xref: /petsc/src/ksp/pc/impls/telescope/telescope_dmda.c (revision b458e8f169278db94fa1d489e1d3db410fc8a4c8)
11e07b27eSBarry Smith 
2120bdd93SDave May 
3120bdd93SDave May #include <petsc/private/matimpl.h>
41e07b27eSBarry Smith #include <petsc/private/pcimpl.h>
55e897e82SDave May #include <petsc/private/dmimpl.h>
61e07b27eSBarry Smith #include <petscksp.h>           /*I "petscksp.h" I*/
71e07b27eSBarry Smith #include <petscdm.h>
81e07b27eSBarry Smith #include <petscdmda.h>
91e07b27eSBarry Smith 
10575a0592SBarry Smith #include "../src/ksp/pc/impls/telescope/telescope.h"
111e07b27eSBarry Smith 
12bf00f589SPatrick Sanan static PetscBool  cited = PETSC_FALSE;
13bf00f589SPatrick Sanan static const char citation[] =
14bf00f589SPatrick Sanan "@inproceedings{MaySananRuppKnepleySmith2016,\n"
15bf00f589SPatrick Sanan "  title     = {Extreme-Scale Multigrid Components within PETSc},\n"
16bf00f589SPatrick Sanan "  author    = {Dave A. May and Patrick Sanan and Karl Rupp and Matthew G. Knepley and Barry F. Smith},\n"
17bf00f589SPatrick Sanan "  booktitle = {Proceedings of the Platform for Advanced Scientific Computing Conference},\n"
18bf00f589SPatrick Sanan "  series    = {PASC '16},\n"
19bf00f589SPatrick Sanan "  isbn      = {978-1-4503-4126-4},\n"
20bf00f589SPatrick Sanan "  location  = {Lausanne, Switzerland},\n"
21bf00f589SPatrick Sanan "  pages     = {5:1--5:12},\n"
22bf00f589SPatrick Sanan "  articleno = {5},\n"
23bf00f589SPatrick Sanan "  numpages  = {12},\n"
24a8d69d7bSBarry Smith "  url       = {https://doi.acm.org/10.1145/2929908.2929913},\n"
25bf00f589SPatrick Sanan "  doi       = {10.1145/2929908.2929913},\n"
26bf00f589SPatrick Sanan "  acmid     = {2929913},\n"
27bf00f589SPatrick Sanan "  publisher = {ACM},\n"
28bf00f589SPatrick Sanan "  address   = {New York, NY, USA},\n"
29bf00f589SPatrick Sanan "  keywords  = {GPU, HPC, agglomeration, coarse-level solver, multigrid, parallel computing, preconditioning},\n"
30bf00f589SPatrick Sanan "  year      = {2016}\n"
31bf00f589SPatrick Sanan "}\n";
32bf00f589SPatrick Sanan 
3357f12427SDave May static PetscErrorCode _DMDADetermineRankFromGlobalIJK(PetscInt dim,PetscInt i,PetscInt j,PetscInt k,
341e07b27eSBarry Smith                                                       PetscInt Mp,PetscInt Np,PetscInt Pp,
351e07b27eSBarry Smith                                                       PetscInt start_i[],PetscInt start_j[],PetscInt start_k[],
361e07b27eSBarry Smith                                                       PetscInt span_i[],PetscInt span_j[],PetscInt span_k[],
371e07b27eSBarry Smith                                                       PetscMPIInt *_pi,PetscMPIInt *_pj,PetscMPIInt *_pk,PetscMPIInt *rank_re)
381e07b27eSBarry Smith {
391e07b27eSBarry Smith   PetscInt pi,pj,pk,n;
401e07b27eSBarry Smith 
411e07b27eSBarry Smith   PetscFunctionBegin;
42137d0469SJed Brown   *rank_re = -1;
43137d0469SJed Brown   if (_pi) *_pi = -1;
44137d0469SJed Brown   if (_pj) *_pj = -1;
45137d0469SJed Brown   if (_pk) *_pk = -1;
461e07b27eSBarry Smith   pi = pj = pk = -1;
471e07b27eSBarry Smith   if (_pi) {
481e07b27eSBarry Smith     for (n=0; n<Mp; n++) {
491e07b27eSBarry Smith       if ((i >= start_i[n]) && (i < start_i[n]+span_i[n])) {
501e07b27eSBarry Smith         pi = n;
511e07b27eSBarry Smith         break;
521e07b27eSBarry Smith       }
531e07b27eSBarry Smith     }
541e07b27eSBarry Smith     if (pi == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"[dmda-ijk] pi cannot be determined : range %D, val %D",Mp,i);
551e07b27eSBarry Smith     *_pi = pi;
561e07b27eSBarry Smith   }
571e07b27eSBarry Smith 
581e07b27eSBarry Smith   if (_pj) {
591e07b27eSBarry Smith     for (n=0; n<Np; n++) {
601e07b27eSBarry Smith       if ((j >= start_j[n]) && (j < start_j[n]+span_j[n])) {
611e07b27eSBarry Smith         pj = n;
621e07b27eSBarry Smith         break;
631e07b27eSBarry Smith       }
641e07b27eSBarry Smith     }
651e07b27eSBarry Smith     if (pj == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"[dmda-ijk] pj cannot be determined : range %D, val %D",Np,j);
661e07b27eSBarry Smith     *_pj = pj;
671e07b27eSBarry Smith   }
681e07b27eSBarry Smith 
691e07b27eSBarry Smith   if (_pk) {
701e07b27eSBarry Smith     for (n=0; n<Pp; n++) {
711e07b27eSBarry Smith       if ((k >= start_k[n]) && (k < start_k[n]+span_k[n])) {
721e07b27eSBarry Smith         pk = n;
731e07b27eSBarry Smith         break;
741e07b27eSBarry Smith       }
751e07b27eSBarry Smith     }
761e07b27eSBarry Smith     if (pk == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_USER,"[dmda-ijk] pk cannot be determined : range %D, val %D",Pp,k);
771e07b27eSBarry Smith     *_pk = pk;
781e07b27eSBarry Smith   }
791e07b27eSBarry Smith 
801e07b27eSBarry Smith   switch (dim) {
811e07b27eSBarry Smith   case 1:
821e07b27eSBarry Smith     *rank_re = pi;
831e07b27eSBarry Smith     break;
841e07b27eSBarry Smith   case 2:
851e07b27eSBarry Smith     *rank_re = pi + pj * Mp;
861e07b27eSBarry Smith     break;
871e07b27eSBarry Smith   case 3:
881e07b27eSBarry Smith     *rank_re = pi + pj * Mp + pk * (Mp*Np);
891e07b27eSBarry Smith     break;
901e07b27eSBarry Smith   }
911e07b27eSBarry Smith   PetscFunctionReturn(0);
921e07b27eSBarry Smith }
931e07b27eSBarry Smith 
9457f12427SDave May static PetscErrorCode _DMDADetermineGlobalS0(PetscInt dim,PetscMPIInt rank_re,PetscInt Mp_re,PetscInt Np_re,PetscInt Pp_re,
951e07b27eSBarry Smith                                       PetscInt range_i_re[],PetscInt range_j_re[],PetscInt range_k_re[],PetscInt *s0)
961e07b27eSBarry Smith {
97c6a0d831SBarry Smith   PetscInt i,j,k,start_IJK = 0;
981e07b27eSBarry Smith   PetscInt rank_ijk;
991e07b27eSBarry Smith 
1001e07b27eSBarry Smith   PetscFunctionBegin;
1011e07b27eSBarry Smith   switch (dim) {
1021e07b27eSBarry Smith   case 1:
1031e07b27eSBarry Smith     for (i=0; i<Mp_re; i++) {
1041e07b27eSBarry Smith       rank_ijk = i;
1051e07b27eSBarry Smith       if (rank_ijk < rank_re) {
1061e07b27eSBarry Smith         start_IJK += range_i_re[i];
1071e07b27eSBarry Smith       }
1081e07b27eSBarry Smith     }
1091e07b27eSBarry Smith     break;
1101e07b27eSBarry Smith     case 2:
1111e07b27eSBarry Smith     for (j=0; j<Np_re; j++) {
1121e07b27eSBarry Smith       for (i=0; i<Mp_re; i++) {
1131e07b27eSBarry Smith         rank_ijk = i + j*Mp_re;
1141e07b27eSBarry Smith         if (rank_ijk < rank_re) {
1151e07b27eSBarry Smith           start_IJK += range_i_re[i]*range_j_re[j];
1161e07b27eSBarry Smith         }
1171e07b27eSBarry Smith       }
1181e07b27eSBarry Smith     }
1191e07b27eSBarry Smith     break;
1201e07b27eSBarry Smith     case 3:
1211e07b27eSBarry Smith     for (k=0; k<Pp_re; k++) {
1221e07b27eSBarry Smith       for (j=0; j<Np_re; j++) {
1231e07b27eSBarry Smith         for (i=0; i<Mp_re; i++) {
1241e07b27eSBarry Smith           rank_ijk = i + j*Mp_re + k*Mp_re*Np_re;
1251e07b27eSBarry Smith           if (rank_ijk < rank_re) {
1261e07b27eSBarry Smith             start_IJK += range_i_re[i]*range_j_re[j]*range_k_re[k];
1271e07b27eSBarry Smith           }
1281e07b27eSBarry Smith         }
1291e07b27eSBarry Smith       }
1301e07b27eSBarry Smith     }
1311e07b27eSBarry Smith     break;
1321e07b27eSBarry Smith   }
1331e07b27eSBarry Smith   *s0 = start_IJK;
1341e07b27eSBarry Smith   PetscFunctionReturn(0);
1351e07b27eSBarry Smith }
1361e07b27eSBarry Smith 
13757f12427SDave May static PetscErrorCode PCTelescopeSetUp_dmda_repart_coors2d(PC_Telescope sred,DM dm,DM subdm)
1381e07b27eSBarry Smith {
1391e07b27eSBarry Smith   PetscErrorCode ierr;
1401e07b27eSBarry Smith   DM             cdm;
1411e07b27eSBarry Smith   Vec            coor,coor_natural,perm_coors;
1421e07b27eSBarry Smith   PetscInt       i,j,si,sj,ni,nj,M,N,Ml,Nl,c,nidx;
1431e07b27eSBarry Smith   PetscInt       *fine_indices;
1441e07b27eSBarry Smith   IS             is_fine,is_local;
1451e07b27eSBarry Smith   VecScatter     sctx;
1461e07b27eSBarry Smith 
1471e07b27eSBarry Smith   PetscFunctionBegin;
1481e07b27eSBarry Smith   ierr = DMGetCoordinates(dm,&coor);CHKERRQ(ierr);
1491e07b27eSBarry Smith   if (!coor) return(0);
15057f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
1511e07b27eSBarry Smith     ierr = DMDASetUniformCoordinates(subdm,0.0,1.0,0.0,1.0,0.0,1.0);CHKERRQ(ierr);
1521e07b27eSBarry Smith   }
