1 2 3 4 #include <petsc/private/pcimpl.h> 5 #include <petscksp.h> /*I "petscksp.h" I*/ 6 #include <petscdm.h> /*I "petscdm.h" I*/ 7 8 #include "telescope.h" 9 10 /* 11 PCTelescopeSetUp_default() 12 PCTelescopeMatCreate_default() 13 14 default 15 16 // scatter in 17 x(comm) -> xtmp(comm) 18 19 xred(subcomm) <- xtmp 20 yred(subcomm) 21 22 yred(subcomm) --> xtmp 23 24 // scatter out 25 xtmp(comm) -> y(comm) 26 */ 27 28 PetscBool isActiveRank(PetscSubcomm scomm) 29 { 30 if (scomm->color == 0) { return PETSC_TRUE; } 31 else { return PETSC_FALSE; } 32 } 33 34 #undef __FUNCT__ 35 #define __FUNCT__ "private_PCTelescopeGetSubDM" 36 DM private_PCTelescopeGetSubDM(PC_Telescope sred) 37 { 38 DM subdm = NULL; 39 40 if (!isActiveRank(sred->psubcomm)) { subdm = NULL; } 41 else { 42 switch (sred->sr_type) { 43 case TELESCOPE_DEFAULT: subdm = NULL; 44 break; 45 case TELESCOPE_DMDA: subdm = ((PC_Telescope_DMDACtx*)sred->dm_ctx)->dmrepart; 46 break; 47 case TELESCOPE_DMPLEX: subdm = NULL; 48 break; 49 } 50 } 51 return(subdm); 52 } 53 54 #undef __FUNCT__ 55 #define __FUNCT__ "PCTelescopeSetUp_default" 56 PetscErrorCode PCTelescopeSetUp_default(PC pc,PC_Telescope sred) 57 { 58 PetscErrorCode ierr; 59 PetscInt m,M,bs,st,ed; 60 Vec x,xred,yred,xtmp; 61 Mat B; 62 MPI_Comm comm,subcomm; 63 VecScatter scatter; 64 IS isin; 65 66 PetscFunctionBegin; 67 ierr = PetscInfo(pc,"PCTelescope: setup (default)\n");CHKERRQ(ierr); 68 comm = PetscSubcommParent(sred->psubcomm); 69 subcomm = PetscSubcommChild(sred->psubcomm); 70 71 ierr = PCGetOperators(pc,NULL,&B);CHKERRQ(ierr); 72 ierr = MatGetSize(B,&M,NULL);CHKERRQ(ierr); 73 ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr); 74 ierr = MatCreateVecs(B,&x,NULL);CHKERRQ(ierr); 75 76 xred = NULL; 77 m = 0; 78 if (isActiveRank(sred->psubcomm)) { 79 ierr = VecCreate(subcomm,&xred);CHKERRQ(ierr); 80 ierr = VecSetSizes(xred,PETSC_DECIDE,M);CHKERRQ(ierr); 81 ierr = VecSetBlockSize(xred,bs);CHKERRQ(ierr); 82 ierr = VecSetFromOptions(xred);CHKERRQ(ierr); 83 ierr = VecGetLocalSize(xred,&m); 84 } 85 86 yred = NULL; 87 if (isActiveRank(sred->psubcomm)) { 88 ierr = VecDuplicate(xred,&yred);CHKERRQ(ierr); 89 } 90 91 ierr = VecCreate(comm,&xtmp);CHKERRQ(ierr); 92 ierr = VecSetSizes(xtmp,m,PETSC_DECIDE);CHKERRQ(ierr); 93 ierr = VecSetBlockSize(xtmp,bs);CHKERRQ(ierr); 94 ierr = VecSetType(xtmp,((PetscObject)x)->type_name);CHKERRQ(ierr); 95 96 if (isActiveRank(sred->psubcomm)) { 97 ierr = VecGetOwnershipRange(xred,&st,&ed);CHKERRQ(ierr); 98 ierr = ISCreateStride(comm,(ed-st),st,1,&isin);CHKERRQ(ierr); 99 } else { 100 ierr = VecGetOwnershipRange(x,&st,&ed);CHKERRQ(ierr); 101 ierr = ISCreateStride(comm,0,st,1,&isin);CHKERRQ(ierr); 102 } 103 ierr = ISSetBlockSize(isin,bs);CHKERRQ(ierr); 104 105 ierr = VecScatterCreate(x,isin,xtmp,NULL,&scatter);CHKERRQ(ierr); 106 107 sred->isin = isin; 108 sred->scatter = scatter; 109 sred->xred = xred; 110 sred->yred = yred; 111 sred->xtmp = xtmp; 112 ierr = VecDestroy(&x);CHKERRQ(ierr); 113 PetscFunctionReturn(0); 114 } 115 116 #undef __FUNCT__ 117 #define __FUNCT__ "PCTelescopeMatCreate_default" 118 PetscErrorCode PCTelescopeMatCreate_default(PC pc,PC_Telescope sred,MatReuse reuse,Mat *A) 119 { 120 PetscErrorCode ierr; 121 MPI_Comm comm,subcomm; 122 Mat Bred,B; 123 PetscInt nr,nc; 124 IS isrow,iscol; 125 Mat Blocal,*_Blocal; 126 127 PetscFunctionBegin; 128 ierr = PetscInfo(pc,"PCTelescope: updating the redundant preconditioned operator (default)\n");CHKERRQ(ierr); 129 ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr); 130 subcomm = PetscSubcommChild(sred->psubcomm); 131 ierr = PCGetOperators(pc,NULL,&B);CHKERRQ(ierr); 132 ierr = MatGetSize(B,&nr,&nc);CHKERRQ(ierr); 133 isrow = sred->isin; 134 ierr = ISCreateStride(comm,nc,0,1,&iscol);CHKERRQ(ierr); 135 ierr = MatGetSubMatrices(B,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&_Blocal);CHKERRQ(ierr); 136 Blocal = *_Blocal; 137 ierr = PetscFree(_Blocal);CHKERRQ(ierr); 138 Bred = NULL; 139 if (isActiveRank(sred->psubcomm)) { 140 PetscInt mm; 141 142 if (reuse != MAT_INITIAL_MATRIX) { Bred = *A; } 143 144 ierr = MatGetSize(Blocal,&mm,NULL);CHKERRQ(ierr); 145 ierr = MatCreateMPIMatConcatenateSeqMat(subcomm,Blocal,mm,reuse,&Bred);CHKERRQ(ierr); 146 } 147 *A = Bred; 148 ierr = ISDestroy(&iscol);CHKERRQ(ierr); 149 ierr = MatDestroy(&Blocal);CHKERRQ(ierr); 150 PetscFunctionReturn(0); 151 } 152 153 #undef __FUNCT__ 154 #define __FUNCT__ "PCTelescopeMatNullSpaceCreate_default" 155 PetscErrorCode PCTelescopeMatNullSpaceCreate_default(PC pc,PC_Telescope sred,Mat sub_mat) 156 { 157 PetscErrorCode ierr; 158 MatNullSpace nullspace,sub_nullspace; 159 Mat A,B; 160 PetscBool has_const; 161 PetscInt i,k,n; 162 const Vec *vecs; 163 Vec *sub_vecs; 164 MPI_Comm subcomm; 165 166 PetscFunctionBegin; 167 ierr = PCGetOperators(pc,&A,&B);CHKERRQ(ierr); 168 ierr = MatGetNullSpace(B,&nullspace);CHKERRQ(ierr); 169 if (!nullspace) return(0); 170 171 ierr = PetscInfo(pc,"PCTelescope: generating nullspace (default)\n");CHKERRQ(ierr); 172 subcomm = PetscSubcommChild(sred->psubcomm); 173 ierr = MatNullSpaceGetVecs(nullspace,&has_const,&n,&vecs);CHKERRQ(ierr); 174 175 if (isActiveRank(sred->psubcomm)) { 176 if (n) { 177 ierr = VecDuplicateVecs(sred->xred,n,&sub_vecs);CHKERRQ(ierr); 178 } 179 } 180 181 /* copy entries */ 182 for (k=0; k<n; k++) { 183 const PetscScalar *x_array; 184 PetscScalar *LA_sub_vec; 185 PetscInt st,ed,bs; 186 187 /* pull in vector x->xtmp */ 188 ierr = VecScatterBegin(sred->scatter,vecs[k],sred->xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 189 ierr = VecScatterEnd(sred->scatter,vecs[k],sred->xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 190 /* copy vector entires into xred */ 191 ierr = VecGetBlockSize(sred->xtmp,&bs);CHKERRQ(ierr); 192 ierr = VecGetArrayRead(sred->xtmp,&x_array);CHKERRQ(ierr); 193 if (sub_vecs[k]) { 194 ierr = VecGetOwnershipRange(sub_vecs[k],&st,&ed);CHKERRQ(ierr); 195 ierr = VecGetArray(sub_vecs[k],&LA_sub_vec);CHKERRQ(ierr); 196 for (i=0; i<ed-st; i++) { 197 LA_sub_vec[i] = x_array[i]; 198 } 199 ierr = VecRestoreArray(sub_vecs[k],&LA_sub_vec);CHKERRQ(ierr); 200 } 201 ierr = VecRestoreArrayRead(sred->xtmp,&x_array);CHKERRQ(ierr); 202 } 203 204 if (isActiveRank(sred->psubcomm)) { 205 /* create new nullspace for redundant object */ 206 ierr = MatNullSpaceCreate(subcomm,has_const,n,sub_vecs,&sub_nullspace);CHKERRQ(ierr); 207 /* attach redundant nullspace to Bred */ 208 ierr = MatSetNullSpace(sub_mat,sub_nullspace);CHKERRQ(ierr); 209 ierr = VecDestroyVecs(n,&sub_vecs);CHKERRQ(ierr); 210 } 211 PetscFunctionReturn(0); 212 } 213 214 #undef __FUNCT__ 215 #define __FUNCT__ "PCView_Telescope" 216 static PetscErrorCode PCView_Telescope(PC pc,PetscViewer viewer) 217 { 218 PC_Telescope sred = (PC_Telescope)pc->data; 219 PetscErrorCode ierr; 220 PetscBool iascii,isstring; 221 PetscViewer subviewer; 222 223 PetscFunctionBegin; 224 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 225 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSTRING,&isstring);CHKERRQ(ierr); 226 if (iascii) { 227 if (!sred->psubcomm) { 228 ierr = PetscViewerASCIIPrintf(viewer," Telescope: preconditioner not yet setup\n");CHKERRQ(ierr); 229 } else { 230 MPI_Comm comm,subcomm; 231 PetscMPIInt comm_size,subcomm_size; 232 DM dm,subdm; 233 234 ierr = PCGetDM(pc,&dm);CHKERRQ(ierr); 235 subdm = private_PCTelescopeGetSubDM(sred); 236 comm = PetscSubcommParent(sred->psubcomm); 237 subcomm = PetscSubcommChild(sred->psubcomm); 238 ierr = MPI_Comm_size(comm,&comm_size);CHKERRQ(ierr); 239 ierr = MPI_Comm_size(subcomm,&subcomm_size);CHKERRQ(ierr); 240 241 ierr = PetscViewerASCIIPrintf(viewer," Telescope: parent comm size reduction factor = %D\n",sred->redfactor);CHKERRQ(ierr); 242 ierr = PetscViewerASCIIPrintf(viewer," Telescope: comm_size = %d , subcomm_size = %d\n",(int)comm_size,(int)subcomm_size);CHKERRQ(ierr); 243 ierr = PetscViewerGetSubViewer(viewer,subcomm,&subviewer);CHKERRQ(ierr); 244 if (isActiveRank(sred->psubcomm)) { 245 ierr = PetscViewerASCIIPushTab(subviewer);CHKERRQ(ierr); 246 247 if (dm && sred->ignore_dm) { 248 ierr = PetscViewerASCIIPrintf(subviewer," Telescope: ignoring DM\n");CHKERRQ(ierr); 249 } 250 if (sred->ignore_kspcomputeoperators) { 251 ierr = PetscViewerASCIIPrintf(subviewer," Telescope: ignoring KSPComputeOperators\n");CHKERRQ(ierr); 252 } 253 switch (sred->sr_type) { 254 case TELESCOPE_DEFAULT: 255 ierr = PetscViewerASCIIPrintf(subviewer," Telescope: using default setup\n");CHKERRQ(ierr); 256 break; 257 case TELESCOPE_DMDA: 258 ierr = PetscViewerASCIIPrintf(subviewer," Telescope: DMDA detected\n");CHKERRQ(ierr); 259 ierr = DMView_DMDAShort(subdm,subviewer);CHKERRQ(ierr); 260 break; 261 case TELESCOPE_DMPLEX: 262 ierr = PetscViewerASCIIPrintf(subviewer," Telescope: DMPLEX detected\n");CHKERRQ(ierr); 263 break; 264 } 265 266 ierr = KSPView(sred->ksp,subviewer);CHKERRQ(ierr); 267 ierr = PetscViewerASCIIPopTab(subviewer);CHKERRQ(ierr); 268 } 269 ierr = PetscViewerRestoreSubViewer(viewer,subcomm,&subviewer);CHKERRQ(ierr); 270 } 271 } 272 PetscFunctionReturn(0); 273 } 274 275 #undef __FUNCT__ 276 #define __FUNCT__ "PCSetUp_Telescope" 277 static PetscErrorCode PCSetUp_Telescope(PC pc) 278 { 279 PC_Telescope sred = (PC_Telescope)pc->data; 280 PetscErrorCode ierr; 281 MPI_Comm comm,subcomm=0; 282 PCTelescopeType sr_type; 283 284 PetscFunctionBegin; 285 ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr); 286 287 /* subcomm definition */ 288 if (!pc->setupcalled) { 289 if (!sred->psubcomm) { 290 ierr = PetscSubcommCreate(comm,&sred->psubcomm);CHKERRQ(ierr); 291 ierr = PetscSubcommSetNumber(sred->psubcomm,sred->redfactor);CHKERRQ(ierr); 292 ierr = PetscSubcommSetType(sred->psubcomm,PETSC_SUBCOMM_INTERLACED);CHKERRQ(ierr); 293 /* disable runtime switch of psubcomm type, e.g., '-psubcomm_type interlaced */ 294 /* ierr = PetscSubcommSetFromOptions(sred->psubcomm);CHKERRQ(ierr); */ 295 ierr = PetscLogObjectMemory((PetscObject)pc,sizeof(PetscSubcomm));CHKERRQ(ierr); 296 /* create a new PC that processors in each subcomm have copy of */ 297 } 298 } 299 subcomm = PetscSubcommChild(sred->psubcomm); 300 301 /* internal KSP */ 302 if (!pc->setupcalled) { 303 const char *prefix; 304 305 if (isActiveRank(sred->psubcomm)) { 306 ierr = KSPCreate(subcomm,&sred->ksp);CHKERRQ(ierr); 307 ierr = KSPSetErrorIfNotConverged(sred->ksp,pc->erroriffailure);CHKERRQ(ierr); 308 ierr = PetscObjectIncrementTabLevel((PetscObject)sred->ksp,(PetscObject)pc,1);CHKERRQ(ierr); 309 ierr = PetscLogObjectParent((PetscObject)pc,(PetscObject)sred->ksp);CHKERRQ(ierr); 310 ierr = KSPSetType(sred->ksp,KSPPREONLY);CHKERRQ(ierr); 311 ierr = KSPSetInitialGuessNonzero(sred->ksp,pc->nonzero_guess);CHKERRQ(ierr); 312 ierr = PCGetOptionsPrefix(pc,&prefix);CHKERRQ(ierr); 313 ierr = KSPSetOptionsPrefix(sred->ksp,prefix);CHKERRQ(ierr); 314 ierr = KSPAppendOptionsPrefix(sred->ksp,"telescope_");CHKERRQ(ierr); 315 } 316 } 317 /* Determine type of setup/update */ 318 if (!pc->setupcalled) { 319 PetscBool has_dm,same; 320 DM dm; 321 322 sr_type = TELESCOPE_DEFAULT; 323 has_dm = PETSC_FALSE; 324 ierr = PCGetDM(pc,&dm);CHKERRQ(ierr); 325 if (dm) { has_dm = PETSC_TRUE; } 326 if (has_dm) { 327 /* check for dmda */ 328 ierr = PetscObjectTypeCompare((PetscObject)dm,DMDA,&same);CHKERRQ(ierr); 329 if (same) { 330 ierr = PetscInfo(pc,"PCTelescope: found DMDA\n");CHKERRQ(ierr); 331 sr_type = TELESCOPE_DMDA; 332 } 333 /* check for dmplex */ 334 ierr = PetscObjectTypeCompare((PetscObject)dm,DMPLEX,&same);CHKERRQ(ierr); 335 if (same) { 336 PetscInfo(pc,"PCTelescope: found DMPLEX\n"); 337 sr_type = TELESCOPE_DMPLEX; 338 } 339 } 340 341 if (sred->ignore_dm) { 342 PetscInfo(pc,"PCTelescope: ignore DM\n"); 343 sr_type = TELESCOPE_DEFAULT; 344 } 345 sred->sr_type = sr_type; 346 } else { 347 sr_type = sred->sr_type; 348 } 349 350 /* set function pointers for repartition setup, matrix creation/update, matrix nullspace and reset functionality */ 351 