayWithArtificial));
12549566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numDofs, &asmArrayWithArtificial));
12559566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numDofs, &dofsArrayWithArtificial));
12569566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->gtolCountsWithArtificial));
1257c2e6f3c0SFlorian Wechsung     gtolCountsWithArtificial = patch->gtolCountsWithArtificial;
12589566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(gtolCountsWithArtificial, vStart, vEnd));
12599566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)patch->gtolCountsWithArtificial, "Patch Global Index Section Including Artificial BCs"));
1260c2e6f3c0SFlorian Wechsung   }
1261c2e6f3c0SFlorian Wechsung 
12620904074fSPatrick Farrell   isNonlinear = patch->isNonlinear;
1263b6bb21d1SLawrence Mitchell   if (isNonlinear) {
12649566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numPoints * Nf, &offsArrayWithAll));
12659566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numDofs, &asmArrayWithAll));
12669566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numDofs, &dofsArrayWithAll));
12679566063dSJacob Faibussowitsch     PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->gtolCountsWithAll));
12680904074fSPatrick Farrell     gtolCountsWithAll = patch->gtolCountsWithAll;
12699566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(gtolCountsWithAll, vStart, vEnd));
12709566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)patch->gtolCountsWithAll, "Patch Global Index Section Including All BCs"));
12710904074fSPatrick Farrell   }
12720904074fSPatrick Farrell 
1273557beb66SLawrence Mitchell   /* Outside the patch loop, get the dofs that are globally-enforced Dirichlet
1274557beb66SLawrence Mitchell    conditions */
12759566063dSJacob Faibussowitsch   PetscCall(PetscHSetICreate(&globalBcs));
12769566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(patch->ghostBcNodes, &bcNodes));
12779566063dSJacob Faibussowitsch   PetscCall(ISGetSize(patch->ghostBcNodes, &numBcs));
12789371c9d4SSatish Balay   for (i = 0; i < numBcs; ++i) { PetscCall(PetscHSetIAdd(globalBcs, bcNodes[i])); /* these are already in concatenated numbering */ }
12799566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(patch->ghostBcNodes, &bcNodes));
12809566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->ghostBcNodes)); /* memory optimisation */
1281557beb66SLawrence Mitchell 
1282557beb66SLawrence Mitchell   /* Hash tables for artificial BC construction */
12839566063dSJacob Faibussowitsch   PetscCall(PetscHSetICreate(&ownedpts));
12849566063dSJacob Faibussowitsch   PetscCall(PetscHSetICreate(&seenpts));
12859566063dSJacob Faibussowitsch   PetscCall(PetscHSetICreate(&owneddofs));
12869566063dSJacob Faibussowitsch   PetscCall(PetscHSetICreate(&seendofs));
12879566063dSJacob Faibussowitsch   PetscCall(PetscHSetICreate(&artificialbcs));
1288557beb66SLawrence Mitchell 
12899566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(cells, &cellsArray));
12909566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(points, &pointsArray));
12919566063dSJacob Faibussowitsch   PetscCall(PetscHMapICreate(&ht));
12929566063dSJacob Faibussowitsch   PetscCall(PetscHMapICreate(&htWithArtificial));
12939566063dSJacob Faibussowitsch   PetscCall(PetscHMapICreate(&htWithAll));
12944bbf5ea8SMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
12954bbf5ea8SMatthew G. Knepley     PetscInt localIndex               = 0;
1296c2e6f3c0SFlorian Wechsung     PetscInt localIndexWithArtificial = 0;
12970904074fSPatrick Farrell     PetscInt localIndexWithAll        = 0;
12984bbf5ea8SMatthew G. Knepley     PetscInt dof, off, i, j, k, l;
12994bbf5ea8SMatthew G. Knepley 
13009566063dSJacob Faibussowitsch     PetscCall(PetscHMapIClear(ht));
13019566063dSJacob Faibussowitsch     PetscCall(PetscHMapIClear(htWithArtificial));
13029566063dSJacob Faibussowitsch     PetscCall(PetscHMapIClear(htWithAll));
13039566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(cellCounts, v, &dof));
13049566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(cellCounts, v, &off));
13054bbf5ea8SMatthew G. Knepley     if (dof <= 0) continue;
13064bbf5ea8SMatthew G. Knepley 
1307557beb66SLawrence Mitchell     /* Calculate the global numbers of the artificial BC dofs here first */
13089566063dSJacob Faibussowitsch     PetscCall(patch->patchconstructop((void *)patch, dm, v, ownedpts));
13099566063dSJacob Faibussowitsch     PetscCall(PCPatchCompleteCellPatch(pc, ownedpts, seenpts));
13109566063dSJacob Faibussowitsch     PetscCall(PCPatchGetPointDofs(pc, ownedpts, owneddofs, v, &patch->subspaces_to_exclude));
13119566063dSJacob Faibussowitsch     PetscCall(PCPatchGetPointDofs(pc, seenpts, seendofs, v, NULL));
13129566063dSJacob Faibussowitsch     PetscCall(PCPatchComputeSetDifference_Private(owneddofs, seendofs, artificialbcs));
13138135ed82SLawrence Mitchell     if (patch->viewPatches) {
13141b68eb51SMatthew G. Knepley       PetscHSetI    globalbcdofs;
13151b68eb51SMatthew G. Knepley       PetscHashIter hi;
13168135ed82SLawrence Mitchell       MPI_Comm      comm = PetscObjectComm((PetscObject)pc);
13171b68eb51SMatthew G. Knepley 
13189566063dSJacob Faibussowitsch       PetscCall(PetscHSetICreate(&globalbcdofs));
131963a3b9bcSJacob Faibussowitsch       PetscCall(PetscSynchronizedPrintf(comm, "Patch %" PetscInt_FMT ": owned dofs:\n", v));
13201b68eb51SMatthew G. Knepley       PetscHashIterBegin(owneddofs, hi);
13211b68eb51SMatthew G. Knepley       while (!PetscHashIterAtEnd(owneddofs, hi)) {
13228135ed82SLawrence Mitchell         PetscInt globalDof;
13238135ed82SLawrence Mitchell 
13241b68eb51SMatthew G. Knepley         PetscHashIterGetKey(owneddofs, hi, globalDof);
13251b68eb51SMatthew G. Knepley         PetscHashIterNext(owneddofs, hi);
132663a3b9bcSJacob Faibussowitsch         PetscCall(PetscSynchronizedPrintf(comm, "%" PetscInt_FMT " ", globalDof));
13278135ed82SLawrence Mitchell       }
13289566063dSJacob Faibussowitsch       PetscCall(PetscSynchronizedPrintf(comm, "\n"));
132963a3b9bcSJacob Faibussowitsch       PetscCall(PetscSynchronizedPrintf(comm, "Patch %" PetscInt_FMT ": seen dofs:\n", v));
13301b68eb51SMatthew G. Knepley       PetscHashIterBegin(seendofs, hi);
13311b68eb51SMatthew G. Knepley       while (!PetscHashIterAtEnd(seendofs, hi)) {
13328135ed82SLawrence Mitchell         PetscInt  globalDof;
13338135ed82SLawrence Mitchell         PetscBool flg;
13348135ed82SLawrence Mitchell 
13351b68eb51SMatthew G. Knepley         PetscHashIterGetKey(seendofs, hi, globalDof);
13361b68eb51SMatthew G. Knepley         PetscHashIterNext(seendofs, hi);
133763a3b9bcSJacob Faibussowitsch         PetscCall(PetscSynchronizedPrintf(comm, "%" PetscInt_FMT " ", globalDof));
13388135ed82SLawrence Mitchell 
13399566063dSJacob Faibussowitsch         PetscCall(PetscHSetIHas(globalBcs, globalDof, &flg));
13409566063dSJacob Faibussowitsch         if (flg) PetscCall(PetscHSetIAdd(globalbcdofs, globalDof));
13418135ed82SLawrence Mitchell       }
13429566063dSJacob Faibussowitsch       PetscCall(PetscSynchronizedPrintf(comm, "\n"));
134363a3b9bcSJacob Faibussowitsch       PetscCall(PetscSynchronizedPrintf(comm, "Patch %" PetscInt_FMT ": global BCs:\n", v));
13449566063dSJacob Faibussowitsch       PetscCall(PetscHSetIGetSize(globalbcdofs, &numBcs));
13458135ed82SLawrence Mitchell       if (numBcs > 0) {
13461b68eb51SMatthew G. Knepley         PetscHashIterBegin(globalbcdofs, hi);
13471b68eb51SMatthew G. Knepley         while (!PetscHashIterAtEnd(globalbcdofs, hi)) {
13488135ed82SLawrence Mitchell           PetscInt globalDof;
13491b68eb51SMatthew G. Knepley           PetscHashIterGetKey(globalbcdofs, hi, globalDof);
13501b68eb51SMatthew G. Knepley           PetscHashIterNext(globalbcdofs, hi);
135163a3b9bcSJacob Faibussowitsch           PetscCall(PetscSynchronizedPrintf(comm, "%" PetscInt_FMT " ", globalDof));
13528135ed82SLawrence Mitchell         }
13538135ed82SLawrence Mitchell       }
13549566063dSJacob Faibussowitsch       PetscCall(PetscSynchronizedPrintf(comm, "\n"));
135563a3b9bcSJacob Faibussowitsch       PetscCall(PetscSynchronizedPrintf(comm, "Patch %" PetscInt_FMT ": artificial BCs:\n", v));
13569566063dSJacob Faibussowitsch       PetscCall(PetscHSetIGetSize(artificialbcs, &numBcs));
13578135ed82SLawrence Mitchell       if (numBcs > 0) {
13581b68eb51SMatthew G. Knepley         PetscHashIterBegin(artificialbcs, hi);
13591b68eb51SMatthew G. Knepley         while (!PetscHashIterAtEnd(artificialbcs, hi)) {
13608135ed82SLawrence Mitchell           PetscInt globalDof;
13611b68eb51SMatthew G. Knepley           PetscHashIterGetKey(artificialbcs, hi, globalDof);
13621b68eb51SMatthew G. Knepley           PetscHashIterNext(artificialbcs, hi);
136363a3b9bcSJacob Faibussowitsch           PetscCall(PetscSynchronizedPrintf(comm, "%" PetscInt_FMT " ", globalDof));
13648135ed82SLawrence Mitchell         }
13658135ed82SLawrence Mitchell       }
13669566063dSJacob Faibussowitsch       PetscCall(PetscSynchronizedPrintf(comm, "\n\n"));
13679566063dSJacob Faibussowitsch       PetscCall(PetscHSetIDestroy(&globalbcdofs));
13688135ed82SLawrence Mitchell     }
13694bbf5ea8SMatthew G. Knepley     for (k = 0; k < patch->nsubspaces; ++k) {
13704bbf5ea8SMatthew G. Knepley       const PetscInt *cellNodeMap    = patch->cellNodeMap[k];
13714bbf5ea8SMatthew G. Knepley       PetscInt        nodesPerCell   = patch->nodesPerCell[k];
13724bbf5ea8SMatthew G. Knepley       PetscInt        subspaceOffset = patch->subspaceOffsets[k];
13734bbf5ea8SMatthew G. Knepley       PetscInt        bs             = patch->bs[k];
13744bbf5ea8SMatthew G. Knepley 
13754bbf5ea8SMatthew G. Knepley       for (i = off; i < off + dof; ++i) {
13764bbf5ea8SMatthew G. Knepley         /* Walk over the cells in this patch. */
13774bbf5ea8SMatthew G. Knepley         const PetscInt c    = cellsArray[i];
13785f824522SMatthew G. Knepley         PetscInt       cell = c;
13794bbf5ea8SMatthew G. Knepley 
13805f824522SMatthew G. Knepley         /* TODO Change this to an IS */
13815f824522SMatthew G. Knepley         if (cellNumbering) {
13829566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetDof(cellNumbering, c, &cell));
138363a3b9bcSJacob Faibussowitsch           PetscCheck(cell > 0, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_OUTOFRANGE, "Cell %" PetscInt_FMT " doesn't appear in cell numbering map", c);
13849566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetOffset(cellNumbering, c, &cell));
13855f824522SMatthew G. Knepley         }
13864bbf5ea8SMatthew G. Knepley         newCellsArray[i] = cell;
13874bbf5ea8SMatthew G. Knepley         for (j = 0; j < nodesPerCell; ++j) {
13884bbf5ea8SMatthew G. Knepley           /* For each global dof, map it into contiguous local storage. */
13894bbf5ea8SMatthew G. Knepley           const PetscInt globalDof = cellNodeMap[cell * nodesPerCell + j] * bs + subspaceOffset;
13904bbf5ea8SMatthew G. Knepley           /* finally, loop over block size */
13914bbf5ea8SMatthew G. Knepley           for (l = 0; l < bs; ++l) {
13921b68eb51SMatthew G. Knepley             PetscInt  localDof;
13931b68eb51SMatthew G. Knepley             PetscBool isGlobalBcDof, isArtificialBcDof;
13944bbf5ea8SMatthew G. Knepley 
1395557beb66SLawrence Mitchell             /* first, check if this is either a globally enforced or locally enforced BC dof */
13969566063dSJacob Faibussowitsch             PetscCall(PetscHSetIHas(globalBcs, globalDof + l, &isGlobalBcDof));
13979566063dSJacob Faibussowitsch             PetscCall(PetscHSetIHas(artificialbcs, globalDof + l, &isArtificialBcDof));
1398557beb66SLawrence Mitchell 
1399557beb66SLawrence Mitchell             /* if it's either, don't ever give it a local dof number */
14001b68eb51SMatthew G. Knepley             if (isGlobalBcDof || isArtificialBcDof) {
1401c2e6f3c0SFlorian Wechsung               dofsArray[globalIndex] = -1; /* don't use this in assembly in this patch */
1402557beb66SLawrence Mitchell             } else {
14039566063dSJacob Faibussowitsch               PetscCall(PetscHMapIGet(ht, globalDof + l, &localDof));
14044bbf5ea8SMatthew G. Knepley               if (localDof == -1) {
14054bbf5ea8SMatthew G. Knepley                 localDof = localIndex++;
14069566063dSJacob Faibussowitsch                 PetscCall(PetscHMapISet(ht, globalDof + l, localDof));
14074bbf5ea8SMatthew G. Knepley               }
140863a3b9bcSJacob Faibussowitsch               PetscCheck(globalIndex < numDofs, PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "Found more dofs %" PetscInt_FMT " than expected %" PetscInt_FMT, globalIndex + 1, numDofs);
14094bbf5ea8SMatthew G. Knepley               /* And store. */
1410c2e6f3c0SFlorian Wechsung               dofsArray[globalIndex] = localDof;
14114bbf5ea8SMatthew G. Knepley             }
1412c2e6f3c0SFlorian Wechsung 
14130904074fSPatrick Farrell             if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) {
1414c2e6f3c0SFlorian Wechsung               if (isGlobalBcDof) {
1415e047a90bSFlorian Wechsung                 dofsArrayWithArtificial[globalIndex] = -1; /* don't use this in assembly in this patch */
1416c2e6f3c0SFlorian Wechsung               } else {
14179566063dSJacob Faibussowitsch                 PetscCall(PetscHMapIGet(htWithArtificial, globalDof + l, &localDof));
1418c2e6f3c0SFlorian Wechsung                 if (localDof == -1) {
1419c2e6f3c0SFlorian Wechsung                   localDof = localIndexWithArtificial++;
14209566063dSJacob Faibussowitsch                   PetscCall(PetscHMapISet(htWithArtificial, globalDof + l, localDof));
1421c2e6f3c0SFlorian Wechsung                 }
142263a3b9bcSJacob Faibussowitsch                 PetscCheck(globalIndex < numDofs, PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "Found more dofs %" PetscInt_FMT " than expected %" PetscInt_FMT, globalIndex + 1, numDofs);
1423c2e6f3c0SFlorian Wechsung                 /* And store.*/
1424c2e6f3c0SFlorian Wechsung                 dofsArrayWithArtificial[globalIndex] = localDof;
1425c2e6f3c0SFlorian Wechsung               }
1426c2e6f3c0SFlorian Wechsung             }
14270904074fSPatrick Farrell 
14280904074fSPatrick Farrell             if (isNonlinear) {
14290904074fSPatrick Farrell               /* Build the dofmap for the function space with _all_ dofs,
14300904074fSPatrick Farrell    including those in any kind of boundary condition */
14319566063dSJacob Faibussowitsch               PetscCall(PetscHMapIGet(htWithAll, globalDof + l, &localDof));
14320904074fSPatrick Farrell               if (localDof == -1) {
14330904074fSPatrick Farrell                 localDof = localIndexWithAll++;
14349566063dSJacob Faibussowitsch                 PetscCall(PetscHMapISet(htWithAll, globalDof + l, localDof));
14350904074fSPatrick Farrell               }
143663a3b9bcSJacob Faibussowitsch               PetscCheck(globalIndex < numDofs, PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "Found more dofs %" PetscInt_FMT " than expected %" PetscInt_FMT, globalIndex + 1, numDofs);
14370904074fSPatrick Farrell               /* And store.*/
14380904074fSPatrick Farrell               dofsArrayWithAll[globalIndex] = localDof;
14390904074fSPatrick Farrell             }
1440c2e6f3c0SFlorian Wechsung             globalIndex++;
14414bbf5ea8SMatthew G. Knepley           }
14424bbf5ea8SMatthew G. Knepley         }
14434bbf5ea8SMatthew G. Knepley       }
1444557beb66SLawrence Mitchell     }
14454bbf5ea8SMatthew G. Knepley     /* How many local dofs in this patch? */
14460904074fSPatrick Farrell     if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) {
14479566063dSJacob Faibussowitsch       PetscCall(PetscHMapIGetSize(htWithArtificial, &dof));
14489566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(gtolCountsWithArtificial, v, dof));
1449c2e6f3c0SFlorian Wechsung     }
14500904074fSPatrick Farrell     if (isNonlinear) {
14519566063dSJacob Faibussowitsch       PetscCall(PetscHMapIGetSize(htWithAll, &dof));
14529566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(gtolCountsWithAll, v, dof));
14530904074fSPatrick Farrell     }
14549566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(ht, &dof));
14559566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetDof(gtolCounts, v, dof));
14564bbf5ea8SMatthew G. Knepley   }
1457b6bb21d1SLawrence Mitchell 
14589566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm));
145963a3b9bcSJacob Faibussowitsch   PetscCheck(globalIndex == numDofs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Expected number of dofs (%" PetscInt_FMT ") doesn't match found number (%" PetscInt_FMT ")", numDofs, globalIndex);
14609566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(gtolCounts));
14619566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetStorageSize(gtolCounts, &numGlobalDofs));
14629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numGlobalDofs, &globalDofsArray));
14634bbf5ea8SMatthew G. Knepley 
14640904074fSPatrick Farrell   if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) {
14659566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(gtolCountsWithArtificial));
14669566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(gtolCountsWithArtificial, &numGlobalDofsWithArtificial));
14679566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numGlobalDofsWithArtificial, &globalDofsArrayWithArtificial));
1468c2e6f3c0SFlorian Wechsung   }
14690904074fSPatrick Farrell   if (isNonlinear) {
14709566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetUp(gtolCountsWithAll));
14719566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetStorageSize(gtolCountsWithAll, &numGlobalDofsWithAll));
14729566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numGlobalDofsWithAll, &globalDofsArrayWithAll));
14730904074fSPatrick Farrell   }
14744bbf5ea8SMatthew G. Knepley   /* Now populate the global to local map.  This could be merged into the above loop if we were willing to deal with reallocs. */
14754bbf5ea8SMatthew G. Knepley   for (v = vStart; v < vEnd; ++v) {
14761b68eb51SMatthew G. Knepley     PetscHashIter hi;
14775f824522SMatthew G. Knepley     PetscInt      dof, off, Np, ooff, i, j, k, l;
14784bbf5ea8SMatthew G. Knepley 
14799566063dSJacob Faibussowitsch     PetscCall(PetscHMapIClear(ht));
14809566063dSJacob Faibussowitsch     PetscCall(PetscHMapIClear(htWithArtificial));
14819566063dSJacob Faibussowitsch     PetscCall(PetscHMapIClear(htWithAll));
14829566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(cellCounts, v, &dof));
14839566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(cellCounts, v, &off));
14849566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(pointCounts, v, &Np));
14859566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(pointCounts, v, &ooff));
14864bbf5ea8SMatthew G. Knepley     if (dof <= 0) continue;
14874bbf5ea8SMatthew G. Knepley 
14884bbf5ea8SMatthew G. Knepley     for (k = 0; k < patch->nsubspaces; ++k) {
14894bbf5ea8SMatthew G. Knepley       const PetscInt *cellNodeMap    = patch->cellNodeMap[k];
14904bbf5ea8SMatthew G. Knepley       PetscInt        nodesPerCell   = patch->nodesPerCell[k];
14914bbf5ea8SMatthew G. Knepley       PetscInt        subspaceOffset = patch->subspaceOffsets[k];
14924bbf5ea8SMatthew G. Knepley       PetscInt        bs             = patch->bs[k];
1493d490bb3dSLawrence Mitchell       PetscInt        goff;
14944bbf5ea8SMatthew G. Knepley 
14954bbf5ea8SMatthew G. Knepley       for (i = off; i < off + dof; ++i) {
14964bbf5ea8SMatthew G. Knepley         /* Reconstruct mapping of global-to-local on this patch. */
14974bbf5ea8SMatthew G. Knepley         const PetscInt c    = cellsArray[i];
14985f824522SMatthew G. Knepley         PetscInt       cell = c;
14994bbf5ea8SMatthew G. Knepley 