1531e07b27eSBarry Smith   /* Get the coordinate vector from the distributed array */
1541e07b27eSBarry Smith   ierr = DMGetCoordinateDM(dm,&cdm);CHKERRQ(ierr);
1551e07b27eSBarry Smith   ierr = DMDACreateNaturalVector(cdm,&coor_natural);CHKERRQ(ierr);
1561e07b27eSBarry Smith 
1571e07b27eSBarry Smith   ierr = DMDAGlobalToNaturalBegin(cdm,coor,INSERT_VALUES,coor_natural);CHKERRQ(ierr);
1581e07b27eSBarry Smith   ierr = DMDAGlobalToNaturalEnd(cdm,coor,INSERT_VALUES,coor_natural);CHKERRQ(ierr);
1591e07b27eSBarry Smith 
1601e07b27eSBarry Smith   /* get indices of the guys I want to grab */
1611e07b27eSBarry Smith   ierr = DMDAGetInfo(dm,NULL,&M,&N,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
16257f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
1631e07b27eSBarry Smith     ierr = DMDAGetCorners(subdm,&si,&sj,NULL,&ni,&nj,NULL);CHKERRQ(ierr);
16415dd08bcSBarry Smith     Ml = ni;
16515dd08bcSBarry Smith     Nl = nj;
1661e07b27eSBarry Smith   } else {
167c41e779fSDave May     si = sj = 0;
168c41e779fSDave May     ni = nj = 0;
1693ac26c5eSBarry Smith     Ml = Nl = 0;
1701e07b27eSBarry Smith   }
1711e07b27eSBarry Smith 
172e3acf2f7SBarry Smith   ierr = PetscMalloc1(Ml*Nl*2,&fine_indices);CHKERRQ(ierr);
1731e07b27eSBarry Smith   c = 0;
17457f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
1751e07b27eSBarry Smith     for (j=sj; j<sj+nj; j++) {
1761e07b27eSBarry Smith       for (i=si; i<si+ni; i++) {
1771e07b27eSBarry Smith         nidx = (i) + (j)*M;
1781e07b27eSBarry Smith         fine_indices[c  ] = 2 * nidx     ;
1791e07b27eSBarry Smith         fine_indices[c+1] = 2 * nidx + 1 ;
1801e07b27eSBarry Smith         c = c + 2;
1811e07b27eSBarry Smith       }
1821e07b27eSBarry Smith     }
183c2be2c73SBarry Smith     if (c != Ml*Nl*2) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"c %D should equal 2 * Ml %D * Nl %D",c,Ml,Nl);
1841e07b27eSBarry Smith   }
1851e07b27eSBarry Smith 
1861e07b27eSBarry Smith   /* generate scatter */
1871e07b27eSBarry Smith   ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm),Ml*Nl*2,fine_indices,PETSC_USE_POINTER,&is_fine);CHKERRQ(ierr);
1881e07b27eSBarry Smith   ierr = ISCreateStride(PETSC_COMM_SELF,Ml*Nl*2,0,1,&is_local);CHKERRQ(ierr);
1891e07b27eSBarry Smith 
1901e07b27eSBarry Smith   /* scatter */
1911e07b27eSBarry Smith   ierr = VecCreate(PETSC_COMM_SELF,&perm_coors);CHKERRQ(ierr);
1921e07b27eSBarry Smith   ierr = VecSetSizes(perm_coors,PETSC_DECIDE,Ml*Nl*2);CHKERRQ(ierr);
1931e07b27eSBarry Smith   ierr = VecSetType(perm_coors,VECSEQ);CHKERRQ(ierr);
1941e07b27eSBarry Smith 
1959448b7f1SJunchao Zhang   ierr = VecScatterCreate(coor_natural,is_fine,perm_coors,is_local,&sctx);CHKERRQ(ierr);
1961e07b27eSBarry Smith   ierr = VecScatterBegin(sctx,coor_natural,perm_coors,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1971e07b27eSBarry Smith   ierr = VecScatterEnd(  sctx,coor_natural,perm_coors,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1981e07b27eSBarry Smith   /* access */
19957f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
2001e07b27eSBarry Smith     Vec               _coors;
2011e07b27eSBarry Smith     const PetscScalar *LA_perm;
2021e07b27eSBarry Smith     PetscScalar       *LA_coors;
2031e07b27eSBarry Smith 
2041e07b27eSBarry Smith     ierr = DMGetCoordinates(subdm,&_coors);CHKERRQ(ierr);
2051e07b27eSBarry Smith     ierr = VecGetArrayRead(perm_coors,&LA_perm);CHKERRQ(ierr);
2061e07b27eSBarry Smith     ierr = VecGetArray(_coors,&LA_coors);CHKERRQ(ierr);
2071e07b27eSBarry Smith     for (i=0; i<Ml*Nl*2; i++) {
2081e07b27eSBarry Smith       LA_coors[i] = LA_perm[i];
2091e07b27eSBarry Smith     }
2101e07b27eSBarry Smith     ierr = VecRestoreArray(_coors,&LA_coors);CHKERRQ(ierr);
2111e07b27eSBarry Smith     ierr = VecRestoreArrayRead(perm_coors,&LA_perm);CHKERRQ(ierr);
2121e07b27eSBarry Smith   }
2131e07b27eSBarry Smith 
2141e07b27eSBarry Smith   /* update local coords */
21557f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
2161e07b27eSBarry Smith     DM  _dmc;
2171e07b27eSBarry Smith     Vec _coors,_coors_local;
2181e07b27eSBarry Smith     ierr = DMGetCoordinateDM(subdm,&_dmc);CHKERRQ(ierr);
2191e07b27eSBarry Smith     ierr = DMGetCoordinates(subdm,&_coors);CHKERRQ(ierr);
2201e07b27eSBarry Smith     ierr = DMGetCoordinatesLocal(subdm,&_coors_local);CHKERRQ(ierr);
2211e07b27eSBarry Smith     ierr = DMGlobalToLocalBegin(_dmc,_coors,INSERT_VALUES,_coors_local);CHKERRQ(ierr);
2221e07b27eSBarry Smith     ierr = DMGlobalToLocalEnd(_dmc,_coors,INSERT_VALUES,_coors_local);CHKERRQ(ierr);
2231e07b27eSBarry Smith   }
2241e07b27eSBarry Smith   ierr = VecScatterDestroy(&sctx);CHKERRQ(ierr);
2251e07b27eSBarry Smith   ierr = ISDestroy(&is_fine);CHKERRQ(ierr);
2261e07b27eSBarry Smith   ierr = PetscFree(fine_indices);CHKERRQ(ierr);
2271e07b27eSBarry Smith   ierr = ISDestroy(&is_local);CHKERRQ(ierr);
2281e07b27eSBarry Smith   ierr = VecDestroy(&perm_coors);CHKERRQ(ierr);
2291e07b27eSBarry Smith   ierr = VecDestroy(&coor_natural);CHKERRQ(ierr);
2301e07b27eSBarry Smith   PetscFunctionReturn(0);
2311e07b27eSBarry Smith }
2321e07b27eSBarry Smith 
23357f12427SDave May static PetscErrorCode PCTelescopeSetUp_dmda_repart_coors3d(PC_Telescope sred,DM dm,DM subdm)
2341e07b27eSBarry Smith {
2351e07b27eSBarry Smith   PetscErrorCode ierr;
2361e07b27eSBarry Smith   DM             cdm;
2371e07b27eSBarry Smith   Vec            coor,coor_natural,perm_coors;
2381e07b27eSBarry Smith   PetscInt       i,j,k,si,sj,sk,ni,nj,nk,M,N,P,Ml,Nl,Pl,c,nidx;
2391e07b27eSBarry Smith   PetscInt       *fine_indices;
2401e07b27eSBarry Smith   IS             is_fine,is_local;
2411e07b27eSBarry Smith   VecScatter     sctx;
2421e07b27eSBarry Smith 
2431e07b27eSBarry Smith   PetscFunctionBegin;
2441e07b27eSBarry Smith   ierr = DMGetCoordinates(dm,&coor);CHKERRQ(ierr);
2451e07b27eSBarry Smith   if (!coor) PetscFunctionReturn(0);
2461e07b27eSBarry Smith 
24757f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
2481e07b27eSBarry Smith     ierr = DMDASetUniformCoordinates(subdm,0.0,1.0,0.0,1.0,0.0,1.0);CHKERRQ(ierr);
2491e07b27eSBarry Smith   }
2501e07b27eSBarry Smith 
2511e07b27eSBarry Smith   /* Get the coordinate vector from the distributed array */
2521e07b27eSBarry Smith   ierr = DMGetCoordinateDM(dm,&cdm);CHKERRQ(ierr);
2531e07b27eSBarry Smith   ierr = DMDACreateNaturalVector(cdm,&coor_natural);CHKERRQ(ierr);
2541e07b27eSBarry Smith   ierr = DMDAGlobalToNaturalBegin(cdm,coor,INSERT_VALUES,coor_natural);CHKERRQ(ierr);
2551e07b27eSBarry Smith   ierr = DMDAGlobalToNaturalEnd(cdm,coor,INSERT_VALUES,coor_natural);CHKERRQ(ierr);
2561e07b27eSBarry Smith 
2571e07b27eSBarry Smith   /* get indices of the guys I want to grab */
2581e07b27eSBarry Smith   ierr = DMDAGetInfo(dm,NULL,&M,&N,&P,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
2591e07b27eSBarry Smith 
26057f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
2611e07b27eSBarry Smith     ierr = DMDAGetCorners(subdm,&si,&sj,&sk,&ni,&nj,&nk);CHKERRQ(ierr);
262553d0ae9SBarry Smith     Ml = ni;
263553d0ae9SBarry Smith     Nl = nj;
264553d0ae9SBarry Smith     Pl = nk;
2651e07b27eSBarry Smith   } else {
266c41e779fSDave May     si = sj = sk = 0;
267c41e779fSDave May     ni = nj = nk = 0;
2683ac26c5eSBarry Smith     Ml = Nl = Pl = 0;
2691e07b27eSBarry Smith   }
2701e07b27eSBarry Smith 
271e3acf2f7SBarry Smith   ierr = PetscMalloc1(Ml*Nl*Pl*3,&fine_indices);CHKERRQ(ierr);
2721e07b27eSBarry Smith 
2731e07b27eSBarry Smith   c = 0;
27457f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
2751e07b27eSBarry Smith     for (k=sk; k<sk+nk; k++) {
2761e07b27eSBarry Smith       for (j=sj; j<sj+nj; j++) {
2771e07b27eSBarry Smith         for (i=si; i<si+ni; i++) {
2781e07b27eSBarry Smith           nidx = (i) + (j)*M + (k)*M*N;
2791e07b27eSBarry Smith           fine_indices[c  ] = 3 * nidx     ;
2801e07b27eSBarry Smith           fine_indices[c+1] = 3 * nidx + 1 ;
2811e07b27eSBarry Smith           fine_indices[c+2] = 3 * nidx + 2 ;
2821e07b27eSBarry Smith           c = c + 3;
2831e07b27eSBarry Smith         }
2841e07b27eSBarry Smith       }
2851e07b27eSBarry Smith     }
2861e07b27eSBarry Smith   }
2871e07b27eSBarry Smith 
2881e07b27eSBarry Smith   /* generate scatter */
2891e07b27eSBarry Smith   ierr = ISCreateGeneral(PetscObjectComm((PetscObject)dm),Ml*Nl*Pl*3,fine_indices,PETSC_USE_POINTER,&is_fine);CHKERRQ(ierr);
