1*f1be3500SJunchao Zhang #include <../src/ksp/pc/impls/vpbjacobi/vpbjacobi.h> 20da83c2eSBarry Smith 30da83c2eSBarry Smith static PetscErrorCode PCApply_VPBJacobi(PC pc,Vec x,Vec y) 40da83c2eSBarry Smith { 50da83c2eSBarry Smith PC_VPBJacobi *jac = (PC_VPBJacobi*)pc->data; 60da83c2eSBarry Smith PetscInt i,ncnt = 0; 70da83c2eSBarry Smith const MatScalar *diag = jac->diag; 80da83c2eSBarry Smith PetscInt ib,jb,bs; 90da83c2eSBarry Smith const PetscScalar *xx; 100da83c2eSBarry Smith PetscScalar *yy,x0,x1,x2,x3,x4,x5,x6; 110da83c2eSBarry Smith PetscInt nblocks; 120da83c2eSBarry Smith const PetscInt *bsizes; 130da83c2eSBarry Smith 140da83c2eSBarry Smith PetscFunctionBegin; 159566063dSJacob Faibussowitsch PetscCall(MatGetVariableBlockSizes(pc->pmat,&nblocks,&bsizes)); 169566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x,&xx)); 179566063dSJacob Faibussowitsch PetscCall(VecGetArray(y,&yy)); 180da83c2eSBarry Smith for (i=0; i<nblocks; i++) { 190da83c2eSBarry Smith bs = bsizes[i]; 200da83c2eSBarry Smith switch (bs) { 210da83c2eSBarry Smith case 1: 220da83c2eSBarry Smith yy[ncnt] = *diag*xx[ncnt]; 230da83c2eSBarry Smith break; 240da83c2eSBarry Smith case 2: 250da83c2eSBarry Smith x0 = xx[ncnt]; x1 = xx[ncnt+1]; 260da83c2eSBarry Smith yy[ncnt] = diag[0]*x0 + diag[2]*x1; 270da83c2eSBarry Smith yy[ncnt+1] = diag[1]*x0 + diag[3]*x1; 280da83c2eSBarry Smith break; 290da83c2eSBarry Smith case 3: 300da83c2eSBarry Smith x0 = xx[ncnt]; x1 = xx[ncnt+1]; x2 = xx[ncnt+2]; 310da83c2eSBarry Smith yy[ncnt] = diag[0]*x0 + diag[3]*x1 + diag[6]*x2; 320da83c2eSBarry Smith yy[ncnt+1] = diag[1]*x0 + diag[4]*x1 + diag[7]*x2; 330da83c2eSBarry Smith yy[ncnt+2] = diag[2]*x0 + diag[5]*x1 + diag[8]*x2; 340da83c2eSBarry Smith break; 350da83c2eSBarry Smith case 4: 360da83c2eSBarry Smith x0 = xx[ncnt]; x1 = xx[ncnt+1]; x2 = xx[ncnt+2]; x3 = xx[ncnt+3]; 370da83c2eSBarry Smith yy[ncnt] = diag[0]*x0 + diag[4]*x1 + diag[8]*x2 + diag[12]*x3; 380da83c2eSBarry Smith yy[ncnt+1] = diag[1]*x0 + diag[5]*x1 + diag[9]*x2 + diag[13]*x3; 390da83c2eSBarry Smith yy[ncnt+2] = diag[2]*x0 + diag[6]*x1 + diag[10]*x2 + diag[14]*x3; 400da83c2eSBarry Smith yy[ncnt+3] = diag[3]*x0 + diag[7]*x1 + diag[11]*x2 + diag[15]*x3; 410da83c2eSBarry Smith break; 420da83c2eSBarry Smith case 5: 430da83c2eSBarry Smith x0 = xx[ncnt]; x1 = xx[ncnt+1]; x2 = xx[ncnt+2]; x3 = xx[ncnt+3]; x4 = xx[ncnt+4]; 440da83c2eSBarry Smith yy[ncnt] = diag[0]*x0 + diag[5]*x1 + diag[10]*x2 + diag[15]*x3 + diag[20]*x4; 450da83c2eSBarry Smith yy[ncnt+1] = diag[1]*x0 + diag[6]*x1 + diag[11]*x2 + diag[16]*x3 + diag[21]*x4; 460da83c2eSBarry Smith yy[ncnt+2] = diag[2]*x0 + diag[7]*x1 + diag[12]*x2 + diag[17]*x3 + diag[22]*x4; 470da83c2eSBarry Smith yy[ncnt+3] = diag[3]*x0 + diag[8]*x1 + diag[13]*x2 + diag[18]*x3 + diag[23]*x4; 480da83c2eSBarry Smith yy[ncnt+4] = diag[4]*x0 + diag[9]*x1 + diag[14]*x2 + diag[19]*x3 + diag[24]*x4; 490da83c2eSBarry Smith break; 500da83c2eSBarry Smith case 6: 510da83c2eSBarry Smith x0 = xx[ncnt]; x1 = xx[ncnt+1]; x2 = xx[ncnt+2]; x3 = xx[ncnt+3]; x4 = xx[ncnt+4]; x5 = xx[ncnt+5]; 520da83c2eSBarry Smith yy[ncnt] = diag[0]*x0 + diag[6]*x1 + diag[12]*x2 + diag[18]*x3 + diag[24]*x4 + diag[30]*x5; 530da83c2eSBarry Smith yy[ncnt+1] = diag[1]*x0 + diag[7]*x1 + diag[13]*x2 + diag[19]*x3 + diag[25]*x4 + diag[31]*x5; 540da83c2eSBarry Smith yy[ncnt+2] = diag[2]*x0 + diag[8]*x1 + diag[14]*x2 + diag[20]*x3 + diag[26]*x4 + diag[32]*x5; 550da83c2eSBarry Smith yy[ncnt+3] = diag[3]*x0 + diag[9]*x1 + diag[15]*x2 + diag[21]*x3 + diag[27]*x4 + diag[33]*x5; 560da83c2eSBarry Smith yy[ncnt+4] = diag[4]*x0 + diag[10]*x1 + diag[16]*x2 + diag[22]*x3 + diag[28]*x4 + diag[34]*x5; 570da83c2eSBarry Smith yy[ncnt+5] = diag[5]*x0 + diag[11]*x1 + diag[17]*x2 + diag[23]*x3 + diag[29]*x4 + diag[35]*x5; 580da83c2eSBarry Smith break; 590da83c2eSBarry Smith case 7: 600da83c2eSBarry Smith x0 = xx[ncnt]; x1 = xx[ncnt+1]; x2 = xx[ncnt+2]; x3 = xx[ncnt+3]; x4 = xx[ncnt+4]; x5 = xx[ncnt+5]; x6 = xx[ncnt+6]; 610da83c2eSBarry Smith yy[ncnt] = diag[0]*x0 + diag[7]*x1 + diag[14]*x2 + diag[21]*x3 + diag[28]*x4 + diag[35]*x5 + diag[42]*x6; 620da83c2eSBarry Smith yy[ncnt+1] = diag[1]*x0 + diag[8]*x1 + diag[15]*x2 + diag[22]*x3 + diag[29]*x4 + diag[36]*x5 + diag[43]*x6; 630da83c2eSBarry Smith yy[ncnt+2] = diag[2]*x0 + diag[9]*x1 + diag[16]*x2 + diag[23]*x3 + diag[30]*x4 + diag[37]*x5 + diag[44]*x6; 640da83c2eSBarry Smith yy[ncnt+3] = diag[3]*x0 + diag[10]*x1 + diag[17]*x2 + diag[24]*x3 + diag[31]*x4 + diag[38]*x5 + diag[45]*x6; 650da83c2eSBarry Smith yy[ncnt+4] = diag[4]*x0 + diag[11]*x1 + diag[18]*x2 + diag[25]*x3 + diag[32]*x4 + diag[39]*x5 + diag[46]*x6; 660da83c2eSBarry Smith yy[ncnt+5] = diag[5]*x0 + diag[12]*x1 + diag[19]*x2 + diag[26]*x3 + diag[33]*x4 + diag[40]*x5 + diag[47]*x6; 670da83c2eSBarry Smith yy[ncnt+6] = diag[6]*x0 + diag[13]*x1 + diag[20]*x2 + diag[27]*x3 + diag[34]*x4 + diag[41]*x5 + diag[48]*x6; 680da83c2eSBarry Smith break; 690da83c2eSBarry Smith default: 700da83c2eSBarry Smith for (ib=0; ib<bs; ib++) { 710da83c2eSBarry Smith PetscScalar rowsum = 0; 720da83c2eSBarry Smith for (jb=0; jb<bs; jb++) { 730da83c2eSBarry Smith rowsum += diag[ib+jb*bs] * xx[ncnt+jb]; 740da83c2eSBarry Smith } 750da83c2eSBarry Smith yy[ncnt+ib] = rowsum; 760da83c2eSBarry Smith } 770da83c2eSBarry Smith } 780da83c2eSBarry Smith ncnt += bsizes[i]; 790da83c2eSBarry Smith diag += bsizes[i]*bsizes[i]; 800da83c2eSBarry Smith } 819566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x,&xx)); 829566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(y,&yy)); 830da83c2eSBarry Smith PetscFunctionReturn(0); 840da83c2eSBarry Smith } 850da83c2eSBarry Smith 86*f1be3500SJunchao Zhang PETSC_INTERN PetscErrorCode PCSetUp_VPBJacobi_Host(PC pc) 870da83c2eSBarry Smith { 880da83c2eSBarry Smith PC_VPBJacobi *jac = (PC_VPBJacobi*)pc->data; 890da83c2eSBarry Smith Mat A = pc->pmat; 900da83c2eSBarry Smith MatFactorError err; 910da83c2eSBarry Smith PetscInt i,nsize = 0,nlocal; 920da83c2eSBarry Smith PetscInt nblocks; 930da83c2eSBarry Smith const PetscInt *bsizes; 940da83c2eSBarry Smith 950da83c2eSBarry Smith PetscFunctionBegin; 969566063dSJacob Faibussowitsch PetscCall(MatGetVariableBlockSizes(pc->pmat,&nblocks,&bsizes)); 979566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(pc->pmat,&nlocal,NULL)); 9808401ef6SPierre Jolivet PetscCheck(!nlocal || nblocks,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call MatSetVariableBlockSizes() before using PCVPBJACOBI"); 990da83c2eSBarry Smith if (!jac->diag) { 1000da83c2eSBarry Smith for (i=0; i<nblocks; i++) nsize += bsizes[i]*bsizes[i]; 1019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsize,&jac->diag)); 1020da83c2eSBarry Smith } 1039566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(A,nblocks,bsizes,jac->diag)); 1049566063dSJacob Faibussowitsch PetscCall(MatFactorGetError(A,&err)); 1050da83c2eSBarry Smith if (err) pc->failedreason = (PCFailedReason)err; 1060da83c2eSBarry Smith pc->ops->apply = PCApply_VPBJacobi; 1070da83c2eSBarry Smith PetscFunctionReturn(0); 1080da83c2eSBarry Smith } 1098a9c020eSBarry Smith 110*f1be3500SJunchao Zhang static PetscErrorCode PCSetUp_VPBJacobi(PC pc) 111*f1be3500SJunchao Zhang { 112*f1be3500SJunchao Zhang PetscFunctionBegin; 113*f1be3500SJunchao Zhang /* In PCCreate_VPBJacobi() pmat might have not been set, so we wait to the last minute to do the dispatch */ 114*f1be3500SJunchao Zhang #if defined(PETSC_HAVE_CUDA) 115*f1be3500SJunchao Zhang PetscBool isCuda; 116*f1be3500SJunchao Zhang PetscCall(PetscObjectTypeCompareAny((PetscObject)pc->pmat,&isCuda,MATSEQAIJCUSPARSE,MATMPIAIJCUSPARSE,"")); 117*f1be3500SJunchao Zhang #endif 118*f1be3500SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS_KERNELS) 119*f1be3500SJunchao Zhang PetscBool isKok; 120*f1be3500SJunchao Zhang PetscCall(PetscObjectTypeCompareAny((PetscObject)pc->pmat,&isKok,MATSEQAIJKOKKOS,MATMPIAIJKOKKOS,"")); 121*f1be3500SJunchao Zhang #endif 122*f1be3500SJunchao Zhang 123*f1be3500SJunchao Zhang #if defined(PETSC_HAVE_CUDA) 124*f1be3500SJunchao Zhang if (isCuda) PetscCall(PCSetUp_VPBJacobi_CUDA(pc)); else 125*f1be3500SJunchao Zhang #endif 126*f1be3500SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS_KERNELS) 127*f1be3500SJunchao Zhang if (isKok) PetscCall(PCSetUp_VPBJacobi_Kokkos(pc)); else 128*f1be3500SJunchao Zhang #endif 129*f1be3500SJunchao Zhang {PetscCall(PCSetUp_VPBJacobi_Host(pc));} 130*f1be3500SJunchao Zhang PetscFunctionReturn(0); 131*f1be3500SJunchao Zhang } 132*f1be3500SJunchao Zhang 133*f1be3500SJunchao Zhang PETSC_INTERN PetscErrorCode PCDestroy_VPBJacobi(PC pc) 1340da83c2eSBarry Smith { 1350da83c2eSBarry Smith PC_VPBJacobi *jac = (PC_VPBJacobi*)pc->data; 1360da83c2eSBarry Smith 1370da83c2eSBarry Smith PetscFunctionBegin; 1380da83c2eSBarry Smith /* 1390da83c2eSBarry Smith Free the private data structure that was hanging off the PC 1400da83c2eSBarry Smith */ 1419566063dSJacob Faibussowitsch PetscCall(PetscFree(jac->diag)); 1429566063dSJacob Faibussowitsch PetscCall(PetscFree(pc->data)); 1430da83c2eSBarry Smith PetscFunctionReturn(0); 1440da83c2eSBarry Smith } 1450da83c2eSBarry Smith 1460da83c2eSBarry Smith /*MC 1470da83c2eSBarry Smith PCVPBJACOBI - Variable size point block Jacobi preconditioner 1480da83c2eSBarry Smith 1490da83c2eSBarry Smith Notes: 1500da83c2eSBarry Smith See PCJACOBI for point Jacobi preconditioning, PCPBJACOBI for fixed point block size, and PCBJACOBI for large size blocks 1510da83c2eSBarry Smith 1520da83c2eSBarry Smith This works for AIJ matrices 1530da83c2eSBarry Smith 1540da83c2eSBarry Smith Uses dense LU factorization with partial pivoting to invert the blocks; if a zero pivot 1550da83c2eSBarry Smith is detected a PETSc error is generated. 