111d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 2*076ba34aSJunchao Zhang #include <petscsf.h> 38c3ff71bSJunchao Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 4a587d139SMark #include <../src/mat/impls/aij/seq/kokkos/aijkokkosimpl.hpp> 5*076ba34aSJunchao Zhang #include <KokkosSparse_spadd.hpp> 611d22bbfSJunchao Zhang 78c3ff71bSJunchao Zhang PetscErrorCode MatAssemblyEnd_MPIAIJKokkos(Mat A,MatAssemblyType mode) 88c3ff71bSJunchao Zhang { 98c3ff71bSJunchao Zhang PetscErrorCode ierr; 108c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)A->data; 11a587d139SMark Mat_SeqAIJKokkos *aijkok = mpiaij->A->spptr ? static_cast<Mat_SeqAIJKokkos*>(mpiaij->A->spptr) : NULL; 128c3ff71bSJunchao Zhang 138c3ff71bSJunchao Zhang PetscFunctionBegin; 148c3ff71bSJunchao Zhang ierr = MatAssemblyEnd_MPIAIJ(A,mode);CHKERRQ(ierr); 15a587d139SMark if (aijkok && aijkok->device_mat_d.data()) { 16a587d139SMark A->offloadmask = PETSC_OFFLOAD_GPU; // in GPU mode, no going back. MatSetValues checks this 17a587d139SMark } 18a587d139SMark 198c3ff71bSJunchao Zhang PetscFunctionReturn(0); 208c3ff71bSJunchao Zhang } 218c3ff71bSJunchao Zhang 228c3ff71bSJunchao Zhang PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJKokkos(Mat mat,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 238c3ff71bSJunchao Zhang { 248c3ff71bSJunchao Zhang PetscErrorCode ierr; 258c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 268c3ff71bSJunchao Zhang 278c3ff71bSJunchao Zhang PetscFunctionBegin; 288c3ff71bSJunchao Zhang ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 298c3ff71bSJunchao Zhang ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 306a29ce69SStefano Zampini #if defined(PETSC_USE_DEBUG) 318c3ff71bSJunchao Zhang if (d_nnz) { 326a29ce69SStefano Zampini PetscInt i; 338c3ff71bSJunchao Zhang for (i=0; i<mat->rmap->n; i++) { 348c3ff71bSJunchao Zhang if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %D value %D",i,d_nnz[i]); 358c3ff71bSJunchao Zhang } 368c3ff71bSJunchao Zhang } 378c3ff71bSJunchao Zhang if (o_nnz) { 386a29ce69SStefano Zampini PetscInt i; 398c3ff71bSJunchao Zhang for (i=0; i<mat->rmap->n; i++) { 408c3ff71bSJunchao Zhang if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %D value %D",i,o_nnz[i]); 418c3ff71bSJunchao Zhang } 428c3ff71bSJunchao Zhang } 436a29ce69SStefano Zampini #endif 446a29ce69SStefano Zampini #if defined(PETSC_USE_CTABLE) 456a29ce69SStefano Zampini ierr = PetscTableDestroy(&mpiaij->colmap);CHKERRQ(ierr); 466a29ce69SStefano Zampini #else 476a29ce69SStefano Zampini ierr = PetscFree(mpiaij->colmap);CHKERRQ(ierr); 486a29ce69SStefano Zampini #endif 496a29ce69SStefano Zampini ierr = PetscFree(mpiaij->garray);CHKERRQ(ierr); 506a29ce69SStefano Zampini ierr = VecDestroy(&mpiaij->lvec);CHKERRQ(ierr); 516a29ce69SStefano Zampini ierr = VecScatterDestroy(&mpiaij->Mvctx);CHKERRQ(ierr); 526a29ce69SStefano Zampini /* Because the B will have been resized we simply destroy it and create a new one each time */ 536a29ce69SStefano Zampini ierr = MatDestroy(&mpiaij->B);CHKERRQ(ierr); 546a29ce69SStefano Zampini 556a29ce69SStefano Zampini if (!mpiaij->A) { 568c3ff71bSJunchao Zhang ierr = MatCreate(PETSC_COMM_SELF,&mpiaij->A);CHKERRQ(ierr); 578c3ff71bSJunchao Zhang ierr = MatSetSizes(mpiaij->A,mat->rmap->n,mat->cmap->n,mat->rmap->n,mat->cmap->n);CHKERRQ(ierr); 588c3ff71bSJunchao Zhang ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)mpiaij->A);CHKERRQ(ierr); 596a29ce69SStefano Zampini } 606a29ce69SStefano Zampini if (!mpiaij->B) { 616a29ce69SStefano Zampini PetscMPIInt size; 6255b25c41SPierre Jolivet ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRMPI(ierr); 638c3ff71bSJunchao Zhang ierr = MatCreate(PETSC_COMM_SELF,&mpiaij->B);CHKERRQ(ierr); 646a29ce69SStefano Zampini ierr = MatSetSizes(mpiaij->B,mat->rmap->n,size > 1 ? mat->cmap->N : 0,mat->rmap->n,size > 1 ? mat->cmap->N : 0);CHKERRQ(ierr); 658c3ff71bSJunchao Zhang ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)mpiaij->B);CHKERRQ(ierr); 668c3ff71bSJunchao Zhang } 676a29ce69SStefano Zampini ierr = MatSetType(mpiaij->A,MATSEQAIJKOKKOS);CHKERRQ(ierr); 686a29ce69SStefano Zampini ierr = MatSetType(mpiaij->B,MATSEQAIJKOKKOS);CHKERRQ(ierr); 698c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(mpiaij->A,d_nz,d_nnz);CHKERRQ(ierr); 708c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(mpiaij->B,o_nz,o_nnz);CHKERRQ(ierr); 718c3ff71bSJunchao Zhang mat->preallocated = PETSC_TRUE; 728c3ff71bSJunchao Zhang PetscFunctionReturn(0); 738c3ff71bSJunchao Zhang } 748c3ff71bSJunchao Zhang 758c3ff71bSJunchao Zhang PetscErrorCode MatMult_MPIAIJKokkos(Mat mat,Vec xx,Vec yy) 768c3ff71bSJunchao Zhang { 778c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 788c3ff71bSJunchao Zhang PetscErrorCode ierr; 798c3ff71bSJunchao Zhang PetscInt nt; 808c3ff71bSJunchao Zhang 818c3ff71bSJunchao Zhang PetscFunctionBegin; 828c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 838c3ff71bSJunchao Zhang if (nt != mat->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%D) and xx (%D)",mat->cmap->n,nt); 848c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 858c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->mult)(mpiaij->A,xx,yy);CHKERRQ(ierr); 868c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 878c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multadd)(mpiaij->B,mpiaij->lvec,yy,yy);CHKERRQ(ierr); 888c3ff71bSJunchao Zhang PetscFunctionReturn(0); 898c3ff71bSJunchao Zhang } 908c3ff71bSJunchao Zhang 918c3ff71bSJunchao Zhang PetscErrorCode MatMultAdd_MPIAIJKokkos(Mat mat,Vec xx,Vec yy,Vec zz) 928c3ff71bSJunchao Zhang { 938c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 948c3ff71bSJunchao Zhang PetscErrorCode ierr; 958c3ff71bSJunchao Zhang PetscInt nt; 968c3ff71bSJunchao Zhang 978c3ff71bSJunchao Zhang PetscFunctionBegin; 988c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 998c3ff71bSJunchao Zhang if (nt != mat->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%D) and xx (%D)",mat->cmap->n,nt); 1008c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1018c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->multadd)(mpiaij->A,xx,yy,zz);CHKERRQ(ierr); 1028c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1038c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multadd)(mpiaij->B,mpiaij->lvec,zz,zz);CHKERRQ(ierr); 1048c3ff71bSJunchao Zhang PetscFunctionReturn(0); 1058c3ff71bSJunchao Zhang } 1068c3ff71bSJunchao Zhang 1078c3ff71bSJunchao Zhang PetscErrorCode MatMultTranspose_MPIAIJKokkos(Mat mat,Vec xx,Vec yy) 1088c3ff71bSJunchao Zhang { 1098c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 1108c3ff71bSJunchao Zhang PetscErrorCode ierr; 1118c3ff71bSJunchao Zhang PetscInt nt; 1128c3ff71bSJunchao Zhang 1138c3ff71bSJunchao Zhang PetscFunctionBegin; 1148c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1158c3ff71bSJunchao Zhang if (nt != mat->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%D) and xx (%D)",mat->rmap->n,nt); 1168c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multtranspose)(mpiaij->B,xx,mpiaij->lvec);CHKERRQ(ierr); 1178c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->multtranspose)(mpiaij->A,xx,yy);CHKERRQ(ierr); 1188c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,mpiaij->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1198c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,mpiaij->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1208c3ff71bSJunchao Zhang PetscFunctionReturn(0); 1218c3ff71bSJunchao Zhang } 1228c3ff71bSJunchao Zhang 123*076ba34aSJunchao Zhang /* Merge the "A, B" matrices of mat into a matrix C. mat's type is MPIAIJKOKKOS. C's type is MATSEQAIJKOKKOS. 124*076ba34aSJunchao Zhang A is put before B. C's size would be A->rmap->n by (A->cmap->n + B->cmap->n). 125*076ba34aSJunchao Zhang C still uses local column ids. Their corresponding global column ids are returned in glob. 126*076ba34aSJunchao Zhang */ 127*076ba34aSJunchao Zhang PetscErrorCode MatMPIAIJGetLocalMatMerge_MPIAIJKokkos(Mat mat,MatReuse reuse,IS *glob,Mat *C) 128*076ba34aSJunchao Zhang { 129*076ba34aSJunchao Zhang Mat Ad,Ao; 130*076ba34aSJunchao Zhang const PetscInt *cmap; 131*076ba34aSJunchao Zhang PetscErrorCode ierr; 132*076ba34aSJunchao Zhang 133*076ba34aSJunchao Zhang PetscFunctionBegin; 134*076ba34aSJunchao Zhang ierr = MatMPIAIJGetSeqAIJ(mat,&Ad,&Ao,&cmap);CHKERRQ(ierr); 135*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosMergeMats(Ad,Ao,reuse,C);CHKERRQ(ierr); 136*076ba34aSJunchao Zhang if (glob) { 137*076ba34aSJunchao Zhang PetscInt cst, i, dn, on, *gidx; 138*076ba34aSJunchao Zhang ierr = MatGetLocalSize(Ad,NULL,&dn);CHKERRQ(ierr); 139*076ba34aSJunchao Zhang ierr = MatGetLocalSize(Ao,NULL,&on);CHKERRQ(ierr); 140*076ba34aSJunchao Zhang ierr = MatGetOwnershipRangeColumn(mat,&cst,NULL);CHKERRQ(ierr); 141*076ba34aSJunchao Zhang ierr = PetscMalloc1(dn+on,&gidx);CHKERRQ(ierr); 142*076ba34aSJunchao Zhang for (i=0; i<dn; i++) gidx[i] = cst + i; 143*076ba34aSJunchao Zhang for (i=0; i<on; i++) gidx[i+dn] = cmap[i]; 144*076ba34aSJunchao Zhang ierr = ISCreateGeneral(PetscObjectComm((PetscObject)Ad),dn+on,gidx,PETSC_OWN_POINTER,glob);CHKERRQ(ierr); 145*076ba34aSJunchao Zhang } 146*076ba34aSJunchao Zhang PetscFunctionReturn(0); 147*076ba34aSJunchao Zhang } 148*076ba34aSJunchao Zhang 149*076ba34aSJunchao Zhang /* Structs used in matrix product C=AB, C=A^tB and C=B^tAB */ 150*076ba34aSJunchao Zhang struct MatMatStruct { 151*076ba34aSJunchao Zhang MatRowMapKokkosView Cdstart; /* Used to split sequential matrix into petsc's A, B format */ 152*076ba34aSJunchao Zhang PetscSF sf; /* SF to send/recv matrix entries */ 153*076ba34aSJunchao Zhang MatScalarKokkosView abuf; /* buf of mat values in send/recv */ 154*076ba34aSJunchao Zhang Mat C1,C2,B_local; 155*076ba34aSJunchao Zhang KokkosCsrMatrix C1_global,C2_global,C_global; 156*076ba34aSJunchao Zhang KernelHandle kh; 157*076ba34aSJunchao Zhang MatMatStruct() { 158*076ba34aSJunchao Zhang C1 = C2 = B_local = NULL; 159*076ba34aSJunchao Zhang sf = NULL; 160*076ba34aSJunchao Zhang } 161*076ba34aSJunchao Zhang 162*076ba34aSJunchao Zhang ~MatMatStruct() { 163*076ba34aSJunchao Zhang MatDestroy(&C1); 164*076ba34aSJunchao Zhang MatDestroy(&C2); 165*076ba34aSJunchao Zhang MatDestroy(&B_local); 166*076ba34aSJunchao Zhang PetscSFDestroy(&sf); 167*076ba34aSJunchao Zhang kh.destroy_spadd_handle(); 168*076ba34aSJunchao Zhang } 169*076ba34aSJunchao Zhang }; 170*076ba34aSJunchao Zhang 171*076ba34aSJunchao Zhang struct MatMatStruct_AB : public MatMatStruct { 172*076ba34aSJunchao Zhang MatColIdxKokkosView rows; 173*076ba34aSJunchao Zhang MatRowMapKokkosView rowoffset; 174*076ba34aSJunchao Zhang Mat B_other,C_petsc; /* SEQAIJKOKKOS matrices. TODO: have a better var name than C_petsc */ 175*076ba34aSJunchao Zhang 176*076ba34aSJunchao Zhang MatMatStruct_AB() : B_other(NULL),C_petsc(NULL){} 177*076ba34aSJunchao Zhang ~MatMatStruct_AB() { 178*076ba34aSJunchao Zhang MatDestroy(&B_other); 179*076ba34aSJunchao Zhang MatDestroy(&C_petsc); 180*076ba34aSJunchao Zhang } 181*076ba34aSJunchao Zhang }; 182*076ba34aSJunchao Zhang 183*076ba34aSJunchao Zhang struct MatMatStruct_AtB : public MatMatStruct { 184*076ba34aSJunchao Zhang MatRowMapKokkosView srcrowoffset,dstrowoffset; 185*076ba34aSJunchao Zhang }; 186*076ba34aSJunchao Zhang 187*076ba34aSJunchao Zhang struct MatProductData_MPIAIJKokkos 188*076ba34aSJunchao Zhang { 189*076ba34aSJunchao Zhang MatMatStruct_AB *mmAB; 190*076ba34aSJunchao Zhang MatMatStruct_AtB *mmAtB; 191*076ba34aSJunchao Zhang PetscBool reusesym; 192*076ba34aSJunchao Zhang 193*076ba34aSJunchao Zhang MatProductData_MPIAIJKokkos(): mmAB(NULL),mmAtB(NULL),reusesym(PETSC_FALSE){} 194*076ba34aSJunchao Zhang ~MatProductData_MPIAIJKokkos() { 195*076ba34aSJunchao Zhang delete mmAB; 196*076ba34aSJunchao Zhang delete mmAtB; 197*076ba34aSJunchao Zhang } 198*076ba34aSJunchao Zhang }; 199*076ba34aSJunchao Zhang 200*076ba34aSJunchao Zhang static PetscErrorCode MatProductDataDestroy_MPIAIJKokkos(void *data) 201*076ba34aSJunchao Zhang { 202*076ba34aSJunchao Zhang PetscFunctionBegin; 203*076ba34aSJunchao Zhang CHKERRCXX(delete static_cast<MatProductData_MPIAIJKokkos*>(data)); 204*076ba34aSJunchao Zhang PetscFunctionReturn(0); 205*076ba34aSJunchao Zhang } 206*076ba34aSJunchao Zhang 207*076ba34aSJunchao Zhang /* MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds - Get a KokkosCsrMatrix from a MATSEQAIJKOKKOS matrix 208*076ba34aSJunchao Zhang 209*076ba34aSJunchao Zhang Input Parameters: 210*076ba34aSJunchao Zhang + A - the MATSEQAIJKOKKOS matrix 211*076ba34aSJunchao Zhang . N - new column size for the returned Kokkos matrix 212*076ba34aSJunchao Zhang - l2g - a map that maps old col ids to new col ids 213*076ba34aSJunchao Zhang 214*076ba34aSJunchao Zhang Output Parameters: 215*076ba34aSJunchao Zhang . csrmat - the Kokkos matrix, which has the same row size as A, shares a, i but not j with A. 216*076ba34aSJunchao Zhang */ 217*076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(Mat A,PetscInt N,const ConstMatColIdxKokkosView& l2g,KokkosCsrMatrix& csrmat) 218*076ba34aSJunchao Zhang { 219*076ba34aSJunchao Zhang KokkosCsrMatrix& orig = static_cast<Mat_SeqAIJKokkos*>(A->spptr)->csrmat; 220*076ba34aSJunchao Zhang MatColIdxKokkosView jg("jg",orig.nnz()); /* New j array for csrmat */ 221*076ba34aSJunchao Zhang 222*076ba34aSJunchao Zhang PetscFunctionBegin; 223*076ba34aSJunchao Zhang CHKERRCXX(Kokkos::parallel_for(orig.nnz(), KOKKOS_LAMBDA(const PetscInt i) {jg(i) = l2g(orig.graph.entries(i));})); 224*076ba34aSJunchao Zhang CHKERRCXX(csrmat = KokkosCsrMatrix("csrmat",orig.numRows(),N,orig.nnz(),orig.values,orig.graph.row_map,jg)); 225*076ba34aSJunchao Zhang PetscFunctionReturn(0); 226*076ba34aSJunchao Zhang } 227*076ba34aSJunchao Zhang 228*076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices - Set the diag and offdiag matrices of a MATMPIAIJKOKKOS matrix. 