14bbf5ea8SMatthew G. Knepley #include <petsc/private/pcpatchimpl.h> /*I "petscpc.h" I*/ 254ab768cSLawrence Mitchell #include <petsc/private/kspimpl.h> /* For ksp->setfromoptionscalled */ 39d4fc724SLawrence Mitchell #include <petsc/private/vecimpl.h> /* For vec->map */ 45f824522SMatthew G. Knepley #include <petsc/private/dmpleximpl.h> /* For DMPlexComputeJacobian_Patch_Internal() */ 54bbf5ea8SMatthew G. Knepley #include <petscsf.h> 64bbf5ea8SMatthew G. Knepley #include <petscbt.h> 75f824522SMatthew G. Knepley #include <petscds.h> 8c73d2cf6SLawrence Mitchell #include <../src/mat/impls/dense/seq/dense.h> /*I "petscmat.h" I*/ 94bbf5ea8SMatthew G. Knepley 10f39ec787SMatthew G. Knepley PetscBool PCPatchcite = PETSC_FALSE; 11f39ec787SMatthew G. Knepley const char PCPatchCitation[] = "@article{FarrellKnepleyWechsungMitchell2020,\n" 12f39ec787SMatthew G. Knepley "title = {{PCPATCH}: software for the topological construction of multigrid relaxation methods},\n" 13f39ec787SMatthew G. Knepley "author = {Patrick E Farrell and Matthew G Knepley and Lawrence Mitchell and Florian Wechsung},\n" 14f39ec787SMatthew G. Knepley "journal = {ACM Transaction on Mathematical Software},\n" 15f39ec787SMatthew G. Knepley "eprint = {http://arxiv.org/abs/1912.08516},\n" 16f39ec787SMatthew G. Knepley "volume = {47},\n" 17f39ec787SMatthew G. Knepley "number = {3},\n" 18f39ec787SMatthew G. Knepley "pages = {1--22},\n" 19f39ec787SMatthew G. Knepley "year = {2021},\n" 20f39ec787SMatthew G. Knepley "petsc_uses={KSP,DMPlex}\n}\n"; 21f39ec787SMatthew G. Knepley 229d4fc724SLawrence Mitchell PetscLogEvent PC_Patch_CreatePatches, PC_Patch_ComputeOp, PC_Patch_Solve, PC_Patch_Apply, PC_Patch_Prealloc; 234bbf5ea8SMatthew G. Knepley 24d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode ObjectView(PetscObject obj, PetscViewer viewer, PetscViewerFormat format) 25d71ae5a4SJacob Faibussowitsch { 269566063dSJacob Faibussowitsch PetscCall(PetscViewerPushFormat(viewer, format)); 279566063dSJacob Faibussowitsch PetscCall(PetscObjectView(obj, viewer)); 289566063dSJacob Faibussowitsch PetscCall(PetscViewerPopFormat(viewer)); 293ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 305f824522SMatthew G. Knepley } 315f824522SMatthew G. Knepley 32d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchConstruct_Star(void *vpatch, DM dm, PetscInt point, PetscHSetI ht) 33d71ae5a4SJacob Faibussowitsch { 344bbf5ea8SMatthew G. Knepley PetscInt starSize; 354bbf5ea8SMatthew G. Knepley PetscInt *star = NULL, si; 364bbf5ea8SMatthew G. Knepley 374bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 389566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 394bbf5ea8SMatthew G. Knepley /* To start with, add the point we care about */ 409566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(ht, point)); 414bbf5ea8SMatthew G. Knepley /* Loop over all the points that this point connects to */ 429566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_FALSE, &starSize, &star)); 439566063dSJacob Faibussowitsch for (si = 0; si < starSize * 2; si += 2) PetscCall(PetscHSetIAdd(ht, star[si])); 449566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_FALSE, &starSize, &star)); 453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 464bbf5ea8SMatthew G. Knepley } 474bbf5ea8SMatthew G. Knepley 48d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchConstruct_Vanka(void *vpatch, DM dm, PetscInt point, PetscHSetI ht) 49d71ae5a4SJacob Faibussowitsch { 504bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)vpatch; 514bbf5ea8SMatthew G. Knepley PetscInt starSize; 524bbf5ea8SMatthew G. Knepley PetscInt *star = NULL; 534bbf5ea8SMatthew G. Knepley PetscBool shouldIgnore = PETSC_FALSE; 544bbf5ea8SMatthew G. Knepley PetscInt cStart, cEnd, iStart, iEnd, si; 554bbf5ea8SMatthew G. Knepley 564bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 579566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 584bbf5ea8SMatthew G. Knepley /* To start with, add the point we care about */ 599566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(ht, point)); 604bbf5ea8SMatthew G. Knepley /* Should we ignore any points of a certain dimension? */ 614bbf5ea8SMatthew G. Knepley if (patch->vankadim >= 0) { 624bbf5ea8SMatthew G. Knepley shouldIgnore = PETSC_TRUE; 639566063dSJacob Faibussowitsch PetscCall(DMPlexGetDepthStratum(dm, patch->vankadim, &iStart, &iEnd)); 644bbf5ea8SMatthew G. Knepley } 659566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 664bbf5ea8SMatthew G. Knepley /* Loop over all the cells that this point connects to */ 679566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_FALSE, &starSize, &star)); 685f824522SMatthew G. Knepley for (si = 0; si < starSize * 2; si += 2) { 694bbf5ea8SMatthew G. Knepley const PetscInt cell = star[si]; 704bbf5ea8SMatthew G. Knepley PetscInt closureSize; 714bbf5ea8SMatthew G. Knepley PetscInt *closure = NULL, ci; 724bbf5ea8SMatthew G. Knepley 734bbf5ea8SMatthew G. Knepley if (cell < cStart || cell >= cEnd) continue; 744bbf5ea8SMatthew G. Knepley /* now loop over all entities in the closure of that cell */ 759566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 765f824522SMatthew G. Knepley for (ci = 0; ci < closureSize * 2; ci += 2) { 774bbf5ea8SMatthew G. Knepley const PetscInt newpoint = closure[ci]; 784bbf5ea8SMatthew G. Knepley 794bbf5ea8SMatthew G. Knepley /* We've been told to ignore entities of this type.*/ 804bbf5ea8SMatthew G. Knepley if (shouldIgnore && newpoint >= iStart && newpoint < iEnd) continue; 819566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(ht, newpoint)); 824bbf5ea8SMatthew G. Knepley } 839566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure)); 844bbf5ea8SMatthew G. Knepley } 859566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_FALSE, &starSize, &star)); 863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 874bbf5ea8SMatthew G. Knepley } 884bbf5ea8SMatthew G. Knepley 89d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchConstruct_Pardecomp(void *vpatch, DM dm, PetscInt point, PetscHSetI ht) 90d71ae5a4SJacob Faibussowitsch { 91b525f888SPatrick Farrell PC_PATCH *patch = (PC_PATCH *)vpatch; 920a390943SPatrick Farrell DMLabel ghost = NULL; 93eae3dc7dSJacob Faibussowitsch const PetscInt *leaves = NULL; 94eae3dc7dSJacob Faibussowitsch PetscInt nleaves = 0, pStart, pEnd, loc; 950a390943SPatrick Farrell PetscBool isFiredrake; 960a390943SPatrick Farrell PetscBool flg; 97b525f888SPatrick Farrell PetscInt starSize; 98b525f888SPatrick Farrell PetscInt *star = NULL; 9925fd193aSPatrick Farrell PetscInt opoint, overlapi; 1000a390943SPatrick Farrell 1010a390943SPatrick Farrell PetscFunctionBegin; 1029566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 1030a390943SPatrick Farrell 1049566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 1050a390943SPatrick Farrell 1069566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, "pyop2_ghost", &isFiredrake)); 1070a390943SPatrick Farrell if (isFiredrake) { 1089566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "pyop2_ghost", &ghost)); 1099566063dSJacob Faibussowitsch PetscCall(DMLabelCreateIndex(ghost, pStart, pEnd)); 1100a390943SPatrick Farrell } else { 1110a390943SPatrick Farrell PetscSF sf; 1129566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 1139566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 1140a390943SPatrick Farrell nleaves = PetscMax(nleaves, 0); 1150a390943SPatrick Farrell } 1160a390943SPatrick Farrell 11725fd193aSPatrick Farrell for (opoint = pStart; opoint < pEnd; ++opoint) { 1189566063dSJacob Faibussowitsch if (ghost) PetscCall(DMLabelHasPoint(ghost, opoint, &flg)); 1199371c9d4SSatish Balay else { 1209371c9d4SSatish Balay PetscCall(PetscFindInt(opoint, nleaves, leaves, &loc)); 1219371c9d4SSatish Balay flg = loc >= 0 ? PETSC_TRUE : PETSC_FALSE; 1229371c9d4SSatish Balay } 1230a390943SPatrick Farrell /* Not an owned entity, don't make a cell patch. */ 1240a390943SPatrick Farrell if (flg) continue; 1259566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(ht, opoint)); 1260a390943SPatrick Farrell } 1270a390943SPatrick Farrell 128b525f888SPatrick Farrell /* Now build the overlap for the patch */ 12925fd193aSPatrick Farrell for (overlapi = 0; overlapi < patch->pardecomp_overlap; ++overlapi) { 130b525f888SPatrick Farrell PetscInt index = 0; 131b525f888SPatrick Farrell PetscInt *htpoints = NULL; 132b525f888SPatrick Farrell PetscInt htsize; 13325fd193aSPatrick Farrell PetscInt i; 134b525f888SPatrick Farrell 1359566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(ht, &htsize)); 1369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(htsize, &htpoints)); 1379566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetElems(ht, &index, htpoints)); 138b525f888SPatrick Farrell 13925fd193aSPatrick Farrell for (i = 0; i < htsize; ++i) { 14025fd193aSPatrick Farrell PetscInt hpoint = htpoints[i]; 14125fd193aSPatrick Farrell PetscInt si; 142b525f888SPatrick Farrell 1439566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, hpoint, PETSC_FALSE, &starSize, &star)); 14425fd193aSPatrick Farrell for (si = 0; si < starSize * 2; si += 2) { 145b525f888SPatrick Farrell const PetscInt starp = star[si]; 146b525f888SPatrick Farrell PetscInt closureSize; 147b525f888SPatrick Farrell PetscInt *closure = NULL, ci; 148b525f888SPatrick Farrell 149b525f888SPatrick Farrell /* now loop over all entities in the closure of starp */ 1509566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, starp, PETSC_TRUE, &closureSize, &closure)); 15125fd193aSPatrick Farrell for (ci = 0; ci < closureSize * 2; ci += 2) { 152b525f888SPatrick Farrell const PetscInt closstarp = closure[ci]; 1539566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(ht, closstarp)); 154b525f888SPatrick Farrell } 1559566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, starp, PETSC_TRUE, &closureSize, &closure)); 156b525f888SPatrick Farrell } 1579566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, hpoint, PETSC_FALSE, &starSize, &star)); 158b525f888SPatrick Farrell } 1599566063dSJacob Faibussowitsch PetscCall(PetscFree(htpoints)); 160b525f888SPatrick Farrell } 1613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1620a390943SPatrick Farrell } 1630a390943SPatrick Farrell 1644bbf5ea8SMatthew G. Knepley /* The user's already set the patches in patch->userIS. Build the hash tables */ 165d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchConstruct_User(void *vpatch, DM dm, PetscInt point, PetscHSetI ht) 166d71ae5a4SJacob Faibussowitsch { 1674bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)vpatch; 1684bbf5ea8SMatthew G. Knepley IS patchis = patch->userIS[point]; 1694bbf5ea8SMatthew G. Knepley PetscInt n; 1704bbf5ea8SMatthew G. Knepley const PetscInt *patchdata; 1714bbf5ea8SMatthew G. Knepley PetscInt pStart, pEnd, i; 1724bbf5ea8SMatthew G. Knepley 1734bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 1749566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 1759566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 1769566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(patchis, &n)); 1779566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patchis, &patchdata)); 1784bbf5ea8SMatthew G. Knepley for (i = 0; i < n; ++i) { 1794bbf5ea8SMatthew G. Knepley const PetscInt ownedpoint = patchdata[i]; 1804bbf5ea8SMatthew G. Knepley 1817a46b595SBarry Smith PetscCheck(ownedpoint >= pStart && ownedpoint < pEnd, PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Mesh point %" PetscInt_FMT " was not in [%" PetscInt_FMT ", %" PetscInt_FMT ")", ownedpoint, pStart, pEnd); 1829566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(ht, ownedpoint)); 1834bbf5ea8SMatthew G. Knepley } 1849566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patchis, &patchdata)); 1853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1864bbf5ea8SMatthew G. Knepley } 1874bbf5ea8SMatthew G. Knepley 188d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchCreateDefaultSF_Private(PC pc, PetscInt n, const PetscSF *sf, const PetscInt *bs) 189d71ae5a4SJacob Faibussowitsch { 1904bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 1914bbf5ea8SMatthew G. Knepley PetscInt i; 1924bbf5ea8SMatthew G. Knepley 1934bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 1944bbf5ea8SMatthew G. Knepley if (n == 1 && bs[0] == 1) { 1951bb6d2a8SBarry Smith patch->sectionSF = sf[0]; 1969566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)patch->sectionSF)); 1974bbf5ea8SMatthew G. Knepley } else { 1984bbf5ea8SMatthew G. Knepley PetscInt allRoots = 0, allLeaves = 0; 1994bbf5ea8SMatthew G. Knepley PetscInt leafOffset = 0; 2004bbf5ea8SMatthew G. Knepley PetscInt *ilocal = NULL; 2014bbf5ea8SMatthew G. Knepley PetscSFNode *iremote = NULL; 2024bbf5ea8SMatthew G. Knepley PetscInt *remoteOffsets = NULL; 2034bbf5ea8SMatthew G. Knepley PetscInt index = 0; 2041b68eb51SMatthew G. Knepley PetscHMapI rankToIndex; 2054bbf5ea8SMatthew G. Knepley PetscInt numRanks = 0; 2064bbf5ea8SMatthew G. Knepley PetscSFNode *remote = NULL; 2074bbf5ea8SMatthew G. Knepley PetscSF rankSF; 2084bbf5ea8SMatthew G. Knepley PetscInt *ranks = NULL; 2094bbf5ea8SMatthew G. Knepley PetscInt *offsets = NULL; 2104bbf5ea8SMatthew G. Knepley MPI_Datatype contig; 2111b68eb51SMatthew G. Knepley PetscHSetI ranksUniq; 2126497c311SBarry Smith PetscMPIInt in; 2134bbf5ea8SMatthew G. Knepley 2144bbf5ea8SMatthew G. Knepley /* First figure out how many dofs there are in the concatenated numbering. 215f1580f4eSBarry Smith allRoots: number of owned global dofs; 216f1580f4eSBarry Smith allLeaves: number of visible dofs (global + ghosted). 2174bbf5ea8SMatthew G. Knepley */ 2184bbf5ea8SMatthew G. Knepley for (i = 0; i < n; ++i) { 2194bbf5ea8SMatthew G. Knepley PetscInt nroots, nleaves; 2204bbf5ea8SMatthew G. Knepley 2219566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf[i], &nroots, &nleaves, NULL, NULL)); 2224bbf5ea8SMatthew G. Knepley allRoots += nroots * bs[i]; 2234bbf5ea8SMatthew G. Knepley allLeaves += nleaves * bs[i]; 2244bbf5ea8SMatthew G. Knepley } 2259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(allLeaves, &ilocal)); 2269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(allLeaves, &iremote)); 2274bbf5ea8SMatthew G. Knepley /* Now build an SF that just contains process connectivity. */ 2289566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ranksUniq)); 2294bbf5ea8SMatthew G. Knepley for (i = 0; i < n; ++i) { 2304bbf5ea8SMatthew G. Knepley const PetscMPIInt *ranks = NULL; 2316497c311SBarry Smith PetscMPIInt nranks; 2324bbf5ea8SMatthew G. Knepley 2339566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf[i])); 2349566063dSJacob Faibussowitsch PetscCall(PetscSFGetRootRanks(sf[i], &nranks, &ranks, NULL, NULL, NULL)); 2354bbf5ea8SMatthew G. Knepley /* These are all the ranks who communicate with me. */ 2366497c311SBarry Smith for (PetscMPIInt j = 0; j < nranks; ++j) PetscCall(PetscHSetIAdd(ranksUniq, (PetscInt)ranks[j])); 2374bbf5ea8SMatthew G. Knepley } 2389566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(ranksUniq, &numRanks)); 2399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRanks, &remote)); 2409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRanks, &ranks)); 2419566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetElems(ranksUniq, &index, ranks)); 2424bbf5ea8SMatthew G. Knepley 2439566063dSJacob Faibussowitsch PetscCall(PetscHMapICreate(&rankToIndex)); 2446497c311SBarry Smith for (PetscInt i = 0; i < numRanks; ++i) { 2456497c311SBarry Smith remote[i].rank = (PetscMPIInt)ranks[i]; 2464bbf5ea8SMatthew G. Knepley remote[i].index = 0; 2479566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(rankToIndex, ranks[i], i)); 2484bbf5ea8SMatthew G. Knepley } 2499566063dSJacob Faibussowitsch PetscCall(PetscFree(ranks)); 2509566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ranksUniq)); 2519566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)pc), &rankSF)); 2529566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(rankSF, 1, numRanks, NULL, PETSC_OWN_POINTER, remote, PETSC_OWN_POINTER)); 2539566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(rankSF)); 254f1580f4eSBarry Smith /* OK, use it to communicate the root offset on the remote processes for each subspace. */ 2559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &offsets)); 2569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n * numRanks, &remoteOffsets)); 2574bbf5ea8SMatthew G. Knepley 2584bbf5ea8SMatthew G. Knepley offsets[0] = 0; 2594bbf5ea8SMatthew G. Knepley for (i = 1; i < n; ++i) { 2604bbf5ea8SMatthew G. Knepley PetscInt nroots; 2614bbf5ea8SMatthew G. Knepley 2629566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf[i - 1], &nroots, NULL, NULL, NULL)); 2634bbf5ea8SMatthew G. Knepley offsets[i] = offsets[i - 1] + nroots * bs[i - 1]; 2644bbf5ea8SMatthew G. Knepley } 265f1580f4eSBarry Smith /* Offsets are the offsets on the current process of the global dof numbering for the subspaces. */ 2666497c311SBarry Smith PetscCall(PetscMPIIntCast(n, &in)); 2676497c311SBarry Smith PetscCallMPI(MPI_Type_contiguous(in, MPIU_INT, &contig)); 2689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&contig)); 2694bbf5ea8SMatthew G. Knepley 2709566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rankSF, contig, offsets, remoteOffsets, MPI_REPLACE)); 2719566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rankSF, contig, offsets, remoteOffsets, MPI_REPLACE)); 2729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&contig)); 2739566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 2749566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rankSF)); 2754bbf5ea8SMatthew G. Knepley /* Now remoteOffsets contains the offsets on the remote 276f1580f4eSBarry Smith processes who communicate with me. So now we can 277f1580f4eSBarry Smith concatenate the list of SFs into a single one. */ 2784bbf5ea8SMatthew G. Knepley index = 0; 2794bbf5ea8SMatthew G. Knepley for (i = 0; i < n; ++i) { 2804bbf5ea8SMatthew G. Knepley const PetscSFNode *remote = NULL; 2814bbf5ea8SMatthew G. Knepley const PetscInt *local = NULL; 2824bbf5ea8SMatthew G. Knepley PetscInt nroots, nleaves, j; 2834bbf5ea8SMatthew G. Knepley 2849566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf[i], &nroots, &nleaves, &local, &remote)); 2854bbf5ea8SMatthew G. Knepley for (j = 0; j < nleaves; ++j) { 2864bbf5ea8SMatthew G. Knepley PetscInt rank = remote[j].rank; 2874bbf5ea8SMatthew G. Knepley PetscInt idx, rootOffset, k; 2884bbf5ea8SMatthew G. Knepley 2899566063dSJacob Faibussowitsch PetscCall(PetscHMapIGet(rankToIndex, rank, &idx)); 29008401ef6SPierre Jolivet PetscCheck(idx != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Didn't find rank, huh?"); 2914bbf5ea8SMatthew G. Knepley /* Offset on given rank for ith subspace */ 2924bbf5ea8SMatthew G. Knepley rootOffset = remoteOffsets[n * idx + i]; 2934bbf5ea8SMatthew G. Knepley for (k = 0; k < bs[i]; ++k) { 29473ec7555SLawrence Mitchell ilocal[index] = (local ? local[j] : j) * bs[i] + k + leafOffset; 2954bbf5ea8SMatthew G. Knepley iremote[index].rank = remote[j].rank; 2964bbf5ea8SMatthew G. Knepley iremote[index].index = remote[j].index * bs[i] + k + rootOffset; 2974bbf5ea8SMatthew G. Knepley ++index; 2984bbf5ea8SMatthew G. Knepley } 2994bbf5ea8SMatthew G. Knepley } 3004bbf5ea8SMatthew G. Knepley leafOffset += nleaves * bs[i]; 3014bbf5ea8SMatthew G. Knepley } 3029566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&rankToIndex)); 3039566063dSJacob Faibussowitsch PetscCall(PetscFree(remoteOffsets)); 3049566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)pc), &patch->sectionSF)); 3059566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(patch->sectionSF, allRoots, allLeaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 3064bbf5ea8SMatthew G. Knepley } 3073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3084bbf5ea8SMatthew G. Knepley } 3094bbf5ea8SMatthew G. Knepley 3104bbf5ea8SMatthew G. Knepley /* TODO: Docs */ 311ba38deedSJacob Faibussowitsch static PetscErrorCode PCPatchGetIgnoreDim(PC pc, PetscInt *dim) 312d71ae5a4SJacob Faibussowitsch { 3135f824522SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 3144d86920dSPierre Jolivet 3155f824522SMatthew G. Knepley PetscFunctionBegin; 3165f824522SMatthew G. Knepley *dim = patch->ignoredim; 3173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3185f824522SMatthew G. Knepley } 3195f824522SMatthew G. Knepley 3205f824522SMatthew G. Knepley /* TODO: Docs */ 321d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetSaveOperators(PC pc, PetscBool flg) 322d71ae5a4SJacob Faibussowitsch { 3234bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 3244d86920dSPierre Jolivet 3254bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 3264bbf5ea8SMatthew G. Knepley patch->save_operators = flg; 3273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3284bbf5ea8SMatthew G. Knepley } 3294bbf5ea8SMatthew G. Knepley 3304bbf5ea8SMatthew G. Knepley /* TODO: Docs */ 331d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchGetSaveOperators(PC pc, PetscBool *flg) 332d71ae5a4SJacob Faibussowitsch { 3334bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 3344d86920dSPierre Jolivet 3354bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 3364bbf5ea8SMatthew G. Knepley *flg = patch->save_operators; 3373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3384bbf5ea8SMatthew G. Knepley } 3394bbf5ea8SMatthew G. Knepley 3404bbf5ea8SMatthew G. Knepley /* TODO: Docs */ 341d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetPrecomputeElementTensors(PC pc, PetscBool flg) 342d71ae5a4SJacob Faibussowitsch { 343fa84ea4cSLawrence Mitchell PC_PATCH *patch = (PC_PATCH *)pc->data; 3444d86920dSPierre Jolivet 345fa84ea4cSLawrence Mitchell PetscFunctionBegin; 346fa84ea4cSLawrence Mitchell patch->precomputeElementTensors = flg; 3473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 348fa84ea4cSLawrence Mitchell } 349fa84ea4cSLawrence Mitchell 350fa84ea4cSLawrence Mitchell /* TODO: Docs */ 351d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchGetPrecomputeElementTensors(PC pc, PetscBool *flg) 352d71ae5a4SJacob Faibussowitsch { 353fa84ea4cSLawrence Mitchell PC_PATCH *patch = (PC_PATCH *)pc->data; 3544d86920dSPierre Jolivet 355fa84ea4cSLawrence Mitchell PetscFunctionBegin; 356fa84ea4cSLawrence Mitchell *flg = patch->precomputeElementTensors; 3573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 358fa84ea4cSLawrence Mitchell } 359fa84ea4cSLawrence Mitchell 360fa84ea4cSLawrence Mitchell /* TODO: Docs */ 361d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetPartitionOfUnity(PC pc, PetscBool flg) 362d71ae5a4SJacob Faibussowitsch { 3634bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 3644d86920dSPierre Jolivet 3654bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 3664bbf5ea8SMatthew G. Knepley patch->partition_of_unity = flg; 3673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3684bbf5ea8SMatthew G. Knepley } 3694bbf5ea8SMatthew G. Knepley 3704bbf5ea8SMatthew G. Knepley /* TODO: Docs */ 371d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchGetPartitionOfUnity(PC pc, PetscBool *flg) 372d71ae5a4SJacob Faibussowitsch { 3734bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 3744d86920dSPierre Jolivet 3754bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 3764bbf5ea8SMatthew G. Knepley *flg = patch->partition_of_unity; 3773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3784bbf5ea8SMatthew G. Knepley } 3794bbf5ea8SMatthew G. Knepley 3804bbf5ea8SMatthew G. Knepley /* TODO: Docs */ 381ba38deedSJacob Faibussowitsch static PetscErrorCode PCPatchSetLocalComposition(PC pc, PCCompositeType type) 382d71ae5a4SJacob Faibussowitsch { 383c2e6f3c0SFlorian Wechsung PC_PATCH *patch = (PC_PATCH *)pc->data; 3844d86920dSPierre Jolivet 385c2e6f3c0SFlorian Wechsung PetscFunctionBegin; 3862472a847SBarry Smith PetscCheck(type == PC_COMPOSITE_ADDITIVE || type == PC_COMPOSITE_MULTIPLICATIVE, PetscObjectComm((PetscObject)pc), PETSC_ERR_SUP, "Only supports additive or multiplicative as the local type"); 38761c4b389SFlorian Wechsung patch->local_composition_type = type; 3883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 389c2e6f3c0SFlorian Wechsung } 390c2e6f3c0SFlorian Wechsung 391c2e6f3c0SFlorian Wechsung /* TODO: Docs */ 392fb80e629SPablo Brubeck PetscErrorCode PCPatchGetSubKSP(PC pc, PetscInt *npatch, KSP **ksp) 393fb80e629SPablo Brubeck { 394fb80e629SPablo Brubeck PC_PATCH *patch = (PC_PATCH *)pc->data; 395fb80e629SPablo Brubeck PetscInt i; 396fb80e629SPablo Brubeck 397fb80e629SPablo Brubeck PetscFunctionBegin; 398fb80e629SPablo Brubeck PetscCheck(pc->setupcalled, PetscObjectComm((PetscObject)pc), PETSC_ERR_ORDER, "Need to call PCSetUp() on PC (or KSPSetUp() on the outer KSP object) before calling here"); 399fb80e629SPablo Brubeck 400fb80e629SPablo Brubeck PetscCall(PetscMalloc1(patch->npatch, ksp)); 401fb80e629SPablo Brubeck for (i = 0; i < patch->npatch; ++i) (*ksp)[i] = (KSP)patch->solver[i]; 402fb80e629SPablo Brubeck if (npatch) *npatch = patch->npatch; 403fb80e629SPablo Brubeck PetscFunctionReturn(PETSC_SUCCESS); 404fb80e629SPablo Brubeck } 405fb80e629SPablo Brubeck 406fb80e629SPablo Brubeck /* TODO: Docs */ 407d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetSubMatType(PC pc, MatType sub_mat_type) 408d71ae5a4SJacob Faibussowitsch { 4094bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 4104bbf5ea8SMatthew G. Knepley 4114bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 4129566063dSJacob Faibussowitsch if (patch->sub_mat_type) PetscCall(PetscFree(patch->sub_mat_type)); 4139566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(sub_mat_type, (char **)&patch->sub_mat_type)); 4143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4154bbf5ea8SMatthew G. Knepley } 4164bbf5ea8SMatthew G. Knepley 4174bbf5ea8SMatthew G. Knepley /* TODO: Docs */ 418d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchGetSubMatType(PC pc, MatType *sub_mat_type) 419d71ae5a4SJacob Faibussowitsch { 4204bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 4214d86920dSPierre Jolivet 4224bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 4234bbf5ea8SMatthew G. Knepley *sub_mat_type = patch->sub_mat_type; 4243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4254bbf5ea8SMatthew G. Knepley } 4264bbf5ea8SMatthew G. Knepley 4274bbf5ea8SMatthew G. Knepley /* TODO: Docs */ 428d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetCellNumbering(PC pc, PetscSection cellNumbering) 429d71ae5a4SJacob Faibussowitsch { 4304bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 4314bbf5ea8SMatthew G. Knepley 4324bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 4334bbf5ea8SMatthew G. Knepley patch->cellNumbering = cellNumbering; 4349566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)cellNumbering)); 4353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4364bbf5ea8SMatthew G. Knepley } 4374bbf5ea8SMatthew G. Knepley 4384bbf5ea8SMatthew G. Knepley /* TODO: Docs */ 439d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchGetCellNumbering(PC pc, PetscSection *cellNumbering) 440d71ae5a4SJacob Faibussowitsch { 4414bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 4424d86920dSPierre Jolivet 4434bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 4444bbf5ea8SMatthew G. Knepley *cellNumbering = patch->cellNumbering; 4453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4464bbf5ea8SMatthew G. Knepley } 4474bbf5ea8SMatthew G. Knepley 4484bbf5ea8SMatthew G. Knepley /* TODO: Docs */ 449d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetConstructType(PC pc, PCPatchConstructType ctype, PetscErrorCode (*func)(PC, PetscInt *, IS **, IS *, void *), void *ctx) 450d71ae5a4SJacob Faibussowitsch { 4514bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 4524bbf5ea8SMatthew G. Knepley 4534bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 4544bbf5ea8SMatthew G. Knepley patch->ctype = ctype; 4554bbf5ea8SMatthew G. Knepley switch (ctype) { 4564bbf5ea8SMatthew G. Knepley case PC_PATCH_STAR: 45740c17a03SPatrick Farrell patch->user_patches = PETSC_FALSE; 4584bbf5ea8SMatthew G. Knepley patch->patchconstructop = PCPatchConstruct_Star; 4594bbf5ea8SMatthew G. Knepley break; 4604bbf5ea8SMatthew G. Knepley case PC_PATCH_VANKA: 46140c17a03SPatrick Farrell patch->user_patches = PETSC_FALSE; 4624bbf5ea8SMatthew G. Knepley patch->patchconstructop = PCPatchConstruct_Vanka; 4634bbf5ea8SMatthew G. Knepley break; 464e5b9877fSPatrick Farrell case PC_PATCH_PARDECOMP: 4650a390943SPatrick Farrell patch->user_patches = PETSC_FALSE; 466e5b9877fSPatrick Farrell patch->patchconstructop = PCPatchConstruct_Pardecomp; 