111d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 2f0e6e2d1SJunchao Zhang #include <petscpkg_version.h> 3076ba34aSJunchao Zhang #include <petscsf.h> 442550becSJunchao Zhang #include <petsc/private/sfimpl.h> 58c3ff71bSJunchao Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 642550becSJunchao Zhang #include <../src/mat/impls/aij/mpi/kokkos/mpiaijkok.hpp> 7076ba34aSJunchao Zhang #include <KokkosSparse_spadd.hpp> 8*0e3ece09SJunchao Zhang #include <KokkosSparse_spgemm.hpp> 911d22bbfSJunchao Zhang 10d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJKokkos(Mat A, MatAssemblyType mode) 11d71ae5a4SJacob Faibussowitsch { 125519a089SJose E. Roman Mat_SeqAIJKokkos *aijkok; 1330203840SJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)A->data; 148c3ff71bSJunchao Zhang 158c3ff71bSJunchao Zhang PetscFunctionBegin; 169566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd_MPIAIJ(A, mode)); 1730203840SJunchao Zhang /* E.g., MatCreateSubMatrix() calls MatCreateMPIAIJWithSeqAIJ(comm,A,B,..), which creates Bnew of SEQAIJ and destroys B of SEQAIJKOKKOS. 1830203840SJunchao Zhang Thus we finalize A/B/lvec's type in MatAssemblyEnd() to handle various cases. 1930203840SJunchao Zhang */ 2030203840SJunchao Zhang if (mode == MAT_FINAL_ASSEMBLY) { 2130203840SJunchao Zhang PetscCall(MatSetType(mpiaij->A, MATSEQAIJKOKKOS)); 2230203840SJunchao Zhang PetscCall(MatSetType(mpiaij->B, MATSEQAIJKOKKOS)); 2330203840SJunchao Zhang PetscCall(VecSetType(mpiaij->lvec, VECSEQKOKKOS)); 2430203840SJunchao Zhang } 255519a089SJose E. Roman aijkok = static_cast<Mat_SeqAIJKokkos *>(((Mat_MPIAIJ *)A->data)->A->spptr); /* Access spptr after MatAssemblyEnd_MPIAIJ(), which might have deleted old spptr */ 26a587d139SMark if (aijkok && aijkok->device_mat_d.data()) { 27a587d139SMark A->offloadmask = PETSC_OFFLOAD_GPU; // in GPU mode, no going back. MatSetValues checks this 28a587d139SMark } 29a587d139SMark 303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 318c3ff71bSJunchao Zhang } 328c3ff71bSJunchao Zhang 33d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJKokkos(Mat mat, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 34d71ae5a4SJacob Faibussowitsch { 358c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 368c3ff71bSJunchao Zhang 378c3ff71bSJunchao Zhang PetscFunctionBegin; 389566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 399566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 406a29ce69SStefano Zampini #if defined(PETSC_USE_DEBUG) 418c3ff71bSJunchao Zhang if (d_nnz) { 426a29ce69SStefano Zampini PetscInt i; 43ad540459SPierre Jolivet for (i = 0; i < mat->rmap->n; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 448c3ff71bSJunchao Zhang } 458c3ff71bSJunchao Zhang if (o_nnz) { 466a29ce69SStefano Zampini PetscInt i; 47ad540459SPierre Jolivet for (i = 0; i < mat->rmap->n; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 488c3ff71bSJunchao Zhang } 496a29ce69SStefano Zampini #endif 506a29ce69SStefano Zampini #if defined(PETSC_USE_CTABLE) 51eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 526a29ce69SStefano Zampini #else 539566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 546a29ce69SStefano Zampini #endif 559566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 569566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 579566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 586a29ce69SStefano Zampini /* Because the B will have been resized we simply destroy it and create a new one each time */ 599566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mpiaij->B)); 606a29ce69SStefano Zampini 616a29ce69SStefano Zampini if (!mpiaij->A) { 629566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &mpiaij->A)); 639566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mpiaij->A, mat->rmap->n, mat->cmap->n, mat->rmap->n, mat->cmap->n)); 646a29ce69SStefano Zampini } 656a29ce69SStefano Zampini if (!mpiaij->B) { 666a29ce69SStefano Zampini PetscMPIInt size; 679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size)); 689566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &mpiaij->B)); 699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mpiaij->B, mat->rmap->n, size > 1 ? mat->cmap->N : 0, mat->rmap->n, size > 1 ? mat->cmap->N : 0)); 708c3ff71bSJunchao Zhang } 719566063dSJacob Faibussowitsch PetscCall(MatSetType(mpiaij->A, MATSEQAIJKOKKOS)); 729566063dSJacob Faibussowitsch PetscCall(MatSetType(mpiaij->B, MATSEQAIJKOKKOS)); 739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(mpiaij->A, d_nz, d_nnz)); 749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(mpiaij->B, o_nz, o_nnz)); 758c3ff71bSJunchao Zhang mat->preallocated = PETSC_TRUE; 763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 778c3ff71bSJunchao Zhang } 788c3ff71bSJunchao Zhang 79d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPIAIJKokkos(Mat mat, Vec xx, Vec yy) 80d71ae5a4SJacob Faibussowitsch { 818c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 828c3ff71bSJunchao Zhang PetscInt nt; 838c3ff71bSJunchao Zhang 848c3ff71bSJunchao Zhang PetscFunctionBegin; 859566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 8608401ef6SPierre Jolivet PetscCheck(nt == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->cmap->n, nt); 879566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 889566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->mult)(mpiaij->A, xx, yy)); 899566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 909566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multadd)(mpiaij->B, mpiaij->lvec, yy, yy)); 913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 928c3ff71bSJunchao Zhang } 938c3ff71bSJunchao Zhang 94d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPIAIJKokkos(Mat mat, Vec xx, Vec yy, Vec zz) 95d71ae5a4SJacob Faibussowitsch { 968c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 978c3ff71bSJunchao Zhang PetscInt nt; 988c3ff71bSJunchao Zhang 998c3ff71bSJunchao Zhang PetscFunctionBegin; 1009566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 10108401ef6SPierre Jolivet PetscCheck(nt == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->cmap->n, nt); 1029566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1039566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->multadd)(mpiaij->A, xx, yy, zz)); 1049566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1059566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multadd)(mpiaij->B, mpiaij->lvec, zz, zz)); 1063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1078c3ff71bSJunchao Zhang } 1088c3ff71bSJunchao Zhang 109d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_MPIAIJKokkos(Mat mat, Vec xx, Vec yy) 110d71ae5a4SJacob Faibussowitsch { 1118c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 1128c3ff71bSJunchao Zhang PetscInt nt; 1138c3ff71bSJunchao Zhang 1148c3ff71bSJunchao Zhang PetscFunctionBegin; 1159566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 11608401ef6SPierre Jolivet PetscCheck(nt == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->rmap->n, nt); 1179566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multtranspose)(mpiaij->B, xx, mpiaij->lvec)); 1189566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->multtranspose)(mpiaij->A, xx, yy)); 1199566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, mpiaij->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 1209566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, mpiaij->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 1213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1228c3ff71bSJunchao Zhang } 1238c3ff71bSJunchao Zhang 124076ba34aSJunchao Zhang /* Merge the "A, B" matrices of mat into a matrix C. mat's type is MPIAIJKOKKOS. C's type is MATSEQAIJKOKKOS. 125076ba34aSJunchao Zhang A is put before B. C's size would be A->rmap->n by (A->cmap->n + B->cmap->n). 126076ba34aSJunchao Zhang C still uses local column ids. Their corresponding global column ids are returned in glob. 127076ba34aSJunchao Zhang */ 128d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge_MPIAIJKokkos(Mat mat, MatReuse reuse, IS *glob, Mat *C) 129d71ae5a4SJacob Faibussowitsch { 130076ba34aSJunchao Zhang Mat Ad, Ao; 131076ba34aSJunchao Zhang const PetscInt *cmap; 132076ba34aSJunchao Zhang 133076ba34aSJunchao Zhang PetscFunctionBegin; 1349566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(mat, &Ad, &Ao, &cmap)); 1359566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosMergeMats(Ad, Ao, reuse, C)); 136076ba34aSJunchao Zhang if (glob) { 137076ba34aSJunchao Zhang PetscInt cst, i, dn, on, *gidx; 1389566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, NULL, &dn)); 1399566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 1409566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cst, NULL)); 1419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 142076ba34aSJunchao Zhang for (i = 0; i < dn; i++) gidx[i] = cst + i; 143076ba34aSJunchao Zhang for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 1449566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 145076ba34aSJunchao Zhang } 1463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 147076ba34aSJunchao Zhang } 148076ba34aSJunchao Zhang 149*0e3ece09SJunchao Zhang /* Structs used in matrix products of type C=AB, C=A^tB and C=B^tAB */ 150076ba34aSJunchao Zhang struct MatMatStruct { 151*0e3ece09SJunchao Zhang PetscInt n, *garray; // C's garray and its size. 152*0e3ece09SJunchao Zhang KokkosCsrMatrix Cd, Co; // C is in split form matrices (all in local column indcies) 153*0e3ece09SJunchao Zhang KokkosCsrMatrix C1, C2, C3, C4; // intermediate mat products 154*0e3ece09SJunchao Zhang KokkosCsrMatrix C2_mid, C4_mid; // alias of C2, C4; share their a[], i[], but with different j[] (hence column size) 155*0e3ece09SJunchao Zhang PetscIntKokkosView E_NzLeft; 156*0e3ece09SJunchao Zhang PetscSF sf = nullptr; // SF to bcast or reduce matrices E to F 157*0e3ece09SJunchao Zhang MatScalarKokkosView rootBuf, leafBuf; 158*0e3ece09SJunchao Zhang KokkosCsrMatrix Fd, Fo; // F in split form 159*0e3ece09SJunchao Zhang 160*0e3ece09SJunchao Zhang KernelHandle kh1; // compute C1, add C1+C3 or C1+Fd 161*0e3ece09SJunchao Zhang KernelHandle kh2; // compute C2, add C2+C4 or C2+Fo 162*0e3ece09SJunchao Zhang KernelHandle kh3; // compute C3 163*0e3ece09SJunchao Zhang KernelHandle kh4; // compute C4 164*0e3ece09SJunchao Zhang 165*0e3ece09SJunchao Zhang PetscInt E_TeamSize; // kernel launching parameters in merging E or spliting F 166*0e3ece09SJunchao Zhang PetscInt E_VectorLength; 167*0e3ece09SJunchao Zhang PetscInt E_RowsPerTeam; 168*0e3ece09SJunchao Zhang PetscInt F_TeamSize; 169*0e3ece09SJunchao Zhang PetscInt F_VectorLength; 170*0e3ece09SJunchao Zhang PetscInt F_RowsPerTeam; 171076ba34aSJunchao Zhang 172d71ae5a4SJacob Faibussowitsch ~MatMatStruct() 173d71ae5a4SJacob Faibussowitsch { 1743ba16761SJacob Faibussowitsch PetscFunctionBegin; 1753ba16761SJacob Faibussowitsch PetscCallAbort(PETSC_COMM_SELF, PetscSFDestroy(&sf)); 1763ba16761SJacob Faibussowitsch PetscFunctionReturnVoid(); 177076ba34aSJunchao Zhang } 178076ba34aSJunchao Zhang }; 179076ba34aSJunchao Zhang 180076ba34aSJunchao Zhang struct MatMatStruct_AB : public MatMatStruct { 181*0e3ece09SJunchao Zhang PetscIntKokkosView F_NzLeft; // plans to split F (in leafbuf) into Fd, Fo 182*0e3ece09SJunchao Zhang PetscIntKokkosView irootloc; // plans to put E (i.e., Bd, Bo) into rootBuf 183*0e3ece09SJunchao Zhang PetscIntKokkosView rowoffset; 184076ba34aSJunchao Zhang }; 185076ba34aSJunchao Zhang 186076ba34aSJunchao Zhang struct MatMatStruct_AtB : public MatMatStruct { 187*0e3ece09SJunchao Zhang MatColIdxKokkosView Fdjmap; // plans to reduce data in rootBuf to Fd, Fo 188*0e3ece09SJunchao Zhang MatColIdxKokkosView Fdjperm; 189*0e3ece09SJunchao Zhang MatColIdxKokkosView Fojmap; 190*0e3ece09SJunchao Zhang MatColIdxKokkosView Fojperm; 191076ba34aSJunchao Zhang }; 192076ba34aSJunchao Zhang 1939371c9d4SSatish Balay struct MatProductData_MPIAIJKokkos { 1943ba16761SJacob Faibussowitsch MatMatStruct_AB *mmAB = nullptr; 1953ba16761SJacob Faibussowitsch MatMatStruct_AtB *mmAtB = nullptr; 1963ba16761SJacob Faibussowitsch PetscBool reusesym = PETSC_FALSE; 197*0e3ece09SJunchao Zhang Mat Z = nullptr; // store Z=AB in computing BtAB 198076ba34aSJunchao Zhang 199d71ae5a4SJacob Faibussowitsch ~MatProductData_MPIAIJKokkos() 200d71ae5a4SJacob Faibussowitsch { 201076ba34aSJunchao Zhang delete mmAB; 202076ba34aSJunchao Zhang delete mmAtB; 203*0e3ece09SJunchao Zhang PetscCallAbort(PETSC_COMM_SELF, MatDestroy(&Z)); 204076ba34aSJunchao Zhang } 205076ba34aSJunchao Zhang }; 206076ba34aSJunchao Zhang 207d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductDataDestroy_MPIAIJKokkos(void *data) 208d71ae5a4SJacob Faibussowitsch { 209076ba34aSJunchao Zhang PetscFunctionBegin; 2109566063dSJacob Faibussowitsch PetscCallCXX(delete static_cast<MatProductData_MPIAIJKokkos *>(data)); 2113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 212076ba34aSJunchao Zhang } 213076ba34aSJunchao Zhang 214076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices - Set the diag and offdiag matrices of a MATMPIAIJKOKKOS matrix. 215076ba34aSJunchao Zhang It is similar to MatCreateMPIAIJWithSplitArrays. 