1 2 3 4 #include <petsc/private/matimpl.h> 5 #include <petsc/private/pcimpl.h> 6 #include <petscksp.h> /*I "petscksp.h" I*/ 7 #include <petscdm.h> /*I "petscdm.h" I*/ 8 9 #include "telescope.h" 10 11 /* 12 PCTelescopeSetUp_default() 13 PCTelescopeMatCreate_default() 14 15 default 16 17 // scatter in 18 x(comm) -> xtmp(comm) 19 20 xred(subcomm) <- xtmp 21 yred(subcomm) 22 23 yred(subcomm) --> xtmp 24 25 // scatter out 26 xtmp(comm) -> y(comm) 27 */ 28 29 PetscBool isActiveRank(PetscSubcomm scomm) 30 { 31 if (scomm->color == 0) { return PETSC_TRUE; } 32 else { return PETSC_FALSE; } 33 } 34 35 #undef __FUNCT__ 36 #define __FUNCT__ "private_PCTelescopeGetSubDM" 37 DM private_PCTelescopeGetSubDM(PC_Telescope sred) 38 { 39 DM subdm = NULL; 40 41 if (!isActiveRank(sred->psubcomm)) { subdm = NULL; } 42 else { 43 switch (sred->sr_type) { 44 case TELESCOPE_DEFAULT: subdm = NULL; 45 break; 46 case TELESCOPE_DMDA: subdm = ((PC_Telescope_DMDACtx*)sred->dm_ctx)->dmrepart; 47 break; 48 case TELESCOPE_DMPLEX: subdm = NULL; 49 break; 50 } 51 } 52 return(subdm); 53 } 54 55 #undef __FUNCT__ 56 #define __FUNCT__ "PCTelescopeSetUp_default" 57 PetscErrorCode PCTelescopeSetUp_default(PC pc,PC_Telescope sred) 58 { 59 PetscErrorCode ierr; 60 PetscInt m,M,bs,st,ed; 61 Vec x,xred,yred,xtmp; 62 Mat B; 63 MPI_Comm comm,subcomm; 64 VecScatter scatter; 65 IS isin; 66 67 PetscFunctionBegin; 68 ierr = PetscInfo(pc,"PCTelescope: setup (default)\n");CHKERRQ(ierr); 69 comm = PetscSubcommParent(sred->psubcomm); 70 subcomm = PetscSubcommChild(sred->psubcomm); 71 72 ierr = PCGetOperators(pc,NULL,&B);CHKERRQ(ierr); 73 ierr = MatGetSize(B,&M,NULL);CHKERRQ(ierr); 74 ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr); 75 ierr = MatCreateVecs(B,&x,NULL);CHKERRQ(ierr); 76 77 xred = NULL; 78 m = 0; 79 if (isActiveRank(sred->psubcomm)) { 80 ierr = VecCreate(subcomm,&xred);CHKERRQ(ierr); 81 ierr = VecSetSizes(xred,PETSC_DECIDE,M);CHKERRQ(ierr); 82 ierr = VecSetBlockSize(xred,bs);CHKERRQ(ierr); 83 ierr = VecSetFromOptions(xred);CHKERRQ(ierr); 84 ierr = VecGetLocalSize(xred,&m); 85 } 86 87 yred = NULL; 88 if (isActiveRank(sred->psubcomm)) { 89 ierr = VecDuplicate(xred,&yred);CHKERRQ(ierr); 90 } 91 92 ierr = VecCreate(comm,&xtmp);CHKERRQ(ierr); 93 ierr = VecSetSizes(xtmp,m,PETSC_DECIDE);CHKERRQ(ierr); 94 ierr = VecSetBlockSize(xtmp,bs);CHKERRQ(ierr); 95 ierr = VecSetType(xtmp,((PetscObject)x)->type_name);CHKERRQ(ierr); 96 97 if (isActiveRank(sred->psubcomm)) { 98 ierr = VecGetOwnershipRange(xred,&st,&ed);CHKERRQ(ierr); 99 ierr = ISCreateStride(comm,(ed-st),st,1,&isin);CHKERRQ(ierr); 100 } else { 101 ierr = VecGetOwnershipRange(x,&st,&ed);CHKERRQ(ierr); 102 ierr = ISCreateStride(comm,0,st,1,&isin);CHKERRQ(ierr); 103 } 104 ierr = ISSetBlockSize(isin,bs);CHKERRQ(ierr); 105 106 ierr = VecScatterCreate(x,isin,xtmp,NULL,&scatter);CHKERRQ(ierr); 107 108 sred->isin = isin; 109 sred->scatter = scatter; 110 sred->xred = xred; 111 sred->yred = yred; 112 sred->xtmp = xtmp; 113 ierr = VecDestroy(&x);CHKERRQ(ierr); 114 PetscFunctionReturn(0); 115 } 116 117 #undef __FUNCT__ 118 #define __FUNCT__ "PCTelescopeMatCreate_default" 119 PetscErrorCode PCTelescopeMatCreate_default(PC pc,PC_Telescope sred,MatReuse reuse,Mat *A) 120 { 121 PetscErrorCode ierr; 122 MPI_Comm comm,subcomm; 123 Mat Bred,B; 124 PetscInt nr,nc; 125 IS isrow,iscol; 126 Mat Blocal,*_Blocal; 127 128 PetscFunctionBegin; 129 ierr = PetscInfo(pc,"PCTelescope: updating the redundant preconditioned operator (default)\n");CHKERRQ(ierr); 130 ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr); 131 subcomm = PetscSubcommChild(sred->psubcomm); 132 ierr = PCGetOperators(pc,NULL,&B);CHKERRQ(ierr); 133 ierr = MatGetSize(B,&nr,&nc);CHKERRQ(ierr); 134 isrow = sred->isin; 135 ierr = ISCreateStride(comm,nc,0,1,&iscol);CHKERRQ(ierr); 136 ierr = MatGetSubMatrices(B,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&_Blocal);CHKERRQ(ierr); 137 Blocal = *_Blocal; 138 ierr = PetscFree(_Blocal);CHKERRQ(ierr); 139 Bred = NULL; 140 if (isActiveRank(sred->psubcomm)) { 141 PetscInt mm; 142 143 if (reuse != MAT_INITIAL_MATRIX) { Bred = *A; } 144 145 ierr = MatGetSize(Blocal,&mm,NULL);CHKERRQ(ierr); 146 ierr = MatCreateMPIMatConcatenateSeqMat(subcomm,Blocal,mm,reuse,&Bred);CHKERRQ(ierr); 