15009566063dSJacob Faibussowitsch         if (cellNumbering) PetscCall(PetscSectionGetOffset(cellNumbering, c, &cell));
15014bbf5ea8SMatthew G. Knepley         for (j = 0; j < nodesPerCell; ++j) {
15024bbf5ea8SMatthew G. Knepley           for (l = 0; l < bs; ++l) {
15035f824522SMatthew G. Knepley             const PetscInt globalDof = cellNodeMap[cell * nodesPerCell + j] * bs + l + subspaceOffset;
1504c2e6f3c0SFlorian Wechsung             const PetscInt localDof  = dofsArray[key];
15059566063dSJacob Faibussowitsch             if (localDof >= 0) PetscCall(PetscHMapISet(ht, globalDof, localDof));
15060904074fSPatrick Farrell             if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) {
1507c2e6f3c0SFlorian Wechsung               const PetscInt localDofWithArtificial = dofsArrayWithArtificial[key];
150848a46eb9SPierre Jolivet               if (localDofWithArtificial >= 0) PetscCall(PetscHMapISet(htWithArtificial, globalDof, localDofWithArtificial));
1509c2e6f3c0SFlorian Wechsung             }
15100904074fSPatrick Farrell             if (isNonlinear) {
15110904074fSPatrick Farrell               const PetscInt localDofWithAll = dofsArrayWithAll[key];
151248a46eb9SPierre Jolivet               if (localDofWithAll >= 0) PetscCall(PetscHMapISet(htWithAll, globalDof, localDofWithAll));
15130904074fSPatrick Farrell             }
1514c2e6f3c0SFlorian Wechsung             key++;
15154bbf5ea8SMatthew G. Knepley           }
15164bbf5ea8SMatthew G. Knepley         }
15174bbf5ea8SMatthew G. Knepley       }
1518557beb66SLawrence Mitchell 
15194bbf5ea8SMatthew G. Knepley       /* Shove it in the output data structure. */
15209566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(gtolCounts, v, &goff));
15211b68eb51SMatthew G. Knepley       PetscHashIterBegin(ht, hi);
15221b68eb51SMatthew G. Knepley       while (!PetscHashIterAtEnd(ht, hi)) {
15234bbf5ea8SMatthew G. Knepley         PetscInt globalDof, localDof;
15244bbf5ea8SMatthew G. Knepley 
15251b68eb51SMatthew G. Knepley         PetscHashIterGetKey(ht, hi, globalDof);
15261b68eb51SMatthew G. Knepley         PetscHashIterGetVal(ht, hi, localDof);
15274bbf5ea8SMatthew G. Knepley         if (globalDof >= 0) globalDofsArray[goff + localDof] = globalDof;
15281b68eb51SMatthew G. Knepley         PetscHashIterNext(ht, hi);
15294bbf5ea8SMatthew G. Knepley       }
15305f824522SMatthew G. Knepley 
15310904074fSPatrick Farrell       if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) {
15329566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(gtolCountsWithArtificial, v, &goff));
1533c2e6f3c0SFlorian Wechsung         PetscHashIterBegin(htWithArtificial, hi);
1534c2e6f3c0SFlorian Wechsung         while (!PetscHashIterAtEnd(htWithArtificial, hi)) {
1535c2e6f3c0SFlorian Wechsung           PetscInt globalDof, localDof;
1536c2e6f3c0SFlorian Wechsung           PetscHashIterGetKey(htWithArtificial, hi, globalDof);
1537c2e6f3c0SFlorian Wechsung           PetscHashIterGetVal(htWithArtificial, hi, localDof);
1538c2e6f3c0SFlorian Wechsung           if (globalDof >= 0) globalDofsArrayWithArtificial[goff + localDof] = globalDof;
1539c2e6f3c0SFlorian Wechsung           PetscHashIterNext(htWithArtificial, hi);
1540c2e6f3c0SFlorian Wechsung         }
1541c2e6f3c0SFlorian Wechsung       }
15420904074fSPatrick Farrell       if (isNonlinear) {
15439566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(gtolCountsWithAll, v, &goff));
15440904074fSPatrick Farrell         PetscHashIterBegin(htWithAll, hi);
15450904074fSPatrick Farrell         while (!PetscHashIterAtEnd(htWithAll, hi)) {
15460904074fSPatrick Farrell           PetscInt globalDof, localDof;
15470904074fSPatrick Farrell           PetscHashIterGetKey(htWithAll, hi, globalDof);
15480904074fSPatrick Farrell           PetscHashIterGetVal(htWithAll, hi, localDof);
15490904074fSPatrick Farrell           if (globalDof >= 0) globalDofsArrayWithAll[goff + localDof] = globalDof;
15500904074fSPatrick Farrell           PetscHashIterNext(htWithAll, hi);
15510904074fSPatrick Farrell         }
15520904074fSPatrick Farrell       }
1553c2e6f3c0SFlorian Wechsung 
15545f824522SMatthew G. Knepley       for (p = 0; p < Np; ++p) {
15555f824522SMatthew G. Knepley         const PetscInt point = pointsArray[ooff + p];
15565f824522SMatthew G. Knepley         PetscInt       globalDof, localDof;
15575f824522SMatthew G. Knepley 
15589566063dSJacob Faibussowitsch         PetscCall(PCPatchGetGlobalDofs(pc, patch->dofSection, k, patch->combined, point, NULL, &globalDof));
15599566063dSJacob Faibussowitsch         PetscCall(PetscHMapIGet(ht, globalDof, &localDof));
15605f824522SMatthew G. Knepley         offsArray[(ooff + p) * Nf + k] = localDof;
15610904074fSPatrick Farrell         if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) {
15629566063dSJacob Faibussowitsch           PetscCall(PetscHMapIGet(htWithArtificial, globalDof, &localDof));
1563c2e6f3c0SFlorian Wechsung           offsArrayWithArtificial[(ooff + p) * Nf + k] = localDof;
1564c2e6f3c0SFlorian Wechsung         }
15650904074fSPatrick Farrell         if (isNonlinear) {
15669566063dSJacob Faibussowitsch           PetscCall(PetscHMapIGet(htWithAll, globalDof, &localDof));
15670904074fSPatrick Farrell           offsArrayWithAll[(ooff + p) * Nf + k] = localDof;
15680904074fSPatrick Farrell         }
15695f824522SMatthew G. Knepley       }
15704bbf5ea8SMatthew G. Knepley     }
15714bbf5ea8SMatthew G. Knepley 
15729566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&globalBcs));
15739566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ownedpts));
15749566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&seenpts));
15759566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&owneddofs));
15769566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&seendofs));
15779566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&artificialbcs));
1578557beb66SLawrence Mitchell 
15794bbf5ea8SMatthew G. Knepley     /* At this point, we have a hash table ht built that maps globalDof -> localDof.
15804bbf5ea8SMatthew G. Knepley    We need to create the dof table laid out cellwise first, then by subspace,
15814bbf5ea8SMatthew G. Knepley    as the assembler assembles cell-wise and we need to stuff the different
15824bbf5ea8SMatthew G. Knepley    contributions of the different function spaces to the right places. So we loop
15834bbf5ea8SMatthew G. Knepley    over cells, then over subspaces. */
15844bbf5ea8SMatthew G. Knepley     if (patch->nsubspaces > 1) { /* for nsubspaces = 1, data we need is already in dofsArray */
15854bbf5ea8SMatthew G. Knepley       for (i = off; i < off + dof; ++i) {
15864bbf5ea8SMatthew G. Knepley         const PetscInt c    = cellsArray[i];
15875f824522SMatthew G. Knepley         PetscInt       cell = c;
15884bbf5ea8SMatthew G. Knepley 
15899566063dSJacob Faibussowitsch         if (cellNumbering) PetscCall(PetscSectionGetOffset(cellNumbering, c, &cell));
15904bbf5ea8SMatthew G. Knepley         for (k = 0; k < patch->nsubspaces; ++k) {
15914bbf5ea8SMatthew G. Knepley           const PetscInt *cellNodeMap    = patch->cellNodeMap[k];
15924bbf5ea8SMatthew G. Knepley           PetscInt        nodesPerCell   = patch->nodesPerCell[k];
15934bbf5ea8SMatthew G. Knepley           PetscInt        subspaceOffset = patch->subspaceOffsets[k];
15944bbf5ea8SMatthew G. Knepley           PetscInt        bs             = patch->bs[k];
15954bbf5ea8SMatthew G. Knepley 
15964bbf5ea8SMatthew G. Knepley           for (j = 0; j < nodesPerCell; ++j) {
15974bbf5ea8SMatthew G. Knepley             for (l = 0; l < bs; ++l) {
15985f824522SMatthew G. Knepley               const PetscInt globalDof = cellNodeMap[cell * nodesPerCell + j] * bs + l + subspaceOffset;
15994bbf5ea8SMatthew G. Knepley               PetscInt       localDof;
16004bbf5ea8SMatthew G. Knepley 
16019566063dSJacob Faibussowitsch               PetscCall(PetscHMapIGet(ht, globalDof, &localDof));
1602557beb66SLawrence Mitchell               /* If it's not in the hash table, i.e. is a BC dof,
16031b68eb51SMatthew G. Knepley    then the PetscHSetIMap above gives -1, which matches
1604557beb66SLawrence Mitchell    exactly the convention for PETSc's matrix assembly to
1605557beb66SLawrence Mitchell    ignore the dof. So we don't need to do anything here */
1606c2e6f3c0SFlorian Wechsung               asmArray[asmKey] = localDof;
16070904074fSPatrick Farrell               if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) {
16089566063dSJacob Faibussowitsch                 PetscCall(PetscHMapIGet(htWithArtificial, globalDof, &localDof));
1609c2e6f3c0SFlorian Wechsung                 asmArrayWithArtificial[asmKey] = localDof;
1610c2e6f3c0SFlorian Wechsung               }
16110904074fSPatrick Farrell               if (isNonlinear) {
16129566063dSJacob Faibussowitsch                 PetscCall(PetscHMapIGet(htWithAll, globalDof, &localDof));
16130904074fSPatrick Farrell                 asmArrayWithAll[asmKey] = localDof;
16140904074fSPatrick Farrell               }
1615c2e6f3c0SFlorian Wechsung               asmKey++;
16164bbf5ea8SMatthew G. Knepley             }
16174bbf5ea8SMatthew G. Knepley           }
16184bbf5ea8SMatthew G. Knepley         }
16194bbf5ea8SMatthew G. Knepley       }
16204bbf5ea8SMatthew G. Knepley     }
16214bbf5ea8SMatthew G. Knepley   }
1622c2e6f3c0SFlorian Wechsung   if (1 == patch->nsubspaces) {
16239566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(asmArray, dofsArray, numDofs));
162448a46eb9SPierre Jolivet     if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) PetscCall(PetscArraycpy(asmArrayWithArtificial, dofsArrayWithArtificial, numDofs));
16251baa6e33SBarry Smith     if (isNonlinear) PetscCall(PetscArraycpy(asmArrayWithAll, dofsArrayWithAll, numDofs));
1626c2e6f3c0SFlorian Wechsung   }
16274bbf5ea8SMatthew G. Knepley 
16289566063dSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ht));
16299566063dSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&htWithArtificial));
16309566063dSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&htWithAll));
16319566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(cells, &cellsArray));
16329566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(points, &pointsArray));
16339566063dSJacob Faibussowitsch   PetscCall(PetscFree(dofsArray));
163448a46eb9SPierre Jolivet   if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) PetscCall(PetscFree(dofsArrayWithArtificial));
16351baa6e33SBarry Smith   if (isNonlinear) PetscCall(PetscFree(dofsArrayWithAll));
16365f824522SMatthew G. Knepley   /* Create placeholder section for map from points to patch dofs */
16379566063dSJacob Faibussowitsch   PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->patchSection));
16389566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetNumFields(patch->patchSection, patch->nsubspaces));
16391e5fa6bbSLawrence Mitchell   if (patch->combined) {
16401e5fa6bbSLawrence Mitchell     PetscInt numFields;
16419566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetNumFields(patch->dofSection[0], &numFields));
164263a3b9bcSJacob Faibussowitsch     PetscCheck(numFields == patch->nsubspaces, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONG, "Mismatch between number of section fields %" PetscInt_FMT " and number of subspaces %" PetscInt_FMT, numFields, patch->nsubspaces);
16439566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(patch->dofSection[0], &pStart, &pEnd));
16449566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(patch->patchSection, pStart, pEnd));
16455f824522SMatthew G. Knepley     for (p = pStart; p < pEnd; ++p) {
16465f824522SMatthew G. Knepley       PetscInt dof, fdof, f;
16475f824522SMatthew G. Knepley 
16489566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(patch->dofSection[0], p, &dof));
16499566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetDof(patch->patchSection, p, dof));
16505f824522SMatthew G. Knepley       for (f = 0; f < patch->nsubspaces; ++f) {
16519566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetFieldDof(patch->dofSection[0], p, f, &fdof));
16529566063dSJacob Faibussowitsch         PetscCall(PetscSectionSetFieldDof(patch->patchSection, p, f, fdof));
16535f824522SMatthew G. Knepley       }
16541e5fa6bbSLawrence Mitchell     }
16551e5fa6bbSLawrence Mitchell   } else {
16561e5fa6bbSLawrence Mitchell     PetscInt pStartf, pEndf, f;
1657*1690c2aeSBarry Smith     pStart = PETSC_INT_MAX;
1658*1690c2aeSBarry Smith     pEnd   = PETSC_INT_MIN;
16591e5fa6bbSLawrence Mitchell     for (f = 0; f < patch->nsubspaces; ++f) {
16609566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(patch->dofSection[f], &pStartf, &pEndf));
16611e5fa6bbSLawrence Mitchell       pStart = PetscMin(pStart, pStartf);
16621e5fa6bbSLawrence Mitchell       pEnd   = PetscMax(pEnd, pEndf);
16631e5fa6bbSLawrence Mitchell     }
16649566063dSJacob Faibussowitsch     PetscCall(PetscSectionSetChart(patch->patchSection, pStart, pEnd));
16651e5fa6bbSLawrence Mitchell     for (f = 0; f < patch->nsubspaces; ++f) {
16669566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(patch->dofSection[f], &pStartf, &pEndf));
16671e5fa6bbSLawrence Mitchell       for (p = pStartf; p < pEndf; ++p) {
16681e5fa6bbSLawrence Mitchell         PetscInt fdof;
16699566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(patch->dofSection[f], p, &fdof));
16709566063dSJacob Faibussowitsch         PetscCall(PetscSectionAddDof(patch->patchSection, p, fdof));
16719566063dSJacob Faibussowitsch         PetscCall(PetscSectionSetFieldDof(patch->patchSection, p, f, fdof));
1672bdd9e0cdSPatrick Farrell       }
1673bdd9e0cdSPatrick Farrell     }
16745f824522SMatthew G. Knepley   }
16759566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUp(patch->patchSection));
16769566063dSJacob Faibussowitsch   PetscCall(PetscSectionSetUseFieldOffsets(patch->patchSection, PETSC_TRUE));
16774bbf5ea8SMatthew G. Knepley   /* Replace cell indices with firedrake-numbered ones. */
16789566063dSJacob Faibussowitsch   PetscCall(ISGeneralSetIndices(cells, numCells, (const PetscInt *)newCellsArray, PETSC_OWN_POINTER));
16799566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGlobalDofs, globalDofsArray, PETSC_OWN_POINTER, &patch->gtol));
16809566063dSJacob Faibussowitsch   PetscCall(PetscObjectSetName((PetscObject)patch->gtol, "Global Indices"));
16819566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_g2l_view", patch->classname));
16829566063dSJacob Faibussowitsch   PetscCall(PetscSectionViewFromOptions(patch->gtolCounts, (PetscObject)pc, option));
16839566063dSJacob Faibussowitsch   PetscCall(ISViewFromOptions(patch->gtol, (PetscObject)pc, option));
16849566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numDofs, asmArray, PETSC_OWN_POINTER, &patch->dofs));
16859566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numPoints * Nf, offsArray, PETSC_OWN_POINTER, &patch->offs));
16860904074fSPatrick Farrell   if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) {
16879566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGlobalDofsWithArtificial, globalDofsArrayWithArtificial, PETSC_OWN_POINTER, &patch->gtolWithArtificial));
16889566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numDofs, asmArrayWithArtificial, PETSC_OWN_POINTER, &patch->dofsWithArtificial));
16899566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numPoints * Nf, offsArrayWithArtificial, PETSC_OWN_POINTER, &patch->offsWithArtificial));
1690c2e6f3c0SFlorian Wechsung   }
16910904074fSPatrick Farrell   if (isNonlinear) {
16929566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGlobalDofsWithAll, globalDofsArrayWithAll, PETSC_OWN_POINTER, &patch->gtolWithAll));
16939566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numDofs, asmArrayWithAll, PETSC_OWN_POINTER, &patch->dofsWithAll));
16949566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numPoints * Nf, offsArrayWithAll, PETSC_OWN_POINTER, &patch->offsWithAll));
16950904074fSPatrick Farrell   }
16963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16974bbf5ea8SMatthew G. Knepley }
16984bbf5ea8SMatthew G. Knepley 
1699d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchCreateMatrix_Private(PC pc, PetscInt point, Mat *mat, PetscBool withArtificial)
1700d71ae5a4SJacob Faibussowitsch {
17014bbf5ea8SMatthew G. Knepley   PC_PATCH   *patch = (PC_PATCH *)pc->data;
17024bbf5ea8SMatthew G. Knepley   PetscBool   flg;
17034bbf5ea8SMatthew G. Knepley   PetscInt    csize, rsize;
17044bbf5ea8SMatthew G. Knepley   const char *prefix = NULL;
17054bbf5ea8SMatthew G. Knepley 
17064bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
1707c2e6f3c0SFlorian Wechsung   if (withArtificial) {
1708e047a90bSFlorian Wechsung     /* would be nice if we could create a rectangular matrix of size numDofsWithArtificial x numDofs here */
17099d4fc724SLawrence Mitchell     PetscInt pStart;
17109566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(patch->gtolCountsWithArtificial, &pStart, NULL));
17119566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(patch->gtolCountsWithArtificial, point + pStart, &rsize));
17129d4fc724SLawrence Mitchell     csize = rsize;
1713ff201f6aSFlorian Wechsung   } else {
17149d4fc724SLawrence Mitchell     PetscInt pStart;
17159566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(patch->gtolCounts, &pStart, NULL));
17169566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(patch->gtolCounts, point + pStart, &rsize));
17179d4fc724SLawrence Mitchell     csize = rsize;
1718c2e6f3c0SFlorian Wechsung   }
1719c2e6f3c0SFlorian Wechsung 
17209566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, mat));
17219566063dSJacob Faibussowitsch   PetscCall(PCGetOptionsPrefix(pc, &prefix));
17229566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(*mat, prefix));
17239566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(*mat, "pc_patch_sub_"));
17249566063dSJacob Faibussowitsch   if (patch->sub_mat_type) PetscCall(MatSetType(*mat, patch->sub_mat_type));
17259566063dSJacob Faibussowitsch   else if (!patch->sub_mat_type) PetscCall(MatSetType(*mat, MATDENSE));
17269566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, rsize, csize, rsize, csize));
17279566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)*mat, MATDENSE, &flg));
17289566063dSJacob Faibussowitsch   if (!flg) PetscCall(PetscObjectTypeCompare((PetscObject)*mat, MATSEQDENSE, &flg));
17294bbf5ea8SMatthew G. Knepley   /* Sparse patch matrices */
17304bbf5ea8SMatthew G. Knepley   if (!flg) {
17314bbf5ea8SMatthew G. Knepley     PetscBT         bt;
17324bbf5ea8SMatthew G. Knepley     PetscInt       *dnnz      = NULL;
17334bbf5ea8SMatthew G. Knepley     const PetscInt *dofsArray = NULL;
17344bbf5ea8SMatthew G. Knepley     PetscInt        pStart, pEnd, ncell, offset, c, i, j;
17354bbf5ea8SMatthew G. Knepley 
1736c2e6f3c0SFlorian Wechsung     if (withArtificial) {
17379566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(patch->dofsWithArtificial, &dofsArray));
1738ff201f6aSFlorian Wechsung     } else {
17399566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(patch->dofs, &dofsArray));
1740c2e6f3c0SFlorian Wechsung     }
17419566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(patch->cellCounts, &pStart, &pEnd));
17424bbf5ea8SMatthew G. Knepley     point += pStart;
174363a3b9bcSJacob Faibussowitsch     PetscCheck(point < pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Operator point %" PetscInt_FMT " not in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, pStart, pEnd);
17449566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(patch->cellCounts, point, &ncell));
17459566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(patch->cellCounts, point, &offset));