switch (sr_type) { 352 case TELESCOPE_DEFAULT: 353 sred->pctelescope_setup_type = PCTelescopeSetUp_default; 354 sred->pctelescope_matcreate_type = PCTelescopeMatCreate_default; 355 sred->pctelescope_matnullspacecreate_type = PCTelescopeMatNullSpaceCreate_default; 356 sred->pctelescope_reset_type = NULL; 357 break; 358 case TELESCOPE_DMDA: 359 pc->ops->apply = PCApply_Telescope_dmda; 360 sred->pctelescope_setup_type = PCTelescopeSetUp_dmda; 361 sred->pctelescope_matcreate_type = PCTelescopeMatCreate_dmda; 362 sred->pctelescope_matnullspacecreate_type = PCTelescopeMatNullSpaceCreate_dmda; 363 sred->pctelescope_reset_type = PCReset_Telescope_dmda; 364 break; 365 case TELESCOPE_DMPLEX: SETERRQ(comm,PETSC_ERR_SUP,"Supprt for DMPLEX is currently not available"); 366 break; 367 default: SETERRQ(comm,PETSC_ERR_SUP,"Only supprt for repartitioning DMDA is provided"); 368 break; 369 } 370 371 /* setup */ 372 if (sred->pctelescope_setup_type) { 373 ierr = sred->pctelescope_setup_type(pc,sred);CHKERRQ(ierr); 374 } 375 /* update */ 376 if (!pc->setupcalled) { 377 if (sred->pctelescope_matcreate_type) { 378 ierr = sred->pctelescope_matcreate_type(pc,sred,MAT_INITIAL_MATRIX,&sred->Bred);CHKERRQ(ierr); 379 } 380 if (sred->pctelescope_matnullspacecreate_type) { 381 ierr = sred->pctelescope_matnullspacecreate_type(pc,sred,sred->Bred);CHKERRQ(ierr); 382 } 383 } else { 384 if (sred->pctelescope_matcreate_type) { 385 ierr = sred->pctelescope_matcreate_type(pc,sred,MAT_REUSE_MATRIX,&sred->Bred);CHKERRQ(ierr); 386 } 387 } 388 389 /* common - no construction */ 390 if (isActiveRank(sred->psubcomm)) { 391 ierr = KSPSetOperators(sred->ksp,sred->Bred,sred->Bred);CHKERRQ(ierr); 392 if (pc->setfromoptionscalled && !pc->setupcalled){ 393 ierr = KSPSetFromOptions(sred->ksp);CHKERRQ(ierr); 394 } 395 } 396 PetscFunctionReturn(0); 397 } 398 399 #undef __FUNCT__ 400 #define __FUNCT__ "PCApply_Telescope" 401 static PetscErrorCode PCApply_Telescope(PC pc,Vec x,Vec y) 402 { 403 PC_Telescope sred = (PC_Telescope)pc->data; 404 PetscErrorCode ierr; 405 Vec xtmp,xred,yred; 406 PetscInt i,st,ed,bs; 407 VecScatter scatter; 408 PetscScalar *array; 409 const PetscScalar *x_array; 410 411 PetscFunctionBegin; 412 xtmp = sred->xtmp; 413 scatter = sred->scatter; 414 xred = sred->xred; 415 yred = sred->yred; 416 417 if (pc->nonzero_guess) { 418 ierr = PetscInfo(pc,"PCTelescope: Scattering y for non-zero-initial guess\n");CHKERRQ(ierr); 419 /* pull in vector y->xtmp */ 420 ierr = VecScatterBegin(scatter,y,xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 421 ierr = VecScatterEnd(scatter,y,xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 422 423 /* copy vector entires into xred */ 424 ierr = VecGetBlockSize(xtmp,&bs);CHKERRQ(ierr); 425 ierr = VecGetArrayRead(xtmp,&x_array);CHKERRQ(ierr); 426 if (yred) { 427 PetscScalar *LA_yred; 428 ierr = VecGetOwnershipRange(yred,&st,&ed);CHKERRQ(ierr); 429 ierr = VecGetArray(yred,&LA_yred);CHKERRQ(ierr); 430 for (i=0; i<ed-st; i++) { 431 LA_yred[i] = x_array[i]; 432 } 433 ierr = VecRestoreArray(yred,&LA_yred);CHKERRQ(ierr); 434 } 435 ierr = VecRestoreArrayRead(xtmp,&x_array);CHKERRQ(ierr); 436 } 437 438 /* pull in vector x->xtmp */ 439 ierr = VecScatterBegin(scatter,x,xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 440 ierr = VecScatterEnd(scatter,x,xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 441 442 /* copy vector entires into xred */ 443 ierr = VecGetBlockSize(xtmp,&bs);CHKERRQ(ierr); 444 ierr = VecGetArrayRead(xtmp,&x_array);CHKERRQ(ierr); 445 if (xred) { 446 PetscScalar *LA_xred; 447 ierr = VecGetOwnershipRange(xred,&st,&ed);CHKERRQ(ierr); 448 ierr = VecGetArray(xred,&LA_xred);CHKERRQ(ierr); 449 for (i=0; i<ed-st; i++) { 450 LA_xred[i] = x_array[i]; 451 } 452 ierr = VecRestoreArray(xred,&LA_xred);CHKERRQ(ierr); 453 } 454 ierr = VecRestoreArrayRead(xtmp,&x_array);CHKERRQ(ierr); 455 /* solve */ 456 if (isActiveRank(sred->psubcomm)) { 457 ierr = KSPSolve(sred->ksp,xred,yred);CHKERRQ(ierr); 