216076ba34aSJunchao Zhang 217076ba34aSJunchao Zhang Input Parameters: 218076ba34aSJunchao Zhang + mat - the MATMPIAIJKOKKOS matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set 219076ba34aSJunchao Zhang . A - the diag matrix using local col ids 220076ba34aSJunchao Zhang - B - the offdiag matrix using global col ids 221076ba34aSJunchao Zhang 222076ba34aSJunchao Zhang Output Parameters: 223076ba34aSJunchao Zhang . mat - the updated MATMPIAIJKOKKOS matrix 224076ba34aSJunchao Zhang */ 225*0e3ece09SJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Mat mat, Mat A, Mat B, PetscInt *garray) 226d71ae5a4SJacob Faibussowitsch { 227076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 228076ba34aSJunchao Zhang PetscInt m, n, M, N, Am, An, Bm, Bn; 229076ba34aSJunchao Zhang 230076ba34aSJunchao Zhang PetscFunctionBegin; 2319566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 2329566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 2339566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &Am, &An)); 2349566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &Bm, &Bn)); 235076ba34aSJunchao Zhang 236aed4548fSBarry Smith PetscCheck(m == Am && m == Bm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of rows do not match"); 23708401ef6SPierre Jolivet PetscCheck(n == An, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of columns do not match"); 238*0e3ece09SJunchao Zhang // PetscCheck(N == Bn, PETSC_COMM_SELF, PETSC_ERR_PLIB, "global number of columns do not match"); 23908401ef6SPierre Jolivet PetscCheck(!mpiaij->A && !mpiaij->B, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A, B of the MPIAIJ matrix are not empty"); 240076ba34aSJunchao Zhang mpiaij->A = A; 241076ba34aSJunchao Zhang mpiaij->B = B; 242*0e3ece09SJunchao Zhang mpiaij->garray = garray; 243076ba34aSJunchao Zhang 244076ba34aSJunchao Zhang mat->preallocated = PETSC_TRUE; 245076ba34aSJunchao Zhang mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 246076ba34aSJunchao Zhang 2479566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 2489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 249076ba34aSJunchao Zhang /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 250076ba34aSJunchao Zhang also gets mpiaij->B compacted, with its col ids and size reduced 251076ba34aSJunchao Zhang */ 2529566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 2539566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 2549566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 256076ba34aSJunchao Zhang } 257076ba34aSJunchao Zhang 258*0e3ece09SJunchao Zhang // Adapted from Kokkos-Kernels spmv_launch_parameters(), to get parameters in Kokkos nested loops which we used to merge or 259*0e3ece09SJunchao Zhang // split csr matrices. The rule is to have "vector_length * team_size" be around 256 on GPUs (e.g., for a CUDA thread block) 260*0e3ece09SJunchao Zhang template <class ExecutionSpace> 261*0e3ece09SJunchao Zhang static PetscErrorCode MatMergeGetLaunchParameters(PetscInt numRows, PetscInt nnz, PetscInt rows_per_thread, PetscInt &team_size, PetscInt &vector_length, PetscInt &rows_per_team) 262d71ae5a4SJacob Faibussowitsch { 263*0e3ece09SJunchao Zhang Kokkos::TeamPolicy<ExecutionSpace> teamPolicy(128, Kokkos::AUTO); 264076ba34aSJunchao Zhang 265076ba34aSJunchao Zhang PetscFunctionBegin; 266*0e3ece09SJunchao Zhang PetscInt nnz_per_row = numRows ? (nnz / numRows) : 0; // we might meet empty matrices 267076ba34aSJunchao Zhang 268*0e3ece09SJunchao Zhang if (nnz_per_row < 1) nnz_per_row = 1; 269076ba34aSJunchao Zhang 270*0e3ece09SJunchao Zhang int max_vector_length = teamPolicy.vector_length_max(); 271076ba34aSJunchao Zhang 272*0e3ece09SJunchao Zhang if (vector_length < 1) { 273*0e3ece09SJunchao Zhang vector_length = 1; 274*0e3ece09SJunchao Zhang while (vector_length < max_vector_length && vector_length * 6 < nnz_per_row) vector_length *= 2; 275076ba34aSJunchao Zhang } 276076ba34aSJunchao Zhang 277*0e3ece09SJunchao Zhang // Determine rows per thread 278*0e3ece09SJunchao Zhang if (rows_per_thread < 1) { 279*0e3ece09SJunchao Zhang if (KokkosKernels::Impl::kk_is_gpu_exec_space<ExecutionSpace>()) rows_per_thread = 1; 280*0e3ece09SJunchao Zhang else { 281*0e3ece09SJunchao Zhang if (nnz_per_row < 20 && nnz > 5000000) { 282*0e3ece09SJunchao Zhang rows_per_thread = 256; 283*0e3ece09SJunchao Zhang } else rows_per_thread = 64; 284076ba34aSJunchao Zhang } 285076ba34aSJunchao Zhang } 286076ba34aSJunchao Zhang 287*0e3ece09SJunchao Zhang if (team_size < 1) { 288*0e3ece09SJunchao Zhang if (KokkosKernels::Impl::kk_is_gpu_exec_space<ExecutionSpace>()) { 289*0e3ece09SJunchao Zhang team_size = 256 / vector_length; 290076ba34aSJunchao Zhang } else { 291*0e3ece09SJunchao Zhang team_size = 1; 292*0e3ece09SJunchao Zhang } 293076ba34aSJunchao Zhang } 294076ba34aSJunchao Zhang 295*0e3ece09SJunchao Zhang rows_per_team = rows_per_thread * team_size; 296076ba34aSJunchao Zhang 297*0e3ece09SJunchao Zhang if (rows_per_team < 0) { 298*0e3ece09SJunchao Zhang PetscInt nnz_per_team = 4096; 299*0e3ece09SJunchao Zhang PetscInt conc = ExecutionSpace().concurrency(); 300*0e3ece09SJunchao Zhang while ((conc * nnz_per_team * 4 > nnz) && (nnz_per_team > 256)) nnz_per_team /= 2; 301*0e3ece09SJunchao Zhang rows_per_team = (nnz_per_team + nnz_per_row - 1) / nnz_per_row; 302*0e3ece09SJunchao Zhang } 3033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 304076ba34aSJunchao Zhang } 305076ba34aSJunchao Zhang 306*0e3ece09SJunchao Zhang /* 307*0e3ece09SJunchao Zhang Reduce two sets of global indices into local ones 308076ba34aSJunchao Zhang 309076ba34aSJunchao Zhang Input Parameters: 310*0e3ece09SJunchao Zhang + n1 - size of garray1[], the first set 311*0e3ece09SJunchao Zhang . garray1[n1] - a sorted global index array (without duplicates) 312*0e3ece09SJunchao Zhang . m - size of indices[], the second set 313*0e3ece09SJunchao Zhang - indices[m] - a unsorted global index array (might have duplicates), which will be updated on output into local ones 314076ba34aSJunchao Zhang 315076ba34aSJunchao Zhang Output Parameters: 316*0e3ece09SJunchao Zhang + n2 - size of garray2[], the merged set, which combines garray1[] and indices[] 317*0e3ece09SJunchao Zhang . garray2[n2] - allocated by callee using PetscMalloc1(). Contains sorted unique global indices (without duplicates). Caller needs to free it. 318*0e3ece09SJunchao Zhang . map[n1] - allocated by caller. It gives garray1[i] = garray2[map[i]] 319*0e3ece09SJunchao Zhang - indices[m] - on output, global indices in this array are rewritten with local ones, i.e, indices_input[i] = garray2[indices_output[i]] 320076ba34aSJunchao Zhang 321*0e3ece09SJunchao Zhang Example, say 322*0e3ece09SJunchao Zhang n1 = 5 323*0e3ece09SJunchao Zhang garray1[5] = {1, 4, 7, 8, 10} 324*0e3ece09SJunchao Zhang m = 4 325*0e3ece09SJunchao Zhang indices[4] = {2, 4, 8, 9} 32611a5261eSBarry Smith 327*0e3ece09SJunchao Zhang Combining them together, we have 7 global indices in garray2[] 328*0e3ece09SJunchao Zhang n2 = 7 329*0e3ece09SJunchao Zhang garray2[7] = {1, 2, 4, 7, 8, 9, 10} 330*0e3ece09SJunchao Zhang 331*0e3ece09SJunchao Zhang And we have map[] to connect "garray1[i] = garray2[map[i]], i=[0,n1)" 332*0e3ece09SJunchao Zhang map[5] = {0, 2, 3, 4, 6} 333*0e3ece09SJunchao Zhang 334*0e3ece09SJunchao Zhang On output, indices[] is updated with local indices 335*0e3ece09SJunchao Zhang indices[4] = {1, 2, 4, 5} 336076ba34aSJunchao Zhang */ 337*0e3ece09SJunchao Zhang static PetscErrorCode ReduceTwoSetsOfGlobalIndices(PetscInt n1, const PetscInt *garray1, PetscInt m, PetscInt *indices, PetscInt *n2_, PetscInt **garray2_, PetscInt *map) 338d71ae5a4SJacob Faibussowitsch { 339*0e3ece09SJunchao Zhang PetscHMapI g2l = nullptr; 340*0e3ece09SJunchao Zhang PetscHashIter iter; 341*0e3ece09SJunchao Zhang PetscInt tot, key, val; // total unique global indices. key is global id; val is local id 342*0e3ece09SJunchao Zhang PetscInt n2, *garray2; 343076ba34aSJunchao Zhang 344076ba34aSJunchao Zhang PetscFunctionBegin; 345*0e3ece09SJunchao Zhang tot = 0; 346*0e3ece09SJunchao Zhang PetscCall(PetscHMapICreateWithSize(n1, &g2l)); 347*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < m; i++) { // insert those in indices[] 348*0e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, indices[i], -1, &val)); // if not exist, val is set with -1 349*0e3ece09SJunchao Zhang if (val < 0) PetscCall(PetscHMapISet(g2l, indices[i], tot++)); // val < 0 means gid is not in the hash table yet 350076ba34aSJunchao Zhang } 351076ba34aSJunchao Zhang 352*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < n1; i++) { // insert those in garray1[] 353*0e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, garray1[i], -1, &val)); 354*0e3ece09SJunchao Zhang if (val < 0) PetscCall(PetscHMapISet(g2l, garray1[i], tot++)); 355076ba34aSJunchao Zhang } 356076ba34aSJunchao Zhang 357*0e3ece09SJunchao Zhang // Pull out (unique) globals in the hash table and put them in garray2[] 358*0e3ece09SJunchao Zhang n2 = tot; 359*0e3ece09SJunchao Zhang PetscCall(PetscMalloc1(n2, &garray2)); 360*0e3ece09SJunchao Zhang tot = 0; 361*0e3ece09SJunchao Zhang PetscHashIterBegin(g2l, iter); 362*0e3ece09SJunchao Zhang while (!PetscHashIterAtEnd(g2l, iter)) { 363*0e3ece09SJunchao Zhang PetscHashIterGetKey(g2l, iter, key); 364*0e3ece09SJunchao Zhang PetscHashIterNext(g2l, iter); 365*0e3ece09SJunchao Zhang garray2[tot++] = key; 366076ba34aSJunchao Zhang } 367076ba34aSJunchao Zhang 368*0e3ece09SJunchao Zhang // Sort garray2[] and then map them to local indices starting from 0 369*0e3ece09SJunchao Zhang PetscCall(PetscSortInt(n2, garray2)); 370*0e3ece09SJunchao Zhang PetscCall(PetscHMapIClear(g2l)); 371*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < tot; i++) PetscCall(PetscHMapISet(g2l, garray2[i], i)); // i is the local id 372f0e6e2d1SJunchao Zhang 373*0e3ece09SJunchao Zhang // Rewrite indices[] with local indices 374f0e6e2d1SJunchao Zhang for (PetscInt i = 0; i < m; i++) { 375*0e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, indices[i], -1, &val)); 376*0e3ece09SJunchao Zhang PetscAssert(val >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Met a negative local column index"); 377*0e3ece09SJunchao Zhang indices[i] = val; 378*0e3ece09SJunchao Zhang } 379*0e3ece09SJunchao Zhang // Record the map that maps garray1[i] to garray2[map[i]] 380*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < n1; i++) PetscCall(PetscHMapIGetWithDefault(g2l, garray1[i], -1, &map[i])); 381*0e3ece09SJunchao Zhang PetscCall(PetscHMapIDestroy(&g2l)); 382*0e3ece09SJunchao Zhang *n2_ = n2; 383*0e3ece09SJunchao Zhang *garray2_ = garray2; 384*0e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 385*0e3ece09SJunchao Zhang } 386f0e6e2d1SJunchao Zhang 387*0e3ece09SJunchao Zhang /* 388*0e3ece09SJunchao Zhang MatMPIAIJKokkosReduce - Reduce rows of a MPIAIJKOKKOS matrix (E, in split form) to produce another matrix (F, also in split form, stored in mm) 389*0e3ece09SJunchao Zhang 390*0e3ece09SJunchao Zhang It is the reverse of MatMPIAIJKokkosBcast() in some sense, but with a different signature since we do not really need a fully populated MPIAIJKOKKOS E. 391*0e3ece09SJunchao Zhang 392*0e3ece09SJunchao Zhang Think each row of E as a leaf, then the given ownerSF specifies roots for the leaves. Roots may connect to multiple leaves. 393*0e3ece09SJunchao Zhang In this routine, we sparse-merge leaves (rows) at their roots to form potentially longer rows in F. F's number of rows will be nroots of ownerSF. 394*0e3ece09SJunchao Zhang 395*0e3ece09SJunchao Zhang Input Parameters: 396*0e3ece09SJunchao Zhang + comm - MPI communicator of E 397*0e3ece09SJunchao Zhang . A - diag block of E, using local column indices 398*0e3ece09SJunchao Zhang . B - off-diag block of E, using local column indices 399*0e3ece09SJunchao Zhang . cstart - (global) start column of Ed 400*0e3ece09SJunchao Zhang . cend - (global) end column + 1 of Ed. In other words, E's column ownership is in range of [cstart, cend) 401*0e3ece09SJunchao Zhang . garray1[n1] - global column indices of Eo. Here n1 is Eo's column size. 402*0e3ece09SJunchao Zhang . ownerSF - the SF specifies ownership (root) of rows in E 403*0e3ece09SJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 404*0e3ece09SJunchao Zhang - mm - to stash intermediate data structures for reuse 405*0e3ece09SJunchao Zhang 406*0e3ece09SJunchao Zhang Output Parameters: 407*0e3ece09SJunchao Zhang + map[n1] - allocated by caller. It maps garray1[] to garray2[]. See more at ReduceTwoSetsOfGlobalIndices(). 408*0e3ece09SJunchao Zhang - mm - contains various info, such as garray2[], F (Fd, Fo) etc. 409*0e3ece09SJunchao Zhang 410*0e3ece09SJunchao Zhang Notes: 411*0e3ece09SJunchao Zhang When reuse = MAT_REUSE_MATRIX, cstart, cend, garray1, ownerSF, map are not significant. 412*0e3ece09SJunchao Zhang 413*0e3ece09SJunchao Zhang */ 414*0e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosReduceBegin(MPI_Comm comm, KokkosCsrMatrix A, KokkosCsrMatrix B, PetscInt cstart, PetscInt cend, const PetscInt *garray1, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AtB *mm) 415*0e3ece09SJunchao Zhang { 416*0e3ece09SJunchao Zhang PetscFunctionBegin; 417*0e3ece09SJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 418*0e3ece09SJunchao Zhang PetscInt Em = A.numRows(), Fm; 419*0e3ece09SJunchao Zhang PetscInt n1 = B.numCols(); 420*0e3ece09SJunchao Zhang 421*0e3ece09SJunchao Zhang PetscCall(PetscSFGetGraph(ownerSF, &Fm, NULL, NULL, NULL)); // Fm = #rows of F = nroots of ownerSF 422*0e3ece09SJunchao Zhang 423*0e3ece09SJunchao Zhang // Do the analysis on host 424*0e3ece09SJunchao Zhang auto Ai_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), A.graph.row_map); 425*0e3ece09SJunchao Zhang auto Aj_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), A.graph.entries); 426*0e3ece09SJunchao Zhang auto Bi_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), B.graph.row_map); 427*0e3ece09SJunchao Zhang auto Bj_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), B.graph.entries); 428*0e3ece09SJunchao Zhang const MatRowMapType *Ai = Ai_h.data(), *Bi = Bi_h.data(); 429*0e3ece09SJunchao Zhang const MatColIdxType *Aj = Aj_h.data(), *Bj = Bj_h.data(); 430*0e3ece09SJunchao Zhang 431*0e3ece09SJunchao Zhang // Count how many nonzeros of each row in E are in the left of the diag block [cstart,cend) 432*0e3ece09SJunchao Zhang PetscIntKokkosViewHost E_NzLeft_h("E_NzLeft_h", Em), E_RowLen_h("E_RowLen_h", Em); 433*0e3ece09SJunchao Zhang PetscInt *E_NzLeft = E_NzLeft_h.data(), *E_RowLen = E_RowLen_h.data(); 434*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) { 435*0e3ece09SJunchao Zhang const PetscInt *first, *last, *it; 436*0e3ece09SJunchao Zhang PetscInt count, step; 437*0e3ece09SJunchao Zhang // std::lower_bound(first,last,cstart), but need to use global column indices 438*0e3ece09SJunchao Zhang first = Bj + Bi[i]; 439*0e3ece09SJunchao Zhang last = Bj + Bi[i + 1]; 440f0e6e2d1SJunchao Zhang count = last - first; 441f0e6e2d1SJunchao Zhang while (count > 0) { 442f0e6e2d1SJunchao Zhang it = first; 443f0e6e2d1SJunchao Zhang step = count / 2; 444f0e6e2d1SJunchao Zhang it += step; 445*0e3ece09SJunchao Zhang if (garray1[*it] < cstart) { // map local to global 446f0e6e2d1SJunchao Zhang first = ++it; 447f0e6e2d1SJunchao Zhang count -= step + 1; 448f0e6e2d1SJunchao Zhang } else count = step; 449f0e6e2d1SJunchao Zhang } 450*0e3ece09SJunchao Zhang E_NzLeft[i] = first - (Bj + Bi[i]); 451*0e3ece09SJunchao Zhang E_RowLen[i] = (Ai[i + 1] - Ai[i]) + (Bi[i + 1] - Bi[i]); 452f0e6e2d1SJunchao Zhang } 453f0e6e2d1SJunchao Zhang 454*0e3ece09SJunchao Zhang // Get length of rows (i.e., sizes of leaves) that contribute to my roots 455*0e3ece09SJunchao Zhang const PetscMPIInt *iranks, *ranks; 456*0e3ece09SJunchao Zhang const PetscInt *ioffset, *irootloc, *roffset, *rmine; 457*0e3ece09SJunchao Zhang PetscInt niranks, nranks; 458*0e3ece09SJunchao Zhang MPI_Request *reqs; 