2901e07b27eSBarry Smith   ierr = ISCreateStride(PETSC_COMM_SELF,Ml*Nl*Pl*3,0,1,&is_local);CHKERRQ(ierr);
2911e07b27eSBarry Smith 
2921e07b27eSBarry Smith   /* scatter */
2931e07b27eSBarry Smith   ierr = VecCreate(PETSC_COMM_SELF,&perm_coors);CHKERRQ(ierr);
2941e07b27eSBarry Smith   ierr = VecSetSizes(perm_coors,PETSC_DECIDE,Ml*Nl*Pl*3);CHKERRQ(ierr);
2951e07b27eSBarry Smith   ierr = VecSetType(perm_coors,VECSEQ);CHKERRQ(ierr);
2969448b7f1SJunchao Zhang   ierr = VecScatterCreate(coor_natural,is_fine,perm_coors,is_local,&sctx);CHKERRQ(ierr);
2971e07b27eSBarry Smith   ierr = VecScatterBegin(sctx,coor_natural,perm_coors,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2981e07b27eSBarry Smith   ierr = VecScatterEnd(  sctx,coor_natural,perm_coors,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2991e07b27eSBarry Smith 
3001e07b27eSBarry Smith   /* access */
30157f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
3021e07b27eSBarry Smith     Vec               _coors;
3031e07b27eSBarry Smith     const PetscScalar *LA_perm;
3041e07b27eSBarry Smith     PetscScalar       *LA_coors;
3051e07b27eSBarry Smith 
3061e07b27eSBarry Smith     ierr = DMGetCoordinates(subdm,&_coors);CHKERRQ(ierr);
3071e07b27eSBarry Smith     ierr = VecGetArrayRead(perm_coors,&LA_perm);CHKERRQ(ierr);
3081e07b27eSBarry Smith     ierr = VecGetArray(_coors,&LA_coors);CHKERRQ(ierr);
3091e07b27eSBarry Smith     for (i=0; i<Ml*Nl*Pl*3; i++) {
3101e07b27eSBarry Smith       LA_coors[i] = LA_perm[i];
3111e07b27eSBarry Smith     }
3121e07b27eSBarry Smith     ierr = VecRestoreArray(_coors,&LA_coors);CHKERRQ(ierr);
3131e07b27eSBarry Smith     ierr = VecRestoreArrayRead(perm_coors,&LA_perm);CHKERRQ(ierr);
3141e07b27eSBarry Smith   }
3151e07b27eSBarry Smith 
3161e07b27eSBarry Smith   /* update local coords */
31757f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
3181e07b27eSBarry Smith     DM  _dmc;
3191e07b27eSBarry Smith     Vec _coors,_coors_local;
3201e07b27eSBarry Smith 
3211e07b27eSBarry Smith     ierr = DMGetCoordinateDM(subdm,&_dmc);CHKERRQ(ierr);
3221e07b27eSBarry Smith     ierr = DMGetCoordinates(subdm,&_coors);CHKERRQ(ierr);
3231e07b27eSBarry Smith     ierr = DMGetCoordinatesLocal(subdm,&_coors_local);CHKERRQ(ierr);
3241e07b27eSBarry Smith     ierr = DMGlobalToLocalBegin(_dmc,_coors,INSERT_VALUES,_coors_local);CHKERRQ(ierr);
3251e07b27eSBarry Smith     ierr = DMGlobalToLocalEnd(_dmc,_coors,INSERT_VALUES,_coors_local);CHKERRQ(ierr);
3261e07b27eSBarry Smith   }
3271e07b27eSBarry Smith 
3281e07b27eSBarry Smith   ierr = VecScatterDestroy(&sctx);CHKERRQ(ierr);
3291e07b27eSBarry Smith   ierr = ISDestroy(&is_fine);CHKERRQ(ierr);
3301e07b27eSBarry Smith   ierr = PetscFree(fine_indices);CHKERRQ(ierr);
3311e07b27eSBarry Smith   ierr = ISDestroy(&is_local);CHKERRQ(ierr);
3321e07b27eSBarry Smith   ierr = VecDestroy(&perm_coors);CHKERRQ(ierr);
3331e07b27eSBarry Smith   ierr = VecDestroy(&coor_natural);CHKERRQ(ierr);
3341e07b27eSBarry Smith   PetscFunctionReturn(0);
3351e07b27eSBarry Smith }
3361e07b27eSBarry Smith 
33757f12427SDave May static PetscErrorCode PCTelescopeSetUp_dmda_repart_coors(PC pc,PC_Telescope sred,PC_Telescope_DMDACtx *ctx)
3381e07b27eSBarry Smith {
3391e07b27eSBarry Smith   PetscInt       dim;
3401e07b27eSBarry Smith   DM             dm,subdm;
3411e07b27eSBarry Smith   PetscSubcomm   psubcomm;
3421e07b27eSBarry Smith   MPI_Comm       comm;
3431e07b27eSBarry Smith   Vec            coor;
3441e07b27eSBarry Smith   PetscErrorCode ierr;
3451e07b27eSBarry Smith 
3461e07b27eSBarry Smith   PetscFunctionBegin;
3471e07b27eSBarry Smith   ierr = PCGetDM(pc,&dm);CHKERRQ(ierr);
3481e07b27eSBarry Smith   ierr = DMGetCoordinates(dm,&coor);CHKERRQ(ierr);
3491e07b27eSBarry Smith   if (!coor) PetscFunctionReturn(0);
3501e07b27eSBarry Smith   psubcomm = sred->psubcomm;
3511e07b27eSBarry Smith   comm = PetscSubcommParent(psubcomm);
3521e07b27eSBarry Smith   subdm = ctx->dmrepart;
3531e07b27eSBarry Smith 
3541e07b27eSBarry Smith   ierr = PetscInfo(pc,"PCTelescope: setting up the coordinates (DMDA)\n");CHKERRQ(ierr);
3551e07b27eSBarry Smith   ierr = DMDAGetInfo(dm,&dim,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
3561e07b27eSBarry Smith   switch (dim) {
357*b458e8f1SJose E. Roman   case 1:
358*b458e8f1SJose E. Roman     SETERRQ(comm,PETSC_ERR_SUP,"Telescope: DMDA (1D) repartitioning not provided");
35957f12427SDave May   case 2: ierr = PCTelescopeSetUp_dmda_repart_coors2d(sred,dm,subdm);CHKERRQ(ierr);
3601e07b27eSBarry Smith     break;
36157f12427SDave May   case 3: ierr = PCTelescopeSetUp_dmda_repart_coors3d(sred,dm,subdm);CHKERRQ(ierr);
3621e07b27eSBarry Smith     break;
3631e07b27eSBarry Smith   }
3641e07b27eSBarry Smith   PetscFunctionReturn(0);
3651e07b27eSBarry Smith }
3661e07b27eSBarry Smith 
3671e07b27eSBarry Smith /* setup repartitioned dm */
3681e07b27eSBarry Smith PetscErrorCode PCTelescopeSetUp_dmda_repart(PC pc,PC_Telescope sred,PC_Telescope_DMDACtx *ctx)
3691e07b27eSBarry Smith {
3701e07b27eSBarry Smith   PetscErrorCode        ierr;
3711e07b27eSBarry Smith   DM                    dm;
3721e07b27eSBarry Smith   PetscInt              dim,nx,ny,nz,ndof,nsw,sum,k;
3731e07b27eSBarry Smith   DMBoundaryType        bx,by,bz;
3741e07b27eSBarry Smith   DMDAStencilType       stencil;
3751e07b27eSBarry Smith   const PetscInt        *_range_i_re;
3761e07b27eSBarry Smith   const PetscInt        *_range_j_re;
3771e07b27eSBarry Smith   const PetscInt        *_range_k_re;
3781e07b27eSBarry Smith   DMDAInterpolationType itype;
3791e07b27eSBarry Smith   PetscInt              refine_x,refine_y,refine_z;
3801e07b27eSBarry Smith   MPI_Comm              comm,subcomm;
3811e07b27eSBarry Smith   const char            *prefix;
3821e07b27eSBarry Smith 
3831e07b27eSBarry Smith   PetscFunctionBegin;
3841e07b27eSBarry Smith   comm = PetscSubcommParent(sred->psubcomm);
3851e07b27eSBarry Smith   subcomm = PetscSubcommChild(sred->psubcomm);
3861e07b27eSBarry Smith   ierr = PCGetDM(pc,&dm);CHKERRQ(ierr);
3871e07b27eSBarry Smith 
3881e07b27eSBarry Smith   ierr = DMDAGetInfo(dm,&dim,&nx,&ny,&nz,NULL,NULL,NULL,&ndof,&nsw,&bx,&by,&bz,&stencil);CHKERRQ(ierr);
3891e07b27eSBarry Smith   ierr = DMDAGetInterpolationType(dm,&itype);CHKERRQ(ierr);
3901e07b27eSBarry Smith   ierr = DMDAGetRefinementFactor(dm,&refine_x,&refine_y,&refine_z);CHKERRQ(ierr);
3911e07b27eSBarry Smith 
3921e07b27eSBarry Smith   ctx->dmrepart = NULL;
3931e07b27eSBarry Smith   _range_i_re = _range_j_re = _range_k_re = NULL;
3941e07b27eSBarry Smith   /* Create DMDA on the child communicator */
39557f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
3961e07b27eSBarry Smith     switch (dim) {
3971e07b27eSBarry Smith     case 1:
3981e07b27eSBarry Smith       ierr = PetscInfo(pc,"PCTelescope: setting up the DMDA on comm subset (1D)\n");CHKERRQ(ierr);
3991e07b27eSBarry Smith       /*ierr = DMDACreate1d(subcomm,bx,nx,ndof,nsw,NULL,&ctx->dmrepart);CHKERRQ(ierr);*/
4001e07b27eSBarry Smith       ny = nz = 1;
4011e07b27eSBarry Smith       by = bz = DM_BOUNDARY_NONE;
4021e07b27eSBarry Smith       break;
4031e07b27eSBarry Smith     case 2:
4041e07b27eSBarry Smith       ierr = PetscInfo(pc,"PCTelescope: setting up the DMDA on comm subset (2D)\n");CHKERRQ(ierr);
4051e07b27eSBarry Smith       /*ierr = DMDACreate2d(subcomm,bx,by,stencil,nx,ny, PETSC_DECIDE,PETSC_DECIDE, ndof,nsw, NULL,NULL,&ctx->dmrepart);CHKERRQ(ierr);*/
4061e07b27eSBarry Smith       nz = 1;
4071e07b27eSBarry Smith       bz = DM_BOUNDARY_NONE;
4081e07b27eSBarry Smith       break;
4091e07b27eSBarry Smith     case 3:
4101e07b27eSBarry Smith       ierr = PetscInfo(pc,"PCTelescope: setting up the DMDA on comm subset (3D)\n");CHKERRQ(ierr);
4111e07b27eSBarry Smith       /*ierr = DMDACreate3d(subcomm,bx,by,bz,stencil,nx,ny,nz, PETSC_DECIDE,PETSC_DECIDE,PETSC_DECIDE, ndof,nsw, NULL,NULL,NULL,&ctx->dmrepart);CHKERRQ(ierr);*/
4121e07b27eSBarry Smith       break;
4131e07b27eSBarry Smith     }
4141e07b27eSBarry Smith     /*
4151e07b27eSBarry Smith      The API DMDACreate1d(), DMDACreate2d(), DMDACreate3d() does not allow us to set/append
4161e07b27eSBarry Smith      a unique option prefix for the DM, thus I prefer to expose the contents of these API's here.
4171e07b27eSBarry Smith      This allows users to control the partitioning of the subDM.