229*076ba34aSJunchao Zhang It is similar to MatCreateMPIAIJWithSplitArrays. 230*076ba34aSJunchao Zhang 231*076ba34aSJunchao Zhang Input Parameters: 232*076ba34aSJunchao Zhang + mat - the MATMPIAIJKOKKOS matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set 233*076ba34aSJunchao Zhang . A - the diag matrix using local col ids 234*076ba34aSJunchao Zhang - B - the offdiag matrix using global col ids 235*076ba34aSJunchao Zhang 236*076ba34aSJunchao Zhang Output Parameters: 237*076ba34aSJunchao Zhang . mat - the updated MATMPIAIJKOKKOS matrix 238*076ba34aSJunchao Zhang */ 239*076ba34aSJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Mat mat,Mat A,Mat B) 240*076ba34aSJunchao Zhang { 241*076ba34aSJunchao Zhang PetscErrorCode ierr; 242*076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ*>(mat->data); 243*076ba34aSJunchao Zhang PetscInt m,n,M,N,Am,An,Bm,Bn; 244*076ba34aSJunchao Zhang Mat_SeqAIJKokkos *bkok = static_cast<Mat_SeqAIJKokkos*>(B->spptr); 245*076ba34aSJunchao Zhang 246*076ba34aSJunchao Zhang PetscFunctionBegin; 247*076ba34aSJunchao Zhang ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr); 248*076ba34aSJunchao Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 249*076ba34aSJunchao Zhang ierr = MatGetLocalSize(A,&Am,&An);CHKERRQ(ierr); 250*076ba34aSJunchao Zhang ierr = MatGetLocalSize(B,&Bm,&Bn);CHKERRQ(ierr); 251*076ba34aSJunchao Zhang 252*076ba34aSJunchao Zhang if (m != Am || m != Bm) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"local number of rows do not match"); 253*076ba34aSJunchao Zhang if (n != An) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"local number of columns do not match"); 254*076ba34aSJunchao Zhang if (N != Bn) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"global number of columns do not match"); 255*076ba34aSJunchao Zhang if (mpiaij->A || mpiaij->B) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"A, B of the MPIAIJ matrix are not empty"); 256*076ba34aSJunchao Zhang mpiaij->A = A; 257*076ba34aSJunchao Zhang mpiaij->B = B; 258*076ba34aSJunchao Zhang 259*076ba34aSJunchao Zhang mat->preallocated = PETSC_TRUE; 260*076ba34aSJunchao Zhang mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 261*076ba34aSJunchao Zhang 262*076ba34aSJunchao Zhang ierr = MatSetOption(mat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE);CHKERRQ(ierr); 263*076ba34aSJunchao Zhang ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 264*076ba34aSJunchao Zhang /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 265*076ba34aSJunchao Zhang also gets mpiaij->B compacted, with its col ids and size reduced 266*076ba34aSJunchao Zhang */ 267*076ba34aSJunchao Zhang ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 268*076ba34aSJunchao Zhang ierr = MatSetOption(mat,MAT_NO_OFF_PROC_ENTRIES,PETSC_FALSE);CHKERRQ(ierr); 269*076ba34aSJunchao Zhang ierr = MatSetOption(mat,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 270*076ba34aSJunchao Zhang 271*076ba34aSJunchao Zhang /* Update bkok with new local col ids (stored on host) and size */ 272*076ba34aSJunchao Zhang bkok->j_dual.modify_host(); 273*076ba34aSJunchao Zhang bkok->j_dual.sync_device(); 274*076ba34aSJunchao Zhang bkok->SetColSize(mpiaij->B->cmap->n); 275*076ba34aSJunchao Zhang PetscFunctionReturn(0); 276*076ba34aSJunchao Zhang } 277*076ba34aSJunchao Zhang 278*076ba34aSJunchao Zhang /* MatSeqAIJKokkosBcast - Bcast rows of a SEQAIJKOKKOS matrice (B) to form a SEQAIJKOKKOS matrix (C). 279*076ba34aSJunchao Zhang 280*076ba34aSJunchao Zhang It is essentially the MPIAIJKOKKOS counterpart of MatGetBrowsOfAoCols_MPIAIJ, but supports device and uses PetscSF. 281*076ba34aSJunchao Zhang In the given ownerSF, leaves correspond to rows in C, and roots correspond to rows in B. Roots may connect to multiple leaves. 282*076ba34aSJunchao Zhang Suppose C's j-th row is connected to a root identified by PetscSFNode (k,i), it means we will bcast the i-th row of B on rank k 283*076ba34aSJunchao Zhang to j-th row of C. ownerSF's leaves must be contiguous (in other words, as if ilocal=NULL was used to set its graph). 284*076ba34aSJunchao Zhang 285*076ba34aSJunchao Zhang Collective on comm of ownerSF 286*076ba34aSJunchao Zhang 287*076ba34aSJunchao Zhang Input Parameters: 288*076ba34aSJunchao Zhang + B - the SEQAIJKOKKOS matrix, using local col ids 289*076ba34aSJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 290*076ba34aSJunchao Zhang . N - global col ids are in range of [0,N). N Must be the same across ranks (nonsignificant in MAT_REUSE_MATRIX) 291*076ba34aSJunchao Zhang . l2g - a map mapping B's local col ids to global ones (nonsignificant in MAT_REUSE_MATRIX) 292*076ba34aSJunchao Zhang . ownerSF - the ownership SF (nonsignificant in MAT_REUSE_MATRIX) 293*076ba34aSJunchao Zhang 294*076ba34aSJunchao Zhang Input/Output Parameters (out when resue = MAT_INITIAL_MATRIX, inout when reuse = MAT_REUSE_MATRIX) 295*076ba34aSJunchao Zhang + bcastSF - the SF used to bcast rows of B. This plain SF does buffer (abuf) to buffer (Ca) send/recv. In this SF, vertices are nonzeros. 296*076ba34aSJunchao Zhang . abuf - buffer for sending matrix values 297*076ba34aSJunchao Zhang . rows - array containing indices of (local) rows that this rank needs to bcast to others. Each receiver rank has a chunk in rows[]. 298*076ba34aSJunchao Zhang Values in rows[] might have repeats, which simply indicates a row will be bcast'ed to multiple neighbors. 299*076ba34aSJunchao Zhang . rowoffset - For each row in rows[], it will be copied to rowoffset[] at abuf[] 300*076ba34aSJunchao Zhang - C - the SEQAIJKOKKOS matrix made of the bcast'ed rows, using local col ids. 301*076ba34aSJunchao Zhang */ 302*076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJKokkosBcast(Mat B,MatReuse reuse,PetscInt N,const ConstMatColIdxKokkosView& l2g,PetscSF ownerSF, 303*076ba34aSJunchao Zhang PetscSF& bcastSF,MatScalarKokkosView& abuf,MatColIdxKokkosView& rows, 304*076ba34aSJunchao Zhang MatRowMapKokkosView& rowoffset,Mat& C) 305*076ba34aSJunchao Zhang { 306*076ba34aSJunchao Zhang PetscErrorCode ierr; 307*076ba34aSJunchao Zhang Mat_SeqAIJKokkos *bkok,*ckok; 308*076ba34aSJunchao Zhang 309*076ba34aSJunchao Zhang PetscFunctionBegin; 310*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosSyncDevice(B);CHKERRQ(ierr); /* Make sure B->spptr is accessible */ 311*076ba34aSJunchao Zhang bkok = static_cast<Mat_SeqAIJKokkos*>(B->spptr); 312*076ba34aSJunchao Zhang 313*076ba34aSJunchao Zhang if (reuse == MAT_REUSE_MATRIX) { 314*076ba34aSJunchao Zhang ckok = static_cast<Mat_SeqAIJKokkos*>(C->spptr); 315*076ba34aSJunchao Zhang 316*076ba34aSJunchao Zhang const auto& Ba = bkok->a_dual.view_device(); 317*076ba34aSJunchao Zhang const auto& Bi = bkok->i_dual.view_device(); 318*076ba34aSJunchao Zhang const auto& Ca = ckok->a_dual.view_device(); 319*076ba34aSJunchao Zhang 320*076ba34aSJunchao Zhang /* Copy Ba to abuf */ 321*076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(rows.extent(0), Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 322*076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* rows[i] is r-th row of B */ 323*076ba34aSJunchao Zhang PetscInt r = rows(i); 324*076ba34aSJunchao Zhang PetscInt base = rowoffset(i); /* Copy r-th row of B to this offset in abuf[] */ 325*076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,Bi(r+1)-Bi(r)),[&](PetscInt k) { 326*076ba34aSJunchao Zhang abuf(base+k) = Ba(Bi(r)+k); 327*076ba34aSJunchao Zhang }); 328*076ba34aSJunchao Zhang }); 329*076ba34aSJunchao Zhang 330*076ba34aSJunchao Zhang /* Send abuf to Ca through bcastSF and then mark C is updated on device */ 331*076ba34aSJunchao Zhang ierr = PetscSFBcastBegin(bcastSF,MPIU_SCALAR,abuf.data(),Ca.data(),MPI_REPLACE);CHKERRQ(ierr); /* TODO: get memtype for abuf */ 332*076ba34aSJunchao Zhang ierr = PetscSFBcastEnd (bcastSF,MPIU_SCALAR,abuf.data(),Ca.data(),MPI_REPLACE);CHKERRQ(ierr); 333*076ba34aSJunchao Zhang ckok->a_dual.modify_device(); 334*076ba34aSJunchao Zhang } else if (reuse == MAT_INITIAL_MATRIX) { 335*076ba34aSJunchao Zhang MPI_Comm comm; 336*076ba34aSJunchao Zhang PetscMPIInt tag; 337*076ba34aSJunchao Zhang PetscInt k,Cm,Cn,Cnnz,*Ci_h,nroots,nleaves; 338*076ba34aSJunchao Zhang 339*076ba34aSJunchao Zhang ierr = PetscObjectGetComm((PetscObject)ownerSF,&comm);CHKERRMPI(ierr); 340*076ba34aSJunchao Zhang ierr = PetscSFGetGraph(ownerSF,&nroots,&nleaves,NULL,NULL);CHKERRQ(ierr); 341*076ba34aSJunchao Zhang Cm = nleaves; /* row size of C */ 342*076ba34aSJunchao Zhang Cn = N; /* col size of C, which initially uses global ids, so we can safely set its col size as N */ 343*076ba34aSJunchao Zhang 344*076ba34aSJunchao Zhang /* Get row lens (nz) of B's rows for later fast query */ 345*076ba34aSJunchao Zhang PetscInt *Browlens; 346*076ba34aSJunchao Zhang const PetscInt *tmp = bkok->i_host_data(); 347*076ba34aSJunchao Zhang ierr = PetscMalloc1(nroots,&Browlens);CHKERRQ(ierr); 348*076ba34aSJunchao Zhang for (k=0; k<nroots; k++) Browlens[k] = tmp[k+1]-tmp[k]; 349*076ba34aSJunchao Zhang 350*076ba34aSJunchao Zhang /* By ownerSF, each proc gets lens of rows of C */ 351*076ba34aSJunchao Zhang MatRowMapKokkosDualView Ci("i",Cm+1); /* C's rowmap */ 352*076ba34aSJunchao Zhang Ci_h = Ci.view_host().data(); 353*076ba34aSJunchao Zhang Ci_h[0] = 0; 354*076ba34aSJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(ownerSF,MPIU_INT,PETSC_MEMTYPE_HOST,Browlens,PETSC_MEMTYPE_HOST,&Ci_h[1],MPI_REPLACE);CHKERRQ(ierr); 355*076ba34aSJunchao Zhang ierr = PetscSFBcastEnd(ownerSF,MPIU_INT,Browlens,&Ci_h[1],MPI_REPLACE);CHKERRQ(ierr); 356*076ba34aSJunchao Zhang for (k=1; k<Cm+1; k++) Ci_h[k] += Ci_h[k-1]; /* Convert lens to CSR */ 357*076ba34aSJunchao Zhang Cnnz = Ci_h[Cm]; 358*076ba34aSJunchao Zhang Ci.modify_host(); 359*076ba34aSJunchao Zhang Ci.sync_device(); 360*076ba34aSJunchao Zhang 361*076ba34aSJunchao Zhang /* With the newly known Cnnz, we are able to allocate (j, a) for C on host & device */ 362*076ba34aSJunchao Zhang MatColIdxKokkosDualView Cj("j",Cnnz); 363*076ba34aSJunchao Zhang MatScalarKokkosDualView Ca("a",Cnnz); 364*076ba34aSJunchao Zhang 365*076ba34aSJunchao Zhang /* Now build the bcastSF to fill Ca, Cj. This plain SF only does (contiguous) buffer to buffer send/recv */ 366*076ba34aSJunchao Zhang const PetscMPIInt *iranks,*ranks; 367*076ba34aSJunchao Zhang const PetscInt *ioffset,*irootloc,*roffset; 368*076ba34aSJunchao Zhang PetscInt i,j,niranks,nranks,*sdisp,*rdisp,*rowptr; 369*076ba34aSJunchao Zhang MPI_Request *reqs; 370*076ba34aSJunchao Zhang 371*076ba34aSJunchao Zhang ierr = PetscSFGetLeafRanks(ownerSF,&niranks,&iranks,&ioffset,&irootloc);CHKERRQ(ierr); /* irootloc[] contains indices of rows I need to send to each receiver */ 372*076ba34aSJunchao Zhang ierr = PetscSFGetRootRanks(ownerSF,&nranks,&ranks,&roffset,NULL/*rmine*/,NULL/*rremote*/);CHKERRQ(ierr); /* recv info */ 373*076ba34aSJunchao Zhang 374*076ba34aSJunchao Zhang /* figure out offsets at the send buffer, to build the SF 375*076ba34aSJunchao Zhang sdisp[] - stores offsets of nonzeros (in abuf or jbuf, see later) I need to send, per receiver. 