17469566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(PC_Patch_Prealloc, pc, 0, 0, 0));
1747b2866507SPatrick Farrell     /* A PetscBT uses N^2 bits to store the sparsity pattern on a
17484bbf5ea8SMatthew G. Knepley    * patch. This is probably OK if the patches are not too big,
1749b2866507SPatrick Farrell    * but uses too much memory. We therefore switch based on rsize. */
1750b2866507SPatrick Farrell     if (rsize < 3000) { /* FIXME: I picked this switch value out of my hat */
1751d63cebbaSPatrick Farrell       PetscScalar *zeroes;
1752d63cebbaSPatrick Farrell       PetscInt     rows;
1753d63cebbaSPatrick Farrell 
17549566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(rsize, &dnnz));
17559566063dSJacob Faibussowitsch       PetscCall(PetscBTCreate(rsize * rsize, &bt));
17564bbf5ea8SMatthew G. Knepley       for (c = 0; c < ncell; ++c) {
17574bbf5ea8SMatthew G. Knepley         const PetscInt *idx = dofsArray + (offset + c) * patch->totalDofsPerCell;
17584bbf5ea8SMatthew G. Knepley         for (i = 0; i < patch->totalDofsPerCell; ++i) {
17594bbf5ea8SMatthew G. Knepley           const PetscInt row = idx[i];
1760557beb66SLawrence Mitchell           if (row < 0) continue;
17614bbf5ea8SMatthew G. Knepley           for (j = 0; j < patch->totalDofsPerCell; ++j) {
17624bbf5ea8SMatthew G. Knepley             const PetscInt col = idx[j];
17634bbf5ea8SMatthew G. Knepley             const PetscInt key = row * rsize + col;
1764557beb66SLawrence Mitchell             if (col < 0) continue;
17654bbf5ea8SMatthew G. Knepley             if (!PetscBTLookupSet(bt, key)) ++dnnz[row];
17664bbf5ea8SMatthew G. Knepley           }
17674bbf5ea8SMatthew G. Knepley         }
17684bbf5ea8SMatthew G. Knepley       }
1769d63cebbaSPatrick Farrell 
1770d63cebbaSPatrick Farrell       if (patch->usercomputeopintfacet) {
1771d63cebbaSPatrick Farrell         const PetscInt *intFacetsArray = NULL;
1772d63cebbaSPatrick Farrell         PetscInt        i, numIntFacets, intFacetOffset;
1773d63cebbaSPatrick Farrell         const PetscInt *facetCells = NULL;
1774d63cebbaSPatrick Farrell 
17759566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(patch->intFacetCounts, point, &numIntFacets));
17769566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(patch->intFacetCounts, point, &intFacetOffset));
17779566063dSJacob Faibussowitsch         PetscCall(ISGetIndices(patch->intFacetsToPatchCell, &facetCells));
17789566063dSJacob Faibussowitsch         PetscCall(ISGetIndices(patch->intFacets, &intFacetsArray));
1779d63cebbaSPatrick Farrell         for (i = 0; i < numIntFacets; i++) {
1780d63cebbaSPatrick Farrell           const PetscInt cell0 = facetCells[2 * (intFacetOffset + i) + 0];
1781d63cebbaSPatrick Farrell           const PetscInt cell1 = facetCells[2 * (intFacetOffset + i) + 1];
1782d63cebbaSPatrick Farrell           PetscInt       celli, cellj;
1783d63cebbaSPatrick Farrell 
1784d63cebbaSPatrick Farrell           for (celli = 0; celli < patch->totalDofsPerCell; celli++) {
1785d63cebbaSPatrick Farrell             const PetscInt row = dofsArray[(offset + cell0) * patch->totalDofsPerCell + celli];
1786b5c64f08SPatrick Farrell             if (row < 0) continue;
1787d63cebbaSPatrick Farrell             for (cellj = 0; cellj < patch->totalDofsPerCell; cellj++) {
1788d63cebbaSPatrick Farrell               const PetscInt col = dofsArray[(offset + cell1) * patch->totalDofsPerCell + cellj];
1789d63cebbaSPatrick Farrell               const PetscInt key = row * rsize + col;
1790d63cebbaSPatrick Farrell               if (col < 0) continue;
1791d63cebbaSPatrick Farrell               if (!PetscBTLookupSet(bt, key)) ++dnnz[row];
1792d63cebbaSPatrick Farrell             }
1793d63cebbaSPatrick Farrell           }
1794d63cebbaSPatrick Farrell 
1795d63cebbaSPatrick Farrell           for (celli = 0; celli < patch->totalDofsPerCell; celli++) {
1796d63cebbaSPatrick Farrell             const PetscInt row = dofsArray[(offset + cell1) * patch->totalDofsPerCell + celli];
1797b5c64f08SPatrick Farrell             if (row < 0) continue;
1798d63cebbaSPatrick Farrell             for (cellj = 0; cellj < patch->totalDofsPerCell; cellj++) {
1799d63cebbaSPatrick Farrell               const PetscInt col = dofsArray[(offset + cell0) * patch->totalDofsPerCell + cellj];
1800d63cebbaSPatrick Farrell               const PetscInt key = row * rsize + col;
1801d63cebbaSPatrick Farrell               if (col < 0) continue;
1802d63cebbaSPatrick Farrell               if (!PetscBTLookupSet(bt, key)) ++dnnz[row];
1803d63cebbaSPatrick Farrell             }
1804d63cebbaSPatrick Farrell           }
1805d63cebbaSPatrick Farrell         }
1806d63cebbaSPatrick Farrell       }
18079566063dSJacob Faibussowitsch       PetscCall(PetscBTDestroy(&bt));
18089566063dSJacob Faibussowitsch       PetscCall(MatXAIJSetPreallocation(*mat, 1, dnnz, NULL, NULL, NULL));
18099566063dSJacob Faibussowitsch       PetscCall(PetscFree(dnnz));
1810d63cebbaSPatrick Farrell 
18119566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(patch->totalDofsPerCell * patch->totalDofsPerCell, &zeroes));
1812d63cebbaSPatrick Farrell       for (c = 0; c < ncell; ++c) {
1813d63cebbaSPatrick Farrell         const PetscInt *idx = &dofsArray[(offset + c) * patch->totalDofsPerCell];
18149566063dSJacob Faibussowitsch         PetscCall(MatSetValues(*mat, patch->totalDofsPerCell, idx, patch->totalDofsPerCell, idx, zeroes, INSERT_VALUES));
1815d63cebbaSPatrick Farrell       }
18169566063dSJacob Faibussowitsch       PetscCall(MatGetLocalSize(*mat, &rows, NULL));
181748a46eb9SPierre Jolivet       for (i = 0; i < rows; ++i) PetscCall(MatSetValues(*mat, 1, &i, 1, &i, zeroes, INSERT_VALUES));
1818d63cebbaSPatrick Farrell 
1819d63cebbaSPatrick Farrell       if (patch->usercomputeopintfacet) {
1820d63cebbaSPatrick Farrell         const PetscInt *intFacetsArray = NULL;
1821d63cebbaSPatrick Farrell         PetscInt        i, numIntFacets, intFacetOffset;
1822d63cebbaSPatrick Farrell         const PetscInt *facetCells = NULL;
1823d63cebbaSPatrick Farrell 
18249566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(patch->intFacetCounts, point, &numIntFacets));
18259566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(patch->intFacetCounts, point, &intFacetOffset));
18269566063dSJacob Faibussowitsch         PetscCall(ISGetIndices(patch->intFacetsToPatchCell, &facetCells));
18279566063dSJacob Faibussowitsch         PetscCall(ISGetIndices(patch->intFacets, &intFacetsArray));
1828d63cebbaSPatrick Farrell         for (i = 0; i < numIntFacets; i++) {
1829d63cebbaSPatrick Farrell           const PetscInt  cell0    = facetCells[2 * (intFacetOffset + i) + 0];
1830d63cebbaSPatrick Farrell           const PetscInt  cell1    = facetCells[2 * (intFacetOffset + i) + 1];
1831d63cebbaSPatrick Farrell           const PetscInt *cell0idx = &dofsArray[(offset + cell0) * patch->totalDofsPerCell];
1832d63cebbaSPatrick Farrell           const PetscInt *cell1idx = &dofsArray[(offset + cell1) * patch->totalDofsPerCell];
18339566063dSJacob Faibussowitsch           PetscCall(MatSetValues(*mat, patch->totalDofsPerCell, cell0idx, patch->totalDofsPerCell, cell1idx, zeroes, INSERT_VALUES));
18349566063dSJacob Faibussowitsch           PetscCall(MatSetValues(*mat, patch->totalDofsPerCell, cell1idx, patch->totalDofsPerCell, cell0idx, zeroes, INSERT_VALUES));
1835d63cebbaSPatrick Farrell         }
1836d63cebbaSPatrick Farrell       }
1837d63cebbaSPatrick Farrell 
18389566063dSJacob Faibussowitsch       PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
18399566063dSJacob Faibussowitsch       PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
1840d63cebbaSPatrick Farrell 
18419566063dSJacob Faibussowitsch       PetscCall(PetscFree(zeroes));
1842d63cebbaSPatrick Farrell 
1843b2866507SPatrick Farrell     } else { /* rsize too big, use MATPREALLOCATOR */
1844b2866507SPatrick Farrell       Mat          preallocator;
1845b2866507SPatrick Farrell       PetscScalar *vals;
1846b2866507SPatrick Farrell 
18479566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(patch->totalDofsPerCell * patch->totalDofsPerCell, &vals));
18489566063dSJacob Faibussowitsch       PetscCall(MatCreate(PETSC_COMM_SELF, &preallocator));
18499566063dSJacob Faibussowitsch       PetscCall(MatSetType(preallocator, MATPREALLOCATOR));
18509566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(preallocator, rsize, rsize, rsize, rsize));
18519566063dSJacob Faibussowitsch       PetscCall(MatSetUp(preallocator));
185211bcd083SPatrick Farrell 
1853b2866507SPatrick Farrell       for (c = 0; c < ncell; ++c) {
1854b2866507SPatrick Farrell         const PetscInt *idx = dofsArray + (offset + c) * patch->totalDofsPerCell;
18559566063dSJacob Faibussowitsch         PetscCall(MatSetValues(preallocator, patch->totalDofsPerCell, idx, patch->totalDofsPerCell, idx, vals, INSERT_VALUES));
1856b2866507SPatrick Farrell       }
185711bcd083SPatrick Farrell 
185811bcd083SPatrick Farrell       if (patch->usercomputeopintfacet) {
185911bcd083SPatrick Farrell         const PetscInt *intFacetsArray = NULL;
186011bcd083SPatrick Farrell         PetscInt        i, numIntFacets, intFacetOffset;
186111bcd083SPatrick Farrell         const PetscInt *facetCells = NULL;
186211bcd083SPatrick Farrell 
18639566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(patch->intFacetCounts, point, &numIntFacets));
18649566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(patch->intFacetCounts, point, &intFacetOffset));
18659566063dSJacob Faibussowitsch         PetscCall(ISGetIndices(patch->intFacetsToPatchCell, &facetCells));
18669566063dSJacob Faibussowitsch         PetscCall(ISGetIndices(patch->intFacets, &intFacetsArray));
186711bcd083SPatrick Farrell         for (i = 0; i < numIntFacets; i++) {
186811bcd083SPatrick Farrell           const PetscInt  cell0    = facetCells[2 * (intFacetOffset + i) + 0];
186911bcd083SPatrick Farrell           const PetscInt  cell1    = facetCells[2 * (intFacetOffset + i) + 1];
187011bcd083SPatrick Farrell           const PetscInt *cell0idx = &dofsArray[(offset + cell0) * patch->totalDofsPerCell];
187111bcd083SPatrick Farrell           const PetscInt *cell1idx = &dofsArray[(offset + cell1) * patch->totalDofsPerCell];
18729566063dSJacob Faibussowitsch           PetscCall(MatSetValues(preallocator, patch->totalDofsPerCell, cell0idx, patch->totalDofsPerCell, cell1idx, vals, INSERT_VALUES));
18739566063dSJacob Faibussowitsch           PetscCall(MatSetValues(preallocator, patch->totalDofsPerCell, cell1idx, patch->totalDofsPerCell, cell0idx, vals, INSERT_VALUES));
187411bcd083SPatrick Farrell         }
187511bcd083SPatrick Farrell       }
187611bcd083SPatrick Farrell 
18779566063dSJacob Faibussowitsch       PetscCall(PetscFree(vals));
18789566063dSJacob Faibussowitsch       PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY));
18799566063dSJacob Faibussowitsch       PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY));
18809566063dSJacob Faibussowitsch       PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, *mat));
18819566063dSJacob Faibussowitsch       PetscCall(MatDestroy(&preallocator));
1882b2866507SPatrick Farrell     }
18839566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(PC_Patch_Prealloc, pc, 0, 0, 0));
1884fe117d09SFlorian Wechsung     if (withArtificial) {
18859566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(patch->dofsWithArtificial, &dofsArray));
1886fe117d09SFlorian Wechsung     } else {
18879566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(patch->dofs, &dofsArray));
18884bbf5ea8SMatthew G. Knepley     }
1889fe117d09SFlorian Wechsung   }
18909566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
18913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18924bbf5ea8SMatthew G. Knepley }
18934bbf5ea8SMatthew G. Knepley 
1894d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchComputeFunction_DMPlex_Private(PC pc, PetscInt patchNum, Vec x, Vec F, IS cellIS, PetscInt n, const PetscInt *l2p, const PetscInt *l2pWithAll, void *ctx)
1895d71ae5a4SJacob Faibussowitsch {
189692d50984SMatthew G. Knepley   PC_PATCH       *patch = (PC_PATCH *)pc->data;
1897b6bb21d1SLawrence Mitchell   DM              dm, plex;
189892d50984SMatthew G. Knepley   PetscSection    s;
189992d50984SMatthew G. Knepley   const PetscInt *parray, *oarray;
190092d50984SMatthew G. Knepley   PetscInt        Nf = patch->nsubspaces, Np, poff, p, f;
190192d50984SMatthew G. Knepley 
190292d50984SMatthew G. Knepley   PetscFunctionBegin;
190328b400f6SJacob Faibussowitsch   PetscCheck(!patch->precomputeElementTensors, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONGSTATE, "Precomputing element tensors not implemented with DMPlex compute operator");
19049566063dSJacob Faibussowitsch   PetscCall(PCGetDM(pc, &dm));
19059566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
1906b6bb21d1SLawrence Mitchell   dm = plex;
19079566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
190892d50984SMatthew G. Knepley   /* Set offset into patch */
19099566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetDof(patch->pointCounts, patchNum, &Np));
19109566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetOffset(patch->pointCounts, patchNum, &poff));
19119566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(patch->points, &parray));
19129566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(patch->offs, &oarray));
191392d50984SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
191492d50984SMatthew G. Knepley     for (p = 0; p < Np; ++p) {
191592d50984SMatthew G. Knepley       const PetscInt point = parray[poff + p];
191692d50984SMatthew G. Knepley       PetscInt       dof;
191792d50984SMatthew G. Knepley 
19189566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(patch->patchSection, point, f, &dof));
19199566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldOffset(patch->patchSection, point, f, oarray[(poff + p) * Nf + f]));
19209566063dSJacob Faibussowitsch       if (patch->nsubspaces == 1) PetscCall(PetscSectionSetOffset(patch->patchSection, point, oarray[(poff + p) * Nf + f]));
19219566063dSJacob Faibussowitsch       else PetscCall(PetscSectionSetOffset(patch->patchSection, point, -1));
192292d50984SMatthew G. Knepley     }
192392d50984SMatthew G. Knepley   }
19249566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(patch->points, &parray));
19259566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(patch->offs, &oarray));
19269566063dSJacob Faibussowitsch   if (patch->viewSection) PetscCall(ObjectView((PetscObject)patch->patchSection, patch->viewerSection, patch->formatSection));
19279566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeResidual_Patch_Internal(dm, patch->patchSection, cellIS, 0.0, x, NULL, F, ctx));
19289566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm));
19293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
193092d50984SMatthew G. Knepley }
193192d50984SMatthew G. Knepley 
1932d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchComputeFunction_Internal(PC pc, Vec x, Vec F, PetscInt point)
1933d71ae5a4SJacob Faibussowitsch {
193492d50984SMatthew G. Knepley   PC_PATCH       *patch = (PC_PATCH *)pc->data;
193592d50984SMatthew G. Knepley   const PetscInt *dofsArray;
19360904074fSPatrick Farrell   const PetscInt *dofsArrayWithAll;
193792d50984SMatthew G. Knepley   const PetscInt *cellsArray;
193892d50984SMatthew G. Knepley   PetscInt        ncell, offset, pStart, pEnd;
193992d50984SMatthew G. Knepley 
194092d50984SMatthew G. Knepley   PetscFunctionBegin;
19419566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PC_Patch_ComputeOp, pc, 0, 0, 0));
1942ef1023bdSBarry Smith   PetscCheck(patch->usercomputeop, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PCPatchSetComputeOperator() to set callback");
19439566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(patch->dofs, &dofsArray));
19449566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(patch->dofsWithAll, &dofsArrayWithAll));
19459566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(patch->cells, &cellsArray));
19469566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(patch->cellCounts, &pStart, &pEnd));
194792d50984SMatthew G. Knepley 
194892d50984SMatthew G. Knepley   point += pStart;
194963a3b9bcSJacob Faibussowitsch   PetscCheck(point < pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Operator point %" PetscInt_FMT " not in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, pStart, pEnd);
195092d50984SMatthew G. Knepley 
19519566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetDof(patch->cellCounts, point, &ncell));
19529566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetOffset(patch->cellCounts, point, &offset));
195392d50984SMatthew G. Knepley   if (ncell <= 0) {
19549566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(PC_Patch_ComputeOp, pc, 0, 0, 0));
19553ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
195692d50984SMatthew G. Knepley   }
19579566063dSJacob Faibussowitsch   PetscCall(VecSet(F, 0.0));
195892d50984SMatthew G. Knepley   /* Cannot reuse the same IS because the geometry info is being cached in it */
19599566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncell, cellsArray + offset, PETSC_USE_POINTER, &patch->cellIS));
1960792fecdfSBarry Smith   PetscCallBack("PCPatch callback", patch->usercomputef(pc, point, x, F, patch->cellIS, ncell * patch->totalDofsPerCell, dofsArray + offset * patch->totalDofsPerCell, dofsArrayWithAll + offset * patch->totalDofsPerCell, patch->usercomputefctx));
19619566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->cellIS));
19629566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(patch->dofs, &dofsArray));
19639566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(patch->dofsWithAll, &dofsArrayWithAll));
19649566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(patch->cells, &cellsArray));
196592d50984SMatthew G. Knepley   if (patch->viewMatrix) {
196692d50984SMatthew G. Knepley     char name[PETSC_MAX_PATH_LEN];
196792d50984SMatthew G. Knepley 
196863a3b9bcSJacob Faibussowitsch     PetscCall(PetscSNPrintf(name, PETSC_MAX_PATH_LEN - 1, "Patch vector for Point %" PetscInt_FMT, point));
19699566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)F, name));
19709566063dSJacob Faibussowitsch     PetscCall(ObjectView((PetscObject)F, patch->viewerMatrix, patch->formatMatrix));
197192d50984SMatthew G. Knepley   }
19729566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PC_Patch_ComputeOp, pc, 0, 0, 0));
19733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
197492d50984SMatthew G. Knepley }
197592d50984SMatthew G. Knepley 
1976d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchComputeOperator_DMPlex_Private(PC pc, PetscInt patchNum, Vec x, Mat J, IS cellIS, PetscInt n, const PetscInt *l2p, const PetscInt *l2pWithAll, void *ctx)
1977d71ae5a4SJacob Faibussowitsch {
19785f824522SMatthew G. Knepley   PC_PATCH       *patch = (PC_PATCH *)pc->data;
1979b6bb21d1SLawrence Mitchell   DM              dm, plex;
19805f824522SMatthew G. Knepley   PetscSection    s;
19815f824522SMatthew G. Knepley   const PetscInt *parray, *oarray;
19825f824522SMatthew G. Knepley   PetscInt        Nf = patch->nsubspaces, Np, poff, p, f;
19835f824522SMatthew G. Knepley 
19845f824522SMatthew G. Knepley   PetscFunctionBegin;
19859566063dSJacob Faibussowitsch   PetscCall(PCGetDM(pc, &dm));
19869566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
1987b6bb21d1SLawrence Mitchell   dm = plex;
19889566063dSJacob Faibussowitsch   PetscCall(DMGetLocalSection(dm, &s));
19895f824522SMatthew G. Knepley   /* Set offset into patch */
19909566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetDof(patch->pointCounts, patchNum, &Np));