147 } 148 *A = Bred; 149 ierr = ISDestroy(&iscol);CHKERRQ(ierr); 150 ierr = MatDestroy(&Blocal);CHKERRQ(ierr); 151 PetscFunctionReturn(0); 152 } 153 154 #undef __FUNCT__ 155 #define __FUNCT__ "PCTelescopeMatNullSpaceCreate_default" 156 PetscErrorCode PCTelescopeMatNullSpaceCreate_default(PC pc,PC_Telescope sred,Mat sub_mat) 157 { 158 PetscErrorCode ierr; 159 MatNullSpace nullspace,sub_nullspace; 160 Mat A,B; 161 PetscBool has_const; 162 PetscInt i,k,n; 163 const Vec *vecs; 164 Vec *sub_vecs; 165 MPI_Comm subcomm; 166 167 PetscFunctionBegin; 168 ierr = PCGetOperators(pc,&A,&B);CHKERRQ(ierr); 169 ierr = MatGetNullSpace(B,&nullspace);CHKERRQ(ierr); 170 if (!nullspace) return(0); 171 172 ierr = PetscInfo(pc,"PCTelescope: generating nullspace (default)\n");CHKERRQ(ierr); 173 subcomm = PetscSubcommChild(sred->psubcomm); 174 ierr = MatNullSpaceGetVecs(nullspace,&has_const,&n,&vecs);CHKERRQ(ierr); 175 176 if (isActiveRank(sred->psubcomm)) { 177 if (n) { 178 ierr = VecDuplicateVecs(sred->xred,n,&sub_vecs);CHKERRQ(ierr); 179 } 180 } 181 182 /* copy entries */ 183 for (k=0; k<n; k++) { 184 const PetscScalar *x_array; 185 PetscScalar *LA_sub_vec; 186 PetscInt st,ed,bs; 187 188 /* pull in vector x->xtmp */ 189 ierr = VecScatterBegin(sred->scatter,vecs[k],sred->xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 190 ierr = VecScatterEnd(sred->scatter,vecs[k],sred->xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 191 /* copy vector entires into xred */ 192 ierr = VecGetBlockSize(sred->xtmp,&bs);CHKERRQ(ierr); 193 ierr = VecGetArrayRead(sred->xtmp,&x_array);CHKERRQ(ierr); 194 if (sub_vecs[k]) { 195 ierr = VecGetOwnershipRange(sub_vecs[k],&st,&ed);CHKERRQ(ierr); 196 ierr = VecGetArray(sub_vecs[k],&LA_sub_vec);CHKERRQ(ierr); 197 for (i=0; i<ed-st; i++) { 198 LA_sub_vec[i] = x_array[i]; 199 } 200 ierr = VecRestoreArray(sub_vecs[k],&LA_sub_vec);CHKERRQ(ierr); 201 } 202 ierr = VecRestoreArrayRead(sred->xtmp,&x_array);CHKERRQ(ierr); 203 } 204 205 if (isActiveRank(sred->psubcomm)) { 206 /* create new nullspace for redundant object */ 207 ierr = MatNullSpaceCreate(subcomm,has_const,n,sub_vecs,&sub_nullspace);CHKERRQ(ierr); 208 sub_nullspace->remove = nullspace->remove; 209 sub_nullspace->rmctx = nullspace->rmctx; 210 211 /* attach redundant nullspace to Bred */ 212 ierr = MatSetNullSpace(sub_mat,sub_nullspace);CHKERRQ(ierr); 213 ierr = VecDestroyVecs(n,&sub_vecs);CHKERRQ(ierr); 214 } 215 PetscFunctionReturn(0); 216 } 217 218 #undef __FUNCT__ 219 #define __FUNCT__ "PCView_Telescope" 220 static PetscErrorCode PCView_Telescope(PC pc,PetscViewer viewer) 221 { 222 PC_Telescope sred = (PC_Telescope)pc->data; 223 PetscErrorCode ierr; 224 PetscBool iascii,isstring; 225 PetscViewer subviewer; 226 227 PetscFunctionBegin; 228 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 229 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSTRING,&isstring);CHKERRQ(ierr); 230 if (iascii) { 231 if (!sred->psubcomm) { 232 ierr = PetscViewerASCIIPrintf(viewer," Telescope: preconditioner not yet setup\n");CHKERRQ(ierr); 233 } else { 234 MPI_Comm comm,subcomm; 235 PetscMPIInt comm_size,subcomm_size; 236 DM dm,subdm; 237 238 ierr = PCGetDM(pc,&dm);CHKERRQ(ierr); 239 subdm = private_PCTelescopeGetSubDM(sred); 240 comm = PetscSubcommParent(sred->psubcomm); 241 subcomm = PetscSubcommChild(sred->psubcomm); 242 ierr = MPI_Comm_size(comm,&comm_size);CHKERRQ(ierr); 243 ierr = MPI_Comm_size(subcomm,&subcomm_size);CHKERRQ(ierr); 244 245 ierr = PetscViewerASCIIPrintf(viewer," Telescope: parent comm size reduction factor = %D\n",sred->redfactor);CHKERRQ(ierr); 246 ierr = PetscViewerASCIIPrintf(viewer," Telescope: comm_size = %d , subcomm_size = %d\n",(int)comm_size,(int)subcomm_size);CHKERRQ(ierr); 247 ierr = PetscViewerGetSubViewer(viewer,subcomm,&subviewer);CHKERRQ(ierr); 248 if (isActiveRank(sred->psubcomm)) { 249 ierr = PetscViewerASCIIPushTab(subviewer);CHKERRQ(ierr); 250 251 if (dm && sred->ignore_dm) { 252 ierr = PetscViewerASCIIPrintf(subviewer," Telescope: ignoring DM\n");CHKERRQ(ierr); 253 } 254 if (sred->ignore_kspcomputeoperators) { 255 ierr = PetscViewerASCIIPrintf(subviewer," Telescope: ignoring KSPComputeOperators\n");CHKERRQ(ierr); 256 } 257 switch (sred->sr_type) { 258 case TELESCOPE_DEFAULT: 