376*076ba34aSJunchao Zhang rowptr[] - stores offsets for data of each row in abuf 377*076ba34aSJunchao Zhang 378*076ba34aSJunchao Zhang rdisp[] - to receive sdisp[] 379*076ba34aSJunchao Zhang */ 380*076ba34aSJunchao Zhang ierr = PetscMalloc3(niranks+1,&sdisp,nranks,&rdisp,niranks+nranks,&reqs);CHKERRQ(ierr); 381*076ba34aSJunchao Zhang MatRowMapKokkosViewHost rowptr_h("rowptr_h",ioffset[niranks]+1); /* Let Kokkos do the allocation, so that we can do an easy mirror later */ 382*076ba34aSJunchao Zhang rowptr = rowptr_h.data(); 383*076ba34aSJunchao Zhang 384*076ba34aSJunchao Zhang sdisp[0] = 0; 385*076ba34aSJunchao Zhang rowptr[0] = 0; 386*076ba34aSJunchao Zhang for (i=0; i<niranks; i++) { /* for each receiver */ 387*076ba34aSJunchao Zhang PetscInt len, nz = 0; 388*076ba34aSJunchao Zhang for (j=ioffset[i]; j<ioffset[i+1]; j++) { /* for each row to this receiver */ 389*076ba34aSJunchao Zhang len = Browlens[irootloc[j]]; 390*076ba34aSJunchao Zhang rowptr[j+1] = rowptr[j] + len; 391*076ba34aSJunchao Zhang nz += len; 392*076ba34aSJunchao Zhang } 393*076ba34aSJunchao Zhang sdisp[i+1] = sdisp[i] + nz; 394*076ba34aSJunchao Zhang } 395*076ba34aSJunchao Zhang ierr = PetscCommGetNewTag(comm,&tag);CHKERRMPI(ierr); 396*076ba34aSJunchao Zhang for (i=0; i<nranks; i++) {ierr = MPI_Irecv(&rdisp[i],1,MPIU_INT,ranks[i],tag,comm,&reqs[i]);CHKERRMPI(ierr);} 397*076ba34aSJunchao Zhang for (i=0; i<niranks; i++) {ierr = MPI_Isend(&sdisp[i],1,MPIU_INT,iranks[i],tag,comm,&reqs[nranks+i]);CHKERRMPI(ierr);} 398*076ba34aSJunchao Zhang ierr = MPI_Waitall(niranks+nranks,reqs,MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 399*076ba34aSJunchao Zhang 400*076ba34aSJunchao Zhang PetscInt nleaves2 = Cnnz; /* leaves are the nonzeros I will receive */ 401*076ba34aSJunchao Zhang PetscInt nroots2 = sdisp[niranks]; /* roots are the nonzeros (in abuf) I will send */ 402*076ba34aSJunchao Zhang PetscSFNode *iremote; 403*076ba34aSJunchao Zhang ierr = PetscMalloc1(nleaves2,&iremote);CHKERRQ(ierr); 404*076ba34aSJunchao Zhang for (i=0; i<nranks; i++) { /* for each sender */ 405*076ba34aSJunchao Zhang k = 0; 406*076ba34aSJunchao Zhang for (j=Ci_h[roffset[i]]; j<Ci_h[roffset[i+1]]; j++) { 407*076ba34aSJunchao Zhang iremote[j].rank = ranks[i]; 408*076ba34aSJunchao Zhang iremote[j].index = rdisp[i] + k; 409*076ba34aSJunchao Zhang k++; 410*076ba34aSJunchao Zhang } 411*076ba34aSJunchao Zhang } 412*076ba34aSJunchao Zhang /* TODO: we should extend PetscSF APIs for this buffer-to-buffer send/recv */ 413*076ba34aSJunchao Zhang ierr = PetscSFCreate(comm,&bcastSF);CHKERRQ(ierr); 414*076ba34aSJunchao Zhang ierr = PetscSFSetGraph(bcastSF,nroots2,nleaves2,NULL/*ilocal*/,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 415*076ba34aSJunchao Zhang 416*076ba34aSJunchao Zhang /* Extract selected rows of B, and copy their (a, j) into abuf[] and jbuf[], with j converted 417*076ba34aSJunchao Zhang from local to global. Then use bcastSF to fill Ca, Cj. 418*076ba34aSJunchao Zhang */ 419*076ba34aSJunchao Zhang ConstMatColIdxKokkosViewHost rows_h(irootloc,ioffset[niranks]); /* irootloc[] stores indices of rows I need to send */ 420*076ba34aSJunchao Zhang MatColIdxKokkosView rows("rows",ioffset[niranks]); 421*076ba34aSJunchao Zhang Kokkos::deep_copy(rows,rows_h); /* Use deep copy since irootoc is managed by PetscSF and we want 'rows' to be standalone */ 422*076ba34aSJunchao Zhang 423*076ba34aSJunchao Zhang rowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),rowptr_h); /* If no device, rowoffset will be an alias to rowptr_h */ 424*076ba34aSJunchao Zhang 425*076ba34aSJunchao Zhang MatColIdxKokkosView jbuf("jbuf",sdisp[niranks]); /* send buf for (global) col ids */ 426*076ba34aSJunchao Zhang abuf = MatScalarKokkosView("abuf",sdisp[niranks]); /* send buf for mat values */ 427*076ba34aSJunchao Zhang 428*076ba34aSJunchao Zhang const auto& Ba = bkok->a_dual.view_device(); 429*076ba34aSJunchao Zhang const auto& Bi = bkok->i_dual.view_device(); 430*076ba34aSJunchao Zhang const auto& Bj = bkok->j_dual.view_device(); 431*076ba34aSJunchao Zhang 432*076ba34aSJunchao Zhang /* Copy Ba, Bj to abuf, jbuf with change col ids from local to global */ 433*076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(rows.extent(0), Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 434*076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* rows[i] is r-th row of B */ 435*076ba34aSJunchao Zhang PetscInt r = rows(i); 436*076ba34aSJunchao Zhang PetscInt base = rowoffset(i); /* Copy r-th row of B to this offset in abuf[] */ 437*076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,Bi(r+1)-Bi(r)),[&](PetscInt k) { 438*076ba34aSJunchao Zhang abuf(base+k) = Ba(Bi(r)+k); 439*076ba34aSJunchao Zhang jbuf(base+k) = l2g(Bj(Bi(r)+k)); 440*076ba34aSJunchao Zhang }); 441*076ba34aSJunchao Zhang }); 442*076ba34aSJunchao Zhang 443*076ba34aSJunchao Zhang /* Send abuf & jbuf to fill Ca, Cj */ 444*076ba34aSJunchao Zhang ierr = PetscSFBcastBegin(bcastSF,MPIU_INT, jbuf.data(),Cj.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 445*076ba34aSJunchao Zhang ierr = PetscSFBcastBegin(bcastSF,MPIU_SCALAR,abuf.data(),Ca.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 446*076ba34aSJunchao Zhang ierr = PetscSFBcastEnd (bcastSF,MPIU_INT, jbuf.data(),Cj.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 447*076ba34aSJunchao Zhang ierr = PetscSFBcastEnd (bcastSF,MPIU_SCALAR,abuf.data(),Ca.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 448*076ba34aSJunchao Zhang Cj.modify_device(); /* Mark Cj, Ca modified on device, but only sync Cj since we might not need Ca on host at all */ 449*076ba34aSJunchao Zhang Cj.sync_host(); 450*076ba34aSJunchao Zhang Ca.modify_device(); 451*076ba34aSJunchao Zhang 452*076ba34aSJunchao Zhang /* Construct C with Ca, Ci, Cj */ 453*076ba34aSJunchao Zhang auto ckok = new Mat_SeqAIJKokkos(Cm,Cn,Cnnz,Ci,Cj,Ca); 454*076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,ckok,&C);CHKERRQ(ierr); 455*076ba34aSJunchao Zhang ierr = PetscFree3(sdisp,rdisp,reqs);CHKERRQ(ierr); 456*076ba34aSJunchao Zhang ierr = PetscFree(Browlens);CHKERRQ(ierr); 457*076ba34aSJunchao Zhang } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unsupported MatReuse enum %d\n",reuse); 458*076ba34aSJunchao Zhang PetscFunctionReturn(0); 459*076ba34aSJunchao Zhang } 460*076ba34aSJunchao Zhang 461*076ba34aSJunchao Zhang /* MatSeqAIJKokkosReduce - Reduce rows of a SEQAIJKOKKOS matrix (A) to form a Kokkos Csr matrix (C) 462*076ba34aSJunchao Zhang 463*076ba34aSJunchao Zhang It is the reverse of MatSeqAIJKokkosBcast in some sense. 464*076ba34aSJunchao Zhang 465*076ba34aSJunchao Zhang Think each row of A as a leaf, then the given ownerSF specifies roots of the leaves. Roots may connect to multiple leaves. 466*076ba34aSJunchao Zhang In this routine, we reduce (i.e., concatenate) leaves (rows) at their roots to form potentially longer rows in C. Such rows might 467*076ba34aSJunchao Zhang contain repeats, which does not matter since they will be summed up by other routines. C's row size will be nroots of ownerSF. 468*076ba34aSJunchao Zhang 469*076ba34aSJunchao Zhang Input Parameters: 470*076ba34aSJunchao Zhang + A - the SEQAIJKOKKOS matrix to be reduced 471*076ba34aSJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 472*076ba34aSJunchao Zhang . local - true if A uses local col ids; false if A is already in global col ids. 473*076ba34aSJunchao Zhang . N - if local, N is A's global col size 474*076ba34aSJunchao Zhang . l2g - if local, a map mapping A's local col ids to global ones, which are in range of [0,N). 475*076ba34aSJunchao Zhang - ownerSF - the SF specifies ownership (root) of rows in A 476*076ba34aSJunchao Zhang 477*076ba34aSJunchao Zhang Output Parameters: 478*076ba34aSJunchao Zhang + reduceSF - the SF to reduce A's rows to contiguous buffers at the receiver side 479*076ba34aSJunchao Zhang . abuf - a contiguous buffer to receive A's rows sent to this proc. Suppose there are 'nrows' such rows. 480*076ba34aSJunchao Zhang . srcrowoffset - offset array of size nrows+1. Each entry is the corresponding row's offset in abuf[]. srcrowoffset[i+1]-srcrowoffset[i] is row i's len. 481*076ba34aSJunchao Zhang . dstrowoffset - offset array of size nrows. Each entry is the corresponding row's offset in Ca[], i.e., C's 'a' array. Row i, i+1 in abuf[] may go to 482*076ba34aSJunchao Zhang unrelated places in Ca, so dstrowoffset is not in CSR-like format as srcrowoffset. 483*076ba34aSJunchao Zhang - C - the matrix made up by rows sent to me from other ranks, using global col ids 484*076ba34aSJunchao Zhang 485*076ba34aSJunchao Zhang TODO: we can even have MatSeqAIJKokkosReduceBegin/End to provide oppertunity for callers to overlap comp./comm. when reuse = MAT_REUSE_MATRIX. 486*076ba34aSJunchao Zhang */ 487*076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJKokkosReduce(Mat A,MatReuse reuse,PetscBool local,PetscInt N,const ConstMatColIdxKokkosView& l2g,PetscSF ownerSF, 488*076ba34aSJunchao Zhang PetscSF& reduceSF,MatScalarKokkosView& abuf, 489*076ba34aSJunchao Zhang MatRowMapKokkosView& srcrowoffset,MatRowMapKokkosView& dstrowoffset, 490*076ba34aSJunchao Zhang KokkosCsrMatrix& C) 491*076ba34aSJunchao Zhang { 492*076ba34aSJunchao Zhang PetscErrorCode ierr; 493*076ba34aSJunchao Zhang PetscInt i,r,Am,An,Annz,Cnnz,nrows; 494*076ba34aSJunchao Zhang const PetscInt *Ai; 495*076ba34aSJunchao Zhang Mat_SeqAIJKokkos *akok; 496*076ba34aSJunchao Zhang 497*076ba34aSJunchao Zhang PetscFunctionBegin; 498*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosSyncDevice(A);CHKERRQ(ierr); /* So that A's latest data is on device */ 499*076ba34aSJunchao Zhang ierr = MatGetSize(A,&Am,&An); 500*076ba34aSJunchao Zhang Ai = static_cast<Mat_SeqAIJ*>(A->data)->i; 501*076ba34aSJunchao Zhang akok = static_cast<Mat_SeqAIJKokkos*>(A->spptr); 502*076ba34aSJunchao Zhang Annz = Ai[Am]; 503*076ba34aSJunchao Zhang 504*076ba34aSJunchao Zhang if (reuse == MAT_REUSE_MATRIX) { 505*076ba34aSJunchao Zhang /* Send Aa to abuf */ 506*076ba34aSJunchao Zhang ierr = PetscSFReduceBegin(reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 507*076ba34aSJunchao Zhang ierr = PetscSFReduceEnd (reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 508*076ba34aSJunchao Zhang 509*076ba34aSJunchao Zhang /* Copy abuf to Ca */ 510*076ba34aSJunchao Zhang const MatScalarKokkosView& Ca = C.values; 511*076ba34aSJunchao Zhang nrows = dstrowoffset.extent(0); /* Not srcrowoffset[] since it has an extra entry for CSR */ 512*076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(nrows, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 513*076ba34aSJunchao Zhang PetscInt i = t.league_rank(); 514*076ba34aSJunchao Zhang PetscInt src = srcrowoffset(i), dst = dstrowoffset(i); 515*076ba34aSJunchao Zhang PetscInt len = srcrowoffset(i+1) - srcrowoffset(i); 516*076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,len), [&](PetscInt k) {Ca(dst+k) = abuf(src+k);}); 517*076ba34aSJunchao Zhang }); 518*076ba34aSJunchao Zhang } else if (reuse == MAT_INITIAL_MATRIX) { 519*076ba34aSJunchao Zhang MPI_Comm comm; 520*076ba34aSJunchao Zhang MPI_Request *reqs; 521*076ba34aSJunchao Zhang PetscMPIInt tag; 522*076ba34aSJunchao Zhang PetscInt Cm; 523*076ba34aSJunchao Zhang 524*076ba34aSJunchao Zhang ierr = PetscObjectGetComm((PetscObject)ownerSF,&comm);CHKERRQ(ierr); 525*076ba34aSJunchao Zhang ierr = PetscCommGetNewTag(comm,&tag);CHKERRQ(ierr); 526*076ba34aSJunchao Zhang 527*076ba34aSJunchao Zhang PetscInt niranks,nranks,nroots,nleaves; 528*076ba34aSJunchao Zhang const PetscMPIInt *iranks,*ranks; 529*076ba34aSJunchao Zhang const PetscInt *ioffset,*rows,*roffset; /* rows[] contains local indices of rows scattered to me from others. ioffset[] is a CSR on rows[] */ 530*076ba34aSJunchao Zhang ierr = PetscSFSetUp(ownerSF);CHKERRQ(ierr); 531*076ba34aSJunchao Zhang ierr = PetscSFGetLeafRanks(ownerSF,&niranks,&iranks,&ioffset,&rows);CHKERRQ(ierr); /* recv info: iranks[] will send rows to me */ 532*076ba34aSJunchao Zhang ierr = PetscSFGetRootRanks(ownerSF,&nranks,&ranks,&roffset,NULL/*rmine*/,NULL/*rremote*/);CHKERRQ(ierr); /* send info */ 533*076ba34aSJunchao Zhang ierr = PetscSFGetGraph(ownerSF,&nroots,&nleaves,NULL,NULL);CHKERRQ(ierr); 534*076ba34aSJunchao Zhang if (nleaves != Am) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"ownerSF's nleaves(%D) != row size of A(%D)\n",nleaves,Am); 535*076ba34aSJunchao Zhang Cm = nroots; 536*076ba34aSJunchao Zhang nrows = ioffset[niranks]; /* # of rows to be received. Might receive same row (each is partial) from different senders */ 537*076ba34aSJunchao Zhang 538*076ba34aSJunchao Zhang /* Tell owners how long each row I will send */ 539*076ba34aSJunchao Zhang PetscInt *srowlens; /* send buf of row lens */ 540*076ba34aSJunchao Zhang MatRowMapKokkosViewHost rrowlens_h("rrowoffset_h",nrows+1); /* recv buf of row lens. +1 to make CSR later. Memory might be passed to other views */ 541*076ba34aSJunchao Zhang PetscInt *rrowlens = rrowlens_h.data(); 542*076ba34aSJunchao Zhang 543*076ba34aSJunchao Zhang ierr = PetscMalloc2(Am,&srowlens,niranks+nranks,&reqs);CHKERRQ(ierr); 544*076ba34aSJunchao Zhang for (i=0; i<Am; i++) srowlens[i] = Ai[i+1] - Ai[i]; 545*076ba34aSJunchao Zhang rrowlens[0] = 0; 546*076ba34aSJunchao Zhang rrowlens++; /* shift the pointer to make the following expression more readable */ 547*076ba34aSJunchao Zhang for (i=0; i<niranks; i++){ierr = MPI_Irecv(&rrowlens[ioffset[i]],ioffset[i+1]-ioffset[i],MPIU_INT,iranks[i],tag,comm,&reqs[i]);CHKERRMPI(ierr);} 548*076ba34aSJunchao Zhang for (i=0; i<nranks; i++) {ierr = MPI_Isend(&srowlens[roffset[i]],roffset[i+1]-roffset[i],MPIU_INT,ranks[i],tag,comm,&reqs[niranks+i]);CHKERRMPI(ierr);} 549*076ba34aSJunchao Zhang ierr = MPI_Waitall(niranks+nranks,reqs,MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 550*076ba34aSJunchao Zhang 551*076ba34aSJunchao Zhang /* Owner builds Ci on host by histogramming rrowlens[] */ 552*076ba34aSJunchao Zhang MatRowMapKokkosViewHost Ci_h("i",Cm+1); 553*076ba34aSJunchao Zhang Kokkos::deep_copy(Ci_h,0); /* Zero Ci */ 554*076ba34aSJunchao Zhang MatRowMapType *Ci_ptr = Ci_h.data(); 555*076ba34aSJunchao Zhang 556*076ba34aSJunchao Zhang for (i=0; i<nrows; i++) { 557*076ba34aSJunchao Zhang r = rows[i]; /* local row id of i-th received row */ 558*076ba34aSJunchao Zhang #if defined(PETSC_USE_DEBUG) 559*076ba34aSJunchao Zhang if (r<0 || r>=Cm) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"local row id (%D) is out of range [0,%D)\n",r,Cm); 560*076ba34aSJunchao Zhang #endif 561*076ba34aSJunchao Zhang Ci_ptr[r+1] += rrowlens[i]; /* add to length of row r in C */ 562*076ba34aSJunchao Zhang } 563*076ba34aSJunchao Zhang for (i=0; i<Cm; i++) Ci_ptr[i+1] += Ci_ptr[i]; /* to CSR format */ 564*076ba34aSJunchao Zhang Cnnz = Ci_ptr[Cm]; 565*076ba34aSJunchao Zhang 566*076ba34aSJunchao Zhang /* For each received row, compute src & dst offsets in memory copying (from recv bufs abuf, jbuf to Ca, Cj) */ 567*076ba34aSJunchao Zhang MatRowMapKokkosViewHost dstrowoffset_h("dstrowoffset_h",nrows); 568*076ba34aSJunchao Zhang PetscInt *dstrowoffset_hptr = dstrowoffset_h.data(); 569*076ba34aSJunchao Zhang PetscInt *currowlens; /* Current row lens. They are temp accumulators