19919566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetOffset(patch->pointCounts, patchNum, &poff));
19929566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(patch->points, &parray));
19939566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(patch->offs, &oarray));
19945f824522SMatthew G. Knepley   for (f = 0; f < Nf; ++f) {
19955f824522SMatthew G. Knepley     for (p = 0; p < Np; ++p) {
19965f824522SMatthew G. Knepley       const PetscInt point = parray[poff + p];
19975f824522SMatthew G. Knepley       PetscInt       dof;
19985f824522SMatthew G. Knepley 
19999566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetFieldDof(patch->patchSection, point, f, &dof));
20009566063dSJacob Faibussowitsch       PetscCall(PetscSectionSetFieldOffset(patch->patchSection, point, f, oarray[(poff + p) * Nf + f]));
20019566063dSJacob Faibussowitsch       if (patch->nsubspaces == 1) PetscCall(PetscSectionSetOffset(patch->patchSection, point, oarray[(poff + p) * Nf + f]));
20029566063dSJacob Faibussowitsch       else PetscCall(PetscSectionSetOffset(patch->patchSection, point, -1));
20035f824522SMatthew G. Knepley     }
20045f824522SMatthew G. Knepley   }
20059566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(patch->points, &parray));
20069566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(patch->offs, &oarray));
20079566063dSJacob Faibussowitsch   if (patch->viewSection) PetscCall(ObjectView((PetscObject)patch->patchSection, patch->viewerSection, patch->formatSection));
20085f824522SMatthew G. Knepley   /* TODO Shut off MatViewFromOptions() in MatAssemblyEnd() here */
20099566063dSJacob Faibussowitsch   PetscCall(DMPlexComputeJacobian_Patch_Internal(dm, patch->patchSection, patch->patchSection, cellIS, 0.0, 0.0, x, NULL, J, J, ctx));
20109566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm));
20113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20125f824522SMatthew G. Knepley }
20135f824522SMatthew G. Knepley 
2014a685ae26SLawrence Mitchell /* This function zeros mat on entry */
2015d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchComputeOperator_Internal(PC pc, Vec x, Mat mat, PetscInt point, PetscBool withArtificial)
2016d71ae5a4SJacob Faibussowitsch {
20174bbf5ea8SMatthew G. Knepley   PC_PATCH       *patch = (PC_PATCH *)pc->data;
20184bbf5ea8SMatthew G. Knepley   const PetscInt *dofsArray;
20190904074fSPatrick Farrell   const PetscInt *dofsArrayWithAll = NULL;
20204bbf5ea8SMatthew G. Knepley   const PetscInt *cellsArray;
2021eb62eeaaSLawrence Mitchell   PetscInt        ncell, offset, pStart, pEnd, numIntFacets, intFacetOffset;
20224d04e9f1SPatrick Farrell   PetscBool       isNonlinear;
20234bbf5ea8SMatthew G. Knepley 
20244bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
20259566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PC_Patch_ComputeOp, pc, 0, 0, 0));
2026debbdec3SPatrick Farrell   isNonlinear = patch->isNonlinear;
2027ef1023bdSBarry Smith   PetscCheck(patch->usercomputeop, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PCPatchSetComputeOperator() to set callback");
2028c2e6f3c0SFlorian Wechsung   if (withArtificial) {
20299566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(patch->dofsWithArtificial, &dofsArray));
2030c2e6f3c0SFlorian Wechsung   } else {
20319566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(patch->dofs, &dofsArray));
2032c2e6f3c0SFlorian Wechsung   }
203348a46eb9SPierre Jolivet   if (isNonlinear) PetscCall(ISGetIndices(patch->dofsWithAll, &dofsArrayWithAll));
20349566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(patch->cells, &cellsArray));
20359566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(patch->cellCounts, &pStart, &pEnd));
20364bbf5ea8SMatthew G. Knepley 
20374bbf5ea8SMatthew G. Knepley   point += pStart;
203863a3b9bcSJacob Faibussowitsch   PetscCheck(point < pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Operator point %" PetscInt_FMT " not in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, pStart, pEnd);
20394bbf5ea8SMatthew G. Knepley 
20409566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetDof(patch->cellCounts, point, &ncell));
20419566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetOffset(patch->cellCounts, point, &offset));
20424bbf5ea8SMatthew G. Knepley   if (ncell <= 0) {
20439566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(PC_Patch_ComputeOp, pc, 0, 0, 0));
20443ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
20454bbf5ea8SMatthew G. Knepley   }
20469566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(mat));
2047fa84ea4cSLawrence Mitchell   if (patch->precomputeElementTensors) {
2048fa84ea4cSLawrence Mitchell     PetscInt           i;
2049fa84ea4cSLawrence Mitchell     PetscInt           ndof = patch->totalDofsPerCell;
2050fa84ea4cSLawrence Mitchell     const PetscScalar *elementTensors;
2051fa84ea4cSLawrence Mitchell 
20529566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(patch->cellMats, &elementTensors));
2053fa84ea4cSLawrence Mitchell     for (i = 0; i < ncell; i++) {
2054fa84ea4cSLawrence Mitchell       const PetscInt     cell = cellsArray[i + offset];
2055fa84ea4cSLawrence Mitchell       const PetscInt    *idx  = dofsArray + (offset + i) * ndof;
2056fe988be2SFlorian Wechsung       const PetscScalar *v    = elementTensors + patch->precomputedTensorLocations[cell] * ndof * ndof;
20579566063dSJacob Faibussowitsch       PetscCall(MatSetValues(mat, ndof, idx, ndof, idx, v, ADD_VALUES));
2058fa84ea4cSLawrence Mitchell     }
20599566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(patch->cellMats, &elementTensors));
20609566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
20619566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
2062fa84ea4cSLawrence Mitchell   } else {
20632aa6f319SMatthew G. Knepley     /* Cannot reuse the same IS because the geometry info is being cached in it */
20649566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncell, cellsArray + offset, PETSC_USE_POINTER, &patch->cellIS));
20659371c9d4SSatish Balay     PetscCallBack("PCPatch callback",
2066de0a9f35SPierre Jolivet                   patch->usercomputeop(pc, point, x, mat, patch->cellIS, ncell * patch->totalDofsPerCell, dofsArray + offset * patch->totalDofsPerCell, PetscSafePointerPlusOffset(dofsArrayWithAll, offset * patch->totalDofsPerCell), patch->usercomputeopctx));
2067fa84ea4cSLawrence Mitchell   }
206859109abcSLawrence Mitchell   if (patch->usercomputeopintfacet) {
20699566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(patch->intFacetCounts, point, &numIntFacets));
20709566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(patch->intFacetCounts, point, &intFacetOffset));
2071eb62eeaaSLawrence Mitchell     if (numIntFacets > 0) {
2072eb62eeaaSLawrence Mitchell       /* For each interior facet, grab the two cells (in local numbering, and concatenate dof numberings for those cells) */
2073eb62eeaaSLawrence Mitchell       PetscInt       *facetDofs = NULL, *facetDofsWithAll = NULL;
2074eb62eeaaSLawrence Mitchell       const PetscInt *intFacetsArray = NULL;
2075eb62eeaaSLawrence Mitchell       PetscInt        idx            = 0;
2076eb62eeaaSLawrence Mitchell       PetscInt        i, c, d;
2077de2d1767SPatrick Farrell       PetscInt        fStart;
2078b6bb21d1SLawrence Mitchell       DM              dm, plex;
2079eb62eeaaSLawrence Mitchell       IS              facetIS    = NULL;
2080eb62eeaaSLawrence Mitchell       const PetscInt *facetCells = NULL;
20817a50e09dSPatrick Farrell 
20829566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(patch->intFacetsToPatchCell, &facetCells));
20839566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(patch->intFacets, &intFacetsArray));
20849566063dSJacob Faibussowitsch       PetscCall(PCGetDM(pc, &dm));
20859566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, &plex));
2086b6bb21d1SLawrence Mitchell       dm = plex;
20879566063dSJacob Faibussowitsch       PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, NULL));
2088eb62eeaaSLawrence Mitchell       /* FIXME: Pull this malloc out. */
20899566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(2 * patch->totalDofsPerCell * numIntFacets, &facetDofs));
209048a46eb9SPierre Jolivet       if (dofsArrayWithAll) PetscCall(PetscMalloc1(2 * patch->totalDofsPerCell * numIntFacets, &facetDofsWithAll));
2091f98464cbSLawrence Mitchell       if (patch->precomputeElementTensors) {
2092f98464cbSLawrence Mitchell         PetscInt           nFacetDof = 2 * patch->totalDofsPerCell;
2093f98464cbSLawrence Mitchell         const PetscScalar *elementTensors;
2094f98464cbSLawrence Mitchell 
20959566063dSJacob Faibussowitsch         PetscCall(VecGetArrayRead(patch->intFacetMats, &elementTensors));
2096f98464cbSLawrence Mitchell 
2097f98464cbSLawrence Mitchell         for (i = 0; i < numIntFacets; i++) {
2098f98464cbSLawrence Mitchell           const PetscInt     facet = intFacetsArray[i + intFacetOffset];
2099de2d1767SPatrick Farrell           const PetscScalar *v     = elementTensors + patch->precomputedIntFacetTensorLocations[facet - fStart] * nFacetDof * nFacetDof;
2100f98464cbSLawrence Mitchell           idx                      = 0;
2101f98464cbSLawrence Mitchell           /*
2102f1580f4eSBarry Smith      0--1
2103f1580f4eSBarry Smith      |\-|
2104f1580f4eSBarry Smith      |+\|
2105f1580f4eSBarry Smith      2--3
2106f1580f4eSBarry Smith      [0, 2, 3, 0, 1, 3]
2107f98464cbSLawrence Mitchell    */
2108f98464cbSLawrence Mitchell           for (c = 0; c < 2; c++) {
2109f98464cbSLawrence Mitchell             const PetscInt cell = facetCells[2 * (intFacetOffset + i) + c];
2110f98464cbSLawrence Mitchell             for (d = 0; d < patch->totalDofsPerCell; d++) {
2111f98464cbSLawrence Mitchell               facetDofs[idx] = dofsArray[(offset + cell) * patch->totalDofsPerCell + d];
2112f98464cbSLawrence Mitchell               idx++;
2113f98464cbSLawrence Mitchell             }
2114f98464cbSLawrence Mitchell           }
21159566063dSJacob Faibussowitsch           PetscCall(MatSetValues(mat, nFacetDof, facetDofs, nFacetDof, facetDofs, v, ADD_VALUES));
2116f98464cbSLawrence Mitchell         }
21179566063dSJacob Faibussowitsch         PetscCall(VecRestoreArrayRead(patch->intFacetMats, &elementTensors));
2118f98464cbSLawrence Mitchell       } else {
2119eb62eeaaSLawrence Mitchell         /*
2120f1580f4eSBarry Smith      0--1
2121f1580f4eSBarry Smith      |\-|
2122f1580f4eSBarry Smith      |+\|
2123f1580f4eSBarry Smith      2--3
2124f1580f4eSBarry Smith      [0, 2, 3, 0, 1, 3]
2125eb62eeaaSLawrence Mitchell    */
2126eb62eeaaSLawrence Mitchell         for (i = 0; i < numIntFacets; i++) {
2127eb62eeaaSLawrence Mitchell           for (c = 0; c < 2; c++) {
2128eb62eeaaSLawrence Mitchell             const PetscInt cell = facetCells[2 * (intFacetOffset + i) + c];
2129eb62eeaaSLawrence Mitchell             for (d = 0; d < patch->totalDofsPerCell; d++) {
2130eb62eeaaSLawrence Mitchell               facetDofs[idx] = dofsArray[(offset + cell) * patch->totalDofsPerCell + d];
2131ad540459SPierre Jolivet               if (dofsArrayWithAll) facetDofsWithAll[idx] = dofsArrayWithAll[(offset + cell) * patch->totalDofsPerCell + d];
2132eb62eeaaSLawrence Mitchell               idx++;
2133eb62eeaaSLawrence Mitchell             }
2134eb62eeaaSLawrence Mitchell           }
2135eb62eeaaSLawrence Mitchell         }
21369566063dSJacob Faibussowitsch         PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numIntFacets, intFacetsArray + intFacetOffset, PETSC_USE_POINTER, &facetIS));
21379566063dSJacob Faibussowitsch         PetscCall(patch->usercomputeopintfacet(pc, point, x, mat, facetIS, 2 * numIntFacets * patch->totalDofsPerCell, facetDofs, facetDofsWithAll, patch->usercomputeopintfacetctx));
21389566063dSJacob Faibussowitsch         PetscCall(ISDestroy(&facetIS));
2139f98464cbSLawrence Mitchell       }
21409566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(patch->intFacetsToPatchCell, &facetCells));
21419566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(patch->intFacets, &intFacetsArray));
21429566063dSJacob Faibussowitsch       PetscCall(PetscFree(facetDofs));
21439566063dSJacob Faibussowitsch       PetscCall(PetscFree(facetDofsWithAll));
21449566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&dm));
2145eb62eeaaSLawrence Mitchell     }
214659109abcSLawrence Mitchell   }
21476710cc29SPatrick Farrell 
21489566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
21499566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
21506710cc29SPatrick Farrell 
2151c73d2cf6SLawrence Mitchell   if (!(withArtificial || isNonlinear) && patch->denseinverse) {
2152c73d2cf6SLawrence Mitchell     MatFactorInfo info;
2153c73d2cf6SLawrence Mitchell     PetscBool     flg;
21549566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATSEQDENSE, &flg));
215528b400f6SJacob Faibussowitsch     PetscCheck(flg, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONGSTATE, "Invalid Mat type for dense inverse");
21569566063dSJacob Faibussowitsch     PetscCall(MatFactorInfoInitialize(&info));
21579566063dSJacob Faibussowitsch     PetscCall(MatLUFactor(mat, NULL, NULL, &info));
21589566063dSJacob Faibussowitsch     PetscCall(MatSeqDenseInvertFactors_Private(mat));
2159c73d2cf6SLawrence Mitchell   }
21609566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->cellIS));
21614d04e9f1SPatrick Farrell   if (withArtificial) {
21629566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(patch->dofsWithArtificial, &dofsArray));
2163c2e6f3c0SFlorian Wechsung   } else {
21649566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(patch->dofs, &dofsArray));
2165c2e6f3c0SFlorian Wechsung   }
216648a46eb9SPierre Jolivet   if (isNonlinear) PetscCall(ISRestoreIndices(patch->dofsWithAll, &dofsArrayWithAll));
21679566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(patch->cells, &cellsArray));
21682aa6f319SMatthew G. Knepley   if (patch->viewMatrix) {
21692aa6f319SMatthew G. Knepley     char name[PETSC_MAX_PATH_LEN];
21702aa6f319SMatthew G. Knepley 
217163a3b9bcSJacob Faibussowitsch     PetscCall(PetscSNPrintf(name, PETSC_MAX_PATH_LEN - 1, "Patch matrix for Point %" PetscInt_FMT, point));
21729566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)mat, name));
21739566063dSJacob Faibussowitsch     PetscCall(ObjectView((PetscObject)mat, patch->viewerMatrix, patch->formatMatrix));
21742aa6f319SMatthew G. Knepley   }
21759566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PC_Patch_ComputeOp, pc, 0, 0, 0));
21763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21774bbf5ea8SMatthew G. Knepley }
21784bbf5ea8SMatthew G. Knepley 
2179d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValues_PCPatch_Private(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar *v, InsertMode addv)
2180d71ae5a4SJacob Faibussowitsch {
2181fa84ea4cSLawrence Mitchell   Vec          data;
2182fa84ea4cSLawrence Mitchell   PetscScalar *array;
2183fe988be2SFlorian Wechsung   PetscInt     bs, nz, i, j, cell;
2184fa84ea4cSLawrence Mitchell 
21859566063dSJacob Faibussowitsch   PetscCall(MatShellGetContext(mat, &data));
21869566063dSJacob Faibussowitsch   PetscCall(VecGetBlockSize(data, &bs));
21879566063dSJacob Faibussowitsch   PetscCall(VecGetSize(data, &nz));
21889566063dSJacob Faibussowitsch   PetscCall(VecGetArray(data, &array));
218908401ef6SPierre Jolivet   PetscCheck(m == n, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONG, "Only for square insertion");
219033cbca70SPatrick Farrell   cell = (PetscInt)(idxm[0] / bs); /* use the fact that this is called once per cell */
2191fa84ea4cSLawrence Mitchell   for (i = 0; i < m; i++) {
219208401ef6SPierre Jolivet     PetscCheck(idxm[i] == idxn[i], PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONG, "Row and column indices must match!");
2193fa84ea4cSLawrence Mitchell     for (j = 0; j < n; j++) {
2194fa84ea4cSLawrence Mitchell       const PetscScalar v_ = v[i * bs + j];
2195fa84ea4cSLawrence Mitchell       /* Indexing is special to the data structure we have! */
2196fa84ea4cSLawrence Mitchell       if (addv == INSERT_VALUES) {
2197fe988be2SFlorian Wechsung         array[cell * bs * bs + i * bs + j] = v_;
2198fa84ea4cSLawrence Mitchell       } else {
2199fe988be2SFlorian Wechsung         array[cell * bs * bs + i * bs + j] += v_;
2200fa84ea4cSLawrence Mitchell       }
2201fa84ea4cSLawrence Mitchell     }
2202fa84ea4cSLawrence Mitchell   }
22039566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(data, &array));
22043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2205fa84ea4cSLawrence Mitchell }
2206fa84ea4cSLawrence Mitchell 
2207d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchPrecomputePatchTensors_Private(PC pc)
2208d71ae5a4SJacob Faibussowitsch {
2209fa84ea4cSLawrence Mitchell   PC_PATCH       *patch = (PC_PATCH *)pc->data;
2210fa84ea4cSLawrence Mitchell   const PetscInt *cellsArray;
2211fa84ea4cSLawrence Mitchell   PetscInt        ncell, offset;
2212fa84ea4cSLawrence Mitchell   const PetscInt *dofMapArray;
2213fa84ea4cSLawrence Mitchell   PetscInt        i, j;
2214fa84ea4cSLawrence Mitchell   IS              dofMap;
2215fa84ea4cSLawrence Mitchell   IS              cellIS;
2216fa84ea4cSLawrence Mitchell   const PetscInt  ndof = patch->totalDofsPerCell;
2217fa84ea4cSLawrence Mitchell   Mat             vecMat;
2218fe988be2SFlorian Wechsung   PetscInt        cStart, cEnd;
2219fe988be2SFlorian Wechsung   DM              dm, plex;
2220fe988be2SFlorian Wechsung 
22219566063dSJacob Faibussowitsch   PetscCall(ISGetSize(patch->cells, &ncell));
2222e9c2c94bSFlorian Wechsung   if (!ncell) { /* No cells to assemble over -> skip */
22233ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2224e9c2c94bSFlorian Wechsung   }
2225e9c2c94bSFlorian Wechsung 
22269566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PC_Patch_ComputeOp, pc, 0, 0, 0));
2227fa84ea4cSLawrence Mitchell 
22289566063dSJacob Faibussowitsch   PetscCall(PCGetDM(pc, &dm));
22299566063dSJacob Faibussowitsch   PetscCall(DMConvert(dm, DMPLEX, &plex));
2230b6bb21d1SLawrence Mitchell   dm = plex;
2231fa84ea4cSLawrence Mitchell   if (!patch->allCells) {
2232fa84ea4cSLawrence Mitchell     PetscHSetI    cells;
2233fa84ea4cSLawrence Mitchell     PetscHashIter hi;
2234fa84ea4cSLawrence Mitchell     PetscInt      pStart, pEnd;
2235fa84ea4cSLawrence Mitchell     PetscInt     *allCells = NULL;
22369566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&cells));
22379566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(patch->cells, &cellsArray));
22389566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(patch->cellCounts, &pStart, &pEnd));
2239fa84ea4cSLawrence Mitchell     for (i = pStart; i < pEnd; i++) {
22409566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(patch->cellCounts, i, &ncell));
22419566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(patch->cellCounts, i, &offset));
2242fa84ea4cSLawrence Mitchell       if (ncell <= 0) continue;
224348a46eb9SPierre Jolivet       for (j = 0; j < ncell; j++) PetscCall(PetscHSetIAdd(cells, cellsArray[offset + j]));
2244fa84ea4cSLawrence Mitchell     }
22459566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(patch->cells, &cellsArray));
22469566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetSize(cells, &ncell));
22479566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncell, &allCells));
22489566063dSJacob Faibussowitsch     PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
22499566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(cEnd - cStart, &patch->precomputedTensorLocations));
2250fa84ea4cSLawrence Mitchell     i = 0;
2251fa84ea4cSLawrence Mitchell     PetscHashIterBegin(cells, hi);
2252fa84ea4cSLawrence Mitchell     while (!PetscHashIterAtEnd(cells, hi)) {