459*0e3ece09SJunchao Zhang PetscMPIInt tag; 460*0e3ece09SJunchao Zhang PetscSF reduceSF; 461*0e3ece09SJunchao Zhang PetscInt *sdisp, *rdisp; 462f0e6e2d1SJunchao Zhang 463*0e3ece09SJunchao Zhang PetscCall(PetscCommGetNewTag(comm, &tag)); 464*0e3ece09SJunchao Zhang PetscCall(PetscSFGetLeafRanks(ownerSF, &niranks, &iranks, &ioffset, &irootloc)); // get leaf ranks connecting to roots on this process (I'll recv from them) 465*0e3ece09SJunchao Zhang PetscCall(PetscSFGetRootRanks(ownerSF, &nranks, &ranks, &roffset, &rmine, NULL)); // get root ranks this process connects (I'll send to them) 466f0e6e2d1SJunchao Zhang 467*0e3ece09SJunchao Zhang // Find out length of each row I will receive. Even for the same row index, when they are from 468*0e3ece09SJunchao Zhang // different senders, they might have different lengths (and sparsity patterns) 469*0e3ece09SJunchao Zhang PetscInt sendRowCnt = roffset[nranks], recvRowCnt = ioffset[niranks]; 470*0e3ece09SJunchao Zhang PetscInt *sendRowLen, *recvRowLen; // lengths of rows of I need to send/recv per process 471f0e6e2d1SJunchao Zhang 472*0e3ece09SJunchao Zhang PetscCall(PetscMalloc5(sendRowCnt, &sendRowLen, recvRowCnt + 1, &recvRowLen, nranks, &sdisp, niranks + 1, &rdisp, nranks + niranks, &reqs)); 473*0e3ece09SJunchao Zhang 474*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < sendRowCnt; i++) sendRowLen[i] = E_RowLen[rmine[i]]; 475*0e3ece09SJunchao Zhang recvRowLen[0] = 0; // since we will make it in CSR format later 476*0e3ece09SJunchao Zhang recvRowLen++; // advance the pointer now 477*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { MPI_Irecv(&recvRowLen[ioffset[i]], ioffset[i + 1] - ioffset[i], MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i]); } 478*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { MPI_Isend(&sendRowLen[roffset[i]], roffset[i + 1] - roffset[i], MPIU_INT, ranks[i], tag, comm, &reqs[i]); } 479*0e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(nranks + niranks, reqs, MPI_STATUSES_IGNORE)); 480*0e3ece09SJunchao Zhang 481*0e3ece09SJunchao Zhang // Build the real PetscSF for reducing E rows (buffer to buffer) 482*0e3ece09SJunchao Zhang rdisp[0] = 0; 483*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { 484*0e3ece09SJunchao Zhang rdisp[i + 1] = rdisp[i]; 485*0e3ece09SJunchao Zhang for (PetscInt j = ioffset[i]; j < ioffset[i + 1]; j++) { rdisp[i + 1] += recvRowLen[j]; } 486*0e3ece09SJunchao Zhang } 487*0e3ece09SJunchao Zhang recvRowLen--; // put it back into csr format 488*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < recvRowCnt; i++) recvRowLen[i + 1] += recvRowLen[i]; 489*0e3ece09SJunchao Zhang 490*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { MPI_Irecv(&sdisp[i], 1, MPIU_INT, ranks[i], tag, comm, &reqs[i]); } 491*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { MPI_Isend(&rdisp[i], 1, MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i]); } 492*0e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(nranks + niranks, reqs, MPI_STATUSES_IGNORE)); 493*0e3ece09SJunchao Zhang 494*0e3ece09SJunchao Zhang PetscInt nleaves = 0, Enz = 0; // leaves are nonzeros I will send 495*0e3ece09SJunchao Zhang PetscInt nroots = rdisp[niranks]; // roots are nonzeros I will recv 496*0e3ece09SJunchao Zhang PetscSFNode *iremote; 497*0e3ece09SJunchao Zhang 498*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) Enz += E_RowLen[i]; 499*0e3ece09SJunchao Zhang PetscAssert(A.nnz() + B.nnz() == Enz, comm, PETSC_ERR_PLIB, "Enz should be equal to sum of nnz of A and B"); 500*0e3ece09SJunchao Zhang PetscCallMPI(PetscMalloc1(Enz, &iremote)); // no free, since we give ownership to reduceSF 501*0e3ece09SJunchao Zhang 502*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { 503*0e3ece09SJunchao Zhang PetscInt count = 0; 504*0e3ece09SJunchao Zhang for (PetscInt j = roffset[i]; j < roffset[i + 1]; j++) count += E_RowLen[rmine[j]]; 505*0e3ece09SJunchao Zhang for (PetscInt j = 0; j < count; j++) { 506*0e3ece09SJunchao Zhang iremote[nleaves + j].rank = ranks[i]; 507*0e3ece09SJunchao Zhang iremote[nleaves + j].index = sdisp[i] + j; 508*0e3ece09SJunchao Zhang } 509*0e3ece09SJunchao Zhang nleaves += count; 510*0e3ece09SJunchao Zhang } 511*0e3ece09SJunchao Zhang PetscCheck(nleaves == Enz, comm, PETSC_ERR_PLIB, "nleaves should be equal to Enz"); 512*0e3ece09SJunchao Zhang 513*0e3ece09SJunchao Zhang PetscCall(PetscSFCreate(comm, &reduceSF)); 514*0e3ece09SJunchao Zhang PetscCall(PetscSFSetGraph(reduceSF, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 515*0e3ece09SJunchao Zhang 516*0e3ece09SJunchao Zhang // Copy (global) column indices of the needed rows in E to sendCol[], and then PetscSFReduce to recvCol[] 517*0e3ece09SJunchao Zhang PetscInt *sendCol, *recvCol; 518*0e3ece09SJunchao Zhang PetscCall(PetscMalloc2(nleaves, &sendCol, nroots, &recvCol)); 519*0e3ece09SJunchao Zhang for (PetscInt k = 0; k < roffset[nranks]; k++) { 520*0e3ece09SJunchao Zhang PetscInt i = rmine[k]; // row to be copied 521*0e3ece09SJunchao Zhang PetscInt *buf = &sendCol[Ai[i] + Bi[i]]; 522*0e3ece09SJunchao Zhang PetscInt nzLeft = E_NzLeft[i]; 523*0e3ece09SJunchao Zhang PetscInt alen = Ai[i + 1] - Ai[i], blen = Bi[i + 1] - Bi[i]; 524*0e3ece09SJunchao Zhang for (PetscInt j = 0; j < alen + blen; j++) { 525*0e3ece09SJunchao Zhang if (j < nzLeft) { 526*0e3ece09SJunchao Zhang buf[j] = garray1[Bj[Bi[i] + j]]; // left B, in global 527*0e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { 528*0e3ece09SJunchao Zhang buf[j] = Aj[Ai[i] + j - nzLeft] + cstart; // diag A, also in global 529*0e3ece09SJunchao Zhang } else { 530*0e3ece09SJunchao Zhang buf[j] = garray1[Bj[Bi[i] + j - alen]]; // right B, in global 531*0e3ece09SJunchao Zhang } 532*0e3ece09SJunchao Zhang } 533*0e3ece09SJunchao Zhang } 534*0e3ece09SJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(reduceSF, MPIU_INT, PETSC_MEMTYPE_HOST, sendCol, PETSC_MEMTYPE_HOST, recvCol, MPI_REPLACE)); 535*0e3ece09SJunchao Zhang PetscCall(PetscSFReduceEnd(reduceSF, MPIU_INT, sendCol, recvCol, MPI_REPLACE)); 536*0e3ece09SJunchao Zhang 537*0e3ece09SJunchao Zhang // With recvCol[], we do a series of analysis to get i, j of Fd, Fo, and build plans to reduce nonzeros in recv buffers to Fd and Fo 538*0e3ece09SJunchao Zhang PetscInt *recvRowPerm, *recvColSorted; 539*0e3ece09SJunchao Zhang PetscInt *recvNzPerm, *recvNzPermSorted; 540*0e3ece09SJunchao Zhang PetscCall(PetscMalloc4(recvRowCnt, &recvRowPerm, nroots, &recvColSorted, nroots, &recvNzPerm, nroots, &recvNzPermSorted)); 541*0e3ece09SJunchao Zhang 542*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < nroots; i++) recvNzPerm[i] = i; // numbering all received nonzeros 543*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < recvRowCnt; i++) recvRowPerm[i] = i; // put up a permutation array, so that after sorting we know where to get a row in recvCol[] 544*0e3ece09SJunchao Zhang PetscCall(PetscSortIntWithPermutation(recvRowCnt, irootloc, recvRowPerm)); // irootloc[] (owned by ownerSF) won't be changed 545*0e3ece09SJunchao Zhang 546*0e3ece09SJunchao Zhang // i[] array, nz are always easiest to compute 547*0e3ece09SJunchao Zhang MatRowMapKokkosViewHost Fdi_h("Fdi_h", Fm + 1), Foi_h("Foi_h", Fm + 1); 548*0e3ece09SJunchao Zhang MatRowMapType *Fdi, *Foi; 549*0e3ece09SJunchao Zhang PetscInt FnzDups = 0, Fdnz = 0, FdnzDups = 0, Fonz = 0, FonzDups = 0; // nz (with or without dups) in F, Fd, Fo 550*0e3ece09SJunchao Zhang PetscInt iter; 551*0e3ece09SJunchao Zhang 552*0e3ece09SJunchao Zhang Kokkos::deep_copy(Fdi_h, 0); // zero, as we will do 'val++' on them 553*0e3ece09SJunchao Zhang Kokkos::deep_copy(Foi_h, 0); 554*0e3ece09SJunchao Zhang Fdi = Fdi_h.data() + 1; // +1 for easy indexing in code below 555*0e3ece09SJunchao Zhang Foi = Foi_h.data() + 1; 556*0e3ece09SJunchao Zhang iter = 0; 557*0e3ece09SJunchao Zhang while (iter < recvRowCnt) { // iter over received rows 558*0e3ece09SJunchao Zhang PetscInt curRowIdx = irootloc[recvRowPerm[iter]]; 559*0e3ece09SJunchao Zhang PetscInt dupRows = 1; // current row has this many contributing rows (of various sparsity patterns) 560*0e3ece09SJunchao Zhang 561*0e3ece09SJunchao Zhang while (iter + dupRows < recvRowCnt && irootloc[recvRowPerm[iter + dupRows]] == curRowIdx) dupRows++; 562*0e3ece09SJunchao Zhang 563*0e3ece09SJunchao Zhang // Copy column indices (and their permutation) of these rows into recvColSorted & recvNzPermSorted 564*0e3ece09SJunchao Zhang PetscInt nz = 0; // nz (with dups) in the current row 565*0e3ece09SJunchao Zhang PetscInt *jbuf = recvColSorted + FnzDups; 566*0e3ece09SJunchao Zhang PetscInt *pbuf = recvNzPermSorted + FnzDups; 567*0e3ece09SJunchao Zhang PetscInt *jbuf2 = jbuf; // temp pointers 568*0e3ece09SJunchao Zhang PetscInt *pbuf2 = pbuf; 569*0e3ece09SJunchao Zhang for (PetscInt d = 0; d < dupRows; d++) { 570*0e3ece09SJunchao Zhang PetscInt i = recvRowPerm[iter + d]; 571*0e3ece09SJunchao Zhang PetscInt len = recvRowLen[i + 1] - recvRowLen[i]; 572*0e3ece09SJunchao Zhang PetscCall(PetscArraycpy(jbuf2, &recvCol[recvRowLen[i]], len)); 573*0e3ece09SJunchao Zhang PetscCall(PetscArraycpy(pbuf2, &recvNzPerm[recvRowLen[i]], len)); 574*0e3ece09SJunchao Zhang jbuf2 += len; 575*0e3ece09SJunchao Zhang pbuf2 += len; 576*0e3ece09SJunchao Zhang nz += len; 577*0e3ece09SJunchao Zhang } 578*0e3ece09SJunchao Zhang PetscCall(PetscIntSortSemiOrderedWithArray(nz, jbuf, pbuf)); // It could be improved with k-way merge sort, since the rows are already sorted 579*0e3ece09SJunchao Zhang 580*0e3ece09SJunchao Zhang // Scan column indices (in jbuf[0,nz), might have dups) of this row, and see how many go to Fd and how many go to Fo 581*0e3ece09SJunchao Zhang PetscInt cur = 0; 582*0e3ece09SJunchao Zhang while (cur < nz) { 583*0e3ece09SJunchao Zhang PetscInt curColIdx = jbuf[cur]; 584*0e3ece09SJunchao Zhang PetscInt dups = 1; 585*0e3ece09SJunchao Zhang 586*0e3ece09SJunchao Zhang while (cur + dups < nz && jbuf[cur + dups] == curColIdx) dups++; 587*0e3ece09SJunchao Zhang if (curColIdx >= cstart && curColIdx < cend) { 588*0e3ece09SJunchao Zhang Fdi[curRowIdx]++; 589*0e3ece09SJunchao Zhang FdnzDups += dups; 590*0e3ece09SJunchao Zhang } else { 591*0e3ece09SJunchao Zhang Foi[curRowIdx]++; 592*0e3ece09SJunchao Zhang FonzDups += dups; 593*0e3ece09SJunchao Zhang } 594*0e3ece09SJunchao Zhang cur += dups; 595*0e3ece09SJunchao Zhang } 596*0e3ece09SJunchao Zhang 597*0e3ece09SJunchao Zhang FnzDups += nz; 598*0e3ece09SJunchao Zhang iter += dupRows; // Move to next unique row 599*0e3ece09SJunchao Zhang } 600*0e3ece09SJunchao Zhang 601*0e3ece09SJunchao Zhang Fdi = Fdi_h.data(); // restore Fdi, Foi and make them CSR 602*0e3ece09SJunchao Zhang Foi = Foi_h.data(); 603*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 604*0e3ece09SJunchao Zhang Fdi[i + 1] += Fdi[i]; 605*0e3ece09SJunchao Zhang Foi[i + 1] += Foi[i]; 606*0e3ece09SJunchao Zhang } 607*0e3ece09SJunchao Zhang Fdnz = Fdi[Fm]; 608*0e3ece09SJunchao Zhang Fonz = Foi[Fm]; 609*0e3ece09SJunchao Zhang PetscCall(PetscFree2(sendCol, recvCol)); 610*0e3ece09SJunchao Zhang 611*0e3ece09SJunchao Zhang // Allocate j, jmap, jperm for Fd and Fo 612*0e3ece09SJunchao Zhang MatColIdxKokkosViewHost Fdj_h("Fdj_h", Fdnz), Foj_h("Foj_h", Fonz); 613*0e3ece09SJunchao Zhang MatRowMapKokkosViewHost Fdjmap_h("Fdjmap_h", Fdnz + 1), Fojmap_h("Fojmap_h", Fonz + 1); // +1 to make csr 614*0e3ece09SJunchao Zhang MatRowMapKokkosViewHost Fdjperm_h("Fdjperm_h", FdnzDups), Fojperm_h("Fojperm_h", FonzDups); 615*0e3ece09SJunchao Zhang MatColIdxType *Fdj = Fdj_h.data(), *Foj = Foj_h.data(); 616*0e3ece09SJunchao Zhang MatRowMapType *Fdjmap = Fdjmap_h.data(), *Fojmap = Fojmap_h.data(); 617*0e3ece09SJunchao Zhang MatRowMapType *Fdjperm = Fdjperm_h.data(), *Fojperm = Fojperm_h.data(); 618*0e3ece09SJunchao Zhang 619*0e3ece09SJunchao Zhang // Scan recvColSorted[] again, and fill j, jmap, jperm for Fd and Fo 620*0e3ece09SJunchao Zhang Fdjmap[0] = 0; 621*0e3ece09SJunchao Zhang Fojmap[0] = 0; 622*0e3ece09SJunchao Zhang FnzDups = 0; 623*0e3ece09SJunchao Zhang Fdnz = 0; 624*0e3ece09SJunchao Zhang Fonz = 0; 625*0e3ece09SJunchao Zhang iter = 0; // iter over received rows 626*0e3ece09SJunchao Zhang while (iter < recvRowCnt) { 627*0e3ece09SJunchao Zhang PetscInt curRowIdx = irootloc[recvRowPerm[iter]]; // current row idx 628*0e3ece09SJunchao Zhang PetscInt dupRows = 1; // It has this many contributing rows (of various lengths) 629*0e3ece09SJunchao Zhang PetscInt nz = 0; // nz (with dups) in the current row 630*0e3ece09SJunchao Zhang 631*0e3ece09SJunchao Zhang while (iter + dupRows < recvRowCnt && irootloc[recvRowPerm[iter + dupRows]] == curRowIdx) dupRows++; 632*0e3ece09SJunchao Zhang for (PetscInt d = 0; d < dupRows; d++) { 633*0e3ece09SJunchao Zhang PetscInt i = recvRowPerm[iter + d]; 634*0e3ece09SJunchao Zhang nz += recvRowLen[i + 1] - recvRowLen[i]; 635*0e3ece09SJunchao Zhang } 636*0e3ece09SJunchao Zhang 637*0e3ece09SJunchao Zhang PetscInt *jbuf = recvColSorted + FnzDups; 638*0e3ece09SJunchao Zhang // Scan columns (in jbuf[0,nz) of this row, copy them and their permutation to j[] and jperm[] of Fd and Fo 639*0e3ece09SJunchao Zhang PetscInt cur = 0; 640*0e3ece09SJunchao Zhang while (cur < nz) { 641*0e3ece09SJunchao Zhang PetscInt curColIdx = jbuf[cur]; 642*0e3ece09SJunchao Zhang PetscInt dups = 1; 643*0e3ece09SJunchao Zhang 644*0e3ece09SJunchao Zhang while (cur + dups < nz && jbuf[cur + dups] == curColIdx) dups++; 645*0e3ece09SJunchao Zhang if (curColIdx >= cstart && curColIdx < cend) { 646*0e3ece09SJunchao Zhang Fdj[Fdnz] = curColIdx - cstart; // easily convert to local 647*0e3ece09SJunchao Zhang Fdjmap[Fdnz + 1] = Fdjmap[Fdnz] + dups; 648*0e3ece09SJunchao Zhang for (PetscInt j = 0; j < dups; j++) Fdjperm[Fdjmap[Fdnz] + j] = recvNzPermSorted[FnzDups + j]; 649*0e3ece09SJunchao Zhang FdnzDups += dups; 650*0e3ece09SJunchao Zhang Fdnz++; 651*0e3ece09SJunchao Zhang } else { 652*0e3ece09SJunchao Zhang Foj[Fonz] = curColIdx; // in global 653*0e3ece09SJunchao Zhang Fojmap[Fonz + 1] = Fojmap[Fonz] + dups; 654*0e3ece09SJunchao Zhang for (PetscInt j = 0; j < dups; j++) Fojperm[Fojmap[Fonz] + j] = recvNzPermSorted[FnzDups + j]; 655*0e3ece09SJunchao Zhang FonzDups += dups; 656*0e3ece09SJunchao Zhang Fonz++; 657*0e3ece09SJunchao Zhang } 658*0e3ece09SJunchao Zhang cur += dups; 659*0e3ece09SJunchao Zhang FnzDups += dups; 660*0e3ece09SJunchao Zhang } 661*0e3ece09SJunchao Zhang iter += dupRows; // Move to next unique row 662*0e3ece09SJunchao Zhang } 663*0e3ece09SJunchao Zhang PetscCall(PetscFree4(recvRowPerm, recvColSorted, recvNzPerm, recvNzPermSorted)); 664*0e3ece09SJunchao Zhang PetscCall(PetscFree5(sendRowLen, recvRowLen, sdisp, rdisp, reqs)); 