4181e07b27eSBarry Smith     */
4191e07b27eSBarry Smith     ierr = DMDACreate(subcomm,&ctx->dmrepart);CHKERRQ(ierr);
4201e07b27eSBarry Smith     /* Set unique option prefix name */
4217c5279cbSDave May     ierr = KSPGetOptionsPrefix(sred->ksp,&prefix);CHKERRQ(ierr);
4221e07b27eSBarry Smith     ierr = DMSetOptionsPrefix(ctx->dmrepart,prefix);CHKERRQ(ierr);
4231e07b27eSBarry Smith     ierr = DMAppendOptionsPrefix(ctx->dmrepart,"repart_");CHKERRQ(ierr);
4241e07b27eSBarry Smith     /* standard setup from DMDACreate{1,2,3}d() */
4251e07b27eSBarry Smith     ierr = DMSetDimension(ctx->dmrepart,dim);CHKERRQ(ierr);
4261e07b27eSBarry Smith     ierr = DMDASetSizes(ctx->dmrepart,nx,ny,nz);CHKERRQ(ierr);
4271e07b27eSBarry Smith     ierr = DMDASetNumProcs(ctx->dmrepart,PETSC_DECIDE,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
4281e07b27eSBarry Smith     ierr = DMDASetBoundaryType(ctx->dmrepart,bx,by,bz);CHKERRQ(ierr);
4291e07b27eSBarry Smith     ierr = DMDASetDof(ctx->dmrepart,ndof);CHKERRQ(ierr);
4301e07b27eSBarry Smith     ierr = DMDASetStencilType(ctx->dmrepart,stencil);CHKERRQ(ierr);
4311e07b27eSBarry Smith     ierr = DMDASetStencilWidth(ctx->dmrepart,nsw);CHKERRQ(ierr);
4321e07b27eSBarry Smith     ierr = DMDASetOwnershipRanges(ctx->dmrepart,NULL,NULL,NULL);CHKERRQ(ierr);
4331e07b27eSBarry Smith     ierr = DMSetFromOptions(ctx->dmrepart);CHKERRQ(ierr);
4341e07b27eSBarry Smith     ierr = DMSetUp(ctx->dmrepart);CHKERRQ(ierr);
4351e07b27eSBarry Smith     /* Set refinement factors and interpolation type from the partent */
4361e07b27eSBarry Smith     ierr = DMDASetRefinementFactor(ctx->dmrepart,refine_x,refine_y,refine_z);CHKERRQ(ierr);
4371e07b27eSBarry Smith     ierr = DMDASetInterpolationType(ctx->dmrepart,itype);CHKERRQ(ierr);
4381e07b27eSBarry Smith 
4391e07b27eSBarry Smith     ierr = DMDAGetInfo(ctx->dmrepart,NULL,NULL,NULL,NULL,&ctx->Mp_re,&ctx->Np_re,&ctx->Pp_re,NULL,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
4401e07b27eSBarry Smith     ierr = DMDAGetOwnershipRanges(ctx->dmrepart,&_range_i_re,&_range_j_re,&_range_k_re);CHKERRQ(ierr);
4415e897e82SDave May 
4425e897e82SDave May     ctx->dmrepart->ops->creatematrix = dm->ops->creatematrix;
4435e897e82SDave May     ctx->dmrepart->ops->createdomaindecomposition = dm->ops->createdomaindecomposition;
4441e07b27eSBarry Smith   }
4451e07b27eSBarry Smith 
4461e07b27eSBarry Smith   /* generate ranges for repartitioned dm */
4471e07b27eSBarry Smith   /* note - assume rank 0 always participates */
448071fcb05SBarry Smith   /* TODO: use a single MPI call */
4491e07b27eSBarry Smith   ierr = MPI_Bcast(&ctx->Mp_re,1,MPIU_INT,0,comm);CHKERRQ(ierr);
4501e07b27eSBarry Smith   ierr = MPI_Bcast(&ctx->Np_re,1,MPIU_INT,0,comm);CHKERRQ(ierr);
4511e07b27eSBarry Smith   ierr = MPI_Bcast(&ctx->Pp_re,1,MPIU_INT,0,comm);CHKERRQ(ierr);
4521e07b27eSBarry Smith 
453071fcb05SBarry Smith   ierr = PetscCalloc3(ctx->Mp_re,&ctx->range_i_re,ctx->Np_re,&ctx->range_j_re,ctx->Pp_re,&ctx->range_k_re);CHKERRQ(ierr);
4541e07b27eSBarry Smith 
455580bdb30SBarry Smith   if (_range_i_re) {ierr = PetscArraycpy(ctx->range_i_re,_range_i_re,ctx->Mp_re);CHKERRQ(ierr);}
456580bdb30SBarry Smith   if (_range_j_re) {ierr = PetscArraycpy(ctx->range_j_re,_range_j_re,ctx->Np_re);CHKERRQ(ierr);}
457580bdb30SBarry Smith   if (_range_k_re) {ierr = PetscArraycpy(ctx->range_k_re,_range_k_re,ctx->Pp_re);CHKERRQ(ierr);}
4581e07b27eSBarry Smith 
459071fcb05SBarry Smith   /* TODO: use a single MPI call */
4601e07b27eSBarry Smith   ierr = MPI_Bcast(ctx->range_i_re,ctx->Mp_re,MPIU_INT,0,comm);CHKERRQ(ierr);
4611e07b27eSBarry Smith   ierr = MPI_Bcast(ctx->range_j_re,ctx->Np_re,MPIU_INT,0,comm);CHKERRQ(ierr);
4621e07b27eSBarry Smith   ierr = MPI_Bcast(ctx->range_k_re,ctx->Pp_re,MPIU_INT,0,comm);CHKERRQ(ierr);
4631e07b27eSBarry Smith 
464071fcb05SBarry Smith   ierr = PetscMalloc3(ctx->Mp_re,&ctx->start_i_re,ctx->Np_re,&ctx->start_j_re,ctx->Pp_re,&ctx->start_k_re);CHKERRQ(ierr);
4651e07b27eSBarry Smith 
4661e07b27eSBarry Smith   sum = 0;
4671e07b27eSBarry Smith   for (k=0; k<ctx->Mp_re; k++) {
4681e07b27eSBarry Smith     ctx->start_i_re[k] = sum;
4691e07b27eSBarry Smith     sum += ctx->range_i_re[k];
4701e07b27eSBarry Smith   }
4711e07b27eSBarry Smith 
4721e07b27eSBarry Smith   sum = 0;
4731e07b27eSBarry Smith   for (k=0; k<ctx->Np_re; k++) {
4741e07b27eSBarry Smith     ctx->start_j_re[k] = sum;
4751e07b27eSBarry Smith     sum += ctx->range_j_re[k];
4761e07b27eSBarry Smith   }
4771e07b27eSBarry Smith 
4781e07b27eSBarry Smith   sum = 0;
4791e07b27eSBarry Smith   for (k=0; k<ctx->Pp_re; k++) {
4801e07b27eSBarry Smith     ctx->start_k_re[k] = sum;
4811e07b27eSBarry Smith     sum += ctx->range_k_re[k];
4821e07b27eSBarry Smith   }
4831e07b27eSBarry Smith 
484ba1c3560SDave May   /* attach repartitioned dm to child ksp */
485ba1c3560SDave May   {
486ba1c3560SDave May     PetscErrorCode (*dmksp_func)(KSP,Mat,Mat,void*);
487ba1c3560SDave May     void           *dmksp_ctx;
488ba1c3560SDave May 
489ba1c3560SDave May     ierr = DMKSPGetComputeOperators(dm,&dmksp_func,&dmksp_ctx);CHKERRQ(ierr);
490ba1c3560SDave May 
4911e07b27eSBarry Smith     /* attach dm to ksp on sub communicator */
49257f12427SDave May     if (PCTelescope_isActiveRank(sred)) {
4931e07b27eSBarry Smith       ierr = KSPSetDM(sred->ksp,ctx->dmrepart);CHKERRQ(ierr);
494ba1c3560SDave May 
495c5db1f53SDave May       if (!dmksp_func || sred->ignore_kspcomputeoperators) {
4961e07b27eSBarry Smith         ierr = KSPSetDMActive(sred->ksp,PETSC_FALSE);CHKERRQ(ierr);
497ba1c3560SDave May       } else {
498ba1c3560SDave May         /* sub ksp inherits dmksp_func and context provided by user */
499ba1c3560SDave May         ierr = KSPSetComputeOperators(sred->ksp,dmksp_func,dmksp_ctx);CHKERRQ(ierr);
500ba1c3560SDave May         ierr = KSPSetDMActive(sred->ksp,PETSC_TRUE);CHKERRQ(ierr);
501ba1c3560SDave May       }
502ba1c3560SDave May     }
5031e07b27eSBarry Smith   }
5041e07b27eSBarry Smith   PetscFunctionReturn(0);
5051e07b27eSBarry Smith }
5061e07b27eSBarry Smith 
5071e07b27eSBarry Smith PetscErrorCode PCTelescopeSetUp_dmda_permutation_3d(PC pc,PC_Telescope sred,PC_Telescope_DMDACtx *ctx)
5081e07b27eSBarry Smith {
5091e07b27eSBarry Smith   PetscErrorCode ierr;
5101e07b27eSBarry Smith   DM             dm;
5111e07b27eSBarry Smith   MPI_Comm       comm;
5121e07b27eSBarry Smith   Mat            Pscalar,P;
5131e07b27eSBarry Smith   PetscInt       ndof;
5141e07b27eSBarry Smith   PetscInt       i,j,k,location,startI[3],endI[3],lenI[3],nx,ny,nz;
5151e07b27eSBarry Smith   PetscInt       sr,er,Mr;
5161e07b27eSBarry Smith   Vec            V;
5171e07b27eSBarry Smith 
5181e07b27eSBarry Smith   PetscFunctionBegin;
5191e07b27eSBarry Smith   ierr = PetscInfo(pc,"PCTelescope: setting up the permutation matrix (DMDA-3D)\n");CHKERRQ(ierr);
5201e07b27eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr);
5211e07b27eSBarry Smith 
5221e07b27eSBarry Smith   ierr = PCGetDM(pc,&dm);CHKERRQ(ierr);
5231e07b27eSBarry Smith   ierr = DMDAGetInfo(dm,NULL,&nx,&ny,&nz,NULL,NULL,NULL,&ndof,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
5241e07b27eSBarry Smith 
5251e07b27eSBarry Smith   ierr = DMGetGlobalVector(dm,&V);CHKERRQ(ierr);
5261e07b27eSBarry Smith   ierr = VecGetSize(V,&Mr);CHKERRQ(ierr);
5271e07b27eSBarry Smith   ierr = VecGetOwnershipRange(V,&sr,&er);CHKERRQ(ierr);
5281e07b27eSBarry Smith   ierr = DMRestoreGlobalVector(dm,&V);CHKERRQ(ierr);
5291e07b27eSBarry Smith   sr = sr / ndof;
5301e07b27eSBarry Smith   er = er / ndof;
5311e07b27eSBarry Smith   Mr = Mr / ndof;
5321e07b27eSBarry Smith 
5331e07b27eSBarry Smith   ierr = MatCreate(comm,&Pscalar);CHKERRQ(ierr);
5341e07b27eSBarry Smith   ierr = MatSetSizes(Pscalar,(er-sr),(er-sr),Mr,Mr);CHKERRQ(ierr);
5351e07b27eSBarry Smith   ierr = MatSetType(Pscalar,MATAIJ);CHKERRQ(ierr);
536308c2a70SDave May   ierr = MatSeqAIJSetPreallocation(Pscalar,1,NULL);CHKERRQ(ierr);
537308c2a70SDave May   ierr = MatMPIAIJSetPreallocation(Pscalar,1,NULL,1,NULL);CHKERRQ(ierr);
5381e07b27eSBarry Smith 
5391e07b27eSBarry Smith   ierr = DMDAGetCorners(dm,NULL,NULL,NULL,&lenI[0],&lenI[1],&lenI[2]);CHKERRQ(ierr);
5401e07b27eSBarry Smith   ierr = DMDAGetCorners(dm,&startI[0],&startI[1],&startI[2],&endI[0],&endI[1],&endI[2]);CHKERRQ(ierr);
5411e07b27eSBarry Smith   endI[0] += startI[0];
5421e07b27eSBarry Smith   endI[1] += startI[1];
5431e07b27eSBarry Smith   endI[2] += startI[2];
5441e07b27eSBarry Smith 
5451e07b27eSBarry Smith   for (k=startI[2]; k<endI[2]; k++) {
5461e07b27eSBarry Smith     for (j=startI[1]; j<endI[1]; j++) {
5471e07b27eSBarry Smith       for (i=startI[0]; i<endI[0]; i++) {
5481e07b27eSBarry Smith         PetscMPIInt rank_ijk_re,rank_reI[3];