458 } 459 /* return vector */ 460 ierr = VecGetBlockSize(xtmp,&bs);CHKERRQ(ierr); 461 ierr = VecGetArray(xtmp,&array);CHKERRQ(ierr); 462 if (yred) { 463 const PetscScalar *LA_yred; 464 ierr = VecGetOwnershipRange(yred,&st,&ed);CHKERRQ(ierr); 465 ierr = VecGetArrayRead(yred,&LA_yred);CHKERRQ(ierr); 466 for (i=0; i<ed-st; i++) { 467 array[i] = LA_yred[i]; 468 } 469 ierr = VecRestoreArrayRead(yred,&LA_yred);CHKERRQ(ierr); 470 } 471 ierr = VecRestoreArray(xtmp,&array);CHKERRQ(ierr); 472 ierr = VecScatterBegin(scatter,xtmp,y,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 473 ierr = VecScatterEnd(scatter,xtmp,y,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 474 PetscFunctionReturn(0); 475 } 476 477 #undef __FUNCT__ 478 #define __FUNCT__ "PCReset_Telescope" 479 static PetscErrorCode PCReset_Telescope(PC pc) 480 { 481 PC_Telescope sred = (PC_Telescope)pc->data; 482 PetscErrorCode ierr; 483 484 ierr = ISDestroy(&sred->isin);CHKERRQ(ierr); 485 ierr = VecScatterDestroy(&sred->scatter);CHKERRQ(ierr); 486 ierr = VecDestroy(&sred->xred);CHKERRQ(ierr); 487 ierr = VecDestroy(&sred->yred);CHKERRQ(ierr); 488 ierr = VecDestroy(&sred->xtmp);CHKERRQ(ierr); 489 ierr = MatDestroy(&sred->Bred);CHKERRQ(ierr); 490 ierr = KSPReset(sred->ksp);CHKERRQ(ierr); 491 if (sred->pctelescope_reset_type) { 492 ierr = sred->pctelescope_reset_type(pc);CHKERRQ(ierr); 493 } 494 PetscFunctionReturn(0); 495 } 496 497 #undef __FUNCT__ 498 #define __FUNCT__ "PCDestroy_Telescope" 499 static PetscErrorCode PCDestroy_Telescope(PC pc) 500 { 501 PC_Telescope sred = (PC_Telescope)pc->data; 502 PetscErrorCode ierr; 503 504 PetscFunctionBegin; 505 ierr = PCReset_Telescope(pc);CHKERRQ(ierr); 506 ierr = KSPDestroy(&sred->ksp);CHKERRQ(ierr); 507 ierr = PetscSubcommDestroy(&sred->psubcomm);CHKERRQ(ierr); 508 ierr = PetscFree(sred->dm_ctx);CHKERRQ(ierr); 509 ierr = PetscFree(pc->data);CHKERRQ(ierr); 510 PetscFunctionReturn(0); 511 } 512 513 #undef __FUNCT__ 514 #define __FUNCT__ "PCSetFromOptions_Telescope" 515 static PetscErrorCode PCSetFromOptions_Telescope(PetscOptionItems *PetscOptionsObject,PC pc) 516 { 517 PC_Telescope sred = (PC_Telescope)pc->data; 518 PetscErrorCode ierr; 519 MPI_Comm comm; 520 PetscMPIInt size; 521 522 PetscFunctionBegin; 523 ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr); 524 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 525 ierr = PetscOptionsHead(PetscOptionsObject,"Telescope options");CHKERRQ(ierr); 526 ierr = PetscOptionsInt("-pc_telescope_reduction_factor","Factor to reduce comm size by","PCTelescopeSetReductionFactor",sred->redfactor,&sred->redfactor,0);CHKERRQ(ierr); 527 if (sred->redfactor > size) SETERRQ(comm,PETSC_ERR_ARG_WRONG,"-pc_telescope_reduction_factor <= comm size"); 528 ierr = PetscOptionsBool("-pc_telescope_ignore_dm","Ignore any DM attached to the PC","PCTelescopeSetIgnoreDM",sred->ignore_dm,&sred->ignore_dm,0);CHKERRQ(ierr); 529 ierr = PetscOptionsBool("-pc_telescope_ignore_kspcomputeoperators","Ignore method used to compute A","PCTelescopeSetIgnoreKSPComputeOperators",sred->ignore_kspcomputeoperators,&sred->ignore_kspcomputeoperators,0);CHKERRQ(ierr); 530 ierr = PetscOptionsTail();CHKERRQ(ierr); 531 PetscFunctionReturn(0); 532 } 533 534 /* PC simplementation specific API's */ 535 536 static PetscErrorCode PCTelescopeGetKSP_Telescope(PC pc,KSP *ksp) 537 { 538 PC_Telescope red = (PC_Telescope)pc->data; 539 PetscFunctionBegin; 540 if (ksp) *ksp = red->ksp; 541 PetscFunctionReturn(0); 542 } 543 544 static PetscErrorCode PCTelescopeGetReductionFactor_Telescope(PC pc,PetscInt *fact) 545 { 546 PC_Telescope red = (PC_Telescope)pc->data; 547 PetscFunctionBegin; 548 if (fact) *fact = red->redfactor; 549 PetscFunctionReturn(0); 550 } 551 552 static PetscErrorCode PCTelescopeSetReductionFactor_Telescope(PC pc,PetscInt fact) 553 { 554 PC_Telescope red = (PC_Telescope)pc->data; 555 PetscMPIInt size; 556 PetscErrorCode ierr; 557 558 PetscFunctionBegin; 559 