for row lens in C, to help build dstrowoffset */ 570*076ba34aSJunchao Zhang 571*076ba34aSJunchao Zhang ierr = PetscCalloc1(Cm,&currowlens);CHKERRQ(ierr); /* Init with zero, to be added to */ 572*076ba34aSJunchao Zhang for (i=0; i<nrows; i++) { /* for each row I receive */ 573*076ba34aSJunchao Zhang r = rows[i]; /* row id in C */ 574*076ba34aSJunchao Zhang dstrowoffset_hptr[i] = Ci_ptr[r] + currowlens[r]; /* dst offset of the new place for each recv'ed row in Ca/Cj */ 575*076ba34aSJunchao Zhang currowlens[r] += rrowlens[i]; /* accumulate to length of row r in C */ 576*076ba34aSJunchao Zhang } 577*076ba34aSJunchao Zhang ierr = PetscFree(currowlens);CHKERRQ(ierr); 578*076ba34aSJunchao Zhang 579*076ba34aSJunchao Zhang rrowlens--; 580*076ba34aSJunchao Zhang for (i=0; i<nrows; i++) rrowlens[i+1] += rrowlens[i]; /* Change rrowlens[] to CSR format */ 581*076ba34aSJunchao Zhang dstrowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),dstrowoffset_h); 582*076ba34aSJunchao Zhang srcrowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),rrowlens_h); /* src offset of each recv'ed row in abuf/jbuf */ 583*076ba34aSJunchao Zhang 584*076ba34aSJunchao Zhang /* Build the reduceSF, which performs buffer to buffer send/recv */ 585*076ba34aSJunchao Zhang PetscInt *sdisp,*rdisp; /* buffer to send offsets of roots, and buffer to recv them */ 586*076ba34aSJunchao Zhang ierr = PetscMalloc2(niranks,&sdisp,nranks,&rdisp);CHKERRQ(ierr); 587*076ba34aSJunchao Zhang for (i=0; i<niranks; i++) sdisp[i] = rrowlens[ioffset[i]]; 588*076ba34aSJunchao Zhang for (i=0; i<nranks; i++) {ierr = MPI_Irecv(&rdisp[i],1,MPIU_INT,ranks[i],tag,comm,&reqs[i]);CHKERRMPI(ierr);} 589*076ba34aSJunchao Zhang for (i=0; i<niranks; i++) {ierr = MPI_Isend(&sdisp[i],1,MPIU_INT,iranks[i],tag,comm,&reqs[nranks+i]);CHKERRMPI(ierr);} 590*076ba34aSJunchao Zhang ierr = MPI_Waitall(niranks+nranks,reqs,MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 591*076ba34aSJunchao Zhang 592*076ba34aSJunchao Zhang /* Nonzeros in abuf/jbuf are roots and those in A are leaves */ 593*076ba34aSJunchao Zhang PetscInt nroots2 = Cnnz,nleaves2 = Annz; 594*076ba34aSJunchao Zhang PetscSFNode *iremote; 595*076ba34aSJunchao Zhang ierr = PetscMalloc1(nleaves2,&iremote);CHKERRQ(ierr); /* no free, since memory will be given to reduceSF */ 596*076ba34aSJunchao Zhang for (i=0; i<nranks; i++) { 597*076ba34aSJunchao Zhang PetscInt rootbase = rdisp[i]; /* root offset at this root rank */ 598*076ba34aSJunchao Zhang PetscInt leafbase = Ai[roffset[i]]; /* leaf base */ 599*076ba34aSJunchao Zhang PetscInt nz = Ai[roffset[i+1]] - leafbase; /* I will send nz nonzeros to this root rank */ 600*076ba34aSJunchao Zhang for (PetscInt k=0; k<nz; k++) { 601*076ba34aSJunchao Zhang iremote[leafbase+k].rank = ranks[i]; 602*076ba34aSJunchao Zhang iremote[leafbase+k].index = rootbase + k; 603*076ba34aSJunchao Zhang } 604*076ba34aSJunchao Zhang } 605*076ba34aSJunchao Zhang ierr = PetscSFCreate(comm,&reduceSF);CHKERRQ(ierr); 606*076ba34aSJunchao Zhang ierr = PetscSFSetGraph(reduceSF,nroots2,nleaves2,NULL,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 607*076ba34aSJunchao Zhang ierr = PetscFree2(sdisp,rdisp);CHKERRQ(ierr); 608*076ba34aSJunchao Zhang 609*076ba34aSJunchao Zhang /* Reduce Aa, Ajg to abuf and jbuf */ 610*076ba34aSJunchao Zhang 611*076ba34aSJunchao Zhang /* If A uses local col ids, convert them to global ones before sending */ 612*076ba34aSJunchao Zhang MatColIdxKokkosView Ajg; 613*076ba34aSJunchao Zhang if (local) { 614*076ba34aSJunchao Zhang Ajg = MatColIdxKokkosView("j",Annz); 615*076ba34aSJunchao Zhang const MatColIdxKokkosView& Aj = akok->j_dual.view_device(); 616*076ba34aSJunchao Zhang Kokkos::parallel_for(Annz,KOKKOS_LAMBDA(const PetscInt i) {Ajg(i) = l2g(Aj(i));}); 617*076ba34aSJunchao Zhang } else { 618*076ba34aSJunchao Zhang Ajg = akok->j_dual.view_device(); /* no data copy, just take a reference */ 619*076ba34aSJunchao Zhang } 620*076ba34aSJunchao Zhang 621*076ba34aSJunchao Zhang MatColIdxKokkosView jbuf("jbuf",Cnnz); 622*076ba34aSJunchao Zhang abuf = MatScalarKokkosView("abuf",Cnnz); 623*076ba34aSJunchao Zhang ierr = PetscSFReduceBegin(reduceSF,MPIU_INT, Ajg.data(), jbuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 624*076ba34aSJunchao Zhang ierr = PetscSFReduceEnd (reduceSF,MPIU_INT, Ajg.data(), jbuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 625*076ba34aSJunchao Zhang ierr = PetscSFReduceBegin(reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 626*076ba34aSJunchao Zhang ierr = PetscSFReduceEnd (reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 627*076ba34aSJunchao Zhang 628*076ba34aSJunchao Zhang /* Copy data from abuf, jbuf to Ca, Cj */ 629*076ba34aSJunchao Zhang MatRowMapKokkosView Ci = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),Ci_h); /* Ci is an alias of Ci_h if no device */ 630*076ba34aSJunchao Zhang MatColIdxKokkosView Cj("j",Cnnz); 631*076ba34aSJunchao Zhang MatScalarKokkosView Ca("a",Cnnz); 632*076ba34aSJunchao Zhang 633*076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(nrows, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 634*076ba34aSJunchao Zhang PetscInt i = t.league_rank(); 635*076ba34aSJunchao Zhang PetscInt src = srcrowoffset(i), dst = dstrowoffset(i); 636*076ba34aSJunchao Zhang PetscInt len = srcrowoffset(i+1) - srcrowoffset(i); 637*076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,len), [&](PetscInt k) { 638*076ba34aSJunchao Zhang Ca(dst+k) = abuf(src+k); 639*076ba34aSJunchao Zhang Cj(dst+k) = jbuf(src+k); 640*076ba34aSJunchao Zhang }); 641*076ba34aSJunchao Zhang }); 642*076ba34aSJunchao Zhang 643*076ba34aSJunchao Zhang /* Build C with Ca, Ci, Cj */ 644*076ba34aSJunchao Zhang C = KokkosCsrMatrix("csrmat",Cm,N,Cnnz,Ca,Ci,Cj); 645*076ba34aSJunchao Zhang ierr = PetscFree2(srowlens,reqs);CHKERRQ(ierr); 646*076ba34aSJunchao Zhang } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unsupported MatReuse enum %d\n",reuse); 647*076ba34aSJunchao Zhang PetscFunctionReturn(0); 648*076ba34aSJunchao Zhang } 649*076ba34aSJunchao Zhang 650*076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithGlobalCSRMatrix - Set the diag and offdiag parts of a MATMPIAIJKOKKOS matrix by splitting a KokkosCsrMatrix 651*076ba34aSJunchao Zhang 652*076ba34aSJunchao Zhang Input Parameters: 653*076ba34aSJunchao Zhang + C - the MATMPIAIJKOKKOS matrix, of size m,n,M,N 654*076ba34aSJunchao Zhang . reuse - indicate whether the matrix has called this function before 655*076ba34aSJunchao Zhang . csrmat - the KokkosCsrMatrix, of size m,N 656*076ba34aSJunchao Zhang - Cdstart - when reuse == MAT_REUSE_MATRIX, it is an input parameter. For each row in csrmat, it stores the start of the first 657*076ba34aSJunchao Zhang entry of the diag block of C in csrmat's j array. E.g, if row i has col ids = {0, 3, 4, 5, 7, 9} and the first diag 658*076ba34aSJunchao Zhang entry is 5, then Cdstart[i] = 3. 659*076ba34aSJunchao Zhang 660*076ba34aSJunchao Zhang Output Parameters: 661*076ba34aSJunchao Zhang + C - the updated MATMPIAIJKOKKOS matrix 662*076ba34aSJunchao Zhang - Cdstart - when reuse == MAT_INITIAL_MATRIX, it is an output parameter 663*076ba34aSJunchao Zhang 664*076ba34aSJunchao Zhang Notes: 665*076ba34aSJunchao Zhang Between calls with MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX, csrmat must have the same nonzero pattern 666*076ba34aSJunchao Zhang */ 667*076ba34aSJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithGlobalCSRMatrix(Mat C,MatReuse reuse,const KokkosCsrMatrix& csrmat,MatRowMapKokkosView& Cdstart) 668*076ba34aSJunchao Zhang { 669*076ba34aSJunchao Zhang PetscErrorCode ierr; 670*076ba34aSJunchao Zhang const MatScalarKokkosView& Ca = csrmat.values; 671*076ba34aSJunchao Zhang const ConstMatRowMapKokkosView& Ci = csrmat.graph.row_map; 672*076ba34aSJunchao Zhang PetscInt m,n,N; 673*076ba34aSJunchao Zhang 674*076ba34aSJunchao Zhang PetscFunctionBegin; 675*076ba34aSJunchao Zhang ierr = MatGetLocalSize(C,&m,&n);CHKERRQ(ierr); 676*076ba34aSJunchao Zhang ierr = MatGetSize(C,NULL,&N);CHKERRQ(ierr); 677*076ba34aSJunchao Zhang 678*076ba34aSJunchao Zhang if (reuse == MAT_REUSE_MATRIX) { 679*076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ*>(C->data); 680*076ba34aSJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos*>(mpiaij->A->spptr); 681*076ba34aSJunchao Zhang Mat_SeqAIJKokkos *bkok = static_cast<Mat_SeqAIJKokkos*>(mpiaij->B->spptr); 682*076ba34aSJunchao Zhang const MatScalarKokkosView& Cda = akok->a_dual.view_device(),Coa = bkok->a_dual.view_device(); 683*076ba34aSJunchao Zhang const MatRowMapKokkosView& Cdi = akok->i_dual.view_device(),Coi = bkok->i_dual.view_device(); 684*076ba34aSJunchao Zhang 685*076ba34aSJunchao Zhang /* Fill 'a' of Cd and Co on device */ 686*076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(m, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 687*076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 688*076ba34aSJunchao Zhang PetscInt clen = Ci(i+1) - Ci(i); /* len of row i of C */ 689*076ba34aSJunchao Zhang PetscInt cdlen = Cdi(i+1) - Cdi(i); /* len of row i of Cd */ 690*076ba34aSJunchao Zhang PetscInt cdstart = Cdstart(i); /* [start, end) of row i of Cd in C */ 691*076ba34aSJunchao Zhang PetscInt cdend = cdstart + cdlen; 692*076ba34aSJunchao Zhang /* [0, clen) is cut into three blocks: [0, cdstart), [cdstart, cdend), [cdend, clen) */ 693*076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, clen), [&](PetscInt k) { 694*076ba34aSJunchao Zhang if (k < cdstart) { /* k in [0, cdstart) */ 695*076ba34aSJunchao Zhang Coa(Coi(i)+k) = Ca(Ci(i)+k); 696*076ba34aSJunchao Zhang } else if (k < cdend) { /* k in [cdstart, cdend) */ 697*076ba34aSJunchao Zhang Cda(Cdi(i)+(k-cdstart)) = Ca(Ci(i)+k); 698*076ba34aSJunchao Zhang } else { /* k in [cdend, clen) */ 699*076ba34aSJunchao Zhang Coa(Coi(i)+k-cdlen) = Ca(Ci(i)+k); 700*076ba34aSJunchao Zhang } 701*076ba34aSJunchao Zhang }); 702*076ba34aSJunchao Zhang }); 703*076ba34aSJunchao Zhang 704*076ba34aSJunchao Zhang akok->a_dual.modify_device(); 705*076ba34aSJunchao Zhang bkok->a_dual.modify_device(); 706*076ba34aSJunchao Zhang } else if (reuse == MAT_INITIAL_MATRIX) { 707*076ba34aSJunchao Zhang Mat Cd,Co; 708*076ba34aSJunchao Zhang const MatColIdxKokkosView& Cj = csrmat.graph.entries; 709*076ba34aSJunchao Zhang MatRowMapKokkosDualView Cdi_dual("i",m+1),Coi_dual("i",m+1); 710*076ba34aSJunchao Zhang MatRowMapKokkosView Cdi = Cdi_dual.view_device(),Coi = Coi_dual.view_device(); 711*076ba34aSJunchao Zhang PetscInt cstart,cend; 712*076ba34aSJunchao Zhang 713*076ba34aSJunchao Zhang /* Note that each row of C is sorted by col ids. We want to find out how to cut each row into three blocks: 714*076ba34aSJunchao Zhang left to the diag block, diag block, right to the diag block. The diag block have col ids in [cstart,cend). 715*076ba34aSJunchao Zhang Suppose a row of C has len nonzeros, indexed by [0, len). We want to know two indices: cdstart and cdend, 716*076ba34aSJunchao Zhang such that the three blocks are [0,cdstart), [cdstart,cdend), [cdend,len). The following code equivalentaly 717*076ba34aSJunchao Zhang stores values of cdstart and cdend-cstart (aka Cdi[]) instead. 718*076ba34aSJunchao Zhang */ 719*076ba34aSJunchao Zhang Cdstart = MatRowMapKokkosView("Cdstart",m); 720*076ba34aSJunchao Zhang ierr = PetscLayoutGetRange(C->cmap,&cstart,&cend);CHKERRQ(ierr); /* Not MatGetOwnershipRangeColumn() since C has not been preallocated yet */ 721*076ba34aSJunchao Zhang 722*076ba34aSJunchao Zhang /* I could use RangePolicy and one thread per row. But since each thread essentially does binary search, threads in a 723*076ba34aSJunchao Zhang CUDA warp would completely diverge. So I use TeamPolicy with a team size 1. 724*076ba34aSJunchao Zhang */ 725*076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(m, 1),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 726*076ba34aSJunchao Zhang Kokkos::single(Kokkos::PerTeam(t), [=] () { /* Only one thread works in a team */ 727*076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 728*076ba34aSJunchao Zhang PetscInt j,first,count,step; 729*076ba34aSJunchao Zhang 730*076ba34aSJunchao Zhang if (i == 0) { /* Set the first entry of the i arrays to zero on device, to be used in CSR */ 731*076ba34aSJunchao Zhang Cdi(0) = 0; 732*076ba34aSJunchao Zhang Coi(0) = 0; 733*076ba34aSJunchao Zhang } 734*076ba34aSJunchao Zhang 735*076ba34aSJunchao Zhang /* Do std::lower_bound(Ci(i),Ci(i+1),cstart) on Cj[]. We use j as the iterator. lower_bound() returns 736*076ba34aSJunchao Zhang in 'first' the first iterator with a value >= cstart, or last iterator if no such element is found. 