5491e07b27eSBarry Smith         PetscInt    s0_re;
550c6a0d831SBarry Smith         PetscInt    ii,jj,kk,local_ijk_re,mapped_ijk;
5511e07b27eSBarry Smith         PetscInt    lenI_re[3];
5521e07b27eSBarry Smith 
5531e07b27eSBarry Smith         location = (i - startI[0]) + (j - startI[1])*lenI[0] + (k - startI[2])*lenI[0]*lenI[1];
5541e07b27eSBarry Smith         ierr = _DMDADetermineRankFromGlobalIJK(3,i,j,k,   ctx->Mp_re,ctx->Np_re,ctx->Pp_re,
5551e07b27eSBarry Smith                                                ctx->start_i_re,ctx->start_j_re,ctx->start_k_re,
5561e07b27eSBarry Smith                                                ctx->range_i_re,ctx->range_j_re,ctx->range_k_re,
5571e07b27eSBarry Smith                                                &rank_reI[0],&rank_reI[1],&rank_reI[2],&rank_ijk_re);CHKERRQ(ierr);
5581e07b27eSBarry Smith         ierr = _DMDADetermineGlobalS0(3,rank_ijk_re, ctx->Mp_re,ctx->Np_re,ctx->Pp_re, ctx->range_i_re,ctx->range_j_re,ctx->range_k_re, &s0_re);CHKERRQ(ierr);
5591e07b27eSBarry Smith         ii = i - ctx->start_i_re[ rank_reI[0] ];
5601e07b27eSBarry Smith         if (ii < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"[dmdarepart-perm3d] index error ii");
5611e07b27eSBarry Smith         jj = j - ctx->start_j_re[ rank_reI[1] ];
5621e07b27eSBarry Smith         if (jj < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"[dmdarepart-perm3d] index error jj");
5631e07b27eSBarry Smith         kk = k - ctx->start_k_re[ rank_reI[2] ];
5641e07b27eSBarry Smith         if (kk < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"[dmdarepart-perm3d] index error kk");
5651e07b27eSBarry Smith         lenI_re[0] = ctx->range_i_re[ rank_reI[0] ];
5661e07b27eSBarry Smith         lenI_re[1] = ctx->range_j_re[ rank_reI[1] ];
5671e07b27eSBarry Smith         lenI_re[2] = ctx->range_k_re[ rank_reI[2] ];
5681e07b27eSBarry Smith         local_ijk_re = ii + jj * lenI_re[0] + kk * lenI_re[0] * lenI_re[1];
5691e07b27eSBarry Smith         mapped_ijk = s0_re + local_ijk_re;
5701e07b27eSBarry Smith         ierr = MatSetValue(Pscalar,sr+location,mapped_ijk,1.0,INSERT_VALUES);CHKERRQ(ierr);
5711e07b27eSBarry Smith       }
5721e07b27eSBarry Smith     }
5731e07b27eSBarry Smith   }
5741e07b27eSBarry Smith   ierr = MatAssemblyBegin(Pscalar,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
5751e07b27eSBarry Smith   ierr = MatAssemblyEnd(Pscalar,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
5761e07b27eSBarry Smith   ierr = MatCreateMAIJ(Pscalar,ndof,&P);CHKERRQ(ierr);
5771e07b27eSBarry Smith   ierr = MatDestroy(&Pscalar);CHKERRQ(ierr);
5781e07b27eSBarry Smith   ctx->permutation = P;
5791e07b27eSBarry Smith   PetscFunctionReturn(0);
5801e07b27eSBarry Smith }
5811e07b27eSBarry Smith 
5821e07b27eSBarry Smith PetscErrorCode PCTelescopeSetUp_dmda_permutation_2d(PC pc,PC_Telescope sred,PC_Telescope_DMDACtx *ctx)
5831e07b27eSBarry Smith {
5841e07b27eSBarry Smith   PetscErrorCode ierr;
5851e07b27eSBarry Smith   DM             dm;
5861e07b27eSBarry Smith   MPI_Comm       comm;
5871e07b27eSBarry Smith   Mat            Pscalar,P;
5881e07b27eSBarry Smith   PetscInt       ndof;
5891e07b27eSBarry Smith   PetscInt       i,j,location,startI[2],endI[2],lenI[2],nx,ny,nz;
5901e07b27eSBarry Smith   PetscInt       sr,er,Mr;
5911e07b27eSBarry Smith   Vec            V;
5921e07b27eSBarry Smith 
5931e07b27eSBarry Smith   PetscFunctionBegin;
5941e07b27eSBarry Smith   ierr = PetscInfo(pc,"PCTelescope: setting up the permutation matrix (DMDA-2D)\n");CHKERRQ(ierr);
5951e07b27eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr);
5961e07b27eSBarry Smith   ierr = PCGetDM(pc,&dm);CHKERRQ(ierr);
5971e07b27eSBarry Smith   ierr = DMDAGetInfo(dm,NULL,&nx,&ny,&nz,NULL,NULL,NULL,&ndof,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
5981e07b27eSBarry Smith   ierr = DMGetGlobalVector(dm,&V);CHKERRQ(ierr);
5991e07b27eSBarry Smith   ierr = VecGetSize(V,&Mr);CHKERRQ(ierr);
6001e07b27eSBarry Smith   ierr = VecGetOwnershipRange(V,&sr,&er);CHKERRQ(ierr);
6011e07b27eSBarry Smith   ierr = DMRestoreGlobalVector(dm,&V);CHKERRQ(ierr);
6021e07b27eSBarry Smith   sr = sr / ndof;
6031e07b27eSBarry Smith   er = er / ndof;
6041e07b27eSBarry Smith   Mr = Mr / ndof;
6051e07b27eSBarry Smith 
6061e07b27eSBarry Smith   ierr = MatCreate(comm,&Pscalar);CHKERRQ(ierr);
6071e07b27eSBarry Smith   ierr = MatSetSizes(Pscalar,(er-sr),(er-sr),Mr,Mr);CHKERRQ(ierr);
6081e07b27eSBarry Smith   ierr = MatSetType(Pscalar,MATAIJ);CHKERRQ(ierr);
609308c2a70SDave May   ierr = MatSeqAIJSetPreallocation(Pscalar,1,NULL);CHKERRQ(ierr);
610308c2a70SDave May   ierr = MatMPIAIJSetPreallocation(Pscalar,1,NULL,1,NULL);CHKERRQ(ierr);
6111e07b27eSBarry Smith 
6121e07b27eSBarry Smith   ierr = DMDAGetCorners(dm,NULL,NULL,NULL,&lenI[0],&lenI[1],NULL);CHKERRQ(ierr);
6131e07b27eSBarry Smith   ierr = DMDAGetCorners(dm,&startI[0],&startI[1],NULL,&endI[0],&endI[1],NULL);CHKERRQ(ierr);
6141e07b27eSBarry Smith   endI[0] += startI[0];
6151e07b27eSBarry Smith   endI[1] += startI[1];
6161e07b27eSBarry Smith 
6171e07b27eSBarry Smith   for (j=startI[1]; j<endI[1]; j++) {
6181e07b27eSBarry Smith     for (i=startI[0]; i<endI[0]; i++) {
6191e07b27eSBarry Smith       PetscMPIInt rank_ijk_re,rank_reI[3];
6201e07b27eSBarry Smith       PetscInt    s0_re;
621c6a0d831SBarry Smith       PetscInt    ii,jj,local_ijk_re,mapped_ijk;
6221e07b27eSBarry Smith       PetscInt    lenI_re[3];
6231e07b27eSBarry Smith 
6241e07b27eSBarry Smith       location = (i - startI[0]) + (j - startI[1])*lenI[0];
6251e07b27eSBarry Smith       ierr = _DMDADetermineRankFromGlobalIJK(2,i,j,0,   ctx->Mp_re,ctx->Np_re,ctx->Pp_re,
6261e07b27eSBarry Smith                                              ctx->start_i_re,ctx->start_j_re,ctx->start_k_re,
6271e07b27eSBarry Smith                                              ctx->range_i_re,ctx->range_j_re,ctx->range_k_re,
6281e07b27eSBarry Smith                                              &rank_reI[0],&rank_reI[1],NULL,&rank_ijk_re);CHKERRQ(ierr);
6291e07b27eSBarry Smith 
6301e07b27eSBarry Smith       ierr = _DMDADetermineGlobalS0(2,rank_ijk_re, ctx->Mp_re,ctx->Np_re,ctx->Pp_re, ctx->range_i_re,ctx->range_j_re,ctx->range_k_re, &s0_re);CHKERRQ(ierr);
6311e07b27eSBarry Smith 
6321e07b27eSBarry Smith       ii = i - ctx->start_i_re[ rank_reI[0] ];
6331e07b27eSBarry Smith       if (ii < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"[dmdarepart-perm2d] index error ii");
6341e07b27eSBarry Smith       jj = j - ctx->start_j_re[ rank_reI[1] ];
6351e07b27eSBarry Smith       if (jj < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_USER,"[dmdarepart-perm2d] index error jj");
6361e07b27eSBarry Smith 
6371e07b27eSBarry Smith       lenI_re[0] = ctx->range_i_re[ rank_reI[0] ];
6381e07b27eSBarry Smith       lenI_re[1] = ctx->range_j_re[ rank_reI[1] ];
6391e07b27eSBarry Smith       local_ijk_re = ii + jj * lenI_re[0];
6401e07b27eSBarry Smith       mapped_ijk = s0_re + local_ijk_re;
6411e07b27eSBarry Smith       ierr = MatSetValue(Pscalar,sr+location,mapped_ijk,1.0,INSERT_VALUES);CHKERRQ(ierr);
6421e07b27eSBarry Smith     }
6431e07b27eSBarry Smith   }
6441e07b27eSBarry Smith   ierr = MatAssemblyBegin(Pscalar,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6451e07b27eSBarry Smith   ierr = MatAssemblyEnd(Pscalar,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6461e07b27eSBarry Smith   ierr = MatCreateMAIJ(Pscalar,ndof,&P);CHKERRQ(ierr);
6471e07b27eSBarry Smith   ierr = MatDestroy(&Pscalar);CHKERRQ(ierr);
6481e07b27eSBarry Smith   ctx->permutation = P;
6491e07b27eSBarry Smith   PetscFunctionReturn(0);
6501e07b27eSBarry Smith }
6511e07b27eSBarry Smith 
6521e07b27eSBarry Smith PetscErrorCode PCTelescopeSetUp_dmda_scatters(PC pc,PC_Telescope sred,PC_Telescope_DMDACtx *ctx)
6531e07b27eSBarry Smith {
6541e07b27eSBarry Smith   PetscErrorCode ierr;
6551e07b27eSBarry Smith   Vec            xred,yred,xtmp,x,xp;
6561e07b27eSBarry Smith   VecScatter     scatter;
6571e07b27eSBarry Smith   IS             isin;
6581e07b27eSBarry Smith   Mat            B;
6591e07b27eSBarry Smith   PetscInt       m,bs,st,ed;
6601e07b27eSBarry Smith   MPI_Comm       comm;
6611e07b27eSBarry Smith 
6621e07b27eSBarry Smith   PetscFunctionBegin;
6631e07b27eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr);
6641e07b27eSBarry Smith   ierr = PCGetOperators(pc,NULL,&B);CHKERRQ(ierr);
6651e07b27eSBarry Smith   ierr = MatCreateVecs(B,&x,NULL);CHKERRQ(ierr);
6661e07b27eSBarry Smith   ierr = MatGetBlockSize(B,&bs);CHKERRQ(ierr);
6671e07b27eSBarry Smith   ierr = VecDuplicate(x,&xp);CHKERRQ(ierr);
6683ac26c5eSBarry Smith   m = 0;
6691e07b27eSBarry Smith   xred = NULL;
6701e07b27eSBarry Smith   yred = NULL;