2253fe988be2SFlorian Wechsung       PetscHashIterGetKey(cells, hi, allCells[i]);
2254fe988be2SFlorian Wechsung       patch->precomputedTensorLocations[allCells[i]] = i;
2255fa84ea4cSLawrence Mitchell       PetscHashIterNext(cells, hi);
2256fe988be2SFlorian Wechsung       i++;
2257fa84ea4cSLawrence Mitchell     }
22589566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&cells));
22599566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncell, allCells, PETSC_OWN_POINTER, &patch->allCells));
2260fa84ea4cSLawrence Mitchell   }
22619566063dSJacob Faibussowitsch   PetscCall(ISGetSize(patch->allCells, &ncell));
2262fa84ea4cSLawrence Mitchell   if (!patch->cellMats) {
22639566063dSJacob Faibussowitsch     PetscCall(VecCreateSeq(PETSC_COMM_SELF, ncell * ndof * ndof, &patch->cellMats));
22649566063dSJacob Faibussowitsch     PetscCall(VecSetBlockSize(patch->cellMats, ndof));
2265fa84ea4cSLawrence Mitchell   }
22669566063dSJacob Faibussowitsch   PetscCall(VecSet(patch->cellMats, 0));
2267fa84ea4cSLawrence Mitchell 
2268d0609cedSBarry Smith   PetscCall(MatCreateShell(PETSC_COMM_SELF, ncell * ndof, ncell * ndof, ncell * ndof, ncell * ndof, (void *)patch->cellMats, &vecMat));
22699566063dSJacob Faibussowitsch   PetscCall(MatShellSetOperation(vecMat, MATOP_SET_VALUES, (void (*)(void)) & MatSetValues_PCPatch_Private));
22709566063dSJacob Faibussowitsch   PetscCall(ISGetSize(patch->allCells, &ncell));
22719566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(PETSC_COMM_SELF, ndof * ncell, 0, 1, &dofMap));
22729566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(dofMap, &dofMapArray));
22739566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(patch->allCells, &cellsArray));
22749566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncell, cellsArray, PETSC_USE_POINTER, &cellIS));
2275fa84ea4cSLawrence Mitchell   /* TODO: Fix for DMPlex compute op, this bypasses a lot of the machinery and just assembles every element tensor. */
2276792fecdfSBarry Smith   PetscCallBack("PCPatch callback", patch->usercomputeop(pc, -1, NULL, vecMat, cellIS, ndof * ncell, dofMapArray, NULL, patch->usercomputeopctx));
22779566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&cellIS));
22789566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&vecMat));
22799566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(patch->allCells, &cellsArray));
22809566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(dofMap, &dofMapArray));
22819566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&dofMap));
2282f98464cbSLawrence Mitchell 
2283f98464cbSLawrence Mitchell   if (patch->usercomputeopintfacet) {
2284f98464cbSLawrence Mitchell     PetscInt        nIntFacets;
2285f98464cbSLawrence Mitchell     IS              intFacetsIS;
2286f98464cbSLawrence Mitchell     const PetscInt *intFacetsArray = NULL;
2287f98464cbSLawrence Mitchell     if (!patch->allIntFacets) {
2288f98464cbSLawrence Mitchell       PetscHSetI    facets;
2289f98464cbSLawrence Mitchell       PetscHashIter hi;
2290f98464cbSLawrence Mitchell       PetscInt      pStart, pEnd, fStart, fEnd;
2291f98464cbSLawrence Mitchell       PetscInt     *allIntFacets = NULL;
22929566063dSJacob Faibussowitsch       PetscCall(PetscHSetICreate(&facets));
22939566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(patch->intFacets, &intFacetsArray));
22949566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(patch->intFacetCounts, &pStart, &pEnd));
22959566063dSJacob Faibussowitsch       PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd));
2296f98464cbSLawrence Mitchell       for (i = pStart; i < pEnd; i++) {
22979566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(patch->intFacetCounts, i, &nIntFacets));
22989566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(patch->intFacetCounts, i, &offset));
2299f98464cbSLawrence Mitchell         if (nIntFacets <= 0) continue;
230048a46eb9SPierre Jolivet         for (j = 0; j < nIntFacets; j++) PetscCall(PetscHSetIAdd(facets, intFacetsArray[offset + j]));
2301f98464cbSLawrence Mitchell       }
23029566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(patch->intFacets, &intFacetsArray));
23039566063dSJacob Faibussowitsch       PetscCall(PetscHSetIGetSize(facets, &nIntFacets));
23049566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nIntFacets, &allIntFacets));
23059566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(fEnd - fStart, &patch->precomputedIntFacetTensorLocations));
2306f98464cbSLawrence Mitchell       i = 0;
2307f98464cbSLawrence Mitchell       PetscHashIterBegin(facets, hi);
2308f98464cbSLawrence Mitchell       while (!PetscHashIterAtEnd(facets, hi)) {
2309f98464cbSLawrence Mitchell         PetscHashIterGetKey(facets, hi, allIntFacets[i]);
2310de2d1767SPatrick Farrell         patch->precomputedIntFacetTensorLocations[allIntFacets[i] - fStart] = i;
2311f98464cbSLawrence Mitchell         PetscHashIterNext(facets, hi);
2312f98464cbSLawrence Mitchell         i++;
2313f98464cbSLawrence Mitchell       }
23149566063dSJacob Faibussowitsch       PetscCall(PetscHSetIDestroy(&facets));
23159566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, nIntFacets, allIntFacets, PETSC_OWN_POINTER, &patch->allIntFacets));
2316f98464cbSLawrence Mitchell     }
23179566063dSJacob Faibussowitsch     PetscCall(ISGetSize(patch->allIntFacets, &nIntFacets));
2318f98464cbSLawrence Mitchell     if (!patch->intFacetMats) {
23199566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, nIntFacets * ndof * ndof * 4, &patch->intFacetMats));
23209566063dSJacob Faibussowitsch       PetscCall(VecSetBlockSize(patch->intFacetMats, ndof * 2));
2321f98464cbSLawrence Mitchell     }
23229566063dSJacob Faibussowitsch     PetscCall(VecSet(patch->intFacetMats, 0));
2323f98464cbSLawrence Mitchell 
2324d0609cedSBarry Smith     PetscCall(MatCreateShell(PETSC_COMM_SELF, nIntFacets * ndof * 2, nIntFacets * ndof * 2, nIntFacets * ndof * 2, nIntFacets * ndof * 2, (void *)patch->intFacetMats, &vecMat));
23259566063dSJacob Faibussowitsch     PetscCall(MatShellSetOperation(vecMat, MATOP_SET_VALUES, (void (*)(void)) & MatSetValues_PCPatch_Private));
23269566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, 2 * ndof * nIntFacets, 0, 1, &dofMap));
23279566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(dofMap, &dofMapArray));
23289566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(patch->allIntFacets, &intFacetsArray));
23299566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, nIntFacets, intFacetsArray, PETSC_USE_POINTER, &intFacetsIS));
2330f98464cbSLawrence Mitchell     /* TODO: Fix for DMPlex compute op, this bypasses a lot of the machinery and just assembles every element tensor. */
2331792fecdfSBarry Smith     PetscCallBack("PCPatch callback (interior facets)", patch->usercomputeopintfacet(pc, -1, NULL, vecMat, intFacetsIS, 2 * ndof * nIntFacets, dofMapArray, NULL, patch->usercomputeopintfacetctx));
23329566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&intFacetsIS));
23339566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&vecMat));
23349566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(patch->allIntFacets, &intFacetsArray));
23359566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(dofMap, &dofMapArray));
23369566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&dofMap));
2337f98464cbSLawrence Mitchell   }
23389566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&dm));
23399566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PC_Patch_ComputeOp, pc, 0, 0, 0));
23403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2341fa84ea4cSLawrence Mitchell }
2342fa84ea4cSLawrence Mitchell 
2343d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatch_ScatterLocal_Private(PC pc, PetscInt p, Vec x, Vec y, InsertMode mode, ScatterMode scat, PatchScatterType scattertype)
2344d71ae5a4SJacob Faibussowitsch {
23454bbf5ea8SMatthew G. Knepley   PC_PATCH          *patch     = (PC_PATCH *)pc->data;
23464bbf5ea8SMatthew G. Knepley   const PetscScalar *xArray    = NULL;
23474bbf5ea8SMatthew G. Knepley   PetscScalar       *yArray    = NULL;
23484bbf5ea8SMatthew G. Knepley   const PetscInt    *gtolArray = NULL;
23494bbf5ea8SMatthew G. Knepley   PetscInt           dof, offset, lidx;
23504bbf5ea8SMatthew G. Knepley 
23514bbf5ea8SMatthew G. Knepley   PetscFunctionBeginHot;
23529566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(x, &xArray));
23539566063dSJacob Faibussowitsch   PetscCall(VecGetArray(y, &yArray));
23540904074fSPatrick Farrell   if (scattertype == SCATTER_WITHARTIFICIAL) {
23559566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(patch->gtolCountsWithArtificial, p, &dof));
23569566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(patch->gtolCountsWithArtificial, p, &offset));
23579566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(patch->gtolWithArtificial, &gtolArray));
23580904074fSPatrick Farrell   } else if (scattertype == SCATTER_WITHALL) {
23599566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(patch->gtolCountsWithAll, p, &dof));
23609566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(patch->gtolCountsWithAll, p, &offset));
23619566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(patch->gtolWithAll, &gtolArray));
2362c2e6f3c0SFlorian Wechsung   } else {
23639566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetDof(patch->gtolCounts, p, &dof));
23649566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetOffset(patch->gtolCounts, p, &offset));
23659566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(patch->gtol, &gtolArray));
2366c2e6f3c0SFlorian Wechsung   }
23672472a847SBarry Smith   PetscCheck(mode != INSERT_VALUES || scat == SCATTER_FORWARD, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Can't insert if not scattering forward");
23682472a847SBarry Smith   PetscCheck(mode != ADD_VALUES || scat == SCATTER_REVERSE, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Can't add if not scattering reverse");
23694bbf5ea8SMatthew G. Knepley   for (lidx = 0; lidx < dof; ++lidx) {
23704bbf5ea8SMatthew G. Knepley     const PetscInt gidx = gtolArray[offset + lidx];
23714bbf5ea8SMatthew G. Knepley 
23724bbf5ea8SMatthew G. Knepley     if (mode == INSERT_VALUES) yArray[lidx] = xArray[gidx]; /* Forward */
23734bbf5ea8SMatthew G. Knepley     else yArray[gidx] += xArray[lidx];                      /* Reverse */
23744bbf5ea8SMatthew G. Knepley   }
23750904074fSPatrick Farrell   if (scattertype == SCATTER_WITHARTIFICIAL) {
23769566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(patch->gtolWithArtificial, &gtolArray));
23770904074fSPatrick Farrell   } else if (scattertype == SCATTER_WITHALL) {
23789566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(patch->gtolWithAll, &gtolArray));
2379c2e6f3c0SFlorian Wechsung   } else {
23809566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(patch->gtol, &gtolArray));
2381c2e6f3c0SFlorian Wechsung   }
23829566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(x, &xArray));
23839566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(y, &yArray));
23843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23854bbf5ea8SMatthew G. Knepley }
23864bbf5ea8SMatthew G. Knepley 
2387d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCSetUp_PATCH_Linear(PC pc)
2388d71ae5a4SJacob Faibussowitsch {
2389dadc69c5SMatthew G. Knepley   PC_PATCH   *patch = (PC_PATCH *)pc->data;
2390dadc69c5SMatthew G. Knepley   const char *prefix;
2391dadc69c5SMatthew G. Knepley   PetscInt    i;
2392dadc69c5SMatthew G. Knepley 
2393dadc69c5SMatthew G. Knepley   PetscFunctionBegin;
2394dadc69c5SMatthew G. Knepley   if (!pc->setupcalled) {
23957827d75bSBarry Smith     PetscCheck(patch->save_operators || !patch->denseinverse, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONGSTATE, "Can't have dense inverse without save operators");
2396c73d2cf6SLawrence Mitchell     if (!patch->denseinverse) {
23979566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(patch->npatch, &patch->solver));
23989566063dSJacob Faibussowitsch       PetscCall(PCGetOptionsPrefix(pc, &prefix));
2399dadc69c5SMatthew G. Knepley       for (i = 0; i < patch->npatch; ++i) {
2400dadc69c5SMatthew G. Knepley         KSP ksp;
2401dadc69c5SMatthew G. Knepley         PC  subpc;
2402dadc69c5SMatthew G. Knepley 
24039566063dSJacob Faibussowitsch         PetscCall(KSPCreate(PETSC_COMM_SELF, &ksp));
24043821be0aSBarry Smith         PetscCall(KSPSetNestLevel(ksp, pc->kspnestlevel));
24059566063dSJacob Faibussowitsch         PetscCall(KSPSetErrorIfNotConverged(ksp, pc->erroriffailure));
24069566063dSJacob Faibussowitsch         PetscCall(KSPSetOptionsPrefix(ksp, prefix));
24079566063dSJacob Faibussowitsch         PetscCall(KSPAppendOptionsPrefix(ksp, "sub_"));
24089566063dSJacob Faibussowitsch         PetscCall(PetscObjectIncrementTabLevel((PetscObject)ksp, (PetscObject)pc, 1));
24099566063dSJacob Faibussowitsch         PetscCall(KSPGetPC(ksp, &subpc));
24109566063dSJacob Faibussowitsch         PetscCall(PetscObjectIncrementTabLevel((PetscObject)subpc, (PetscObject)pc, 1));
2411dadc69c5SMatthew G. Knepley         patch->solver[i] = (PetscObject)ksp;
2412dadc69c5SMatthew G. Knepley       }
2413dadc69c5SMatthew G. Knepley     }
2414c73d2cf6SLawrence Mitchell   }
2415dadc69c5SMatthew G. Knepley   if (patch->save_operators) {
24161baa6e33SBarry Smith     if (patch->precomputeElementTensors) PetscCall(PCPatchPrecomputePatchTensors_Private(pc));
2417dadc69c5SMatthew G. Knepley     for (i = 0; i < patch->npatch; ++i) {
24189566063dSJacob Faibussowitsch       PetscCall(PCPatchComputeOperator_Internal(pc, NULL, patch->mat[i], i, PETSC_FALSE));
2419c73d2cf6SLawrence Mitchell       if (!patch->denseinverse) {
24209566063dSJacob Faibussowitsch         PetscCall(KSPSetOperators((KSP)patch->solver[i], patch->mat[i], patch->mat[i]));
24219d4fc724SLawrence Mitchell       } else if (patch->mat[i] && !patch->densesolve) {
24229d4fc724SLawrence Mitchell         /* Setup matmult callback */
24239566063dSJacob Faibussowitsch         PetscCall(MatGetOperation(patch->mat[i], MATOP_MULT, (void (**)(void)) & patch->densesolve));
2424dadc69c5SMatthew G. Knepley       }
2425dadc69c5SMatthew G. Knepley     }
2426c73d2cf6SLawrence Mitchell   }
242734d8b122SPatrick Farrell   if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) {
242834d8b122SPatrick Farrell     for (i = 0; i < patch->npatch; ++i) {
24291202d238SPatrick Farrell       /* Instead of padding patch->patchUpdate with zeros to get */
24301202d238SPatrick Farrell       /* patch->patchUpdateWithArtificial and then multiplying with the matrix, */
243134d8b122SPatrick Farrell       /* just get rid of the columns that correspond to the dofs with */
243234d8b122SPatrick Farrell       /* artificial bcs. That's of course fairly inefficient, hopefully we */
243334d8b122SPatrick Farrell       /* can just assemble the rectangular matrix in the first place. */
243434d8b122SPatrick Farrell       Mat      matSquare;
243534d8b122SPatrick Farrell       IS       rowis;
243634d8b122SPatrick Farrell       PetscInt dof;
243734d8b122SPatrick Farrell 
24389566063dSJacob Faibussowitsch       PetscCall(MatGetSize(patch->mat[i], &dof, NULL));
243934d8b122SPatrick Farrell       if (dof == 0) {
244034d8b122SPatrick Farrell         patch->matWithArtificial[i] = NULL;
244134d8b122SPatrick Farrell         continue;
244234d8b122SPatrick Farrell       }
244334d8b122SPatrick Farrell 
24449566063dSJacob Faibussowitsch       PetscCall(PCPatchCreateMatrix_Private(pc, i, &matSquare, PETSC_TRUE));
24459566063dSJacob Faibussowitsch       PetscCall(PCPatchComputeOperator_Internal(pc, NULL, matSquare, i, PETSC_TRUE));
244634d8b122SPatrick Farrell 
24479566063dSJacob Faibussowitsch       PetscCall(MatGetSize(matSquare, &dof, NULL));
24489566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, dof, 0, 1, &rowis));
244934d8b122SPatrick Farrell       if (pc->setupcalled) {
24509566063dSJacob Faibussowitsch         PetscCall(MatCreateSubMatrix(matSquare, rowis, patch->dofMappingWithoutToWithArtificial[i], MAT_REUSE_MATRIX, &patch->matWithArtificial[i]));
245134d8b122SPatrick Farrell       } else {
24529566063dSJacob Faibussowitsch         PetscCall(MatCreateSubMatrix(matSquare, rowis, patch->dofMappingWithoutToWithArtificial[i], MAT_INITIAL_MATRIX, &patch->matWithArtificial[i]));
245334d8b122SPatrick Farrell       }
24549566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&rowis));
24559566063dSJacob Faibussowitsch       PetscCall(MatDestroy(&matSquare));
245634d8b122SPatrick Farrell     }
245734d8b122SPatrick Farrell   }
24583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2459dadc69c5SMatthew G. Knepley }
2460dadc69c5SMatthew G. Knepley 
2461d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCSetUp_PATCH(PC pc)
2462d71ae5a4SJacob Faibussowitsch {
24634bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
2464557beb66SLawrence Mitchell   PetscInt  i;
246539fd2e8aSPatrick Farrell   PetscBool isNonlinear;
24669d4fc724SLawrence Mitchell   PetscInt  maxDof = -1, maxDofWithArtificial = -1;
24674bbf5ea8SMatthew G. Knepley 
24684bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
24694bbf5ea8SMatthew G. Knepley   if (!pc->setupcalled) {
24704bbf5ea8SMatthew G. Knepley     PetscInt pStart, pEnd, p;
24714bbf5ea8SMatthew G. Knepley     PetscInt localSize;
24724bbf5ea8SMatthew G. Knepley 
24739566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(PC_Patch_CreatePatches, pc, 0, 0, 0));
24744bbf5ea8SMatthew G. Knepley 
2475debbdec3SPatrick Farrell     isNonlinear = patch->isNonlinear;
24765f824522SMatthew G. Knepley     if (!patch->nsubspaces) {
2477b6bb21d1SLawrence Mitchell       DM           dm, plex;
24785f824522SMatthew G. Knepley       PetscSection s;
2479bd026e97SJed Brown       PetscInt     cStart, cEnd, c, Nf, f, numGlobalBcs = 0, *globalBcs, *Nb, **cellDofs;
24805f824522SMatthew G. Knepley 
24819566063dSJacob Faibussowitsch       PetscCall(PCGetDM(pc, &dm));
248228b400f6SJacob Faibussowitsch       PetscCheck(dm, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONG, "Must set DM for PCPATCH or call PCPatchSetDiscretisationInfo()");
24839566063dSJacob Faibussowitsch       PetscCall(DMConvert(dm, DMPLEX, &plex));
2484b6bb21d1SLawrence Mitchell       dm = plex;
24859566063dSJacob Faibussowitsch       PetscCall(DMGetLocalSection(dm, &s));
24869566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetNumFields(s, &Nf));
24879566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetChart(s, &pStart, &pEnd));
24885f824522SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
24895f824522SMatthew G. Knepley         PetscInt cdof;
24909566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
24915f824522SMatthew G. Knepley         numGlobalBcs += cdof;
24925f824522SMatthew G. Knepley       }
24939566063dSJacob Faibussowitsch       PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd));
24949566063dSJacob Faibussowitsch       PetscCall(PetscMalloc3(Nf, &Nb, Nf, &cellDofs, numGlobalBcs, &globalBcs));
24955f824522SMatthew G. Knepley       for (f = 0; f < Nf; ++f) {
24965f824522SMatthew G. Knepley         PetscFE        fe;
24975f824522SMatthew G. Knepley         PetscDualSpace sp;
24985f824522SMatthew G. Knepley         PetscInt       cdoff = 0;
24995f824522SMatthew G. Knepley 
25009566063dSJacob Faibussowitsch         PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe));
25019566063dSJacob Faibussowitsch         /* PetscCall(PetscFEGetNumComponents(fe, &Nc[f])); */
25029566063dSJacob Faibussowitsch         PetscCall(PetscFEGetDualSpace(fe, &sp));
25039566063dSJacob Faibussowitsch         PetscCall(PetscDualSpaceGetDimension(sp, &Nb[f]));
25045f824522SMatthew G. Knepley 
25059566063dSJacob Faibussowitsch         PetscCall(PetscMalloc1((cEnd - cStart) * Nb[f], &cellDofs[f]));