4670a390943SPatrick Farrell break; 4684bbf5ea8SMatthew G. Knepley case PC_PATCH_USER: 4694bbf5ea8SMatthew G. Knepley case PC_PATCH_PYTHON: 4704bbf5ea8SMatthew G. Knepley patch->user_patches = PETSC_TRUE; 4714bbf5ea8SMatthew G. Knepley patch->patchconstructop = PCPatchConstruct_User; 472bdd9e0cdSPatrick Farrell if (func) { 4734bbf5ea8SMatthew G. Knepley patch->userpatchconstructionop = func; 4744bbf5ea8SMatthew G. Knepley patch->userpatchconstructctx = ctx; 475bdd9e0cdSPatrick Farrell } 4764bbf5ea8SMatthew G. Knepley break; 477d71ae5a4SJacob Faibussowitsch default: 478d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)pc), PETSC_ERR_USER, "Unknown patch construction type %" PetscInt_FMT, (PetscInt)patch->ctype); 4794bbf5ea8SMatthew G. Knepley } 4803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4814bbf5ea8SMatthew G. Knepley } 4824bbf5ea8SMatthew G. Knepley 4834bbf5ea8SMatthew G. Knepley /* TODO: Docs */ 484d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchGetConstructType(PC pc, PCPatchConstructType *ctype, PetscErrorCode (**func)(PC, PetscInt *, IS **, IS *, void *), void **ctx) 485d71ae5a4SJacob Faibussowitsch { 4864bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 4874bbf5ea8SMatthew G. Knepley 4884bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 4894bbf5ea8SMatthew G. Knepley *ctype = patch->ctype; 4904bbf5ea8SMatthew G. Knepley switch (patch->ctype) { 4914bbf5ea8SMatthew G. Knepley case PC_PATCH_STAR: 4924bbf5ea8SMatthew G. Knepley case PC_PATCH_VANKA: 493d71ae5a4SJacob Faibussowitsch case PC_PATCH_PARDECOMP: 494d71ae5a4SJacob Faibussowitsch break; 4954bbf5ea8SMatthew G. Knepley case PC_PATCH_USER: 4964bbf5ea8SMatthew G. Knepley case PC_PATCH_PYTHON: 4974bbf5ea8SMatthew G. Knepley *func = patch->userpatchconstructionop; 4984bbf5ea8SMatthew G. Knepley *ctx = patch->userpatchconstructctx; 4994bbf5ea8SMatthew G. Knepley break; 500d71ae5a4SJacob Faibussowitsch default: 501d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)pc), PETSC_ERR_USER, "Unknown patch construction type %" PetscInt_FMT, (PetscInt)patch->ctype); 5024bbf5ea8SMatthew G. Knepley } 5033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5044bbf5ea8SMatthew G. Knepley } 5054bbf5ea8SMatthew G. Knepley 5064bbf5ea8SMatthew G. Knepley /* TODO: Docs */ 507d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchSetDiscretisationInfo(PC pc, PetscInt nsubspaces, DM *dms, PetscInt *bs, PetscInt *nodesPerCell, const PetscInt **cellNodeMap, const PetscInt *subspaceOffsets, PetscInt numGhostBcs, const PetscInt *ghostBcNodes, PetscInt numGlobalBcs, const PetscInt *globalBcNodes) 508d71ae5a4SJacob Faibussowitsch { 5094bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 510b6bb21d1SLawrence Mitchell DM dm, plex; 5114bbf5ea8SMatthew G. Knepley PetscSF *sfs; 5125f824522SMatthew G. Knepley PetscInt cStart, cEnd, i, j; 5134bbf5ea8SMatthew G. Knepley 5144bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 5159566063dSJacob Faibussowitsch PetscCall(PCGetDM(pc, &dm)); 5169566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 517b6bb21d1SLawrence Mitchell dm = plex; 5189566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 5199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsubspaces, &sfs)); 5209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsubspaces, &patch->dofSection)); 5219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsubspaces, &patch->bs)); 5229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsubspaces, &patch->nodesPerCell)); 5239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsubspaces, &patch->cellNodeMap)); 5249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsubspaces + 1, &patch->subspaceOffsets)); 5254bbf5ea8SMatthew G. Knepley 5264bbf5ea8SMatthew G. Knepley patch->nsubspaces = nsubspaces; 5274bbf5ea8SMatthew G. Knepley patch->totalDofsPerCell = 0; 5284bbf5ea8SMatthew G. Knepley for (i = 0; i < nsubspaces; ++i) { 5299566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dms[i], &patch->dofSection[i])); 5309566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)patch->dofSection[i])); 5319566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dms[i], &sfs[i])); 5324bbf5ea8SMatthew G. Knepley patch->bs[i] = bs[i]; 5334bbf5ea8SMatthew G. Knepley patch->nodesPerCell[i] = nodesPerCell[i]; 5344bbf5ea8SMatthew G. Knepley patch->totalDofsPerCell += nodesPerCell[i] * bs[i]; 5359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((cEnd - cStart) * nodesPerCell[i], &patch->cellNodeMap[i])); 53680e8a965SFlorian Wechsung for (j = 0; j < (cEnd - cStart) * nodesPerCell[i]; ++j) patch->cellNodeMap[i][j] = cellNodeMap[i][j]; 5374bbf5ea8SMatthew G. Knepley patch->subspaceOffsets[i] = subspaceOffsets[i]; 5384bbf5ea8SMatthew G. Knepley } 5399566063dSJacob Faibussowitsch PetscCall(PCPatchCreateDefaultSF_Private(pc, nsubspaces, sfs, patch->bs)); 5409566063dSJacob Faibussowitsch PetscCall(PetscFree(sfs)); 5414bbf5ea8SMatthew G. Knepley 5424bbf5ea8SMatthew G. Knepley patch->subspaceOffsets[nsubspaces] = subspaceOffsets[nsubspaces]; 5439566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGhostBcs, ghostBcNodes, PETSC_COPY_VALUES, &patch->ghostBcNodes)); 5449566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGlobalBcs, globalBcNodes, PETSC_COPY_VALUES, &patch->globalBcNodes)); 5459566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm)); 5463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5474bbf5ea8SMatthew G. Knepley } 5484bbf5ea8SMatthew G. Knepley 5494bbf5ea8SMatthew G. Knepley /* TODO: Docs */ 550ba38deedSJacob Faibussowitsch static PetscErrorCode PCPatchSetDiscretisationInfoCombined(PC pc, DM dm, PetscInt *nodesPerCell, const PetscInt **cellNodeMap, PetscInt numGhostBcs, const PetscInt *ghostBcNodes, PetscInt numGlobalBcs, const PetscInt *globalBcNodes) 551d71ae5a4SJacob Faibussowitsch { 5525f824522SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 5535f824522SMatthew G. Knepley PetscInt cStart, cEnd, i, j; 5545f824522SMatthew G. Knepley 5555f824522SMatthew G. Knepley PetscFunctionBegin; 5565f824522SMatthew G. Knepley patch->combined = PETSC_TRUE; 5579566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 5589566063dSJacob Faibussowitsch PetscCall(DMGetNumFields(dm, &patch->nsubspaces)); 5599566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(patch->nsubspaces, &patch->dofSection)); 5609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(patch->nsubspaces, &patch->bs)); 5619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(patch->nsubspaces, &patch->nodesPerCell)); 5629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(patch->nsubspaces, &patch->cellNodeMap)); 5639566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(patch->nsubspaces + 1, &patch->subspaceOffsets)); 5649566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &patch->dofSection[0])); 5659566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)patch->dofSection[0])); 5669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(patch->dofSection[0], &patch->subspaceOffsets[patch->nsubspaces])); 5675f824522SMatthew G. Knepley patch->totalDofsPerCell = 0; 5685f824522SMatthew G. Knepley for (i = 0; i < patch->nsubspaces; ++i) { 5695f824522SMatthew G. Knepley patch->bs[i] = 1; 5705f824522SMatthew G. Knepley patch->nodesPerCell[i] = nodesPerCell[i]; 5715f824522SMatthew G. Knepley patch->totalDofsPerCell += nodesPerCell[i]; 5729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((cEnd - cStart) * nodesPerCell[i], &patch->cellNodeMap[i])); 5735f824522SMatthew G. Knepley for (j = 0; j < (cEnd - cStart) * nodesPerCell[i]; ++j) patch->cellNodeMap[i][j] = cellNodeMap[i][j]; 5745f824522SMatthew G. Knepley } 5759566063dSJacob Faibussowitsch PetscCall(DMGetSectionSF(dm, &patch->sectionSF)); 5769566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)patch->sectionSF)); 5779566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGhostBcs, ghostBcNodes, PETSC_COPY_VALUES, &patch->ghostBcNodes)); 5789566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGlobalBcs, globalBcNodes, PETSC_COPY_VALUES, &patch->globalBcNodes)); 5793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5805f824522SMatthew G. Knepley } 5815f824522SMatthew G. Knepley 5825f824522SMatthew G. Knepley /*@C 58304c3f3b8SBarry Smith PCPatchSetComputeFunction - Set the callback function used to compute patch residuals 58492d50984SMatthew G. Knepley 58520f4b53cSBarry Smith Logically Collective 58699b7e5c6SPatrick Farrell 58792d50984SMatthew G. Knepley Input Parameters: 58820f4b53cSBarry Smith + pc - The `PC` 58904c3f3b8SBarry Smith . func - The callback function 59092d50984SMatthew G. Knepley - ctx - The user context 59192d50984SMatthew G. Knepley 59220f4b53cSBarry Smith Calling sequence of `func`: 59320f4b53cSBarry Smith + pc - The `PC` 5947a50e09dSPatrick Farrell . point - The point 5957a50e09dSPatrick Farrell . x - The input solution (not used in linear problems) 5967a50e09dSPatrick Farrell . f - The patch residual vector 5977a50e09dSPatrick Farrell . cellIS - An array of the cell numbers 59820f4b53cSBarry Smith . n - The size of `dofsArray` 5997a50e09dSPatrick Farrell . dofsArray - The dofmap for the dofs to be solved for 6007a50e09dSPatrick Farrell . dofsArrayWithAll - The dofmap for all dofs on the patch 6017a50e09dSPatrick Farrell - ctx - The user context 6027a50e09dSPatrick Farrell 60392d50984SMatthew G. Knepley Level: advanced 60492d50984SMatthew G. Knepley 605f1580f4eSBarry Smith Note: 60604c3f3b8SBarry Smith The entries of `f` (the output residual vector) have been set to zero before the call. 60792d50984SMatthew G. Knepley 608562efe2eSBarry Smith .seealso: [](ch_ksp), `PCPatchSetComputeOperator()`, `PCPatchGetComputeOperator()`, `PCPatchSetDiscretisationInfo()`, `PCPatchSetComputeFunctionInteriorFacets()` 60992d50984SMatthew G. Knepley @*/ 61004c3f3b8SBarry Smith PetscErrorCode PCPatchSetComputeFunction(PC pc, PetscErrorCode (*func)(PC pc, PetscInt point, Vec x, Vec f, IS cellIS, PetscInt n, const PetscInt *dofsArray, const PetscInt *dofsArrayWithAll, void *ctx), void *ctx) 611d71ae5a4SJacob Faibussowitsch { 61292d50984SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 61392d50984SMatthew G. Knepley 61492d50984SMatthew G. Knepley PetscFunctionBegin; 61592d50984SMatthew G. Knepley patch->usercomputef = func; 61692d50984SMatthew G. Knepley patch->usercomputefctx = ctx; 6173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61892d50984SMatthew G. Knepley } 61992d50984SMatthew G. Knepley 62092d50984SMatthew G. Knepley /*@C 62104c3f3b8SBarry Smith PCPatchSetComputeFunctionInteriorFacets - Set the callback function used to compute facet integrals for patch residuals 62259109abcSLawrence Mitchell 62320f4b53cSBarry Smith Logically Collective 6247a50e09dSPatrick Farrell 62559109abcSLawrence Mitchell Input Parameters: 62620f4b53cSBarry Smith + pc - The `PC` 62704c3f3b8SBarry Smith . func - The callback function 62859109abcSLawrence Mitchell - ctx - The user context 62959109abcSLawrence Mitchell 63020f4b53cSBarry Smith Calling sequence of `func`: 63120f4b53cSBarry Smith + pc - The `PC` 6327a50e09dSPatrick Farrell . point - The point 6337a50e09dSPatrick Farrell . x - The input solution (not used in linear problems) 6347a50e09dSPatrick Farrell . f - The patch residual vector 6357a50e09dSPatrick Farrell . facetIS - An array of the facet numbers 63620f4b53cSBarry Smith . n - The size of `dofsArray` 6377a50e09dSPatrick Farrell . dofsArray - The dofmap for the dofs to be solved for 6387a50e09dSPatrick Farrell . dofsArrayWithAll - The dofmap for all dofs on the patch 6397a50e09dSPatrick Farrell - ctx - The user context 6407a50e09dSPatrick Farrell 64159109abcSLawrence Mitchell Level: advanced 64259109abcSLawrence Mitchell 643f1580f4eSBarry Smith Note: 64404c3f3b8SBarry Smith The entries of `f` (the output residual vector) have been set to zero before the call. 64559109abcSLawrence Mitchell 646562efe2eSBarry Smith .seealso: [](ch_ksp), `PCPatchSetComputeOperator()`, `PCPatchGetComputeOperator()`, `PCPatchSetDiscretisationInfo()`, `PCPatchSetComputeFunction()` 64759109abcSLawrence Mitchell @*/ 64804c3f3b8SBarry Smith PetscErrorCode PCPatchSetComputeFunctionInteriorFacets(PC pc, PetscErrorCode (*func)(PC pc, PetscInt point, Vec x, Vec f, IS facetIS, PetscInt n, const PetscInt *dofsArray, const PetscInt *dofsArrayWithAll, void *ctx), void *ctx) 649d71ae5a4SJacob Faibussowitsch { 65059109abcSLawrence Mitchell PC_PATCH *patch = (PC_PATCH *)pc->data; 65159109abcSLawrence Mitchell 65259109abcSLawrence Mitchell PetscFunctionBegin; 65359109abcSLawrence Mitchell patch->usercomputefintfacet = func; 65459109abcSLawrence Mitchell patch->usercomputefintfacetctx = ctx; 6553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 65659109abcSLawrence Mitchell } 65759109abcSLawrence Mitchell 65859109abcSLawrence Mitchell /*@C 65904c3f3b8SBarry Smith PCPatchSetComputeOperator - Set the callback function used to compute patch matrices 6605f824522SMatthew G. Knepley 66120f4b53cSBarry Smith Logically Collective 6627a50e09dSPatrick Farrell 6635f824522SMatthew G. Knepley Input Parameters: 66420f4b53cSBarry Smith + pc - The `PC` 66504c3f3b8SBarry Smith . func - The callback function 6665f824522SMatthew G. Knepley - ctx - The user context 6675f824522SMatthew G. Knepley 66820f4b53cSBarry Smith Calling sequence of `func`: 66920f4b53cSBarry Smith + pc - The `PC` 6707a50e09dSPatrick Farrell . point - The point 6717a50e09dSPatrick Farrell . x - The input solution (not used in linear problems) 6727a50e09dSPatrick Farrell . mat - The patch matrix 67304c3f3b8SBarry Smith . facetIS - An array of the cell numbers 67420f4b53cSBarry Smith . n - The size of `dofsArray` 6757a50e09dSPatrick Farrell . dofsArray - The dofmap for the dofs to be solved for 6767a50e09dSPatrick Farrell . dofsArrayWithAll - The dofmap for all dofs on the patch 6777a50e09dSPatrick Farrell - ctx - The user context 6787a50e09dSPatrick Farrell 6795f824522SMatthew G. Knepley Level: advanced 6805f824522SMatthew G. Knepley 681f1580f4eSBarry Smith Note: 6827a50e09dSPatrick Farrell The matrix entries have been set to zero before the call. 6835f824522SMatthew G. Knepley 684562efe2eSBarry Smith .seealso: [](ch_ksp), `PCPatchGetComputeOperator()`, `PCPatchSetComputeFunction()`, `PCPatchSetDiscretisationInfo()` 6855f824522SMatthew G. Knepley @*/ 68604c3f3b8SBarry Smith PetscErrorCode PCPatchSetComputeOperator(PC pc, PetscErrorCode (*func)(PC pc, PetscInt point, Vec x, Mat mat, IS facetIS, PetscInt n, const PetscInt *dofsArray, const PetscInt *dofsArrayWithAll, void *ctx), void *ctx) 687d71ae5a4SJacob Faibussowitsch { 6884bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 6894bbf5ea8SMatthew G. Knepley 6904bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 6914bbf5ea8SMatthew G. Knepley patch->usercomputeop = func; 692723f9013SMatthew G. Knepley patch->usercomputeopctx = ctx; 6933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6944bbf5ea8SMatthew G. Knepley } 6954bbf5ea8SMatthew G. Knepley 69659109abcSLawrence Mitchell /*@C 69704c3f3b8SBarry Smith PCPatchSetComputeOperatorInteriorFacets - Set the callback function used to compute facet integrals for patch matrices 69859109abcSLawrence Mitchell 69920f4b53cSBarry Smith Logically Collective 70099b7e5c6SPatrick Farrell 70159109abcSLawrence Mitchell Input Parameters: 70220f4b53cSBarry Smith + pc - The `PC` 70304c3f3b8SBarry Smith . func - The callback function 70459109abcSLawrence Mitchell - ctx - The user context 70559109abcSLawrence Mitchell 70620f4b53cSBarry Smith Calling sequence of `func`: 70720f4b53cSBarry Smith + pc - The `PC` 7087a50e09dSPatrick Farrell . point - The point 7097a50e09dSPatrick Farrell . x - The input solution (not used in linear problems) 7107a50e09dSPatrick Farrell . mat - The patch matrix 7117a50e09dSPatrick Farrell . facetIS - An array of the facet numbers 71220f4b53cSBarry Smith . n - The size of `dofsArray` 7137a50e09dSPatrick Farrell . dofsArray - The dofmap for the dofs to be solved for 7147a50e09dSPatrick Farrell . dofsArrayWithAll - The dofmap for all dofs on the patch 7157a50e09dSPatrick Farrell - ctx - The user context 7167a50e09dSPatrick Farrell 71759109abcSLawrence Mitchell Level: advanced 71859109abcSLawrence Mitchell 719f1580f4eSBarry Smith Note: 7207a50e09dSPatrick Farrell The matrix entries have been set to zero before the call. 72159109abcSLawrence Mitchell 722562efe2eSBarry Smith .seealso: [](ch_ksp), `PCPatchGetComputeOperator()`, `PCPatchSetComputeFunction()`, `PCPatchSetDiscretisationInfo()` 72359109abcSLawrence Mitchell @*/ 72404c3f3b8SBarry Smith PetscErrorCode PCPatchSetComputeOperatorInteriorFacets(PC pc, PetscErrorCode (*func)(PC pc, PetscInt point, Vec x, Mat mat, IS facetIS, PetscInt n, const PetscInt *dofsArray, const PetscInt *dofsArrayWithAll, void *ctx), void *ctx) 725d71ae5a4SJacob Faibussowitsch { 72659109abcSLawrence Mitchell PC_PATCH *patch = (PC_PATCH *)pc->data; 72759109abcSLawrence Mitchell 72859109abcSLawrence Mitchell PetscFunctionBegin; 72959109abcSLawrence Mitchell patch->usercomputeopintfacet = func; 73059109abcSLawrence Mitchell patch->usercomputeopintfacetctx = ctx; 7313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 73259109abcSLawrence Mitchell } 73359109abcSLawrence Mitchell 7344bbf5ea8SMatthew G. Knepley /* On entry, ht contains the topological entities whose dofs we are responsible for solving for; 7354bbf5ea8SMatthew G. Knepley on exit, cht contains all the topological entities we need to compute their residuals. 7364bbf5ea8SMatthew G. Knepley In full generality this should incorporate knowledge of the sparsity pattern of the matrix; 7374bbf5ea8SMatthew G. Knepley here we assume a standard FE sparsity pattern.*/ 7384bbf5ea8SMatthew G. Knepley /* TODO: Use DMPlexGetAdjacency() */ 739d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchCompleteCellPatch(PC pc, PetscHSetI ht, PetscHSetI cht) 740d71ae5a4SJacob Faibussowitsch { 741b6bb21d1SLawrence Mitchell DM dm, plex; 742bc7fa33aSFlorian Wechsung PC_PATCH *patch = (PC_PATCH *)pc->data; 7431b68eb51SMatthew G. Knepley PetscHashIter hi; 7444bbf5ea8SMatthew G. Knepley PetscInt point; 7454bbf5ea8SMatthew G. Knepley PetscInt *star = NULL, *closure = NULL; 7464c954380SMatthew G. Knepley PetscInt ignoredim, iStart = 0, iEnd = -1, starSize, closureSize, si, ci; 747bc7fa33aSFlorian Wechsung PetscInt *fStar = NULL, *fClosure = NULL; 748bc7fa33aSFlorian Wechsung PetscInt fBegin, fEnd, fsi, fci, fStarSize, fClosureSize; 7494bbf5ea8SMatthew G. Knepley 7504bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 7519566063dSJacob Faibussowitsch PetscCall(PCGetDM(pc, &dm)); 7529566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 753b6bb21d1SLawrence Mitchell dm = plex; 7549566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fBegin, &fEnd)); 7559566063dSJacob Faibussowitsch PetscCall(PCPatchGetIgnoreDim(pc, &ignoredim)); 7569566063dSJacob Faibussowitsch if (ignoredim >= 0) PetscCall(DMPlexGetDepthStratum(dm, ignoredim, &iStart, &iEnd)); 7579566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(cht)); 7581b68eb51SMatthew G. Knepley PetscHashIterBegin(ht, hi); 7591b68eb51SMatthew G. Knepley while (!PetscHashIterAtEnd(ht, hi)) { 7601b68eb51SMatthew G. Knepley PetscHashIterGetKey(ht, hi, point); 7611b68eb51SMatthew G. Knepley PetscHashIterNext(ht, hi); 7624bbf5ea8SMatthew G. Knepley 7634bbf5ea8SMatthew G. Knepley /* Loop over all the cells that this point connects to */ 7649566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, point, PETSC_FALSE, &starSize, &star)); 7655f824522SMatthew G. Knepley for (si = 0; si < starSize * 2; si += 2) { 7664c954380SMatthew G. Knepley const PetscInt ownedpoint = star[si]; 7675f824522SMatthew G. Knepley /* TODO Check for point in cht before running through closure again */ 7684bbf5ea8SMatthew G. Knepley /* now loop over all entities in the closure of that cell */ 7699566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, ownedpoint, PETSC_TRUE, &closureSize, &closure)); 7705f824522SMatthew G. Knepley for (ci = 0; ci < closureSize * 2; ci += 2) { 7714c954380SMatthew G. Knepley const PetscInt seenpoint = closure[ci]; 7725f824522SMatthew G. Knepley if (ignoredim >= 0 && seenpoint >= iStart && seenpoint < iEnd) continue; 7739566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(cht, seenpoint)); 774bc7fa33aSFlorian Wechsung /* Facet integrals couple dofs across facets, so in that case for each of 775f1580f4eSBarry Smith the facets we need to add all dofs on the other side of the facet to 776f1580f4eSBarry Smith the seen dofs. */ 777bc7fa33aSFlorian Wechsung if (patch->usercomputeopintfacet) { 778bc7fa33aSFlorian Wechsung if (fBegin <= seenpoint && seenpoint < fEnd) { 7799566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, seenpoint, PETSC_FALSE, &fStarSize, &fStar)); 780bc7fa33aSFlorian Wechsung for (fsi = 0; fsi < fStarSize * 2; fsi += 2) { 7819566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, fStar[fsi], PETSC_TRUE, &fClosureSize, &fClosure)); 78248a46eb9SPierre Jolivet for (fci = 0; fci < fClosureSize * 2; fci += 2) PetscCall(PetscHSetIAdd(cht, fClosure[fci])); 7839566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, fStar[fsi], PETSC_TRUE, NULL, &fClosure)); 784bc7fa33aSFlorian Wechsung } 7859566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, seenpoint, PETSC_FALSE, NULL, &fStar)); 786bc7fa33aSFlorian Wechsung } 787bc7fa33aSFlorian Wechsung } 7884bbf5ea8SMatthew G. Knepley } 7899566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, ownedpoint, PETSC_TRUE, NULL, &closure)); 7904bbf5ea8SMatthew G. Knepley } 7919566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, point, PETSC_FALSE, NULL, &star)); 7924bbf5ea8SMatthew G. Knepley } 7939566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm)); 7943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7955f824522SMatthew G. Knepley } 7965f824522SMatthew G. Knepley 797d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchGetGlobalDofs(PC pc, PetscSection dofSection[], PetscInt f, PetscBool combined, PetscInt p, PetscInt *dof, PetscInt *off) 798d71ae5a4SJacob Faibussowitsch { 7995f824522SMatthew G. Knepley PetscFunctionBegin; 8005f824522SMatthew G. Knepley if (combined) { 8015f824522SMatthew G. Knepley if (f < 0) { 8029566063dSJacob Faibussowitsch if (dof) PetscCall(PetscSectionGetDof(dofSection[0], p, dof)); 8039566063dSJacob Faibussowitsch if (off) PetscCall(PetscSectionGetOffset(dofSection[0], p, off)); 8045f824522SMatthew G. Knepley } else { 8059566063dSJacob Faibussowitsch if (dof) PetscCall(PetscSectionGetFieldDof(dofSection[0], p, f, dof)); 8069566063dSJacob Faibussowitsch if (off) PetscCall(PetscSectionGetFieldOffset(dofSection[0], p, f, off)); 8075f824522SMatthew G. Knepley } 8085f824522SMatthew G. Knepley } else { 8095f824522SMatthew G. Knepley if (f < 0) { 8105f824522SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 8115f824522SMatthew G. Knepley PetscInt fdof, g; 8125f824522SMatthew G. Knepley 8135f824522SMatthew G. Knepley if (dof) { 8145f824522SMatthew G. Knepley *dof = 0; 8155f824522SMatthew G. Knepley for (g = 0; g < patch->nsubspaces; ++g) { 8169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(dofSection[g], p, &fdof)); 8175f824522SMatthew G. Knepley *dof += fdof; 8185f824522SMatthew G. Knepley } 8195f824522SMatthew G. Knepley } 820624e31c3SLawrence Mitchell if (off) { 821624e31c3SLawrence Mitchell *off = 0; 822624e31c3SLawrence Mitchell for (g = 0; g < patch->nsubspaces; ++g) { 8239566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(dofSection[g], p, &fdof)); 824624e31c3SLawrence Mitchell *off += fdof; 825624e31c3SLawrence Mitchell } 826624e31c3SLawrence Mitchell } 8275f824522SMatthew G. Knepley } else { 8289566063dSJacob Faibussowitsch if (dof) PetscCall(PetscSectionGetDof(dofSection[f], p, dof)); 8299566063dSJacob Faibussowitsch if (off) PetscCall(PetscSectionGetOffset(dofSection[f], p, off)); 8305f824522SMatthew G. Knepley } 8315f824522SMatthew G. Knepley } 8323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8334bbf5ea8SMatthew G. Knepley } 8344bbf5ea8SMatthew G. Knepley 8354bbf5ea8SMatthew G. Knepley /* Given a hash table with a set of topological entities (pts), compute the degrees of 8364bbf5ea8SMatthew G. Knepley freedom in global concatenated numbering on those entities. 8374bbf5ea8SMatthew G. Knepley For Vanka smoothing, this needs to do something special: ignore dofs of the 8384bbf5ea8SMatthew G. Knepley constraint subspace on entities that aren't the base entity we're building the patch 8394bbf5ea8SMatthew G. Knepley around. */ 840d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchGetPointDofs(PC pc, PetscHSetI pts, PetscHSetI dofs, PetscInt base, PetscHSetI *subspaces_to_exclude) 841d71ae5a4SJacob Faibussowitsch { 8425f824522SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 8431b68eb51SMatthew G. Knepley PetscHashIter hi; 8444bbf5ea8SMatthew G. Knepley PetscInt ldof, loff; 8454bbf5ea8SMatthew G. Knepley PetscInt k, p; 8464bbf5ea8SMatthew G. Knepley 8474bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 8489566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(dofs)); 8494bbf5ea8SMatthew G. Knepley for (k = 0; k < patch->nsubspaces; ++k) { 8504bbf5ea8SMatthew G. Knepley PetscInt subspaceOffset = patch->subspaceOffsets[k]; 8514bbf5ea8SMatthew G. Knepley PetscInt bs = patch->bs[k]; 8524bbf5ea8SMatthew G. Knepley PetscInt j, l; 8534bbf5ea8SMatthew G. Knepley 854e4c66b91SPatrick Farrell if (subspaces_to_exclude != NULL) { 855e4c66b91SPatrick Farrell PetscBool should_exclude_k = PETSC_FALSE; 8569566063dSJacob Faibussowitsch PetscCall(PetscHSetIHas(*subspaces_to_exclude, k, &should_exclude_k)); 857e4c66b91SPatrick Farrell if (should_exclude_k) { 8584bbf5ea8SMatthew G. Knepley /* only get this subspace dofs at the base entity, not any others */ 8599566063dSJacob Faibussowitsch PetscCall(PCPatchGetGlobalDofs(pc, patch->dofSection, k, patch->combined, base, &ldof, &loff)); 8604bbf5ea8SMatthew G. Knepley if (0 == ldof) continue; 8614bbf5ea8SMatthew G. Knepley for (j = loff; j < ldof + loff; ++j) { 8624bbf5ea8SMatthew G. Knepley for (l = 0; l < bs; ++l) { 8634bbf5ea8SMatthew G. Knepley PetscInt dof = bs * j + l + subspaceOffset; 8649566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(dofs, dof)); 8654bbf5ea8SMatthew G. Knepley } 8664bbf5ea8SMatthew G. Knepley } 8674bbf5ea8SMatthew G. Knepley continue; /* skip the other dofs of this subspace */ 8684bbf5ea8SMatthew G. Knepley } 869e4c66b91SPatrick Farrell } 8704bbf5ea8SMatthew G. Knepley 8711b68eb51SMatthew G. Knepley PetscHashIterBegin(pts, hi); 8721b68eb51SMatthew G. Knepley while (!PetscHashIterAtEnd(pts, hi)) { 8731b68eb51SMatthew G. Knepley PetscHashIterGetKey(pts, hi, p); 8741b68eb51SMatthew G. Knepley PetscHashIterNext(pts, hi); 8759566063dSJacob Faibussowitsch PetscCall(PCPatchGetGlobalDofs(pc, patch->dofSection, k, patch->combined, p, &ldof, &loff)); 8764bbf5ea8SMatthew G. Knepley if (0 == ldof) continue; 8774bbf5ea8SMatthew G. Knepley for (j = loff; j < ldof + loff; ++j) { 8784bbf5ea8SMatthew G. Knepley for (l = 0; l < bs; ++l) { 8794bbf5ea8SMatthew G. Knepley PetscInt dof = bs * j + l + subspaceOffset; 8809566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(dofs, dof)); 8814bbf5ea8SMatthew G. Knepley } 8824bbf5ea8SMatthew G. Knepley } 8834bbf5ea8SMatthew G. Knepley } 8844bbf5ea8SMatthew G. Knepley } 8853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8864bbf5ea8SMatthew G. Knepley } 8874bbf5ea8SMatthew G. Knepley 8884bbf5ea8SMatthew G. Knepley /* Given two hash tables A and B, compute the keys in B that are not in A, and put them in C */ 889d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchComputeSetDifference_Private(PetscHSetI A, PetscHSetI B, PetscHSetI C) 890d71ae5a4SJacob Faibussowitsch { 8911b68eb51SMatthew G. Knepley PetscHashIter hi; 8921b68eb51SMatthew G. Knepley PetscInt key; 8934bbf5ea8SMatthew G. Knepley PetscBool flg; 8944bbf5ea8SMatthew G. Knepley 8954bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 8969566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(C)); 8971b68eb51SMatthew G. Knepley PetscHashIterBegin(B, hi); 8981b68eb51SMatthew G. Knepley while (!PetscHashIterAtEnd(B, hi)) { 8991b68eb51SMatthew G. Knepley PetscHashIterGetKey(B, hi, key); 9001b68eb51SMatthew G. Knepley PetscHashIterNext(B, hi); 9019566063dSJacob Faibussowitsch PetscCall(PetscHSetIHas(A, key, &flg)); 9029566063dSJacob Faibussowitsch if (!flg) PetscCall(PetscHSetIAdd(C, key)); 9034bbf5ea8SMatthew G. Knepley } 9043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9054bbf5ea8SMatthew G. Knepley } 9064bbf5ea8SMatthew G. Knepley 90704c3f3b8SBarry Smith // PetscClangLinter pragma disable: -fdoc-sowing-chars 9084bbf5ea8SMatthew G. Knepley /* 909f1580f4eSBarry Smith PCPatchCreateCellPatches - create patches. 