665*0e3ece09SJunchao Zhang 666*0e3ece09SJunchao Zhang // Combine global column indices in garray1[] and Foj[] 667*0e3ece09SJunchao Zhang PetscInt n2, *garray2; 668*0e3ece09SJunchao Zhang 669*0e3ece09SJunchao Zhang PetscCall(ReduceTwoSetsOfGlobalIndices(n1, garray1, Fonz, Foj, &n2, &garray2, map)); 670*0e3ece09SJunchao Zhang mm->sf = reduceSF; 671*0e3ece09SJunchao Zhang mm->leafBuf = MatScalarKokkosView("leafBuf", nleaves); 672*0e3ece09SJunchao Zhang mm->rootBuf = MatScalarKokkosView("rootBuf", nroots); 673*0e3ece09SJunchao Zhang mm->garray = garray2; // give owership, so no free 674*0e3ece09SJunchao Zhang mm->n = n2; 675*0e3ece09SJunchao Zhang mm->E_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), E_NzLeft_h); 676*0e3ece09SJunchao Zhang mm->Fdjmap = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdjmap_h); 677*0e3ece09SJunchao Zhang mm->Fdjperm = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdjperm_h); 678*0e3ece09SJunchao Zhang mm->Fojmap = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fojmap_h); 679*0e3ece09SJunchao Zhang mm->Fojperm = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fojperm_h); 680*0e3ece09SJunchao Zhang 681*0e3ece09SJunchao Zhang // Output Fd and Fo in KokkosCsrMatrix format 682*0e3ece09SJunchao Zhang MatScalarKokkosView Fda_d("Fda_d", Fdnz); 683*0e3ece09SJunchao Zhang MatRowMapKokkosView Fdi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdi_h); 684*0e3ece09SJunchao Zhang MatColIdxKokkosView Fdj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdj_h); 685*0e3ece09SJunchao Zhang MatScalarKokkosView Foa_d("Foa_d", Fonz); 686*0e3ece09SJunchao Zhang MatRowMapKokkosView Foi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foi_h); 687*0e3ece09SJunchao Zhang MatColIdxKokkosView Foj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foj_h); 688*0e3ece09SJunchao Zhang 689*0e3ece09SJunchao Zhang PetscCallCXX(mm->Fd = KokkosCsrMatrix("Fd", Fm, cend - cstart, Fdnz, Fda_d, Fdi_d, Fdj_d)); 690*0e3ece09SJunchao Zhang PetscCallCXX(mm->Fo = KokkosCsrMatrix("Fo", Fm, n2, Fonz, Foa_d, Foi_d, Foj_d)); // Fo's column size is n2, length of garray2[] 691*0e3ece09SJunchao Zhang 692*0e3ece09SJunchao Zhang // Compute kernel launch parameters in merging E 693*0e3ece09SJunchao Zhang PetscInt teamSize, vectorLength, rowsPerTeam; 694*0e3ece09SJunchao Zhang 695*0e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 696*0e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(Em, Enz, -1, teamSize, vectorLength, rowsPerTeam)); 697*0e3ece09SJunchao Zhang mm->E_TeamSize = teamSize; 698*0e3ece09SJunchao Zhang mm->E_VectorLength = vectorLength; 699*0e3ece09SJunchao Zhang mm->E_RowsPerTeam = rowsPerTeam; 700*0e3ece09SJunchao Zhang } else PetscCheck(reuse == MAT_REUSE_MATRIX, comm, PETSC_ERR_PLIB, "Unsupported MatReuse enum %d", reuse); 701*0e3ece09SJunchao Zhang 702*0e3ece09SJunchao Zhang // Handy aliases 703*0e3ece09SJunchao Zhang auto &Aa = A.values; 704*0e3ece09SJunchao Zhang auto &Ba = B.values; 705*0e3ece09SJunchao Zhang const auto &Ai = A.graph.row_map; 706*0e3ece09SJunchao Zhang const auto &Bi = B.graph.row_map; 707*0e3ece09SJunchao Zhang const auto &E_NzLeft = mm->E_NzLeft; 708*0e3ece09SJunchao Zhang auto &leafBuf = mm->leafBuf; 709*0e3ece09SJunchao Zhang auto &rootBuf = mm->rootBuf; 710*0e3ece09SJunchao Zhang PetscSF reduceSF = mm->sf; 711*0e3ece09SJunchao Zhang PetscInt Em = A.numRows(); 712*0e3ece09SJunchao Zhang PetscInt teamSize = mm->E_TeamSize; 713*0e3ece09SJunchao Zhang PetscInt vectorLength = mm->E_VectorLength; 714*0e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->E_RowsPerTeam; 715*0e3ece09SJunchao Zhang PetscInt workSets = (Em + rowsPerTeam - 1) / rowsPerTeam; 716*0e3ece09SJunchao Zhang 717*0e3ece09SJunchao Zhang // Copy rows in A/B of E to leafBuf, then pass it to rootBuf 718*0e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 719*0e3ece09SJunchao Zhang Kokkos::TeamPolicy<>(workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 720*0e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 721*0e3ece09SJunchao Zhang PetscInt i = t.league_rank() * rowsPerTeam + k; // i-th row in F 722*0e3ece09SJunchao Zhang if (i < Em) { 723*0e3ece09SJunchao Zhang PetscInt disp = Ai(i) + Bi(i); 724*0e3ece09SJunchao Zhang PetscInt alen = Ai(i + 1) - Ai(i); 725*0e3ece09SJunchao Zhang PetscInt blen = Bi(i + 1) - Bi(i); 726*0e3ece09SJunchao Zhang PetscInt nzleft = E_NzLeft(i); 727*0e3ece09SJunchao Zhang 728*0e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 729*0e3ece09SJunchao Zhang MatScalar &val = leafBuf(disp + j); 730*0e3ece09SJunchao Zhang if (j < nzleft) { // B left 731*0e3ece09SJunchao Zhang val = Ba(Bi(i) + j); 732*0e3ece09SJunchao Zhang } else if (j < nzleft + alen) { // diag A 733*0e3ece09SJunchao Zhang val = Aa(Ai(i) + j - nzleft); 734*0e3ece09SJunchao Zhang } else { // B right 735*0e3ece09SJunchao Zhang val = Ba(Bi(i) + j - alen); 736f0e6e2d1SJunchao Zhang } 737f0e6e2d1SJunchao Zhang }); 738f0e6e2d1SJunchao Zhang } 739f0e6e2d1SJunchao Zhang }); 740*0e3ece09SJunchao Zhang })); 741*0e3ece09SJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(reduceSF, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, leafBuf.data(), PETSC_MEMTYPE_KOKKOS, rootBuf.data(), MPI_REPLACE)); 742f0e6e2d1SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 743f0e6e2d1SJunchao Zhang } 744*0e3ece09SJunchao Zhang 745*0e3ece09SJunchao Zhang // To finsih MatMPIAIJKokkosReduce. 746*0e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosReduceEnd(MPI_Comm comm, KokkosCsrMatrix A, KokkosCsrMatrix B, PetscInt cstart, PetscInt cend, const PetscInt *garray1, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AtB *mm) 747*0e3ece09SJunchao Zhang { 748*0e3ece09SJunchao Zhang PetscFunctionBegin; 749*0e3ece09SJunchao Zhang auto &leafBuf = mm->leafBuf; 750*0e3ece09SJunchao Zhang auto &rootBuf = mm->rootBuf; 751*0e3ece09SJunchao Zhang auto &Fda = mm->Fd.values; 752*0e3ece09SJunchao Zhang const auto &Fdjmap = mm->Fdjmap; 753*0e3ece09SJunchao Zhang const auto &Fdjperm = mm->Fdjperm; 754*0e3ece09SJunchao Zhang auto Fdnz = mm->Fd.nnz(); 755*0e3ece09SJunchao Zhang auto &Foa = mm->Fo.values; 756*0e3ece09SJunchao Zhang const auto &Fojmap = mm->Fojmap; 757*0e3ece09SJunchao Zhang const auto &Fojperm = mm->Fojperm; 758*0e3ece09SJunchao Zhang auto Fonz = mm->Fo.nnz(); 759*0e3ece09SJunchao Zhang PetscSF reduceSF = mm->sf; 760*0e3ece09SJunchao Zhang 761*0e3ece09SJunchao Zhang PetscCall(PetscSFReduceEnd(reduceSF, MPIU_SCALAR, leafBuf.data(), rootBuf.data(), MPI_REPLACE)); 762*0e3ece09SJunchao Zhang 763*0e3ece09SJunchao Zhang // Reduce data in rootBuf to Fd and Fo 764*0e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 765*0e3ece09SJunchao Zhang Fdnz, KOKKOS_LAMBDA(const MatRowMapType i) { 766*0e3ece09SJunchao Zhang PetscScalar sum = 0.0; 767*0e3ece09SJunchao Zhang for (MatRowMapType k = Fdjmap(i); k < Fdjmap(i + 1); k++) sum += rootBuf(Fdjperm(k)); 768*0e3ece09SJunchao Zhang Fda(i) = sum; 769*0e3ece09SJunchao Zhang })); 770*0e3ece09SJunchao Zhang 771*0e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 772*0e3ece09SJunchao Zhang Fonz, KOKKOS_LAMBDA(const MatRowMapType i) { 773*0e3ece09SJunchao Zhang PetscScalar sum = 0.0; 774*0e3ece09SJunchao Zhang for (MatRowMapType k = Fojmap(i); k < Fojmap(i + 1); k++) sum += rootBuf(Fojperm(k)); 775*0e3ece09SJunchao Zhang Foa(i) = sum; 776*0e3ece09SJunchao Zhang })); 777*0e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 778*0e3ece09SJunchao Zhang } 779*0e3ece09SJunchao Zhang 780*0e3ece09SJunchao Zhang /* 781*0e3ece09SJunchao Zhang MatMPIAIJKokkosBcast - Bcast local rows of a MPIAIJKOKKOS matrix (E) to produce a local matrix (F, stored in mm) in split form 782*0e3ece09SJunchao Zhang 783*0e3ece09SJunchao Zhang This is a complex routine. It is essentially the MPIAIJKOKKOS counterpart of MatGetBrowsOfAoCols_MPIAIJ, but supports 784*0e3ece09SJunchao Zhang device and involves various index mapping. 785*0e3ece09SJunchao Zhang 786*0e3ece09SJunchao Zhang In the given ownerSF, leaves correspond to rows in F, and roots correspond to rows in E. Roots may connect to multiple leaves. 787*0e3ece09SJunchao Zhang Suppose F's j-th row is connected to a root identified by PetscSFNode (k,i), it means we need to bcast the i-th row of E on rank k 788*0e3ece09SJunchao Zhang to j-th row of F. ownerSF is not an arbitrary SF, instead it is the Mvctx of another MPIAIJ matrix A that is able to perform A*E. 789*0e3ece09SJunchao Zhang F has the same column layout as E. 790*0e3ece09SJunchao Zhang 791*0e3ece09SJunchao Zhang Conceptually F has global column indices. In this routine, we spit F into diagonal Fd and off-diagonal Fo. 792*0e3ece09SJunchao Zhang Fd uses local column indices, which are easy to compute. We just need to substract the "local column range start" from the global indices. 793*0e3ece09SJunchao Zhang Fo had global column indices at first. We will reduce them into local ones. In doing that, we also take into account the global 794*0e3ece09SJunchao Zhang column indices that E's off-diag block has. Let's say there are n1 such indices stored in garray1[]. We will reduce them along with 795*0e3ece09SJunchao Zhang column indices in Fo and update Fo with local indices. 796*0e3ece09SJunchao Zhang 797*0e3ece09SJunchao Zhang Input Parameters: 798*0e3ece09SJunchao Zhang + E - the MPIAIJKOKKOS matrix 799*0e3ece09SJunchao Zhang . ownerSF - the ownership SF (nonsignificant in MAT_REUSE_MATRIX) 800*0e3ece09SJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 801*0e3ece09SJunchao Zhang - mm - to stash matproduct intermediate data structures 802*0e3ece09SJunchao Zhang 803*0e3ece09SJunchao Zhang Output Parameters: 804*0e3ece09SJunchao Zhang + map[n1] - allocated by caller. It maps garray1[] to garray2[]. See more at ReduceTwoSetsOfGlobalIndices. 805*0e3ece09SJunchao Zhang - mm - contains various info, such as garray2[], Fd, Fo, etc. 806*0e3ece09SJunchao Zhang 807*0e3ece09SJunchao Zhang Notes: 808*0e3ece09SJunchao Zhang When reuse = MAT_REUSE_MATRIX, ownerSF, map are not significant. 809*0e3ece09SJunchao Zhang The routine is provide in split-phase form MatMPIAIJKokkosBcastBegin/End() to provide computation/communication opportunities. 810*0e3ece09SJunchao Zhang */ 811*0e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosBcastBegin(Mat E, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AB *mm) 812*0e3ece09SJunchao Zhang { 813*0e3ece09SJunchao Zhang Mat_MPIAIJ *empi = static_cast<Mat_MPIAIJ *>(E->data); 814*0e3ece09SJunchao Zhang Mat A = empi->A, B = empi->B; // diag and off-diag 815*0e3ece09SJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos *>(A->spptr), *bkok = static_cast<Mat_SeqAIJKokkos *>(B->spptr); 816*0e3ece09SJunchao Zhang PetscInt Em = E->rmap->n; // #local rows 817*0e3ece09SJunchao Zhang MPI_Comm comm; 818*0e3ece09SJunchao Zhang 819*0e3ece09SJunchao Zhang PetscFunctionBegin; 820*0e3ece09SJunchao Zhang PetscCallMPI(PetscObjectGetComm((PetscObject)E, &comm)); 821*0e3ece09SJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 822*0e3ece09SJunchao Zhang Mat_SeqAIJ *aseq = static_cast<Mat_SeqAIJ *>(A->data), *bseq = static_cast<Mat_SeqAIJ *>(B->data); 823*0e3ece09SJunchao Zhang PetscInt n1 = B->cmap->n, *Ai = aseq->i, *Aj = aseq->j, *Bi = bseq->i, *Bj = bseq->j; 824*0e3ece09SJunchao Zhang const PetscInt *garray1 = empi->garray; // its size is n1 825*0e3ece09SJunchao Zhang PetscInt cstart, cend; 826*0e3ece09SJunchao Zhang PetscSF bcastSF; 827*0e3ece09SJunchao Zhang 828*0e3ece09SJunchao Zhang PetscCall(MatGetOwnershipRangeColumn(E, &cstart, &cend)); 829*0e3ece09SJunchao Zhang 830*0e3ece09SJunchao Zhang // Count how many nonzeros of each row in E are in the left of the diag block [cstart,cend) 831*0e3ece09SJunchao Zhang PetscIntKokkosViewHost E_NzLeft_h("E_NzLeft_h", Em), E_RowLen_h("E_RowLen_h", Em); 832*0e3ece09SJunchao Zhang PetscInt *E_NzLeft = E_NzLeft_h.data(), *E_RowLen = E_RowLen_h.data(); 833*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) { 834*0e3ece09SJunchao Zhang const PetscInt *first, *last, *it; 835*0e3ece09SJunchao Zhang PetscInt count, step; 836*0e3ece09SJunchao Zhang // std::lower_bound(first,last,cstart), but need to use global column indices 837*0e3ece09SJunchao Zhang first = Bj + Bi[i]; 838*0e3ece09SJunchao Zhang last = Bj + Bi[i + 1]; 839*0e3ece09SJunchao Zhang count = last - first; 840*0e3ece09SJunchao Zhang while (count > 0) { 841*0e3ece09SJunchao Zhang it = first; 842*0e3ece09SJunchao Zhang step = count / 2; 843*0e3ece09SJunchao Zhang it += step; 844*0e3ece09SJunchao Zhang if (empi->garray[*it] < cstart) { // map local to global 845*0e3ece09SJunchao Zhang first = ++it; 846*0e3ece09SJunchao Zhang count -= step + 1; 847*0e3ece09SJunchao Zhang } else count = step; 848*0e3ece09SJunchao Zhang } 849*0e3ece09SJunchao Zhang E_NzLeft[i] = first - (Bj + Bi[i]); 850*0e3ece09SJunchao Zhang E_RowLen[i] = (Ai[i + 1] - Ai[i]) + (Bi[i + 1] - Bi[i]); 851*0e3ece09SJunchao Zhang } 852*0e3ece09SJunchao Zhang 853*0e3ece09SJunchao Zhang // Compute row pointer Fi of F 854*0e3ece09SJunchao Zhang PetscInt *Fi, Fm, Fnz; 855*0e3ece09SJunchao Zhang PetscCall(PetscSFGetGraph(ownerSF, NULL, &Fm, NULL, NULL)); // Fm = #rows of F = nleaves of ownerSF 856*0e3ece09SJunchao Zhang PetscCall(PetscMalloc1(Fm + 1, &Fi)); 857*0e3ece09SJunchao Zhang Fi[0] = 0; 858*0e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(ownerSF, MPIU_INT, PETSC_MEMTYPE_HOST, E_RowLen, PETSC_MEMTYPE_HOST, &Fi[1], MPI_REPLACE)); 859*0e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(ownerSF, MPIU_INT, E_RowLen, &Fi[1], MPI_REPLACE)); 860*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) Fi[i + 1] += Fi[i]; 861*0e3ece09SJunchao Zhang Fnz = Fi[Fm]; 862*0e3ece09SJunchao Zhang 863*0e3ece09SJunchao Zhang // Build the real PetscSF for bcasting E rows (buffer to buffer) 864*0e3ece09SJunchao Zhang const PetscMPIInt *iranks, *ranks; 865*0e3ece09SJunchao Zhang const PetscInt *ioffset, *irootloc, *roffset; 866*0e3ece09SJunchao Zhang PetscInt niranks, nranks, *sdisp, *rdisp; 867*0e3ece09SJunchao Zhang MPI_Request *reqs; 868*0e3ece09SJunchao Zhang PetscMPIInt tag; 869*0e3ece09SJunchao Zhang 870*0e3ece09SJunchao Zhang PetscCall(PetscSFGetLeafRanks(ownerSF, &niranks, &iranks, &ioffset, &irootloc)); // get leaf ranks referencing roots on this process 871*0e3ece09SJunchao Zhang PetscCall(PetscSFGetRootRanks(ownerSF, &nranks, &ranks, &roffset, NULL, NULL)); // recv info 872*0e3ece09SJunchao Zhang PetscCall(PetscMalloc3(niranks + 1, &sdisp, nranks, &rdisp, niranks + nranks, &reqs)); 873*0e3ece09SJunchao Zhang 874*0e3ece09SJunchao Zhang