25065f824522SMatthew G. Knepley         for (c = cStart; c < cEnd; ++c) {
25075f824522SMatthew G. Knepley           PetscInt *closure = NULL;
25085f824522SMatthew G. Knepley           PetscInt  clSize  = 0, cl;
25095f824522SMatthew G. Knepley 
25109566063dSJacob Faibussowitsch           PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &clSize, &closure));
25115f824522SMatthew G. Knepley           for (cl = 0; cl < clSize * 2; cl += 2) {
25125f824522SMatthew G. Knepley             const PetscInt p = closure[cl];
25135f824522SMatthew G. Knepley             PetscInt       fdof, d, foff;
25145f824522SMatthew G. Knepley 
25159566063dSJacob Faibussowitsch             PetscCall(PetscSectionGetFieldDof(s, p, f, &fdof));
25169566063dSJacob Faibussowitsch             PetscCall(PetscSectionGetFieldOffset(s, p, f, &foff));
25175f824522SMatthew G. Knepley             for (d = 0; d < fdof; ++d, ++cdoff) cellDofs[f][cdoff] = foff + d;
25185f824522SMatthew G. Knepley           }
25199566063dSJacob Faibussowitsch           PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &clSize, &closure));
25205f824522SMatthew G. Knepley         }
252163a3b9bcSJacob Faibussowitsch         PetscCheck(cdoff == (cEnd - cStart) * Nb[f], PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_SIZ, "Total number of cellDofs %" PetscInt_FMT " for field %" PetscInt_FMT " should be Nc (%" PetscInt_FMT ") * cellDof (%" PetscInt_FMT ")", cdoff, f, cEnd - cStart, Nb[f]);
25225f824522SMatthew G. Knepley       }
25235f824522SMatthew G. Knepley       numGlobalBcs = 0;
25245f824522SMatthew G. Knepley       for (p = pStart; p < pEnd; ++p) {
25255f824522SMatthew G. Knepley         const PetscInt *ind;
25265f824522SMatthew G. Knepley         PetscInt        off, cdof, d;
25275f824522SMatthew G. Knepley 
25289566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(s, p, &off));
25299566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintDof(s, p, &cdof));
25309566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetConstraintIndices(s, p, &ind));
25315f824522SMatthew G. Knepley         for (d = 0; d < cdof; ++d) globalBcs[numGlobalBcs++] = off + ind[d];
25325f824522SMatthew G. Knepley       }
25335f824522SMatthew G. Knepley 
25349566063dSJacob Faibussowitsch       PetscCall(PCPatchSetDiscretisationInfoCombined(pc, dm, Nb, (const PetscInt **)cellDofs, numGlobalBcs, globalBcs, numGlobalBcs, globalBcs));
253548a46eb9SPierre Jolivet       for (f = 0; f < Nf; ++f) PetscCall(PetscFree(cellDofs[f]));
25369566063dSJacob Faibussowitsch       PetscCall(PetscFree3(Nb, cellDofs, globalBcs));
25379566063dSJacob Faibussowitsch       PetscCall(PCPatchSetComputeFunction(pc, PCPatchComputeFunction_DMPlex_Private, NULL));
25389566063dSJacob Faibussowitsch       PetscCall(PCPatchSetComputeOperator(pc, PCPatchComputeOperator_DMPlex_Private, NULL));
25399566063dSJacob Faibussowitsch       PetscCall(DMDestroy(&dm));
25405f824522SMatthew G. Knepley     }
25415f824522SMatthew G. Knepley 
25424bbf5ea8SMatthew G. Knepley     localSize = patch->subspaceOffsets[patch->nsubspaces];
25439566063dSJacob Faibussowitsch     PetscCall(VecCreateSeq(PETSC_COMM_SELF, localSize, &patch->localRHS));
25449566063dSJacob Faibussowitsch     PetscCall(VecSetUp(patch->localRHS));
25459566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(patch->localRHS, &patch->localUpdate));
25469566063dSJacob Faibussowitsch     PetscCall(PCPatchCreateCellPatches(pc));
25479566063dSJacob Faibussowitsch     PetscCall(PCPatchCreateCellPatchDiscretisationInfo(pc));
25484bbf5ea8SMatthew G. Knepley 
25494bbf5ea8SMatthew G. Knepley     /* OK, now build the work vectors */
25509566063dSJacob Faibussowitsch     PetscCall(PetscSectionGetChart(patch->gtolCounts, &pStart, &pEnd));
2551c2e6f3c0SFlorian Wechsung 
255248a46eb9SPierre Jolivet     if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) PetscCall(PetscMalloc1(patch->npatch, &patch->dofMappingWithoutToWithArtificial));
255348a46eb9SPierre Jolivet     if (isNonlinear) PetscCall(PetscMalloc1(patch->npatch, &patch->dofMappingWithoutToWithAll));
25544bbf5ea8SMatthew G. Knepley     for (p = pStart; p < pEnd; ++p) {
25554bbf5ea8SMatthew G. Knepley       PetscInt dof;
25564bbf5ea8SMatthew G. Knepley 
25579566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(patch->gtolCounts, p, &dof));
25582f613bf5SBarry Smith       maxDof = PetscMax(maxDof, dof);
25590904074fSPatrick Farrell       if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) {
25603bb0e8f7SKarl Rupp         const PetscInt *gtolArray, *gtolArrayWithArtificial = NULL;
25613bb0e8f7SKarl Rupp         PetscInt        numPatchDofs, offset;
25623bb0e8f7SKarl Rupp         PetscInt        numPatchDofsWithArtificial, offsetWithArtificial;
25633bb0e8f7SKarl Rupp         PetscInt        dofWithoutArtificialCounter = 0;
25643bb0e8f7SKarl Rupp         PetscInt       *patchWithoutArtificialToWithArtificialArray;
25653bb0e8f7SKarl Rupp 
25669566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(patch->gtolCountsWithArtificial, p, &dof));
25679d4fc724SLawrence Mitchell         maxDofWithArtificial = PetscMax(maxDofWithArtificial, dof);
2568c2e6f3c0SFlorian Wechsung 
2569e047a90bSFlorian Wechsung         /* Now build the mapping that for a dof in a patch WITHOUT dofs that have artificial bcs gives the */
2570e047a90bSFlorian Wechsung         /* the index in the patch with all dofs */
25719566063dSJacob Faibussowitsch         PetscCall(ISGetIndices(patch->gtol, &gtolArray));
257263deea8eSPatrick Farrell 
25739566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(patch->gtolCounts, p, &numPatchDofs));
257447aca4a6SPatrick Farrell         if (numPatchDofs == 0) {
257547aca4a6SPatrick Farrell           patch->dofMappingWithoutToWithArtificial[p - pStart] = NULL;
257647aca4a6SPatrick Farrell           continue;
257747aca4a6SPatrick Farrell         }
257863deea8eSPatrick Farrell 
25799566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(patch->gtolCounts, p, &offset));
25809566063dSJacob Faibussowitsch         PetscCall(ISGetIndices(patch->gtolWithArtificial, &gtolArrayWithArtificial));
25819566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(patch->gtolCountsWithArtificial, p, &numPatchDofsWithArtificial));
25829566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(patch->gtolCountsWithArtificial, p, &offsetWithArtificial));
2583c2e6f3c0SFlorian Wechsung 
25849566063dSJacob Faibussowitsch         PetscCall(PetscMalloc1(numPatchDofs, &patchWithoutArtificialToWithArtificialArray));
2585b0c21b6aSKarl Rupp         for (i = 0; i < numPatchDofsWithArtificial; i++) {
2586e047a90bSFlorian Wechsung           if (gtolArrayWithArtificial[i + offsetWithArtificial] == gtolArray[offset + dofWithoutArtificialCounter]) {
2587c2e6f3c0SFlorian Wechsung             patchWithoutArtificialToWithArtificialArray[dofWithoutArtificialCounter] = i;
2588c2e6f3c0SFlorian Wechsung             dofWithoutArtificialCounter++;
25899371c9d4SSatish Balay             if (dofWithoutArtificialCounter == numPatchDofs) break;
2590c2e6f3c0SFlorian Wechsung           }
2591c2e6f3c0SFlorian Wechsung         }
25929566063dSJacob Faibussowitsch         PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numPatchDofs, patchWithoutArtificialToWithArtificialArray, PETSC_OWN_POINTER, &patch->dofMappingWithoutToWithArtificial[p - pStart]));
25939566063dSJacob Faibussowitsch         PetscCall(ISRestoreIndices(patch->gtol, &gtolArray));
25949566063dSJacob Faibussowitsch         PetscCall(ISRestoreIndices(patch->gtolWithArtificial, &gtolArrayWithArtificial));
2595c2e6f3c0SFlorian Wechsung       }
25960997d788SPatrick Farrell     }
25970997d788SPatrick Farrell     for (p = pStart; p < pEnd; ++p) {
25980904074fSPatrick Farrell       if (isNonlinear) {
25990904074fSPatrick Farrell         const PetscInt *gtolArray, *gtolArrayWithAll = NULL;
26000904074fSPatrick Farrell         PetscInt        numPatchDofs, offset;
26010904074fSPatrick Farrell         PetscInt        numPatchDofsWithAll, offsetWithAll;
26020904074fSPatrick Farrell         PetscInt        dofWithoutAllCounter = 0;
26030904074fSPatrick Farrell         PetscInt       *patchWithoutAllToWithAllArray;
26040904074fSPatrick Farrell 
26050904074fSPatrick Farrell         /* Now build the mapping that for a dof in a patch WITHOUT dofs that have artificial bcs gives the */
26060904074fSPatrick Farrell         /* the index in the patch with all dofs */
26079566063dSJacob Faibussowitsch         PetscCall(ISGetIndices(patch->gtol, &gtolArray));
26080904074fSPatrick Farrell 
26099566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(patch->gtolCounts, p, &numPatchDofs));
261047aca4a6SPatrick Farrell         if (numPatchDofs == 0) {
2611b88cb22dSPatrick Farrell           patch->dofMappingWithoutToWithAll[p - pStart] = NULL;
261247aca4a6SPatrick Farrell           continue;
261347aca4a6SPatrick Farrell         }
26140904074fSPatrick Farrell 
26159566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(patch->gtolCounts, p, &offset));
26169566063dSJacob Faibussowitsch         PetscCall(ISGetIndices(patch->gtolWithAll, &gtolArrayWithAll));
26179566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetDof(patch->gtolCountsWithAll, p, &numPatchDofsWithAll));
26189566063dSJacob Faibussowitsch         PetscCall(PetscSectionGetOffset(patch->gtolCountsWithAll, p, &offsetWithAll));
26190904074fSPatrick Farrell 
26209566063dSJacob Faibussowitsch         PetscCall(PetscMalloc1(numPatchDofs, &patchWithoutAllToWithAllArray));
26210904074fSPatrick Farrell 
26220904074fSPatrick Farrell         for (i = 0; i < numPatchDofsWithAll; i++) {
26230904074fSPatrick Farrell           if (gtolArrayWithAll[i + offsetWithAll] == gtolArray[offset + dofWithoutAllCounter]) {
26240904074fSPatrick Farrell             patchWithoutAllToWithAllArray[dofWithoutAllCounter] = i;
26250904074fSPatrick Farrell             dofWithoutAllCounter++;
26269371c9d4SSatish Balay             if (dofWithoutAllCounter == numPatchDofs) break;
26270904074fSPatrick Farrell           }
26280904074fSPatrick Farrell         }
26299566063dSJacob Faibussowitsch         PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numPatchDofs, patchWithoutAllToWithAllArray, PETSC_OWN_POINTER, &patch->dofMappingWithoutToWithAll[p - pStart]));
26309566063dSJacob Faibussowitsch         PetscCall(ISRestoreIndices(patch->gtol, &gtolArray));
26319566063dSJacob Faibussowitsch         PetscCall(ISRestoreIndices(patch->gtolWithAll, &gtolArrayWithAll));
26320904074fSPatrick Farrell       }
26334bbf5ea8SMatthew G. Knepley     }
263460dd46caSLawrence Mitchell     if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) {
26359566063dSJacob Faibussowitsch       PetscCall(VecCreateSeq(PETSC_COMM_SELF, maxDofWithArtificial, &patch->patchRHSWithArtificial));
26369566063dSJacob Faibussowitsch       PetscCall(VecSetUp(patch->patchRHSWithArtificial));
263760dd46caSLawrence Mitchell     }
26389566063dSJacob Faibussowitsch     PetscCall(VecCreateSeq(PETSC_COMM_SELF, maxDof, &patch->patchRHS));
26399566063dSJacob Faibussowitsch     PetscCall(VecSetUp(patch->patchRHS));
26409566063dSJacob Faibussowitsch     PetscCall(VecCreateSeq(PETSC_COMM_SELF, maxDof, &patch->patchUpdate));
26419566063dSJacob Faibussowitsch     PetscCall(VecSetUp(patch->patchUpdate));
26424bbf5ea8SMatthew G. Knepley     if (patch->save_operators) {
26439566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(patch->npatch, &patch->mat));
264448a46eb9SPierre Jolivet       for (i = 0; i < patch->npatch; ++i) PetscCall(PCPatchCreateMatrix_Private(pc, i, &patch->mat[i], PETSC_FALSE));
26454bbf5ea8SMatthew G. Knepley     }
26469566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(PC_Patch_CreatePatches, pc, 0, 0, 0));
26474bbf5ea8SMatthew G. Knepley 
26484bbf5ea8SMatthew G. Knepley     /* If desired, calculate weights for dof multiplicity */
26494bbf5ea8SMatthew G. Knepley     if (patch->partition_of_unity) {
26503bb0e8f7SKarl Rupp       PetscScalar *input  = NULL;
26513bb0e8f7SKarl Rupp       PetscScalar *output = NULL;
26523bb0e8f7SKarl Rupp       Vec          global;
26533bb0e8f7SKarl Rupp 
26549566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(patch->localRHS, &patch->dof_weights));
265561c4b389SFlorian Wechsung       if (patch->local_composition_type == PC_COMPOSITE_ADDITIVE) {
26564bbf5ea8SMatthew G. Knepley         for (i = 0; i < patch->npatch; ++i) {
26574bbf5ea8SMatthew G. Knepley           PetscInt dof;
26584bbf5ea8SMatthew G. Knepley 
26599566063dSJacob Faibussowitsch           PetscCall(PetscSectionGetDof(patch->gtolCounts, i + pStart, &dof));
26604bbf5ea8SMatthew G. Knepley           if (dof <= 0) continue;
26619566063dSJacob Faibussowitsch           PetscCall(VecSet(patch->patchRHS, 1.0));
26629566063dSJacob Faibussowitsch           PetscCall(PCPatch_ScatterLocal_Private(pc, i + pStart, patch->patchRHS, patch->dof_weights, ADD_VALUES, SCATTER_REVERSE, SCATTER_INTERIOR));
26634bbf5ea8SMatthew G. Knepley         }
2664c2e6f3c0SFlorian Wechsung       } else {
2665e047a90bSFlorian Wechsung         /* multiplicative is actually only locally multiplicative and globally additive. need the pou where the mesh decomposition overlaps */
26669566063dSJacob Faibussowitsch         PetscCall(VecSet(patch->dof_weights, 1.0));
26674bbf5ea8SMatthew G. Knepley       }
2668d132cafaSFlorian Wechsung 
26693ba16761SJacob Faibussowitsch       PetscCall(VecDuplicate(patch->dof_weights, &global));
26703ba16761SJacob Faibussowitsch       PetscCall(VecSet(global, 0.));
2671d132cafaSFlorian Wechsung 
26729566063dSJacob Faibussowitsch       PetscCall(VecGetArray(patch->dof_weights, &input));
26739566063dSJacob Faibussowitsch       PetscCall(VecGetArray(global, &output));
26749566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceBegin(patch->sectionSF, MPIU_SCALAR, input, output, MPI_SUM));
26759566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceEnd(patch->sectionSF, MPIU_SCALAR, input, output, MPI_SUM));
26769566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(patch->dof_weights, &input));
26779566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(global, &output));
2678d132cafaSFlorian Wechsung 
26799566063dSJacob Faibussowitsch       PetscCall(VecReciprocal(global));
2680d132cafaSFlorian Wechsung 
26819566063dSJacob Faibussowitsch       PetscCall(VecGetArray(patch->dof_weights, &output));
26829566063dSJacob Faibussowitsch       PetscCall(VecGetArray(global, &input));
26839566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(patch->sectionSF, MPIU_SCALAR, input, output, MPI_REPLACE));
26849566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(patch->sectionSF, MPIU_SCALAR, input, output, MPI_REPLACE));
26859566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(patch->dof_weights, &output));
26869566063dSJacob Faibussowitsch       PetscCall(VecRestoreArray(global, &input));
26879566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&global));
26884bbf5ea8SMatthew G. Knepley     }
268948a46eb9SPierre Jolivet     if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE && patch->save_operators && !patch->isNonlinear) PetscCall(PetscMalloc1(patch->npatch, &patch->matWithArtificial));
26904bbf5ea8SMatthew G. Knepley   }
26919566063dSJacob Faibussowitsch   PetscCall((*patch->setupsolver)(pc));
26923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26934bbf5ea8SMatthew G. Knepley }
2694dadc69c5SMatthew G. Knepley 
2695d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCApply_PATCH_Linear(PC pc, PetscInt i, Vec x, Vec y)
2696d71ae5a4SJacob Faibussowitsch {
2697dadc69c5SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
2698c73d2cf6SLawrence Mitchell   KSP       ksp;
26999d4fc724SLawrence Mitchell   Mat       op;
27009d4fc724SLawrence Mitchell   PetscInt  m, n;
2701dadc69c5SMatthew G. Knepley 
2702dadc69c5SMatthew G. Knepley   PetscFunctionBegin;
2703c73d2cf6SLawrence Mitchell   if (patch->denseinverse) {
27049566063dSJacob Faibussowitsch     PetscCall((*patch->densesolve)(patch->mat[i], x, y));
27053ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2706c73d2cf6SLawrence Mitchell   }
2707c73d2cf6SLawrence Mitchell   ksp = (KSP)patch->solver[i];
2708dadc69c5SMatthew G. Knepley   if (!patch->save_operators) {
2709dadc69c5SMatthew G. Knepley     Mat mat;
2710dadc69c5SMatthew G. Knepley 
27119566063dSJacob Faibussowitsch     PetscCall(PCPatchCreateMatrix_Private(pc, i, &mat, PETSC_FALSE));
2712dadc69c5SMatthew G. Knepley     /* Populate operator here. */
27139566063dSJacob Faibussowitsch     PetscCall(PCPatchComputeOperator_Internal(pc, NULL, mat, i, PETSC_FALSE));
27149566063dSJacob Faibussowitsch     PetscCall(KSPSetOperators(ksp, mat, mat));
2715dadc69c5SMatthew G. Knepley     /* Drop reference so the KSPSetOperators below will blow it away. */
27169566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&mat));
2717dadc69c5SMatthew G. Knepley   }
27189566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PC_Patch_Solve, pc, 0, 0, 0));
271948a46eb9SPierre Jolivet   if (!ksp->setfromoptionscalled) PetscCall(KSPSetFromOptions(ksp));
27209d4fc724SLawrence Mitchell   /* Disgusting trick to reuse work vectors */
27219566063dSJacob Faibussowitsch   PetscCall(KSPGetOperators(ksp, &op, NULL));
27229566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(op, &m, &n));
27239d4fc724SLawrence Mitchell   x->map->n = m;
27249d4fc724SLawrence Mitchell   y->map->n = n;
27259d4fc724SLawrence Mitchell   x->map->N = m;
27269d4fc724SLawrence Mitchell   y->map->N = n;
27279566063dSJacob Faibussowitsch   PetscCall(KSPSolve(ksp, x, y));
27289566063dSJacob Faibussowitsch   PetscCall(KSPCheckSolve(ksp, pc, y));
27299566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PC_Patch_Solve, pc, 0, 0, 0));
2730dadc69c5SMatthew G. Knepley   if (!patch->save_operators) {
2731dadc69c5SMatthew G. Knepley     PC pc;
27329566063dSJacob Faibussowitsch     PetscCall(KSPSetOperators(ksp, NULL, NULL));
27339566063dSJacob Faibussowitsch     PetscCall(KSPGetPC(ksp, &pc));
2734dadc69c5SMatthew G. Knepley     /* Destroy PC context too, otherwise the factored matrix hangs around. */
27359566063dSJacob Faibussowitsch     PetscCall(PCReset(pc));
27364bbf5ea8SMatthew G. Knepley   }
27373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27384bbf5ea8SMatthew G. Knepley }
27394bbf5ea8SMatthew G. Knepley 
2740d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCUpdateMultiplicative_PATCH_Linear(PC pc, PetscInt i, PetscInt pStart)
2741d71ae5a4SJacob Faibussowitsch {
27426c9c532dSPatrick Farrell   PC_PATCH *patch = (PC_PATCH *)pc->data;
27436c9c532dSPatrick Farrell   Mat       multMat;
27449d4fc724SLawrence Mitchell   PetscInt  n, m;
27456c9c532dSPatrick Farrell 
27464d04e9f1SPatrick Farrell   PetscFunctionBegin;
27476c9c532dSPatrick Farrell   if (patch->save_operators) {
27486c9c532dSPatrick Farrell     multMat = patch->matWithArtificial[i];
27496c9c532dSPatrick Farrell   } else {
27506c9c532dSPatrick Farrell     /*Very inefficient, hopefully we can just assemble the rectangular matrix in the first place.*/
27516c9c532dSPatrick Farrell     Mat      matSquare;
27526c9c532dSPatrick Farrell     PetscInt dof;
27536c9c532dSPatrick Farrell     IS       rowis;
27549566063dSJacob Faibussowitsch     PetscCall(PCPatchCreateMatrix_Private(pc, i, &matSquare, PETSC_TRUE));
27559566063dSJacob Faibussowitsch     PetscCall(PCPatchComputeOperator_Internal(pc, NULL, matSquare, i, PETSC_TRUE));
27569566063dSJacob Faibussowitsch     PetscCall(MatGetSize(matSquare, &dof, NULL));
27579566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, dof, 0, 1, &rowis));
27589566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(matSquare, rowis, patch->dofMappingWithoutToWithArtificial[i], MAT_INITIAL_MATRIX, &multMat));