910f1580f4eSBarry Smith 911f1580f4eSBarry Smith Input Parameter: 912f1580f4eSBarry Smith . dm - The DMPlex object defining the mesh 913f1580f4eSBarry Smith 914f1580f4eSBarry Smith Output Parameters: 915f1580f4eSBarry Smith + cellCounts - Section with counts of cells around each vertex 916f1580f4eSBarry Smith . cells - IS of the cell point indices of cells in each patch 917f1580f4eSBarry Smith . pointCounts - Section with counts of cells around each vertex 918f1580f4eSBarry Smith - point - IS of the cell point indices of cells in each patch 9194bbf5ea8SMatthew G. Knepley */ 920d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchCreateCellPatches(PC pc) 921d71ae5a4SJacob Faibussowitsch { 9224bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 9235f824522SMatthew G. Knepley DMLabel ghost = NULL; 9244bbf5ea8SMatthew G. Knepley DM dm, plex; 92576ce8f1aSJose E. Roman PetscHSetI ht = NULL, cht = NULL; 9260e126c0bSLawrence Mitchell PetscSection cellCounts, pointCounts, intFacetCounts, extFacetCounts; 927eb62eeaaSLawrence Mitchell PetscInt *cellsArray, *pointsArray, *intFacetsArray, *extFacetsArray, *intFacetsToPatchCell; 9280e126c0bSLawrence Mitchell PetscInt numCells, numPoints, numIntFacets, numExtFacets; 9295f824522SMatthew G. Knepley const PetscInt *leaves; 93033cbca70SPatrick Farrell PetscInt nleaves, pStart, pEnd, cStart, cEnd, vStart, vEnd, fStart, fEnd, v; 9315f824522SMatthew G. Knepley PetscBool isFiredrake; 9324bbf5ea8SMatthew G. Knepley 9334bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 9344bbf5ea8SMatthew G. Knepley /* Used to keep track of the cells in the patch. */ 9359566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 9369566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&cht)); 9374bbf5ea8SMatthew G. Knepley 9389566063dSJacob Faibussowitsch PetscCall(PCGetDM(pc, &dm)); 93928b400f6SJacob Faibussowitsch PetscCheck(dm, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONGSTATE, "DM not yet set on patch PC"); 9409566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 941b6bb21d1SLawrence Mitchell dm = plex; 9429566063dSJacob Faibussowitsch PetscCall(DMPlexGetChart(dm, &pStart, &pEnd)); 9439566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 9444bbf5ea8SMatthew G. Knepley 9454bbf5ea8SMatthew G. Knepley if (patch->user_patches) { 9469566063dSJacob Faibussowitsch PetscCall(patch->userpatchconstructionop(pc, &patch->npatch, &patch->userIS, &patch->iterationSet, patch->userpatchconstructctx)); 9479371c9d4SSatish Balay vStart = 0; 9489371c9d4SSatish Balay vEnd = patch->npatch; 949e5b9877fSPatrick Farrell } else if (patch->ctype == PC_PATCH_PARDECOMP) { 9509371c9d4SSatish Balay vStart = 0; 9519371c9d4SSatish Balay vEnd = 1; 9525f824522SMatthew G. Knepley } else if (patch->codim < 0) { 9539566063dSJacob Faibussowitsch if (patch->dim < 0) PetscCall(DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd)); 9549566063dSJacob Faibussowitsch else PetscCall(DMPlexGetDepthStratum(dm, patch->dim, &vStart, &vEnd)); 9559566063dSJacob Faibussowitsch } else PetscCall(DMPlexGetHeightStratum(dm, patch->codim, &vStart, &vEnd)); 9565f824522SMatthew G. Knepley patch->npatch = vEnd - vStart; 9574bbf5ea8SMatthew G. Knepley 9584bbf5ea8SMatthew G. Knepley /* These labels mark the owned points. We only create patches around points that this process owns. */ 9599566063dSJacob Faibussowitsch PetscCall(DMHasLabel(dm, "pyop2_ghost", &isFiredrake)); 9605f824522SMatthew G. Knepley if (isFiredrake) { 9619566063dSJacob Faibussowitsch PetscCall(DMGetLabel(dm, "pyop2_ghost", &ghost)); 9629566063dSJacob Faibussowitsch PetscCall(DMLabelCreateIndex(ghost, pStart, pEnd)); 9635f824522SMatthew G. Knepley } else { 9645f824522SMatthew G. Knepley PetscSF sf; 9655f824522SMatthew G. Knepley 9669566063dSJacob Faibussowitsch PetscCall(DMGetPointSF(dm, &sf)); 9679566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL)); 9685f824522SMatthew G. Knepley nleaves = PetscMax(nleaves, 0); 9695f824522SMatthew G. Knepley } 9704bbf5ea8SMatthew G. Knepley 9719566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->cellCounts)); 9729566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)patch->cellCounts, "Patch Cell Layout")); 9734bbf5ea8SMatthew G. Knepley cellCounts = patch->cellCounts; 9749566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(cellCounts, vStart, vEnd)); 9759566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->pointCounts)); 9769566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)patch->pointCounts, "Patch Point Layout")); 9775f824522SMatthew G. Knepley pointCounts = patch->pointCounts; 9789566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(pointCounts, vStart, vEnd)); 9799566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->extFacetCounts)); 9809566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)patch->extFacetCounts, "Patch Exterior Facet Layout")); 9810e126c0bSLawrence Mitchell extFacetCounts = patch->extFacetCounts; 9829566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(extFacetCounts, vStart, vEnd)); 9839566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->intFacetCounts)); 9849566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)patch->intFacetCounts, "Patch Interior Facet Layout")); 9850e126c0bSLawrence Mitchell intFacetCounts = patch->intFacetCounts; 9869566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(intFacetCounts, vStart, vEnd)); 9875f824522SMatthew G. Knepley /* Count cells and points in the patch surrounding each entity */ 9889566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 9894bbf5ea8SMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 9901b68eb51SMatthew G. Knepley PetscHashIter hi; 9915f824522SMatthew G. Knepley PetscInt chtSize, loc = -1; 9925f824522SMatthew G. Knepley PetscBool flg; 9934bbf5ea8SMatthew G. Knepley 994b525f888SPatrick Farrell if (!patch->user_patches && patch->ctype != PC_PATCH_PARDECOMP) { 9959566063dSJacob Faibussowitsch if (ghost) PetscCall(DMLabelHasPoint(ghost, v, &flg)); 9969371c9d4SSatish Balay else { 9979371c9d4SSatish Balay PetscCall(PetscFindInt(v, nleaves, leaves, &loc)); 9989371c9d4SSatish Balay flg = loc >= 0 ? PETSC_TRUE : PETSC_FALSE; 9999371c9d4SSatish Balay } 10004bbf5ea8SMatthew G. Knepley /* Not an owned entity, don't make a cell patch. */ 10014bbf5ea8SMatthew G. Knepley if (flg) continue; 10024bbf5ea8SMatthew G. Knepley } 10034bbf5ea8SMatthew G. Knepley 10049566063dSJacob Faibussowitsch PetscCall(patch->patchconstructop((void *)patch, dm, v, ht)); 10059566063dSJacob Faibussowitsch PetscCall(PCPatchCompleteCellPatch(pc, ht, cht)); 10069566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(cht, &chtSize)); 10074bbf5ea8SMatthew G. Knepley /* empty patch, continue */ 10084bbf5ea8SMatthew G. Knepley if (chtSize == 0) continue; 10094bbf5ea8SMatthew G. Knepley 10104bbf5ea8SMatthew G. Knepley /* safe because size(cht) > 0 from above */ 10111b68eb51SMatthew G. Knepley PetscHashIterBegin(cht, hi); 10121b68eb51SMatthew G. Knepley while (!PetscHashIterAtEnd(cht, hi)) { 10135f824522SMatthew G. Knepley PetscInt point, pdof; 10144bbf5ea8SMatthew G. Knepley 10151b68eb51SMatthew G. Knepley PetscHashIterGetKey(cht, hi, point); 10160e126c0bSLawrence Mitchell if (fStart <= point && point < fEnd) { 10170e126c0bSLawrence Mitchell const PetscInt *support; 10180e126c0bSLawrence Mitchell PetscInt supportSize, p; 10190e126c0bSLawrence Mitchell PetscBool interior = PETSC_TRUE; 10209566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 10219566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 10220e126c0bSLawrence Mitchell if (supportSize == 1) { 10230e126c0bSLawrence Mitchell interior = PETSC_FALSE; 10240e126c0bSLawrence Mitchell } else { 10250e126c0bSLawrence Mitchell for (p = 0; p < supportSize; p++) { 10260e126c0bSLawrence Mitchell PetscBool found; 10270e126c0bSLawrence Mitchell /* FIXME: can I do this while iterating over cht? */ 10289566063dSJacob Faibussowitsch PetscCall(PetscHSetIHas(cht, support[p], &found)); 10290e126c0bSLawrence Mitchell if (!found) { 10300e126c0bSLawrence Mitchell interior = PETSC_FALSE; 10310e126c0bSLawrence Mitchell break; 10320e126c0bSLawrence Mitchell } 10330e126c0bSLawrence Mitchell } 10340e126c0bSLawrence Mitchell } 10350e126c0bSLawrence Mitchell if (interior) { 10369566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(intFacetCounts, v, 1)); 10370e126c0bSLawrence Mitchell } else { 10389566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(extFacetCounts, v, 1)); 10390e126c0bSLawrence Mitchell } 10400e126c0bSLawrence Mitchell } 10419566063dSJacob Faibussowitsch PetscCall(PCPatchGetGlobalDofs(pc, patch->dofSection, -1, patch->combined, point, &pdof, NULL)); 10429566063dSJacob Faibussowitsch if (pdof) PetscCall(PetscSectionAddDof(pointCounts, v, 1)); 10439566063dSJacob Faibussowitsch if (point >= cStart && point < cEnd) PetscCall(PetscSectionAddDof(cellCounts, v, 1)); 10441b68eb51SMatthew G. Knepley PetscHashIterNext(cht, hi); 10454bbf5ea8SMatthew G. Knepley } 10464bbf5ea8SMatthew G. Knepley } 10479566063dSJacob Faibussowitsch if (isFiredrake) PetscCall(DMLabelDestroyIndex(ghost)); 10484bbf5ea8SMatthew G. Knepley 10499566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(cellCounts)); 10509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(cellCounts, &numCells)); 10519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numCells, &cellsArray)); 10529566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(pointCounts)); 10539566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(pointCounts, &numPoints)); 10549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPoints, &pointsArray)); 10554bbf5ea8SMatthew G. Knepley 10569566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(intFacetCounts)); 10579566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(extFacetCounts)); 10589566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(intFacetCounts, &numIntFacets)); 10599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(extFacetCounts, &numExtFacets)); 10609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numIntFacets, &intFacetsArray)); 10619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numIntFacets * 2, &intFacetsToPatchCell)); 10629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numExtFacets, &extFacetsArray)); 10630e126c0bSLawrence Mitchell 10644bbf5ea8SMatthew G. Knepley /* Now that we know how much space we need, run through again and actually remember the cells. */ 10654bbf5ea8SMatthew G. Knepley for (v = vStart; v < vEnd; v++) { 10661b68eb51SMatthew G. Knepley PetscHashIter hi; 10670e126c0bSLawrence Mitchell PetscInt dof, off, cdof, coff, efdof, efoff, ifdof, ifoff, pdof, n = 0, cn = 0, ifn = 0, efn = 0; 10684bbf5ea8SMatthew G. Knepley 10699566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pointCounts, v, &dof)); 10709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pointCounts, v, &off)); 10719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellCounts, v, &cdof)); 10729566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cellCounts, v, &coff)); 10739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(intFacetCounts, v, &ifdof)); 10749566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(intFacetCounts, v, &ifoff)); 10759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(extFacetCounts, v, &efdof)); 10769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(extFacetCounts, v, &efoff)); 10775f824522SMatthew G. Knepley if (dof <= 0) continue; 10789566063dSJacob Faibussowitsch PetscCall(patch->patchconstructop((void *)patch, dm, v, ht)); 10799566063dSJacob Faibussowitsch PetscCall(PCPatchCompleteCellPatch(pc, ht, cht)); 10801b68eb51SMatthew G. Knepley PetscHashIterBegin(cht, hi); 10811b68eb51SMatthew G. Knepley while (!PetscHashIterAtEnd(cht, hi)) { 10824bbf5ea8SMatthew G. Knepley PetscInt point; 10834bbf5ea8SMatthew G. Knepley 10841b68eb51SMatthew G. Knepley PetscHashIterGetKey(cht, hi, point); 10850e126c0bSLawrence Mitchell if (fStart <= point && point < fEnd) { 10860e126c0bSLawrence Mitchell const PetscInt *support; 10870e126c0bSLawrence Mitchell PetscInt supportSize, p; 10880e126c0bSLawrence Mitchell PetscBool interior = PETSC_TRUE; 10899566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupport(dm, point, &support)); 10909566063dSJacob Faibussowitsch PetscCall(DMPlexGetSupportSize(dm, point, &supportSize)); 10910e126c0bSLawrence Mitchell if (supportSize == 1) { 10920e126c0bSLawrence Mitchell interior = PETSC_FALSE; 10930e126c0bSLawrence Mitchell } else { 10940e126c0bSLawrence Mitchell for (p = 0; p < supportSize; p++) { 10950e126c0bSLawrence Mitchell PetscBool found; 10960e126c0bSLawrence Mitchell /* FIXME: can I do this while iterating over cht? */ 10979566063dSJacob Faibussowitsch PetscCall(PetscHSetIHas(cht, support[p], &found)); 10980e126c0bSLawrence Mitchell if (!found) { 10990e126c0bSLawrence Mitchell interior = PETSC_FALSE; 11000e126c0bSLawrence Mitchell break; 11010e126c0bSLawrence Mitchell } 11020e126c0bSLawrence Mitchell } 11030e126c0bSLawrence Mitchell } 11040e126c0bSLawrence Mitchell if (interior) { 110544b625f7SLawrence Mitchell intFacetsToPatchCell[2 * (ifoff + ifn)] = support[0]; 110644b625f7SLawrence Mitchell intFacetsToPatchCell[2 * (ifoff + ifn) + 1] = support[1]; 11070e126c0bSLawrence Mitchell intFacetsArray[ifoff + ifn++] = point; 11080e126c0bSLawrence Mitchell } else { 11090e126c0bSLawrence Mitchell extFacetsArray[efoff + efn++] = point; 11100e126c0bSLawrence Mitchell } 11110e126c0bSLawrence Mitchell } 11129566063dSJacob Faibussowitsch PetscCall(PCPatchGetGlobalDofs(pc, patch->dofSection, -1, patch->combined, point, &pdof, NULL)); 1113ad540459SPierre Jolivet if (pdof) pointsArray[off + n++] = point; 1114ad540459SPierre Jolivet if (point >= cStart && point < cEnd) cellsArray[coff + cn++] = point; 11151b68eb51SMatthew G. Knepley PetscHashIterNext(cht, hi); 11164bbf5ea8SMatthew G. Knepley } 111763a3b9bcSJacob Faibussowitsch PetscCheck(ifn == ifdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of interior facets in patch %" PetscInt_FMT " is %" PetscInt_FMT ", but should be %" PetscInt_FMT, v, ifn, ifdof); 111863a3b9bcSJacob Faibussowitsch PetscCheck(efn == efdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of exterior facets in patch %" PetscInt_FMT " is %" PetscInt_FMT ", but should be %" PetscInt_FMT, v, efn, efdof); 111963a3b9bcSJacob Faibussowitsch PetscCheck(cn == cdof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of cells in patch %" PetscInt_FMT " is %" PetscInt_FMT ", but should be %" PetscInt_FMT, v, cn, cdof); 112063a3b9bcSJacob Faibussowitsch PetscCheck(n == dof, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number of points in patch %" PetscInt_FMT " is %" PetscInt_FMT ", but should be %" PetscInt_FMT, v, n, dof); 1121eb62eeaaSLawrence Mitchell 1122eb62eeaaSLawrence Mitchell for (ifn = 0; ifn < ifdof; ifn++) { 112344b625f7SLawrence Mitchell PetscInt cell0 = intFacetsToPatchCell[2 * (ifoff + ifn)]; 112444b625f7SLawrence Mitchell PetscInt cell1 = intFacetsToPatchCell[2 * (ifoff + ifn) + 1]; 1125eb62eeaaSLawrence Mitchell PetscBool found0 = PETSC_FALSE, found1 = PETSC_FALSE; 1126eb62eeaaSLawrence Mitchell for (n = 0; n < cdof; n++) { 11277c54fef0SLawrence Mitchell if (!found0 && cell0 == cellsArray[coff + n]) { 1128c3faab33SLawrence Mitchell intFacetsToPatchCell[2 * (ifoff + ifn)] = n; 1129eb62eeaaSLawrence Mitchell found0 = PETSC_TRUE; 1130eb62eeaaSLawrence Mitchell } 11317c54fef0SLawrence Mitchell if (!found1 && cell1 == cellsArray[coff + n]) { 1132c3faab33SLawrence Mitchell intFacetsToPatchCell[2 * (ifoff + ifn) + 1] = n; 113380fc4459SLawrence Mitchell found1 = PETSC_TRUE; 1134eb62eeaaSLawrence Mitchell } 1135eb62eeaaSLawrence Mitchell if (found0 && found1) break; 1136eb62eeaaSLawrence Mitchell } 11377827d75bSBarry Smith PetscCheck(found0 && found1, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Didn't manage to find local point numbers for facet support"); 1138eb62eeaaSLawrence Mitchell } 11394bbf5ea8SMatthew G. Knepley } 11409566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 11419566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&cht)); 11425f824522SMatthew G. Knepley 11439566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numCells, cellsArray, PETSC_OWN_POINTER, &patch->cells)); 11449566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)patch->cells, "Patch Cells")); 11455f824522SMatthew G. Knepley if (patch->viewCells) { 11469566063dSJacob Faibussowitsch PetscCall(ObjectView((PetscObject)patch->cellCounts, patch->viewerCells, patch->formatCells)); 11479566063dSJacob Faibussowitsch PetscCall(ObjectView((PetscObject)patch->cells, patch->viewerCells, patch->formatCells)); 11485f824522SMatthew G. Knepley } 11499566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numIntFacets, intFacetsArray, PETSC_OWN_POINTER, &patch->intFacets)); 11509566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)patch->intFacets, "Patch Interior Facets")); 11519566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, 2 * numIntFacets, intFacetsToPatchCell, PETSC_OWN_POINTER, &patch->intFacetsToPatchCell)); 11529566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)patch->intFacetsToPatchCell, "Patch Interior Facets local support")); 11530e126c0bSLawrence Mitchell if (patch->viewIntFacets) { 11549566063dSJacob Faibussowitsch PetscCall(ObjectView((PetscObject)patch->intFacetCounts, patch->viewerIntFacets, patch->formatIntFacets)); 11559566063dSJacob Faibussowitsch PetscCall(ObjectView((PetscObject)patch->intFacets, patch->viewerIntFacets, patch->formatIntFacets)); 11569566063dSJacob Faibussowitsch PetscCall(ObjectView((PetscObject)patch->intFacetsToPatchCell, patch->viewerIntFacets, patch->formatIntFacets)); 11570e126c0bSLawrence Mitchell } 11589566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numExtFacets, extFacetsArray, PETSC_OWN_POINTER, &patch->extFacets)); 11599566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)patch->extFacets, "Patch Exterior Facets")); 11600e126c0bSLawrence Mitchell if (patch->viewExtFacets) { 11619566063dSJacob Faibussowitsch PetscCall(ObjectView((PetscObject)patch->extFacetCounts, patch->viewerExtFacets, patch->formatExtFacets)); 11629566063dSJacob Faibussowitsch PetscCall(ObjectView((PetscObject)patch->extFacets, patch->viewerExtFacets, patch->formatExtFacets)); 11630e126c0bSLawrence Mitchell } 11649566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numPoints, pointsArray, PETSC_OWN_POINTER, &patch->points)); 11659566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)patch->points, "Patch Points")); 11665f824522SMatthew G. Knepley if (patch->viewPoints) { 11679566063dSJacob Faibussowitsch PetscCall(ObjectView((PetscObject)patch->pointCounts, patch->viewerPoints, patch->formatPoints)); 11689566063dSJacob Faibussowitsch PetscCall(ObjectView((PetscObject)patch->points, patch->viewerPoints, patch->formatPoints)); 11695f824522SMatthew G. Knepley } 11709566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm)); 11713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11724bbf5ea8SMatthew G. Knepley } 11734bbf5ea8SMatthew G. Knepley 11744bbf5ea8SMatthew G. Knepley /* 1175f1580f4eSBarry Smith PCPatchCreateCellPatchDiscretisationInfo - Build the dof maps for cell patches 1176f1580f4eSBarry Smith 1177f1580f4eSBarry Smith Input Parameters: 1178f1580f4eSBarry Smith + dm - The DMPlex object defining the mesh 1179f1580f4eSBarry Smith . cellCounts - Section with counts of cells around each vertex 1180f1580f4eSBarry Smith . cells - IS of the cell point indices of cells in each patch 1181f1580f4eSBarry Smith . cellNumbering - Section mapping plex cell points to Firedrake cell indices. 1182f1580f4eSBarry Smith . nodesPerCell - number of nodes per cell. 1183f1580f4eSBarry Smith - cellNodeMap - map from cells to node indices (nodesPerCell * numCells) 1184f1580f4eSBarry Smith 1185f1580f4eSBarry Smith Output Parameters: 1186f1580f4eSBarry Smith + dofs - IS of local dof numbers of each cell in the patch, where local is a patch local numbering 1187f1580f4eSBarry Smith . gtolCounts - Section with counts of dofs per cell patch 1188f1580f4eSBarry Smith - gtol - IS mapping from global dofs to local dofs for each patch. 11894bbf5ea8SMatthew G. Knepley */ 1190d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchCreateCellPatchDiscretisationInfo(PC pc) 1191d71ae5a4SJacob Faibussowitsch { 11924bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 11934bbf5ea8SMatthew G. Knepley PetscSection cellCounts = patch->cellCounts; 11945f824522SMatthew G. Knepley PetscSection pointCounts = patch->pointCounts; 11950904074fSPatrick Farrell PetscSection gtolCounts, gtolCountsWithArtificial = NULL, gtolCountsWithAll = NULL; 11964bbf5ea8SMatthew G. Knepley IS cells = patch->cells; 11975f824522SMatthew G. Knepley IS points = patch->points; 11984bbf5ea8SMatthew G. Knepley PetscSection cellNumbering = patch->cellNumbering; 11995f824522SMatthew G. Knepley PetscInt Nf = patch->nsubspaces; 12005f824522SMatthew G. Knepley PetscInt numCells, numPoints; 12014bbf5ea8SMatthew G. Knepley PetscInt numDofs; 12020904074fSPatrick Farrell PetscInt numGlobalDofs, numGlobalDofsWithArtificial, numGlobalDofsWithAll; 12034bbf5ea8SMatthew G. Knepley PetscInt totalDofsPerCell = patch->totalDofsPerCell; 12044bbf5ea8SMatthew G. Knepley PetscInt vStart, vEnd, v; 12055f824522SMatthew G. Knepley const PetscInt *cellsArray, *pointsArray; 12064bbf5ea8SMatthew G. Knepley PetscInt *newCellsArray = NULL; 12074bbf5ea8SMatthew G. Knepley PetscInt *dofsArray = NULL; 1208c2e6f3c0SFlorian Wechsung PetscInt *dofsArrayWithArtificial = NULL; 12090904074fSPatrick Farrell PetscInt *dofsArrayWithAll = NULL; 12105f824522SMatthew G. Knepley PetscInt *offsArray = NULL; 1211c2e6f3c0SFlorian Wechsung PetscInt *offsArrayWithArtificial = NULL; 12120904074fSPatrick Farrell PetscInt *offsArrayWithAll = NULL; 12134bbf5ea8SMatthew G. Knepley PetscInt *asmArray = NULL; 1214c2e6f3c0SFlorian Wechsung PetscInt *asmArrayWithArtificial = NULL; 12150904074fSPatrick Farrell PetscInt *asmArrayWithAll = NULL; 12164bbf5ea8SMatthew G. Knepley PetscInt *globalDofsArray = NULL; 1217c2e6f3c0SFlorian Wechsung PetscInt *globalDofsArrayWithArtificial = NULL; 12180904074fSPatrick Farrell PetscInt *globalDofsArrayWithAll = NULL; 12194bbf5ea8SMatthew G. Knepley PetscInt globalIndex = 0; 12204bbf5ea8SMatthew G. Knepley PetscInt key = 0; 12214bbf5ea8SMatthew G. Knepley PetscInt asmKey = 0; 1222b6bb21d1SLawrence Mitchell DM dm = NULL, plex; 1223557beb66SLawrence Mitchell const PetscInt *bcNodes = NULL; 12241b68eb51SMatthew G. Knepley PetscHMapI ht; 1225c2e6f3c0SFlorian Wechsung PetscHMapI htWithArtificial; 12260904074fSPatrick Farrell PetscHMapI htWithAll; 12271b68eb51SMatthew G. Knepley PetscHSetI globalBcs; 1228557beb66SLawrence Mitchell PetscInt numBcs; 12291b68eb51SMatthew G. Knepley PetscHSetI ownedpts, seenpts, owneddofs, seendofs, artificialbcs; 1230cda239d9SMatthew G. Knepley PetscInt pStart, pEnd, p, i; 123110534d48SPatrick Farrell char option[PETSC_MAX_PATH_LEN]; 123239fd2e8aSPatrick Farrell PetscBool isNonlinear; 12334bbf5ea8SMatthew G. Knepley 12344bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 12359566063dSJacob Faibussowitsch PetscCall(PCGetDM(pc, &dm)); 12369566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 1237b6bb21d1SLawrence Mitchell dm = plex; 12384bbf5ea8SMatthew G. Knepley /* dofcounts section is cellcounts section * dofPerCell */ 12399566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(cellCounts, &numCells)); 12409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(patch->pointCounts, &numPoints)); 12414bbf5ea8SMatthew G. Knepley numDofs = numCells * totalDofsPerCell; 12429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numDofs, &dofsArray)); 12439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPoints * Nf, &offsArray)); 12449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numDofs, &asmArray)); 12459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numCells, &newCellsArray)); 12469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(cellCounts, &vStart, &vEnd)); 12479566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->gtolCounts)); 12484bbf5ea8SMatthew G. Knepley gtolCounts = patch->gtolCounts; 12499566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(gtolCounts, vStart, vEnd)); 12509566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)patch->gtolCounts, "Patch Global Index Section")); 12514bbf5ea8SMatthew G. Knepley 1252b6bb21d1SLawrence Mitchell if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) { 12539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPoints * Nf, &offsArrayWithArtificial)); 12549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numDofs, &asmArrayWithArtificial)); 12559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numDofs, &dofsArrayWithArtificial)); 12569566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->gtolCountsWithArtificial)); 1257c2e6f3c0SFlorian Wechsung gtolCountsWithArtificial = patch->gtolCountsWithArtificial; 12589566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(gtolCountsWithArtificial, vStart, vEnd)); 12599566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)patch->gtolCountsWithArtificial, "Patch Global Index Section Including Artificial BCs")); 1260c2e6f3c0SFlorian Wechsung } 1261c2e6f3c0SFlorian Wechsung 12620904074fSPatrick Farrell isNonlinear = patch->isNonlinear; 1263b6bb21d1SLawrence Mitchell if (isNonlinear) { 12649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPoints * Nf, &offsArrayWithAll)); 12659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numDofs, &asmArrayWithAll)); 12669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numDofs, &dofsArrayWithAll)); 12679566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->gtolCountsWithAll)); 12680904074fSPatrick Farrell gtolCountsWithAll = patch->gtolCountsWithAll; 12699566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(gtolCountsWithAll, vStart, vEnd)); 12709566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)patch->gtolCountsWithAll, "Patch Global Index Section Including All BCs")); 12710904074fSPatrick Farrell } 12720904074fSPatrick Farrell 1273557beb66SLawrence Mitchell /* Outside the patch loop, get the dofs that are globally-enforced Dirichlet 1274557beb66SLawrence Mitchell conditions */ 12759566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&globalBcs)); 12769566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->ghostBcNodes, &bcNodes)); 12779566063dSJacob Faibussowitsch PetscCall(ISGetSize(patch->ghostBcNodes, &numBcs)); 12789371c9d4SSatish Balay for (i = 0; i < numBcs; ++i) { PetscCall(PetscHSetIAdd(globalBcs, bcNodes[i])); /* these are already in concatenated numbering */ } 12799566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->ghostBcNodes, &bcNodes)); 12809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->ghostBcNodes)); /* memory optimisation */ 1281557beb66SLawrence Mitchell 1282557beb66SLawrence Mitchell /* Hash tables for artificial BC construction */ 12839566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ownedpts)); 12849566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&seenpts)); 12859566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&owneddofs)); 12869566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&seendofs)); 12879566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&artificialbcs)); 1288557beb66SLawrence Mitchell 12899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(cells, &cellsArray)); 12909566063dSJacob Faibussowitsch PetscCall(ISGetIndices(points, &pointsArray)); 12919566063dSJacob Faibussowitsch PetscCall(PetscHMapICreate(&ht)); 12929566063dSJacob Faibussowitsch PetscCall(PetscHMapICreate(&htWithArtificial)); 12939566063dSJacob Faibussowitsch PetscCall(PetscHMapICreate(&htWithAll)); 12944bbf5ea8SMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 12954bbf5ea8SMatthew G. Knepley PetscInt localIndex = 0; 1296c2e6f3c0SFlorian Wechsung PetscInt localIndexWithArtificial = 0; 12970904074fSPatrick Farrell PetscInt localIndexWithAll = 0; 12984bbf5ea8SMatthew G. Knepley PetscInt dof, off, i, j, k, l; 12994bbf5ea8SMatthew G. Knepley 13009566063dSJacob Faibussowitsch PetscCall(PetscHMapIClear(ht)); 13019566063dSJacob Faibussowitsch PetscCall(PetscHMapIClear(htWithArtificial)); 13029566063dSJacob Faibussowitsch PetscCall(PetscHMapIClear(htWithAll)); 13039566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellCounts, v, &dof)); 