259 ierr = PetscViewerASCIIPrintf(subviewer," Telescope: using default setup\n");CHKERRQ(ierr); 260 break; 261 case TELESCOPE_DMDA: 262 ierr = PetscViewerASCIIPrintf(subviewer," Telescope: DMDA detected\n");CHKERRQ(ierr); 263 ierr = DMView_DMDAShort(subdm,subviewer);CHKERRQ(ierr); 264 break; 265 case TELESCOPE_DMPLEX: 266 ierr = PetscViewerASCIIPrintf(subviewer," Telescope: DMPLEX detected\n");CHKERRQ(ierr); 267 break; 268 } 269 270 ierr = KSPView(sred->ksp,subviewer);CHKERRQ(ierr); 271 ierr = PetscViewerASCIIPopTab(subviewer);CHKERRQ(ierr); 272 } 273 ierr = PetscViewerRestoreSubViewer(viewer,subcomm,&subviewer);CHKERRQ(ierr); 274 } 275 } 276 PetscFunctionReturn(0); 277 } 278 279 #undef __FUNCT__ 280 #define __FUNCT__ "PCSetUp_Telescope" 281 static PetscErrorCode PCSetUp_Telescope(PC pc) 282 { 283 PC_Telescope sred = (PC_Telescope)pc->data; 284 PetscErrorCode ierr; 285 MPI_Comm comm,subcomm=0; 286 PCTelescopeType sr_type; 287 288 PetscFunctionBegin; 289 ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr); 290 291 /* subcomm definition */ 292 if (!pc->setupcalled) { 293 if (!sred->psubcomm) { 294 ierr = PetscSubcommCreate(comm,&sred->psubcomm);CHKERRQ(ierr); 295 ierr = PetscSubcommSetNumber(sred->psubcomm,sred->redfactor);CHKERRQ(ierr); 296 ierr = PetscSubcommSetType(sred->psubcomm,PETSC_SUBCOMM_INTERLACED);CHKERRQ(ierr); 297 /* disable runtime switch of psubcomm type, e.g., '-psubcomm_type interlaced */ 298 /* ierr = PetscSubcommSetFromOptions(sred->psubcomm);CHKERRQ(ierr); */ 299 ierr = PetscLogObjectMemory((PetscObject)pc,sizeof(PetscSubcomm));CHKERRQ(ierr); 300 /* create a new PC that processors in each subcomm have copy of */ 301 } 302 } 303 subcomm = PetscSubcommChild(sred->psubcomm); 304 305 /* internal KSP */ 306 if (!pc->setupcalled) { 307 const char *prefix; 308 309 if (isActiveRank(sred->psubcomm)) { 310 ierr = KSPCreate(subcomm,&sred->ksp);CHKERRQ(ierr); 311 ierr = KSPSetErrorIfNotConverged(sred->ksp,pc->erroriffailure);CHKERRQ(ierr); 312 ierr = PetscObjectIncrementTabLevel((PetscObject)sred->ksp,(PetscObject)pc,1);CHKERRQ(ierr); 313 ierr = PetscLogObjectParent((PetscObject)pc,(PetscObject)sred->ksp);CHKERRQ(ierr); 314 ierr = KSPSetType(sred->ksp,KSPPREONLY);CHKERRQ(ierr); 315 ierr = KSPSetInitialGuessNonzero(sred->ksp,pc->nonzero_guess);CHKERRQ(ierr); 316 ierr = PCGetOptionsPrefix(pc,&prefix);CHKERRQ(ierr); 317 ierr = KSPSetOptionsPrefix(sred->ksp,prefix);CHKERRQ(ierr); 318 ierr = KSPAppendOptionsPrefix(sred->ksp,"telescope_");CHKERRQ(ierr); 319 } 320 } 321 /* Determine type of setup/update */ 322 if (!pc->setupcalled) { 323 PetscBool has_dm,same; 324 DM dm; 325 326 sr_type = TELESCOPE_DEFAULT; 327 has_dm = PETSC_FALSE; 328 ierr = PCGetDM(pc,&dm);CHKERRQ(ierr); 329 if (dm) { has_dm = PETSC_TRUE; } 330 if (has_dm) { 331 /* check for dmda */ 332 ierr = PetscObjectTypeCompare((PetscObject)dm,DMDA,&same);CHKERRQ(ierr); 333 if (same) { 334 ierr = PetscInfo(pc,"PCTelescope: found DMDA\n");CHKERRQ(ierr); 335 sr_type = TELESCOPE_DMDA; 336 } 337 /* check for dmplex */ 338 ierr = PetscObjectTypeCompare((PetscObject)dm,DMPLEX,&same);CHKERRQ(ierr); 339 if (same) { 340 PetscInfo(pc,"PCTelescope: found DMPLEX\n"); 341 sr_type = TELESCOPE_DMPLEX; 342 } 343 } 344 345 if (sred->ignore_dm) { 346 PetscInfo(pc,"PCTelescope: ignore DM\n"); 347 sr_type = TELESCOPE_DEFAULT; 348 } 349 sred->sr_type = sr_type; 350 } else { 351 sr_type = sred->sr_type; 352 } 353 354 /* set function pointers for repartition setup, matrix creation/update, matrix nullspace and reset functionality */ 355 switch (sr_type) { 356 case TELESCOPE_DEFAULT: 357 sred->pctelescope_setup_type = PCTelescopeSetUp_default; 358 sred->pctelescope_matcreate_type = PCTelescopeMatCreate_default; 359 sred->pctelescope_matnullspacecreate_type = PCTelescopeMatNullSpaceCreate_default; 360 sred->pctelescope_reset_type = NULL; 361 break; 362 case TELESCOPE_DMDA: 363 pc->ops->apply = PCApply_Telescope_dmda; 364 sred->pctelescope_setup_type = PCTelescopeSetUp_dmda; 365 sred->pctelescope_matcreate_type = PCTelescopeMatCreate_dmda; 366 sred->pctelescope_matnullspacecreate_type = PCTelescopeMatNullSpaceCreate_dmda; 367 sred->pctelescope_reset_type = PCReset_Telescope_dmda; 368 break; 369 case TELESCOPE_DMPLEX: SETERRQ(comm,PETSC_ERR_SUP,"Supprt for DMPLEX is currently not available"); 370 break; 371 default: SETERRQ(comm,PETSC_ERR_SUP,"Only supprt for repartitioning DMDA is provided"); 372 break; 373 } 374 375 /* setup */ 376 if (sred->pctelescope_setup_type) { 377 ierr = sred->pctelescope_setup_type(pc,sred);CHKERRQ(ierr); 378 } 379 /* update */ 380 if (!pc->setupcalled) { 381 if (sred->pctelescope_matcreate_type) { 382 ierr = sred->pctelescope_matcreate_type(pc,sred,MAT_INITIAL_MATRIX,&sred->Bred);CHKERRQ(ierr); 383 } 384 if (sred->pctelescope_matnullspacecreate_type) { 385 ierr = sred->pctelescope_matnullspacecreate_type(pc,sred,sred->Bred);CHKERRQ(ierr); 386 } 387 } else { 388 if (sred->pctelescope_matcreate_type) { 389 ierr = sred->pctelescope_matcreate_type(pc,sred,MAT_REUSE_MATRIX,&sred->Bred);CHKERRQ(ierr); 390 } 391 } 392 393 /* common - no construction */ 394 if (isActiveRank(sred->psubcomm)) { 395 ierr = KSPSetOperators(sred->ksp,sred->Bred,sred->Bred);CHKERRQ(ierr); 396 if (pc->setfromoptionscalled && !pc->setupcalled){ 397 ierr = KSPSetFromOptions(sred->ksp);CHKERRQ(ierr); 398 } 399 } 400 PetscFunctionReturn(0); 401 } 402 403 #undef __FUNCT__ 404 #define __FUNCT__ "PCApply_Telescope" 405 static PetscErrorCode PCApply_Telescope(PC pc,Vec x,Vec y) 406 { 407 PC_Telescope sred = (PC_Telescope)pc->data; 408 PetscErrorCode ierr; 409 Vec xtmp,xred,yred; 410 PetscInt i,st,ed,bs; 411 VecScatter scatter; 412 PetscScalar *array; 413 const PetscScalar *x_array; 414 415 PetscFunctionBegin; 416 xtmp = sred->xtmp; 417 scatter = sred->scatter; 418 xred = sred->xred; 419 yred = sred->yred; 420 421 if (pc->nonzero_guess) { 422 ierr = PetscInfo(pc,"PCTelescope: Scattering y for non-zero-initial guess\n");CHKERRQ(ierr); 423 /* pull in vector y->xtmp */ 424 ierr = VecScatterBegin(scatter,y,xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 425 ierr = VecScatterEnd(scatter,y,xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 426 427 /* copy vector entires into xred */ 428 ierr = VecGetBlockSize(xtmp,&bs);CHKERRQ(ierr); 429 ierr = VecGetArrayRead(xtmp,&x_array);CHKERRQ(ierr); 430 if (yred) { 431 PetscScalar *LA_yred; 432 ierr = VecGetOwnershipRange(yred,&st,&ed);CHKERRQ(ierr); 433 ierr = VecGetArray(yred,&LA_yred);CHKERRQ(ierr); 434 for (i=0; i<ed-st; i++) { 435 LA_yred[i] = x_array[i]; 436 } 437 ierr = VecRestoreArray(yred,&LA_yred);CHKERRQ(ierr); 438 } 439 ierr = VecRestoreArrayRead(xtmp,&x_array);CHKERRQ(ierr); 440 } 441 442 /* pull in vector x->xtmp */ 443 ierr = VecScatterBegin(scatter,x,xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 444 ierr = VecScatterEnd(scatter,x,xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 445 446 /* copy vector entires into xred */ 447 ierr = VecGetBlockSize(xtmp,&bs);CHKERRQ(ierr); 448 ierr = VecGetArrayRead(xtmp,&x_array);CHKERRQ(ierr); 449 if (xred) { 450 PetscScalar *LA_xred; 451 ierr = VecGetOwnershipRange(xred,&st,&ed);CHKERRQ(ierr); 452 ierr = VecGetArray(xred,&LA_xred);CHKERRQ(ierr); 453 for (i=0; i<ed-st; i++) { 454 LA_xred[i] = x_array[i]; 455 } 456 ierr = VecRestoreArray(xred,&LA_xred);CHKERRQ(ierr); 457 } 458 ierr = VecRestoreArrayRead(xtmp,&x_array);CHKERRQ(ierr); 459 /* solve */ 460 if (isActiveRank(sred->psubcomm)) { 461 ierr = KSPSolve(sred->ksp,xred,yred);CHKERRQ(ierr); 462 } 463 /* return vector */ 464 ierr = VecGetBlockSize(xtmp,&bs);CHKERRQ(ierr); 465 ierr = VecGetArray(xtmp,&array);CHKERRQ(ierr); 466 if (yred) { 467 const PetscScalar *LA_yred; 468 ierr = VecGetOwnershipRange(yred,&st,&ed);CHKERRQ(ierr); 469 ierr = VecGetArrayRead(yred,&LA_yred);CHKERRQ(ierr); 470 for (i=0; i<ed-st; i++) { 471 array[i] = LA_yred[i]; 472 } 473 ierr = VecRestoreArrayRead(yred,&LA_yred);CHKERRQ(ierr); 474 } 475 ierr = VecRestoreArray(xtmp,&array);CHKERRQ(ierr); 476 ierr = VecScatterBegin(scatter,xtmp,y,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 477 ierr = VecScatterEnd(scatter,xtmp,y,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 478 PetscFunctionReturn(0); 479 } 480 481 #undef __FUNCT__ 482 #define __FUNCT__ "PCReset_Telescope" 483 static PetscErrorCode PCReset_Telescope(PC pc) 484 { 485 PC_Telescope sred = (PC_Telescope)pc->data; 486 PetscErrorCode ierr; 487 488 ierr = ISDestroy(&sred->isin);CHKERRQ(ierr); 489 ierr = VecScatterDestroy(&sred->scatter);CHKERRQ(ierr); 490 ierr = VecDestroy(&sred->xred);CHKERRQ(ierr); 491 ierr = VecDestroy(&sred->yred);CHKERRQ(ierr); 492 ierr = VecDestroy(&sred->xtmp);CHKERRQ(ierr); 493 ierr = MatDestroy(&sred->Bred);CHKERRQ(ierr); 494 ierr = KSPReset(sred->ksp);CHKERRQ(ierr); 495 if (sred->pctelescope_reset_type) { 496 ierr = sred->pctelescope_reset_type(pc);CHKERRQ(ierr); 497 } 498 PetscFunctionReturn(0); 499 } 500 501 #undef __FUNCT__ 502 #define __FUNCT__ "PCDestroy_Telescope" 503 static PetscErrorCode PCDestroy_Telescope(PC pc) 504 { 505 PC_Telescope sred = (PC_Telescope)pc->data; 506 PetscErrorCode ierr; 507 508 PetscFunctionBegin; 509 ierr = PCReset_Telescope(pc);CHKERRQ(ierr); 510 ierr = KSPDestroy(&sred->ksp);CHKERRQ(ierr); 511 ierr = PetscSubcommDestroy(&sred->psubcomm);CHKERRQ(ierr); 512 ierr = PetscFree(sred->dm_ctx);CHKERRQ(ierr); 513 ierr = PetscFree(pc->data);CHKERRQ(ierr); 514 PetscFunctionReturn(0); 515 } 516 517 #undef __FUNCT__ 518 #define __FUNCT__ "PCSetFromOptions_Telescope" 519 static PetscErrorCode PCSetFromOptions_Telescope(PetscOptionItems *PetscOptionsObject,PC pc) 520 { 521 PC_Telescope sred = (PC_Telescope)pc->data; 522 PetscErrorCode ierr; 523 MPI_Comm comm; 524 PetscMPIInt size; 525 526 PetscFunctionBegin; 527 ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr); 528 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 529 ierr = PetscOptionsHead(PetscOptionsObject,"Telescope options");CHKERRQ(ierr); 530 ierr = PetscOptionsInt("-pc_telescope_reduction_factor","Factor to reduce comm size by","PCTelescopeSetReductionFactor",sred->redfactor,&sred->redfactor,0);CHKERRQ(ierr); 531 if (sred->redfactor > size) SETERRQ(comm,PETSC_ERR_ARG_WRONG,"-pc_telescope_reduction_factor <= comm size"); 532 ierr = PetscOptionsBool("-pc_telescope_ignore_dm","Ignore any DM attached to the PC","PCTelescopeSetIgnoreDM",sred->ignore_dm,&sred->ignore_dm,0);CHKERRQ(ierr); 533 ierr = PetscOptionsBool("-pc_telescope_ignore_kspcomputeoperators","Ignore method used to compute A","PCTelescopeSetIgnoreKSPComputeOperators",sred->ignore_kspcomputeoperators,&sred->ignore_kspcomputeoperators,0);CHKERRQ(ierr); 534 ierr = PetscOptionsTail();CHKERRQ(ierr); 535 PetscFunctionReturn(0); 536 } 537 538 /* PC simplementation specific API's */ 539 540 static PetscErrorCode PCTelescopeGetKSP_Telescope(PC pc,KSP *ksp) 541 { 542 PC_Telescope red = (PC_Telescope)pc->data; 543 PetscFunctionBegin; 544 if (ksp) *ksp = red->ksp; 545 PetscFunctionReturn(0); 546 } 547 548 static PetscErrorCode PCTelescopeGetReductionFactor_Telescope(PC pc,PetscInt *fact) 549 { 550 PC_Telescope red = (PC_Telescope)pc->data; 551 PetscFunctionBegin; 552 if (fact) *fact = red->redfactor; 553 PetscFunctionReturn(0); 554 } 555 556 static PetscErrorCode PCTelescopeSetReductionFactor_Telescope(PC pc,PetscInt fact) 557 { 558 PC_Telescope red = (PC_Telescope)pc->data; 559 PetscMPIInt size; 560 PetscErrorCode ierr; 561 562 PetscFunctionBegin; 563 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)pc),&size);CHKERRQ(ierr); 564 if (fact <= 0) SETERRQ1(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONG,"Reduction factor of telescoping PC %D must be positive",fact); 565 if (fact > size) SETERRQ1(PetscObjectComm((PetscObject)pc),PETSC_ERR_ARG_WRONG,"Reduction factor of telescoping PC %D must be <= comm.size",fact); 566 red->redfactor = fact; 567 PetscFunctionReturn(0); 568 } 569 570 static PetscErrorCode PCTelescopeGetIgnoreDM_Telescope(PC pc,PetscBool *v) 571 { 572 PC_Telescope red = (PC_Telescope)pc->data; 573 PetscFunctionBegin; 574 if (v) *v = red->ignore_dm; 575 PetscFunctionReturn(0); 576 } 577 static PetscErrorCode PCTelescopeSetIgnoreDM_Telescope(PC pc,PetscBool v) 578 { 579 PC_Telescope red = (PC_Telescope)pc->data; 580 PetscFunctionBegin; 581 red->ignore_dm = v; 582 PetscFunctionReturn(0); 583 } 584 585 static PetscErrorCode PCTelescopeGetIgnoreKSPComputeOperators_Telescope(PC pc,PetscBool *v) 586 { 587 PC_Telescope red = (PC_Telescope)pc->data; 588 PetscFunctionBegin; 589 if (v) *v = red->ignore_kspcomputeoperators; 590 PetscFunctionReturn(0); 591 } 592 static PetscErrorCode PCTelescopeSetIgnoreKSPComputeOperators_Telescope(PC pc,PetscBool v) 593 { 594 PC_Telescope red = (PC_Telescope)pc->data; 595 PetscFunctionBegin; 596 red->ignore_kspcomputeoperators = v; 597 PetscFunctionReturn(0); 598 } 599 600 static PetscErrorCode PCTelescopeGetDM_Telescope(PC pc,DM *dm) 601 { 602 PC_Telescope red = (PC_Telescope)pc->data; 603 PetscFunctionBegin; 604 *dm = private_PCTelescopeGetSubDM(red); 605 PetscFunctionReturn(0); 606 } 607 608 /*@ 609 PCTelescopeGetKSP - Gets the KSP created by the telescoping PC. 610 611 Not Collective 612 613 Input Parameter: 614 . pc - the preconditioner context 615 616 Output Parameter: 617 . subksp - the KSP defined the smaller set of processes 618 619 Level: advanced 620 621 .keywords: PC, telescopting solve 622 @*/ 623 PetscErrorCode PCTelescopeGetKSP(PC pc,KSP *subksp) 624 { 625 PetscErrorCode ierr; 626 PetscFunctionBegin; 627 ierr = PetscTryMethod(pc,"PCTelescopeGetKSP_C",(PC,KSP*),(pc,subksp));CHKERRQ(ierr); 628 PetscFunctionReturn(0); 629 } 630 631 /*@ 632 PCTelescopeGetReductionFactor - Gets the factor by which the original number of processes has been reduced by. 633 634 Not Collective 635 636 Input Parameter: 637 . pc - the preconditioner context 638 639 Output Parameter: 640 . fact - the reduction factor 641 642 Level: advanced 643 644 .keywords: PC, telescoping solve 645 @*/ 646 PetscErrorCode PCTelescopeGetReductionFactor(PC pc,PetscInt *fact) 647 { 648 PetscErrorCode ierr; 649 PetscFunctionBegin; 650 ierr = PetscTryMethod(pc,"PCTelescopeGetReductionFactor_C",(PC,PetscInt*),(pc,fact));CHKERRQ(ierr); 651 PetscFunctionReturn(0); 652 } 653 654 /*@ 655 PCTelescopeSetReductionFactor - Sets the factor by which the original number of processes has been reduced by. 656 657 Not Collective 658 659 Input Parameter: 660 . pc - the preconditioner context 661 662 Output Parameter: 663 . fact - the reduction factor 664 665 Level: advanced 666 667 .keywords: PC, telescoping solve 668 @*/ 669 PetscErrorCode PCTelescopeSetReductionFactor(PC pc,PetscInt fact) 670 { 671 PetscErrorCode ierr; 672 PetscFunctionBegin; 673 ierr = PetscTryMethod(pc,"PCTelescopeSetReductionFactor_C",(PC,PetscInt),(pc,fact));CHKERRQ(ierr); 674 PetscFunctionReturn(0); 675 } 676 677 /*@ 678 PCTelescopeGetIgnoreDM - Get the flag indicating if any DM attached to the PC will be used. 679 680 Not Collective 681 682 Input Parameter: 683 . pc - the preconditioner context 684 685 Output Parameter: 686 . v - the flag 687 688 Level: advanced 689 690 .keywords: PC, telescoping solve 691 @*/ 692 PetscErrorCode PCTelescopeGetIgnoreDM(PC pc,PetscBool *v) 693 { 694 PetscErrorCode ierr; 695 PetscFunctionBegin; 696 ierr = PetscTryMethod(pc,"PCTelescopeGetIgnoreDM_C",(PC,PetscBool*),(pc,v));CHKERRQ(ierr); 697 PetscFunctionReturn(0); 698 } 699 700 /*@ 701 PCTelescopeSetIgnoreDM - Set a flag to ignore any DM attached to the PC. 702 703 Not Collective 704 705 Input Parameter: 706 . pc - the preconditioner context 707 708 Output Parameter: 709 . v - Use PETSC_TRUE to ignore any DM 710 711 Level: advanced 712 713 .keywords: PC, telescoping solve 714 @*/ 715 PetscErrorCode PCTelescopeSetIgnoreDM(PC pc,PetscBool v) 716 { 717 PetscErrorCode ierr; 718 PetscFunctionBegin; 719 ierr = PetscTryMethod(pc,"PCTelescopeSetIgnoreDM_C",(PC,PetscBool),(pc,v));CHKERRQ(ierr); 720 PetscFunctionReturn(0); 721 } 722 723 /*@ 724 PCTelescopeGetIgnoreKSPComputeOperators - Get the flag indicating if KSPComputeOperators will be used. 725 726 Not Collective 727 728 Input Parameter: 729 . pc - the preconditioner context 730 731 Output Parameter: 732 . v - the flag 733 734 Level: advanced 735 736 .keywords: PC, telescoping solve 737 @*/ 738 PetscErrorCode PCTelescopeGetIgnoreKSPComputeOperators(PC pc,PetscBool *v) 739 { 740 PetscErrorCode ierr; 741 PetscFunctionBegin; 742 ierr = PetscTryMethod(pc,"PCTelescopeGetIgnoreKSPComputeOperators_C",(PC,PetscBool*),(pc,v));CHKERRQ(ierr); 743 PetscFunctionReturn(0); 744 } 745 746 /*@ 747 PCTelescopeSetIgnoreKSPComputeOperators - Set a flag to ignore KSPComputeOperators. 