27599566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&matSquare));
27609566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rowis));
27616c9c532dSPatrick Farrell   }
27629d4fc724SLawrence Mitchell   /* Disgusting trick to reuse work vectors */
27639566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(multMat, &m, &n));
27649d4fc724SLawrence Mitchell   patch->patchUpdate->map->n            = n;
27659d4fc724SLawrence Mitchell   patch->patchRHSWithArtificial->map->n = m;
27669d4fc724SLawrence Mitchell   patch->patchUpdate->map->N            = n;
27679d4fc724SLawrence Mitchell   patch->patchRHSWithArtificial->map->N = m;
27689566063dSJacob Faibussowitsch   PetscCall(MatMult(multMat, patch->patchUpdate, patch->patchRHSWithArtificial));
27699566063dSJacob Faibussowitsch   PetscCall(VecScale(patch->patchRHSWithArtificial, -1.0));
27709566063dSJacob Faibussowitsch   PetscCall(PCPatch_ScatterLocal_Private(pc, i + pStart, patch->patchRHSWithArtificial, patch->localRHS, ADD_VALUES, SCATTER_REVERSE, SCATTER_WITHARTIFICIAL));
277148a46eb9SPierre Jolivet   if (!patch->save_operators) PetscCall(MatDestroy(&multMat));
27723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27736c9c532dSPatrick Farrell }
27746c9c532dSPatrick Farrell 
2775d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCApply_PATCH(PC pc, Vec x, Vec y)
2776d71ae5a4SJacob Faibussowitsch {
27774bbf5ea8SMatthew G. Knepley   PC_PATCH          *patch        = (PC_PATCH *)pc->data;
27781202d238SPatrick Farrell   const PetscScalar *globalRHS    = NULL;
27791202d238SPatrick Farrell   PetscScalar       *localRHS     = NULL;
27801202d238SPatrick Farrell   PetscScalar       *globalUpdate = NULL;
27814bbf5ea8SMatthew G. Knepley   const PetscInt    *bcNodes      = NULL;
27824bbf5ea8SMatthew G. Knepley   PetscInt           nsweep       = patch->symmetrise_sweep ? 2 : 1;
27834bbf5ea8SMatthew G. Knepley   PetscInt           start[2]     = {0, 0};
27844bbf5ea8SMatthew G. Knepley   PetscInt           end[2]       = {-1, -1};
27854bbf5ea8SMatthew G. Knepley   const PetscInt     inc[2]       = {1, -1};
27861202d238SPatrick Farrell   const PetscScalar *localUpdate;
27874bbf5ea8SMatthew G. Knepley   const PetscInt    *iterationSet;
27884bbf5ea8SMatthew G. Knepley   PetscInt           pStart, numBcs, n, sweep, bc, j;
27894bbf5ea8SMatthew G. Knepley 
27904bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
27919566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PC_Patch_Apply, pc, 0, 0, 0));
2792648c30bcSBarry Smith   PetscCall(PetscOptionsPushCreateViewerOff(PETSC_TRUE));
279392d50984SMatthew G. Knepley   /* start, end, inc have 2 entries to manage a second backward sweep if we symmetrize */
27944bbf5ea8SMatthew G. Knepley   end[0]   = patch->npatch;
27954bbf5ea8SMatthew G. Knepley   start[1] = patch->npatch - 1;
27964bbf5ea8SMatthew G. Knepley   if (patch->user_patches) {
27979566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(patch->iterationSet, &end[0]));
27984bbf5ea8SMatthew G. Knepley     start[1] = end[0] - 1;
27999566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(patch->iterationSet, &iterationSet));
28004bbf5ea8SMatthew G. Knepley   }
28014bbf5ea8SMatthew G. Knepley   /* Scatter from global space into overlapped local spaces */
28029566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(x, &globalRHS));
28039566063dSJacob Faibussowitsch   PetscCall(VecGetArray(patch->localRHS, &localRHS));
28049566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(patch->sectionSF, MPIU_SCALAR, globalRHS, localRHS, MPI_REPLACE));
28059566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(patch->sectionSF, MPIU_SCALAR, globalRHS, localRHS, MPI_REPLACE));
28069566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(x, &globalRHS));
28079566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(patch->localRHS, &localRHS));
28084bbf5ea8SMatthew G. Knepley 
28099566063dSJacob Faibussowitsch   PetscCall(VecSet(patch->localUpdate, 0.0));
28109566063dSJacob Faibussowitsch   PetscCall(PetscSectionGetChart(patch->gtolCounts, &pStart, NULL));
28119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PC_Patch_Solve, pc, 0, 0, 0));
28124bbf5ea8SMatthew G. Knepley   for (sweep = 0; sweep < nsweep; sweep++) {
28134bbf5ea8SMatthew G. Knepley     for (j = start[sweep]; j * inc[sweep] < end[sweep] * inc[sweep]; j += inc[sweep]) {
28144bbf5ea8SMatthew G. Knepley       PetscInt i = patch->user_patches ? iterationSet[j] : j;
28154bbf5ea8SMatthew G. Knepley       PetscInt start, len;
28164bbf5ea8SMatthew G. Knepley 
28179566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetDof(patch->gtolCounts, i + pStart, &len));
28189566063dSJacob Faibussowitsch       PetscCall(PetscSectionGetOffset(patch->gtolCounts, i + pStart, &start));
28194bbf5ea8SMatthew G. Knepley       /* TODO: Squash out these guys in the setup as well. */
28204bbf5ea8SMatthew G. Knepley       if (len <= 0) continue;
28214bbf5ea8SMatthew G. Knepley       /* TODO: Do we need different scatters for X and Y? */
28229566063dSJacob Faibussowitsch       PetscCall(PCPatch_ScatterLocal_Private(pc, i + pStart, patch->localRHS, patch->patchRHS, INSERT_VALUES, SCATTER_FORWARD, SCATTER_INTERIOR));
28239566063dSJacob Faibussowitsch       PetscCall((*patch->applysolver)(pc, i, patch->patchRHS, patch->patchUpdate));
28249566063dSJacob Faibussowitsch       PetscCall(PCPatch_ScatterLocal_Private(pc, i + pStart, patch->patchUpdate, patch->localUpdate, ADD_VALUES, SCATTER_REVERSE, SCATTER_INTERIOR));
282548a46eb9SPierre Jolivet       if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) PetscCall((*patch->updatemultiplicative)(pc, i, pStart));
28264bbf5ea8SMatthew G. Knepley     }
28274bbf5ea8SMatthew G. Knepley   }
28289566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PC_Patch_Solve, pc, 0, 0, 0));
28299566063dSJacob Faibussowitsch   if (patch->user_patches) PetscCall(ISRestoreIndices(patch->iterationSet, &iterationSet));
28304bbf5ea8SMatthew G. Knepley   /* XXX: should we do this on the global vector? */
28311baa6e33SBarry Smith   if (patch->partition_of_unity) PetscCall(VecPointwiseMult(patch->localUpdate, patch->localUpdate, patch->dof_weights));
28321202d238SPatrick Farrell   /* Now patch->localUpdate contains the solution of the patch solves, so we need to combine them all. */
28339566063dSJacob Faibussowitsch   PetscCall(VecSet(y, 0.0));
28349566063dSJacob Faibussowitsch   PetscCall(VecGetArray(y, &globalUpdate));
28359566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(patch->localUpdate, &localUpdate));
28369566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(patch->sectionSF, MPIU_SCALAR, localUpdate, globalUpdate, MPI_SUM));
28379566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(patch->sectionSF, MPIU_SCALAR, localUpdate, globalUpdate, MPI_SUM));
28389566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(patch->localUpdate, &localUpdate));
28394bbf5ea8SMatthew G. Knepley 
28404bbf5ea8SMatthew G. Knepley   /* Now we need to send the global BC values through */
28419566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(x, &globalRHS));
28429566063dSJacob Faibussowitsch   PetscCall(ISGetSize(patch->globalBcNodes, &numBcs));
28439566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(patch->globalBcNodes, &bcNodes));
28449566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(x, &n));
28454bbf5ea8SMatthew G. Knepley   for (bc = 0; bc < numBcs; ++bc) {
28464bbf5ea8SMatthew G. Knepley     const PetscInt idx = bcNodes[bc];
28471202d238SPatrick Farrell     if (idx < n) globalUpdate[idx] = globalRHS[idx];
28484bbf5ea8SMatthew G. Knepley   }
28494bbf5ea8SMatthew G. Knepley 
28509566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(patch->globalBcNodes, &bcNodes));
28519566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(x, &globalRHS));
28529566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(y, &globalUpdate));
28534bbf5ea8SMatthew G. Knepley 
2854648c30bcSBarry Smith   PetscCall(PetscOptionsPopCreateViewerOff());
28559566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PC_Patch_Apply, pc, 0, 0, 0));
28563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28574bbf5ea8SMatthew G. Knepley }
28584bbf5ea8SMatthew G. Knepley 
2859d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCReset_PATCH_Linear(PC pc)
2860d71ae5a4SJacob Faibussowitsch {
2861dadc69c5SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
2862dadc69c5SMatthew G. Knepley   PetscInt  i;
2863dadc69c5SMatthew G. Knepley 
2864dadc69c5SMatthew G. Knepley   PetscFunctionBegin;
2865dadc69c5SMatthew G. Knepley   if (patch->solver) {
28669566063dSJacob Faibussowitsch     for (i = 0; i < patch->npatch; ++i) PetscCall(KSPReset((KSP)patch->solver[i]));
2867dadc69c5SMatthew G. Knepley   }
28683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2869dadc69c5SMatthew G. Knepley }
2870dadc69c5SMatthew G. Knepley 
2871d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCReset_PATCH(PC pc)
2872d71ae5a4SJacob Faibussowitsch {
28734bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
28744bbf5ea8SMatthew G. Knepley   PetscInt  i;
28754bbf5ea8SMatthew G. Knepley 
28764bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
28779566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&patch->sectionSF));
28789566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&patch->cellCounts));
28799566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&patch->pointCounts));
28809566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&patch->cellNumbering));
28819566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&patch->gtolCounts));
28829566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->gtol));
28839566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->cells));
28849566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->points));
28859566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->dofs));
28869566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->offs));
28879566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&patch->patchSection));
28889566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->ghostBcNodes));
28899566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->globalBcNodes));
28909566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&patch->gtolCountsWithArtificial));
28919566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->gtolWithArtificial));
28929566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->dofsWithArtificial));
28939566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->offsWithArtificial));
28949566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&patch->gtolCountsWithAll));
28959566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->gtolWithAll));
28969566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->dofsWithAll));
28979566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->offsWithAll));
28989566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&patch->cellMats));
28999566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&patch->intFacetMats));
29009566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->allCells));
29019566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->intFacets));
29029566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->extFacets));
29039566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->intFacetsToPatchCell));
29049566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&patch->intFacetCounts));
29059566063dSJacob Faibussowitsch   PetscCall(PetscSectionDestroy(&patch->extFacetCounts));
29064bbf5ea8SMatthew G. Knepley 
29079371c9d4SSatish Balay   if (patch->dofSection)
29089371c9d4SSatish Balay     for (i = 0; i < patch->nsubspaces; i++) PetscCall(PetscSectionDestroy(&patch->dofSection[i]));
29099566063dSJacob Faibussowitsch   PetscCall(PetscFree(patch->dofSection));
29109566063dSJacob Faibussowitsch   PetscCall(PetscFree(patch->bs));
29119566063dSJacob Faibussowitsch   PetscCall(PetscFree(patch->nodesPerCell));
29129371c9d4SSatish Balay   if (patch->cellNodeMap)
29139371c9d4SSatish Balay     for (i = 0; i < patch->nsubspaces; i++) PetscCall(PetscFree(patch->cellNodeMap[i]));
29149566063dSJacob Faibussowitsch   PetscCall(PetscFree(patch->cellNodeMap));
29159566063dSJacob Faibussowitsch   PetscCall(PetscFree(patch->subspaceOffsets));
29164bbf5ea8SMatthew G. Knepley 
29179566063dSJacob Faibussowitsch   PetscCall((*patch->resetsolver)(pc));
29184bbf5ea8SMatthew G. Knepley 
291948a46eb9SPierre Jolivet   if (patch->subspaces_to_exclude) PetscCall(PetscHSetIDestroy(&patch->subspaces_to_exclude));
2920e4c66b91SPatrick Farrell 
29219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&patch->localRHS));
29229566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&patch->localUpdate));
29239566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&patch->patchRHS));
29249566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&patch->patchUpdate));
29259566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&patch->dof_weights));
29264bbf5ea8SMatthew G. Knepley   if (patch->patch_dof_weights) {
29279566063dSJacob Faibussowitsch     for (i = 0; i < patch->npatch; ++i) PetscCall(VecDestroy(&patch->patch_dof_weights[i]));
29289566063dSJacob Faibussowitsch     PetscCall(PetscFree(patch->patch_dof_weights));
29294bbf5ea8SMatthew G. Knepley   }
29304bbf5ea8SMatthew G. Knepley   if (patch->mat) {
29319566063dSJacob Faibussowitsch     for (i = 0; i < patch->npatch; ++i) PetscCall(MatDestroy(&patch->mat[i]));
29329566063dSJacob Faibussowitsch     PetscCall(PetscFree(patch->mat));
29335f824522SMatthew G. Knepley   }
29340997d788SPatrick Farrell   if (patch->matWithArtificial && !patch->isNonlinear) {
29359566063dSJacob Faibussowitsch     for (i = 0; i < patch->npatch; ++i) PetscCall(MatDestroy(&patch->matWithArtificial[i]));
29369566063dSJacob Faibussowitsch     PetscCall(PetscFree(patch->matWithArtificial));
293711ac8bb0SFlorian Wechsung   }
29389566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&patch->patchRHSWithArtificial));
293996b79ebeSFlorian Wechsung   if (patch->dofMappingWithoutToWithArtificial) {
29409566063dSJacob Faibussowitsch     for (i = 0; i < patch->npatch; ++i) PetscCall(ISDestroy(&patch->dofMappingWithoutToWithArtificial[i]));
29419566063dSJacob Faibussowitsch     PetscCall(PetscFree(patch->dofMappingWithoutToWithArtificial));
294296b79ebeSFlorian Wechsung   }
29430904074fSPatrick Farrell   if (patch->dofMappingWithoutToWithAll) {
29449566063dSJacob Faibussowitsch     for (i = 0; i < patch->npatch; ++i) PetscCall(ISDestroy(&patch->dofMappingWithoutToWithAll[i]));
29459566063dSJacob Faibussowitsch     PetscCall(PetscFree(patch->dofMappingWithoutToWithAll));
29460904074fSPatrick Farrell   }
29479566063dSJacob Faibussowitsch   PetscCall(PetscFree(patch->sub_mat_type));
29485f824522SMatthew G. Knepley   if (patch->userIS) {
29499566063dSJacob Faibussowitsch     for (i = 0; i < patch->npatch; ++i) PetscCall(ISDestroy(&patch->userIS[i]));
29509566063dSJacob Faibussowitsch     PetscCall(PetscFree(patch->userIS));
29515f824522SMatthew G. Knepley   }
29529566063dSJacob Faibussowitsch   PetscCall(PetscFree(patch->precomputedTensorLocations));
29539566063dSJacob Faibussowitsch   PetscCall(PetscFree(patch->precomputedIntFacetTensorLocations));
2954f98464cbSLawrence Mitchell 
29550a545947SLisandro Dalcin   patch->bs          = NULL;
29564bbf5ea8SMatthew G. Knepley   patch->cellNodeMap = NULL;
29577974b488SMatthew G. Knepley   patch->nsubspaces  = 0;
29589566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&patch->iterationSet));
29595f824522SMatthew G. Knepley 
2960648c30bcSBarry Smith   PetscCall(PetscViewerDestroy(&patch->viewerCells));
2961648c30bcSBarry Smith   PetscCall(PetscViewerDestroy(&patch->viewerIntFacets));
2962648c30bcSBarry Smith   PetscCall(PetscViewerDestroy(&patch->viewerPoints));
2963648c30bcSBarry Smith   PetscCall(PetscViewerDestroy(&patch->viewerSection));
2964648c30bcSBarry Smith   PetscCall(PetscViewerDestroy(&patch->viewerMatrix));
29653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29664bbf5ea8SMatthew G. Knepley }
29674bbf5ea8SMatthew G. Knepley 
2968d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCDestroy_PATCH_Linear(PC pc)
2969d71ae5a4SJacob Faibussowitsch {
29704bbf5ea8SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
29714bbf5ea8SMatthew G. Knepley   PetscInt  i;
29724bbf5ea8SMatthew G. Knepley 
29734bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
2974dadc69c5SMatthew G. Knepley   if (patch->solver) {
29759566063dSJacob Faibussowitsch     for (i = 0; i < patch->npatch; ++i) PetscCall(KSPDestroy((KSP *)&patch->solver[i]));
29769566063dSJacob Faibussowitsch     PetscCall(PetscFree(patch->solver));
29774bbf5ea8SMatthew G. Knepley   }
29783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2979dadc69c5SMatthew G. Knepley }
2980dadc69c5SMatthew G. Knepley 
2981d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCDestroy_PATCH(PC pc)
2982d71ae5a4SJacob Faibussowitsch {
2983dadc69c5SMatthew G. Knepley   PC_PATCH *patch = (PC_PATCH *)pc->data;
2984dadc69c5SMatthew G. Knepley 
2985dadc69c5SMatthew G. Knepley   PetscFunctionBegin;
29869566063dSJacob Faibussowitsch   PetscCall(PCReset_PATCH(pc));
29879566063dSJacob Faibussowitsch   PetscCall((*patch->destroysolver)(pc));
29889566063dSJacob Faibussowitsch   PetscCall(PetscFree(pc->data));
29893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
29904bbf5ea8SMatthew G. Knepley }
29914bbf5ea8SMatthew G. Knepley 
2992d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCSetFromOptions_PATCH(PC pc, PetscOptionItems *PetscOptionsObject)
2993d71ae5a4SJacob Faibussowitsch {
29944bbf5ea8SMatthew G. Knepley   PC_PATCH            *patch                 = (PC_PATCH *)pc->data;
29954bbf5ea8SMatthew G. Knepley   PCPatchConstructType patchConstructionType = PC_PATCH_STAR;
29965f824522SMatthew G. Knepley   char                 sub_mat_type[PETSC_MAX_PATH_LEN];
299710534d48SPatrick Farrell   char                 option[PETSC_MAX_PATH_LEN];
29985f824522SMatthew G. Knepley   const char          *prefix;
29994bbf5ea8SMatthew G. Knepley   PetscBool            flg, dimflg, codimflg;
30005f824522SMatthew G. Knepley   MPI_Comm             comm;
3001a48c39c8SPatrick Farrell   PetscInt            *ifields, nfields, k;
300261c4b389SFlorian Wechsung   PCCompositeType      loctype = PC_COMPOSITE_ADDITIVE;
30034bbf5ea8SMatthew G. Knepley 
30044bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
30059566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)pc, &comm));
30069566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetOptionsPrefix((PetscObject)pc, &prefix));
3007d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "Patch solver options");
300810534d48SPatrick Farrell 
30099566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_save_operators", patch->classname));
30109566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool(option, "Store all patch operators for lifetime of object?", "PCPatchSetSaveOperators", patch->save_operators, &patch->save_operators, &flg));
301110534d48SPatrick Farrell 
30129566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_precompute_element_tensors", patch->classname));
30139566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool(option, "Compute each element tensor only once?", "PCPatchSetPrecomputeElementTensors", patch->precomputeElementTensors, &patch->precomputeElementTensors, &flg));
30149566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_partition_of_unity", patch->classname));
30159566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool(option, "Weight contributions by dof multiplicity?", "PCPatchSetPartitionOfUnity", patch->partition_of_unity, &patch->partition_of_unity, &flg));