13049566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cellCounts, v, &off)); 13054bbf5ea8SMatthew G. Knepley if (dof <= 0) continue; 13064bbf5ea8SMatthew G. Knepley 1307557beb66SLawrence Mitchell /* Calculate the global numbers of the artificial BC dofs here first */ 13089566063dSJacob Faibussowitsch PetscCall(patch->patchconstructop((void *)patch, dm, v, ownedpts)); 13099566063dSJacob Faibussowitsch PetscCall(PCPatchCompleteCellPatch(pc, ownedpts, seenpts)); 13109566063dSJacob Faibussowitsch PetscCall(PCPatchGetPointDofs(pc, ownedpts, owneddofs, v, &patch->subspaces_to_exclude)); 13119566063dSJacob Faibussowitsch PetscCall(PCPatchGetPointDofs(pc, seenpts, seendofs, v, NULL)); 13129566063dSJacob Faibussowitsch PetscCall(PCPatchComputeSetDifference_Private(owneddofs, seendofs, artificialbcs)); 13138135ed82SLawrence Mitchell if (patch->viewPatches) { 13141b68eb51SMatthew G. Knepley PetscHSetI globalbcdofs; 13151b68eb51SMatthew G. Knepley PetscHashIter hi; 13168135ed82SLawrence Mitchell MPI_Comm comm = PetscObjectComm((PetscObject)pc); 13171b68eb51SMatthew G. Knepley 13189566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&globalbcdofs)); 131963a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "Patch %" PetscInt_FMT ": owned dofs:\n", v)); 13201b68eb51SMatthew G. Knepley PetscHashIterBegin(owneddofs, hi); 13211b68eb51SMatthew G. Knepley while (!PetscHashIterAtEnd(owneddofs, hi)) { 13228135ed82SLawrence Mitchell PetscInt globalDof; 13238135ed82SLawrence Mitchell 13241b68eb51SMatthew G. Knepley PetscHashIterGetKey(owneddofs, hi, globalDof); 13251b68eb51SMatthew G. Knepley PetscHashIterNext(owneddofs, hi); 132663a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "%" PetscInt_FMT " ", globalDof)); 13278135ed82SLawrence Mitchell } 13289566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "\n")); 132963a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "Patch %" PetscInt_FMT ": seen dofs:\n", v)); 13301b68eb51SMatthew G. Knepley PetscHashIterBegin(seendofs, hi); 13311b68eb51SMatthew G. Knepley while (!PetscHashIterAtEnd(seendofs, hi)) { 13328135ed82SLawrence Mitchell PetscInt globalDof; 13338135ed82SLawrence Mitchell PetscBool flg; 13348135ed82SLawrence Mitchell 13351b68eb51SMatthew G. Knepley PetscHashIterGetKey(seendofs, hi, globalDof); 13361b68eb51SMatthew G. Knepley PetscHashIterNext(seendofs, hi); 133763a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "%" PetscInt_FMT " ", globalDof)); 13388135ed82SLawrence Mitchell 13399566063dSJacob Faibussowitsch PetscCall(PetscHSetIHas(globalBcs, globalDof, &flg)); 13409566063dSJacob Faibussowitsch if (flg) PetscCall(PetscHSetIAdd(globalbcdofs, globalDof)); 13418135ed82SLawrence Mitchell } 13429566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "\n")); 134363a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "Patch %" PetscInt_FMT ": global BCs:\n", v)); 13449566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(globalbcdofs, &numBcs)); 13458135ed82SLawrence Mitchell if (numBcs > 0) { 13461b68eb51SMatthew G. Knepley PetscHashIterBegin(globalbcdofs, hi); 13471b68eb51SMatthew G. Knepley while (!PetscHashIterAtEnd(globalbcdofs, hi)) { 13488135ed82SLawrence Mitchell PetscInt globalDof; 13491b68eb51SMatthew G. Knepley PetscHashIterGetKey(globalbcdofs, hi, globalDof); 13501b68eb51SMatthew G. Knepley PetscHashIterNext(globalbcdofs, hi); 135163a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "%" PetscInt_FMT " ", globalDof)); 13528135ed82SLawrence Mitchell } 13538135ed82SLawrence Mitchell } 13549566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "\n")); 135563a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "Patch %" PetscInt_FMT ": artificial BCs:\n", v)); 13569566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(artificialbcs, &numBcs)); 13578135ed82SLawrence Mitchell if (numBcs > 0) { 13581b68eb51SMatthew G. Knepley PetscHashIterBegin(artificialbcs, hi); 13591b68eb51SMatthew G. Knepley while (!PetscHashIterAtEnd(artificialbcs, hi)) { 13608135ed82SLawrence Mitchell PetscInt globalDof; 13611b68eb51SMatthew G. Knepley PetscHashIterGetKey(artificialbcs, hi, globalDof); 13621b68eb51SMatthew G. Knepley PetscHashIterNext(artificialbcs, hi); 136363a3b9bcSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "%" PetscInt_FMT " ", globalDof)); 13648135ed82SLawrence Mitchell } 13658135ed82SLawrence Mitchell } 13669566063dSJacob Faibussowitsch PetscCall(PetscSynchronizedPrintf(comm, "\n\n")); 13679566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&globalbcdofs)); 13688135ed82SLawrence Mitchell } 13694bbf5ea8SMatthew G. Knepley for (k = 0; k < patch->nsubspaces; ++k) { 13704bbf5ea8SMatthew G. Knepley const PetscInt *cellNodeMap = patch->cellNodeMap[k]; 13714bbf5ea8SMatthew G. Knepley PetscInt nodesPerCell = patch->nodesPerCell[k]; 13724bbf5ea8SMatthew G. Knepley PetscInt subspaceOffset = patch->subspaceOffsets[k]; 13734bbf5ea8SMatthew G. Knepley PetscInt bs = patch->bs[k]; 13744bbf5ea8SMatthew G. Knepley 13754bbf5ea8SMatthew G. Knepley for (i = off; i < off + dof; ++i) { 13764bbf5ea8SMatthew G. Knepley /* Walk over the cells in this patch. */ 13774bbf5ea8SMatthew G. Knepley const PetscInt c = cellsArray[i]; 13785f824522SMatthew G. Knepley PetscInt cell = c; 13794bbf5ea8SMatthew G. Knepley 13805f824522SMatthew G. Knepley /* TODO Change this to an IS */ 13815f824522SMatthew G. Knepley if (cellNumbering) { 13829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellNumbering, c, &cell)); 138363a3b9bcSJacob Faibussowitsch PetscCheck(cell > 0, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_OUTOFRANGE, "Cell %" PetscInt_FMT " doesn't appear in cell numbering map", c); 13849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cellNumbering, c, &cell)); 13855f824522SMatthew G. Knepley } 13864bbf5ea8SMatthew G. Knepley newCellsArray[i] = cell; 13874bbf5ea8SMatthew G. Knepley for (j = 0; j < nodesPerCell; ++j) { 13884bbf5ea8SMatthew G. Knepley /* For each global dof, map it into contiguous local storage. */ 13894bbf5ea8SMatthew G. Knepley const PetscInt globalDof = cellNodeMap[cell * nodesPerCell + j] * bs + subspaceOffset; 13904bbf5ea8SMatthew G. Knepley /* finally, loop over block size */ 13914bbf5ea8SMatthew G. Knepley for (l = 0; l < bs; ++l) { 13921b68eb51SMatthew G. Knepley PetscInt localDof; 13931b68eb51SMatthew G. Knepley PetscBool isGlobalBcDof, isArtificialBcDof; 13944bbf5ea8SMatthew G. Knepley 1395557beb66SLawrence Mitchell /* first, check if this is either a globally enforced or locally enforced BC dof */ 13969566063dSJacob Faibussowitsch PetscCall(PetscHSetIHas(globalBcs, globalDof + l, &isGlobalBcDof)); 13979566063dSJacob Faibussowitsch PetscCall(PetscHSetIHas(artificialbcs, globalDof + l, &isArtificialBcDof)); 1398557beb66SLawrence Mitchell 1399557beb66SLawrence Mitchell /* if it's either, don't ever give it a local dof number */ 14001b68eb51SMatthew G. Knepley if (isGlobalBcDof || isArtificialBcDof) { 1401c2e6f3c0SFlorian Wechsung dofsArray[globalIndex] = -1; /* don't use this in assembly in this patch */ 1402557beb66SLawrence Mitchell } else { 14039566063dSJacob Faibussowitsch PetscCall(PetscHMapIGet(ht, globalDof + l, &localDof)); 14044bbf5ea8SMatthew G. Knepley if (localDof == -1) { 14054bbf5ea8SMatthew G. Knepley localDof = localIndex++; 14069566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(ht, globalDof + l, localDof)); 14074bbf5ea8SMatthew G. Knepley } 140863a3b9bcSJacob Faibussowitsch PetscCheck(globalIndex < numDofs, PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "Found more dofs %" PetscInt_FMT " than expected %" PetscInt_FMT, globalIndex + 1, numDofs); 14094bbf5ea8SMatthew G. Knepley /* And store. */ 1410c2e6f3c0SFlorian Wechsung dofsArray[globalIndex] = localDof; 14114bbf5ea8SMatthew G. Knepley } 1412c2e6f3c0SFlorian Wechsung 14130904074fSPatrick Farrell if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) { 1414c2e6f3c0SFlorian Wechsung if (isGlobalBcDof) { 1415e047a90bSFlorian Wechsung dofsArrayWithArtificial[globalIndex] = -1; /* don't use this in assembly in this patch */ 1416c2e6f3c0SFlorian Wechsung } else { 14179566063dSJacob Faibussowitsch PetscCall(PetscHMapIGet(htWithArtificial, globalDof + l, &localDof)); 1418c2e6f3c0SFlorian Wechsung if (localDof == -1) { 1419c2e6f3c0SFlorian Wechsung localDof = localIndexWithArtificial++; 14209566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(htWithArtificial, globalDof + l, localDof)); 1421c2e6f3c0SFlorian Wechsung } 142263a3b9bcSJacob Faibussowitsch PetscCheck(globalIndex < numDofs, PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "Found more dofs %" PetscInt_FMT " than expected %" PetscInt_FMT, globalIndex + 1, numDofs); 1423c2e6f3c0SFlorian Wechsung /* And store.*/ 1424c2e6f3c0SFlorian Wechsung dofsArrayWithArtificial[globalIndex] = localDof; 1425c2e6f3c0SFlorian Wechsung } 1426c2e6f3c0SFlorian Wechsung } 14270904074fSPatrick Farrell 14280904074fSPatrick Farrell if (isNonlinear) { 14290904074fSPatrick Farrell /* Build the dofmap for the function space with _all_ dofs, 14300904074fSPatrick Farrell including those in any kind of boundary condition */ 14319566063dSJacob Faibussowitsch PetscCall(PetscHMapIGet(htWithAll, globalDof + l, &localDof)); 14320904074fSPatrick Farrell if (localDof == -1) { 14330904074fSPatrick Farrell localDof = localIndexWithAll++; 14349566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(htWithAll, globalDof + l, localDof)); 14350904074fSPatrick Farrell } 143663a3b9bcSJacob Faibussowitsch PetscCheck(globalIndex < numDofs, PETSC_COMM_WORLD, PETSC_ERR_ARG_OUTOFRANGE, "Found more dofs %" PetscInt_FMT " than expected %" PetscInt_FMT, globalIndex + 1, numDofs); 14370904074fSPatrick Farrell /* And store.*/ 14380904074fSPatrick Farrell dofsArrayWithAll[globalIndex] = localDof; 14390904074fSPatrick Farrell } 1440c2e6f3c0SFlorian Wechsung globalIndex++; 14414bbf5ea8SMatthew G. Knepley } 14424bbf5ea8SMatthew G. Knepley } 14434bbf5ea8SMatthew G. Knepley } 1444557beb66SLawrence Mitchell } 14454bbf5ea8SMatthew G. Knepley /* How many local dofs in this patch? */ 14460904074fSPatrick Farrell if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) { 14479566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(htWithArtificial, &dof)); 14489566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(gtolCountsWithArtificial, v, dof)); 1449c2e6f3c0SFlorian Wechsung } 14500904074fSPatrick Farrell if (isNonlinear) { 14519566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(htWithAll, &dof)); 14529566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(gtolCountsWithAll, v, dof)); 14530904074fSPatrick Farrell } 14549566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ht, &dof)); 14559566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(gtolCounts, v, dof)); 14564bbf5ea8SMatthew G. Knepley } 1457b6bb21d1SLawrence Mitchell 14589566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm)); 145963a3b9bcSJacob Faibussowitsch PetscCheck(globalIndex == numDofs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Expected number of dofs (%" PetscInt_FMT ") doesn't match found number (%" PetscInt_FMT ")", numDofs, globalIndex); 14609566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(gtolCounts)); 14619566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(gtolCounts, &numGlobalDofs)); 14629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGlobalDofs, &globalDofsArray)); 14634bbf5ea8SMatthew G. Knepley 14640904074fSPatrick Farrell if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) { 14659566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(gtolCountsWithArtificial)); 14669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(gtolCountsWithArtificial, &numGlobalDofsWithArtificial)); 14679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGlobalDofsWithArtificial, &globalDofsArrayWithArtificial)); 1468c2e6f3c0SFlorian Wechsung } 14690904074fSPatrick Farrell if (isNonlinear) { 14709566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(gtolCountsWithAll)); 14719566063dSJacob Faibussowitsch PetscCall(PetscSectionGetStorageSize(gtolCountsWithAll, &numGlobalDofsWithAll)); 14729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numGlobalDofsWithAll, &globalDofsArrayWithAll)); 14730904074fSPatrick Farrell } 14744bbf5ea8SMatthew G. Knepley /* Now populate the global to local map. This could be merged into the above loop if we were willing to deal with reallocs. */ 14754bbf5ea8SMatthew G. Knepley for (v = vStart; v < vEnd; ++v) { 14761b68eb51SMatthew G. Knepley PetscHashIter hi; 14775f824522SMatthew G. Knepley PetscInt dof, off, Np, ooff, i, j, k, l; 14784bbf5ea8SMatthew G. Knepley 14799566063dSJacob Faibussowitsch PetscCall(PetscHMapIClear(ht)); 14809566063dSJacob Faibussowitsch PetscCall(PetscHMapIClear(htWithArtificial)); 14819566063dSJacob Faibussowitsch PetscCall(PetscHMapIClear(htWithAll)); 14829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(cellCounts, v, &dof)); 14839566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(cellCounts, v, &off)); 14849566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(pointCounts, v, &Np)); 14859566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(pointCounts, v, &ooff)); 14864bbf5ea8SMatthew G. Knepley if (dof <= 0) continue; 14874bbf5ea8SMatthew G. Knepley 14884bbf5ea8SMatthew G. Knepley for (k = 0; k < patch->nsubspaces; ++k) { 14894bbf5ea8SMatthew G. Knepley const PetscInt *cellNodeMap = patch->cellNodeMap[k]; 14904bbf5ea8SMatthew G. Knepley PetscInt nodesPerCell = patch->nodesPerCell[k]; 14914bbf5ea8SMatthew G. Knepley PetscInt subspaceOffset = patch->subspaceOffsets[k]; 14924bbf5ea8SMatthew G. Knepley PetscInt bs = patch->bs[k]; 1493d490bb3dSLawrence Mitchell PetscInt goff; 14944bbf5ea8SMatthew G. Knepley 14954bbf5ea8SMatthew G. Knepley for (i = off; i < off + dof; ++i) { 14964bbf5ea8SMatthew G. Knepley /* Reconstruct mapping of global-to-local on this patch. */ 14974bbf5ea8SMatthew G. Knepley const PetscInt c = cellsArray[i]; 14985f824522SMatthew G. Knepley PetscInt cell = c; 14994bbf5ea8SMatthew G. Knepley 15009566063dSJacob Faibussowitsch if (cellNumbering) PetscCall(PetscSectionGetOffset(cellNumbering, c, &cell)); 15014bbf5ea8SMatthew G. Knepley for (j = 0; j < nodesPerCell; ++j) { 15024bbf5ea8SMatthew G. Knepley for (l = 0; l < bs; ++l) { 15035f824522SMatthew G. Knepley const PetscInt globalDof = cellNodeMap[cell * nodesPerCell + j] * bs + l + subspaceOffset; 1504c2e6f3c0SFlorian Wechsung const PetscInt localDof = dofsArray[key]; 15059566063dSJacob Faibussowitsch if (localDof >= 0) PetscCall(PetscHMapISet(ht, globalDof, localDof)); 15060904074fSPatrick Farrell if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) { 1507c2e6f3c0SFlorian Wechsung const PetscInt localDofWithArtificial = dofsArrayWithArtificial[key]; 150848a46eb9SPierre Jolivet if (localDofWithArtificial >= 0) PetscCall(PetscHMapISet(htWithArtificial, globalDof, localDofWithArtificial)); 1509c2e6f3c0SFlorian Wechsung } 15100904074fSPatrick Farrell if (isNonlinear) { 15110904074fSPatrick Farrell const PetscInt localDofWithAll = dofsArrayWithAll[key]; 151248a46eb9SPierre Jolivet if (localDofWithAll >= 0) PetscCall(PetscHMapISet(htWithAll, globalDof, localDofWithAll)); 15130904074fSPatrick Farrell } 1514c2e6f3c0SFlorian Wechsung key++; 15154bbf5ea8SMatthew G. Knepley } 15164bbf5ea8SMatthew G. Knepley } 15174bbf5ea8SMatthew G. Knepley } 1518557beb66SLawrence Mitchell 15194bbf5ea8SMatthew G. Knepley /* Shove it in the output data structure. */ 15209566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gtolCounts, v, &goff)); 15211b68eb51SMatthew G. Knepley PetscHashIterBegin(ht, hi); 15221b68eb51SMatthew G. Knepley while (!PetscHashIterAtEnd(ht, hi)) { 15234bbf5ea8SMatthew G. Knepley PetscInt globalDof, localDof; 15244bbf5ea8SMatthew G. Knepley 15251b68eb51SMatthew G. Knepley PetscHashIterGetKey(ht, hi, globalDof); 15261b68eb51SMatthew G. Knepley PetscHashIterGetVal(ht, hi, localDof); 15274bbf5ea8SMatthew G. Knepley if (globalDof >= 0) globalDofsArray[goff + localDof] = globalDof; 15281b68eb51SMatthew G. Knepley PetscHashIterNext(ht, hi); 15294bbf5ea8SMatthew G. Knepley } 15305f824522SMatthew G. Knepley 15310904074fSPatrick Farrell if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) { 15329566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gtolCountsWithArtificial, v, &goff)); 1533c2e6f3c0SFlorian Wechsung PetscHashIterBegin(htWithArtificial, hi); 1534c2e6f3c0SFlorian Wechsung while (!PetscHashIterAtEnd(htWithArtificial, hi)) { 1535c2e6f3c0SFlorian Wechsung PetscInt globalDof, localDof; 1536c2e6f3c0SFlorian Wechsung PetscHashIterGetKey(htWithArtificial, hi, globalDof); 1537c2e6f3c0SFlorian Wechsung PetscHashIterGetVal(htWithArtificial, hi, localDof); 1538c2e6f3c0SFlorian Wechsung if (globalDof >= 0) globalDofsArrayWithArtificial[goff + localDof] = globalDof; 1539c2e6f3c0SFlorian Wechsung PetscHashIterNext(htWithArtificial, hi); 1540c2e6f3c0SFlorian Wechsung } 1541c2e6f3c0SFlorian Wechsung } 15420904074fSPatrick Farrell if (isNonlinear) { 15439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(gtolCountsWithAll, v, &goff)); 15440904074fSPatrick Farrell PetscHashIterBegin(htWithAll, hi); 15450904074fSPatrick Farrell while (!PetscHashIterAtEnd(htWithAll, hi)) { 15460904074fSPatrick Farrell PetscInt globalDof, localDof; 15470904074fSPatrick Farrell PetscHashIterGetKey(htWithAll, hi, globalDof); 15480904074fSPatrick Farrell PetscHashIterGetVal(htWithAll, hi, localDof); 15490904074fSPatrick Farrell if (globalDof >= 0) globalDofsArrayWithAll[goff + localDof] = globalDof; 15500904074fSPatrick Farrell PetscHashIterNext(htWithAll, hi); 15510904074fSPatrick Farrell } 15520904074fSPatrick Farrell } 1553c2e6f3c0SFlorian Wechsung 15545f824522SMatthew G. Knepley for (p = 0; p < Np; ++p) { 15555f824522SMatthew G. Knepley const PetscInt point = pointsArray[ooff + p]; 15565f824522SMatthew G. Knepley PetscInt globalDof, localDof; 15575f824522SMatthew G. Knepley 15589566063dSJacob Faibussowitsch PetscCall(PCPatchGetGlobalDofs(pc, patch->dofSection, k, patch->combined, point, NULL, &globalDof)); 15599566063dSJacob Faibussowitsch PetscCall(PetscHMapIGet(ht, globalDof, &localDof)); 15605f824522SMatthew G. Knepley offsArray[(ooff + p) * Nf + k] = localDof; 15610904074fSPatrick Farrell if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) { 15629566063dSJacob Faibussowitsch PetscCall(PetscHMapIGet(htWithArtificial, globalDof, &localDof)); 1563c2e6f3c0SFlorian Wechsung offsArrayWithArtificial[(ooff + p) * Nf + k] = localDof; 1564c2e6f3c0SFlorian Wechsung } 15650904074fSPatrick Farrell if (isNonlinear) { 15669566063dSJacob Faibussowitsch PetscCall(PetscHMapIGet(htWithAll, globalDof, &localDof)); 15670904074fSPatrick Farrell offsArrayWithAll[(ooff + p) * Nf + k] = localDof; 15680904074fSPatrick Farrell } 15695f824522SMatthew G. Knepley } 15704bbf5ea8SMatthew G. Knepley } 15714bbf5ea8SMatthew G. Knepley 15729566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&globalBcs)); 15739566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ownedpts)); 15749566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&seenpts)); 15759566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&owneddofs)); 15769566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&seendofs)); 15779566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&artificialbcs)); 1578557beb66SLawrence Mitchell 15794bbf5ea8SMatthew G. Knepley /* At this point, we have a hash table ht built that maps globalDof -> localDof. 15804bbf5ea8SMatthew G. Knepley We need to create the dof table laid out cellwise first, then by subspace, 15814bbf5ea8SMatthew G. Knepley as the assembler assembles cell-wise and we need to stuff the different 15824bbf5ea8SMatthew G. Knepley contributions of the different function spaces to the right places. So we loop 15834bbf5ea8SMatthew G. Knepley over cells, then over subspaces. */ 15844bbf5ea8SMatthew G. Knepley if (patch->nsubspaces > 1) { /* for nsubspaces = 1, data we need is already in dofsArray */ 15854bbf5ea8SMatthew G. Knepley for (i = off; i < off + dof; ++i) { 15864bbf5ea8SMatthew G. Knepley const PetscInt c = cellsArray[i]; 15875f824522SMatthew G. Knepley PetscInt cell = c; 15884bbf5ea8SMatthew G. Knepley 15899566063dSJacob Faibussowitsch if (cellNumbering) PetscCall(PetscSectionGetOffset(cellNumbering, c, &cell)); 15904bbf5ea8SMatthew G. Knepley for (k = 0; k < patch->nsubspaces; ++k) { 15914bbf5ea8SMatthew G. Knepley const PetscInt *cellNodeMap = patch->cellNodeMap[k]; 15924bbf5ea8SMatthew G. Knepley PetscInt nodesPerCell = patch->nodesPerCell[k]; 15934bbf5ea8SMatthew G. Knepley PetscInt subspaceOffset = patch->subspaceOffsets[k]; 15944bbf5ea8SMatthew G. Knepley PetscInt bs = patch->bs[k]; 15954bbf5ea8SMatthew G. Knepley 15964bbf5ea8SMatthew G. Knepley for (j = 0; j < nodesPerCell; ++j) { 15974bbf5ea8SMatthew G. Knepley for (l = 0; l < bs; ++l) { 15985f824522SMatthew G. Knepley const PetscInt globalDof = cellNodeMap[cell * nodesPerCell + j] * bs + l + subspaceOffset; 15994bbf5ea8SMatthew G. Knepley PetscInt localDof; 16004bbf5ea8SMatthew G. Knepley 16019566063dSJacob Faibussowitsch PetscCall(PetscHMapIGet(ht, globalDof, &localDof)); 1602557beb66SLawrence Mitchell /* If it's not in the hash table, i.e. is a BC dof, 16031b68eb51SMatthew G. Knepley then the PetscHSetIMap above gives -1, which matches 1604557beb66SLawrence Mitchell exactly the convention for PETSc's matrix assembly to 1605557beb66SLawrence Mitchell ignore the dof. So we don't need to do anything here */ 1606c2e6f3c0SFlorian Wechsung asmArray[asmKey] = localDof; 16070904074fSPatrick Farrell if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) { 16089566063dSJacob Faibussowitsch PetscCall(PetscHMapIGet(htWithArtificial, globalDof, &localDof)); 1609c2e6f3c0SFlorian Wechsung asmArrayWithArtificial[asmKey] = localDof; 1610c2e6f3c0SFlorian Wechsung } 16110904074fSPatrick Farrell if (isNonlinear) { 16129566063dSJacob Faibussowitsch PetscCall(PetscHMapIGet(htWithAll, globalDof, &localDof)); 16130904074fSPatrick Farrell asmArrayWithAll[asmKey] = localDof; 16140904074fSPatrick Farrell } 1615c2e6f3c0SFlorian Wechsung asmKey++; 16164bbf5ea8SMatthew G. Knepley } 16174bbf5ea8SMatthew G. Knepley } 16184bbf5ea8SMatthew G. Knepley } 16194bbf5ea8SMatthew G. Knepley } 16204bbf5ea8SMatthew G. Knepley } 16214bbf5ea8SMatthew G. Knepley } 1622c2e6f3c0SFlorian Wechsung if (1 == patch->nsubspaces) { 16239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(asmArray, dofsArray, numDofs)); 162448a46eb9SPierre Jolivet if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) PetscCall(PetscArraycpy(asmArrayWithArtificial, dofsArrayWithArtificial, numDofs)); 16251baa6e33SBarry Smith if (isNonlinear) PetscCall(PetscArraycpy(asmArrayWithAll, dofsArrayWithAll, numDofs)); 1626c2e6f3c0SFlorian Wechsung } 16274bbf5ea8SMatthew G. Knepley 16289566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ht)); 16299566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&htWithArtificial)); 16309566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&htWithAll)); 16319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(cells, &cellsArray)); 16329566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(points, &pointsArray)); 16339566063dSJacob Faibussowitsch PetscCall(PetscFree(dofsArray)); 163448a46eb9SPierre Jolivet if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) PetscCall(PetscFree(dofsArrayWithArtificial)); 16351baa6e33SBarry Smith if (isNonlinear) PetscCall(PetscFree(dofsArrayWithAll)); 16365f824522SMatthew G. Knepley /* Create placeholder section for map from points to patch dofs */ 16379566063dSJacob Faibussowitsch PetscCall(PetscSectionCreate(PETSC_COMM_SELF, &patch->patchSection)); 16389566063dSJacob Faibussowitsch PetscCall(PetscSectionSetNumFields(patch->patchSection, patch->nsubspaces)); 16391e5fa6bbSLawrence Mitchell if (patch->combined) { 16401e5fa6bbSLawrence Mitchell PetscInt numFields; 16419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(patch->dofSection[0], &numFields)); 164263a3b9bcSJacob Faibussowitsch PetscCheck(numFields == patch->nsubspaces, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONG, "Mismatch between number of section fields %" PetscInt_FMT " and number of subspaces %" PetscInt_FMT, numFields, patch->nsubspaces); 16439566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(patch->dofSection[0], &pStart, &pEnd)); 16449566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(patch->patchSection, pStart, pEnd)); 16455f824522SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 16465f824522SMatthew G. Knepley PetscInt dof, fdof, f; 16475f824522SMatthew G. Knepley 16489566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->dofSection[0], p, &dof)); 16499566063dSJacob Faibussowitsch PetscCall(PetscSectionSetDof(patch->patchSection, p, dof)); 16505f824522SMatthew G. Knepley for (f = 0; f < patch->nsubspaces; ++f) { 16519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(patch->dofSection[0], p, f, &fdof)); 16529566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(patch->patchSection, p, f, fdof)); 16535f824522SMatthew G. Knepley } 16541e5fa6bbSLawrence Mitchell } 16551e5fa6bbSLawrence Mitchell } else { 16561e5fa6bbSLawrence Mitchell PetscInt pStartf, pEndf, f; 1657*1690c2aeSBarry Smith pStart = PETSC_INT_MAX; 1658*1690c2aeSBarry Smith pEnd = PETSC_INT_MIN; 16591e5fa6bbSLawrence Mitchell for (f = 0; f < patch->nsubspaces; ++f) { 16609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(patch->dofSection[f], &pStartf, &pEndf)); 16611e5fa6bbSLawrence Mitchell pStart = PetscMin(pStart, pStartf); 16621e5fa6bbSLawrence Mitchell pEnd = PetscMax(pEnd, pEndf); 16631e5fa6bbSLawrence Mitchell } 16649566063dSJacob Faibussowitsch PetscCall(PetscSectionSetChart(patch->patchSection, pStart, pEnd)); 16651e5fa6bbSLawrence Mitchell for (f = 0; f < patch->nsubspaces; ++f) { 16669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(patch->dofSection[f], &pStartf, &pEndf)); 16671e5fa6bbSLawrence Mitchell for (p = pStartf; p < pEndf; ++p) { 16681e5fa6bbSLawrence Mitchell PetscInt fdof; 16699566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->dofSection[f], p, &fdof)); 16709566063dSJacob Faibussowitsch PetscCall(PetscSectionAddDof(patch->patchSection, p, fdof)); 16719566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldDof(patch->patchSection, p, f, fdof)); 1672bdd9e0cdSPatrick Farrell } 1673bdd9e0cdSPatrick Farrell } 16745f824522SMatthew G. Knepley } 16759566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUp(patch->patchSection)); 16769566063dSJacob Faibussowitsch PetscCall(PetscSectionSetUseFieldOffsets(patch->patchSection, PETSC_TRUE)); 16774bbf5ea8SMatthew G. Knepley /* Replace cell indices with firedrake-numbered ones. */ 16789566063dSJacob Faibussowitsch PetscCall(ISGeneralSetIndices(cells, numCells, (const PetscInt *)newCellsArray, PETSC_OWN_POINTER)); 16799566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGlobalDofs, globalDofsArray, PETSC_OWN_POINTER, &patch->gtol)); 16809566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)patch->gtol, "Global Indices")); 16819566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_g2l_view", patch->classname)); 16829566063dSJacob Faibussowitsch PetscCall(PetscSectionViewFromOptions(patch->gtolCounts, (PetscObject)pc, option)); 16839566063dSJacob Faibussowitsch PetscCall(ISViewFromOptions(patch->gtol, (PetscObject)pc, option)); 16849566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numDofs, asmArray, PETSC_OWN_POINTER, &patch->dofs)); 16859566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numPoints * Nf, offsArray, PETSC_OWN_POINTER, &patch->offs)); 16860904074fSPatrick Farrell if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) { 16879566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGlobalDofsWithArtificial, globalDofsArrayWithArtificial, PETSC_OWN_POINTER, &patch->gtolWithArtificial)); 16889566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numDofs, asmArrayWithArtificial, PETSC_OWN_POINTER, &patch->dofsWithArtificial)); 16899566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numPoints * Nf, offsArrayWithArtificial, PETSC_OWN_POINTER, &patch->offsWithArtificial)); 1690c2e6f3c0SFlorian Wechsung } 16910904074fSPatrick Farrell if (isNonlinear) { 16929566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numGlobalDofsWithAll, globalDofsArrayWithAll, PETSC_OWN_POINTER, &patch->gtolWithAll)); 16939566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numDofs, asmArrayWithAll, PETSC_OWN_POINTER, &patch->dofsWithAll)); 