737*076ba34aSJunchao Zhang */ 738*076ba34aSJunchao Zhang count = Ci(i+1)-Ci(i); 739*076ba34aSJunchao Zhang first = Ci(i); 740*076ba34aSJunchao Zhang while (count > 0) { 741*076ba34aSJunchao Zhang j = first; 742*076ba34aSJunchao Zhang step = count / 2; 743*076ba34aSJunchao Zhang j += step; 744*076ba34aSJunchao Zhang if (Cj(j) < cstart) { 745*076ba34aSJunchao Zhang first = ++j; 746*076ba34aSJunchao Zhang count -= step + 1; 747*076ba34aSJunchao Zhang } else count = step; 748*076ba34aSJunchao Zhang } 749*076ba34aSJunchao Zhang Cdstart(i) = first - Ci(i); /* 'first' is the while-loop's output */ 750*076ba34aSJunchao Zhang 751*076ba34aSJunchao Zhang /* Do std::lower_bound(first,Ci(i+1),cend) on Cj[] */ 752*076ba34aSJunchao Zhang count = Ci(i+1) - first; 753*076ba34aSJunchao Zhang while (count > 0) { 754*076ba34aSJunchao Zhang j = first; 755*076ba34aSJunchao Zhang step = count / 2; 756*076ba34aSJunchao Zhang j += step; 757*076ba34aSJunchao Zhang if (Cj(j) < cend) { 758*076ba34aSJunchao Zhang first = ++j; 759*076ba34aSJunchao Zhang count -= step + 1; 760*076ba34aSJunchao Zhang } else count = step; 761*076ba34aSJunchao Zhang } 762*076ba34aSJunchao Zhang Cdi(i+1) = first - (Ci(i)+Cdstart(i)); /* 'first' is the while-loop's output */ 763*076ba34aSJunchao Zhang Coi(i+1) = (Ci(i+1)-Ci(i)) - Cdi(i+1); /* Co's row len = C's row len - Cd's row len */ 764*076ba34aSJunchao Zhang }); 765*076ba34aSJunchao Zhang }); 766*076ba34aSJunchao Zhang 767*076ba34aSJunchao Zhang /* Convert row lens in Cdi[], Coi[] to CSR format using inclusive scan, e.g., changing [0,1,2,3] into [0,1,3,6] */ 768*076ba34aSJunchao Zhang Kokkos::parallel_scan(m+1,KOKKOS_LAMBDA(const PetscInt i,PetscInt& update,const bool final) { 769*076ba34aSJunchao Zhang update += Cdi(i); 770*076ba34aSJunchao Zhang if (final) Cdi(i) = update; 771*076ba34aSJunchao Zhang }); 772*076ba34aSJunchao Zhang Kokkos::parallel_scan(m+1,KOKKOS_LAMBDA(const PetscInt i,PetscInt& update,const bool final) { 773*076ba34aSJunchao Zhang update += Coi(i); 774*076ba34aSJunchao Zhang if (final) Coi(i) = update; 775*076ba34aSJunchao Zhang }); 776*076ba34aSJunchao Zhang 777*076ba34aSJunchao Zhang /* Get Cdi, Coi on host (it is not a waste, since we do need them on host in 778*076ba34aSJunchao Zhang MatCreateSeqAIJKokkosWithCSRMatrix() below), then get nnz of Cd and Co. 779*076ba34aSJunchao Zhang */ 780*076ba34aSJunchao Zhang Cdi_dual.modify_device(); 781*076ba34aSJunchao Zhang Coi_dual.modify_device(); 782*076ba34aSJunchao Zhang Cdi_dual.sync_host(); 783*076ba34aSJunchao Zhang Coi_dual.sync_host(); 784*076ba34aSJunchao Zhang PetscInt Cd_nnz = Cdi_dual.view_host().data()[m]; 785*076ba34aSJunchao Zhang PetscInt Co_nnz = Coi_dual.view_host().data()[m]; 786*076ba34aSJunchao Zhang 787*076ba34aSJunchao Zhang /* With nnz, allocate a, j for Cd and Co */ 788*076ba34aSJunchao Zhang MatColIdxKokkosDualView Cdj_dual("j",Cd_nnz),Coj_dual("j",Co_nnz); 789*076ba34aSJunchao Zhang MatScalarKokkosDualView Cda_dual("a",Cd_nnz),Coa_dual("a",Co_nnz); 790*076ba34aSJunchao Zhang 791*076ba34aSJunchao Zhang /* Fill a, j of Cd and Co on device */ 792*076ba34aSJunchao Zhang MatColIdxKokkosView Cdj = Cdj_dual.view_device(),Coj = Coj_dual.view_device(); 793*076ba34aSJunchao Zhang MatScalarKokkosView Cda = Cda_dual.view_device(),Coa = Coa_dual.view_device(); 794*076ba34aSJunchao Zhang 795*076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(m, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 796*076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 797*076ba34aSJunchao Zhang PetscInt clen = Ci(i+1) - Ci(i); /* len of row i of C */ 798*076ba34aSJunchao Zhang PetscInt cdlen = Cdi(i+1) - Cdi(i); /* len of row i of Cd */ 799*076ba34aSJunchao Zhang PetscInt cdstart = Cdstart(i); /* [start, end) of row i of Cd in C */ 800*076ba34aSJunchao Zhang PetscInt cdend = cdstart + cdlen; 801*076ba34aSJunchao Zhang /* [0, clen) is cut into three blocks: [0, cdstart), [cdstart, cdend), [cdend, clen) */ 802*076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, clen), [&](PetscInt k) { 803*076ba34aSJunchao Zhang if (k < cdstart) { /* k in [0, cdstart) */ 804*076ba34aSJunchao Zhang Coa(Coi(i)+k) = Ca(Ci(i)+k); 805*076ba34aSJunchao Zhang Coj(Coi(i)+k) = Cj(Ci(i)+k); 806*076ba34aSJunchao Zhang } else if (k < cdend) { /* k in [cdstart, cdend) */ 807*076ba34aSJunchao Zhang Cda(Cdi(i)+(k-cdstart)) = Ca(Ci(i)+k); 808*076ba34aSJunchao Zhang Cdj(Cdi(i)+(k-cdstart)) = Cj(Ci(i)+k) - cstart; /* Use local col ids in Cdj */ 809*076ba34aSJunchao Zhang } else { /* k in [cdend, clen) */ 810*076ba34aSJunchao Zhang Coa(Coi(i)+k-cdlen) = Ca(Ci(i)+k); 811*076ba34aSJunchao Zhang Coj(Coi(i)+k-cdlen) = Cj(Ci(i)+k); 812*076ba34aSJunchao Zhang } 813*076ba34aSJunchao Zhang }); 814*076ba34aSJunchao Zhang }); 815*076ba34aSJunchao Zhang 816*076ba34aSJunchao Zhang Cdj_dual.modify_device(); 817*076ba34aSJunchao Zhang Cda_dual.modify_device(); 818*076ba34aSJunchao Zhang Coj_dual.modify_device(); 819*076ba34aSJunchao Zhang Coa_dual.modify_device(); 820*076ba34aSJunchao Zhang /* With a, i, j for Cd and Co, finally build Cd, Co and then C. Their offloadmask will be set in each's MatAssemblyEnd */ 821*076ba34aSJunchao Zhang auto cdkok = new Mat_SeqAIJKokkos(m,n,Cd_nnz,Cdi_dual,Cdj_dual,Cda_dual); 822*076ba34aSJunchao Zhang auto cokok = new Mat_SeqAIJKokkos(m,N,Co_nnz,Coi_dual,Coj_dual,Coa_dual); 823*076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,cdkok,&Cd);CHKERRQ(ierr); 824*076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,cokok,&Co);CHKERRQ(ierr); 825*076ba34aSJunchao Zhang ierr = MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(C,Cd,Co);CHKERRQ(ierr); /* Coj will be converted to local ids within */ 826*076ba34aSJunchao Zhang } 827*076ba34aSJunchao Zhang PetscFunctionReturn(0); 828*076ba34aSJunchao Zhang } 829*076ba34aSJunchao Zhang 830*076ba34aSJunchao Zhang /* MatSeqAIJCompactOutExtraColumns_SeqAIJKokkos - Compact a SEQAIJKOKKS matrix's global col ids. 831*076ba34aSJunchao Zhang 832*076ba34aSJunchao Zhang It is similar to MatSeqAIJCompactOutExtraColumns_SeqAIJ, but it applies to SEQAIJKOKKOS and returns the l2g map in Kokkos view. 833*076ba34aSJunchao Zhang 834*076ba34aSJunchao Zhang Input Parameters: 835*076ba34aSJunchao Zhang + C - the MATMPIAIJKOKKOS matrix, of size m,n,M,N 836*076ba34aSJunchao Zhang . reuse - indicate whether the matrix has called this function before 837*076ba34aSJunchao Zhang . csrmat - the KokkosCsrMatrix, of size m,N 838*076ba34aSJunchao Zhang - Cdoffset - when reuse == MAT_REUSE_MATRIX, it is an input parameter. For each row in csrmat, it stores the offset of the first 839*076ba34aSJunchao Zhang entry of the diag block of C in csrmat's j array. 840*076ba34aSJunchao Zhang 841*076ba34aSJunchao Zhang Output Parameters: 842*076ba34aSJunchao Zhang + C - the updated MATMPIAIJKOKKOS matrix 843*076ba34aSJunchao Zhang - Cdoffset - when reuse == MAT_INITIAL_MATRIX, it is an output parameter 844*076ba34aSJunchao Zhang 845*076ba34aSJunchao Zhang Notes: the input matrix's col ids and col size will be changed. 846*076ba34aSJunchao Zhang */ 847*076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJCompactOutExtraColumns_SeqAIJKokkos(Mat C,MatColIdxKokkosView& l2g) 848*076ba34aSJunchao Zhang { 849*076ba34aSJunchao Zhang PetscErrorCode ierr; 850*076ba34aSJunchao Zhang Mat_SeqAIJKokkos *ckok; 851*076ba34aSJunchao Zhang ISLocalToGlobalMapping l2gmap; 852*076ba34aSJunchao Zhang const PetscInt *garray; 853*076ba34aSJunchao Zhang PetscInt sz; 854*076ba34aSJunchao Zhang 855*076ba34aSJunchao Zhang PetscFunctionBegin; 856*076ba34aSJunchao Zhang /* Compact P_other's global col ids and col size. We do it since we guess with local ids KK might be more memory scalable */ 857*076ba34aSJunchao Zhang ierr = MatSeqAIJCompactOutExtraColumns_SeqAIJ(C,&l2gmap);CHKERRQ(ierr); 858*076ba34aSJunchao Zhang ckok = static_cast<Mat_SeqAIJKokkos*>(C->spptr); 859*076ba34aSJunchao Zhang ckok->j_dual.modify_host(); /* P_other's j is modified on host; we need to sync it on device */ 860*076ba34aSJunchao Zhang ckok->j_dual.sync_device(); 861*076ba34aSJunchao Zhang ckok->SetColSize(C->cmap->n); /* Update col size of the csrmat in spptr */ 862*076ba34aSJunchao Zhang 863*076ba34aSJunchao Zhang /* Build l2g -- the local to global mapping of C's cols */ 864*076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingGetIndices(l2gmap,&garray);CHKERRQ(ierr); 865*076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingGetSize(l2gmap,&sz);CHKERRQ(ierr); 866*076ba34aSJunchao Zhang if (C->cmap->n != sz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"matrix column size(%D) != l2g mapping size(%D)\n", C->cmap->n,sz); 867*076ba34aSJunchao Zhang 868*076ba34aSJunchao Zhang ConstMatColIdxKokkosViewHost tmp(garray,sz); 869*076ba34aSJunchao Zhang l2g = MatColIdxKokkosView("l2g",sz); 870*076ba34aSJunchao Zhang Kokkos::deep_copy(l2g,tmp); 871*076ba34aSJunchao Zhang 872*076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingRestoreIndices(l2gmap,&garray);CHKERRQ(ierr); 873*076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingDestroy(&l2gmap);CHKERRQ(ierr); 874*076ba34aSJunchao Zhang PetscFunctionReturn(0); 875*076ba34aSJunchao Zhang } 876*076ba34aSJunchao Zhang 877*076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AB - AB flavor of MatProductSymbolic_MPIAIJKokkos 878*076ba34aSJunchao Zhang 879*076ba34aSJunchao Zhang Input Parameters: 880*076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 881*076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 882*076ba34aSJunchao Zhang . B - an MPIAIJKOKKOS matrix 883*076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data when computing AB. Persist from symbolic to numeric operations. 884*076ba34aSJunchao Zhang 885*076ba34aSJunchao Zhang Notes: The local part of the result C is stored as mm->C_global, which is of type KokkosCsrMatrix and uses global col ids. 886*076ba34aSJunchao Zhang */ 887*076ba34aSJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AB(Mat_Product *product,Mat A,Mat B,MatMatStruct_AB *mm) 888*076ba34aSJunchao Zhang { 889*076ba34aSJunchao Zhang PetscErrorCode ierr; 890*076ba34aSJunchao Zhang Mat_MPIAIJ *a = static_cast<Mat_MPIAIJ*>(A->data); 891*076ba34aSJunchao Zhang Mat Ad = a->A,Ao = a->B; /* diag and offdiag of A */ 892*076ba34aSJunchao Zhang IS glob = NULL; 893*076ba34aSJunchao Zhang const PetscInt *garray; 894*076ba34aSJunchao Zhang PetscInt N = B->cmap->N,sz; 895*076ba34aSJunchao Zhang ConstMatColIdxKokkosView l2g1; /* two temp maps mapping local col ids to global ones */ 896*076ba34aSJunchao Zhang MatColIdxKokkosView l2g2; 897*076ba34aSJunchao Zhang Mat C1,C2; /* intermediate matrices */ 898*076ba34aSJunchao Zhang 899*076ba34aSJunchao Zhang PetscFunctionBegin; 900*076ba34aSJunchao Zhang /* C1 = Ad * B_local. B_local is a matrix got by merging Bd and Bo, and uses local col ids */ 901*076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_INITIAL_MATRIX,&glob,&mm->B_local);CHKERRQ(ierr); 902*076ba34aSJunchao Zhang ierr = MatProductCreate(Ad,mm->B_local,NULL,&C1);CHKERRQ(ierr); 903*076ba34aSJunchao Zhang ierr = MatProductSetType(C1,MATPRODUCT_AB);CHKERRQ(ierr); 904*076ba34aSJunchao Zhang ierr = MatProductSetFill(C1,product->fill);CHKERRQ(ierr); 905*076ba34aSJunchao Zhang C1->product->api_user = product->api_user; 906*076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C1);CHKERRQ(ierr); 907*076ba34aSJunchao Zhang if (!C1->ops->productsymbolic) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C1->product->type]); 908*076ba34aSJunchao Zhang ierr = (*C1->ops->productsymbolic)(C1);CHKERRQ(ierr); 909*076ba34aSJunchao Zhang 910*076ba34aSJunchao Zhang ierr = ISGetIndices(glob,&garray);CHKERRQ(ierr); 911*076ba34aSJunchao Zhang ierr = ISGetSize(glob,&sz);CHKERRQ(ierr); 912*076ba34aSJunchao Zhang const auto& tmp = ConstMatColIdxKokkosViewHost(garray,sz); /* wrap garray as a view */ 913*076ba34aSJunchao Zhang l2g1 = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),tmp); /* maybe just an alias to tmp, so we restore garray at the very end */ 914*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(C1,N,l2g1,mm->C1_global); 915*076ba34aSJunchao Zhang 916*076ba34aSJunchao Zhang /* C2 = Ao * B_other. B_other is a matrix consisting of needed rows of B gathered from other procs */ 917*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosBcast(mm->B_local,MAT_INITIAL_MATRIX,N,l2g1,a->Mvctx,mm->sf, 918*076ba34aSJunchao Zhang mm->abuf,mm->rows,mm->rowoffset,mm->B_other);CHKERRQ(ierr); 919*076ba34aSJunchao Zhang 920*076ba34aSJunchao Zhang /* Compact B_other to use local ids as we guess KK spgemm is more memroy scalable with that; We could skip the compaction to simplify code */ 921*076ba34aSJunchao Zhang ierr = MatSeqAIJCompactOutExtraColumns_SeqAIJKokkos(mm->B_other,l2g2);CHKERRQ(ierr); 922*076ba34aSJunchao Zhang ierr = MatProductCreate(Ao,mm->B_other,NULL,&C2);CHKERRQ(ierr); 923*076ba34aSJunchao Zhang ierr = MatProductSetType(C2,MATPRODUCT_AB);CHKERRQ(ierr); 924*076ba34aSJunchao Zhang ierr = MatProductSetFill(C2,product->fill);CHKERRQ(ierr); 925*076ba34aSJunchao Zhang C2->product->api_user = product->api_user; 926*076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C2);CHKERRQ(ierr); 927*076ba34aSJunchao Zhang if (!C2->ops->productsymbolic) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C2->product->type]); 928*076ba34aSJunchao Zhang ierr = (*C2->ops->productsymbolic)(C2);CHKERRQ(ierr); 929*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(C2,N,l2g2,mm->C2_global); 930*076ba34aSJunchao Zhang 931*076ba34aSJunchao Zhang /* C = C1 + C2. We actually use their global col ids versions in adding */ 932*076ba34aSJunchao Zhang mm->kh.create_spadd_handle(false); /* Input C1, C2 are NOT sorted, since B_local, B_other are not */ 933*076ba34aSJunchao Zhang KokkosSparse::spadd_symbolic(&mm->kh,mm->C1_global,mm->C2_global,mm->C_global); 934*076ba34aSJunchao Zhang /* Have to do numeric since spadd_symbolic does not really populate column indices of the result matrix */ 935*076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&mm->kh,(MatScalarType)1.0,mm->C1_global,(MatScalarType)1.0,mm->C2_global,mm->C_global); 936*076ba34aSJunchao Zhang 937*076ba34aSJunchao Zhang mm->C1 = C1; 938*076ba34aSJunchao Zhang mm->C2 = C2; 939*076ba34aSJunchao Zhang ierr = ISRestoreIndices(glob,&garray);CHKERRQ(ierr); 940*076ba34aSJunchao Zhang ierr = ISDestroy(&glob);CHKERRQ(ierr); 941*076ba34aSJunchao Zhang PetscFunctionReturn(0); 942*076ba34aSJunchao Zhang } 943*076ba34aSJunchao Zhang 944*076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AtB - A^tB flavor of MatProductSymbolic_MPIAIJKokkos 945*076ba34aSJunchao Zhang 946*076ba34aSJunchao Zhang Input Parameters: 947*076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 948*076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 949*076ba34aSJunchao Zhang . B - a SEQAIJKOKKOS matrix. It works as if A^t is multiplied by a parallel matrix made up of Bs on each rank. 950*076ba34aSJunchao Zhang . localB - Does B use local col ids? If false, then B is already in global col ids. 951*076ba34aSJunchao Zhang . N - col size of the "parallel B matrix". It implies B's global col ids are in range of [0,N) and N is the same across the communicator. 