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)pc),&size);CHKERRQ(ierr); 560 if (fact <= 0) SETERRQ1(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONG,"Reduction factor of telescoping PC %D must be positive",fact); 561 if (fact > size) SETERRQ1(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONG,"Reduction factor of telescoping PC %D must be <= comm.size",fact); 562 red->redfactor = fact; 563 PetscFunctionReturn(0); 564 } 565 566 static PetscErrorCode PCTelescopeGetIgnoreDM_Telescope(PC pc,PetscBool *v) 567 { 568 PC_Telescope red = (PC_Telescope)pc->data; 569 PetscFunctionBegin; 570 if (v) *v = red->ignore_dm; 571 PetscFunctionReturn(0); 572 } 573 static PetscErrorCode PCTelescopeSetIgnoreDM_Telescope(PC pc,PetscBool v) 574 { 575 PC_Telescope red = (PC_Telescope)pc->data; 576 PetscFunctionBegin; 577 red->ignore_dm = v; 578 PetscFunctionReturn(0); 579 } 580 581 static PetscErrorCode PCTelescopeGetDM_Telescope(PC pc,DM *dm) 582 { 583 PC_Telescope red = (PC_Telescope)pc->data; 584 PetscFunctionBegin; 585 *dm = private_PCTelescopeGetSubDM(red); 586 PetscFunctionReturn(0); 587 } 588 589 /*@ 590 PCTelescopeGetKSP - Gets the KSP created by the telescoping PC. 591 592 Not Collective 593 594 Input Parameter: 595 . pc - the preconditioner context 596 597 Output Parameter: 598 . subksp - the KSP defined the smaller set of processes 599 600 Level: advanced 601 602 .keywords: PC, telescopting solve 603 @*/ 604 PetscErrorCode PCTelescopeGetKSP(PC pc,KSP *subksp) 605 { 606 PetscErrorCode ierr; 607 PetscFunctionBegin; 608 ierr = PetscTryMethod(pc,"PCTelescopeGetKSP_C",(PC,KSP*),(pc,subksp));CHKERRQ(ierr); 609 PetscFunctionReturn(0); 610 } 611 612 /*@ 613 PCTelescopeGetReductionFactor - Gets the factor by which the original number of processes has been reduced by. 614 615 Not Collective 616 617 Input Parameter: 618 . pc - the preconditioner context 619 620 Output Parameter: 621 . fact - the reduction factor 622 623 Level: advanced 624 625 .keywords: PC, telescoping solve 626 @*/ 627 PetscErrorCode PCTelescopeGetReductionFactor(PC pc,PetscInt *fact) 628 { 629 PetscErrorCode ierr; 630 PetscFunctionBegin; 631 ierr = PetscTryMethod(pc,"PCTelescopeGetReductionFactor_C",(PC,PetscInt*),(pc,fact));CHKERRQ(ierr); 632 PetscFunctionReturn(0); 633 } 634 635 /*@ 636 PCTelescopeSetReductionFactor - Sets the factor by which the original number of processes has been reduced by. 637 638 Not Collective 639 640 Input Parameter: 641 . pc - the preconditioner context 642 643 Output Parameter: 644 . fact - the reduction factor 645 646 Level: advanced 647 648 .keywords: PC, telescoping solve 649 @*/ 650 PetscErrorCode PCTelescopeSetReductionFactor(PC pc,PetscInt fact) 651 { 652 PetscErrorCode ierr; 653 PetscFunctionBegin; 654 ierr = PetscTryMethod(pc,"PCTelescopeSetReductionFactor_C",(PC,PetscInt),(pc,fact));CHKERRQ(ierr); 655 PetscFunctionReturn(0); 656 } 657 658 /*@ 659 PCTelescopeGetIgnoreDM - Get the flag indicating if any DM attached to the PC will be used. 660 661 Not Collective 662 663 Input Parameter: 664 . pc - the preconditioner context 665 666 Output Parameter: 667 . v - the flag 668 669 Level: advanced 670 671 .keywords: PC, telescoping solve 672 @*/ 673 PetscErrorCode PCTelescopeGetIgnoreDM(PC pc,PetscBool *v) 674 { 675 PetscErrorCode ierr; 676 PetscFunctionBegin; 677 ierr = PetscTryMethod(pc,"PCTelescopeGetIgnoreDM_C",(PC,PetscBool*),(pc,v));CHKERRQ(ierr); 678 PetscFunctionReturn(0); 679 } 680 681 /*@ 682 PCTelescopeSetIgnoreDM - Set a flag to ignore any DM attached to the PC. 683 684 Not Collective 685 686 Input Parameter: 687 . pc - the preconditioner context 688 689 Output Parameter: 690 . v - Use PETSC_TRUE to ignore any DM 691 692 Level: advanced 693 694 .keywords: PC, telescoping solve 695 @*/ 696 PetscErrorCode PCTelescopeSetIgnoreDM(PC pc,PetscBool v) 697 { 698 PetscErrorCode ierr; 699 PetscFunctionBegin; 700 ierr = PetscTryMethod(pc,"PCTelescopeSetIgnoreDM_C",(PC,PetscBool),(pc,v));CHKERRQ(ierr); 701 