16949566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numPoints * Nf, offsArrayWithAll, PETSC_OWN_POINTER, &patch->offsWithAll)); 16950904074fSPatrick Farrell } 16963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16974bbf5ea8SMatthew G. Knepley } 16984bbf5ea8SMatthew G. Knepley 1699d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchCreateMatrix_Private(PC pc, PetscInt point, Mat *mat, PetscBool withArtificial) 1700d71ae5a4SJacob Faibussowitsch { 17014bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 17024bbf5ea8SMatthew G. Knepley PetscBool flg; 17034bbf5ea8SMatthew G. Knepley PetscInt csize, rsize; 17044bbf5ea8SMatthew G. Knepley const char *prefix = NULL; 17054bbf5ea8SMatthew G. Knepley 17064bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 1707c2e6f3c0SFlorian Wechsung if (withArtificial) { 1708e047a90bSFlorian Wechsung /* would be nice if we could create a rectangular matrix of size numDofsWithArtificial x numDofs here */ 17099d4fc724SLawrence Mitchell PetscInt pStart; 17109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(patch->gtolCountsWithArtificial, &pStart, NULL)); 17119566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->gtolCountsWithArtificial, point + pStart, &rsize)); 17129d4fc724SLawrence Mitchell csize = rsize; 1713ff201f6aSFlorian Wechsung } else { 17149d4fc724SLawrence Mitchell PetscInt pStart; 17159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(patch->gtolCounts, &pStart, NULL)); 17169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->gtolCounts, point + pStart, &rsize)); 17179d4fc724SLawrence Mitchell csize = rsize; 1718c2e6f3c0SFlorian Wechsung } 1719c2e6f3c0SFlorian Wechsung 17209566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, mat)); 17219566063dSJacob Faibussowitsch PetscCall(PCGetOptionsPrefix(pc, &prefix)); 17229566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(*mat, prefix)); 17239566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(*mat, "pc_patch_sub_")); 17249566063dSJacob Faibussowitsch if (patch->sub_mat_type) PetscCall(MatSetType(*mat, patch->sub_mat_type)); 17259566063dSJacob Faibussowitsch else if (!patch->sub_mat_type) PetscCall(MatSetType(*mat, MATDENSE)); 17269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, rsize, csize, rsize, csize)); 17279566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)*mat, MATDENSE, &flg)); 17289566063dSJacob Faibussowitsch if (!flg) PetscCall(PetscObjectTypeCompare((PetscObject)*mat, MATSEQDENSE, &flg)); 17294bbf5ea8SMatthew G. Knepley /* Sparse patch matrices */ 17304bbf5ea8SMatthew G. Knepley if (!flg) { 17314bbf5ea8SMatthew G. Knepley PetscBT bt; 17324bbf5ea8SMatthew G. Knepley PetscInt *dnnz = NULL; 17334bbf5ea8SMatthew G. Knepley const PetscInt *dofsArray = NULL; 17344bbf5ea8SMatthew G. Knepley PetscInt pStart, pEnd, ncell, offset, c, i, j; 17354bbf5ea8SMatthew G. Knepley 1736c2e6f3c0SFlorian Wechsung if (withArtificial) { 17379566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->dofsWithArtificial, &dofsArray)); 1738ff201f6aSFlorian Wechsung } else { 17399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->dofs, &dofsArray)); 1740c2e6f3c0SFlorian Wechsung } 17419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(patch->cellCounts, &pStart, &pEnd)); 17424bbf5ea8SMatthew G. Knepley point += pStart; 174363a3b9bcSJacob Faibussowitsch PetscCheck(point < pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Operator point %" PetscInt_FMT " not in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, pStart, pEnd); 17449566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->cellCounts, point, &ncell)); 17459566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->cellCounts, point, &offset)); 17469566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PC_Patch_Prealloc, pc, 0, 0, 0)); 1747b2866507SPatrick Farrell /* A PetscBT uses N^2 bits to store the sparsity pattern on a 17484bbf5ea8SMatthew G. Knepley * patch. This is probably OK if the patches are not too big, 1749b2866507SPatrick Farrell * but uses too much memory. We therefore switch based on rsize. */ 1750b2866507SPatrick Farrell if (rsize < 3000) { /* FIXME: I picked this switch value out of my hat */ 1751d63cebbaSPatrick Farrell PetscScalar *zeroes; 1752d63cebbaSPatrick Farrell PetscInt rows; 1753d63cebbaSPatrick Farrell 17549566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(rsize, &dnnz)); 17559566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(rsize * rsize, &bt)); 17564bbf5ea8SMatthew G. Knepley for (c = 0; c < ncell; ++c) { 17574bbf5ea8SMatthew G. Knepley const PetscInt *idx = dofsArray + (offset + c) * patch->totalDofsPerCell; 17584bbf5ea8SMatthew G. Knepley for (i = 0; i < patch->totalDofsPerCell; ++i) { 17594bbf5ea8SMatthew G. Knepley const PetscInt row = idx[i]; 1760557beb66SLawrence Mitchell if (row < 0) continue; 17614bbf5ea8SMatthew G. Knepley for (j = 0; j < patch->totalDofsPerCell; ++j) { 17624bbf5ea8SMatthew G. Knepley const PetscInt col = idx[j]; 17634bbf5ea8SMatthew G. Knepley const PetscInt key = row * rsize + col; 1764557beb66SLawrence Mitchell if (col < 0) continue; 17654bbf5ea8SMatthew G. Knepley if (!PetscBTLookupSet(bt, key)) ++dnnz[row]; 17664bbf5ea8SMatthew G. Knepley } 17674bbf5ea8SMatthew G. Knepley } 17684bbf5ea8SMatthew G. Knepley } 1769d63cebbaSPatrick Farrell 1770d63cebbaSPatrick Farrell if (patch->usercomputeopintfacet) { 1771d63cebbaSPatrick Farrell const PetscInt *intFacetsArray = NULL; 1772d63cebbaSPatrick Farrell PetscInt i, numIntFacets, intFacetOffset; 1773d63cebbaSPatrick Farrell const PetscInt *facetCells = NULL; 1774d63cebbaSPatrick Farrell 17759566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->intFacetCounts, point, &numIntFacets)); 17769566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->intFacetCounts, point, &intFacetOffset)); 17779566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->intFacetsToPatchCell, &facetCells)); 17789566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->intFacets, &intFacetsArray)); 1779d63cebbaSPatrick Farrell for (i = 0; i < numIntFacets; i++) { 1780d63cebbaSPatrick Farrell const PetscInt cell0 = facetCells[2 * (intFacetOffset + i) + 0]; 1781d63cebbaSPatrick Farrell const PetscInt cell1 = facetCells[2 * (intFacetOffset + i) + 1]; 1782d63cebbaSPatrick Farrell PetscInt celli, cellj; 1783d63cebbaSPatrick Farrell 1784d63cebbaSPatrick Farrell for (celli = 0; celli < patch->totalDofsPerCell; celli++) { 1785d63cebbaSPatrick Farrell const PetscInt row = dofsArray[(offset + cell0) * patch->totalDofsPerCell + celli]; 1786b5c64f08SPatrick Farrell if (row < 0) continue; 1787d63cebbaSPatrick Farrell for (cellj = 0; cellj < patch->totalDofsPerCell; cellj++) { 1788d63cebbaSPatrick Farrell const PetscInt col = dofsArray[(offset + cell1) * patch->totalDofsPerCell + cellj]; 1789d63cebbaSPatrick Farrell const PetscInt key = row * rsize + col; 1790d63cebbaSPatrick Farrell if (col < 0) continue; 1791d63cebbaSPatrick Farrell if (!PetscBTLookupSet(bt, key)) ++dnnz[row]; 1792d63cebbaSPatrick Farrell } 1793d63cebbaSPatrick Farrell } 1794d63cebbaSPatrick Farrell 1795d63cebbaSPatrick Farrell for (celli = 0; celli < patch->totalDofsPerCell; celli++) { 1796d63cebbaSPatrick Farrell const PetscInt row = dofsArray[(offset + cell1) * patch->totalDofsPerCell + celli]; 1797b5c64f08SPatrick Farrell if (row < 0) continue; 1798d63cebbaSPatrick Farrell for (cellj = 0; cellj < patch->totalDofsPerCell; cellj++) { 1799d63cebbaSPatrick Farrell const PetscInt col = dofsArray[(offset + cell0) * patch->totalDofsPerCell + cellj]; 1800d63cebbaSPatrick Farrell const PetscInt key = row * rsize + col; 1801d63cebbaSPatrick Farrell if (col < 0) continue; 1802d63cebbaSPatrick Farrell if (!PetscBTLookupSet(bt, key)) ++dnnz[row]; 1803d63cebbaSPatrick Farrell } 1804d63cebbaSPatrick Farrell } 1805d63cebbaSPatrick Farrell } 1806d63cebbaSPatrick Farrell } 18079566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 18089566063dSJacob Faibussowitsch PetscCall(MatXAIJSetPreallocation(*mat, 1, dnnz, NULL, NULL, NULL)); 18099566063dSJacob Faibussowitsch PetscCall(PetscFree(dnnz)); 1810d63cebbaSPatrick Farrell 18119566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(patch->totalDofsPerCell * patch->totalDofsPerCell, &zeroes)); 1812d63cebbaSPatrick Farrell for (c = 0; c < ncell; ++c) { 1813d63cebbaSPatrick Farrell const PetscInt *idx = &dofsArray[(offset + c) * patch->totalDofsPerCell]; 18149566063dSJacob Faibussowitsch PetscCall(MatSetValues(*mat, patch->totalDofsPerCell, idx, patch->totalDofsPerCell, idx, zeroes, INSERT_VALUES)); 1815d63cebbaSPatrick Farrell } 18169566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(*mat, &rows, NULL)); 181748a46eb9SPierre Jolivet for (i = 0; i < rows; ++i) PetscCall(MatSetValues(*mat, 1, &i, 1, &i, zeroes, INSERT_VALUES)); 1818d63cebbaSPatrick Farrell 1819d63cebbaSPatrick Farrell if (patch->usercomputeopintfacet) { 1820d63cebbaSPatrick Farrell const PetscInt *intFacetsArray = NULL; 1821d63cebbaSPatrick Farrell PetscInt i, numIntFacets, intFacetOffset; 1822d63cebbaSPatrick Farrell const PetscInt *facetCells = NULL; 1823d63cebbaSPatrick Farrell 18249566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->intFacetCounts, point, &numIntFacets)); 18259566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->intFacetCounts, point, &intFacetOffset)); 18269566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->intFacetsToPatchCell, &facetCells)); 18279566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->intFacets, &intFacetsArray)); 1828d63cebbaSPatrick Farrell for (i = 0; i < numIntFacets; i++) { 1829d63cebbaSPatrick Farrell const PetscInt cell0 = facetCells[2 * (intFacetOffset + i) + 0]; 1830d63cebbaSPatrick Farrell const PetscInt cell1 = facetCells[2 * (intFacetOffset + i) + 1]; 1831d63cebbaSPatrick Farrell const PetscInt *cell0idx = &dofsArray[(offset + cell0) * patch->totalDofsPerCell]; 1832d63cebbaSPatrick Farrell const PetscInt *cell1idx = &dofsArray[(offset + cell1) * patch->totalDofsPerCell]; 18339566063dSJacob Faibussowitsch PetscCall(MatSetValues(*mat, patch->totalDofsPerCell, cell0idx, patch->totalDofsPerCell, cell1idx, zeroes, INSERT_VALUES)); 18349566063dSJacob Faibussowitsch PetscCall(MatSetValues(*mat, patch->totalDofsPerCell, cell1idx, patch->totalDofsPerCell, cell0idx, zeroes, INSERT_VALUES)); 1835d63cebbaSPatrick Farrell } 1836d63cebbaSPatrick Farrell } 1837d63cebbaSPatrick Farrell 18389566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 18399566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 1840d63cebbaSPatrick Farrell 18419566063dSJacob Faibussowitsch PetscCall(PetscFree(zeroes)); 1842d63cebbaSPatrick Farrell 1843b2866507SPatrick Farrell } else { /* rsize too big, use MATPREALLOCATOR */ 1844b2866507SPatrick Farrell Mat preallocator; 1845b2866507SPatrick Farrell PetscScalar *vals; 1846b2866507SPatrick Farrell 18479566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(patch->totalDofsPerCell * patch->totalDofsPerCell, &vals)); 18489566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &preallocator)); 18499566063dSJacob Faibussowitsch PetscCall(MatSetType(preallocator, MATPREALLOCATOR)); 18509566063dSJacob Faibussowitsch PetscCall(MatSetSizes(preallocator, rsize, rsize, rsize, rsize)); 18519566063dSJacob Faibussowitsch PetscCall(MatSetUp(preallocator)); 185211bcd083SPatrick Farrell 1853b2866507SPatrick Farrell for (c = 0; c < ncell; ++c) { 1854b2866507SPatrick Farrell const PetscInt *idx = dofsArray + (offset + c) * patch->totalDofsPerCell; 18559566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, patch->totalDofsPerCell, idx, patch->totalDofsPerCell, idx, vals, INSERT_VALUES)); 1856b2866507SPatrick Farrell } 185711bcd083SPatrick Farrell 185811bcd083SPatrick Farrell if (patch->usercomputeopintfacet) { 185911bcd083SPatrick Farrell const PetscInt *intFacetsArray = NULL; 186011bcd083SPatrick Farrell PetscInt i, numIntFacets, intFacetOffset; 186111bcd083SPatrick Farrell const PetscInt *facetCells = NULL; 186211bcd083SPatrick Farrell 18639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->intFacetCounts, point, &numIntFacets)); 18649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->intFacetCounts, point, &intFacetOffset)); 18659566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->intFacetsToPatchCell, &facetCells)); 18669566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->intFacets, &intFacetsArray)); 186711bcd083SPatrick Farrell for (i = 0; i < numIntFacets; i++) { 186811bcd083SPatrick Farrell const PetscInt cell0 = facetCells[2 * (intFacetOffset + i) + 0]; 186911bcd083SPatrick Farrell const PetscInt cell1 = facetCells[2 * (intFacetOffset + i) + 1]; 187011bcd083SPatrick Farrell const PetscInt *cell0idx = &dofsArray[(offset + cell0) * patch->totalDofsPerCell]; 187111bcd083SPatrick Farrell const PetscInt *cell1idx = &dofsArray[(offset + cell1) * patch->totalDofsPerCell]; 18729566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, patch->totalDofsPerCell, cell0idx, patch->totalDofsPerCell, cell1idx, vals, INSERT_VALUES)); 18739566063dSJacob Faibussowitsch PetscCall(MatSetValues(preallocator, patch->totalDofsPerCell, cell1idx, patch->totalDofsPerCell, cell0idx, vals, INSERT_VALUES)); 187411bcd083SPatrick Farrell } 187511bcd083SPatrick Farrell } 187611bcd083SPatrick Farrell 18779566063dSJacob Faibussowitsch PetscCall(PetscFree(vals)); 18789566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(preallocator, MAT_FINAL_ASSEMBLY)); 18799566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(preallocator, MAT_FINAL_ASSEMBLY)); 18809566063dSJacob Faibussowitsch PetscCall(MatPreallocatorPreallocate(preallocator, PETSC_TRUE, *mat)); 18819566063dSJacob Faibussowitsch PetscCall(MatDestroy(&preallocator)); 1882b2866507SPatrick Farrell } 18839566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PC_Patch_Prealloc, pc, 0, 0, 0)); 1884fe117d09SFlorian Wechsung if (withArtificial) { 18859566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->dofsWithArtificial, &dofsArray)); 1886fe117d09SFlorian Wechsung } else { 18879566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->dofs, &dofsArray)); 18884bbf5ea8SMatthew G. Knepley } 1889fe117d09SFlorian Wechsung } 18909566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 18913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18924bbf5ea8SMatthew G. Knepley } 18934bbf5ea8SMatthew G. Knepley 1894d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchComputeFunction_DMPlex_Private(PC pc, PetscInt patchNum, Vec x, Vec F, IS cellIS, PetscInt n, const PetscInt *l2p, const PetscInt *l2pWithAll, void *ctx) 1895d71ae5a4SJacob Faibussowitsch { 189692d50984SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 1897b6bb21d1SLawrence Mitchell DM dm, plex; 189892d50984SMatthew G. Knepley PetscSection s; 189992d50984SMatthew G. Knepley const PetscInt *parray, *oarray; 190092d50984SMatthew G. Knepley PetscInt Nf = patch->nsubspaces, Np, poff, p, f; 190192d50984SMatthew G. Knepley 190292d50984SMatthew G. Knepley PetscFunctionBegin; 190328b400f6SJacob Faibussowitsch PetscCheck(!patch->precomputeElementTensors, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONGSTATE, "Precomputing element tensors not implemented with DMPlex compute operator"); 19049566063dSJacob Faibussowitsch PetscCall(PCGetDM(pc, &dm)); 19059566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 1906b6bb21d1SLawrence Mitchell dm = plex; 19079566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 190892d50984SMatthew G. Knepley /* Set offset into patch */ 19099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->pointCounts, patchNum, &Np)); 19109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->pointCounts, patchNum, &poff)); 19119566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->points, &parray)); 19129566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->offs, &oarray)); 191392d50984SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 191492d50984SMatthew G. Knepley for (p = 0; p < Np; ++p) { 191592d50984SMatthew G. Knepley const PetscInt point = parray[poff + p]; 191692d50984SMatthew G. Knepley PetscInt dof; 191792d50984SMatthew G. Knepley 19189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(patch->patchSection, point, f, &dof)); 19199566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldOffset(patch->patchSection, point, f, oarray[(poff + p) * Nf + f])); 19209566063dSJacob Faibussowitsch if (patch->nsubspaces == 1) PetscCall(PetscSectionSetOffset(patch->patchSection, point, oarray[(poff + p) * Nf + f])); 19219566063dSJacob Faibussowitsch else PetscCall(PetscSectionSetOffset(patch->patchSection, point, -1)); 192292d50984SMatthew G. Knepley } 192392d50984SMatthew G. Knepley } 19249566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->points, &parray)); 19259566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->offs, &oarray)); 19269566063dSJacob Faibussowitsch if (patch->viewSection) PetscCall(ObjectView((PetscObject)patch->patchSection, patch->viewerSection, patch->formatSection)); 19279566063dSJacob Faibussowitsch PetscCall(DMPlexComputeResidual_Patch_Internal(dm, patch->patchSection, cellIS, 0.0, x, NULL, F, ctx)); 19289566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm)); 19293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 193092d50984SMatthew G. Knepley } 193192d50984SMatthew G. Knepley 1932d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchComputeFunction_Internal(PC pc, Vec x, Vec F, PetscInt point) 1933d71ae5a4SJacob Faibussowitsch { 193492d50984SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 193592d50984SMatthew G. Knepley const PetscInt *dofsArray; 19360904074fSPatrick Farrell const PetscInt *dofsArrayWithAll; 193792d50984SMatthew G. Knepley const PetscInt *cellsArray; 193892d50984SMatthew G. Knepley PetscInt ncell, offset, pStart, pEnd; 193992d50984SMatthew G. Knepley 194092d50984SMatthew G. Knepley PetscFunctionBegin; 19419566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PC_Patch_ComputeOp, pc, 0, 0, 0)); 1942ef1023bdSBarry Smith PetscCheck(patch->usercomputeop, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PCPatchSetComputeOperator() to set callback"); 19439566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->dofs, &dofsArray)); 19449566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->dofsWithAll, &dofsArrayWithAll)); 19459566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->cells, &cellsArray)); 19469566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(patch->cellCounts, &pStart, &pEnd)); 194792d50984SMatthew G. Knepley 194892d50984SMatthew G. Knepley point += pStart; 194963a3b9bcSJacob Faibussowitsch PetscCheck(point < pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Operator point %" PetscInt_FMT " not in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, pStart, pEnd); 195092d50984SMatthew G. Knepley 19519566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->cellCounts, point, &ncell)); 19529566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->cellCounts, point, &offset)); 195392d50984SMatthew G. Knepley if (ncell <= 0) { 19549566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PC_Patch_ComputeOp, pc, 0, 0, 0)); 19553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 195692d50984SMatthew G. Knepley } 19579566063dSJacob Faibussowitsch PetscCall(VecSet(F, 0.0)); 195892d50984SMatthew G. Knepley /* Cannot reuse the same IS because the geometry info is being cached in it */ 19599566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncell, cellsArray + offset, PETSC_USE_POINTER, &patch->cellIS)); 1960792fecdfSBarry Smith PetscCallBack("PCPatch callback", patch->usercomputef(pc, point, x, F, patch->cellIS, ncell * patch->totalDofsPerCell, dofsArray + offset * patch->totalDofsPerCell, dofsArrayWithAll + offset * patch->totalDofsPerCell, patch->usercomputefctx)); 19619566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->cellIS)); 19629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->dofs, &dofsArray)); 19639566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->dofsWithAll, &dofsArrayWithAll)); 19649566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->cells, &cellsArray)); 196592d50984SMatthew G. Knepley if (patch->viewMatrix) { 196692d50984SMatthew G. Knepley char name[PETSC_MAX_PATH_LEN]; 196792d50984SMatthew G. Knepley 196863a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(name, PETSC_MAX_PATH_LEN - 1, "Patch vector for Point %" PetscInt_FMT, point)); 19699566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)F, name)); 19709566063dSJacob Faibussowitsch PetscCall(ObjectView((PetscObject)F, patch->viewerMatrix, patch->formatMatrix)); 197192d50984SMatthew G. Knepley } 19729566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PC_Patch_ComputeOp, pc, 0, 0, 0)); 19733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 197492d50984SMatthew G. Knepley } 197592d50984SMatthew G. Knepley 1976d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchComputeOperator_DMPlex_Private(PC pc, PetscInt patchNum, Vec x, Mat J, IS cellIS, PetscInt n, const PetscInt *l2p, const PetscInt *l2pWithAll, void *ctx) 1977d71ae5a4SJacob Faibussowitsch { 19785f824522SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 1979b6bb21d1SLawrence Mitchell DM dm, plex; 19805f824522SMatthew G. Knepley PetscSection s; 19815f824522SMatthew G. Knepley const PetscInt *parray, *oarray; 19825f824522SMatthew G. Knepley PetscInt Nf = patch->nsubspaces, Np, poff, p, f; 19835f824522SMatthew G. Knepley 19845f824522SMatthew G. Knepley PetscFunctionBegin; 19859566063dSJacob Faibussowitsch PetscCall(PCGetDM(pc, &dm)); 19869566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 1987b6bb21d1SLawrence Mitchell dm = plex; 19889566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 19895f824522SMatthew G. Knepley /* Set offset into patch */ 19909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->pointCounts, patchNum, &Np)); 19919566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->pointCounts, patchNum, &poff)); 19929566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->points, &parray)); 19939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->offs, &oarray)); 19945f824522SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 19955f824522SMatthew G. Knepley for (p = 0; p < Np; ++p) { 19965f824522SMatthew G. Knepley const PetscInt point = parray[poff + p]; 19975f824522SMatthew G. Knepley PetscInt dof; 19985f824522SMatthew G. Knepley 19999566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(patch->patchSection, point, f, &dof)); 20009566063dSJacob Faibussowitsch PetscCall(PetscSectionSetFieldOffset(patch->patchSection, point, f, oarray[(poff + p) * Nf + f])); 20019566063dSJacob Faibussowitsch if (patch->nsubspaces == 1) PetscCall(PetscSectionSetOffset(patch->patchSection, point, oarray[(poff + p) * Nf + f])); 20029566063dSJacob Faibussowitsch else PetscCall(PetscSectionSetOffset(patch->patchSection, point, -1)); 20035f824522SMatthew G. Knepley } 20045f824522SMatthew G. Knepley } 20059566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->points, &parray)); 20069566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->offs, &oarray)); 20079566063dSJacob Faibussowitsch if (patch->viewSection) PetscCall(ObjectView((PetscObject)patch->patchSection, patch->viewerSection, patch->formatSection)); 20085f824522SMatthew G. Knepley /* TODO Shut off MatViewFromOptions() in MatAssemblyEnd() here */ 20099566063dSJacob Faibussowitsch PetscCall(DMPlexComputeJacobian_Patch_Internal(dm, patch->patchSection, patch->patchSection, cellIS, 0.0, 0.0, x, NULL, J, J, ctx)); 20109566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm)); 20113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20125f824522SMatthew G. Knepley } 20135f824522SMatthew G. Knepley 2014a685ae26SLawrence Mitchell /* This function zeros mat on entry */ 2015d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatchComputeOperator_Internal(PC pc, Vec x, Mat mat, PetscInt point, PetscBool withArtificial) 2016d71ae5a4SJacob Faibussowitsch { 20174bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 20184bbf5ea8SMatthew G. Knepley const PetscInt *dofsArray; 20190904074fSPatrick Farrell const PetscInt *dofsArrayWithAll = NULL; 20204bbf5ea8SMatthew G. Knepley const PetscInt *cellsArray; 2021eb62eeaaSLawrence Mitchell PetscInt ncell, offset, pStart, pEnd, numIntFacets, intFacetOffset; 20224d04e9f1SPatrick Farrell PetscBool isNonlinear; 20234bbf5ea8SMatthew G. Knepley 20244bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 20259566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PC_Patch_ComputeOp, pc, 0, 0, 0)); 2026debbdec3SPatrick Farrell isNonlinear = patch->isNonlinear; 2027ef1023bdSBarry Smith PetscCheck(patch->usercomputeop, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PCPatchSetComputeOperator() to set callback"); 2028c2e6f3c0SFlorian Wechsung if (withArtificial) { 20299566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->dofsWithArtificial, &dofsArray)); 2030c2e6f3c0SFlorian Wechsung } else { 20319566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->dofs, &dofsArray)); 2032c2e6f3c0SFlorian Wechsung } 203348a46eb9SPierre Jolivet if (isNonlinear) PetscCall(ISGetIndices(patch->dofsWithAll, &dofsArrayWithAll)); 20349566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->cells, &cellsArray)); 20359566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(patch->cellCounts, &pStart, &pEnd)); 20364bbf5ea8SMatthew G. Knepley 20374bbf5ea8SMatthew G. Knepley point += pStart; 203863a3b9bcSJacob Faibussowitsch PetscCheck(point < pEnd, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Operator point %" PetscInt_FMT " not in [%" PetscInt_FMT ", %" PetscInt_FMT ")", point, pStart, pEnd); 20394bbf5ea8SMatthew G. Knepley 20409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->cellCounts, point, &ncell)); 20419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->cellCounts, point, &offset)); 20424bbf5ea8SMatthew G. Knepley if (ncell <= 0) { 20439566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PC_Patch_ComputeOp, pc, 0, 0, 0)); 20443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20454bbf5ea8SMatthew G. Knepley } 20469566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat)); 2047fa84ea4cSLawrence Mitchell if (patch->precomputeElementTensors) { 2048fa84ea4cSLawrence Mitchell PetscInt i; 2049fa84ea4cSLawrence Mitchell PetscInt ndof = patch->totalDofsPerCell; 2050fa84ea4cSLawrence Mitchell const PetscScalar *elementTensors; 2051fa84ea4cSLawrence Mitchell 20529566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(patch->cellMats, &elementTensors)); 2053fa84ea4cSLawrence Mitchell for (i = 0; i < ncell; i++) { 2054fa84ea4cSLawrence Mitchell const PetscInt cell = cellsArray[i + offset]; 2055fa84ea4cSLawrence Mitchell const PetscInt *idx = dofsArray + (offset + i) * ndof; 2056fe988be2SFlorian Wechsung const PetscScalar *v = elementTensors + patch->precomputedTensorLocations[cell] * ndof * ndof; 20579566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat, ndof, idx, ndof, idx, v, ADD_VALUES)); 2058fa84ea4cSLawrence Mitchell } 20599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(patch->cellMats, &elementTensors)); 20609566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 20619566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 2062fa84ea4cSLawrence Mitchell } else { 20632aa6f319SMatthew G. Knepley /* Cannot reuse the same IS because the geometry info is being cached in it */ 20649566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncell, cellsArray + offset, PETSC_USE_POINTER, &patch->cellIS)); 20659371c9d4SSatish Balay PetscCallBack("PCPatch callback", 2066de0a9f35SPierre Jolivet patch->usercomputeop(pc, point, x, mat, patch->cellIS, ncell * patch->totalDofsPerCell, dofsArray + offset * patch->totalDofsPerCell, PetscSafePointerPlusOffset(dofsArrayWithAll, offset * patch->totalDofsPerCell), patch->usercomputeopctx)); 2067fa84ea4cSLawrence Mitchell } 206859109abcSLawrence Mitchell if (patch->usercomputeopintfacet) { 20699566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->intFacetCounts, point, &numIntFacets)); 20709566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->intFacetCounts, point, &intFacetOffset)); 2071eb62eeaaSLawrence Mitchell if (numIntFacets > 0) { 2072eb62eeaaSLawrence Mitchell /* For each interior facet, grab the two cells (in local numbering, and concatenate dof numberings for those cells) */ 2073eb62eeaaSLawrence Mitchell PetscInt *facetDofs = NULL, *facetDofsWithAll = NULL; 2074eb62eeaaSLawrence Mitchell const PetscInt *intFacetsArray = NULL; 