748 749 Not Collective 750 751 Input Parameter: 752 . pc - the preconditioner context 753 754 Output Parameter: 755 . v - Use PETSC_TRUE to ignore the method (if defined) set via KSPSetComputeOperators on pc 756 757 Level: advanced 758 759 .keywords: PC, telescoping solve 760 @*/ 761 PetscErrorCode PCTelescopeSetIgnoreKSPComputeOperators(PC pc,PetscBool v) 762 { 763 PetscErrorCode ierr; 764 PetscFunctionBegin; 765 ierr = PetscTryMethod(pc,"PCTelescopeSetIgnoreKSPComputeOperators_C",(PC,PetscBool),(pc,v));CHKERRQ(ierr); 766 PetscFunctionReturn(0); 767 } 768 769 /*@ 770 PCTelescopeGetDM - Get the re-partitioned DM attached to the sub KSP. 771 772 Not Collective 773 774 Input Parameter: 775 . pc - the preconditioner context 776 777 Output Parameter: 778 . subdm - The re-partitioned DM 779 780 Level: advanced 781 782 .keywords: PC, telescoping solve 783 @*/ 784 PetscErrorCode PCTelescopeGetDM(PC pc,DM *subdm) 785 { 786 PetscErrorCode ierr; 787 PetscFunctionBegin; 788 ierr = PetscTryMethod(pc,"PCTelescopeGetDM_C",(PC,DM*),(pc,subdm));CHKERRQ(ierr); 789 PetscFunctionReturn(0); 790 } 791 792 /* -------------------------------------------------------------------------------------*/ 793 /*MC 794 PCTELESCOPE - Runs a KSP solver on a sub-group of processors. MPI processes not in the sub-communicator are idle during the solve. 795 796 Options Database: 797 + -pc_telescope_reduction_factor <n> - factor to use communicator size by, for example if you are using 64 MPI processes and 798 use an n of 4, the new sub-communicator will be 4 defined with 64/4 processes 799 - -pc_telescope_ignore_dm <false> - flag to indicate whether an attached DM should be ignored 800 801 Level: advanced 802 803 Notes: 804 The preconditioner is deemed telescopic as it only calls KSPSolve() on a single 805 sub-communicator in contrast with PCREDUNDANT which calls KSPSolve() on N sub-communicators. 806 This means there will be MPI processes within c, which will be idle during the application of this preconditioner. 807 808 The default KSP is PREONLY. If a DM is attached to the PC, it is re-partitioned on the sub-communicator. 809 Both the B mat operator and the right hand side vector are permuted into the new DOF ordering defined by the re-partitioned DM. 810 Currently only support for re-partitioning a DMDA is provided. 811 Any nullspace attached to the original Bmat operator are extracted, re-partitioned and set on the repartitioned Bmat operator. 812 KSPSetComputeOperators() is not propagated to the sub KSP. 813 Currently there is no support for the flag -pc_use_amat 814 815 Assuming that the parent preconditioner (PC) is defined on a communicator c, this implementation 816 creates a child sub-communicator (c') containing less MPI processes than the original parent preconditioner (PC). 817 818 Developer Notes: 819 During PCSetup, the B operator is scattered onto c'. 820 Within PCApply, the RHS vector (x) is scattered into a redundant vector, xred (defined on c'). 821 Then KSPSolve() is executed on the c' communicator. 822 823 The communicator used within the telescoping preconditioner is defined by a PetscSubcomm using the INTERLACED 824 creation routine. We run the sub KSP on only the ranks within the communicator which have a color equal to zero. 825 826 The telescoping preconditioner is aware of nullspaces which are attached to the only B operator. 827 In case where B has a n nullspace attached, these nullspaces vectors are extract from B and mapped into 828 a new nullspace (defined on the sub-communicator) which is attached to B' (the B operator which was scattered to c') 829 830 The telescoping preconditioner is aware of an attached DM. In the event that the DM is of type DMDA (2D or 3D - 831 1D support for 1D DMDAs is not provided), a new DMDA is created on c' (e.g. it is re-partitioned), and this new DM 832 is attached the sub KSPSolve(). The design of telescope is such that it should be possible to extend support 833 for re-partitioning other DM's (e.g. DMPLEX). The user can supply a flag to ignore attached DMs. 834 835 By default, B' is defined by simply fusing rows from different MPI processes 836 837 When a DMDA is attached to the parent preconditioner, B' is defined by: (i) performing a symmetric permuting of B 838 into the ordering defined by the DMDA on c', (ii) extracting the local chunks via MatGetSubMatrices(), (iii) fusing the 839 locally (sequential) matrices defined on the ranks common to c and c' into B' using MatCreateMPIMatConcatenateSeqMat() 840 841 Limitations/improvements 842 VecPlaceArray could be used within PCApply() to improve efficiency and reduce memory usage. 