PetscFunctionReturn(0); 702 } 703 704 /*@ 705 PCTelescopeGetDM - Get the re-partitioned DM attached to the sub KSP. 706 707 Not Collective 708 709 Input Parameter: 710 . pc - the preconditioner context 711 712 Output Parameter: 713 . subdm - The re-partitioned DM 714 715 Level: advanced 716 717 .keywords: PC, telescoping solve 718 @*/ 719 PetscErrorCode PCTelescopeGetDM(PC pc,DM *subdm) 720 { 721 PetscErrorCode ierr; 722 PetscFunctionBegin; 723 ierr = PetscTryMethod(pc,"PCTelescopeGetDM_C",(PC,DM*),(pc,subdm));CHKERRQ(ierr); 724 PetscFunctionReturn(0); 725 } 726 727 /* -------------------------------------------------------------------------------------*/ 728 /*MC 729 PCTELESCOPE - Runs a KSP solver on a sub-group of processors. MPI processes not in the sub-communicator are idle during the solve. 730 731 Options Database: 732 + -pc_telescope_reduction_factor <n> - factor to use communicator size by, for example if you are using 64 MPI processes and 733 use an n of 4, the new sub-communicator will be 4 defined with 64/4 processes 734 - -pc_telescope_ignore_dm <false> - flag to indicate whether an attached DM should be ignored 735 736 Level: advanced 737 738 Notes: 739 The preconditioner is deemed telescopic as it only calls KSPSolve() on a single 740 sub-communicator in contrast with PCREDUNDANT which calls KSPSolve() on N sub-communicators. 741 This means there will be MPI processes within c, which will be idle during the application of this preconditioner. 742 743 The default KSP is PREONLY. If a DM is attached to the PC, it is re-partitioned on the sub-communicator. 744 Both the B mat operator and the right hand side vector are permuted into the new DOF ordering defined by the re-partitioned DM. 745 Currently only support for re-partitioning a DMDA is provided. 746 Any nullspace attached to the original Bmat operator are extracted, re-partitioned and set on the repartitioned Bmat operator. 747 KSPSetComputeOperators() is not propagated to the sub KSP. 748 Currently there is no support for the flag -pc_use_amat 749 750 Assuming that the parent preconditioner (PC) is defined on a communicator c, this implementation 751 creates a child sub-communicator (c') containing less MPI processes than the original parent preconditioner (PC). 752 753 Developer Notes: 754 During PCSetup, the B operator is scattered onto c'. 755 Within PCApply, the RHS vector (x) is scattered into a redundant vector, xred (defined on c'). 756 Then KSPSolve() is executed on the c' communicator. 757 758 The communicator used within the telescoping preconditioner is defined by a PetscSubcomm using the INTERLACED 759 creation routine. We run the sub KSP on only the ranks within the communicator which have a color equal to zero. 760 761 The telescoping preconditioner is aware of nullspaces which are attached to the only B operator. 762 In case where B has a n nullspace attached, these nullspaces vectors are extract from B and mapped into 763 a new nullspace (defined on the sub-communicator) which is attached to B' (the B operator which was scattered to c') 764 765 The telescoping preconditioner is aware of an attached DM. In the event that the DM is of type DMDA (2D or 3D - 766 1D support for 1D DMDAs is not provided), a new DMDA is created on c' (e.g. it is re-partitioned), and this new DM 767 is attached the sub KSPSolve(). The design of telescope is such that it should be possible to extend support 768 for re-partitioning other DM's (e.g. DMPLEX). The user can supply a flag to ignore attached DMs. 769 770 By default, B' is defined by simply fusing rows from different MPI processes 771 772 When a DMDA is attached to the parent preconditioner, B' is defined by: (i) performing a symmetric permuting of B 773 into the ordering defined by the DMDA on c', (ii) extracting the local chunks via MatGetSubMatrices(), (iii) fusing the 774 locally (sequential) matrices defined on the ranks common to c and c' into B' using MatCreateMPIMatConcatenateSeqMat() 775 776 Limitations/improvements 777 VecPlaceArray could be used within PCApply() to improve efficiency and reduce memory usage. 