67157f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
6721e07b27eSBarry Smith     ierr = DMCreateGlobalVector(ctx->dmrepart,&xred);CHKERRQ(ierr);
6731e07b27eSBarry Smith     ierr = VecDuplicate(xred,&yred);CHKERRQ(ierr);
6741e07b27eSBarry Smith     ierr = VecGetOwnershipRange(xred,&st,&ed);CHKERRQ(ierr);
6751e07b27eSBarry Smith     ierr = ISCreateStride(comm,ed-st,st,1,&isin);CHKERRQ(ierr);
676ca43db0aSBarry Smith     ierr = VecGetLocalSize(xred,&m);CHKERRQ(ierr);
6771e07b27eSBarry Smith   } else {
6781e07b27eSBarry Smith     ierr = VecGetOwnershipRange(x,&st,&ed);CHKERRQ(ierr);
6793ac26c5eSBarry Smith     ierr = ISCreateStride(comm,0,st,1,&isin);CHKERRQ(ierr);
6801e07b27eSBarry Smith   }
6811e07b27eSBarry Smith   ierr = ISSetBlockSize(isin,bs);CHKERRQ(ierr);
6821e07b27eSBarry Smith   ierr = VecCreate(comm,&xtmp);CHKERRQ(ierr);
6831e07b27eSBarry Smith   ierr = VecSetSizes(xtmp,m,PETSC_DECIDE);CHKERRQ(ierr);
6841e07b27eSBarry Smith   ierr = VecSetBlockSize(xtmp,bs);CHKERRQ(ierr);
6851e07b27eSBarry Smith   ierr = VecSetType(xtmp,((PetscObject)x)->type_name);CHKERRQ(ierr);
6869448b7f1SJunchao Zhang   ierr = VecScatterCreate(x,isin,xtmp,NULL,&scatter);CHKERRQ(ierr);
6871e07b27eSBarry Smith   sred->xred    = xred;
6881e07b27eSBarry Smith   sred->yred    = yred;
6891e07b27eSBarry Smith   sred->isin    = isin;
6901e07b27eSBarry Smith   sred->scatter = scatter;
6911e07b27eSBarry Smith   sred->xtmp    = xtmp;
6921e07b27eSBarry Smith 
6931e07b27eSBarry Smith   ctx->xp       = xp;
6941e07b27eSBarry Smith   ierr = VecDestroy(&x);CHKERRQ(ierr);
6951e07b27eSBarry Smith   PetscFunctionReturn(0);
6961e07b27eSBarry Smith }
6971e07b27eSBarry Smith 
6981e07b27eSBarry Smith PetscErrorCode PCTelescopeSetUp_dmda(PC pc,PC_Telescope sred)
6991e07b27eSBarry Smith {
7001e07b27eSBarry Smith   PC_Telescope_DMDACtx *ctx;
7011e07b27eSBarry Smith   PetscInt             dim;
7021e07b27eSBarry Smith   DM                   dm;
7031e07b27eSBarry Smith   MPI_Comm             comm;
7041e07b27eSBarry Smith   PetscErrorCode       ierr;
7051e07b27eSBarry Smith 
7061e07b27eSBarry Smith   PetscFunctionBegin;
7071e07b27eSBarry Smith   ierr = PetscInfo(pc,"PCTelescope: setup (DMDA)\n");CHKERRQ(ierr);
708580bdb30SBarry Smith   ierr = PetscNew(&ctx);CHKERRQ(ierr);
7091e07b27eSBarry Smith   sred->dm_ctx = (void*)ctx;
7101e07b27eSBarry Smith 
7111e07b27eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr);
7121e07b27eSBarry Smith   ierr = PCGetDM(pc,&dm);CHKERRQ(ierr);
7131e07b27eSBarry Smith   ierr = DMDAGetInfo(dm,&dim,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
7141e07b27eSBarry Smith 
7151e07b27eSBarry Smith   PCTelescopeSetUp_dmda_repart(pc,sred,ctx);
7161e07b27eSBarry Smith   PCTelescopeSetUp_dmda_repart_coors(pc,sred,ctx);
7171e07b27eSBarry Smith   switch (dim) {
718*b458e8f1SJose E. Roman   case 1:
719*b458e8f1SJose E. Roman     SETERRQ(comm,PETSC_ERR_SUP,"Telescope: DMDA (1D) repartitioning not provided");
7201e07b27eSBarry Smith   case 2: ierr = PCTelescopeSetUp_dmda_permutation_2d(pc,sred,ctx);CHKERRQ(ierr);
7211e07b27eSBarry Smith     break;
7221e07b27eSBarry Smith   case 3: ierr = PCTelescopeSetUp_dmda_permutation_3d(pc,sred,ctx);CHKERRQ(ierr);
7231e07b27eSBarry Smith     break;
7241e07b27eSBarry Smith   }
7251e07b27eSBarry Smith   ierr = PCTelescopeSetUp_dmda_scatters(pc,sred,ctx);CHKERRQ(ierr);
7261e07b27eSBarry Smith   PetscFunctionReturn(0);
7271e07b27eSBarry Smith }
7281e07b27eSBarry Smith 
729ba1c3560SDave May PetscErrorCode PCTelescopeMatCreate_dmda_dmactivefalse(PC pc,PC_Telescope sred,MatReuse reuse,Mat *A)
7301e07b27eSBarry Smith {
7311e07b27eSBarry Smith   PetscErrorCode       ierr;
7321e07b27eSBarry Smith   PC_Telescope_DMDACtx *ctx;
7331e07b27eSBarry Smith   MPI_Comm             comm,subcomm;
7341e07b27eSBarry Smith   Mat                  Bperm,Bred,B,P;
7351e07b27eSBarry Smith   PetscInt             nr,nc;
7361e07b27eSBarry Smith   IS                   isrow,iscol;
7371e07b27eSBarry Smith   Mat                  Blocal,*_Blocal;
7381e07b27eSBarry Smith 
7391e07b27eSBarry Smith   PetscFunctionBegin;
7401e07b27eSBarry Smith   ierr = PetscInfo(pc,"PCTelescope: updating the redundant preconditioned operator (DMDA)\n");CHKERRQ(ierr);
7411e07b27eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)pc,&comm);CHKERRQ(ierr);
7421e07b27eSBarry Smith   subcomm = PetscSubcommChild(sred->psubcomm);
7431e07b27eSBarry Smith   ctx = (PC_Telescope_DMDACtx*)sred->dm_ctx;
7441e07b27eSBarry Smith 
7451e07b27eSBarry Smith   ierr = PCGetOperators(pc,NULL,&B);CHKERRQ(ierr);
7461e07b27eSBarry Smith   ierr = MatGetSize(B,&nr,&nc);CHKERRQ(ierr);
7471e07b27eSBarry Smith 
7481e07b27eSBarry Smith   P = ctx->permutation;
7491e07b27eSBarry Smith   ierr = MatPtAP(B,P,MAT_INITIAL_MATRIX,1.1,&Bperm);CHKERRQ(ierr);
7501e07b27eSBarry Smith 
7511e07b27eSBarry Smith   /* Get submatrices */
7521e07b27eSBarry Smith   isrow = sred->isin;
7531e07b27eSBarry Smith   ierr = ISCreateStride(comm,nc,0,1,&iscol);CHKERRQ(ierr);
7541e07b27eSBarry Smith 
7557dae84e0SHong Zhang   ierr = MatCreateSubMatrices(Bperm,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&_Blocal);CHKERRQ(ierr);
7561e07b27eSBarry Smith   Blocal = *_Blocal;
7571e07b27eSBarry Smith   Bred = NULL;
75857f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
7591e07b27eSBarry Smith     PetscInt mm;
7601e07b27eSBarry Smith 
7611e07b27eSBarry Smith     if (reuse != MAT_INITIAL_MATRIX) {Bred = *A;}
7621e07b27eSBarry Smith     ierr = MatGetSize(Blocal,&mm,NULL);CHKERRQ(ierr);
763bfd6bcc6SSatish Balay     /* ierr = MatCreateMPIMatConcatenateSeqMat(subcomm,Blocal,PETSC_DECIDE,reuse,&Bred);CHKERRQ(ierr); */
7641e07b27eSBarry Smith     ierr = MatCreateMPIMatConcatenateSeqMat(subcomm,Blocal,mm,reuse,&Bred);CHKERRQ(ierr);
7651e07b27eSBarry Smith   }
7661e07b27eSBarry Smith   *A = Bred;
7671e07b27eSBarry Smith 
7681e07b27eSBarry Smith   ierr = ISDestroy(&iscol);CHKERRQ(ierr);
7691e07b27eSBarry Smith   ierr = MatDestroy(&Bperm);CHKERRQ(ierr);
7701e07b27eSBarry Smith   ierr = MatDestroyMatrices(1,&_Blocal);CHKERRQ(ierr);
7711e07b27eSBarry Smith   PetscFunctionReturn(0);
7721e07b27eSBarry Smith }
7731e07b27eSBarry Smith 
774ba1c3560SDave May PetscErrorCode PCTelescopeMatCreate_dmda(PC pc,PC_Telescope sred,MatReuse reuse,Mat *A)
775ba1c3560SDave May {
776ba1c3560SDave May   PetscErrorCode ierr;
777ba1c3560SDave May   DM             dm;
778ba1c3560SDave May   PetscErrorCode (*dmksp_func)(KSP,Mat,Mat,void*);
779ba1c3560SDave May   void           *dmksp_ctx;
780ba1c3560SDave May 
781ba1c3560SDave May   PetscFunctionBegin;
782ba1c3560SDave May   ierr = PCGetDM(pc,&dm);CHKERRQ(ierr);
783ba1c3560SDave May   ierr = DMKSPGetComputeOperators(dm,&dmksp_func,&dmksp_ctx);CHKERRQ(ierr);
784dc9ee9fdSDave May   /* We assume that dmksp_func = NULL, is equivalent to dmActive = PETSC_FALSE */
7857c5279cbSDave May   if (dmksp_func && !sred->ignore_kspcomputeoperators) {
786ba1c3560SDave May     DM  dmrepart;
78728323a89SDave May     Mat Ak;
788ba1c3560SDave May 
789ba1c3560SDave May     *A = NULL;
79057f12427SDave May     if (PCTelescope_isActiveRank(sred)) {
791ba1c3560SDave May       ierr = KSPGetDM(sred->ksp,&dmrepart);CHKERRQ(ierr);
792ba1c3560SDave May       if (reuse == MAT_INITIAL_MATRIX) {
793ba1c3560SDave May         ierr = DMCreateMatrix(dmrepart,&Ak);CHKERRQ(ierr);
794ba1c3560SDave May         *A = Ak;
795ba1c3560SDave May       } else if (reuse == MAT_REUSE_MATRIX) {
796ba1c3560SDave May         Ak = *A;
797ba1c3560SDave May       }
7985c5dbb1cSDave May       /*
7995c5dbb1cSDave May        There is no need to explicitly assemble the operator now,
8005c5dbb1cSDave May        the sub-KSP will call the method provided to KSPSetComputeOperators() during KSPSetUp()
8015c5dbb1cSDave May       */
802ba1c3560SDave May     }
803ba1c3560SDave May   } else {
804ba1c3560SDave May     ierr = PCTelescopeMatCreate_dmda_dmactivefalse(pc,sred,reuse,A);CHKERRQ(ierr);
805ba1c3560SDave May   }
806ba1c3560SDave May   PetscFunctionReturn(0);
807ba1c3560SDave May }
808ba1c3560SDave May 
809392968a1SPatrick Sanan PetscErrorCode PCTelescopeSubNullSpaceCreate_dmda_Telescope(PC pc,PC_Telescope sred,MatNullSpace nullspace,MatNullSpace *sub_nullspace)
8101e07b27eSBarry Smith {
8111e07b27eSBarry Smith   PetscErrorCode       ierr;
8121e07b27eSBarry Smith   PetscBool            has_const;
813a947c41eSDave May   PetscInt             i,k,n = 0;
8141e07b27eSBarry Smith   const Vec            *vecs;
815c41e779fSDave May   Vec                  *sub_vecs = NULL;
8161e07b27eSBarry Smith   MPI_Comm             subcomm;
8171e07b27eSBarry Smith   PC_Telescope_DMDACtx *ctx;
8181e07b27eSBarry Smith 
8191e07b27eSBarry Smith   PetscFunctionBegin;