1560da83c2eSBarry Smith 1570da83c2eSBarry Smith One must call MatSetVariableBlockSizes() to use this preconditioner 15890dfcc32SBarry Smith 1590da83c2eSBarry Smith Developer Notes: 1600da83c2eSBarry Smith This should support the PCSetErrorIfFailure() flag set to PETSC_TRUE to allow 1610da83c2eSBarry Smith the factorization to continue even after a zero pivot is found resulting in a Nan and hence 1620da83c2eSBarry Smith terminating KSP with a KSP_DIVERGED_NANORIF allowing 1630da83c2eSBarry Smith a nonlinear solver/ODE integrator to recover without stopping the program as currently happens. 1640da83c2eSBarry Smith 1650da83c2eSBarry Smith Perhaps should provide an option that allows generation of a valid preconditioner 1660da83c2eSBarry Smith even if a block is singular as the PCJACOBI does. 1670da83c2eSBarry Smith 1680da83c2eSBarry Smith Level: beginner 1690da83c2eSBarry Smith 170db781477SPatrick Sanan .seealso: `MatSetVariableBlockSizes()`, `PCCreate()`, `PCSetType()`, `PCType`, `PC`, `PCJACOBI`, `PCPBJACOBI`, `PCBJACOBI` 1710da83c2eSBarry Smith 1720da83c2eSBarry Smith M*/ 1730da83c2eSBarry Smith 1740da83c2eSBarry Smith PETSC_EXTERN PetscErrorCode PCCreate_VPBJacobi(PC pc) 1750da83c2eSBarry Smith { 1760da83c2eSBarry Smith PC_VPBJacobi *jac; 1770da83c2eSBarry Smith 1780da83c2eSBarry Smith PetscFunctionBegin; 1790da83c2eSBarry Smith /* 1800da83c2eSBarry Smith Creates the private data structure for this preconditioner and 1810da83c2eSBarry Smith attach it to the PC object. 1820da83c2eSBarry Smith */ 1839566063dSJacob Faibussowitsch PetscCall(PetscNewLog(pc,&jac)); 1840da83c2eSBarry Smith pc->data = (void*)jac; 1850da83c2eSBarry Smith 1860da83c2eSBarry Smith /* 1870da83c2eSBarry Smith Initialize the pointers to vectors to ZERO; these will be used to store 1880da83c2eSBarry Smith diagonal entries of the matrix for fast preconditioner application. 1890da83c2eSBarry Smith */ 1900da83c2eSBarry Smith jac->diag = NULL; 1910da83c2eSBarry Smith 1920da83c2eSBarry Smith /* 1930da83c2eSBarry Smith Set the pointers for the functions that are provided above. 1940da83c2eSBarry Smith Now when the user-level routines (such as PCApply(), PCDestroy(), etc.) 1950da83c2eSBarry Smith are called, they will automatically call these functions. Note we 1960da83c2eSBarry Smith choose not to provide a couple of these functions since they are 1970da83c2eSBarry Smith not needed. 1980da83c2eSBarry Smith */ 1990da83c2eSBarry Smith pc->ops->apply = PCApply_VPBJacobi; 2000a545947SLisandro Dalcin pc->ops->applytranspose = NULL; 2010da83c2eSBarry Smith pc->ops->setup = PCSetUp_VPBJacobi; 2020da83c2eSBarry Smith pc->ops->destroy = PCDestroy_VPBJacobi; 2030a545947SLisandro Dalcin pc->ops->setfromoptions = NULL; 2040a545947SLisandro Dalcin pc->ops->applyrichardson = NULL; 2050a545947SLisandro Dalcin pc->ops->applysymmetricleft = NULL; 2060a545947SLisandro Dalcin pc->ops->applysymmetricright = NULL; 2070da83c2eSBarry Smith PetscFunctionReturn(0); 2080da83c2eSBarry Smith } 209