778 779 The symmetric permutation used when a DMDA is encountered is performed via explicitly assmbleming a permutation matrix P, 780 and performing P^T.A.P. Possibly it might be more efficient to use MatPermute(). I opted to use P^T.A.P as it appears 781 VecPermute() does not supported for the use case required here. By computing P, I can permute both the operator and RHS in a 782 consistent manner. 783 784 Mapping of vectors is performed this way 785 Suppose the parent comm size was 4, and we set a reduction factor of 2, thus would give a comm size on c' of 2. 786 Using the interlaced creation routine, the ranks in c with color = 0, will be rank 0 and 2. 787 We perform the scatter to the sub-comm in the following way, 788 [1] Given a vector x defined on comm c 789 790 rank(c) : _________ 0 ______ ________ 1 _______ ________ 2 _____________ ___________ 3 __________ 791 x : [0, 1, 2, 3, 4, 5] [6, 7, 8, 9, 10, 11] [12, 13, 14, 15, 16, 17] [18, 19, 20, 21, 22, 23] 792 793 scatter to xtmp defined also on comm c so that we have the following values 794 795 rank(c) : ___________________ 0 ________________ _1_ ______________________ 2 _______________________ __3_ 796 xtmp : [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11] [ ] [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23] [ ] 797 798 The entries on rank 1 and 3 (ranks which do not have a color = 0 in c') have no values 799 800 801 [2] Copy the value from rank 0, 2 (indices with respect to comm c) into the vector xred which is defined on communicator c'. 802 Ranks 0 and 2 are the only ranks in the subcomm which have a color = 0. 803 804 rank(c') : ___________________ 0 _______________ ______________________ 1 _____________________ 805 xred : [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11] [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23] 806 807 808 Contributed by Dave May 809 810 .seealso: PCTelescopeGetKSP(), PCTelescopeGetDM(), PCTelescopeGetReductionFactor(), PCTelescopeSetReductionFactor(), PCTelescopeGetIgnoreDM(), PCTelescopeSetIgnoreDM(), PCREDUNDANT 811 M*/ 812 #undef __FUNCT__ 813 #define __FUNCT__ "PCCreate_Telescope" 814 PETSC_EXTERN PetscErrorCode PCCreate_Telescope(PC pc) 815 { 816 PetscErrorCode ierr; 817 struct _PC_Telescope *sred; 818 819 PetscFunctionBegin; 820 ierr = PetscNewLog(pc,&sred);CHKERRQ(ierr); 821 sred->redfactor = 1; 822 sred->ignore_dm = PETSC_FALSE; 823 sred->ignore_kspcomputeoperators = PETSC_FALSE; 824 pc->data = (void*)sred; 825 826 pc->ops->apply = PCApply_Telescope; 827 pc->ops->applytranspose = NULL; 828 pc->ops->setup = PCSetUp_Telescope; 829 pc->ops->destroy = PCDestroy_Telescope; 830 pc->ops->reset = PCReset_Telescope; 831 pc->ops->setfromoptions = PCSetFromOptions_Telescope; 832 pc->ops->view = PCView_Telescope; 833 834 sred->pctelescope_setup_type = PCTelescopeSetUp_default; 835 sred->pctelescope_matcreate_type = PCTelescopeMatCreate_default; 836 sred->pctelescope_matnullspacecreate_type = PCTelescopeMatNullSpaceCreate_default; 837 sred->pctelescope_reset_type = NULL; 838 839 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeGetKSP_C",PCTelescopeGetKSP_Telescope);CHKERRQ(ierr); 840 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeGetReductionFactor_C",PCTelescopeGetReductionFactor_Telescope);CHKERRQ(ierr); 841 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeSetReductionFactor_C",PCTelescopeSetReductionFactor_Telescope);CHKERRQ(ierr); 842 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeGetIgnoreDM_C",PCTelescopeGetIgnoreDM_Telescope);CHKERRQ(ierr); 843 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeSetIgnoreDM_C",PCTelescopeSetIgnoreDM_Telescope);CHKERRQ(ierr); 844 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeGetDM_C",PCTelescopeGetDM_Telescope);CHKERRQ(ierr); 845 PetscFunctionReturn(0); 846 } 847