8201e07b27eSBarry Smith   ctx = (PC_Telescope_DMDACtx*)sred->dm_ctx;
8211e07b27eSBarry Smith   subcomm = PetscSubcommChild(sred->psubcomm);
8221e07b27eSBarry Smith   ierr = MatNullSpaceGetVecs(nullspace,&has_const,&n,&vecs);CHKERRQ(ierr);
8231e07b27eSBarry Smith 
82457f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
8251e07b27eSBarry Smith     /* create new vectors */
826e3acf2f7SBarry Smith     if (n) {
827e3acf2f7SBarry Smith       ierr = VecDuplicateVecs(sred->xred,n,&sub_vecs);CHKERRQ(ierr);
8281e07b27eSBarry Smith     }
8291e07b27eSBarry Smith   }
8301e07b27eSBarry Smith 
8311e07b27eSBarry Smith   /* copy entries */
8321e07b27eSBarry Smith   for (k=0; k<n; k++) {
8331e07b27eSBarry Smith     const PetscScalar *x_array;
8341e07b27eSBarry Smith     PetscScalar       *LA_sub_vec;
83513c30530SDave May     PetscInt          st,ed;
8361e07b27eSBarry Smith 
8371e07b27eSBarry Smith     /* permute vector into ordering associated with re-partitioned dmda */
8381e07b27eSBarry Smith     ierr = MatMultTranspose(ctx->permutation,vecs[k],ctx->xp);CHKERRQ(ierr);
8391e07b27eSBarry Smith 
8401e07b27eSBarry Smith     /* pull in vector x->xtmp */
8411e07b27eSBarry Smith     ierr = VecScatterBegin(sred->scatter,ctx->xp,sred->xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
8421e07b27eSBarry Smith     ierr = VecScatterEnd(sred->scatter,ctx->xp,sred->xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
8431e07b27eSBarry Smith 
844392968a1SPatrick Sanan     /* copy vector entries into xred */
8451e07b27eSBarry Smith     ierr = VecGetArrayRead(sred->xtmp,&x_array);CHKERRQ(ierr);
846ea2b237eSDave May     if (sub_vecs) {
847ea2b237eSDave May       if (sub_vecs[k]) {
8481e07b27eSBarry Smith         ierr = VecGetOwnershipRange(sub_vecs[k],&st,&ed);CHKERRQ(ierr);
8491e07b27eSBarry Smith         ierr = VecGetArray(sub_vecs[k],&LA_sub_vec);CHKERRQ(ierr);
8501e07b27eSBarry Smith         for (i=0; i<ed-st; i++) {
8511e07b27eSBarry Smith           LA_sub_vec[i] = x_array[i];
8521e07b27eSBarry Smith         }
8531e07b27eSBarry Smith         ierr = VecRestoreArray(sub_vecs[k],&LA_sub_vec);CHKERRQ(ierr);
8541e07b27eSBarry Smith       }
855ea2b237eSDave May     }
8561e07b27eSBarry Smith     ierr = VecRestoreArrayRead(sred->xtmp,&x_array);CHKERRQ(ierr);
8571e07b27eSBarry Smith   }
8581e07b27eSBarry Smith 
85957f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
860d8b9d5b7SPatrick Sanan     /* create new (near) nullspace for redundant object */
861392968a1SPatrick Sanan     ierr = MatNullSpaceCreate(subcomm,has_const,n,sub_vecs,sub_nullspace);CHKERRQ(ierr);
862392968a1SPatrick Sanan     ierr = VecDestroyVecs(n,&sub_vecs);CHKERRQ(ierr);
863d8b9d5b7SPatrick Sanan     if (nullspace->remove) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Propagation of custom remove callbacks not supported when propagating (near) nullspaces with PCTelescope");
864d8b9d5b7SPatrick Sanan     if (nullspace->rmctx) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"Propagation of custom remove callback context not supported when propagating (near) nullspaces with PCTelescope");
865d8b9d5b7SPatrick Sanan   }
866392968a1SPatrick Sanan   PetscFunctionReturn(0);
867392968a1SPatrick Sanan }
868392968a1SPatrick Sanan 
869392968a1SPatrick Sanan PetscErrorCode PCTelescopeMatNullSpaceCreate_dmda(PC pc,PC_Telescope sred,Mat sub_mat)
870392968a1SPatrick Sanan {
871392968a1SPatrick Sanan   PetscErrorCode ierr;
872392968a1SPatrick Sanan   Mat            B;
873392968a1SPatrick Sanan 
874392968a1SPatrick Sanan   PetscFunctionBegin;
875392968a1SPatrick Sanan   ierr = PCGetOperators(pc,NULL,&B);CHKERRQ(ierr);
876392968a1SPatrick Sanan   {
877392968a1SPatrick Sanan     MatNullSpace nullspace,sub_nullspace;
878392968a1SPatrick Sanan     ierr = MatGetNullSpace(B,&nullspace);CHKERRQ(ierr);
879392968a1SPatrick Sanan     if (nullspace) {
880392968a1SPatrick Sanan       ierr = PetscInfo(pc,"PCTelescope: generating nullspace (DMDA)\n");CHKERRQ(ierr);
881392968a1SPatrick Sanan       ierr = PCTelescopeSubNullSpaceCreate_dmda_Telescope(pc,sred,nullspace,&sub_nullspace);CHKERRQ(ierr);
88257f12427SDave May       if (PCTelescope_isActiveRank(sred)) {
883392968a1SPatrick Sanan         ierr = MatSetNullSpace(sub_mat,sub_nullspace);CHKERRQ(ierr);
88441ff1ee9SPatrick Sanan         ierr = MatNullSpaceDestroy(&sub_nullspace);CHKERRQ(ierr);
8851e07b27eSBarry Smith       }
886392968a1SPatrick Sanan     }
887392968a1SPatrick Sanan   }
888392968a1SPatrick Sanan   {
889392968a1SPatrick Sanan     MatNullSpace nearnullspace,sub_nearnullspace;
89064f1816dSDave May     ierr = MatGetNearNullSpace(B,&nearnullspace);CHKERRQ(ierr);
891392968a1SPatrick Sanan     if (nearnullspace) {
892392968a1SPatrick Sanan       ierr = PetscInfo(pc,"PCTelescope: generating near nullspace (DMDA)\n");CHKERRQ(ierr);
893392968a1SPatrick Sanan       ierr = PCTelescopeSubNullSpaceCreate_dmda_Telescope(pc,sred,nearnullspace,&sub_nearnullspace);CHKERRQ(ierr);
89457f12427SDave May       if (PCTelescope_isActiveRank(sred)) {
89564f1816dSDave May         ierr = MatSetNearNullSpace(sub_mat,sub_nearnullspace);CHKERRQ(ierr);
896392968a1SPatrick Sanan         ierr = MatNullSpaceDestroy(&sub_nearnullspace);CHKERRQ(ierr);
897392968a1SPatrick Sanan       }
898392968a1SPatrick Sanan     }
899392968a1SPatrick Sanan   }
9001e07b27eSBarry Smith   PetscFunctionReturn(0);
9011e07b27eSBarry Smith }
9021e07b27eSBarry Smith 
9031e07b27eSBarry Smith PetscErrorCode PCApply_Telescope_dmda(PC pc,Vec x,Vec y)
9041e07b27eSBarry Smith {
9051e07b27eSBarry Smith   PC_Telescope         sred = (PC_Telescope)pc->data;
9061e07b27eSBarry Smith   PetscErrorCode       ierr;
9071e07b27eSBarry Smith   Mat                  perm;
9081e07b27eSBarry Smith   Vec                  xtmp,xp,xred,yred;
90913c30530SDave May   PetscInt             i,st,ed;
9101e07b27eSBarry Smith   VecScatter           scatter;
9111e07b27eSBarry Smith   PetscScalar          *array;
9121e07b27eSBarry Smith   const PetscScalar    *x_array;
9131e07b27eSBarry Smith   PC_Telescope_DMDACtx *ctx;
9141e07b27eSBarry Smith 
9151e07b27eSBarry Smith   ctx = (PC_Telescope_DMDACtx*)sred->dm_ctx;
9161e07b27eSBarry Smith   xtmp    = sred->xtmp;
9171e07b27eSBarry Smith   scatter = sred->scatter;
9181e07b27eSBarry Smith   xred    = sred->xred;
9191e07b27eSBarry Smith   yred    = sred->yred;
9201e07b27eSBarry Smith   perm    = ctx->permutation;
9211e07b27eSBarry Smith   xp      = ctx->xp;
9221e07b27eSBarry Smith 
9231e07b27eSBarry Smith   PetscFunctionBegin;
924bf00f589SPatrick Sanan   ierr = PetscCitationsRegister(citation,&cited);CHKERRQ(ierr);
92514c9fce5SDave May 
9261e07b27eSBarry Smith   /* permute vector into ordering associated with re-partitioned dmda */
9271e07b27eSBarry Smith   ierr = MatMultTranspose(perm,x,xp);CHKERRQ(ierr);
9281e07b27eSBarry Smith 
9291e07b27eSBarry Smith   /* pull in vector x->xtmp */
9301e07b27eSBarry Smith   ierr = VecScatterBegin(scatter,xp,xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9311e07b27eSBarry Smith   ierr = VecScatterEnd(scatter,xp,xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
9321e07b27eSBarry Smith 
9331e07b27eSBarry Smith   /* copy vector entires into xred */
9341e07b27eSBarry Smith   ierr = VecGetArrayRead(xtmp,&x_array);CHKERRQ(ierr);
9351e07b27eSBarry Smith   if (xred) {
9361e07b27eSBarry Smith     PetscScalar *LA_xred;
9371e07b27eSBarry Smith     ierr = VecGetOwnershipRange(xred,&st,&ed);CHKERRQ(ierr);
9381e07b27eSBarry Smith 
9391e07b27eSBarry Smith     ierr = VecGetArray(xred,&LA_xred);CHKERRQ(ierr);
9401e07b27eSBarry Smith     for (i=0; i<ed-st; i++) {
9411e07b27eSBarry Smith       LA_xred[i] = x_array[i];
9421e07b27eSBarry Smith     }
9431e07b27eSBarry Smith     ierr = VecRestoreArray(xred,&LA_xred);CHKERRQ(ierr);
9441e07b27eSBarry Smith   }
9451e07b27eSBarry Smith   ierr = VecRestoreArrayRead(xtmp,&x_array);CHKERRQ(ierr);
9461e07b27eSBarry Smith 
9471e07b27eSBarry Smith   /* solve */
94857f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
9491e07b27eSBarry Smith     ierr = KSPSolve(sred->ksp,xred,yred);CHKERRQ(ierr);
950c0decd05SBarry Smith     ierr = KSPCheckSolve(sred->ksp,pc,yred);CHKERRQ(ierr);
9511e07b27eSBarry Smith   }
9521e07b27eSBarry Smith 
9531e07b27eSBarry Smith   /* return vector */
9541e07b27eSBarry Smith   ierr = VecGetArray(xtmp,&array);CHKERRQ(ierr);
9551e07b27eSBarry Smith   if (yred) {
9561e07b27eSBarry Smith     const PetscScalar *LA_yred;
9571e07b27eSBarry Smith     ierr = VecGetOwnershipRange(yred,&st,&ed);CHKERRQ(ierr);
9581e07b27eSBarry Smith     ierr = VecGetArrayRead(yred,&LA_yred);CHKERRQ(ierr);
9591e07b27eSBarry Smith     for (i=0; i<ed-st; i++) {
9601e07b27eSBarry Smith       array[i] = LA_yred[i];