sdisp[0] = 0; // send displacement 875*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { 876*0e3ece09SJunchao Zhang sdisp[i + 1] = sdisp[i]; 877*0e3ece09SJunchao Zhang for (PetscInt j = ioffset[i]; j < ioffset[i + 1]; j++) { 878*0e3ece09SJunchao Zhang PetscInt r = irootloc[j]; // row to be sent 879*0e3ece09SJunchao Zhang sdisp[i + 1] += E_RowLen[r]; 880*0e3ece09SJunchao Zhang } 881*0e3ece09SJunchao Zhang } 882*0e3ece09SJunchao Zhang 883*0e3ece09SJunchao Zhang PetscCallMPI(PetscCommGetNewTag(comm, &tag)); 884*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) PetscCallMPI(MPI_Irecv(&rdisp[i], 1, MPIU_INT, ranks[i], tag, comm, &reqs[i])); 885*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) PetscCallMPI(MPI_Isend(&sdisp[i], 1, MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i])); 886*0e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(niranks + nranks, reqs, MPI_STATUSES_IGNORE)); 887*0e3ece09SJunchao Zhang 888*0e3ece09SJunchao Zhang PetscInt nleaves = Fnz; // leaves are nonzeros I will receive 889*0e3ece09SJunchao Zhang PetscInt nroots = sdisp[niranks]; // roots are nonzeros I will send 890*0e3ece09SJunchao Zhang PetscSFNode *iremote; // give ownership to bcastSF 891*0e3ece09SJunchao Zhang PetscCall(PetscMalloc1(nleaves, &iremote)); 892*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { // for each sender rank 893*0e3ece09SJunchao Zhang PetscInt k = 0; 894*0e3ece09SJunchao Zhang for (PetscInt j = Fi[roffset[i]]; j < Fi[roffset[i + 1]]; j++) { // I will receive rows [roffset[i], roffset[i+1]) of F from ranks[i] 895*0e3ece09SJunchao Zhang iremote[j].rank = ranks[i]; 896*0e3ece09SJunchao Zhang iremote[j].index = rdisp[i] + k; // their root location 897*0e3ece09SJunchao Zhang k++; 898*0e3ece09SJunchao Zhang } 899*0e3ece09SJunchao Zhang } 900*0e3ece09SJunchao Zhang PetscCall(PetscSFCreate(comm, &bcastSF)); 901*0e3ece09SJunchao Zhang PetscCall(PetscSFSetGraph(bcastSF, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 902*0e3ece09SJunchao Zhang PetscCall(PetscFree3(sdisp, rdisp, reqs)); 903*0e3ece09SJunchao Zhang 904*0e3ece09SJunchao Zhang // Build a plan (rowoffset, irootloc, E_NzLeft) to copy rows in E to rootdata of bcastSF in parallel 905*0e3ece09SJunchao Zhang PetscIntKokkosViewHost rowoffset_h("rowoffset_h", ioffset[niranks] + 1); 906*0e3ece09SJunchao Zhang PetscInt *rowoffset = rowoffset_h.data(); // for each entry (row) indicated in irootloc[], we calculate its destinate offset in copying 907*0e3ece09SJunchao Zhang rowoffset[0] = 0; 908*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < ioffset[niranks]; i++) { rowoffset[i + 1] += rowoffset[i] + E_RowLen[irootloc[i]]; } 909*0e3ece09SJunchao Zhang 910*0e3ece09SJunchao Zhang // Copy (global) column indices of the needed rows in E to a buffer, and then bcast to Fj[] 911*0e3ece09SJunchao Zhang PetscInt *jbuf, *Fj; 912*0e3ece09SJunchao Zhang PetscCall(PetscMalloc2(nroots, &jbuf, Fnz, &Fj)); 913*0e3ece09SJunchao Zhang for (PetscInt k = 0; k < ioffset[niranks]; k++) { 914*0e3ece09SJunchao Zhang PetscInt i = irootloc[k]; // row to be copied 915*0e3ece09SJunchao Zhang PetscInt *buf = &jbuf[rowoffset[k]]; 916*0e3ece09SJunchao Zhang PetscInt nzLeft = E_NzLeft[i]; 917*0e3ece09SJunchao Zhang PetscInt alen = Ai[i + 1] - Ai[i], blen = Bi[i + 1] - Bi[i]; 918*0e3ece09SJunchao Zhang for (PetscInt j = 0; j < alen + blen; j++) { 919*0e3ece09SJunchao Zhang if (j < nzLeft) { 920*0e3ece09SJunchao Zhang buf[j] = empi->garray[Bj[Bi[i] + j]]; // left B, in global 921*0e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { 922*0e3ece09SJunchao Zhang buf[j] = Aj[Ai[i] + j - nzLeft] + cstart; // diag A, also in global 923*0e3ece09SJunchao Zhang } else { 924*0e3ece09SJunchao Zhang buf[j] = empi->garray[Bj[Bi[i] + j - alen]]; // right B, in global 925*0e3ece09SJunchao Zhang } 926*0e3ece09SJunchao Zhang } 927*0e3ece09SJunchao Zhang } 928*0e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(bcastSF, MPIU_INT, PETSC_MEMTYPE_HOST, jbuf, PETSC_MEMTYPE_HOST, Fj, MPI_REPLACE)); 929*0e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(bcastSF, MPIU_INT, jbuf, Fj, MPI_REPLACE)); 930*0e3ece09SJunchao Zhang 931*0e3ece09SJunchao Zhang // Build a plan (i.e., F_NzLeft) to split F into Fd and Fo 932*0e3ece09SJunchao Zhang MatRowMapKokkosViewHost Fdi_h("Fdi_h", Fm + 1), Foi_h("Foi_h", Fm + 1); // row pointer of Fd, Fo 933*0e3ece09SJunchao Zhang MatColIdxKokkosViewHost F_NzLeft_h("F_NzLeft_h", Fm); // split each row of F into Left, Diag, Right. We only need to record #nz in Left and Diag. 934*0e3ece09SJunchao Zhang MatRowMapType *Fdi = Fdi_h.data(), *Foi = Foi_h.data(); 935*0e3ece09SJunchao Zhang MatColIdxType *F_NzLeft = F_NzLeft_h.data(); 936*0e3ece09SJunchao Zhang 937*0e3ece09SJunchao Zhang Fdi[0] = Foi[0] = 0; 938*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 939*0e3ece09SJunchao Zhang PetscInt *first, *last, *lb1, *lb2; 940*0e3ece09SJunchao Zhang // cut the row into: Left, [cstart, cend), Right 941*0e3ece09SJunchao Zhang first = Fj + Fi[i]; 942*0e3ece09SJunchao Zhang last = Fj + Fi[i + 1]; 943*0e3ece09SJunchao Zhang lb1 = std::lower_bound(first, last, cstart); 944*0e3ece09SJunchao Zhang F_NzLeft[i] = lb1 - first; 945*0e3ece09SJunchao Zhang lb2 = std::lower_bound(first, last, cend); 946*0e3ece09SJunchao Zhang Fdi[i + 1] = lb2 - lb1; // row i length in Fdi 947*0e3ece09SJunchao Zhang Foi[i + 1] = (Fi[i + 1] - Fi[i]) - Fdi[i + 1]; // row i length in Foi 948*0e3ece09SJunchao Zhang } 949*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 950*0e3ece09SJunchao Zhang Fdi[i + 1] += Fdi[i]; 951*0e3ece09SJunchao Zhang Foi[i + 1] += Foi[i]; 952*0e3ece09SJunchao Zhang } 953*0e3ece09SJunchao Zhang 954*0e3ece09SJunchao Zhang // Fill Fdj[] and Foj[], i.e., columns of Fd and Fo. Fdj[] are local, but Foj[] are not yet. 955*0e3ece09SJunchao Zhang PetscInt Fdnz = Fdi[Fm], Fonz = Foi[Fm]; 956*0e3ece09SJunchao Zhang MatColIdxKokkosViewHost Fdj_h("Fdj_h", Fdnz), Foj_h("Foj_h", Fonz); 957*0e3ece09SJunchao Zhang MatColIdxType *Fdj = Fdj_h.data(), *Foj = Foj_h.data(), gid; 958*0e3ece09SJunchao Zhang 959*0e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 960*0e3ece09SJunchao Zhang PetscInt nzLeft = F_NzLeft[i]; 961*0e3ece09SJunchao Zhang PetscInt len = Fdi[i + 1] - Fdi[i]; // diag row len 962*0e3ece09SJunchao Zhang for (PetscInt j = 0; j < Fi[i + 1] - Fi[i]; j++) { 963*0e3ece09SJunchao Zhang gid = Fj[Fi[i] + j]; 964*0e3ece09SJunchao Zhang if (j < nzLeft) { // left, in global 965*0e3ece09SJunchao Zhang Foj[Foi[i] + j] = gid; 966*0e3ece09SJunchao Zhang } else if (j < nzLeft + len) { // diag, in local 967*0e3ece09SJunchao Zhang Fdj[Fdi[i] + j - nzLeft] = gid - cstart; 968*0e3ece09SJunchao Zhang } else { // right, in global 969*0e3ece09SJunchao Zhang Foj[Foi[i] + j - len] = gid; 970*0e3ece09SJunchao Zhang } 971*0e3ece09SJunchao Zhang } 972*0e3ece09SJunchao Zhang } 973*0e3ece09SJunchao Zhang PetscCall(PetscFree2(jbuf, Fj)); 974*0e3ece09SJunchao Zhang PetscCall(PetscFree(Fi)); 975*0e3ece09SJunchao Zhang 976*0e3ece09SJunchao Zhang // Reduce global indices in Foj[] and garray1[] into local ones 977*0e3ece09SJunchao Zhang PetscInt n2, *garray2; 978*0e3ece09SJunchao Zhang PetscCall(ReduceTwoSetsOfGlobalIndices(n1, garray1, Fonz, Foj, &n2, &garray2, map)); 979*0e3ece09SJunchao Zhang 980*0e3ece09SJunchao Zhang // Record the plans built above, for reuse 981*0e3ece09SJunchao Zhang PetscIntKokkosViewHost tmp(const_cast<PetscInt *>(irootloc), ioffset[niranks]); // irootloc[] is owned by ownerSF. We create a copy for safety 982*0e3ece09SJunchao Zhang PetscIntKokkosViewHost irootloc_h("irootloc_h", ioffset[niranks]); 983*0e3ece09SJunchao Zhang Kokkos::deep_copy(irootloc_h, tmp); 984*0e3ece09SJunchao Zhang mm->sf = bcastSF; 985*0e3ece09SJunchao Zhang mm->E_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), E_NzLeft_h); 986*0e3ece09SJunchao Zhang mm->F_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), F_NzLeft_h); 987*0e3ece09SJunchao Zhang mm->irootloc = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), irootloc_h); 988*0e3ece09SJunchao Zhang mm->rowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), rowoffset_h); 989*0e3ece09SJunchao Zhang mm->rootBuf = MatScalarKokkosView("rootBuf", nroots); 990*0e3ece09SJunchao Zhang mm->leafBuf = MatScalarKokkosView("leafBuf", nleaves); 991*0e3ece09SJunchao Zhang mm->garray = garray2; 992*0e3ece09SJunchao Zhang mm->n = n2; 993*0e3ece09SJunchao Zhang 994*0e3ece09SJunchao Zhang // Output Fd and Fo in KokkosCsrMatrix format 995*0e3ece09SJunchao Zhang MatScalarKokkosView Fda_d("Fda_d", Fdnz), Foa_d("Foa_d", Fonz); 996*0e3ece09SJunchao Zhang MatRowMapKokkosView Fdi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdi_h); 997*0e3ece09SJunchao Zhang MatColIdxKokkosView Fdj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdj_h); 998*0e3ece09SJunchao Zhang MatRowMapKokkosView Foi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foi_h); 999*0e3ece09SJunchao Zhang MatColIdxKokkosView Foj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foj_h); 1000*0e3ece09SJunchao Zhang 1001*0e3ece09SJunchao Zhang PetscCallCXX(mm->Fd = KokkosCsrMatrix("Fd", Fm, cend - cstart, Fdnz, Fda_d, Fdi_d, Fdj_d)); 1002*0e3ece09SJunchao Zhang PetscCallCXX(mm->Fo = KokkosCsrMatrix("Fo", Fm, n2, Fonz, Foa_d, Foi_d, Foj_d)); 1003*0e3ece09SJunchao Zhang 1004*0e3ece09SJunchao Zhang // Compute kernel launch parameters in merging E or splitting F 1005*0e3ece09SJunchao Zhang PetscInt teamSize, vectorLength, rowsPerTeam; 1006*0e3ece09SJunchao Zhang 1007*0e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 1008*0e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(mm->irootloc.extent(0), mm->rootBuf.extent(0), -1, teamSize, vectorLength, rowsPerTeam)); 1009*0e3ece09SJunchao Zhang mm->E_TeamSize = teamSize; 1010*0e3ece09SJunchao Zhang mm->E_VectorLength = vectorLength; 1011*0e3ece09SJunchao Zhang mm->E_RowsPerTeam = rowsPerTeam; 1012*0e3ece09SJunchao Zhang 1013*0e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 1014*0e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(Fm, Fnz, -1, teamSize, vectorLength, rowsPerTeam)); 1015*0e3ece09SJunchao Zhang mm->F_TeamSize = teamSize; 1016*0e3ece09SJunchao Zhang mm->F_VectorLength = vectorLength; 1017*0e3ece09SJunchao Zhang mm->F_RowsPerTeam = rowsPerTeam; 1018*0e3ece09SJunchao Zhang } else PetscCheck(reuse == MAT_REUSE_MATRIX, comm, PETSC_ERR_PLIB, "Unsupported MatReuse enum %d", reuse); 1019*0e3ece09SJunchao Zhang 1020*0e3ece09SJunchao Zhang // Sync E's value to device 1021*0e3ece09SJunchao Zhang akok->a_dual.sync_device(); 1022*0e3ece09SJunchao Zhang bkok->a_dual.sync_device(); 1023*0e3ece09SJunchao Zhang 1024*0e3ece09SJunchao Zhang // Handy aliases 1025*0e3ece09SJunchao Zhang const auto &Aa = akok->a_dual.view_device(); 1026*0e3ece09SJunchao Zhang const auto &Ba = bkok->a_dual.view_device(); 1027*0e3ece09SJunchao Zhang const auto &Ai = akok->i_dual.view_device(); 1028*0e3ece09SJunchao Zhang const auto &Bi = bkok->i_dual.view_device(); 1029*0e3ece09SJunchao Zhang 1030*0e3ece09SJunchao Zhang // Fetch the plans 1031*0e3ece09SJunchao Zhang PetscIntKokkosView &E_NzLeft = mm->E_NzLeft; 1032*0e3ece09SJunchao Zhang PetscSF &bcastSF = mm->sf; 1033*0e3ece09SJunchao Zhang MatScalarKokkosView &rootBuf = mm->rootBuf; 1034*0e3ece09SJunchao Zhang MatScalarKokkosView &leafBuf = mm->leafBuf; 1035*0e3ece09SJunchao Zhang PetscIntKokkosView &irootloc = mm->irootloc; 1036*0e3ece09SJunchao Zhang PetscIntKokkosView &rowoffset = mm->rowoffset; 1037*0e3ece09SJunchao Zhang 1038*0e3ece09SJunchao Zhang PetscInt teamSize = mm->E_TeamSize; 1039*0e3ece09SJunchao Zhang PetscInt vectorLength = mm->E_VectorLength; 1040*0e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->E_RowsPerTeam; 1041*0e3ece09SJunchao Zhang PetscInt workSets = (irootloc.extent(0) + rowsPerTeam - 1) / rowsPerTeam; 1042*0e3ece09SJunchao Zhang 1043*0e3ece09SJunchao Zhang // Copy rows in A/B of E to rootBuf, then bcast it to leafBuf 1044*0e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 1045*0e3ece09SJunchao Zhang Kokkos::TeamPolicy<>(workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 1046*0e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 1047*0e3ece09SJunchao Zhang size_t r = t.league_rank() * rowsPerTeam + k; // r-th entry in irootloc[] 1048*0e3ece09SJunchao Zhang if (r < irootloc.extent(0)) { 1049*0e3ece09SJunchao Zhang PetscInt i = irootloc(r); // row i of E 1050*0e3ece09SJunchao Zhang PetscInt disp = rowoffset(r); 1051*0e3ece09SJunchao Zhang PetscInt alen = Ai(i + 1) - Ai(i); 1052*0e3ece09SJunchao Zhang PetscInt blen = Bi(i + 1) - Bi(i); 1053*0e3ece09SJunchao Zhang PetscInt nzleft = E_NzLeft(i); 1054*0e3ece09SJunchao Zhang 1055*0e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 1056*0e3ece09SJunchao Zhang if (j < nzleft) { // B left 1057*0e3ece09SJunchao Zhang rootBuf(disp + j) = Ba(Bi(i) + j); 1058*0e3ece09SJunchao Zhang } else if (j < nzleft + alen) { // diag A 1059*0e3ece09SJunchao Zhang rootBuf(disp + j) = Aa(Ai(i) + j - nzleft); 1060*0e3ece09SJunchao Zhang } else { // B right 1061*0e3ece09SJunchao Zhang rootBuf(disp + j) = Ba(Bi(i) + j - alen); 1062*0e3ece09SJunchao Zhang } 1063*0e3ece09SJunchao Zhang }); 1064*0e3ece09SJunchao Zhang } 1065*0e3ece09SJunchao Zhang }); 1066*0e3ece09SJunchao Zhang })); 1067*0e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(bcastSF, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, rootBuf.data(), PETSC_MEMTYPE_KOKKOS, leafBuf.data(), MPI_REPLACE)); 1068*0e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 1069*0e3ece09SJunchao Zhang } 1070*0e3ece09SJunchao Zhang 1071*0e3ece09SJunchao Zhang // To finish MatMPIAIJKokkosBcast. 