952*076ba34aSJunchao Zhang . l2g - If localB, then l2g maps B's local col ids to global ones. 953*076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data in AtB 954*076ba34aSJunchao Zhang 955*076ba34aSJunchao Zhang Notes: The local part of the result C is stored as mm->C_global, which is of type KokkosCsrMatrix and uses global col ids. 956*076ba34aSJunchao Zhang */ 957*076ba34aSJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AtB(Mat_Product *product,Mat A,Mat B,PetscBool localB,PetscInt N,const ConstMatColIdxKokkosView& l2g,MatMatStruct_AtB *mm) 958*076ba34aSJunchao Zhang { 959*076ba34aSJunchao Zhang PetscErrorCode ierr; 960*076ba34aSJunchao Zhang Mat_MPIAIJ *a = static_cast<Mat_MPIAIJ*>(A->data); 961*076ba34aSJunchao Zhang Mat Ad = a->A,Ao = a->B; /* diag and offdiag of A */ 962*076ba34aSJunchao Zhang Mat C1,C2; /* intermediate matrices */ 963*076ba34aSJunchao Zhang 964*076ba34aSJunchao Zhang PetscFunctionBegin; 965*076ba34aSJunchao Zhang /* C1 = Ad^t * B */ 966*076ba34aSJunchao Zhang ierr = MatProductCreate(Ad,B,NULL,&C1);CHKERRQ(ierr); 967*076ba34aSJunchao Zhang ierr = MatProductSetType(C1,MATPRODUCT_AtB);CHKERRQ(ierr); 968*076ba34aSJunchao Zhang ierr = MatProductSetFill(C1,product->fill);CHKERRQ(ierr); 969*076ba34aSJunchao Zhang C1->product->api_user = product->api_user; 970*076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C1);CHKERRQ(ierr); 971*076ba34aSJunchao Zhang if (!C1->ops->productsymbolic) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C1->product->type]); 972*076ba34aSJunchao Zhang ierr = (*C1->ops->productsymbolic)(C1);CHKERRQ(ierr); 973*076ba34aSJunchao Zhang 974*076ba34aSJunchao Zhang if (localB) {ierr = MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(C1,N,l2g,mm->C1_global);} 975*076ba34aSJunchao Zhang else mm->C1_global = static_cast<Mat_SeqAIJKokkos*>(C1->spptr)->csrmat; /* the csrmat already uses global col ids */ 976*076ba34aSJunchao Zhang 977*076ba34aSJunchao Zhang /* C2 = Ao^t * B */ 978*076ba34aSJunchao Zhang ierr = MatProductCreate(Ao,B,NULL,&C2);CHKERRQ(ierr); 979*076ba34aSJunchao Zhang ierr = MatProductSetType(C2,MATPRODUCT_AtB);CHKERRQ(ierr); 980*076ba34aSJunchao Zhang ierr = MatProductSetFill(C2,product->fill);CHKERRQ(ierr); 981*076ba34aSJunchao Zhang C2->product->api_user = product->api_user; 982*076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C2);CHKERRQ(ierr); 983*076ba34aSJunchao Zhang if (!C2->ops->productsymbolic) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C2->product->type]); 984*076ba34aSJunchao Zhang ierr = (*C2->ops->productsymbolic)(C2);CHKERRQ(ierr); 985*076ba34aSJunchao Zhang 986*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosReduce(C2,MAT_INITIAL_MATRIX,localB,N,l2g,a->Mvctx,mm->sf,mm->abuf, 987*076ba34aSJunchao Zhang mm->srcrowoffset,mm->dstrowoffset,mm->C2_global);CHKERRQ(ierr); 988*076ba34aSJunchao Zhang 989*076ba34aSJunchao Zhang mm->kh.create_spadd_handle(false); /* Input C1, C2 are NOT sorted, since B may be not */ 990*076ba34aSJunchao Zhang KokkosSparse::spadd_symbolic(&mm->kh,mm->C1_global,mm->C2_global,mm->C_global); 991*076ba34aSJunchao Zhang /* Have to do numeric since spadd_symbolic does not really populate column indices of the result matrix */ 992*076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&mm->kh,(MatScalarType)1.0,mm->C1_global,(MatScalarType)1.0,mm->C2_global,mm->C_global); 993*076ba34aSJunchao Zhang mm->C1 = C1; 994*076ba34aSJunchao Zhang mm->C2 = C2; 995*076ba34aSJunchao Zhang PetscFunctionReturn(0); 996*076ba34aSJunchao Zhang } 997*076ba34aSJunchao Zhang 998*076ba34aSJunchao Zhang PetscErrorCode MatProductNumeric_MPIAIJKokkos(Mat C) 999*076ba34aSJunchao Zhang { 1000*076ba34aSJunchao Zhang PetscErrorCode ierr; 1001*076ba34aSJunchao Zhang Mat_Product *product = C->product; 1002*076ba34aSJunchao Zhang MatProductType ptype; 1003*076ba34aSJunchao Zhang MatProductData_MPIAIJKokkos *mmdata; 1004*076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 1005*076ba34aSJunchao Zhang MatMatStruct_AB *ab; 1006*076ba34aSJunchao Zhang MatMatStruct_AtB *atb; 1007*076ba34aSJunchao Zhang Mat A,B,Ad,Ao,Bd,Bo; 1008*076ba34aSJunchao Zhang const MatScalarType one = 1.0; /* Not use literal 1.0 directly, to avoid wrong template instantiation in KokkosSparse::spadd_numeric */ 1009*076ba34aSJunchao Zhang 1010*076ba34aSJunchao Zhang PetscFunctionBegin; 1011*076ba34aSJunchao Zhang MatCheckProduct(C,1); 1012*076ba34aSJunchao Zhang mmdata = static_cast<MatProductData_MPIAIJKokkos*>(product->data); 1013*076ba34aSJunchao Zhang ptype = product->type; 1014*076ba34aSJunchao Zhang A = product->A; 1015*076ba34aSJunchao Zhang B = product->B; 1016*076ba34aSJunchao Zhang Ad = static_cast<Mat_MPIAIJ*>(A->data)->A; 1017*076ba34aSJunchao Zhang Ao = static_cast<Mat_MPIAIJ*>(A->data)->B; 1018*076ba34aSJunchao Zhang Bd = static_cast<Mat_MPIAIJ*>(B->data)->A; 1019*076ba34aSJunchao Zhang Bo = static_cast<Mat_MPIAIJ*>(B->data)->B; 1020*076ba34aSJunchao Zhang 1021*076ba34aSJunchao Zhang if (mmdata->reusesym) { /* We reached here through e.g., MatMatMult(A,B,MAT_INITIAL_MATRIX,..,C), where symbolic/numeric are combined */ 1022*076ba34aSJunchao Zhang mmdata->reusesym = PETSC_FALSE; /* So that next time when user calls MatMatMult(E,F,MAT_REUSE_MATRIX,..,C), we still do numeric */ 1023*076ba34aSJunchao Zhang ab = mmdata->mmAB; 1024*076ba34aSJunchao Zhang atb = mmdata->mmAtB; 1025*076ba34aSJunchao Zhang if (ab) { 1026*076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(ab->C1->product->data)->reusesym = PETSC_FALSE; 1027*076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(ab->C2->product->data)->reusesym = PETSC_FALSE; 1028*076ba34aSJunchao Zhang } 1029*076ba34aSJunchao Zhang if (atb) { 1030*076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(atb->C1->product->data)->reusesym = PETSC_FALSE; 1031*076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(atb->C2->product->data)->reusesym = PETSC_FALSE; 1032*076ba34aSJunchao Zhang } 1033*076ba34aSJunchao Zhang PetscFunctionReturn(0); 1034*076ba34aSJunchao Zhang } 1035*076ba34aSJunchao Zhang 1036*076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 1037*076ba34aSJunchao Zhang ab = mmdata->mmAB; 1038*076ba34aSJunchao Zhang /* C1 = Ad * B_local */ 1039*076ba34aSJunchao Zhang if (!ab->C1->ops->productnumeric || !ab->C2->ops->productnumeric) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing numeric op for MATPRODUCT_AB"); 1040*076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_REUSE_MATRIX,NULL/*glob*/,&ab->B_local);CHKERRQ(ierr); 1041*076ba34aSJunchao Zhang if (ab->C1->product->B != ab->B_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AB, internal mat product matrix C1->B has unexpectedly changed"); 1042*076ba34aSJunchao Zhang if (ab->C1->product->A != Ad) {ierr = MatProductReplaceMats(Ad,NULL,NULL,ab->C1);CHKERRQ(ierr);} 1043*076ba34aSJunchao Zhang ierr = (*ab->C1->ops->productnumeric)(ab->C1);CHKERRQ(ierr); 1044*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosBcast(ab->B_local,MAT_REUSE_MATRIX,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,ab->sf, 1045*076ba34aSJunchao Zhang ab->abuf,ab->rows,ab->rowoffset,ab->B_other);CHKERRQ(ierr); 1046*076ba34aSJunchao Zhang /* C2 = Ao * B_other */ 1047*076ba34aSJunchao Zhang if (ab->C2->product->B != ab->B_other) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AB, internal mat product matrix C2->B has unexpectedly changed"); 1048*076ba34aSJunchao Zhang if (ab->C1->product->A != Ao) {ierr = MatProductReplaceMats(Ao,NULL,NULL,ab->C2);CHKERRQ(ierr);} 1049*076ba34aSJunchao Zhang ierr = (*ab->C2->ops->productnumeric)(ab->C2);CHKERRQ(ierr); 1050*076ba34aSJunchao Zhang /* C = C1_global + C2_global */ 1051*076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&ab->kh,one,ab->C1_global,one,ab->C2_global,ab->C_global); 1052*076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(ab); 1053*076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 1054*076ba34aSJunchao Zhang atb = mmdata->mmAtB; 1055*076ba34aSJunchao Zhang if (!atb->C1->ops->productnumeric || !atb->C2->ops->productnumeric) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing numeric op for MATPRODUCT_AtB"); 1056*076ba34aSJunchao Zhang /* C1 = Ad^t * B_local */ 1057*076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_REUSE_MATRIX,NULL/*glob*/,&atb->B_local);CHKERRQ(ierr); 1058*076ba34aSJunchao Zhang if (atb->C1->product->B != atb->B_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AtB, internal mat product matrix C1->B has unexpectedly changed"); 1059*076ba34aSJunchao Zhang if (atb->C1->product->A != Ad) {ierr = MatProductReplaceMats(Ad,NULL,NULL,atb->C1);CHKERRQ(ierr);} 1060*076ba34aSJunchao Zhang ierr = (*atb->C1->ops->productnumeric)(atb->C1);CHKERRQ(ierr); 1061*076ba34aSJunchao Zhang 1062*076ba34aSJunchao Zhang /* C2 = Ao^t * B_local */ 1063*076ba34aSJunchao Zhang if (atb->C2->product->B != atb->B_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AtB, internal mat product matrix C2->B has unexpectedly changed"); 1064*076ba34aSJunchao Zhang if (atb->C2->product->A != Ao) {ierr = MatProductReplaceMats(Ao,NULL,NULL,atb->C2);CHKERRQ(ierr);} 1065*076ba34aSJunchao Zhang ierr = (*atb->C2->ops->productnumeric)(atb->C2);CHKERRQ(ierr); 1066*076ba34aSJunchao Zhang /* Form C2_global */ 1067*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosReduce(atb->C2,MAT_REUSE_MATRIX,PETSC_TRUE,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,atb->sf, 1068*076ba34aSJunchao Zhang atb->abuf,atb->srcrowoffset,atb->dstrowoffset,atb->C2_global);CHKERRQ(ierr); 1069*076ba34aSJunchao Zhang /* C = C1_global + C2_global */ 1070*076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&atb->kh,one,atb->C1_global,one,atb->C2_global,atb->C_global); 1071*076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1072*076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { /* BtAB */ 1073*076ba34aSJunchao Zhang ab = mmdata->mmAB; 1074*076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_REUSE_MATRIX,NULL/*glob*/,&ab->B_local);CHKERRQ(ierr); 1075*076ba34aSJunchao Zhang 1076*076ba34aSJunchao Zhang /* ab->C1 = Ad * B_local */ 1077*076ba34aSJunchao Zhang if (ab->C1->product->B != ab->B_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_PtAP, internal mat product matrix ab->C1->B has unexpectedly changed"); 1078*076ba34aSJunchao Zhang if (ab->C1->product->A != Ad) {ierr = MatProductReplaceMats(Ad,NULL,NULL,ab->C1);CHKERRQ(ierr);} 1079*076ba34aSJunchao Zhang ierr = (*ab->C1->ops->productnumeric)(ab->C1);CHKERRQ(ierr); 1080*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosBcast(ab->B_local,MAT_REUSE_MATRIX,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,ab->sf, 1081*076ba34aSJunchao Zhang ab->abuf,ab->rows,ab->rowoffset,ab->B_other);CHKERRQ(ierr); 1082*076ba34aSJunchao Zhang /* ab->C2 = Ao * B_other */ 1083*076ba34aSJunchao Zhang if (ab->C2->product->A != Ao) {ierr = MatProductReplaceMats(Ao,NULL,NULL,ab->C2);CHKERRQ(ierr);} 1084*076ba34aSJunchao Zhang ierr = (*ab->C2->ops->productnumeric)(ab->C2);CHKERRQ(ierr); /* C2 = Ao * B_other */ 1085*076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&ab->kh,one,ab->C1_global,one,ab->C2_global,ab->C_global); 1086*076ba34aSJunchao Zhang 1087*076ba34aSJunchao Zhang /* atb->C1 = Bd^t * ab->C_petsc */ 1088*076ba34aSJunchao Zhang atb = mmdata->mmAtB; 1089*076ba34aSJunchao Zhang if (atb->C1->product->B != ab->C_petsc) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_PtAP, internal mat product matrix atb->C1->B has unexpectedly changed"); 1090*076ba34aSJunchao Zhang if (atb->C1->product->A != Bd) {ierr = MatProductReplaceMats(Bd,NULL,NULL,atb->C1);CHKERRQ(ierr);} 1091*076ba34aSJunchao Zhang ierr = (*atb->C1->ops->productnumeric)(atb->C1);CHKERRQ(ierr); 1092*076ba34aSJunchao Zhang /* atb->C2 = Bo^t * ab->C_petsc */ 1093*076ba34aSJunchao Zhang if (atb->C2->product->A != Bo) {ierr = MatProductReplaceMats(Bo,NULL,NULL,atb->C2);CHKERRQ(ierr);} 1094*076ba34aSJunchao Zhang ierr = (*atb->C2->ops->productnumeric)(atb->C2);CHKERRQ(ierr); 1095*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosReduce(atb->C2,MAT_REUSE_MATRIX,PETSC_FALSE,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,atb->sf, 1096*076ba34aSJunchao Zhang atb->abuf,atb->srcrowoffset,atb->dstrowoffset,atb->C2_global);CHKERRQ(ierr); 