9611e07b27eSBarry Smith     }
9621e07b27eSBarry Smith     ierr = VecRestoreArrayRead(yred,&LA_yred);CHKERRQ(ierr);
9631e07b27eSBarry Smith   }
9641e07b27eSBarry Smith   ierr = VecRestoreArray(xtmp,&array);CHKERRQ(ierr);
9651e07b27eSBarry Smith   ierr = VecScatterBegin(scatter,xtmp,xp,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
9661e07b27eSBarry Smith   ierr = VecScatterEnd(scatter,xtmp,xp,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
9671e07b27eSBarry Smith   ierr = MatMult(perm,xp,y);CHKERRQ(ierr);
9681e07b27eSBarry Smith   PetscFunctionReturn(0);
9691e07b27eSBarry Smith }
9701e07b27eSBarry Smith 
971f650675bSDave May PetscErrorCode PCApplyRichardson_Telescope_dmda(PC pc,Vec x,Vec y,Vec w,PetscReal rtol,PetscReal abstol, PetscReal dtol,PetscInt its,PetscBool zeroguess,PetscInt *outits,PCRichardsonConvergedReason *reason)
972f650675bSDave May {
973f650675bSDave May   PC_Telescope         sred = (PC_Telescope)pc->data;
974f650675bSDave May   PetscErrorCode       ierr;
975f650675bSDave May   Mat                  perm;
976a1d91a28SDave May   Vec                  xtmp,xp,yred;
977f650675bSDave May   PetscInt             i,st,ed;
978f650675bSDave May   VecScatter           scatter;
979f650675bSDave May   const PetscScalar    *x_array;
980c41e779fSDave May   PetscBool            default_init_guess_value = PETSC_FALSE;
981f650675bSDave May   PC_Telescope_DMDACtx *ctx;
982f650675bSDave May 
98357f12427SDave May   PetscFunctionBegin;
984f650675bSDave May   ctx = (PC_Telescope_DMDACtx*)sred->dm_ctx;
985f650675bSDave May   xtmp    = sred->xtmp;
986f650675bSDave May   scatter = sred->scatter;
987f650675bSDave May   yred    = sred->yred;
988f650675bSDave May   perm    = ctx->permutation;
989f650675bSDave May   xp      = ctx->xp;
990f650675bSDave May 
991f650675bSDave May   if (its > 1) SETERRQ(PetscObjectComm((PetscObject)pc),PETSC_ERR_SUP,"PCApplyRichardson_Telescope_dmda only supports max_it = 1");
992f650675bSDave May   *reason = (PCRichardsonConvergedReason)0;
993f650675bSDave May 
994f650675bSDave May   if (!zeroguess) {
995f650675bSDave May     ierr = PetscInfo(pc,"PCTelescopeDMDA: Scattering y for non-zero-initial guess\n");CHKERRQ(ierr);
996f650675bSDave May     /* permute vector into ordering associated with re-partitioned dmda */
997f650675bSDave May     ierr = MatMultTranspose(perm,y,xp);CHKERRQ(ierr);
998f650675bSDave May 
999f650675bSDave May     /* pull in vector x->xtmp */
1000f650675bSDave May     ierr = VecScatterBegin(scatter,xp,xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1001f650675bSDave May     ierr = VecScatterEnd(scatter,xp,xtmp,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1002f650675bSDave May 
1003f650675bSDave May     /* copy vector entires into xred */
1004f650675bSDave May     ierr = VecGetArrayRead(xtmp,&x_array);CHKERRQ(ierr);
1005f650675bSDave May     if (yred) {
1006f650675bSDave May       PetscScalar *LA_yred;
1007f650675bSDave May       ierr = VecGetOwnershipRange(yred,&st,&ed);CHKERRQ(ierr);
1008f650675bSDave May       ierr = VecGetArray(yred,&LA_yred);CHKERRQ(ierr);
1009f650675bSDave May       for (i=0; i<ed-st; i++) {
1010f650675bSDave May         LA_yred[i] = x_array[i];
1011f650675bSDave May       }
1012f650675bSDave May       ierr = VecRestoreArray(yred,&LA_yred);CHKERRQ(ierr);
1013f650675bSDave May     }
1014f650675bSDave May     ierr = VecRestoreArrayRead(xtmp,&x_array);CHKERRQ(ierr);
1015f650675bSDave May   }
1016f650675bSDave May 
101757f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
1018f650675bSDave May     ierr = KSPGetInitialGuessNonzero(sred->ksp,&default_init_guess_value);CHKERRQ(ierr);
1019f650675bSDave May     if (!zeroguess) ierr = KSPSetInitialGuessNonzero(sred->ksp,PETSC_TRUE);CHKERRQ(ierr);
1020f650675bSDave May   }
1021f650675bSDave May 
1022f650675bSDave May   ierr = PCApply_Telescope_dmda(pc,x,y);CHKERRQ(ierr);
1023f650675bSDave May 
102457f12427SDave May   if (PCTelescope_isActiveRank(sred)) {
1025f650675bSDave May     ierr = KSPSetInitialGuessNonzero(sred->ksp,default_init_guess_value);CHKERRQ(ierr);
1026f650675bSDave May   }
1027f650675bSDave May 
1028f650675bSDave May   if (!*reason) *reason = PCRICHARDSON_CONVERGED_ITS;
1029f650675bSDave May   *outits = 1;
1030f650675bSDave May   PetscFunctionReturn(0);
1031f650675bSDave May }
1032f650675bSDave May 
10331e07b27eSBarry Smith PetscErrorCode PCReset_Telescope_dmda(PC pc)
10341e07b27eSBarry Smith {
10351e07b27eSBarry Smith   PetscErrorCode       ierr;
10361e07b27eSBarry Smith   PC_Telescope         sred = (PC_Telescope)pc->data;
10371e07b27eSBarry Smith   PC_Telescope_DMDACtx *ctx;
10381e07b27eSBarry Smith 
10391e07b27eSBarry Smith   PetscFunctionBegin;
10401e07b27eSBarry Smith   ctx = (PC_Telescope_DMDACtx*)sred->dm_ctx;
10411e07b27eSBarry Smith   ierr = VecDestroy(&ctx->xp);CHKERRQ(ierr);
10421e07b27eSBarry Smith   ierr = MatDestroy(&ctx->permutation);CHKERRQ(ierr);
10431e07b27eSBarry Smith   ierr = DMDestroy(&ctx->dmrepart);CHKERRQ(ierr);
1044071fcb05SBarry Smith   ierr = PetscFree3(ctx->range_i_re,ctx->range_j_re,ctx->range_k_re);CHKERRQ(ierr);
1045071fcb05SBarry Smith   ierr = PetscFree3(ctx->start_i_re,ctx->start_j_re,ctx->start_k_re);CHKERRQ(ierr);
10461e07b27eSBarry Smith   PetscFunctionReturn(0);
10471e07b27eSBarry Smith }
10481e07b27eSBarry Smith 
10498ef9ca65SPatrick Sanan PetscErrorCode DMView_DA_Short_3d(DM dm,PetscViewer v)
10501e07b27eSBarry Smith {
10511e07b27eSBarry Smith   PetscInt       M,N,P,m,n,p,ndof,nsw;
10521e07b27eSBarry Smith   MPI_Comm       comm;
10531e07b27eSBarry Smith   PetscMPIInt    size;
10541e07b27eSBarry Smith   const char*    prefix;
10551e07b27eSBarry Smith   PetscErrorCode ierr;
10561e07b27eSBarry Smith 
10571e07b27eSBarry Smith   PetscFunctionBegin;
10581e07b27eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
10591e07b27eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
10601e07b27eSBarry Smith   ierr = DMGetOptionsPrefix(dm,&prefix);CHKERRQ(ierr);
10611e07b27eSBarry Smith   ierr = DMDAGetInfo(dm,NULL,&M,&N,&P,&m,&n,&p,&ndof,&nsw,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
10621e07b27eSBarry Smith   if (prefix) {ierr = PetscViewerASCIIPrintf(v,"DMDA Object:    (%s)    %d MPI processes\n",prefix,size);CHKERRQ(ierr);}
10631e07b27eSBarry Smith   else {ierr = PetscViewerASCIIPrintf(v,"DMDA Object:    %d MPI processes\n",size);CHKERRQ(ierr);}
10641e07b27eSBarry Smith   ierr = PetscViewerASCIIPrintf(v,"  M %D N %D P %D m %D n %D p %D dof %D overlap %D\n",M,N,P,m,n,p,ndof,nsw);CHKERRQ(ierr);
10651e07b27eSBarry Smith   PetscFunctionReturn(0);
10661e07b27eSBarry Smith }
10671e07b27eSBarry Smith 
10688ef9ca65SPatrick Sanan PetscErrorCode DMView_DA_Short_2d(DM dm,PetscViewer v)
10691e07b27eSBarry Smith {
10701e07b27eSBarry Smith   PetscInt       M,N,m,n,ndof,nsw;
10711e07b27eSBarry Smith   MPI_Comm       comm;
10721e07b27eSBarry Smith   PetscMPIInt    size;
10731e07b27eSBarry Smith   const char*    prefix;
10741e07b27eSBarry Smith   PetscErrorCode ierr;
10751e07b27eSBarry Smith 
10761e07b27eSBarry Smith   PetscFunctionBegin;
10771e07b27eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr);
10781e07b27eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
10791e07b27eSBarry Smith   ierr = DMGetOptionsPrefix(dm,&prefix);CHKERRQ(ierr);
10801e07b27eSBarry Smith   ierr = DMDAGetInfo(dm,NULL,&M,&N,NULL,&m,&n,NULL,&ndof,&nsw,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
10811e07b27eSBarry Smith   if (prefix) {PetscViewerASCIIPrintf(v,"DMDA Object:    (%s)    %d MPI processes\n",prefix,size);CHKERRQ(ierr);}
10821e07b27eSBarry Smith   else {ierr = PetscViewerASCIIPrintf(v,"DMDA Object:    %d MPI processes\n",size);CHKERRQ(ierr);}
10831e07b27eSBarry Smith   ierr = PetscViewerASCIIPrintf(v,"  M %D N %D m %D n %D dof %D overlap %D\n",M,N,m,n,ndof,nsw);CHKERRQ(ierr);
10841e07b27eSBarry Smith   PetscFunctionReturn(0);
10851e07b27eSBarry Smith }
10861e07b27eSBarry Smith 
10878ef9ca65SPatrick Sanan PetscErrorCode DMView_DA_Short(DM dm,PetscViewer v)
10881e07b27eSBarry Smith {
10891e07b27eSBarry Smith   PetscErrorCode ierr;
10901e07b27eSBarry Smith   PetscInt       dim;
10911e07b27eSBarry Smith 
10921e07b27eSBarry Smith   PetscFunctionBegin;
10931e07b27eSBarry Smith   ierr = DMDAGetInfo(dm,&dim,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
10941e07b27eSBarry Smith   switch (dim) {
10958ef9ca65SPatrick Sanan   case 2: ierr = DMView_DA_Short_2d(dm,v);CHKERRQ(ierr);
10961e07b27eSBarry Smith     break;
10978ef9ca65SPatrick Sanan   case 3: ierr = DMView_DA_Short_3d(dm,v);CHKERRQ(ierr);
10981e07b27eSBarry Smith     break;
10991e07b27eSBarry Smith   }
11001e07b27eSBarry Smith   PetscFunctionReturn(0);
11011e07b27eSBarry Smith }
1102