1072*0e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosBcastEnd(Mat E, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AB *mm) 1073*0e3ece09SJunchao Zhang { 1074*0e3ece09SJunchao Zhang PetscFunctionBegin; 1075*0e3ece09SJunchao Zhang const auto &Fd = mm->Fd; 1076*0e3ece09SJunchao Zhang const auto &Fo = mm->Fo; 1077*0e3ece09SJunchao Zhang const auto &Fdi = Fd.graph.row_map; 1078*0e3ece09SJunchao Zhang const auto &Foi = Fo.graph.row_map; 1079*0e3ece09SJunchao Zhang auto &Fda = Fd.values; 1080*0e3ece09SJunchao Zhang auto &Foa = Fo.values; 1081*0e3ece09SJunchao Zhang auto Fm = Fd.numRows(); 1082*0e3ece09SJunchao Zhang 1083*0e3ece09SJunchao Zhang PetscIntKokkosView &F_NzLeft = mm->F_NzLeft; 1084*0e3ece09SJunchao Zhang PetscSF &bcastSF = mm->sf; 1085*0e3ece09SJunchao Zhang MatScalarKokkosView &rootBuf = mm->rootBuf; 1086*0e3ece09SJunchao Zhang MatScalarKokkosView &leafBuf = mm->leafBuf; 1087*0e3ece09SJunchao Zhang PetscInt teamSize = mm->F_TeamSize; 1088*0e3ece09SJunchao Zhang PetscInt vectorLength = mm->F_VectorLength; 1089*0e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->F_RowsPerTeam; 1090*0e3ece09SJunchao Zhang PetscInt workSets = (Fm + rowsPerTeam - 1) / rowsPerTeam; 1091*0e3ece09SJunchao Zhang 1092*0e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(bcastSF, MPIU_SCALAR, rootBuf.data(), leafBuf.data(), MPI_REPLACE)); 1093*0e3ece09SJunchao Zhang 1094*0e3ece09SJunchao Zhang // Update Fda and Foa with new data in leafBuf (as if it is Fa) 1095*0e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 1096*0e3ece09SJunchao Zhang Kokkos::TeamPolicy<>(workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 1097*0e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 1098*0e3ece09SJunchao Zhang PetscInt i = t.league_rank() * rowsPerTeam + k; // i-th row in F 1099*0e3ece09SJunchao Zhang if (i < Fm) { 1100*0e3ece09SJunchao Zhang PetscInt nzLeft = F_NzLeft(i); 1101*0e3ece09SJunchao Zhang PetscInt alen = Fdi(i + 1) - Fdi(i); 1102*0e3ece09SJunchao Zhang PetscInt blen = Foi(i + 1) - Foi(i); 1103*0e3ece09SJunchao Zhang PetscInt Fii = Fdi(i) + Foi(i); 1104*0e3ece09SJunchao Zhang 1105*0e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 1106*0e3ece09SJunchao Zhang PetscScalar val = leafBuf(Fii + j); 1107*0e3ece09SJunchao Zhang if (j < nzLeft) { // left 1108*0e3ece09SJunchao Zhang Foa(Foi(i) + j) = val; 1109*0e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { // diag 1110*0e3ece09SJunchao Zhang Fda(Fdi(i) + j - nzLeft) = val; 1111*0e3ece09SJunchao Zhang } else { // right 1112*0e3ece09SJunchao Zhang Foa(Foi(i) + j - alen) = val; 1113*0e3ece09SJunchao Zhang } 1114*0e3ece09SJunchao Zhang }); 1115*0e3ece09SJunchao Zhang } 1116*0e3ece09SJunchao Zhang }); 1117*0e3ece09SJunchao Zhang })); 1118*0e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 1119*0e3ece09SJunchao Zhang } 1120*0e3ece09SJunchao Zhang 1121*0e3ece09SJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AtB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AtB *mm) 1122*0e3ece09SJunchao Zhang { 1123*0e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 1124*0e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 1125*0e3ece09SJunchao Zhang KokkosCsrMatrix Adt, Aot, Ad, Ao, Bd, Bo; 1126*0e3ece09SJunchao Zhang PetscInt cstart, cend; 1127*0e3ece09SJunchao Zhang MPI_Comm comm; 1128*0e3ece09SJunchao Zhang 1129*0e3ece09SJunchao Zhang PetscFunctionBegin; 1130*0e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 1131*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->A, &Adt)); 1132*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->B, &Aot)); 1133*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 1134*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 1135*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 1136*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 1137*0e3ece09SJunchao Zhang 1138*0e3ece09SJunchao Zhang // TODO: add command line options to select spgemm algorithms 1139*0e3ece09SJunchao Zhang auto spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_DEFAULT; // default is TPL if enabled, otherwise KK 1140*0e3ece09SJunchao Zhang 1141*0e3ece09SJunchao Zhang // CUDA-10.2's spgemm has bugs. We prefer the SpGEMMreuse APIs introduced in cuda-11.4 1142*0e3ece09SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 1143*0e3ece09SJunchao Zhang #if PETSC_PKG_CUDA_VERSION_LT(11, 4, 0) 1144*0e3ece09SJunchao Zhang spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_KK; 1145f0e6e2d1SJunchao Zhang #endif 1146*0e3ece09SJunchao Zhang #endif 1147*0e3ece09SJunchao Zhang 1148*0e3ece09SJunchao Zhang PetscCallCXX(mm->kh1.create_spgemm_handle(spgemm_alg)); 1149*0e3ece09SJunchao Zhang PetscCallCXX(mm->kh2.create_spgemm_handle(spgemm_alg)); 1150*0e3ece09SJunchao Zhang PetscCallCXX(mm->kh3.create_spgemm_handle(spgemm_alg)); 1151*0e3ece09SJunchao Zhang PetscCallCXX(mm->kh4.create_spgemm_handle(spgemm_alg)); 1152*0e3ece09SJunchao Zhang 1153*0e3ece09SJunchao Zhang // Aot * (B's diag + B's off-diag) 1154*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh3, Aot, false, Bd, false, mm->C3)); 1155*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh4, Aot, false, Bo, false, mm->C4)); 1156*0e3ece09SJunchao Zhang // KK spgemm_symbolic() only populates the result's row map, but not its columns. 1157*0e3ece09SJunchao Zhang // TODO: Remove the fake spgemm_numeric() after KK fixed this problem. 1158*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Aot, false, Bd, false, mm->C3)); 1159*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Aot, false, Bo, false, mm->C4)); 1160*0e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 1161*0e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C3)); 1162*0e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C4)); 1163*0e3ece09SJunchao Zhang #endif 1164*0e3ece09SJunchao Zhang 1165*0e3ece09SJunchao Zhang // Reduce E (i.e., C3 and C4)'s rows to form F, and overlap the communication 1166*0e3ece09SJunchao Zhang PetscIntKokkosViewHost map_h("map_h", bmpi->B->cmap->n); 1167*0e3ece09SJunchao Zhang PetscCall(MatGetOwnershipRangeColumn(B, &cstart, &cend)); 1168*0e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceBegin(comm, mm->C3, mm->C4, cstart, cend, bmpi->garray, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1169*0e3ece09SJunchao Zhang 1170*0e3ece09SJunchao Zhang // Adt * (B's diag + B's off-diag) 1171*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh1, Adt, false, Bd, false, mm->C1)); 1172*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 1173*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Adt, false, Bd, false, mm->C1)); 1174*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 1175*0e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 1176*0e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C1)); 1177*0e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C2_mid)); 1178*0e3ece09SJunchao Zhang #endif 1179*0e3ece09SJunchao Zhang 1180*0e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceEnd(comm, mm->C3, mm->C4, cstart, cend, bmpi->garray, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1181*0e3ece09SJunchao Zhang 1182*0e3ece09SJunchao Zhang // Create C2, which shares a, i arrays with C2_mid, but with new column indices and potentially larger column size 1183*0e3ece09SJunchao Zhang MatColIdxKokkosView oldj = mm->C2_mid.graph.entries, newj("j", oldj.extent(0)); 1184*0e3ece09SJunchao Zhang PetscIntKokkosView map = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), map_h); 1185*0e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 1186*0e3ece09SJunchao Zhang oldj.extent(0), KOKKOS_LAMBDA(const PetscInt i) { newj(i) = map(oldj(i)); })); 1187*0e3ece09SJunchao Zhang PetscCallCXX(mm->C2 = KokkosCsrMatrix("C2", mm->C2_mid.numRows(), mm->n /*new column size*/, mm->C2_mid.nnz(), mm->C2_mid.values, mm->C2_mid.graph.row_map, newj)); 1188*0e3ece09SJunchao Zhang 1189*0e3ece09SJunchao Zhang // C = (C1+Fd, C2+Fo) 1190*0e3ece09SJunchao Zhang PetscCallCXX(mm->kh1.create_spadd_handle(true)); // C1, Fd are sorted 1191*0e3ece09SJunchao Zhang PetscCallCXX(mm->kh2.create_spadd_handle(true)); // C2, Fo are sorted 1192*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh1, mm->C1, mm->Fd, mm->Cd)); 1193*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh2, mm->C2, mm->Fo, mm->Co)); 1194*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->Fd, mm->Cd)); 1195*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->Fo, mm->Co)); 1196*0e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 1197*0e3ece09SJunchao Zhang } 1198*0e3ece09SJunchao Zhang 1199*0e3ece09SJunchao Zhang static PetscErrorCode MatProductNumeric_MPIAIJKokkos_AtB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AtB *mm) 1200*0e3ece09SJunchao Zhang { 1201*0e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 1202*0e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 1203*0e3ece09SJunchao Zhang KokkosCsrMatrix Adt, Aot, Bd, Bo; 1204*0e3ece09SJunchao Zhang MPI_Comm comm; 1205*0e3ece09SJunchao Zhang 1206*0e3ece09SJunchao Zhang PetscFunctionBegin; 1207*0e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 1208*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->A, &Adt)); 1209*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->B, &Aot)); 1210*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 1211*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 1212*0e3ece09SJunchao Zhang 1213*0e3ece09SJunchao Zhang // Aot * (B's diag + B's off-diag) 1214*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Aot, false, Bd, false, mm->C3)); 1215*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Aot, false, Bo, false, mm->C4)); 1216*0e3ece09SJunchao Zhang 1217*0e3ece09SJunchao Zhang // Reduce E (i.e., C3 and C4)'s rows to form F, and overlap the communication 1218*0e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceBegin(comm, mm->C3, mm->C4, 0, 0, NULL, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1219*0e3ece09SJunchao Zhang 1220*0e3ece09SJunchao Zhang // Adt * (B's diag + B's off-diag) 1221*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Adt, false, Bd, false, mm->C1)); 1222*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 1223*0e3ece09SJunchao Zhang 1224*0e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceEnd(comm, mm->C3, mm->C4, 0, 0, NULL, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1225*0e3ece09SJunchao Zhang 1226*0e3ece09SJunchao Zhang // C = (C1+Fd, C2+Fo) 1227*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->Fd, mm->Cd)); 1228*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->Fo, mm->Co)); 1229*0e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 1230*0e3ece09SJunchao Zhang } 1231f0e6e2d1SJunchao Zhang 1232076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AB - AB flavor of MatProductSymbolic_MPIAIJKokkos 1233076ba34aSJunchao Zhang 1234076ba34aSJunchao Zhang Input Parameters: 1235076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 1236076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 1237076ba34aSJunchao Zhang . B - an MPIAIJKOKKOS matrix 1238076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data when computing AB. Persist from symbolic to numeric operations. 1239076ba34aSJunchao Zhang */ 1240d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AB *mm) 1241d71ae5a4SJacob Faibussowitsch { 1242*0e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 1243*0e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 1244*0e3ece09SJunchao Zhang KokkosCsrMatrix Ad, Ao, Bd, Bo; 1245076ba34aSJunchao Zhang 1246076ba34aSJunchao Zhang PetscFunctionBegin; 1247*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 1248*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 1249*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 1250*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 1251*0e3ece09SJunchao Zhang 1252*0e3ece09SJunchao Zhang // TODO: add command line options to select spgemm algorithms 1253*0e3ece09SJunchao Zhang auto spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_DEFAULT; // default is TPL if enabled, otherwise KK 1254*0e3ece09SJunchao Zhang 1255*0e3ece09SJunchao Zhang // CUDA-10.2's spgemm has bugs. We prefer the SpGEMMreuse APIs introduced in cuda-11.4 1256*0e3ece09SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 1257*0e3ece09SJunchao Zhang #if PETSC_PKG_CUDA_VERSION_LT(11, 4, 0) 1258*0e3ece09SJunchao Zhang spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_KK; 1259*0e3ece09SJunchao Zhang #endif 1260f0e6e2d1SJunchao Zhang #endif 1261f0e6e2d1SJunchao Zhang 1262*0e3ece09SJunchao Zhang mm->kh1.create_spgemm_handle(spgemm_alg); 1263*0e3ece09SJunchao Zhang mm->kh2.create_spgemm_handle(spgemm_alg); 1264*0e3ece09SJunchao Zhang mm->kh3.create_spgemm_handle(spgemm_alg); 1265*0e3ece09SJunchao Zhang mm->kh4.create_spgemm_handle(spgemm_alg); 1266076ba34aSJunchao Zhang 1267*0e3ece09SJunchao Zhang // Bcast B's rows to form F, and overlap the communication 1268*0e3ece09SJunchao Zhang PetscIntKokkosViewHost map_h("map_h", bmpi->B->cmap->n); 1269*0e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastBegin(B, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1270076ba34aSJunchao Zhang 1271*0e3ece09SJunchao Zhang // A's diag * (B's diag + B's off-diag) 1272*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh1, Ad, false, Bd, false, mm->C1)); 1273*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); // C2 aliases with C2_mid, except with new column indices 1274*0e3ece09SJunchao Zhang // KK spgemm_symbolic() only populates the result's row map, but not its columns. 1275*0e3ece09SJunchao Zhang // TODO: Remove the fake spgemm_numeric() after KK fixed this problem. 