2075eb62eeaaSLawrence Mitchell PetscInt idx = 0; 2076eb62eeaaSLawrence Mitchell PetscInt i, c, d; 2077de2d1767SPatrick Farrell PetscInt fStart; 2078b6bb21d1SLawrence Mitchell DM dm, plex; 2079eb62eeaaSLawrence Mitchell IS facetIS = NULL; 2080eb62eeaaSLawrence Mitchell const PetscInt *facetCells = NULL; 20817a50e09dSPatrick Farrell 20829566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->intFacetsToPatchCell, &facetCells)); 20839566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->intFacets, &intFacetsArray)); 20849566063dSJacob Faibussowitsch PetscCall(PCGetDM(pc, &dm)); 20859566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 2086b6bb21d1SLawrence Mitchell dm = plex; 20879566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, NULL)); 2088eb62eeaaSLawrence Mitchell /* FIXME: Pull this malloc out. */ 20899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * patch->totalDofsPerCell * numIntFacets, &facetDofs)); 209048a46eb9SPierre Jolivet if (dofsArrayWithAll) PetscCall(PetscMalloc1(2 * patch->totalDofsPerCell * numIntFacets, &facetDofsWithAll)); 2091f98464cbSLawrence Mitchell if (patch->precomputeElementTensors) { 2092f98464cbSLawrence Mitchell PetscInt nFacetDof = 2 * patch->totalDofsPerCell; 2093f98464cbSLawrence Mitchell const PetscScalar *elementTensors; 2094f98464cbSLawrence Mitchell 20959566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(patch->intFacetMats, &elementTensors)); 2096f98464cbSLawrence Mitchell 2097f98464cbSLawrence Mitchell for (i = 0; i < numIntFacets; i++) { 2098f98464cbSLawrence Mitchell const PetscInt facet = intFacetsArray[i + intFacetOffset]; 2099de2d1767SPatrick Farrell const PetscScalar *v = elementTensors + patch->precomputedIntFacetTensorLocations[facet - fStart] * nFacetDof * nFacetDof; 2100f98464cbSLawrence Mitchell idx = 0; 2101f98464cbSLawrence Mitchell /* 2102f1580f4eSBarry Smith 0--1 2103f1580f4eSBarry Smith |\-| 2104f1580f4eSBarry Smith |+\| 2105f1580f4eSBarry Smith 2--3 2106f1580f4eSBarry Smith [0, 2, 3, 0, 1, 3] 2107f98464cbSLawrence Mitchell */ 2108f98464cbSLawrence Mitchell for (c = 0; c < 2; c++) { 2109f98464cbSLawrence Mitchell const PetscInt cell = facetCells[2 * (intFacetOffset + i) + c]; 2110f98464cbSLawrence Mitchell for (d = 0; d < patch->totalDofsPerCell; d++) { 2111f98464cbSLawrence Mitchell facetDofs[idx] = dofsArray[(offset + cell) * patch->totalDofsPerCell + d]; 2112f98464cbSLawrence Mitchell idx++; 2113f98464cbSLawrence Mitchell } 2114f98464cbSLawrence Mitchell } 21159566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat, nFacetDof, facetDofs, nFacetDof, facetDofs, v, ADD_VALUES)); 2116f98464cbSLawrence Mitchell } 21179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(patch->intFacetMats, &elementTensors)); 2118f98464cbSLawrence Mitchell } else { 2119eb62eeaaSLawrence Mitchell /* 2120f1580f4eSBarry Smith 0--1 2121f1580f4eSBarry Smith |\-| 2122f1580f4eSBarry Smith |+\| 2123f1580f4eSBarry Smith 2--3 2124f1580f4eSBarry Smith [0, 2, 3, 0, 1, 3] 2125eb62eeaaSLawrence Mitchell */ 2126eb62eeaaSLawrence Mitchell for (i = 0; i < numIntFacets; i++) { 2127eb62eeaaSLawrence Mitchell for (c = 0; c < 2; c++) { 2128eb62eeaaSLawrence Mitchell const PetscInt cell = facetCells[2 * (intFacetOffset + i) + c]; 2129eb62eeaaSLawrence Mitchell for (d = 0; d < patch->totalDofsPerCell; d++) { 2130eb62eeaaSLawrence Mitchell facetDofs[idx] = dofsArray[(offset + cell) * patch->totalDofsPerCell + d]; 2131ad540459SPierre Jolivet if (dofsArrayWithAll) facetDofsWithAll[idx] = dofsArrayWithAll[(offset + cell) * patch->totalDofsPerCell + d]; 2132eb62eeaaSLawrence Mitchell idx++; 2133eb62eeaaSLawrence Mitchell } 2134eb62eeaaSLawrence Mitchell } 2135eb62eeaaSLawrence Mitchell } 21369566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numIntFacets, intFacetsArray + intFacetOffset, PETSC_USE_POINTER, &facetIS)); 21379566063dSJacob Faibussowitsch PetscCall(patch->usercomputeopintfacet(pc, point, x, mat, facetIS, 2 * numIntFacets * patch->totalDofsPerCell, facetDofs, facetDofsWithAll, patch->usercomputeopintfacetctx)); 21389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&facetIS)); 2139f98464cbSLawrence Mitchell } 21409566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->intFacetsToPatchCell, &facetCells)); 21419566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->intFacets, &intFacetsArray)); 21429566063dSJacob Faibussowitsch PetscCall(PetscFree(facetDofs)); 21439566063dSJacob Faibussowitsch PetscCall(PetscFree(facetDofsWithAll)); 21449566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm)); 2145eb62eeaaSLawrence Mitchell } 214659109abcSLawrence Mitchell } 21476710cc29SPatrick Farrell 21489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 21499566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 21506710cc29SPatrick Farrell 2151c73d2cf6SLawrence Mitchell if (!(withArtificial || isNonlinear) && patch->denseinverse) { 2152c73d2cf6SLawrence Mitchell MatFactorInfo info; 2153c73d2cf6SLawrence Mitchell PetscBool flg; 21549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATSEQDENSE, &flg)); 215528b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONGSTATE, "Invalid Mat type for dense inverse"); 21569566063dSJacob Faibussowitsch PetscCall(MatFactorInfoInitialize(&info)); 21579566063dSJacob Faibussowitsch PetscCall(MatLUFactor(mat, NULL, NULL, &info)); 21589566063dSJacob Faibussowitsch PetscCall(MatSeqDenseInvertFactors_Private(mat)); 2159c73d2cf6SLawrence Mitchell } 21609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->cellIS)); 21614d04e9f1SPatrick Farrell if (withArtificial) { 21629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->dofsWithArtificial, &dofsArray)); 2163c2e6f3c0SFlorian Wechsung } else { 21649566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->dofs, &dofsArray)); 2165c2e6f3c0SFlorian Wechsung } 216648a46eb9SPierre Jolivet if (isNonlinear) PetscCall(ISRestoreIndices(patch->dofsWithAll, &dofsArrayWithAll)); 21679566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->cells, &cellsArray)); 21682aa6f319SMatthew G. Knepley if (patch->viewMatrix) { 21692aa6f319SMatthew G. Knepley char name[PETSC_MAX_PATH_LEN]; 21702aa6f319SMatthew G. Knepley 217163a3b9bcSJacob Faibussowitsch PetscCall(PetscSNPrintf(name, PETSC_MAX_PATH_LEN - 1, "Patch matrix for Point %" PetscInt_FMT, point)); 21729566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)mat, name)); 21739566063dSJacob Faibussowitsch PetscCall(ObjectView((PetscObject)mat, patch->viewerMatrix, patch->formatMatrix)); 21742aa6f319SMatthew G. Knepley } 21759566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PC_Patch_ComputeOp, pc, 0, 0, 0)); 21763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21774bbf5ea8SMatthew G. Knepley } 21784bbf5ea8SMatthew G. Knepley 2179d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValues_PCPatch_Private(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar *v, InsertMode addv) 2180d71ae5a4SJacob Faibussowitsch { 2181fa84ea4cSLawrence Mitchell Vec data; 2182fa84ea4cSLawrence Mitchell PetscScalar *array; 2183fe988be2SFlorian Wechsung PetscInt bs, nz, i, j, cell; 2184fa84ea4cSLawrence Mitchell 21859566063dSJacob Faibussowitsch PetscCall(MatShellGetContext(mat, &data)); 21869566063dSJacob Faibussowitsch PetscCall(VecGetBlockSize(data, &bs)); 21879566063dSJacob Faibussowitsch PetscCall(VecGetSize(data, &nz)); 21889566063dSJacob Faibussowitsch PetscCall(VecGetArray(data, &array)); 218908401ef6SPierre Jolivet PetscCheck(m == n, PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONG, "Only for square insertion"); 219033cbca70SPatrick Farrell cell = (PetscInt)(idxm[0] / bs); /* use the fact that this is called once per cell */ 2191fa84ea4cSLawrence Mitchell for (i = 0; i < m; i++) { 219208401ef6SPierre Jolivet PetscCheck(idxm[i] == idxn[i], PetscObjectComm((PetscObject)mat), PETSC_ERR_ARG_WRONG, "Row and column indices must match!"); 2193fa84ea4cSLawrence Mitchell for (j = 0; j < n; j++) { 2194fa84ea4cSLawrence Mitchell const PetscScalar v_ = v[i * bs + j]; 2195fa84ea4cSLawrence Mitchell /* Indexing is special to the data structure we have! */ 2196fa84ea4cSLawrence Mitchell if (addv == INSERT_VALUES) { 2197fe988be2SFlorian Wechsung array[cell * bs * bs + i * bs + j] = v_; 2198fa84ea4cSLawrence Mitchell } else { 2199fe988be2SFlorian Wechsung array[cell * bs * bs + i * bs + j] += v_; 2200fa84ea4cSLawrence Mitchell } 2201fa84ea4cSLawrence Mitchell } 2202fa84ea4cSLawrence Mitchell } 22039566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(data, &array)); 22043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2205fa84ea4cSLawrence Mitchell } 2206fa84ea4cSLawrence Mitchell 2207d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCPatchPrecomputePatchTensors_Private(PC pc) 2208d71ae5a4SJacob Faibussowitsch { 2209fa84ea4cSLawrence Mitchell PC_PATCH *patch = (PC_PATCH *)pc->data; 2210fa84ea4cSLawrence Mitchell const PetscInt *cellsArray; 2211fa84ea4cSLawrence Mitchell PetscInt ncell, offset; 2212fa84ea4cSLawrence Mitchell const PetscInt *dofMapArray; 2213fa84ea4cSLawrence Mitchell PetscInt i, j; 2214fa84ea4cSLawrence Mitchell IS dofMap; 2215fa84ea4cSLawrence Mitchell IS cellIS; 2216fa84ea4cSLawrence Mitchell const PetscInt ndof = patch->totalDofsPerCell; 2217fa84ea4cSLawrence Mitchell Mat vecMat; 2218fe988be2SFlorian Wechsung PetscInt cStart, cEnd; 2219fe988be2SFlorian Wechsung DM dm, plex; 2220fe988be2SFlorian Wechsung 22219566063dSJacob Faibussowitsch PetscCall(ISGetSize(patch->cells, &ncell)); 2222e9c2c94bSFlorian Wechsung if (!ncell) { /* No cells to assemble over -> skip */ 22233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2224e9c2c94bSFlorian Wechsung } 2225e9c2c94bSFlorian Wechsung 22269566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PC_Patch_ComputeOp, pc, 0, 0, 0)); 2227fa84ea4cSLawrence Mitchell 22289566063dSJacob Faibussowitsch PetscCall(PCGetDM(pc, &dm)); 22299566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 2230b6bb21d1SLawrence Mitchell dm = plex; 2231fa84ea4cSLawrence Mitchell if (!patch->allCells) { 2232fa84ea4cSLawrence Mitchell PetscHSetI cells; 2233fa84ea4cSLawrence Mitchell PetscHashIter hi; 2234fa84ea4cSLawrence Mitchell PetscInt pStart, pEnd; 2235fa84ea4cSLawrence Mitchell PetscInt *allCells = NULL; 22369566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&cells)); 22379566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->cells, &cellsArray)); 22389566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(patch->cellCounts, &pStart, &pEnd)); 2239fa84ea4cSLawrence Mitchell for (i = pStart; i < pEnd; i++) { 22409566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->cellCounts, i, &ncell)); 22419566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->cellCounts, i, &offset)); 2242fa84ea4cSLawrence Mitchell if (ncell <= 0) continue; 224348a46eb9SPierre Jolivet for (j = 0; j < ncell; j++) PetscCall(PetscHSetIAdd(cells, cellsArray[offset + j])); 2244fa84ea4cSLawrence Mitchell } 22459566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->cells, &cellsArray)); 22469566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(cells, &ncell)); 22479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncell, &allCells)); 22489566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 22499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cEnd - cStart, &patch->precomputedTensorLocations)); 2250fa84ea4cSLawrence Mitchell i = 0; 2251fa84ea4cSLawrence Mitchell PetscHashIterBegin(cells, hi); 2252fa84ea4cSLawrence Mitchell while (!PetscHashIterAtEnd(cells, hi)) { 2253fe988be2SFlorian Wechsung PetscHashIterGetKey(cells, hi, allCells[i]); 2254fe988be2SFlorian Wechsung patch->precomputedTensorLocations[allCells[i]] = i; 2255fa84ea4cSLawrence Mitchell PetscHashIterNext(cells, hi); 2256fe988be2SFlorian Wechsung i++; 2257fa84ea4cSLawrence Mitchell } 22589566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&cells)); 22599566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncell, allCells, PETSC_OWN_POINTER, &patch->allCells)); 2260fa84ea4cSLawrence Mitchell } 22619566063dSJacob Faibussowitsch PetscCall(ISGetSize(patch->allCells, &ncell)); 2262fa84ea4cSLawrence Mitchell if (!patch->cellMats) { 22639566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, ncell * ndof * ndof, &patch->cellMats)); 22649566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(patch->cellMats, ndof)); 2265fa84ea4cSLawrence Mitchell } 22669566063dSJacob Faibussowitsch PetscCall(VecSet(patch->cellMats, 0)); 2267fa84ea4cSLawrence Mitchell 2268d0609cedSBarry Smith PetscCall(MatCreateShell(PETSC_COMM_SELF, ncell * ndof, ncell * ndof, ncell * ndof, ncell * ndof, (void *)patch->cellMats, &vecMat)); 22699566063dSJacob Faibussowitsch PetscCall(MatShellSetOperation(vecMat, MATOP_SET_VALUES, (void (*)(void)) & MatSetValues_PCPatch_Private)); 22709566063dSJacob Faibussowitsch PetscCall(ISGetSize(patch->allCells, &ncell)); 22719566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, ndof * ncell, 0, 1, &dofMap)); 22729566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dofMap, &dofMapArray)); 22739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->allCells, &cellsArray)); 22749566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncell, cellsArray, PETSC_USE_POINTER, &cellIS)); 2275fa84ea4cSLawrence Mitchell /* TODO: Fix for DMPlex compute op, this bypasses a lot of the machinery and just assembles every element tensor. */ 2276792fecdfSBarry Smith PetscCallBack("PCPatch callback", patch->usercomputeop(pc, -1, NULL, vecMat, cellIS, ndof * ncell, dofMapArray, NULL, patch->usercomputeopctx)); 22779566063dSJacob Faibussowitsch PetscCall(ISDestroy(&cellIS)); 22789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&vecMat)); 22799566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->allCells, &cellsArray)); 22809566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(dofMap, &dofMapArray)); 22819566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dofMap)); 2282f98464cbSLawrence Mitchell 2283f98464cbSLawrence Mitchell if (patch->usercomputeopintfacet) { 2284f98464cbSLawrence Mitchell PetscInt nIntFacets; 2285f98464cbSLawrence Mitchell IS intFacetsIS; 2286f98464cbSLawrence Mitchell const PetscInt *intFacetsArray = NULL; 2287f98464cbSLawrence Mitchell if (!patch->allIntFacets) { 2288f98464cbSLawrence Mitchell PetscHSetI facets; 2289f98464cbSLawrence Mitchell PetscHashIter hi; 2290f98464cbSLawrence Mitchell PetscInt pStart, pEnd, fStart, fEnd; 2291f98464cbSLawrence Mitchell PetscInt *allIntFacets = NULL; 22929566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&facets)); 22939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->intFacets, &intFacetsArray)); 22949566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(patch->intFacetCounts, &pStart, &pEnd)); 22959566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd)); 2296f98464cbSLawrence Mitchell for (i = pStart; i < pEnd; i++) { 22979566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->intFacetCounts, i, &nIntFacets)); 22989566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->intFacetCounts, i, &offset)); 2299f98464cbSLawrence Mitchell if (nIntFacets <= 0) continue; 230048a46eb9SPierre Jolivet for (j = 0; j < nIntFacets; j++) PetscCall(PetscHSetIAdd(facets, intFacetsArray[offset + j])); 2301f98464cbSLawrence Mitchell } 23029566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->intFacets, &intFacetsArray)); 23039566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(facets, &nIntFacets)); 23049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nIntFacets, &allIntFacets)); 23059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(fEnd - fStart, &patch->precomputedIntFacetTensorLocations)); 2306f98464cbSLawrence Mitchell i = 0; 2307f98464cbSLawrence Mitchell PetscHashIterBegin(facets, hi); 2308f98464cbSLawrence Mitchell while (!PetscHashIterAtEnd(facets, hi)) { 2309f98464cbSLawrence Mitchell PetscHashIterGetKey(facets, hi, allIntFacets[i]); 2310de2d1767SPatrick Farrell patch->precomputedIntFacetTensorLocations[allIntFacets[i] - fStart] = i; 2311f98464cbSLawrence Mitchell PetscHashIterNext(facets, hi); 2312f98464cbSLawrence Mitchell i++; 2313f98464cbSLawrence Mitchell } 23149566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&facets)); 23159566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, nIntFacets, allIntFacets, PETSC_OWN_POINTER, &patch->allIntFacets)); 2316f98464cbSLawrence Mitchell } 23179566063dSJacob Faibussowitsch PetscCall(ISGetSize(patch->allIntFacets, &nIntFacets)); 2318f98464cbSLawrence Mitchell if (!patch->intFacetMats) { 23199566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, nIntFacets * ndof * ndof * 4, &patch->intFacetMats)); 23209566063dSJacob Faibussowitsch PetscCall(VecSetBlockSize(patch->intFacetMats, ndof * 2)); 2321f98464cbSLawrence Mitchell } 23229566063dSJacob Faibussowitsch PetscCall(VecSet(patch->intFacetMats, 0)); 2323f98464cbSLawrence Mitchell 2324d0609cedSBarry Smith PetscCall(MatCreateShell(PETSC_COMM_SELF, nIntFacets * ndof * 2, nIntFacets * ndof * 2, nIntFacets * ndof * 2, nIntFacets * ndof * 2, (void *)patch->intFacetMats, &vecMat)); 23259566063dSJacob Faibussowitsch PetscCall(MatShellSetOperation(vecMat, MATOP_SET_VALUES, (void (*)(void)) & MatSetValues_PCPatch_Private)); 23269566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, 2 * ndof * nIntFacets, 0, 1, &dofMap)); 23279566063dSJacob Faibussowitsch PetscCall(ISGetIndices(dofMap, &dofMapArray)); 23289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->allIntFacets, &intFacetsArray)); 23299566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, nIntFacets, intFacetsArray, PETSC_USE_POINTER, &intFacetsIS)); 2330f98464cbSLawrence Mitchell /* TODO: Fix for DMPlex compute op, this bypasses a lot of the machinery and just assembles every element tensor. */ 2331792fecdfSBarry Smith PetscCallBack("PCPatch callback (interior facets)", patch->usercomputeopintfacet(pc, -1, NULL, vecMat, intFacetsIS, 2 * ndof * nIntFacets, dofMapArray, NULL, patch->usercomputeopintfacetctx)); 23329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&intFacetsIS)); 23339566063dSJacob Faibussowitsch PetscCall(MatDestroy(&vecMat)); 23349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->allIntFacets, &intFacetsArray)); 23359566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(dofMap, &dofMapArray)); 23369566063dSJacob Faibussowitsch PetscCall(ISDestroy(&dofMap)); 2337f98464cbSLawrence Mitchell } 23389566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm)); 23399566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PC_Patch_ComputeOp, pc, 0, 0, 0)); 23403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2341fa84ea4cSLawrence Mitchell } 2342fa84ea4cSLawrence Mitchell 2343d71ae5a4SJacob Faibussowitsch PetscErrorCode PCPatch_ScatterLocal_Private(PC pc, PetscInt p, Vec x, Vec y, InsertMode mode, ScatterMode scat, PatchScatterType scattertype) 2344d71ae5a4SJacob Faibussowitsch { 23454bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 23464bbf5ea8SMatthew G. Knepley const PetscScalar *xArray = NULL; 23474bbf5ea8SMatthew G. Knepley PetscScalar *yArray = NULL; 23484bbf5ea8SMatthew G. Knepley const PetscInt *gtolArray = NULL; 23494bbf5ea8SMatthew G. Knepley PetscInt dof, offset, lidx; 23504bbf5ea8SMatthew G. Knepley 23514bbf5ea8SMatthew G. Knepley PetscFunctionBeginHot; 23529566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xArray)); 23539566063dSJacob Faibussowitsch PetscCall(VecGetArray(y, &yArray)); 23540904074fSPatrick Farrell if (scattertype == SCATTER_WITHARTIFICIAL) { 23559566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->gtolCountsWithArtificial, p, &dof)); 23569566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->gtolCountsWithArtificial, p, &offset)); 23579566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->gtolWithArtificial, >olArray)); 23580904074fSPatrick Farrell } else if (scattertype == SCATTER_WITHALL) { 23599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->gtolCountsWithAll, p, &dof)); 23609566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->gtolCountsWithAll, p, &offset)); 23619566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->gtolWithAll, >olArray)); 2362c2e6f3c0SFlorian Wechsung } else { 23639566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->gtolCounts, p, &dof)); 23649566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->gtolCounts, p, &offset)); 23659566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->gtol, >olArray)); 2366c2e6f3c0SFlorian Wechsung } 23672472a847SBarry Smith PetscCheck(mode != INSERT_VALUES || scat == SCATTER_FORWARD, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Can't insert if not scattering forward"); 23682472a847SBarry Smith PetscCheck(mode != ADD_VALUES || scat == SCATTER_REVERSE, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Can't add if not scattering reverse"); 23694bbf5ea8SMatthew G. Knepley for (lidx = 0; lidx < dof; ++lidx) { 23704bbf5ea8SMatthew G. Knepley const PetscInt gidx = gtolArray[offset + lidx]; 23714bbf5ea8SMatthew G. Knepley 23724bbf5ea8SMatthew G. Knepley if (mode == INSERT_VALUES) yArray[lidx] = xArray[gidx]; /* Forward */ 23734bbf5ea8SMatthew G. Knepley else yArray[gidx] += xArray[lidx]; /* Reverse */ 23744bbf5ea8SMatthew G. Knepley } 23750904074fSPatrick Farrell if (scattertype == SCATTER_WITHARTIFICIAL) { 23769566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->gtolWithArtificial, >olArray)); 23770904074fSPatrick Farrell } else if (scattertype == SCATTER_WITHALL) { 23789566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->gtolWithAll, >olArray)); 2379c2e6f3c0SFlorian Wechsung } else { 23809566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->gtol, >olArray)); 2381c2e6f3c0SFlorian Wechsung } 23829566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xArray)); 23839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(y, &yArray)); 23843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23854bbf5ea8SMatthew G. Knepley } 23864bbf5ea8SMatthew G. Knepley 2387d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCSetUp_PATCH_Linear(PC pc) 2388d71ae5a4SJacob Faibussowitsch { 2389dadc69c5SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 2390dadc69c5SMatthew G. Knepley const char *prefix; 2391dadc69c5SMatthew G. Knepley PetscInt i; 2392dadc69c5SMatthew G. Knepley 2393dadc69c5SMatthew G. Knepley PetscFunctionBegin; 2394dadc69c5SMatthew G. Knepley if (!pc->setupcalled) { 23957827d75bSBarry Smith PetscCheck(patch->save_operators || !patch->denseinverse, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONGSTATE, "Can't have dense inverse without save operators"); 2396c73d2cf6SLawrence Mitchell if (!patch->denseinverse) { 23979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(patch->npatch, &patch->solver)); 23989566063dSJacob Faibussowitsch PetscCall(PCGetOptionsPrefix(pc, &prefix)); 2399dadc69c5SMatthew G. Knepley for (i = 0; i < patch->npatch; ++i) { 2400dadc69c5SMatthew G. Knepley KSP ksp; 2401dadc69c5SMatthew G. Knepley PC subpc; 2402dadc69c5SMatthew G. Knepley 24039566063dSJacob Faibussowitsch PetscCall(KSPCreate(PETSC_COMM_SELF, &ksp)); 24043821be0aSBarry Smith PetscCall(KSPSetNestLevel(ksp, pc->kspnestlevel)); 24059566063dSJacob Faibussowitsch PetscCall(KSPSetErrorIfNotConverged(ksp, pc->erroriffailure)); 24069566063dSJacob Faibussowitsch PetscCall(KSPSetOptionsPrefix(ksp, prefix)); 24079566063dSJacob Faibussowitsch PetscCall(KSPAppendOptionsPrefix(ksp, "sub_")); 24089566063dSJacob Faibussowitsch PetscCall(PetscObjectIncrementTabLevel((PetscObject)ksp, (PetscObject)pc, 1)); 24099566063dSJacob Faibussowitsch PetscCall(KSPGetPC(ksp, &subpc)); 24109566063dSJacob Faibussowitsch PetscCall(PetscObjectIncrementTabLevel((PetscObject)subpc, (PetscObject)pc, 1)); 2411dadc69c5SMatthew G. Knepley patch->solver[i] = (PetscObject)ksp; 2412dadc69c5SMatthew G. Knepley } 2413dadc69c5SMatthew G. Knepley } 2414c73d2cf6SLawrence Mitchell } 2415dadc69c5SMatthew G. Knepley if (patch->save_operators) { 24161baa6e33SBarry Smith if (patch->precomputeElementTensors) PetscCall(PCPatchPrecomputePatchTensors_Private(pc)); 2417dadc69c5SMatthew G. Knepley for (i = 0; i < patch->npatch; ++i) { 24189566063dSJacob Faibussowitsch PetscCall(PCPatchComputeOperator_Internal(pc, NULL, patch->mat[i], i, PETSC_FALSE)); 2419c73d2cf6SLawrence Mitchell if (!patch->denseinverse) { 24209566063dSJacob Faibussowitsch PetscCall(KSPSetOperators((KSP)patch->solver[i], patch->mat[i], patch->mat[i])); 24219d4fc724SLawrence Mitchell } else if (patch->mat[i] && !patch->densesolve) { 24229d4fc724SLawrence Mitchell /* Setup matmult callback */ 24239566063dSJacob Faibussowitsch PetscCall(MatGetOperation(patch->mat[i], MATOP_MULT, (void (**)(void)) & patch->densesolve)); 2424dadc69c5SMatthew G. Knepley } 2425dadc69c5SMatthew G. Knepley } 2426c73d2cf6SLawrence Mitchell } 242734d8b122SPatrick Farrell if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) { 242834d8b122SPatrick Farrell for (i = 0; i < patch->npatch; ++i) { 24291202d238SPatrick Farrell /* Instead of padding patch->patchUpdate with zeros to get */ 24301202d238SPatrick Farrell /* patch->patchUpdateWithArtificial and then multiplying with the matrix, */ 243134d8b122SPatrick Farrell /* just get rid of the columns that correspond to the dofs with */ 243234d8b122SPatrick Farrell /* artificial bcs. That's of course fairly inefficient, hopefully we */ 243334d8b122SPatrick Farrell /* can just assemble the rectangular matrix in the first place. */ 243434d8b122SPatrick Farrell Mat matSquare; 243534d8b122SPatrick Farrell IS rowis; 243634d8b122SPatrick Farrell PetscInt dof; 243734d8b122SPatrick Farrell 24389566063dSJacob Faibussowitsch PetscCall(MatGetSize(patch->mat[i], &dof, NULL)); 243934d8b122SPatrick Farrell if (dof == 0) { 244034d8b122SPatrick Farrell patch->matWithArtificial[i] = NULL; 244134d8b122SPatrick Farrell continue; 244234d8b122SPatrick Farrell } 244334d8b122SPatrick Farrell 24449566063dSJacob Faibussowitsch PetscCall(PCPatchCreateMatrix_Private(pc, i, &matSquare, PETSC_TRUE)); 24459566063dSJacob Faibussowitsch PetscCall(PCPatchComputeOperator_Internal(pc, NULL, matSquare, i, PETSC_TRUE)); 244634d8b122SPatrick Farrell 24479566063dSJacob Faibussowitsch PetscCall(MatGetSize(matSquare, &dof, NULL)); 24489566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, dof, 0, 1, &rowis)); 244934d8b122SPatrick Farrell if (pc->setupcalled) { 24509566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(matSquare, rowis, patch->dofMappingWithoutToWithArtificial[i], MAT_REUSE_MATRIX, &patch->matWithArtificial[i])); 245134d8b122SPatrick Farrell } else { 24529566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(matSquare, rowis, patch->dofMappingWithoutToWithArtificial[i], MAT_INITIAL_MATRIX, &patch->matWithArtificial[i])); 245334d8b122SPatrick Farrell } 24549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rowis)); 24559566063dSJacob Faibussowitsch PetscCall(MatDestroy(&matSquare)); 245634d8b122SPatrick Farrell } 245734d8b122SPatrick Farrell } 24583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2459dadc69c5SMatthew G. Knepley } 2460dadc69c5SMatthew G. Knepley 2461d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCSetUp_PATCH(PC pc) 2462d71ae5a4SJacob Faibussowitsch { 24634bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 2464557beb66SLawrence Mitchell PetscInt i; 246539fd2e8aSPatrick Farrell PetscBool isNonlinear; 24669d4fc724SLawrence Mitchell PetscInt maxDof = -1, maxDofWithArtificial = -1; 24674bbf5ea8SMatthew G. Knepley 24684bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 24694bbf5ea8SMatthew G. Knepley if (!pc->setupcalled) { 24704bbf5ea8SMatthew G. Knepley PetscInt pStart, pEnd, p; 24714bbf5ea8SMatthew G. Knepley PetscInt localSize; 24724bbf5ea8SMatthew G. Knepley 24739566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PC_Patch_CreatePatches, pc, 0, 0, 0)); 24744bbf5ea8SMatthew G. Knepley 2475debbdec3SPatrick Farrell isNonlinear = patch->isNonlinear; 24765f824522SMatthew G. Knepley if (!patch->nsubspaces) { 2477b6bb21d1SLawrence Mitchell DM dm, plex; 24785f824522SMatthew G. Knepley PetscSection s; 2479bd026e97SJed Brown PetscInt cStart, cEnd, c, Nf, f, numGlobalBcs = 0, *globalBcs, *Nb, **cellDofs; 24805f824522SMatthew G. Knepley 24819566063dSJacob Faibussowitsch PetscCall(PCGetDM(pc, &dm)); 248228b400f6SJacob Faibussowitsch PetscCheck(dm, PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_WRONG, "Must set DM for PCPATCH or call PCPatchSetDiscretisationInfo()"); 24839566063dSJacob Faibussowitsch PetscCall(DMConvert(dm, DMPLEX, &plex)); 2484b6bb21d1SLawrence Mitchell dm = plex; 