843 844 The symmetric permutation used when a DMDA is encountered is performed via explicitly assmbleming a permutation matrix P, 845 and performing P^T.A.P. Possibly it might be more efficient to use MatPermute(). I opted to use P^T.A.P as it appears 846 VecPermute() does not supported for the use case required here. By computing P, I can permute both the operator and RHS in a 847 consistent manner. 848 849 Mapping of vectors is performed this way 850 Suppose the parent comm size was 4, and we set a reduction factor of 2, thus would give a comm size on c' of 2. 851 Using the interlaced creation routine, the ranks in c with color = 0, will be rank 0 and 2. 852 We perform the scatter to the sub-comm in the following way, 853 [1] Given a vector x defined on comm c 854 855 rank(c) : _________ 0 ______ ________ 1 _______ ________ 2 _____________ ___________ 3 __________ 856 x : [0, 1, 2, 3, 4, 5] [6, 7, 8, 9, 10, 11] [12, 13, 14, 15, 16, 17] [18, 19, 20, 21, 22, 23] 857 858 scatter to xtmp defined also on comm c so that we have the following values 859 860 rank(c) : ___________________ 0 ________________ _1_ ______________________ 2 _______________________ __3_ 861 xtmp : [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11] [ ] [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23] [ ] 862 863 The entries on rank 1 and 3 (ranks which do not have a color = 0 in c') have no values 864 865 866 [2] Copy the value from rank 0, 2 (indices with respect to comm c) into the vector xred which is defined on communicator c'. 867 Ranks 0 and 2 are the only ranks in the subcomm which have a color = 0. 868 869 rank(c') : ___________________ 0 _______________ ______________________ 1 _____________________ 870 xred : [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11] [12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23] 871 872 873 Contributed by Dave May 874 875 .seealso: PCTelescopeGetKSP(), PCTelescopeGetDM(), PCTelescopeGetReductionFactor(), PCTelescopeSetReductionFactor(), PCTelescopeGetIgnoreDM(), PCTelescopeSetIgnoreDM(), PCREDUNDANT 876 M*/ 877 #undef __FUNCT__ 878 #define __FUNCT__ "PCCreate_Telescope" 879 PETSC_EXTERN PetscErrorCode PCCreate_Telescope(PC pc) 880 { 881 PetscErrorCode ierr; 882 struct _PC_Telescope *sred; 883 884 PetscFunctionBegin; 885 ierr = PetscNewLog(pc,&sred);CHKERRQ(ierr); 886 sred->redfactor = 1; 887 sred->ignore_dm = PETSC_FALSE; 888 sred->ignore_kspcomputeoperators = PETSC_FALSE; 889 pc->data = (void*)sred; 890 891 pc->ops->apply = PCApply_Telescope; 892 pc->ops->applytranspose = NULL; 893 pc->ops->setup = PCSetUp_Telescope; 894 pc->ops->destroy = PCDestroy_Telescope; 895 pc->ops->reset = PCReset_Telescope; 896 pc->ops->setfromoptions = PCSetFromOptions_Telescope; 897 pc->ops->view = PCView_Telescope; 898 899 sred->pctelescope_setup_type = PCTelescopeSetUp_default; 900 sred->pctelescope_matcreate_type = PCTelescopeMatCreate_default; 901 sred->pctelescope_matnullspacecreate_type = PCTelescopeMatNullSpaceCreate_default; 902 sred->pctelescope_reset_type = NULL; 903 904 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeGetKSP_C",PCTelescopeGetKSP_Telescope);CHKERRQ(ierr); 905 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeGetReductionFactor_C",PCTelescopeGetReductionFactor_Telescope);CHKERRQ(ierr); 906 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeSetReductionFactor_C",PCTelescopeSetReductionFactor_Telescope);CHKERRQ(ierr); 907 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeGetIgnoreDM_C",PCTelescopeGetIgnoreDM_Telescope);CHKERRQ(ierr); 908 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeSetIgnoreDM_C",PCTelescopeSetIgnoreDM_Telescope);CHKERRQ(ierr); 909 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeGetIgnoreKSPComputeOperators_C",PCTelescopeGetIgnoreKSPComputeOperators_Telescope);CHKERRQ(ierr); 910 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeSetIgnoreKSPComputeOperators_C",PCTelescopeSetIgnoreKSPComputeOperators_Telescope);CHKERRQ(ierr); 911 ierr = PetscObjectComposeFunction((PetscObject)pc,"PCTelescopeGetDM_C",PCTelescopeGetDM_Telescope);CHKERRQ(ierr); 912 PetscFunctionReturn(0); 913 } 914