1097*076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&atb->kh,one,atb->C1_global,one,atb->C2_global,atb->C_global); 1098*076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1099*076ba34aSJunchao Zhang } 1100*076ba34aSJunchao Zhang /* Split C_global to form C */ 1101*076ba34aSJunchao Zhang ierr = MatSetMPIAIJKokkosWithGlobalCSRMatrix(C,MAT_REUSE_MATRIX,mm->C_global,mm->Cdstart);CHKERRQ(ierr); 1102*076ba34aSJunchao Zhang PetscFunctionReturn(0); 1103*076ba34aSJunchao Zhang } 1104*076ba34aSJunchao Zhang 1105*076ba34aSJunchao Zhang PetscErrorCode MatProductSymbolic_MPIAIJKokkos(Mat C) 1106*076ba34aSJunchao Zhang { 1107*076ba34aSJunchao Zhang PetscErrorCode ierr; 1108*076ba34aSJunchao Zhang Mat A,B; 1109*076ba34aSJunchao Zhang Mat_Product *product = C->product; 1110*076ba34aSJunchao Zhang MatProductType ptype; 1111*076ba34aSJunchao Zhang MatProductData_MPIAIJKokkos *mmdata; 1112*076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 1113*076ba34aSJunchao Zhang IS glob = NULL; 1114*076ba34aSJunchao Zhang const PetscInt *garray; 1115*076ba34aSJunchao Zhang PetscInt m,n,M,N,sz; 1116*076ba34aSJunchao Zhang ConstMatColIdxKokkosView l2g; /* map local col ids to global ones */ 1117*076ba34aSJunchao Zhang 1118*076ba34aSJunchao Zhang PetscFunctionBegin; 1119*076ba34aSJunchao Zhang MatCheckProduct(C,1); 1120*076ba34aSJunchao Zhang if (product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 1121*076ba34aSJunchao Zhang ptype = product->type; 1122*076ba34aSJunchao Zhang A = product->A; 1123*076ba34aSJunchao Zhang B = product->B; 1124*076ba34aSJunchao Zhang 1125*076ba34aSJunchao Zhang switch (ptype) { 1126*076ba34aSJunchao Zhang case MATPRODUCT_AB: m = A->rmap->n; n = B->cmap->n; M = A->rmap->N; N = B->cmap->N; break; 1127*076ba34aSJunchao Zhang case MATPRODUCT_AtB: m = A->cmap->n; n = B->cmap->n; M = A->cmap->N; N = B->cmap->N; break; 1128*076ba34aSJunchao Zhang case MATPRODUCT_PtAP: m = B->cmap->n; n = B->cmap->n; M = B->cmap->N; N = B->cmap->N; break; /* BtAB */ 1129*076ba34aSJunchao Zhang default: SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Not for product type %s",MatProductTypes[ptype]); 1130*076ba34aSJunchao Zhang } 1131*076ba34aSJunchao Zhang 1132*076ba34aSJunchao Zhang ierr = MatSetSizes(C,m,n,M,N);CHKERRQ(ierr); 1133*076ba34aSJunchao Zhang ierr = PetscLayoutSetUp(C->rmap);CHKERRQ(ierr); 1134*076ba34aSJunchao Zhang ierr = PetscLayoutSetUp(C->cmap);CHKERRQ(ierr); 1135*076ba34aSJunchao Zhang ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 1136*076ba34aSJunchao Zhang 1137*076ba34aSJunchao Zhang mmdata = new MatProductData_MPIAIJKokkos(); 1138*076ba34aSJunchao Zhang mmdata->reusesym = product->api_user; 1139*076ba34aSJunchao Zhang 1140*076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 1141*076ba34aSJunchao Zhang mmdata->mmAB = new MatMatStruct_AB(); 1142*076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AB(product,A,B,mmdata->mmAB);CHKERRQ(ierr); 1143*076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(mmdata->mmAB); 1144*076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 1145*076ba34aSJunchao Zhang mmdata->mmAtB = new MatMatStruct_AtB(); 1146*076ba34aSJunchao Zhang auto atb = mmdata->mmAtB; 1147*076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_INITIAL_MATRIX,&glob,&atb->B_local);CHKERRQ(ierr); 1148*076ba34aSJunchao Zhang ierr = ISGetIndices(glob,&garray);CHKERRQ(ierr); 1149*076ba34aSJunchao Zhang ierr = ISGetSize(glob,&sz);CHKERRQ(ierr); 1150*076ba34aSJunchao Zhang l2g = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),ConstMatColIdxKokkosViewHost(garray,sz)); 1151*076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AtB(product,A,atb->B_local,PETSC_TRUE,N,l2g,atb);CHKERRQ(ierr); 1152*076ba34aSJunchao Zhang ierr = ISRestoreIndices(glob,&garray);CHKERRQ(ierr); 1153*076ba34aSJunchao Zhang ierr = ISDestroy(&glob);CHKERRQ(ierr); 1154*076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1155*076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { /* BtAB */ 1156*076ba34aSJunchao Zhang mmdata->mmAB = new MatMatStruct_AB(); /* tmp=A*B */ 1157*076ba34aSJunchao Zhang mmdata->mmAtB = new MatMatStruct_AtB(); /* C=B^t*tmp */ 1158*076ba34aSJunchao Zhang auto ab = mmdata->mmAB; 1159*076ba34aSJunchao Zhang auto atb = mmdata->mmAtB; 1160*076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AB(product,A,B,ab);CHKERRQ(ierr); 1161*076ba34aSJunchao Zhang auto tmp = new Mat_SeqAIJKokkos(ab->C_global); /* Memory will be owned by ab->C_petsc */ 1162*076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,tmp,&ab->C_petsc);CHKERRQ(ierr); 1163*076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AtB(product,B,ab->C_petsc,PETSC_FALSE,N,l2g/*not used*/,atb);CHKERRQ(ierr); 1164*076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1165*076ba34aSJunchao Zhang } 1166*076ba34aSJunchao Zhang /* Split the C_global into petsc A, B format */ 1167*076ba34aSJunchao Zhang ierr = MatSetMPIAIJKokkosWithGlobalCSRMatrix(C,MAT_INITIAL_MATRIX,mm->C_global,mm->Cdstart);CHKERRQ(ierr); 1168*076ba34aSJunchao Zhang C->product->data = mmdata; 1169*076ba34aSJunchao Zhang C->product->destroy = MatProductDataDestroy_MPIAIJKokkos; 1170*076ba34aSJunchao Zhang C->ops->productnumeric = MatProductNumeric_MPIAIJKokkos; 1171*076ba34aSJunchao Zhang PetscFunctionReturn(0); 1172*076ba34aSJunchao Zhang } 1173*076ba34aSJunchao Zhang 1174*076ba34aSJunchao Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJKokkos(Mat mat) 1175*076ba34aSJunchao Zhang { 1176*076ba34aSJunchao Zhang PetscErrorCode ierr; 1177*076ba34aSJunchao Zhang Mat_Product *product = mat->product; 1178*076ba34aSJunchao Zhang PetscBool match = PETSC_FALSE; 1179*076ba34aSJunchao Zhang PetscBool usecpu = PETSC_FALSE; 1180*076ba34aSJunchao Zhang 1181*076ba34aSJunchao Zhang PetscFunctionBegin; 1182*076ba34aSJunchao Zhang MatCheckProduct(mat,1); 1183*076ba34aSJunchao Zhang if (!product->A->boundtocpu && !product->B->boundtocpu) { 1184*076ba34aSJunchao Zhang ierr = PetscObjectTypeCompare((PetscObject)product->B,((PetscObject)product->A)->type_name,&match);CHKERRQ(ierr); 1185*076ba34aSJunchao Zhang } 1186*076ba34aSJunchao Zhang if (match) { /* we can always fallback to the CPU if requested */ 1187*076ba34aSJunchao Zhang switch (product->type) { 1188*076ba34aSJunchao Zhang case MATPRODUCT_AB: 1189*076ba34aSJunchao Zhang if (product->api_user) { 1190*076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatMatMult","Mat");CHKERRQ(ierr); 1191*076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matmatmult_backend_cpu","Use CPU code","MatMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1192*076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1193*076ba34aSJunchao Zhang } else { 1194*076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatProduct_AB","Mat");CHKERRQ(ierr); 1195*076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matproduct_ab_backend_cpu","Use CPU code","MatMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1196*076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1197*076ba34aSJunchao Zhang } 1198*076ba34aSJunchao Zhang break; 1199*076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1200*076ba34aSJunchao Zhang if (product->api_user) { 1201*076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatTransposeMatMult","Mat");CHKERRQ(ierr); 1202*076ba34aSJunchao Zhang ierr = PetscOptionsBool("-mattransposematmult_backend_cpu","Use CPU code","MatTransposeMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1203*076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1204*076ba34aSJunchao Zhang } else { 1205*076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatProduct_AtB","Mat");CHKERRQ(ierr); 1206*076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matproduct_atb_backend_cpu","Use CPU code","MatTransposeMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1207*076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1208*076ba34aSJunchao Zhang } 1209*076ba34aSJunchao Zhang break; 1210*076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1211*076ba34aSJunchao Zhang if (product->api_user) { 1212*076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatPtAP","Mat");CHKERRQ(ierr); 1213*076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matptap_backend_cpu","Use CPU code","MatPtAP",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1214*076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1215*076ba34aSJunchao Zhang } else { 1216*076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatProduct_PtAP","Mat");CHKERRQ(ierr); 1217*076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matproduct_ptap_backend_cpu","Use CPU code","MatPtAP",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1218*076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1219*076ba34aSJunchao Zhang } 1220*076ba34aSJunchao Zhang break; 1221*076ba34aSJunchao Zhang default: 1222*076ba34aSJunchao Zhang break; 1223*076ba34aSJunchao Zhang } 1224*076ba34aSJunchao Zhang match = (PetscBool)!usecpu; 1225*076ba34aSJunchao Zhang } 1226*076ba34aSJunchao Zhang if (match) { 1227*076ba34aSJunchao Zhang switch (product->type) { 1228*076ba34aSJunchao Zhang case MATPRODUCT_AB: 1229*076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1230*076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1231*076ba34aSJunchao Zhang mat->ops->productsymbolic = MatProductSymbolic_MPIAIJKokkos; 1232*076ba34aSJunchao Zhang break; 1233*076ba34aSJunchao Zhang default: 1234*076ba34aSJunchao Zhang break; 1235*076ba34aSJunchao Zhang } 1236*076ba34aSJunchao Zhang } 1237*076ba34aSJunchao Zhang /* fallback to MPIAIJ ops */ 1238*076ba34aSJunchao Zhang if (!mat->ops->productsymbolic) { 1239*076ba34aSJunchao Zhang ierr = MatProductSetFromOptions_MPIAIJ(mat);CHKERRQ(ierr); 1240*076ba34aSJunchao Zhang } 1241*076ba34aSJunchao Zhang PetscFunctionReturn(0); 1242*076ba34aSJunchao Zhang } 1243*076ba34aSJunchao Zhang 1244*076ba34aSJunchao Zhang PetscErrorCode MatDestroy_MPIAIJKokkos(Mat A) 1245*076ba34aSJunchao Zhang { 1246*076ba34aSJunchao Zhang PetscErrorCode ierr; 1247*076ba34aSJunchao Zhang 1248*076ba34aSJunchao Zhang PetscFunctionBegin; 1249*076ba34aSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1250*076ba34aSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJGetLocalMatMerge_C",NULL);CHKERRQ(ierr); 1251*076ba34aSJunchao Zhang ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr); 1252*076ba34aSJunchao Zhang PetscFunctionReturn(0); 1253*076ba34aSJunchao Zhang } 1254*076ba34aSJunchao Zhang 12558c3ff71bSJunchao Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat A, MatType mtype, MatReuse reuse, Mat* newmat) 12568c3ff71bSJunchao Zhang { 12578c3ff71bSJunchao Zhang PetscErrorCode ierr; 12588c3ff71bSJunchao Zhang Mat B; 1259*076ba34aSJunchao Zhang Mat_MPIAIJ *a; 12608c3ff71bSJunchao Zhang 12618c3ff71bSJunchao Zhang PetscFunctionBegin; 12628c3ff71bSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 12638c3ff71bSJunchao Zhang ierr = MatDuplicate(A,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 12648c3ff71bSJunchao Zhang } else if (reuse == MAT_REUSE_MATRIX) { 12658c3ff71bSJunchao Zhang ierr = MatCopy(A,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 12668c3ff71bSJunchao Zhang } 12678c3ff71bSJunchao Zhang B = *newmat; 12688c3ff71bSJunchao Zhang 12696f3d89d0SStefano Zampini B->boundtocpu = PETSC_FALSE; 12708c3ff71bSJunchao Zhang ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 12718c3ff71bSJunchao Zhang ierr = PetscStrallocpy(VECKOKKOS,&B->defaultvectype);CHKERRQ(ierr); 12723d0639e7SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIAIJKOKKOS);CHKERRQ(ierr); 12738c3ff71bSJunchao Zhang 1274*076ba34aSJunchao Zhang a = static_cast<Mat_MPIAIJ*>(A->data); 1275*076ba34aSJunchao Zhang if (a->A) {ierr = MatSetType(a->A,MATSEQAIJKOKKOS);CHKERRQ(ierr);} 1276*076ba34aSJunchao Zhang if (a->B) {ierr = MatSetType(a->B,MATSEQAIJKOKKOS);CHKERRQ(ierr);} 1277*076ba34aSJunchao Zhang if (a->lvec) {ierr = VecSetType(a->lvec,VECSEQKOKKOS);CHKERRQ(ierr);} 1278*076ba34aSJunchao Zhang 12798c3ff71bSJunchao Zhang B->ops->assemblyend = MatAssemblyEnd_MPIAIJKokkos; 12808c3ff71bSJunchao Zhang B->ops->mult = MatMult_MPIAIJKokkos; 12818c3ff71bSJunchao Zhang B->ops->multadd = MatMultAdd_MPIAIJKokkos; 12828c3ff71bSJunchao Zhang B->ops->multtranspose = MatMultTranspose_MPIAIJKokkos; 1283*076ba34aSJunchao Zhang B->ops->productsetfromoptions = MatProductSetFromOptions_MPIAIJKokkos; 1284*076ba34aSJunchao Zhang B->ops->destroy = MatDestroy_MPIAIJKokkos; 12858c3ff71bSJunchao Zhang 12863d0639e7SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIAIJSetPreallocation_C",MatMPIAIJSetPreallocation_MPIAIJKokkos);CHKERRQ(ierr); 1287*076ba34aSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJGetLocalMatMerge_C",MatMPIAIJGetLocalMatMerge_MPIAIJKokkos);CHKERRQ(ierr); 12888c3ff71bSJunchao Zhang PetscFunctionReturn(0); 12898c3ff71bSJunchao Zhang } 12908c3ff71bSJunchao Zhang 12918c3ff71bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJKokkos(Mat A) 12928c3ff71bSJunchao Zhang { 12938c3ff71bSJunchao Zhang PetscErrorCode ierr; 12948c3ff71bSJunchao Zhang 12958c3ff71bSJunchao Zhang PetscFunctionBegin; 12968c3ff71bSJunchao Zhang ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr); 12978c3ff71bSJunchao Zhang ierr = MatCreate_MPIAIJ(A);CHKERRQ(ierr); 12988c3ff71bSJunchao Zhang ierr = MatConvert_MPIAIJ_MPIAIJKokkos(A,MATMPIAIJKOKKOS,MAT_INPLACE_MATRIX,&A);CHKERRQ(ierr); 12998c3ff71bSJunchao Zhang PetscFunctionReturn(0); 13008c3ff71bSJunchao Zhang } 13018c3ff71bSJunchao Zhang 13028c3ff71bSJunchao Zhang /*@C 13038c3ff71bSJunchao Zhang MatCreateAIJKokkos - Creates a sparse matrix in AIJ (compressed row) format 13048c3ff71bSJunchao Zhang (the default parallel PETSc format). This matrix will ultimately pushed down 13058c3ff71bSJunchao Zhang to Kokkos for calculations. For good matrix 13068c3ff71bSJunchao Zhang assembly performance the user should preallocate the matrix storage by setting 13078c3ff71bSJunchao Zhang the parameter nz (or the array nnz). By setting these parameters accurately, 13088c3ff71bSJunchao Zhang performance during matrix assembly can be increased by more than a factor of 50. 