301610534d48SPatrick Farrell 
30179566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_local_type", patch->classname));
30189566063dSJacob Faibussowitsch   PetscCall(PetscOptionsEnum(option, "Type of local solver composition (additive or multiplicative)", "PCPatchSetLocalComposition", PCCompositeTypes, (PetscEnum)loctype, (PetscEnum *)&loctype, &flg));
30199566063dSJacob Faibussowitsch   if (flg) PetscCall(PCPatchSetLocalComposition(pc, loctype));
30209566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_dense_inverse", patch->classname));
30219566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool(option, "Compute inverses of patch matrices and apply directly? Ignores KSP/PC settings on patch.", "PCPatchSetDenseInverse", patch->denseinverse, &patch->denseinverse, &flg));
30229566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_construct_dim", patch->classname));
30239566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt(option, "What dimension of mesh point to construct patches by? (0 = vertices)", "PCPATCH", patch->dim, &patch->dim, &dimflg));
30249566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_construct_codim", patch->classname));
30259566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt(option, "What co-dimension of mesh point to construct patches by? (0 = cells)", "PCPATCH", patch->codim, &patch->codim, &codimflg));
302608401ef6SPierre Jolivet   PetscCheck(!dimflg || !codimflg, comm, PETSC_ERR_ARG_WRONG, "Can only set one of dimension or co-dimension");
302710534d48SPatrick Farrell 
30289566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_construct_type", patch->classname));
30299566063dSJacob Faibussowitsch   PetscCall(PetscOptionsEnum(option, "How should the patches be constructed?", "PCPatchSetConstructType", PCPatchConstructTypes, (PetscEnum)patchConstructionType, (PetscEnum *)&patchConstructionType, &flg));
30309566063dSJacob Faibussowitsch   if (flg) PetscCall(PCPatchSetConstructType(pc, patchConstructionType, NULL, NULL));
303110534d48SPatrick Farrell 
30329566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_vanka_dim", patch->classname));
30339566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt(option, "Topological dimension of entities for Vanka to ignore", "PCPATCH", patch->vankadim, &patch->vankadim, &flg));
303410534d48SPatrick Farrell 
30359566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_ignore_dim", patch->classname));
30369566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt(option, "Topological dimension of entities for completion to ignore", "PCPATCH", patch->ignoredim, &patch->ignoredim, &flg));
303710534d48SPatrick Farrell 
30389566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_pardecomp_overlap", patch->classname));
30399566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt(option, "What overlap should we use in construct type pardecomp?", "PCPATCH", patch->pardecomp_overlap, &patch->pardecomp_overlap, &flg));
3040b525f888SPatrick Farrell 
30419566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_sub_mat_type", patch->classname));
30429566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList(option, "Matrix type for patch solves", "PCPatchSetSubMatType", MatList, NULL, sub_mat_type, PETSC_MAX_PATH_LEN, &flg));
30439566063dSJacob Faibussowitsch   if (flg) PetscCall(PCPatchSetSubMatType(pc, sub_mat_type));
304410534d48SPatrick Farrell 
30459566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_symmetrise_sweep", patch->classname));
30469566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool(option, "Go start->end, end->start?", "PCPATCH", patch->symmetrise_sweep, &patch->symmetrise_sweep, &flg));
3047e4c66b91SPatrick Farrell 
3048a48c39c8SPatrick Farrell   /* If the user has set the number of subspaces, use that for the buffer size,
3049a48c39c8SPatrick Farrell    otherwise use a large number */
3050a48c39c8SPatrick Farrell   if (patch->nsubspaces <= 0) {
3051a48c39c8SPatrick Farrell     nfields = 128;
3052a48c39c8SPatrick Farrell   } else {
3053a48c39c8SPatrick Farrell     nfields = patch->nsubspaces;
3054a48c39c8SPatrick Farrell   }
30559566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nfields, &ifields));
30569566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_exclude_subspaces", patch->classname));
30579566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetIntArray(((PetscObject)pc)->options, ((PetscObject)pc)->prefix, option, ifields, &nfields, &flg));
305808401ef6SPierre Jolivet   PetscCheck(!flg || !(patchConstructionType == PC_PATCH_USER), comm, PETSC_ERR_ARG_INCOMP, "We cannot support excluding a subspace with user patches because we do not index patches with a mesh point");
3059e4c66b91SPatrick Farrell   if (flg) {
30609566063dSJacob Faibussowitsch     PetscCall(PetscHSetIClear(patch->subspaces_to_exclude));
306148a46eb9SPierre Jolivet     for (k = 0; k < nfields; k++) PetscCall(PetscHSetIAdd(patch->subspaces_to_exclude, ifields[k]));
3062e4c66b91SPatrick Farrell   }
30639566063dSJacob Faibussowitsch   PetscCall(PetscFree(ifields));
30645f824522SMatthew G. Knepley 
30659566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_patches_view", patch->classname));
30669566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool(option, "Print out information during patch construction", "PCPATCH", patch->viewPatches, &patch->viewPatches, &flg));
30679566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_cells_view", patch->classname));
3068648c30bcSBarry Smith   PetscCall(PetscOptionsCreateViewer(comm, ((PetscObject)pc)->options, prefix, option, &patch->viewerCells, &patch->formatCells, &patch->viewCells));
30699566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_interior_facets_view", patch->classname));
3070648c30bcSBarry Smith   PetscCall(PetscOptionsCreateViewer(comm, ((PetscObject)pc)->options, prefix, option, &patch->viewerIntFacets, &patch->formatIntFacets, &patch->viewIntFacets));
30719566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_exterior_facets_view", patch->classname));
3072648c30bcSBarry Smith   PetscCall(PetscOptionsCreateViewer(comm, ((PetscObject)pc)->options, prefix, option, &patch->viewerExtFacets, &patch->formatExtFacets, &patch->viewExtFacets));
30739566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_points_view", patch->classname));
3074648c30bcSBarry Smith   PetscCall(PetscOptionsCreateViewer(comm, ((PetscObject)pc)->options, prefix, option, &patch->viewerPoints, &patch->formatPoints, &patch->viewPoints));
30759566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_section_view", patch->classname));
3076648c30bcSBarry Smith   PetscCall(PetscOptionsCreateViewer(comm, ((PetscObject)pc)->options, prefix, option, &patch->viewerSection, &patch->formatSection, &patch->viewSection));
30779566063dSJacob Faibussowitsch   PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_mat_view", patch->classname));
3078648c30bcSBarry Smith   PetscCall(PetscOptionsCreateViewer(comm, ((PetscObject)pc)->options, prefix, option, &patch->viewerMatrix, &patch->formatMatrix, &patch->viewMatrix));
3079d0609cedSBarry Smith   PetscOptionsHeadEnd();
30805f824522SMatthew G. Knepley   patch->optionsSet = PETSC_TRUE;
30813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30824bbf5ea8SMatthew G. Knepley }
30834bbf5ea8SMatthew G. Knepley 
3084d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCSetUpOnBlocks_PATCH(PC pc)
3085d71ae5a4SJacob Faibussowitsch {
30864bbf5ea8SMatthew G. Knepley   PC_PATCH          *patch = (PC_PATCH *)pc->data;
30874bbf5ea8SMatthew G. Knepley   KSPConvergedReason reason;
30884bbf5ea8SMatthew G. Knepley   PetscInt           i;
30894bbf5ea8SMatthew G. Knepley 
30904bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
3091a1eac568SLawrence Mitchell   if (!patch->save_operators) {
3092a1eac568SLawrence Mitchell     /* Can't do this here because the sub KSPs don't have an operator attached yet. */
30933ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
3094a1eac568SLawrence Mitchell   }
3095c73d2cf6SLawrence Mitchell   if (patch->denseinverse) {
3096c73d2cf6SLawrence Mitchell     /* No solvers */
30973ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
3098c73d2cf6SLawrence Mitchell   }
30994bbf5ea8SMatthew G. Knepley   for (i = 0; i < patch->npatch; ++i) {
310048a46eb9SPierre Jolivet     if (!((KSP)patch->solver[i])->setfromoptionscalled) PetscCall(KSPSetFromOptions((KSP)patch->solver[i]));
31019566063dSJacob Faibussowitsch     PetscCall(KSPSetUp((KSP)patch->solver[i]));
31029566063dSJacob Faibussowitsch     PetscCall(KSPGetConvergedReason((KSP)patch->solver[i], &reason));
3103c0decd05SBarry Smith     if (reason == KSP_DIVERGED_PC_FAILED) pc->failedreason = PC_SUBPC_ERROR;
31044bbf5ea8SMatthew G. Knepley   }
31053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31064bbf5ea8SMatthew G. Knepley }
31074bbf5ea8SMatthew G. Knepley 
3108d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCView_PATCH(PC pc, PetscViewer viewer)
3109d71ae5a4SJacob Faibussowitsch {
31104bbf5ea8SMatthew G. Knepley   PC_PATCH   *patch = (PC_PATCH *)pc->data;
31114bbf5ea8SMatthew G. Knepley   PetscViewer sviewer;
31124bbf5ea8SMatthew G. Knepley   PetscBool   isascii;
31134bbf5ea8SMatthew G. Knepley   PetscMPIInt rank;
31144bbf5ea8SMatthew G. Knepley 
31154bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
31164bbf5ea8SMatthew G. Knepley   /* TODO Redo tabbing with set tbas in new style */
31179566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
31183ba16761SJacob Faibussowitsch   if (!isascii) PetscFunctionReturn(PETSC_SUCCESS);
31199566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)pc), &rank));
31209566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPushTab(viewer));
312163a3b9bcSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPrintf(viewer, "Subspace Correction preconditioner with %" PetscInt_FMT " patches\n", patch->npatch));
312261c4b389SFlorian Wechsung   if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) {
31239566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "Schwarz type: multiplicative\n"));
3124e047a90bSFlorian Wechsung   } else {
31259566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "Schwarz type: additive\n"));
3126c2e6f3c0SFlorian Wechsung   }
31279566063dSJacob Faibussowitsch   if (patch->partition_of_unity) PetscCall(PetscViewerASCIIPrintf(viewer, "Weighting by partition of unity\n"));
31289566063dSJacob Faibussowitsch   else PetscCall(PetscViewerASCIIPrintf(viewer, "Not weighting by partition of unity\n"));
31299566063dSJacob Faibussowitsch   if (patch->symmetrise_sweep) PetscCall(PetscViewerASCIIPrintf(viewer, "Symmetrising sweep (start->end, then end->start)\n"));
31309566063dSJacob Faibussowitsch   else PetscCall(PetscViewerASCIIPrintf(viewer, "Not symmetrising sweep\n"));
31319566063dSJacob Faibussowitsch   if (!patch->precomputeElementTensors) PetscCall(PetscViewerASCIIPrintf(viewer, "Not precomputing element tensors (overlapping cells rebuilt in every patch assembly)\n"));
31329566063dSJacob Faibussowitsch   else PetscCall(PetscViewerASCIIPrintf(viewer, "Precomputing element tensors (each cell assembled only once)\n"));
31339566063dSJacob Faibussowitsch   if (!patch->save_operators) PetscCall(PetscViewerASCIIPrintf(viewer, "Not saving patch operators (rebuilt every PCApply)\n"));
31349566063dSJacob Faibussowitsch   else PetscCall(PetscViewerASCIIPrintf(viewer, "Saving patch operators (rebuilt every PCSetUp)\n"));
31359566063dSJacob Faibussowitsch   if (patch->patchconstructop == PCPatchConstruct_Star) PetscCall(PetscViewerASCIIPrintf(viewer, "Patch construction operator: star\n"));
31369566063dSJacob Faibussowitsch   else if (patch->patchconstructop == PCPatchConstruct_Vanka) PetscCall(PetscViewerASCIIPrintf(viewer, "Patch construction operator: Vanka\n"));
31379566063dSJacob Faibussowitsch   else if (patch->patchconstructop == PCPatchConstruct_User) PetscCall(PetscViewerASCIIPrintf(viewer, "Patch construction operator: user-specified\n"));
31389566063dSJacob Faibussowitsch   else PetscCall(PetscViewerASCIIPrintf(viewer, "Patch construction operator: unknown\n"));
31395d30859aSPatrick Farrell 
3140c73d2cf6SLawrence Mitchell   if (patch->denseinverse) {
31419566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer, "Explicitly forming dense inverse and applying patch solver via MatMult.\n"));
3142c73d2cf6SLawrence Mitchell   } else {
31435d30859aSPatrick Farrell     if (patch->isNonlinear) {
31449566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "SNES on patches (all same):\n"));
31455d30859aSPatrick Farrell     } else {
31469566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "KSP on patches (all same):\n"));
31475d30859aSPatrick Farrell     }
3148dadc69c5SMatthew G. Knepley     if (patch->solver) {
31499566063dSJacob Faibussowitsch       PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
3150dd400576SPatrick Sanan       if (rank == 0) {
31519566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPushTab(sviewer));
31529566063dSJacob Faibussowitsch         PetscCall(PetscObjectView(patch->solver[0], sviewer));
31539566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPopTab(sviewer));
31544bbf5ea8SMatthew G. Knepley       }
31559566063dSJacob Faibussowitsch       PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
31564bbf5ea8SMatthew G. Knepley     } else {
31579566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushTab(viewer));
31589566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Solver not yet set.\n"));
31599566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopTab(viewer));
31604bbf5ea8SMatthew G. Knepley     }
3161c73d2cf6SLawrence Mitchell   }
31629566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIPopTab(viewer));
31633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31644bbf5ea8SMatthew G. Knepley }
31654bbf5ea8SMatthew G. Knepley 
3166e5893cccSMatthew G. Knepley /*MC
3167f1580f4eSBarry Smith    PCPATCH - A `PC` object that encapsulates flexible definition of blocks for overlapping and non-overlapping
316898ed095eSMatthew G. Knepley    small block additive preconditioners. Block definition is based on topology from
3169f1580f4eSBarry Smith    a `DM` and equation numbering from a `PetscSection`.
3170e5893cccSMatthew G. Knepley 
3171e5893cccSMatthew G. Knepley    Options Database Keys:
3172e5893cccSMatthew G. Knepley + -pc_patch_cells_view   - Views the process local cell numbers for each patch
3173e5893cccSMatthew G. Knepley . -pc_patch_points_view  - Views the process local mesh point numbers for each patch
3174e5893cccSMatthew G. Knepley . -pc_patch_g2l_view     - Views the map between global dofs and patch local dofs for each patch
3175e5893cccSMatthew G. Knepley . -pc_patch_patches_view - Views the global dofs associated with each patch and its boundary
3176e5893cccSMatthew G. Knepley - -pc_patch_sub_mat_view - Views the matrix associated with each patch
3177e5893cccSMatthew G. Knepley 
3178e5893cccSMatthew G. Knepley    Level: intermediate
3179e5893cccSMatthew G. Knepley 
3180562efe2eSBarry Smith .seealso: [](ch_ksp), `PCType`, `PCCreate()`, `PCSetType()`, `PCASM`, `PCJACOBI`, `PCPBJACOBI`, `PCVPBJACOBI`, `SNESPATCH`
3181e5893cccSMatthew G. Knepley M*/
3182d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PCCreate_Patch(PC pc)
3183d71ae5a4SJacob Faibussowitsch {
31844bbf5ea8SMatthew G. Knepley   PC_PATCH *patch;
31854bbf5ea8SMatthew G. Knepley 
31864bbf5ea8SMatthew G. Knepley   PetscFunctionBegin;
3187f39ec787SMatthew G. Knepley   PetscCall(PetscCitationsRegister(PCPatchCitation, &PCPatchcite));
31884dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&patch));
31894bbf5ea8SMatthew G. Knepley 
319048a46eb9SPierre Jolivet   if (patch->subspaces_to_exclude) PetscCall(PetscHSetIDestroy(&patch->subspaces_to_exclude));
31919566063dSJacob Faibussowitsch   PetscCall(PetscHSetICreate(&patch->subspaces_to_exclude));
3192e4c66b91SPatrick Farrell 
319310534d48SPatrick Farrell   patch->classname   = "pc";
3194debbdec3SPatrick Farrell   patch->isNonlinear = PETSC_FALSE;
319510534d48SPatrick Farrell 
31964bbf5ea8SMatthew G. Knepley   /* Set some defaults */
31975f824522SMatthew G. Knepley   patch->combined                 = PETSC_FALSE;
31984bbf5ea8SMatthew G. Knepley   patch->save_operators           = PETSC_TRUE;
319961c4b389SFlorian Wechsung   patch->local_composition_type   = PC_COMPOSITE_ADDITIVE;
3200fa84ea4cSLawrence Mitchell   patch->precomputeElementTensors = PETSC_FALSE;
32014bbf5ea8SMatthew G. Knepley   patch->partition_of_unity       = PETSC_FALSE;
32024bbf5ea8SMatthew G. Knepley   patch->codim                    = -1;
32034bbf5ea8SMatthew G. Knepley   patch->dim                      = -1;
32044bbf5ea8SMatthew G. Knepley   patch->vankadim                 = -1;
32055f824522SMatthew G. Knepley   patch->ignoredim                = -1;
3206b525f888SPatrick Farrell   patch->pardecomp_overlap        = 0;
32074bbf5ea8SMatthew G. Knepley   patch->patchconstructop         = PCPatchConstruct_Star;
32084bbf5ea8SMatthew G. Knepley   patch->symmetrise_sweep         = PETSC_FALSE;
32095f824522SMatthew G. Knepley   patch->npatch                   = 0;
32104bbf5ea8SMatthew G. Knepley   patch->userIS                   = NULL;
32115f824522SMatthew G. Knepley   patch->optionsSet               = PETSC_FALSE;
32124bbf5ea8SMatthew G. Knepley   patch->iterationSet             = NULL;
32134bbf5ea8SMatthew G. Knepley   patch->user_patches             = PETSC_FALSE;
32149566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATDENSE, (char **)&patch->sub_mat_type));
32155f824522SMatthew G. Knepley   patch->viewPatches                       = PETSC_FALSE;
32165f824522SMatthew G. Knepley   patch->viewCells                         = PETSC_FALSE;
32175f824522SMatthew G. Knepley   patch->viewPoints                        = PETSC_FALSE;
32185f824522SMatthew G. Knepley   patch->viewSection                       = PETSC_FALSE;
32195f824522SMatthew G. Knepley   patch->viewMatrix                        = PETSC_FALSE;
32209d4fc724SLawrence Mitchell   patch->densesolve                        = NULL;
3221dadc69c5SMatthew G. Knepley   patch->setupsolver                       = PCSetUp_PATCH_Linear;
3222dadc69c5SMatthew G. Knepley   patch->applysolver                       = PCApply_PATCH_Linear;
3223dadc69c5SMatthew G. Knepley   patch->resetsolver                       = PCReset_PATCH_Linear;
3224dadc69c5SMatthew G. Knepley   patch->destroysolver                     = PCDestroy_PATCH_Linear;
32256c9c532dSPatrick Farrell   patch->updatemultiplicative              = PCUpdateMultiplicative_PATCH_Linear;
322647aca4a6SPatrick Farrell   patch->dofMappingWithoutToWithArtificial = NULL;
322747aca4a6SPatrick Farrell   patch->dofMappingWithoutToWithAll        = NULL;
32284bbf5ea8SMatthew G. Knepley 
32294bbf5ea8SMatthew G. Knepley   pc->data                 = (void *)patch;
32304bbf5ea8SMatthew G. Knepley   pc->ops->apply           = PCApply_PATCH;
32310a545947SLisandro Dalcin   pc->ops->applytranspose  = NULL; /* PCApplyTranspose_PATCH; */
32324bbf5ea8SMatthew G. Knepley   pc->ops->setup           = PCSetUp_PATCH;
32334bbf5ea8SMatthew G. Knepley   pc->ops->reset           = PCReset_PATCH;
32344bbf5ea8SMatthew G. Knepley   pc->ops->destroy         = PCDestroy_PATCH;
32354bbf5ea8SMatthew G. Knepley   pc->ops->setfromoptions  = PCSetFromOptions_PATCH;
32364bbf5ea8SMatthew G. Knepley   pc->ops->setuponblocks   = PCSetUpOnBlocks_PATCH;
32374bbf5ea8SMatthew G. Knepley   pc->ops->view            = PCView_PATCH;
32380a545947SLisandro Dalcin   pc->ops->applyrichardson = NULL;
32393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32404bbf5ea8SMatthew G. Knepley }
3241