24859566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(dm, &s)); 24869566063dSJacob Faibussowitsch PetscCall(PetscSectionGetNumFields(s, &Nf)); 24879566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(s, &pStart, &pEnd)); 24885f824522SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 24895f824522SMatthew G. Knepley PetscInt cdof; 24909566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 24915f824522SMatthew G. Knepley numGlobalBcs += cdof; 24925f824522SMatthew G. Knepley } 24939566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd)); 24949566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(Nf, &Nb, Nf, &cellDofs, numGlobalBcs, &globalBcs)); 24955f824522SMatthew G. Knepley for (f = 0; f < Nf; ++f) { 24965f824522SMatthew G. Knepley PetscFE fe; 24975f824522SMatthew G. Knepley PetscDualSpace sp; 24985f824522SMatthew G. Knepley PetscInt cdoff = 0; 24995f824522SMatthew G. Knepley 25009566063dSJacob Faibussowitsch PetscCall(DMGetField(dm, f, NULL, (PetscObject *)&fe)); 25019566063dSJacob Faibussowitsch /* PetscCall(PetscFEGetNumComponents(fe, &Nc[f])); */ 25029566063dSJacob Faibussowitsch PetscCall(PetscFEGetDualSpace(fe, &sp)); 25039566063dSJacob Faibussowitsch PetscCall(PetscDualSpaceGetDimension(sp, &Nb[f])); 25045f824522SMatthew G. Knepley 25059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((cEnd - cStart) * Nb[f], &cellDofs[f])); 25065f824522SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 25075f824522SMatthew G. Knepley PetscInt *closure = NULL; 25085f824522SMatthew G. Knepley PetscInt clSize = 0, cl; 25095f824522SMatthew G. Knepley 25109566063dSJacob Faibussowitsch PetscCall(DMPlexGetTransitiveClosure(dm, c, PETSC_TRUE, &clSize, &closure)); 25115f824522SMatthew G. Knepley for (cl = 0; cl < clSize * 2; cl += 2) { 25125f824522SMatthew G. Knepley const PetscInt p = closure[cl]; 25135f824522SMatthew G. Knepley PetscInt fdof, d, foff; 25145f824522SMatthew G. Knepley 25159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldDof(s, p, f, &fdof)); 25169566063dSJacob Faibussowitsch PetscCall(PetscSectionGetFieldOffset(s, p, f, &foff)); 25175f824522SMatthew G. Knepley for (d = 0; d < fdof; ++d, ++cdoff) cellDofs[f][cdoff] = foff + d; 25185f824522SMatthew G. Knepley } 25199566063dSJacob Faibussowitsch PetscCall(DMPlexRestoreTransitiveClosure(dm, c, PETSC_TRUE, &clSize, &closure)); 25205f824522SMatthew G. Knepley } 252163a3b9bcSJacob Faibussowitsch PetscCheck(cdoff == (cEnd - cStart) * Nb[f], PetscObjectComm((PetscObject)pc), PETSC_ERR_ARG_SIZ, "Total number of cellDofs %" PetscInt_FMT " for field %" PetscInt_FMT " should be Nc (%" PetscInt_FMT ") * cellDof (%" PetscInt_FMT ")", cdoff, f, cEnd - cStart, Nb[f]); 25225f824522SMatthew G. Knepley } 25235f824522SMatthew G. Knepley numGlobalBcs = 0; 25245f824522SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 25255f824522SMatthew G. Knepley const PetscInt *ind; 25265f824522SMatthew G. Knepley PetscInt off, cdof, d; 25275f824522SMatthew G. Knepley 25289566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(s, p, &off)); 25299566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintDof(s, p, &cdof)); 25309566063dSJacob Faibussowitsch PetscCall(PetscSectionGetConstraintIndices(s, p, &ind)); 25315f824522SMatthew G. Knepley for (d = 0; d < cdof; ++d) globalBcs[numGlobalBcs++] = off + ind[d]; 25325f824522SMatthew G. Knepley } 25335f824522SMatthew G. Knepley 25349566063dSJacob Faibussowitsch PetscCall(PCPatchSetDiscretisationInfoCombined(pc, dm, Nb, (const PetscInt **)cellDofs, numGlobalBcs, globalBcs, numGlobalBcs, globalBcs)); 253548a46eb9SPierre Jolivet for (f = 0; f < Nf; ++f) PetscCall(PetscFree(cellDofs[f])); 25369566063dSJacob Faibussowitsch PetscCall(PetscFree3(Nb, cellDofs, globalBcs)); 25379566063dSJacob Faibussowitsch PetscCall(PCPatchSetComputeFunction(pc, PCPatchComputeFunction_DMPlex_Private, NULL)); 25389566063dSJacob Faibussowitsch PetscCall(PCPatchSetComputeOperator(pc, PCPatchComputeOperator_DMPlex_Private, NULL)); 25399566063dSJacob Faibussowitsch PetscCall(DMDestroy(&dm)); 25405f824522SMatthew G. Knepley } 25415f824522SMatthew G. Knepley 25424bbf5ea8SMatthew G. Knepley localSize = patch->subspaceOffsets[patch->nsubspaces]; 25439566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, localSize, &patch->localRHS)); 25449566063dSJacob Faibussowitsch PetscCall(VecSetUp(patch->localRHS)); 25459566063dSJacob Faibussowitsch PetscCall(VecDuplicate(patch->localRHS, &patch->localUpdate)); 25469566063dSJacob Faibussowitsch PetscCall(PCPatchCreateCellPatches(pc)); 25479566063dSJacob Faibussowitsch PetscCall(PCPatchCreateCellPatchDiscretisationInfo(pc)); 25484bbf5ea8SMatthew G. Knepley 25494bbf5ea8SMatthew G. Knepley /* OK, now build the work vectors */ 25509566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(patch->gtolCounts, &pStart, &pEnd)); 2551c2e6f3c0SFlorian Wechsung 255248a46eb9SPierre Jolivet if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) PetscCall(PetscMalloc1(patch->npatch, &patch->dofMappingWithoutToWithArtificial)); 255348a46eb9SPierre Jolivet if (isNonlinear) PetscCall(PetscMalloc1(patch->npatch, &patch->dofMappingWithoutToWithAll)); 25544bbf5ea8SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 25554bbf5ea8SMatthew G. Knepley PetscInt dof; 25564bbf5ea8SMatthew G. Knepley 25579566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->gtolCounts, p, &dof)); 25582f613bf5SBarry Smith maxDof = PetscMax(maxDof, dof); 25590904074fSPatrick Farrell if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) { 25603bb0e8f7SKarl Rupp const PetscInt *gtolArray, *gtolArrayWithArtificial = NULL; 25613bb0e8f7SKarl Rupp PetscInt numPatchDofs, offset; 25623bb0e8f7SKarl Rupp PetscInt numPatchDofsWithArtificial, offsetWithArtificial; 25633bb0e8f7SKarl Rupp PetscInt dofWithoutArtificialCounter = 0; 25643bb0e8f7SKarl Rupp PetscInt *patchWithoutArtificialToWithArtificialArray; 25653bb0e8f7SKarl Rupp 25669566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->gtolCountsWithArtificial, p, &dof)); 25679d4fc724SLawrence Mitchell maxDofWithArtificial = PetscMax(maxDofWithArtificial, dof); 2568c2e6f3c0SFlorian Wechsung 2569e047a90bSFlorian Wechsung /* Now build the mapping that for a dof in a patch WITHOUT dofs that have artificial bcs gives the */ 2570e047a90bSFlorian Wechsung /* the index in the patch with all dofs */ 25719566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->gtol, >olArray)); 257263deea8eSPatrick Farrell 25739566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->gtolCounts, p, &numPatchDofs)); 257447aca4a6SPatrick Farrell if (numPatchDofs == 0) { 257547aca4a6SPatrick Farrell patch->dofMappingWithoutToWithArtificial[p - pStart] = NULL; 257647aca4a6SPatrick Farrell continue; 257747aca4a6SPatrick Farrell } 257863deea8eSPatrick Farrell 25799566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->gtolCounts, p, &offset)); 25809566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->gtolWithArtificial, >olArrayWithArtificial)); 25819566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->gtolCountsWithArtificial, p, &numPatchDofsWithArtificial)); 25829566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->gtolCountsWithArtificial, p, &offsetWithArtificial)); 2583c2e6f3c0SFlorian Wechsung 25849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPatchDofs, &patchWithoutArtificialToWithArtificialArray)); 2585b0c21b6aSKarl Rupp for (i = 0; i < numPatchDofsWithArtificial; i++) { 2586e047a90bSFlorian Wechsung if (gtolArrayWithArtificial[i + offsetWithArtificial] == gtolArray[offset + dofWithoutArtificialCounter]) { 2587c2e6f3c0SFlorian Wechsung patchWithoutArtificialToWithArtificialArray[dofWithoutArtificialCounter] = i; 2588c2e6f3c0SFlorian Wechsung dofWithoutArtificialCounter++; 25899371c9d4SSatish Balay if (dofWithoutArtificialCounter == numPatchDofs) break; 2590c2e6f3c0SFlorian Wechsung } 2591c2e6f3c0SFlorian Wechsung } 25929566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numPatchDofs, patchWithoutArtificialToWithArtificialArray, PETSC_OWN_POINTER, &patch->dofMappingWithoutToWithArtificial[p - pStart])); 25939566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->gtol, >olArray)); 25949566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->gtolWithArtificial, >olArrayWithArtificial)); 2595c2e6f3c0SFlorian Wechsung } 25960997d788SPatrick Farrell } 25970997d788SPatrick Farrell for (p = pStart; p < pEnd; ++p) { 25980904074fSPatrick Farrell if (isNonlinear) { 25990904074fSPatrick Farrell const PetscInt *gtolArray, *gtolArrayWithAll = NULL; 26000904074fSPatrick Farrell PetscInt numPatchDofs, offset; 26010904074fSPatrick Farrell PetscInt numPatchDofsWithAll, offsetWithAll; 26020904074fSPatrick Farrell PetscInt dofWithoutAllCounter = 0; 26030904074fSPatrick Farrell PetscInt *patchWithoutAllToWithAllArray; 26040904074fSPatrick Farrell 26050904074fSPatrick Farrell /* Now build the mapping that for a dof in a patch WITHOUT dofs that have artificial bcs gives the */ 26060904074fSPatrick Farrell /* the index in the patch with all dofs */ 26079566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->gtol, >olArray)); 26080904074fSPatrick Farrell 26099566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->gtolCounts, p, &numPatchDofs)); 261047aca4a6SPatrick Farrell if (numPatchDofs == 0) { 2611b88cb22dSPatrick Farrell patch->dofMappingWithoutToWithAll[p - pStart] = NULL; 261247aca4a6SPatrick Farrell continue; 261347aca4a6SPatrick Farrell } 26140904074fSPatrick Farrell 26159566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->gtolCounts, p, &offset)); 26169566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->gtolWithAll, >olArrayWithAll)); 26179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->gtolCountsWithAll, p, &numPatchDofsWithAll)); 26189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->gtolCountsWithAll, p, &offsetWithAll)); 26190904074fSPatrick Farrell 26209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numPatchDofs, &patchWithoutAllToWithAllArray)); 26210904074fSPatrick Farrell 26220904074fSPatrick Farrell for (i = 0; i < numPatchDofsWithAll; i++) { 26230904074fSPatrick Farrell if (gtolArrayWithAll[i + offsetWithAll] == gtolArray[offset + dofWithoutAllCounter]) { 26240904074fSPatrick Farrell patchWithoutAllToWithAllArray[dofWithoutAllCounter] = i; 26250904074fSPatrick Farrell dofWithoutAllCounter++; 26269371c9d4SSatish Balay if (dofWithoutAllCounter == numPatchDofs) break; 26270904074fSPatrick Farrell } 26280904074fSPatrick Farrell } 26299566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, numPatchDofs, patchWithoutAllToWithAllArray, PETSC_OWN_POINTER, &patch->dofMappingWithoutToWithAll[p - pStart])); 26309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->gtol, >olArray)); 26319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->gtolWithAll, >olArrayWithAll)); 26320904074fSPatrick Farrell } 26334bbf5ea8SMatthew G. Knepley } 263460dd46caSLawrence Mitchell if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) { 26359566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, maxDofWithArtificial, &patch->patchRHSWithArtificial)); 26369566063dSJacob Faibussowitsch PetscCall(VecSetUp(patch->patchRHSWithArtificial)); 263760dd46caSLawrence Mitchell } 26389566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, maxDof, &patch->patchRHS)); 26399566063dSJacob Faibussowitsch PetscCall(VecSetUp(patch->patchRHS)); 26409566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, maxDof, &patch->patchUpdate)); 26419566063dSJacob Faibussowitsch PetscCall(VecSetUp(patch->patchUpdate)); 26424bbf5ea8SMatthew G. Knepley if (patch->save_operators) { 26439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(patch->npatch, &patch->mat)); 264448a46eb9SPierre Jolivet for (i = 0; i < patch->npatch; ++i) PetscCall(PCPatchCreateMatrix_Private(pc, i, &patch->mat[i], PETSC_FALSE)); 26454bbf5ea8SMatthew G. Knepley } 26469566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PC_Patch_CreatePatches, pc, 0, 0, 0)); 26474bbf5ea8SMatthew G. Knepley 26484bbf5ea8SMatthew G. Knepley /* If desired, calculate weights for dof multiplicity */ 26494bbf5ea8SMatthew G. Knepley if (patch->partition_of_unity) { 26503bb0e8f7SKarl Rupp PetscScalar *input = NULL; 26513bb0e8f7SKarl Rupp PetscScalar *output = NULL; 26523bb0e8f7SKarl Rupp Vec global; 26533bb0e8f7SKarl Rupp 26549566063dSJacob Faibussowitsch PetscCall(VecDuplicate(patch->localRHS, &patch->dof_weights)); 265561c4b389SFlorian Wechsung if (patch->local_composition_type == PC_COMPOSITE_ADDITIVE) { 26564bbf5ea8SMatthew G. Knepley for (i = 0; i < patch->npatch; ++i) { 26574bbf5ea8SMatthew G. Knepley PetscInt dof; 26584bbf5ea8SMatthew G. Knepley 26599566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->gtolCounts, i + pStart, &dof)); 26604bbf5ea8SMatthew G. Knepley if (dof <= 0) continue; 26619566063dSJacob Faibussowitsch PetscCall(VecSet(patch->patchRHS, 1.0)); 26629566063dSJacob Faibussowitsch PetscCall(PCPatch_ScatterLocal_Private(pc, i + pStart, patch->patchRHS, patch->dof_weights, ADD_VALUES, SCATTER_REVERSE, SCATTER_INTERIOR)); 26634bbf5ea8SMatthew G. Knepley } 2664c2e6f3c0SFlorian Wechsung } else { 2665e047a90bSFlorian Wechsung /* multiplicative is actually only locally multiplicative and globally additive. need the pou where the mesh decomposition overlaps */ 26669566063dSJacob Faibussowitsch PetscCall(VecSet(patch->dof_weights, 1.0)); 26674bbf5ea8SMatthew G. Knepley } 2668d132cafaSFlorian Wechsung 26693ba16761SJacob Faibussowitsch PetscCall(VecDuplicate(patch->dof_weights, &global)); 26703ba16761SJacob Faibussowitsch PetscCall(VecSet(global, 0.)); 2671d132cafaSFlorian Wechsung 26729566063dSJacob Faibussowitsch PetscCall(VecGetArray(patch->dof_weights, &input)); 26739566063dSJacob Faibussowitsch PetscCall(VecGetArray(global, &output)); 26749566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(patch->sectionSF, MPIU_SCALAR, input, output, MPI_SUM)); 26759566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(patch->sectionSF, MPIU_SCALAR, input, output, MPI_SUM)); 26769566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(patch->dof_weights, &input)); 26779566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(global, &output)); 2678d132cafaSFlorian Wechsung 26799566063dSJacob Faibussowitsch PetscCall(VecReciprocal(global)); 2680d132cafaSFlorian Wechsung 26819566063dSJacob Faibussowitsch PetscCall(VecGetArray(patch->dof_weights, &output)); 26829566063dSJacob Faibussowitsch PetscCall(VecGetArray(global, &input)); 26839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(patch->sectionSF, MPIU_SCALAR, input, output, MPI_REPLACE)); 26849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(patch->sectionSF, MPIU_SCALAR, input, output, MPI_REPLACE)); 26859566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(patch->dof_weights, &output)); 26869566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(global, &input)); 26879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&global)); 26884bbf5ea8SMatthew G. Knepley } 268948a46eb9SPierre Jolivet if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE && patch->save_operators && !patch->isNonlinear) PetscCall(PetscMalloc1(patch->npatch, &patch->matWithArtificial)); 26904bbf5ea8SMatthew G. Knepley } 26919566063dSJacob Faibussowitsch PetscCall((*patch->setupsolver)(pc)); 26923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26934bbf5ea8SMatthew G. Knepley } 2694dadc69c5SMatthew G. Knepley 2695d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCApply_PATCH_Linear(PC pc, PetscInt i, Vec x, Vec y) 2696d71ae5a4SJacob Faibussowitsch { 2697dadc69c5SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 2698c73d2cf6SLawrence Mitchell KSP ksp; 26999d4fc724SLawrence Mitchell Mat op; 27009d4fc724SLawrence Mitchell PetscInt m, n; 2701dadc69c5SMatthew G. Knepley 2702dadc69c5SMatthew G. Knepley PetscFunctionBegin; 2703c73d2cf6SLawrence Mitchell if (patch->denseinverse) { 27049566063dSJacob Faibussowitsch PetscCall((*patch->densesolve)(patch->mat[i], x, y)); 27053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2706c73d2cf6SLawrence Mitchell } 2707c73d2cf6SLawrence Mitchell ksp = (KSP)patch->solver[i]; 2708dadc69c5SMatthew G. Knepley if (!patch->save_operators) { 2709dadc69c5SMatthew G. Knepley Mat mat; 2710dadc69c5SMatthew G. Knepley 27119566063dSJacob Faibussowitsch PetscCall(PCPatchCreateMatrix_Private(pc, i, &mat, PETSC_FALSE)); 2712dadc69c5SMatthew G. Knepley /* Populate operator here. */ 27139566063dSJacob Faibussowitsch PetscCall(PCPatchComputeOperator_Internal(pc, NULL, mat, i, PETSC_FALSE)); 27149566063dSJacob Faibussowitsch PetscCall(KSPSetOperators(ksp, mat, mat)); 2715dadc69c5SMatthew G. Knepley /* Drop reference so the KSPSetOperators below will blow it away. */ 27169566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mat)); 2717dadc69c5SMatthew G. Knepley } 27189566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PC_Patch_Solve, pc, 0, 0, 0)); 271948a46eb9SPierre Jolivet if (!ksp->setfromoptionscalled) PetscCall(KSPSetFromOptions(ksp)); 27209d4fc724SLawrence Mitchell /* Disgusting trick to reuse work vectors */ 27219566063dSJacob Faibussowitsch PetscCall(KSPGetOperators(ksp, &op, NULL)); 27229566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(op, &m, &n)); 27239d4fc724SLawrence Mitchell x->map->n = m; 27249d4fc724SLawrence Mitchell y->map->n = n; 27259d4fc724SLawrence Mitchell x->map->N = m; 27269d4fc724SLawrence Mitchell y->map->N = n; 27279566063dSJacob Faibussowitsch PetscCall(KSPSolve(ksp, x, y)); 27289566063dSJacob Faibussowitsch PetscCall(KSPCheckSolve(ksp, pc, y)); 27299566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PC_Patch_Solve, pc, 0, 0, 0)); 2730dadc69c5SMatthew G. Knepley if (!patch->save_operators) { 2731dadc69c5SMatthew G. Knepley PC pc; 27329566063dSJacob Faibussowitsch PetscCall(KSPSetOperators(ksp, NULL, NULL)); 27339566063dSJacob Faibussowitsch PetscCall(KSPGetPC(ksp, &pc)); 2734dadc69c5SMatthew G. Knepley /* Destroy PC context too, otherwise the factored matrix hangs around. */ 27359566063dSJacob Faibussowitsch PetscCall(PCReset(pc)); 27364bbf5ea8SMatthew G. Knepley } 27373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27384bbf5ea8SMatthew G. Knepley } 27394bbf5ea8SMatthew G. Knepley 2740d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCUpdateMultiplicative_PATCH_Linear(PC pc, PetscInt i, PetscInt pStart) 2741d71ae5a4SJacob Faibussowitsch { 27426c9c532dSPatrick Farrell PC_PATCH *patch = (PC_PATCH *)pc->data; 27436c9c532dSPatrick Farrell Mat multMat; 27449d4fc724SLawrence Mitchell PetscInt n, m; 27456c9c532dSPatrick Farrell 27464d04e9f1SPatrick Farrell PetscFunctionBegin; 27476c9c532dSPatrick Farrell if (patch->save_operators) { 27486c9c532dSPatrick Farrell multMat = patch->matWithArtificial[i]; 27496c9c532dSPatrick Farrell } else { 27506c9c532dSPatrick Farrell /*Very inefficient, hopefully we can just assemble the rectangular matrix in the first place.*/ 27516c9c532dSPatrick Farrell Mat matSquare; 27526c9c532dSPatrick Farrell PetscInt dof; 27536c9c532dSPatrick Farrell IS rowis; 27549566063dSJacob Faibussowitsch PetscCall(PCPatchCreateMatrix_Private(pc, i, &matSquare, PETSC_TRUE)); 27559566063dSJacob Faibussowitsch PetscCall(PCPatchComputeOperator_Internal(pc, NULL, matSquare, i, PETSC_TRUE)); 27569566063dSJacob Faibussowitsch PetscCall(MatGetSize(matSquare, &dof, NULL)); 27579566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, dof, 0, 1, &rowis)); 27589566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(matSquare, rowis, patch->dofMappingWithoutToWithArtificial[i], MAT_INITIAL_MATRIX, &multMat)); 27599566063dSJacob Faibussowitsch PetscCall(MatDestroy(&matSquare)); 27609566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rowis)); 27616c9c532dSPatrick Farrell } 27629d4fc724SLawrence Mitchell /* Disgusting trick to reuse work vectors */ 27639566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(multMat, &m, &n)); 27649d4fc724SLawrence Mitchell patch->patchUpdate->map->n = n; 27659d4fc724SLawrence Mitchell patch->patchRHSWithArtificial->map->n = m; 27669d4fc724SLawrence Mitchell patch->patchUpdate->map->N = n; 27679d4fc724SLawrence Mitchell patch->patchRHSWithArtificial->map->N = m; 27689566063dSJacob Faibussowitsch PetscCall(MatMult(multMat, patch->patchUpdate, patch->patchRHSWithArtificial)); 27699566063dSJacob Faibussowitsch PetscCall(VecScale(patch->patchRHSWithArtificial, -1.0)); 27709566063dSJacob Faibussowitsch PetscCall(PCPatch_ScatterLocal_Private(pc, i + pStart, patch->patchRHSWithArtificial, patch->localRHS, ADD_VALUES, SCATTER_REVERSE, SCATTER_WITHARTIFICIAL)); 277148a46eb9SPierre Jolivet if (!patch->save_operators) PetscCall(MatDestroy(&multMat)); 27723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27736c9c532dSPatrick Farrell } 27746c9c532dSPatrick Farrell 2775d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCApply_PATCH(PC pc, Vec x, Vec y) 2776d71ae5a4SJacob Faibussowitsch { 27774bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 27781202d238SPatrick Farrell const PetscScalar *globalRHS = NULL; 27791202d238SPatrick Farrell PetscScalar *localRHS = NULL; 27801202d238SPatrick Farrell PetscScalar *globalUpdate = NULL; 27814bbf5ea8SMatthew G. Knepley const PetscInt *bcNodes = NULL; 27824bbf5ea8SMatthew G. Knepley PetscInt nsweep = patch->symmetrise_sweep ? 2 : 1; 27834bbf5ea8SMatthew G. Knepley PetscInt start[2] = {0, 0}; 27844bbf5ea8SMatthew G. Knepley PetscInt end[2] = {-1, -1}; 27854bbf5ea8SMatthew G. Knepley const PetscInt inc[2] = {1, -1}; 27861202d238SPatrick Farrell const PetscScalar *localUpdate; 27874bbf5ea8SMatthew G. Knepley const PetscInt *iterationSet; 27884bbf5ea8SMatthew G. Knepley PetscInt pStart, numBcs, n, sweep, bc, j; 27894bbf5ea8SMatthew G. Knepley 27904bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 27919566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PC_Patch_Apply, pc, 0, 0, 0)); 2792648c30bcSBarry Smith PetscCall(PetscOptionsPushCreateViewerOff(PETSC_TRUE)); 279392d50984SMatthew G. Knepley /* start, end, inc have 2 entries to manage a second backward sweep if we symmetrize */ 27944bbf5ea8SMatthew G. Knepley end[0] = patch->npatch; 27954bbf5ea8SMatthew G. Knepley start[1] = patch->npatch - 1; 27964bbf5ea8SMatthew G. Knepley if (patch->user_patches) { 27979566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(patch->iterationSet, &end[0])); 27984bbf5ea8SMatthew G. Knepley start[1] = end[0] - 1; 27999566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->iterationSet, &iterationSet)); 28004bbf5ea8SMatthew G. Knepley } 28014bbf5ea8SMatthew G. Knepley /* Scatter from global space into overlapped local spaces */ 28029566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &globalRHS)); 28039566063dSJacob Faibussowitsch PetscCall(VecGetArray(patch->localRHS, &localRHS)); 28049566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(patch->sectionSF, MPIU_SCALAR, globalRHS, localRHS, MPI_REPLACE)); 28059566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(patch->sectionSF, MPIU_SCALAR, globalRHS, localRHS, MPI_REPLACE)); 28069566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &globalRHS)); 28079566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(patch->localRHS, &localRHS)); 28084bbf5ea8SMatthew G. Knepley 28099566063dSJacob Faibussowitsch PetscCall(VecSet(patch->localUpdate, 0.0)); 28109566063dSJacob Faibussowitsch PetscCall(PetscSectionGetChart(patch->gtolCounts, &pStart, NULL)); 28119566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PC_Patch_Solve, pc, 0, 0, 0)); 28124bbf5ea8SMatthew G. Knepley for (sweep = 0; sweep < nsweep; sweep++) { 28134bbf5ea8SMatthew G. Knepley for (j = start[sweep]; j * inc[sweep] < end[sweep] * inc[sweep]; j += inc[sweep]) { 28144bbf5ea8SMatthew G. Knepley PetscInt i = patch->user_patches ? iterationSet[j] : j; 28154bbf5ea8SMatthew G. Knepley PetscInt start, len; 28164bbf5ea8SMatthew G. Knepley 28179566063dSJacob Faibussowitsch PetscCall(PetscSectionGetDof(patch->gtolCounts, i + pStart, &len)); 28189566063dSJacob Faibussowitsch PetscCall(PetscSectionGetOffset(patch->gtolCounts, i + pStart, &start)); 28194bbf5ea8SMatthew G. Knepley /* TODO: Squash out these guys in the setup as well. */ 28204bbf5ea8SMatthew G. Knepley if (len <= 0) continue; 28214bbf5ea8SMatthew G. Knepley /* TODO: Do we need different scatters for X and Y? */ 28229566063dSJacob Faibussowitsch PetscCall(PCPatch_ScatterLocal_Private(pc, i + pStart, patch->localRHS, patch->patchRHS, INSERT_VALUES, SCATTER_FORWARD, SCATTER_INTERIOR)); 28239566063dSJacob Faibussowitsch PetscCall((*patch->applysolver)(pc, i, patch->patchRHS, patch->patchUpdate)); 28249566063dSJacob Faibussowitsch PetscCall(PCPatch_ScatterLocal_Private(pc, i + pStart, patch->patchUpdate, patch->localUpdate, ADD_VALUES, SCATTER_REVERSE, SCATTER_INTERIOR)); 282548a46eb9SPierre Jolivet if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) PetscCall((*patch->updatemultiplicative)(pc, i, pStart)); 28264bbf5ea8SMatthew G. Knepley } 28274bbf5ea8SMatthew G. Knepley } 28289566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PC_Patch_Solve, pc, 0, 0, 0)); 28299566063dSJacob Faibussowitsch if (patch->user_patches) PetscCall(ISRestoreIndices(patch->iterationSet, &iterationSet)); 28304bbf5ea8SMatthew G. Knepley /* XXX: should we do this on the global vector? */ 28311baa6e33SBarry Smith if (patch->partition_of_unity) PetscCall(VecPointwiseMult(patch->localUpdate, patch->localUpdate, patch->dof_weights)); 28321202d238SPatrick Farrell /* Now patch->localUpdate contains the solution of the patch solves, so we need to combine them all. */ 28339566063dSJacob Faibussowitsch PetscCall(VecSet(y, 0.0)); 28349566063dSJacob Faibussowitsch PetscCall(VecGetArray(y, &globalUpdate)); 28359566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(patch->localUpdate, &localUpdate)); 28369566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(patch->sectionSF, MPIU_SCALAR, localUpdate, globalUpdate, MPI_SUM)); 28379566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(patch->sectionSF, MPIU_SCALAR, localUpdate, globalUpdate, MPI_SUM)); 28389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(patch->localUpdate, &localUpdate)); 28394bbf5ea8SMatthew G. Knepley 28404bbf5ea8SMatthew G. Knepley /* Now we need to send the global BC values through */ 28419566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &globalRHS)); 28429566063dSJacob Faibussowitsch PetscCall(ISGetSize(patch->globalBcNodes, &numBcs)); 28439566063dSJacob Faibussowitsch PetscCall(ISGetIndices(patch->globalBcNodes, &bcNodes)); 28449566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(x, &n)); 28454bbf5ea8SMatthew G. Knepley for (bc = 0; bc < numBcs; ++bc) { 28464bbf5ea8SMatthew G. Knepley const PetscInt idx = bcNodes[bc]; 28471202d238SPatrick Farrell if (idx < n) globalUpdate[idx] = globalRHS[idx]; 28484bbf5ea8SMatthew G. Knepley } 28494bbf5ea8SMatthew G. Knepley 28509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(patch->globalBcNodes, &bcNodes)); 28519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &globalRHS)); 28529566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(y, &globalUpdate)); 28534bbf5ea8SMatthew G. Knepley 2854648c30bcSBarry Smith PetscCall(PetscOptionsPopCreateViewerOff()); 28559566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PC_Patch_Apply, pc, 0, 0, 0)); 28563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28574bbf5ea8SMatthew G. Knepley } 28584bbf5ea8SMatthew G. Knepley 2859d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCReset_PATCH_Linear(PC pc) 2860d71ae5a4SJacob Faibussowitsch { 2861dadc69c5SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 2862dadc69c5SMatthew G. Knepley PetscInt i; 2863dadc69c5SMatthew G. Knepley 2864dadc69c5SMatthew G. Knepley PetscFunctionBegin; 2865dadc69c5SMatthew G. Knepley if (patch->solver) { 28669566063dSJacob Faibussowitsch for (i = 0; i < patch->npatch; ++i) PetscCall(KSPReset((KSP)patch->solver[i])); 2867dadc69c5SMatthew G. Knepley } 28683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2869dadc69c5SMatthew G. Knepley } 2870dadc69c5SMatthew G. Knepley 2871d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCReset_PATCH(PC pc) 2872d71ae5a4SJacob Faibussowitsch { 28734bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 28744bbf5ea8SMatthew G. Knepley PetscInt i; 28754bbf5ea8SMatthew G. Knepley 28764bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 28779566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&patch->sectionSF)); 28789566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&patch->cellCounts)); 