1276*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Ad, false, Bd, false, mm->C1)); 1277*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); 1278*0e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 1279*0e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C1)); 1280*0e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C2_mid)); 1281*0e3ece09SJunchao Zhang #endif 1282076ba34aSJunchao Zhang 1283*0e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastEnd(B, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1284076ba34aSJunchao Zhang 1285*0e3ece09SJunchao Zhang // A's off-diag * (F's diag + F's off-diag) 1286*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 1287*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 1288*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 1289*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 1290*0e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 1291*0e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C3)); 1292*0e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C4)); 1293*0e3ece09SJunchao Zhang #endif 1294076ba34aSJunchao Zhang 1295*0e3ece09SJunchao Zhang // Create C2, which shares a, i arrays with C2_mid, but with new column indices and potentially larger column size 1296*0e3ece09SJunchao Zhang MatColIdxKokkosView oldj = mm->C2_mid.graph.entries, newj("j", oldj.extent(0)); 1297*0e3ece09SJunchao Zhang PetscIntKokkosView map = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), map_h); 1298*0e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 1299*0e3ece09SJunchao Zhang oldj.extent(0), KOKKOS_LAMBDA(const PetscInt i) { newj(i) = map(oldj(i)); })); 1300*0e3ece09SJunchao Zhang mm->C2 = KokkosCsrMatrix("C2", mm->C2_mid.numRows(), mm->n /*new column size*/, mm->C2_mid.nnz(), mm->C2_mid.values, mm->C2_mid.graph.row_map, newj); 1301*0e3ece09SJunchao Zhang 1302*0e3ece09SJunchao Zhang // C = (Cd, Co) = (C1+C3, C2+C4) 1303*0e3ece09SJunchao Zhang mm->kh1.create_spadd_handle(true); // C1, C3 are sorted 1304*0e3ece09SJunchao Zhang mm->kh2.create_spadd_handle(true); // C2, C4 are sorted 1305*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh1, mm->C1, mm->C3, mm->Cd)); 1306*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh2, mm->C2, mm->C4, mm->Co)); 1307*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->C3, mm->Cd)); 1308*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->C4, mm->Co)); 13093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1310076ba34aSJunchao Zhang } 1311076ba34aSJunchao Zhang 1312*0e3ece09SJunchao Zhang static PetscErrorCode MatProductNumeric_MPIAIJKokkos_AB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AB *mm) 1313d71ae5a4SJacob Faibussowitsch { 1314*0e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 1315*0e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 1316*0e3ece09SJunchao Zhang KokkosCsrMatrix Ad, Ao, Bd, Bo; 1317076ba34aSJunchao Zhang 1318076ba34aSJunchao Zhang PetscFunctionBegin; 1319*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 1320*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 1321*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 1322*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 1323076ba34aSJunchao Zhang 1324*0e3ece09SJunchao Zhang // Bcast B's rows to form F, and overlap the communication 1325*0e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastBegin(B, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1326076ba34aSJunchao Zhang 1327*0e3ece09SJunchao Zhang // A's diag * (B's diag + B's off-diag) 1328*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Ad, false, Bd, false, mm->C1)); 1329*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); 1330076ba34aSJunchao Zhang 1331*0e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastEnd(B, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1332076ba34aSJunchao Zhang 1333*0e3ece09SJunchao Zhang // A's off-diag * (F's diag + F's off-diag) 1334*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 1335*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 1336*0e3ece09SJunchao Zhang 1337*0e3ece09SJunchao Zhang // C = (Cd, Co) = (C1+C3, C2+C4) 1338*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->C3, mm->Cd)); 1339*0e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->C4, mm->Co)); 13403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1341076ba34aSJunchao Zhang } 1342076ba34aSJunchao Zhang 1343d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductNumeric_MPIAIJKokkos(Mat C) 1344d71ae5a4SJacob Faibussowitsch { 1345*0e3ece09SJunchao Zhang Mat_MPIAIJ *cmpi = static_cast<Mat_MPIAIJ *>(C->data); 1346*0e3ece09SJunchao Zhang Mat_Product *product; 1347*0e3ece09SJunchao Zhang MatProductData_MPIAIJKokkos *pdata; 1348076ba34aSJunchao Zhang MatProductType ptype; 1349*0e3ece09SJunchao Zhang Mat A, B; 1350076ba34aSJunchao Zhang 1351076ba34aSJunchao Zhang PetscFunctionBegin; 1352*0e3ece09SJunchao Zhang MatCheckProduct(C, 1); // make sure C is a product 1353*0e3ece09SJunchao Zhang product = C->product; 1354*0e3ece09SJunchao Zhang pdata = static_cast<MatProductData_MPIAIJKokkos *>(product->data); 1355076ba34aSJunchao Zhang ptype = product->type; 1356076ba34aSJunchao Zhang A = product->A; 1357076ba34aSJunchao Zhang B = product->B; 1358076ba34aSJunchao Zhang 1359*0e3ece09SJunchao Zhang // See if numeric has already been done in symbolic (e.g., user calls MatMatMult(A,B,MAT_INITIAL_MATRIX,..,C)). 1360*0e3ece09SJunchao Zhang // If yes, skip the numeric, but reset the flag so that next time when user calls MatMatMult(E,F,MAT_REUSE_MATRIX,..,C), 1361*0e3ece09SJunchao Zhang // we still do numeric. 1362*0e3ece09SJunchao Zhang if (pdata->reusesym) { // numeric reuses results from symbolic 1363*0e3ece09SJunchao Zhang pdata->reusesym = PETSC_FALSE; 13643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1365076ba34aSJunchao Zhang } 1366076ba34aSJunchao Zhang 1367076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 1368*0e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AB(product, A, B, pdata->mmAB)); 1369076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 1370*0e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AtB(product, A, B, pdata->mmAtB)); 1371*0e3ece09SJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { // BtAB, computed by Z = AB; C= BtZ 1372*0e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AB(product, A, B, pdata->mmAB)); 1373*0e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AtB(product, B, pdata->Z, pdata->mmAtB)); 1374076ba34aSJunchao Zhang } 1375*0e3ece09SJunchao Zhang 1376*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(cmpi->A)); // mark that A, B on device are modified 1377*0e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(cmpi->B)); 13783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1379076ba34aSJunchao Zhang } 1380076ba34aSJunchao Zhang 1381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJKokkos(Mat C) 1382d71ae5a4SJacob Faibussowitsch { 1383076ba34aSJunchao Zhang Mat A, B; 1384*0e3ece09SJunchao Zhang Mat_Product *product; 1385076ba34aSJunchao Zhang MatProductType ptype; 1386*0e3ece09SJunchao Zhang MatProductData_MPIAIJKokkos *pdata; 1387076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 1388*0e3ece09SJunchao Zhang PetscInt m, n, M, N; 1389*0e3ece09SJunchao Zhang Mat Cd, Co; 1390*0e3ece09SJunchao Zhang MPI_Comm comm; 1391076ba34aSJunchao Zhang 1392076ba34aSJunchao Zhang PetscFunctionBegin; 1393*0e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 1394076ba34aSJunchao Zhang MatCheckProduct(C, 1); 1395*0e3ece09SJunchao Zhang product = C->product; 1396*0e3ece09SJunchao Zhang PetscCheck(!product->data, comm, PETSC_ERR_PLIB, "Product data not empty"); 1397076ba34aSJunchao Zhang ptype = product->type; 1398076ba34aSJunchao Zhang A = product->A; 1399076ba34aSJunchao Zhang B = product->B; 1400076ba34aSJunchao Zhang 1401076ba34aSJunchao Zhang switch (ptype) { 14029371c9d4SSatish Balay case MATPRODUCT_AB: 14039371c9d4SSatish Balay m = A->rmap->n; 14049371c9d4SSatish Balay n = B->cmap->n; 14059371c9d4SSatish Balay M = A->rmap->N; 14069371c9d4SSatish Balay N = B->cmap->N; 14079371c9d4SSatish Balay break; 14089371c9d4SSatish Balay case MATPRODUCT_AtB: 14099371c9d4SSatish Balay m = A->cmap->n; 14109371c9d4SSatish Balay n = B->cmap->n; 14119371c9d4SSatish Balay M = A->cmap->N; 14129371c9d4SSatish Balay N = B->cmap->N; 14139371c9d4SSatish Balay break; 14149371c9d4SSatish Balay case MATPRODUCT_PtAP: 14159371c9d4SSatish Balay m = B->cmap->n; 14169371c9d4SSatish Balay n = B->cmap->n; 14179371c9d4SSatish Balay M = B->cmap->N; 14189371c9d4SSatish Balay N = B->cmap->N; 14199371c9d4SSatish Balay break; /* BtAB */ 1420d71ae5a4SJacob Faibussowitsch default: 1421*0e3ece09SJunchao Zhang SETERRQ(comm, PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 1422076ba34aSJunchao Zhang } 1423076ba34aSJunchao Zhang 14249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 14259566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 14269566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 14279566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 1428076ba34aSJunchao Zhang 1429*0e3ece09SJunchao Zhang pdata = new MatProductData_MPIAIJKokkos(); 1430*0e3ece09SJunchao Zhang pdata->reusesym = product->api_user; 1431076ba34aSJunchao Zhang 1432076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 1433*0e3ece09SJunchao Zhang auto mmAB = new MatMatStruct_AB(); 1434*0e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AB(product, A, B, mmAB)); 1435*0e3ece09SJunchao Zhang mm = pdata->mmAB = mmAB; 1436076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 1437*0e3ece09SJunchao Zhang auto mmAtB = new MatMatStruct_AtB(); 1438*0e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AtB(product, A, B, mmAtB)); 1439*0e3ece09SJunchao Zhang mm = pdata->mmAtB = mmAtB; 1440*0e3ece09SJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { // C = BtAB, computed as Z = AB; C= BtZ 1441*0e3ece09SJunchao Zhang Mat Zd, Zo, Z; // Zd, Zo are owned by pdata->Z 1442*0e3ece09SJunchao Zhang 1443*0e3ece09SJunchao Zhang auto mmAB = new MatMatStruct_AB(); 1444*0e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AB(product, A, B, mmAB)); // Z stored as mmAB->{Cd, Co} 1445*0e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mmAB->Cd, &Zd)); 1446*0e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mmAB->Co, &Zo)); 1447*0e3ece09SJunchao Zhang pdata->mmAB = mmAB; 1448*0e3ece09SJunchao Zhang 1449*0e3ece09SJunchao Zhang m = A->rmap->n; // Z's layout 1450*0e3ece09SJunchao Zhang n = B->cmap->n; 1451*0e3ece09SJunchao Zhang M = A->rmap->N; 1452*0e3ece09SJunchao Zhang N = B->cmap->N; 1453*0e3ece09SJunchao Zhang PetscCall(MatCreate(comm, &Z)); 1454*0e3ece09SJunchao Zhang PetscCall(MatSetSizes(Z, m, n, M, N)); 1455*0e3ece09SJunchao Zhang PetscCall(PetscLayoutSetUp(Z->rmap)); 1456*0e3ece09SJunchao Zhang PetscCall(PetscLayoutSetUp(Z->cmap)); 1457*0e3ece09SJunchao Zhang PetscCall(MatSetType(Z, MATMPIAIJKOKKOS)); 1458*0e3ece09SJunchao Zhang PetscCall(MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Z, Zd, Zo, mmAB->garray)); 1459*0e3ece09SJunchao Zhang 1460*0e3ece09SJunchao Zhang auto mmAtB = new MatMatStruct_AtB(); 1461*0e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AtB(product, B, Z, mmAtB)); // final result C stored as mmAtB->{Cd, Co} 1462*0e3ece09SJunchao Zhang 1463*0e3ece09SJunchao Zhang pdata->Z = Z; // give ownership to pdata 1464*0e3ece09SJunchao Zhang mm = pdata->mmAtB = mmAtB; 1465076ba34aSJunchao Zhang } 1466*0e3ece09SJunchao Zhang 1467*0e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mm->Cd, &Cd)); 1468*0e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mm->Co, &Co)); 1469*0e3ece09SJunchao Zhang PetscCall(MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(C, Cd, Co, mm->garray)); 1470*0e3ece09SJunchao Zhang 1471*0e3ece09SJunchao Zhang C->product->data = pdata; 1472076ba34aSJunchao Zhang C->product->destroy = MatProductDataDestroy_MPIAIJKokkos; 1473076ba34aSJunchao Zhang C->ops->productnumeric = MatProductNumeric_MPIAIJKokkos; 14743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1475076ba34aSJunchao Zhang } 1476076ba34aSJunchao Zhang 1477d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJKokkos(Mat mat) 1478d71ae5a4SJacob Faibussowitsch { 1479076ba34aSJunchao Zhang Mat_Product *product = mat->product; 1480076ba34aSJunchao Zhang PetscBool match = PETSC_FALSE; 1481076ba34aSJunchao Zhang PetscBool usecpu = PETSC_FALSE; 1482076ba34aSJunchao Zhang 1483076ba34aSJunchao Zhang PetscFunctionBegin; 1484076ba34aSJunchao Zhang MatCheckProduct(mat, 1); 148548a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 1486076ba34aSJunchao Zhang if (match) { /* we can always fallback to the CPU if requested */ 1487076ba34aSJunchao Zhang switch (product->type) { 1488076ba34aSJunchao Zhang case MATPRODUCT_AB: 1489076ba34aSJunchao Zhang if (product->api_user) { 1490d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 14919566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 1492d0609cedSBarry Smith PetscOptionsEnd(); 1493076ba34aSJunchao Zhang } else { 1494d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 14959566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 1496d0609cedSBarry Smith PetscOptionsEnd(); 1497076ba34aSJunchao Zhang } 1498076ba34aSJunchao Zhang break; 1499076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1500076ba34aSJunchao Zhang if (product->api_user) { 1501d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 15029566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 1503d0609cedSBarry Smith PetscOptionsEnd(); 1504076ba34aSJunchao Zhang } else { 1505d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 15069566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 1507d0609cedSBarry Smith PetscOptionsEnd(); 1508076ba34aSJunchao Zhang } 1509076ba34aSJunchao Zhang break; 1510076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1511076ba34aSJunchao Zhang if (product->api_user) { 1512d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 15139566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 1514d0609cedSBarry Smith PetscOptionsEnd(); 1515076ba34aSJunchao Zhang } else { 1516d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 15179566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 1518d0609cedSBarry Smith PetscOptionsEnd(); 1519076ba34aSJunchao Zhang } 1520076ba34aSJunchao Zhang break; 1521d71ae5a4SJacob Faibussowitsch default: 1522d71ae5a4SJacob Faibussowitsch break; 1523076ba34aSJunchao Zhang } 1524076ba34aSJunchao Zhang match = (PetscBool)!usecpu; 1525076ba34aSJunchao Zhang } 1526076ba34aSJunchao Zhang if (match) { 1527076ba34aSJunchao Zhang switch (product->type) { 1528076ba34aSJunchao Zhang case MATPRODUCT_AB: 1529076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1530d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 1531d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJKokkos; 1532d71ae5a4SJacob Faibussowitsch break; 1533d71ae5a4SJacob Faibussowitsch default: 1534d71ae5a4SJacob Faibussowitsch break; 1535076ba34aSJunchao Zhang } 1536076ba34aSJunchao Zhang } 1537076ba34aSJunchao Zhang /* fallback to MPIAIJ ops */ 153848a46eb9SPierre Jolivet if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 15393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1540076ba34aSJunchao Zhang } 1541076ba34aSJunchao Zhang 1542d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetPreallocationCOO_MPIAIJKokkos(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 1543d71ae5a4SJacob Faibussowitsch { 1544394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 1545cbc6b225SStefano Zampini Mat_MPIAIJKokkos *mpikok; 154642550becSJunchao Zhang 154742550becSJunchao Zhang PetscFunctionBegin; 154830203840SJunchao Zhang PetscCall(MatSetPreallocationCOO_MPIAIJ(mat, coo_n, coo_i, coo_j)); /* mpiaij->A,B's type is set to seqaijkokkos */ 1549cbc6b225SStefano Zampini mat->preallocated = PETSC_TRUE; 15509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 15519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 15529566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat)); 1553cbc6b225SStefano Zampini mpikok = static_cast<Mat_MPIAIJKokkos *>(mpiaij->spptr); 1554cbc6b225SStefano Zampini delete mpikok; 1555394ed5ebSJunchao Zhang mpiaij->spptr = new Mat_MPIAIJKokkos(mpiaij); 15563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 155742550becSJunchao Zhang } 155842550becSJunchao