13098c3ff71bSJunchao Zhang 13108c3ff71bSJunchao Zhang Collective 13118c3ff71bSJunchao Zhang 13128c3ff71bSJunchao Zhang Input Parameters: 13138c3ff71bSJunchao Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 13148c3ff71bSJunchao Zhang . m - number of rows 13158c3ff71bSJunchao Zhang . n - number of columns 13168c3ff71bSJunchao Zhang . nz - number of nonzeros per row (same for all rows) 13178c3ff71bSJunchao Zhang - nnz - array containing the number of nonzeros in the various rows 13188c3ff71bSJunchao Zhang (possibly different for each row) or NULL 13198c3ff71bSJunchao Zhang 13208c3ff71bSJunchao Zhang Output Parameter: 13218c3ff71bSJunchao Zhang . A - the matrix 13228c3ff71bSJunchao Zhang 13238c3ff71bSJunchao Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 13248c3ff71bSJunchao Zhang MatXXXXSetPreallocation() paradigm instead of this routine directly. 13258c3ff71bSJunchao Zhang [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 13268c3ff71bSJunchao Zhang 13278c3ff71bSJunchao Zhang Notes: 13288c3ff71bSJunchao Zhang If nnz is given then nz is ignored 13298c3ff71bSJunchao Zhang 13308c3ff71bSJunchao Zhang The AIJ format (also called the Yale sparse matrix format or 13318c3ff71bSJunchao Zhang compressed row storage), is fully compatible with standard Fortran 77 13328c3ff71bSJunchao Zhang storage. That is, the stored row and column indices can begin at 13338c3ff71bSJunchao Zhang either one (as in Fortran) or zero. See the users' manual for details. 13348c3ff71bSJunchao Zhang 13358c3ff71bSJunchao Zhang Specify the preallocated storage with either nz or nnz (not both). 13368c3ff71bSJunchao Zhang Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 13378c3ff71bSJunchao Zhang allocation. For large problems you MUST preallocate memory or you 13388c3ff71bSJunchao Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 13398c3ff71bSJunchao Zhang 13408c3ff71bSJunchao Zhang By default, this format uses inodes (identical nodes) when possible, to 13418c3ff71bSJunchao Zhang improve numerical efficiency of matrix-vector products and solves. We 13428c3ff71bSJunchao Zhang search for consecutive rows with the same nonzero structure, thereby 13438c3ff71bSJunchao Zhang reusing matrix information to achieve increased efficiency. 13448c3ff71bSJunchao Zhang 13458c3ff71bSJunchao Zhang Level: intermediate 13468c3ff71bSJunchao Zhang 13478c3ff71bSJunchao Zhang .seealso: MatCreate(), MatCreateAIJ(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ(), MATMPIAIJKOKKOS, MATAIJKokkos 13488c3ff71bSJunchao Zhang @*/ 13498c3ff71bSJunchao Zhang PetscErrorCode MatCreateAIJKokkos(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 13508c3ff71bSJunchao Zhang { 13518c3ff71bSJunchao Zhang PetscErrorCode ierr; 13528c3ff71bSJunchao Zhang PetscMPIInt size; 13538c3ff71bSJunchao Zhang 13548c3ff71bSJunchao Zhang PetscFunctionBegin; 13558c3ff71bSJunchao Zhang ierr = MatCreate(comm,A);CHKERRQ(ierr); 13568c3ff71bSJunchao Zhang ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1357ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 13588c3ff71bSJunchao Zhang if (size > 1) { 13598c3ff71bSJunchao Zhang ierr = MatSetType(*A,MATMPIAIJKOKKOS);CHKERRQ(ierr); 13608c3ff71bSJunchao Zhang ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 13618c3ff71bSJunchao Zhang } else { 13628c3ff71bSJunchao Zhang ierr = MatSetType(*A,MATSEQAIJKOKKOS);CHKERRQ(ierr); 13638c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr); 13648c3ff71bSJunchao Zhang } 13658c3ff71bSJunchao Zhang PetscFunctionReturn(0); 13668c3ff71bSJunchao Zhang } 13678c3ff71bSJunchao Zhang 1368a587d139SMark // get GPU pointer to stripped down Mat. For both Seq and MPI Mat. 1369042217e8SBarry Smith PetscErrorCode MatKokkosGetDeviceMatWrite(Mat A, PetscSplitCSRDataStructure *B) 1370a587d139SMark { 1371a587d139SMark PetscMPIInt size,rank; 1372a587d139SMark MPI_Comm comm; 1373a587d139SMark PetscErrorCode ierr; 1374042217e8SBarry Smith PetscSplitCSRDataStructure d_mat=NULL; 1375a587d139SMark 1376a587d139SMark PetscFunctionBegin; 1377a587d139SMark ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 137855b25c41SPierre Jolivet ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 137955b25c41SPierre Jolivet ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 1380a587d139SMark if (size == 1) { 1381a587d139SMark ierr = MatSeqAIJKokkosGetDeviceMat(A,&d_mat);CHKERRQ(ierr); 1382a587d139SMark } else { 1383a587d139SMark Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 1384a587d139SMark ierr = MatSeqAIJKokkosGetDeviceMat(aij->A,&d_mat);CHKERRQ(ierr); 1385a587d139SMark } 1386a587d139SMark // act like MatSetValues because not called on host 1387a587d139SMark if (A->assembled) { 1388a587d139SMark if (A->was_assembled) { 1389a587d139SMark ierr = PetscInfo(A,"Assemble more than once already\n");CHKERRQ(ierr); 1390a587d139SMark } 1391a587d139SMark A->was_assembled = PETSC_TRUE; // this is done (lazy) in MatAssemble but we are not calling it anymore - done in AIJ AssemblyEnd, need here? 1392a587d139SMark } else { 1393a587d139SMark ierr = PetscInfo1(A,"Warning !assemble ??? assembled=%D\n",A->assembled);CHKERRQ(ierr); 1394a587d139SMark // SETERRQ(comm,PETSC_ERR_SUP,"Need assemble matrix"); 1395a587d139SMark } 1396a587d139SMark if (!d_mat) { 1397042217e8SBarry Smith struct _n_SplitCSRMat h_mat; /* host container */ 1398a587d139SMark Mat_SeqAIJKokkos *aijkokA; 1399a587d139SMark Mat_SeqAIJ *jaca; 1400a587d139SMark PetscInt n = A->rmap->n, nnz; 1401a587d139SMark Mat Amat; 1402042217e8SBarry Smith PetscInt *colmap; 1403042217e8SBarry Smith 1404042217e8SBarry Smith /* create and copy h_mat */ 1405a587d139SMark ierr = PetscInfo(A,"Create device matrix in Kokkos\n");CHKERRQ(ierr); 1406a587d139SMark if (size == 1) { 1407a587d139SMark Amat = A; 1408a587d139SMark jaca = (Mat_SeqAIJ*)A->data; 1409a587d139SMark h_mat.rstart = 0; h_mat.rend = A->rmap->n; 1410a587d139SMark h_mat.cstart = 0; h_mat.cend = A->cmap->n; 1411a587d139SMark h_mat.offdiag.i = h_mat.offdiag.j = NULL; 1412a587d139SMark h_mat.offdiag.a = NULL; 1413a587d139SMark aijkokA = static_cast<Mat_SeqAIJKokkos*>(A->spptr); 1414a587d139SMark aijkokA->i_uncompressed_d = NULL; 1415a587d139SMark aijkokA->colmap_d = NULL; 1416a587d139SMark } else { 1417a587d139SMark Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 1418a587d139SMark Mat_SeqAIJ *jacb = (Mat_SeqAIJ*)aij->B->data; 1419a587d139SMark PetscInt ii; 1420a587d139SMark Mat_SeqAIJKokkos *aijkokB; 1421042217e8SBarry Smith 1422a587d139SMark Amat = aij->A; 1423a587d139SMark aijkokA = static_cast<Mat_SeqAIJKokkos*>(aij->A->spptr); 1424a587d139SMark aijkokB = static_cast<Mat_SeqAIJKokkos*>(aij->B->spptr); 1425a587d139SMark aijkokA->i_uncompressed_d = NULL; 1426a587d139SMark aijkokA->colmap_d = NULL; 1427a587d139SMark jaca = (Mat_SeqAIJ*)aij->A->data; 1428b3c64f9dSJunchao Zhang if (aij->B->cmap->n && !aij->garray) SETERRQ(comm,PETSC_ERR_PLIB,"MPIAIJ Matrix was assembled but is missing garray"); 1429a587d139SMark if (aij->B->rmap->n != aij->A->rmap->n) SETERRQ(comm,PETSC_ERR_SUP,"Only support aij->B->rmap->n == aij->A->rmap->n"); 1430a587d139SMark aij->donotstash = PETSC_TRUE; 1431a587d139SMark aij->A->nooffprocentries = aij->B->nooffprocentries = A->nooffprocentries = PETSC_TRUE; 1432a5b23f4aSJose E. Roman jaca->nonew = jacb->nonew = PETSC_TRUE; // no more disassembly 1433042217e8SBarry Smith ierr = PetscCalloc1(A->cmap->N,&colmap);CHKERRQ(ierr); 1434042217e8SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,(A->cmap->N)*sizeof(PetscInt));CHKERRQ(ierr); 1435042217e8SBarry Smith for (ii=0; ii<aij->B->cmap->n; ii++) colmap[aij->garray[ii]] = ii+1; 1436a587d139SMark // allocate B copy data 1437a587d139SMark h_mat.rstart = A->rmap->rstart; h_mat.rend = A->rmap->rend; 1438a587d139SMark h_mat.cstart = A->cmap->rstart; h_mat.cend = A->cmap->rend; 1439a587d139SMark nnz = jacb->i[n]; 1440a587d139SMark if (jacb->compressedrow.use) { 1441a587d139SMark const Kokkos::View<PetscInt*, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_i_k (jacb->i,n+1); 14429d676ae4SMark Adams aijkokB->i_uncompressed_d = new Kokkos::View<PetscInt*>(Kokkos::create_mirror(DefaultMemorySpace(),h_i_k)); 1443a587d139SMark Kokkos::deep_copy (*aijkokB->i_uncompressed_d, h_i_k); 1444a587d139SMark h_mat.offdiag.i = aijkokB->i_uncompressed_d->data(); 1445a587d139SMark } else { 1446*076ba34aSJunchao Zhang h_mat.offdiag.i = (PetscInt*)aijkokB->i_device_data(); 1447a587d139SMark } 1448*076ba34aSJunchao Zhang h_mat.offdiag.j = (PetscInt*)aijkokB->j_device_data(); 1449*076ba34aSJunchao Zhang h_mat.offdiag.a = aijkokB->a_device_data(); 1450a587d139SMark { 1451042217e8SBarry Smith Kokkos::View<PetscInt*, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_colmap_k (colmap,A->cmap->N); 14529d676ae4SMark Adams aijkokB->colmap_d = new Kokkos::View<PetscInt*>(Kokkos::create_mirror(DefaultMemorySpace(),h_colmap_k)); 1453a587d139SMark Kokkos::deep_copy (*aijkokB->colmap_d, h_colmap_k); 1454a587d139SMark h_mat.colmap = aijkokB->colmap_d->data(); 1455042217e8SBarry Smith ierr = PetscFree(colmap);CHKERRQ(ierr); 1456a587d139SMark } 1457a587d139SMark h_mat.offdiag.ignorezeroentries = jacb->ignorezeroentries; 1458a587d139SMark h_mat.offdiag.n = n; 1459a587d139SMark } 1460a587d139SMark // allocate A copy data 1461a587d139SMark nnz = jaca->i[n]; 1462a587d139SMark h_mat.diag.n = n; 1463a587d139SMark h_mat.diag.ignorezeroentries = jaca->ignorezeroentries; 146455b25c41SPierre Jolivet ierr = MPI_Comm_rank(comm,&h_mat.rank);CHKERRMPI(ierr); 1465042217e8SBarry Smith if (jaca->compressedrow.use) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"A does not suppport compressed row (todo)"); 1466042217e8SBarry Smith else { 1467*076ba34aSJunchao Zhang h_mat.diag.i = (PetscInt*)aijkokA->i_device_data(); 1468a587d139SMark } 1469*076ba34aSJunchao Zhang h_mat.diag.j = (PetscInt*)aijkokA->j_device_data(); 1470*076ba34aSJunchao Zhang h_mat.diag.a = aijkokA->a_device_data(); 1471a587d139SMark // copy pointers and metdata to device 1472a587d139SMark ierr = MatSeqAIJKokkosSetDeviceMat(Amat,&h_mat);CHKERRQ(ierr); 1473a587d139SMark ierr = MatSeqAIJKokkosGetDeviceMat(Amat,&d_mat);CHKERRQ(ierr); 1474a587d139SMark ierr = PetscInfo2(A,"Create device Mat n=%D nnz=%D\n",h_mat.diag.n, nnz);CHKERRQ(ierr); 1475a587d139SMark } 1476a587d139SMark *B = d_mat; // return it, set it in Mat, and set it up 1477a587d139SMark A->assembled = PETSC_FALSE; // ready to write with matsetvalues - this done (lazy) in normal MatSetValues 1478a587d139SMark PetscFunctionReturn(0); 1479a587d139SMark } 1480*076ba34aSJunchao Zhang 1481*076ba34aSJunchao Zhang PETSC_INTERN PetscErrorCode MatSeqAIJKokkosGetOffloadMask(Mat A, const char **mask) 1482*076ba34aSJunchao Zhang { 1483*076ba34aSJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos*>(A->spptr); 1484*076ba34aSJunchao Zhang 1485*076ba34aSJunchao Zhang PetscFunctionBegin; 1486*076ba34aSJunchao Zhang if (!aijkok) *mask = "AIJKOK_UNALLOCATED"; 1487*076ba34aSJunchao Zhang else if (aijkok->a_dual.need_sync_host()) *mask = "PETSC_OFFLOAD_GPU"; 1488*076ba34aSJunchao Zhang else if (aijkok->a_dual.need_sync_device()) *mask = "PETSC_OFFLOAD_CPU"; 1489*076ba34aSJunchao Zhang else *mask = "PETSC_OFFLOAD_BOTH"; 1490*076ba34aSJunchao Zhang PetscFunctionReturn(0); 1491*076ba34aSJunchao Zhang } 1492*076ba34aSJunchao Zhang 1493*076ba34aSJunchao Zhang PETSC_INTERN PetscErrorCode MatAIJKokkosPrintOffloadMask(Mat A) 1494*076ba34aSJunchao Zhang { 1495*076ba34aSJunchao Zhang PetscErrorCode ierr; 1496*076ba34aSJunchao Zhang PetscMPIInt size; 1497*076ba34aSJunchao Zhang Mat Ad,Ao; 1498*076ba34aSJunchao Zhang const char *amask,*bmask; 1499*076ba34aSJunchao Zhang 1500*076ba34aSJunchao Zhang PetscFunctionBegin; 1501*076ba34aSJunchao Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr); 1502*076ba34aSJunchao Zhang 1503*076ba34aSJunchao Zhang if (size == 1) { 1504*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetOffloadMask(A,&amask);CHKERRQ(ierr); 1505*076ba34aSJunchao Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"%s\n",amask);CHKERRQ(ierr); 1506*076ba34aSJunchao Zhang } else { 1507*076ba34aSJunchao Zhang Ad = ((Mat_MPIAIJ*)A->data)->A; 1508*076ba34aSJunchao Zhang Ao = ((Mat_MPIAIJ*)A->data)->B; 1509*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetOffloadMask(Ad,&amask);CHKERRQ(ierr); 1510*076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetOffloadMask(Ao,&bmask);CHKERRQ(ierr); 1511*076ba34aSJunchao Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"Diag : Off-diag = %s : %s\n",amask,bmask);CHKERRQ(ierr); 1512*076ba34aSJunchao Zhang } 1513*076ba34aSJunchao Zhang PetscFunctionReturn(0); 1514*076ba34aSJunchao Zhang } 1515