28799566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&patch->pointCounts)); 28809566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&patch->cellNumbering)); 28819566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&patch->gtolCounts)); 28829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->gtol)); 28839566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->cells)); 28849566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->points)); 28859566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->dofs)); 28869566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->offs)); 28879566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&patch->patchSection)); 28889566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->ghostBcNodes)); 28899566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->globalBcNodes)); 28909566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&patch->gtolCountsWithArtificial)); 28919566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->gtolWithArtificial)); 28929566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->dofsWithArtificial)); 28939566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->offsWithArtificial)); 28949566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&patch->gtolCountsWithAll)); 28959566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->gtolWithAll)); 28969566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->dofsWithAll)); 28979566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->offsWithAll)); 28989566063dSJacob Faibussowitsch PetscCall(VecDestroy(&patch->cellMats)); 28999566063dSJacob Faibussowitsch PetscCall(VecDestroy(&patch->intFacetMats)); 29009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->allCells)); 29019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->intFacets)); 29029566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->extFacets)); 29039566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->intFacetsToPatchCell)); 29049566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&patch->intFacetCounts)); 29059566063dSJacob Faibussowitsch PetscCall(PetscSectionDestroy(&patch->extFacetCounts)); 29064bbf5ea8SMatthew G. Knepley 29079371c9d4SSatish Balay if (patch->dofSection) 29089371c9d4SSatish Balay for (i = 0; i < patch->nsubspaces; i++) PetscCall(PetscSectionDestroy(&patch->dofSection[i])); 29099566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->dofSection)); 29109566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->bs)); 29119566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->nodesPerCell)); 29129371c9d4SSatish Balay if (patch->cellNodeMap) 29139371c9d4SSatish Balay for (i = 0; i < patch->nsubspaces; i++) PetscCall(PetscFree(patch->cellNodeMap[i])); 29149566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->cellNodeMap)); 29159566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->subspaceOffsets)); 29164bbf5ea8SMatthew G. Knepley 29179566063dSJacob Faibussowitsch PetscCall((*patch->resetsolver)(pc)); 29184bbf5ea8SMatthew G. Knepley 291948a46eb9SPierre Jolivet if (patch->subspaces_to_exclude) PetscCall(PetscHSetIDestroy(&patch->subspaces_to_exclude)); 2920e4c66b91SPatrick Farrell 29219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&patch->localRHS)); 29229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&patch->localUpdate)); 29239566063dSJacob Faibussowitsch PetscCall(VecDestroy(&patch->patchRHS)); 29249566063dSJacob Faibussowitsch PetscCall(VecDestroy(&patch->patchUpdate)); 29259566063dSJacob Faibussowitsch PetscCall(VecDestroy(&patch->dof_weights)); 29264bbf5ea8SMatthew G. Knepley if (patch->patch_dof_weights) { 29279566063dSJacob Faibussowitsch for (i = 0; i < patch->npatch; ++i) PetscCall(VecDestroy(&patch->patch_dof_weights[i])); 29289566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->patch_dof_weights)); 29294bbf5ea8SMatthew G. Knepley } 29304bbf5ea8SMatthew G. Knepley if (patch->mat) { 29319566063dSJacob Faibussowitsch for (i = 0; i < patch->npatch; ++i) PetscCall(MatDestroy(&patch->mat[i])); 29329566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->mat)); 29335f824522SMatthew G. Knepley } 29340997d788SPatrick Farrell if (patch->matWithArtificial && !patch->isNonlinear) { 29359566063dSJacob Faibussowitsch for (i = 0; i < patch->npatch; ++i) PetscCall(MatDestroy(&patch->matWithArtificial[i])); 29369566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->matWithArtificial)); 293711ac8bb0SFlorian Wechsung } 29389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&patch->patchRHSWithArtificial)); 293996b79ebeSFlorian Wechsung if (patch->dofMappingWithoutToWithArtificial) { 29409566063dSJacob Faibussowitsch for (i = 0; i < patch->npatch; ++i) PetscCall(ISDestroy(&patch->dofMappingWithoutToWithArtificial[i])); 29419566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->dofMappingWithoutToWithArtificial)); 294296b79ebeSFlorian Wechsung } 29430904074fSPatrick Farrell if (patch->dofMappingWithoutToWithAll) { 29449566063dSJacob Faibussowitsch for (i = 0; i < patch->npatch; ++i) PetscCall(ISDestroy(&patch->dofMappingWithoutToWithAll[i])); 29459566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->dofMappingWithoutToWithAll)); 29460904074fSPatrick Farrell } 29479566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->sub_mat_type)); 29485f824522SMatthew G. Knepley if (patch->userIS) { 29499566063dSJacob Faibussowitsch for (i = 0; i < patch->npatch; ++i) PetscCall(ISDestroy(&patch->userIS[i])); 29509566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->userIS)); 29515f824522SMatthew G. Knepley } 29529566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->precomputedTensorLocations)); 29539566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->precomputedIntFacetTensorLocations)); 2954f98464cbSLawrence Mitchell 29550a545947SLisandro Dalcin patch->bs = NULL; 29564bbf5ea8SMatthew G. Knepley patch->cellNodeMap = NULL; 29577974b488SMatthew G. Knepley patch->nsubspaces = 0; 29589566063dSJacob Faibussowitsch PetscCall(ISDestroy(&patch->iterationSet)); 29595f824522SMatthew G. Knepley 2960648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&patch->viewerCells)); 2961648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&patch->viewerIntFacets)); 2962648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&patch->viewerPoints)); 2963648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&patch->viewerSection)); 2964648c30bcSBarry Smith PetscCall(PetscViewerDestroy(&patch->viewerMatrix)); 29653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29664bbf5ea8SMatthew G. Knepley } 29674bbf5ea8SMatthew G. Knepley 2968d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCDestroy_PATCH_Linear(PC pc) 2969d71ae5a4SJacob Faibussowitsch { 29704bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 29714bbf5ea8SMatthew G. Knepley PetscInt i; 29724bbf5ea8SMatthew G. Knepley 29734bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 2974dadc69c5SMatthew G. Knepley if (patch->solver) { 29759566063dSJacob Faibussowitsch for (i = 0; i < patch->npatch; ++i) PetscCall(KSPDestroy((KSP *)&patch->solver[i])); 29769566063dSJacob Faibussowitsch PetscCall(PetscFree(patch->solver)); 29774bbf5ea8SMatthew G. Knepley } 29783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2979dadc69c5SMatthew G. Knepley } 2980dadc69c5SMatthew G. Knepley 2981d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCDestroy_PATCH(PC pc) 2982d71ae5a4SJacob Faibussowitsch { 2983dadc69c5SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 2984dadc69c5SMatthew G. Knepley 2985dadc69c5SMatthew G. Knepley PetscFunctionBegin; 29869566063dSJacob Faibussowitsch PetscCall(PCReset_PATCH(pc)); 29879566063dSJacob Faibussowitsch PetscCall((*patch->destroysolver)(pc)); 29889566063dSJacob Faibussowitsch PetscCall(PetscFree(pc->data)); 29893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29904bbf5ea8SMatthew G. Knepley } 29914bbf5ea8SMatthew G. Knepley 2992d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCSetFromOptions_PATCH(PC pc, PetscOptionItems *PetscOptionsObject) 2993d71ae5a4SJacob Faibussowitsch { 29944bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 29954bbf5ea8SMatthew G. Knepley PCPatchConstructType patchConstructionType = PC_PATCH_STAR; 29965f824522SMatthew G. Knepley char sub_mat_type[PETSC_MAX_PATH_LEN]; 299710534d48SPatrick Farrell char option[PETSC_MAX_PATH_LEN]; 29985f824522SMatthew G. Knepley const char *prefix; 29994bbf5ea8SMatthew G. Knepley PetscBool flg, dimflg, codimflg; 30005f824522SMatthew G. Knepley MPI_Comm comm; 3001a48c39c8SPatrick Farrell PetscInt *ifields, nfields, k; 300261c4b389SFlorian Wechsung PCCompositeType loctype = PC_COMPOSITE_ADDITIVE; 30034bbf5ea8SMatthew G. Knepley 30044bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 30059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)pc, &comm)); 30069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetOptionsPrefix((PetscObject)pc, &prefix)); 3007d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "Patch solver options"); 300810534d48SPatrick Farrell 30099566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_save_operators", patch->classname)); 30109566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool(option, "Store all patch operators for lifetime of object?", "PCPatchSetSaveOperators", patch->save_operators, &patch->save_operators, &flg)); 301110534d48SPatrick Farrell 30129566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_precompute_element_tensors", patch->classname)); 30139566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool(option, "Compute each element tensor only once?", "PCPatchSetPrecomputeElementTensors", patch->precomputeElementTensors, &patch->precomputeElementTensors, &flg)); 30149566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_partition_of_unity", patch->classname)); 30159566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool(option, "Weight contributions by dof multiplicity?", "PCPatchSetPartitionOfUnity", patch->partition_of_unity, &patch->partition_of_unity, &flg)); 301610534d48SPatrick Farrell 30179566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_local_type", patch->classname)); 30189566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum(option, "Type of local solver composition (additive or multiplicative)", "PCPatchSetLocalComposition", PCCompositeTypes, (PetscEnum)loctype, (PetscEnum *)&loctype, &flg)); 30199566063dSJacob Faibussowitsch if (flg) PetscCall(PCPatchSetLocalComposition(pc, loctype)); 30209566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_dense_inverse", patch->classname)); 30219566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool(option, "Compute inverses of patch matrices and apply directly? Ignores KSP/PC settings on patch.", "PCPatchSetDenseInverse", patch->denseinverse, &patch->denseinverse, &flg)); 30229566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_construct_dim", patch->classname)); 30239566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt(option, "What dimension of mesh point to construct patches by? (0 = vertices)", "PCPATCH", patch->dim, &patch->dim, &dimflg)); 30249566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_construct_codim", patch->classname)); 30259566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt(option, "What co-dimension of mesh point to construct patches by? (0 = cells)", "PCPATCH", patch->codim, &patch->codim, &codimflg)); 302608401ef6SPierre Jolivet PetscCheck(!dimflg || !codimflg, comm, PETSC_ERR_ARG_WRONG, "Can only set one of dimension or co-dimension"); 302710534d48SPatrick Farrell 30289566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_construct_type", patch->classname)); 30299566063dSJacob Faibussowitsch PetscCall(PetscOptionsEnum(option, "How should the patches be constructed?", "PCPatchSetConstructType", PCPatchConstructTypes, (PetscEnum)patchConstructionType, (PetscEnum *)&patchConstructionType, &flg)); 30309566063dSJacob Faibussowitsch if (flg) PetscCall(PCPatchSetConstructType(pc, patchConstructionType, NULL, NULL)); 303110534d48SPatrick Farrell 30329566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_vanka_dim", patch->classname)); 30339566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt(option, "Topological dimension of entities for Vanka to ignore", "PCPATCH", patch->vankadim, &patch->vankadim, &flg)); 303410534d48SPatrick Farrell 30359566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_ignore_dim", patch->classname)); 30369566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt(option, "Topological dimension of entities for completion to ignore", "PCPATCH", patch->ignoredim, &patch->ignoredim, &flg)); 303710534d48SPatrick Farrell 30389566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_pardecomp_overlap", patch->classname)); 30399566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt(option, "What overlap should we use in construct type pardecomp?", "PCPATCH", patch->pardecomp_overlap, &patch->pardecomp_overlap, &flg)); 3040b525f888SPatrick Farrell 30419566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_sub_mat_type", patch->classname)); 30429566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList(option, "Matrix type for patch solves", "PCPatchSetSubMatType", MatList, NULL, sub_mat_type, PETSC_MAX_PATH_LEN, &flg)); 30439566063dSJacob Faibussowitsch if (flg) PetscCall(PCPatchSetSubMatType(pc, sub_mat_type)); 304410534d48SPatrick Farrell 30459566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_symmetrise_sweep", patch->classname)); 30469566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool(option, "Go start->end, end->start?", "PCPATCH", patch->symmetrise_sweep, &patch->symmetrise_sweep, &flg)); 3047e4c66b91SPatrick Farrell 3048a48c39c8SPatrick Farrell /* If the user has set the number of subspaces, use that for the buffer size, 3049a48c39c8SPatrick Farrell otherwise use a large number */ 3050a48c39c8SPatrick Farrell if (patch->nsubspaces <= 0) { 3051a48c39c8SPatrick Farrell nfields = 128; 3052a48c39c8SPatrick Farrell } else { 3053a48c39c8SPatrick Farrell nfields = patch->nsubspaces; 3054a48c39c8SPatrick Farrell } 30559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nfields, &ifields)); 30569566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_exclude_subspaces", patch->classname)); 30579566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetIntArray(((PetscObject)pc)->options, ((PetscObject)pc)->prefix, option, ifields, &nfields, &flg)); 305808401ef6SPierre Jolivet PetscCheck(!flg || !(patchConstructionType == PC_PATCH_USER), comm, PETSC_ERR_ARG_INCOMP, "We cannot support excluding a subspace with user patches because we do not index patches with a mesh point"); 3059e4c66b91SPatrick Farrell if (flg) { 30609566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(patch->subspaces_to_exclude)); 306148a46eb9SPierre Jolivet for (k = 0; k < nfields; k++) PetscCall(PetscHSetIAdd(patch->subspaces_to_exclude, ifields[k])); 3062e4c66b91SPatrick Farrell } 30639566063dSJacob Faibussowitsch PetscCall(PetscFree(ifields)); 30645f824522SMatthew G. Knepley 30659566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_patches_view", patch->classname)); 30669566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool(option, "Print out information during patch construction", "PCPATCH", patch->viewPatches, &patch->viewPatches, &flg)); 30679566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_cells_view", patch->classname)); 3068648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(comm, ((PetscObject)pc)->options, prefix, option, &patch->viewerCells, &patch->formatCells, &patch->viewCells)); 30699566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_interior_facets_view", patch->classname)); 3070648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(comm, ((PetscObject)pc)->options, prefix, option, &patch->viewerIntFacets, &patch->formatIntFacets, &patch->viewIntFacets)); 30719566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_exterior_facets_view", patch->classname)); 3072648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(comm, ((PetscObject)pc)->options, prefix, option, &patch->viewerExtFacets, &patch->formatExtFacets, &patch->viewExtFacets)); 30739566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_points_view", patch->classname)); 3074648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(comm, ((PetscObject)pc)->options, prefix, option, &patch->viewerPoints, &patch->formatPoints, &patch->viewPoints)); 30759566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_section_view", patch->classname)); 3076648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(comm, ((PetscObject)pc)->options, prefix, option, &patch->viewerSection, &patch->formatSection, &patch->viewSection)); 30779566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(option, PETSC_MAX_PATH_LEN, "-%s_patch_mat_view", patch->classname)); 3078648c30bcSBarry Smith PetscCall(PetscOptionsCreateViewer(comm, ((PetscObject)pc)->options, prefix, option, &patch->viewerMatrix, &patch->formatMatrix, &patch->viewMatrix)); 3079d0609cedSBarry Smith PetscOptionsHeadEnd(); 30805f824522SMatthew G. Knepley patch->optionsSet = PETSC_TRUE; 30813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30824bbf5ea8SMatthew G. Knepley } 30834bbf5ea8SMatthew G. Knepley 3084d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCSetUpOnBlocks_PATCH(PC pc) 3085d71ae5a4SJacob Faibussowitsch { 30864bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 30874bbf5ea8SMatthew G. Knepley KSPConvergedReason reason; 30884bbf5ea8SMatthew G. Knepley PetscInt i; 30894bbf5ea8SMatthew G. Knepley 30904bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 3091a1eac568SLawrence Mitchell if (!patch->save_operators) { 3092a1eac568SLawrence Mitchell /* Can't do this here because the sub KSPs don't have an operator attached yet. */ 30933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3094a1eac568SLawrence Mitchell } 3095c73d2cf6SLawrence Mitchell if (patch->denseinverse) { 3096c73d2cf6SLawrence Mitchell /* No solvers */ 30973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3098c73d2cf6SLawrence Mitchell } 30994bbf5ea8SMatthew G. Knepley for (i = 0; i < patch->npatch; ++i) { 310048a46eb9SPierre Jolivet if (!((KSP)patch->solver[i])->setfromoptionscalled) PetscCall(KSPSetFromOptions((KSP)patch->solver[i])); 31019566063dSJacob Faibussowitsch PetscCall(KSPSetUp((KSP)patch->solver[i])); 31029566063dSJacob Faibussowitsch PetscCall(KSPGetConvergedReason((KSP)patch->solver[i], &reason)); 3103c0decd05SBarry Smith if (reason == KSP_DIVERGED_PC_FAILED) pc->failedreason = PC_SUBPC_ERROR; 31044bbf5ea8SMatthew G. Knepley } 31053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31064bbf5ea8SMatthew G. Knepley } 31074bbf5ea8SMatthew G. Knepley 3108d71ae5a4SJacob Faibussowitsch static PetscErrorCode PCView_PATCH(PC pc, PetscViewer viewer) 3109d71ae5a4SJacob Faibussowitsch { 31104bbf5ea8SMatthew G. Knepley PC_PATCH *patch = (PC_PATCH *)pc->data; 31114bbf5ea8SMatthew G. Knepley PetscViewer sviewer; 31124bbf5ea8SMatthew G. Knepley PetscBool isascii; 31134bbf5ea8SMatthew G. Knepley PetscMPIInt rank; 31144bbf5ea8SMatthew G. Knepley 31154bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 31164bbf5ea8SMatthew G. Knepley /* TODO Redo tabbing with set tbas in new style */ 31179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 31183ba16761SJacob Faibussowitsch if (!isascii) PetscFunctionReturn(PETSC_SUCCESS); 31199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)pc), &rank)); 31209566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 312163a3b9bcSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Subspace Correction preconditioner with %" PetscInt_FMT " patches\n", patch->npatch)); 312261c4b389SFlorian Wechsung if (patch->local_composition_type == PC_COMPOSITE_MULTIPLICATIVE) { 31239566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Schwarz type: multiplicative\n")); 3124e047a90bSFlorian Wechsung } else { 31259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Schwarz type: additive\n")); 3126c2e6f3c0SFlorian Wechsung } 31279566063dSJacob Faibussowitsch if (patch->partition_of_unity) PetscCall(PetscViewerASCIIPrintf(viewer, "Weighting by partition of unity\n")); 31289566063dSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "Not weighting by partition of unity\n")); 31299566063dSJacob Faibussowitsch if (patch->symmetrise_sweep) PetscCall(PetscViewerASCIIPrintf(viewer, "Symmetrising sweep (start->end, then end->start)\n")); 31309566063dSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "Not symmetrising sweep\n")); 31319566063dSJacob Faibussowitsch if (!patch->precomputeElementTensors) PetscCall(PetscViewerASCIIPrintf(viewer, "Not precomputing element tensors (overlapping cells rebuilt in every patch assembly)\n")); 31329566063dSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "Precomputing element tensors (each cell assembled only once)\n")); 31339566063dSJacob Faibussowitsch if (!patch->save_operators) PetscCall(PetscViewerASCIIPrintf(viewer, "Not saving patch operators (rebuilt every PCApply)\n")); 31349566063dSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "Saving patch operators (rebuilt every PCSetUp)\n")); 31359566063dSJacob Faibussowitsch if (patch->patchconstructop == PCPatchConstruct_Star) PetscCall(PetscViewerASCIIPrintf(viewer, "Patch construction operator: star\n")); 31369566063dSJacob Faibussowitsch else if (patch->patchconstructop == PCPatchConstruct_Vanka) PetscCall(PetscViewerASCIIPrintf(viewer, "Patch construction operator: Vanka\n")); 31379566063dSJacob Faibussowitsch else if (patch->patchconstructop == PCPatchConstruct_User) PetscCall(PetscViewerASCIIPrintf(viewer, "Patch construction operator: user-specified\n")); 31389566063dSJacob Faibussowitsch else PetscCall(PetscViewerASCIIPrintf(viewer, "Patch construction operator: unknown\n")); 31395d30859aSPatrick Farrell 3140c73d2cf6SLawrence Mitchell if (patch->denseinverse) { 31419566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Explicitly forming dense inverse and applying patch solver via MatMult.\n")); 3142c73d2cf6SLawrence Mitchell } else { 31435d30859aSPatrick Farrell if (patch->isNonlinear) { 31449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "SNES on patches (all same):\n")); 31455d30859aSPatrick Farrell } else { 31469566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "KSP on patches (all same):\n")); 31475d30859aSPatrick Farrell } 3148dadc69c5SMatthew G. Knepley if (patch->solver) { 31499566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 3150dd400576SPatrick Sanan if (rank == 0) { 31519566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(sviewer)); 31529566063dSJacob Faibussowitsch PetscCall(PetscObjectView(patch->solver[0], sviewer)); 31539566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(sviewer)); 31544bbf5ea8SMatthew G. Knepley } 31559566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 31564bbf5ea8SMatthew G. Knepley } else { 31579566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 31589566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Solver not yet set.\n")); 31599566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 31604bbf5ea8SMatthew G. Knepley } 3161c73d2cf6SLawrence Mitchell } 31629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 31633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31644bbf5ea8SMatthew G. Knepley } 31654bbf5ea8SMatthew G. Knepley 3166e5893cccSMatthew G. Knepley /*MC 3167f1580f4eSBarry Smith PCPATCH - A `PC` object that encapsulates flexible definition of blocks for overlapping and non-overlapping 316898ed095eSMatthew G. Knepley small block additive preconditioners. Block definition is based on topology from 3169f1580f4eSBarry Smith a `DM` and equation numbering from a `PetscSection`. 3170e5893cccSMatthew G. Knepley 3171e5893cccSMatthew G. Knepley Options Database Keys: 3172e5893cccSMatthew G. Knepley + -pc_patch_cells_view - Views the process local cell numbers for each patch 3173e5893cccSMatthew G. Knepley . -pc_patch_points_view - Views the process local mesh point numbers for each patch 3174e5893cccSMatthew G. Knepley . -pc_patch_g2l_view - Views the map between global dofs and patch local dofs for each patch 3175e5893cccSMatthew G. Knepley . -pc_patch_patches_view - Views the global dofs associated with each patch and its boundary 3176e5893cccSMatthew G. Knepley - -pc_patch_sub_mat_view - Views the matrix associated with each patch 3177e5893cccSMatthew G. Knepley 3178e5893cccSMatthew G. Knepley Level: intermediate 3179e5893cccSMatthew G. Knepley 3180562efe2eSBarry Smith .seealso: [](ch_ksp), `PCType`, `PCCreate()`, `PCSetType()`, `PCASM`, `PCJACOBI`, `PCPBJACOBI`, `PCVPBJACOBI`, `SNESPATCH` 3181e5893cccSMatthew G. Knepley M*/ 3182d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode PCCreate_Patch(PC pc) 3183d71ae5a4SJacob Faibussowitsch { 31844bbf5ea8SMatthew G. Knepley PC_PATCH *patch; 31854bbf5ea8SMatthew G. Knepley 31864bbf5ea8SMatthew G. Knepley PetscFunctionBegin; 3187f39ec787SMatthew G. Knepley PetscCall(PetscCitationsRegister(PCPatchCitation, &PCPatchcite)); 31884dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&patch)); 31894bbf5ea8SMatthew G. Knepley 319048a46eb9SPierre Jolivet if (patch->subspaces_to_exclude) PetscCall(PetscHSetIDestroy(&patch->subspaces_to_exclude)); 31919566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&patch->subspaces_to_exclude)); 3192e4c66b91SPatrick Farrell 319310534d48SPatrick Farrell patch->classname = "pc"; 3194debbdec3SPatrick Farrell patch->isNonlinear = PETSC_FALSE; 319510534d48SPatrick Farrell 31964bbf5ea8SMatthew G. Knepley /* Set some defaults */ 31975f824522SMatthew G. Knepley patch->combined = PETSC_FALSE; 31984bbf5ea8SMatthew G. Knepley patch->save_operators = PETSC_TRUE; 319961c4b389SFlorian Wechsung patch->local_composition_type = PC_COMPOSITE_ADDITIVE; 3200fa84ea4cSLawrence Mitchell patch->precomputeElementTensors = PETSC_FALSE; 32014bbf5ea8SMatthew G. Knepley patch->partition_of_unity = PETSC_FALSE; 32024bbf5ea8SMatthew G. Knepley patch->codim = -1; 32034bbf5ea8SMatthew G. Knepley patch->dim = -1; 32044bbf5ea8SMatthew G. Knepley patch->vankadim = -1; 32055f824522SMatthew G. Knepley patch->ignoredim = -1; 3206b525f888SPatrick Farrell patch->pardecomp_overlap = 0; 32074bbf5ea8SMatthew G. Knepley patch->patchconstructop = PCPatchConstruct_Star; 32084bbf5ea8SMatthew G. Knepley patch->symmetrise_sweep = PETSC_FALSE; 32095f824522SMatthew G. Knepley patch->npatch = 0; 32104bbf5ea8SMatthew G. Knepley patch->userIS = NULL; 32115f824522SMatthew G. Knepley patch->optionsSet = PETSC_FALSE; 32124bbf5ea8SMatthew G. Knepley patch->iterationSet = NULL; 32134bbf5ea8SMatthew G. Knepley patch->user_patches = PETSC_FALSE; 32149566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATDENSE, (char **)&patch->sub_mat_type)); 32155f824522SMatthew G. Knepley patch->viewPatches = PETSC_FALSE; 32165f824522SMatthew G. Knepley patch->viewCells = PETSC_FALSE; 32175f824522SMatthew G. Knepley patch->viewPoints = PETSC_FALSE; 32185f824522SMatthew G. Knepley patch->viewSection = PETSC_FALSE; 32195f824522SMatthew G. Knepley patch->viewMatrix = PETSC_FALSE; 32209d4fc724SLawrence Mitchell patch->densesolve = NULL; 3221dadc69c5SMatthew G. Knepley patch->setupsolver = PCSetUp_PATCH_Linear; 3222dadc69c5SMatthew G. Knepley patch->applysolver = PCApply_PATCH_Linear; 3223dadc69c5SMatthew G. Knepley patch->resetsolver = PCReset_PATCH_Linear; 3224dadc69c5SMatthew G. Knepley patch->destroysolver = PCDestroy_PATCH_Linear; 32256c9c532dSPatrick Farrell patch->updatemultiplicative = PCUpdateMultiplicative_PATCH_Linear; 322647aca4a6SPatrick Farrell patch->dofMappingWithoutToWithArtificial = NULL; 322747aca4a6SPatrick Farrell patch->dofMappingWithoutToWithAll = NULL; 32284bbf5ea8SMatthew G. Knepley 32294bbf5ea8SMatthew G. Knepley pc->data = (void *)patch; 32304bbf5ea8SMatthew G. Knepley pc->ops->apply = PCApply_PATCH; 32310a545947SLisandro Dalcin pc->ops->applytranspose = NULL; /* PCApplyTranspose_PATCH; */ 32324bbf5ea8SMatthew G. Knepley pc->ops->setup = PCSetUp_PATCH; 32334bbf5ea8SMatthew G. Knepley pc->ops->reset = PCReset_PATCH; 32344bbf5ea8SMatthew G. Knepley pc->ops->destroy = PCDestroy_PATCH; 32354bbf5ea8SMatthew G. Knepley pc->ops->setfromoptions = PCSetFromOptions_PATCH; 32364bbf5ea8SMatthew G. Knepley pc->ops->setuponblocks = PCSetUpOnBlocks_PATCH; 32374bbf5ea8SMatthew G. Knepley pc->ops->view = PCView_PATCH; 32380a545947SLisandro Dalcin pc->ops->applyrichardson = NULL; 32393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32404bbf5ea8SMatthew G. Knepley } 3241