Zhang 1559d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJKokkos(Mat mat, const PetscScalar v[], InsertMode imode) 1560d71ae5a4SJacob Faibussowitsch { 1561394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 156242550becSJunchao Zhang Mat_MPIAIJKokkos *mpikok = static_cast<Mat_MPIAIJKokkos *>(mpiaij->spptr); 156342550becSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 1564158ec288SJunchao Zhang PetscCount Annz = mpiaij->Annz, Annz2 = mpiaij->Annz2, Bnnz = mpiaij->Bnnz, Bnnz2 = mpiaij->Bnnz2; 156542550becSJunchao Zhang MatScalarKokkosView Aa, Ba; 1566394ed5ebSJunchao Zhang MatScalarKokkosView v1; 156742550becSJunchao Zhang MatScalarKokkosView &vsend = mpikok->sendbuf_d; 156842550becSJunchao Zhang const MatScalarKokkosView &v2 = mpikok->recvbuf_d; 1569158ec288SJunchao Zhang const PetscCountKokkosView &Ajmap1 = mpikok->Ajmap1_d, Ajmap2 = mpikok->Ajmap2_d, Aimap2 = mpikok->Aimap2_d; 1570158ec288SJunchao Zhang const PetscCountKokkosView &Bjmap1 = mpikok->Bjmap1_d, Bjmap2 = mpikok->Bjmap2_d, Bimap2 = mpikok->Bimap2_d; 1571394ed5ebSJunchao Zhang const PetscCountKokkosView &Aperm1 = mpikok->Aperm1_d, Aperm2 = mpikok->Aperm2_d, Bperm1 = mpikok->Bperm1_d, Bperm2 = mpikok->Bperm2_d; 1572394ed5ebSJunchao Zhang const PetscCountKokkosView &Cperm1 = mpikok->Cperm1_d; 157342550becSJunchao Zhang PetscMemType memtype; 157442550becSJunchao Zhang 157542550becSJunchao Zhang PetscFunctionBegin; 15769566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(v, &memtype)); /* Return PETSC_MEMTYPE_HOST when v is NULL */ 157742550becSJunchao Zhang if (PetscMemTypeHost(memtype)) { /* If user gave v[] in host, we need to copy it to device if any */ 1578394ed5ebSJunchao Zhang v1 = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), MatScalarKokkosViewHost((PetscScalar *)v, mpiaij->coo_n)); 157942550becSJunchao Zhang } else { 1580394ed5ebSJunchao Zhang v1 = MatScalarKokkosView((PetscScalar *)v, mpiaij->coo_n); /* Directly use v[]'s memory */ 158142550becSJunchao Zhang } 158242550becSJunchao Zhang 158342550becSJunchao Zhang if (imode == INSERT_VALUES) { 15849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosViewWrite(A, &Aa)); /* write matrix values */ 15859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosViewWrite(B, &Ba)); 1586394ed5ebSJunchao Zhang } else { 15879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosView(A, &Aa)); /* read & write matrix values */ 15889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosView(B, &Ba)); 158942550becSJunchao Zhang } 159042550becSJunchao Zhang 159142550becSJunchao Zhang /* Pack entries to be sent to remote */ 15929371c9d4SSatish Balay Kokkos::parallel_for( 15939371c9d4SSatish Balay vsend.extent(0), KOKKOS_LAMBDA(const PetscCount i) { vsend(i) = v1(Cperm1(i)); }); 159442550becSJunchao Zhang 159542550becSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 15969566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(mpiaij->coo_sf, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, vsend.data(), PETSC_MEMTYPE_KOKKOS, v2.data(), MPI_REPLACE)); 1597158ec288SJunchao Zhang /* Add local entries to A and B in one kernel */ 15989371c9d4SSatish Balay Kokkos::parallel_for( 15999371c9d4SSatish Balay Annz + Bnnz, KOKKOS_LAMBDA(PetscCount i) { 1600158ec288SJunchao Zhang PetscScalar sum = 0.0; 1601158ec288SJunchao Zhang if (i < Annz) { 1602158ec288SJunchao Zhang for (PetscCount k = Ajmap1(i); k < Ajmap1(i + 1); k++) sum += v1(Aperm1(k)); 1603ac38520cSJunchao Zhang Aa(i) = (imode == INSERT_VALUES ? 0.0 : Aa(i)) + sum; 1604158ec288SJunchao Zhang } else { 1605158ec288SJunchao Zhang i -= Annz; 1606158ec288SJunchao Zhang for (PetscCount k = Bjmap1(i); k < Bjmap1(i + 1); k++) sum += v1(Bperm1(k)); 1607ac38520cSJunchao Zhang Ba(i) = (imode == INSERT_VALUES ? 0.0 : Ba(i)) + sum; 1608158ec288SJunchao Zhang } 1609158ec288SJunchao Zhang }); 16109566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(mpiaij->coo_sf, MPIU_SCALAR, vsend.data(), v2.data(), MPI_REPLACE)); 161142550becSJunchao Zhang 1612158ec288SJunchao Zhang /* Add received remote entries to A and B in one kernel */ 16139371c9d4SSatish Balay Kokkos::parallel_for( 16149371c9d4SSatish Balay Annz2 + Bnnz2, KOKKOS_LAMBDA(PetscCount i) { 1615158ec288SJunchao Zhang if (i < Annz2) { 1616158ec288SJunchao Zhang for (PetscCount k = Ajmap2(i); k < Ajmap2(i + 1); k++) Aa(Aimap2(i)) += v2(Aperm2(k)); 1617158ec288SJunchao Zhang } else { 1618158ec288SJunchao Zhang i -= Annz2; 1619158ec288SJunchao Zhang for (PetscCount k = Bjmap2(i); k < Bjmap2(i + 1); k++) Ba(Bimap2(i)) += v2(Bperm2(k)); 1620158ec288SJunchao Zhang } 1621158ec288SJunchao Zhang }); 162242550becSJunchao Zhang 1623394ed5ebSJunchao Zhang if (imode == INSERT_VALUES) { 16249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosViewWrite(A, &Aa)); /* Increase A & B's state etc. */ 16259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosViewWrite(B, &Ba)); 1626394ed5ebSJunchao Zhang } else { 16279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosView(A, &Aa)); 16289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosView(B, &Ba)); 1629394ed5ebSJunchao Zhang } 16303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 163142550becSJunchao Zhang } 163242550becSJunchao Zhang 1633d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPIAIJKokkos(Mat A) 1634d71ae5a4SJacob Faibussowitsch { 163542550becSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)A->data; 1636076ba34aSJunchao Zhang 1637076ba34aSJunchao Zhang PetscFunctionBegin; 16389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatMPIAIJSetPreallocation_C", NULL)); 16399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", NULL)); 16409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetPreallocationCOO_C", NULL)); 16419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetValuesCOO_C", NULL)); 164242550becSJunchao Zhang delete (Mat_MPIAIJKokkos *)mpiaij->spptr; 16439566063dSJacob Faibussowitsch PetscCall(MatDestroy_MPIAIJ(A)); 16443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1645076ba34aSJunchao Zhang } 1646076ba34aSJunchao Zhang 1647d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat A, MatType mtype, MatReuse reuse, Mat *newmat) 1648d71ae5a4SJacob Faibussowitsch { 16498c3ff71bSJunchao Zhang Mat B; 1650076ba34aSJunchao Zhang Mat_MPIAIJ *a; 16518c3ff71bSJunchao Zhang 16528c3ff71bSJunchao Zhang PetscFunctionBegin; 16538c3ff71bSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 16549566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, newmat)); 16558c3ff71bSJunchao Zhang } else if (reuse == MAT_REUSE_MATRIX) { 16569566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *newmat, SAME_NONZERO_PATTERN)); 16578c3ff71bSJunchao Zhang } 16588c3ff71bSJunchao Zhang B = *newmat; 16598c3ff71bSJunchao Zhang 16606f3d89d0SStefano Zampini B->boundtocpu = PETSC_FALSE; 16619566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16629566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECKOKKOS, &B->defaultvectype)); 16639566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJKOKKOS)); 16648c3ff71bSJunchao Zhang 1665076ba34aSJunchao Zhang a = static_cast<Mat_MPIAIJ *>(A->data); 16669566063dSJacob Faibussowitsch if (a->A) PetscCall(MatSetType(a->A, MATSEQAIJKOKKOS)); 16679566063dSJacob Faibussowitsch if (a->B) PetscCall(MatSetType(a->B, MATSEQAIJKOKKOS)); 16689566063dSJacob Faibussowitsch if (a->lvec) PetscCall(VecSetType(a->lvec, VECSEQKOKKOS)); 1669076ba34aSJunchao Zhang 16708c3ff71bSJunchao Zhang B->ops->assemblyend = MatAssemblyEnd_MPIAIJKokkos; 16718c3ff71bSJunchao Zhang B->ops->mult = MatMult_MPIAIJKokkos; 16728c3ff71bSJunchao Zhang B->ops->multadd = MatMultAdd_MPIAIJKokkos; 16738c3ff71bSJunchao Zhang B->ops->multtranspose = MatMultTranspose_MPIAIJKokkos; 1674076ba34aSJunchao Zhang B->ops->productsetfromoptions = MatProductSetFromOptions_MPIAIJKokkos; 1675076ba34aSJunchao Zhang B->ops->destroy = MatDestroy_MPIAIJKokkos; 16768c3ff71bSJunchao Zhang 16779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJKokkos)); 16789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJGetLocalMatMerge_C", MatMPIAIJGetLocalMatMerge_MPIAIJKokkos)); 16799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJKokkos)); 16809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJKokkos)); 16813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16828c3ff71bSJunchao Zhang } 16833f3ba80aSJunchao Zhang /*MC 168411a5261eSBarry Smith MATAIJKOKKOS - "mpiaijkokkos", a matrix type to be used for CSR sparse matrices with Kokkos 16858c3ff71bSJunchao Zhang 16863f3ba80aSJunchao Zhang A matrix type type using Kokkos-Kernels CrsMatrix type for portability across different device types 16873f3ba80aSJunchao Zhang 16882ef1f0ffSBarry Smith Options Database Key: 16892ef1f0ffSBarry Smith . -mat_type aijkokkos - sets the matrix type to `MATAIJKOKKOS` 16903f3ba80aSJunchao Zhang 16913f3ba80aSJunchao Zhang Level: beginner 16923f3ba80aSJunchao Zhang 16932ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateAIJKokkos()`, `MATSEQAIJKOKKOS`, `MATSEQAIJ`, `MATMPIAIJ` 16943f3ba80aSJunchao Zhang M*/ 1695d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJKokkos(Mat A) 1696d71ae5a4SJacob Faibussowitsch { 16978c3ff71bSJunchao Zhang PetscFunctionBegin; 16989566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 16999566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIAIJ(A)); 17009566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIAIJ_MPIAIJKokkos(A, MATMPIAIJKOKKOS, MAT_INPLACE_MATRIX, &A)); 17013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17028c3ff71bSJunchao Zhang } 17038c3ff71bSJunchao Zhang 17048c3ff71bSJunchao Zhang /*@C 170511a5261eSBarry Smith MatCreateAIJKokkos - Creates a sparse matrix in `MATAIJKOKOS` (compressed row) format 17068c3ff71bSJunchao Zhang (the default parallel PETSc format). This matrix will ultimately pushed down 17078c3ff71bSJunchao Zhang to Kokkos for calculations. For good matrix 17088c3ff71bSJunchao Zhang assembly performance the user should preallocate the matrix storage by setting 17092ef1f0ffSBarry Smith the parameter `nz` (or the array `nnz`). 17108c3ff71bSJunchao Zhang 17118c3ff71bSJunchao Zhang Collective 17128c3ff71bSJunchao Zhang 17138c3ff71bSJunchao Zhang Input Parameters: 171411a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF` 17158c3ff71bSJunchao Zhang . m - number of rows 17168c3ff71bSJunchao Zhang . n - number of columns 17178c3ff71bSJunchao Zhang . nz - number of nonzeros per row (same for all rows) 17188c3ff71bSJunchao Zhang - nnz - array containing the number of nonzeros in the various rows 17192ef1f0ffSBarry Smith (possibly different for each row) or `NULL` 17208c3ff71bSJunchao Zhang 17218c3ff71bSJunchao Zhang Output Parameter: 17228c3ff71bSJunchao Zhang . A - the matrix 17238c3ff71bSJunchao Zhang 17242ef1f0ffSBarry Smith Level: intermediate 17252ef1f0ffSBarry Smith 17262ef1f0ffSBarry Smith Notes: 172711a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 17288c3ff71bSJunchao Zhang MatXXXXSetPreallocation() paradigm instead of this routine directly. 172911a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 17308c3ff71bSJunchao Zhang 17312ef1f0ffSBarry Smith If `nnz` is given then `nz` is ignored 17328c3ff71bSJunchao Zhang 1733667f096bSBarry Smith The AIJ format, also called compressed row storage), is fully compatible with standard Fortran 17348c3ff71bSJunchao Zhang storage. That is, the stored row and column indices can begin at 17352ef1f0ffSBarry Smith either one (as in Fortran) or zero. 17368c3ff71bSJunchao Zhang 17378c3ff71bSJunchao Zhang Specify the preallocated storage with either nz or nnz (not both). 17382ef1f0ffSBarry Smith Set `nz` = `PETSC_DEFAULT` and `nnz` = `NULL` for PETSc to control dynamic memory 17398c3ff71bSJunchao Zhang allocation. For large problems you MUST preallocate memory or you 17408c3ff71bSJunchao Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 17418c3ff71bSJunchao Zhang 17428c3ff71bSJunchao Zhang By default, this format uses inodes (identical nodes) when possible, to 17438c3ff71bSJunchao Zhang improve numerical efficiency of matrix-vector products and solves. We 17448c3ff71bSJunchao Zhang search for consecutive rows with the same nonzero structure, thereby 17458c3ff71bSJunchao Zhang reusing matrix information to achieve increased efficiency. 17468c3ff71bSJunchao Zhang 17472ef1f0ffSBarry Smith Developer Note: 17482ef1f0ffSBarry Smith This manual page is for the sequential constructor, not the parallel constructor 17498c3ff71bSJunchao Zhang 17502ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATAIJKOKOS`, `MATSEQAIJKOKOS`, `MATMPIAIJKOKOS`, `MatCreate()`, `MatCreateAIJ()`, `MatSetValues()`, 17512ef1f0ffSBarry Smith `MatSeqAIJSetColumnIndices()`, `MatCreateSeqAIJWithArrays()`, `MatCreateAIJ()`, `MATMPIAIJKOKKOS`, `MATAIJKOKKOS` 17528c3ff71bSJunchao Zhang @*/ 1753d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJKokkos(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 1754d71ae5a4SJacob Faibussowitsch { 17558c3ff71bSJunchao Zhang PetscMPIInt size; 17568c3ff71bSJunchao Zhang 17578c3ff71bSJunchao Zhang PetscFunctionBegin; 17589566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 17599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 17609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17618c3ff71bSJunchao Zhang if (size > 1) { 17629566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJKOKKOS)); 17639566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 17648c3ff71bSJunchao Zhang } else { 17659566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJKOKKOS)); 17669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 17678c3ff71bSJunchao Zhang } 17683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17698c3ff71bSJunchao Zhang } 17708c3ff71bSJunchao Zhang 1771a587d139SMark // get GPU pointer to stripped down Mat. For both Seq and MPI Mat. 1772d71ae5a4SJacob Faibussowitsch PetscErrorCode MatKokkosGetDeviceMatWrite(Mat A, PetscSplitCSRDataStructure *B) 1773d71ae5a4SJacob Faibussowitsch { 1774a587d139SMark PetscMPIInt size, rank; 1775a587d139SMark MPI_Comm comm; 1776042217e8SBarry Smith PetscSplitCSRDataStructure d_mat = NULL; 1777a587d139SMark 1778a587d139SMark PetscFunctionBegin; 17799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 17809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1782a587d139SMark if (size == 1) { 17839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGetDeviceMat(A, &d_mat)); 17849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosModifyDevice(A)); /* Since we are going to modify matrix values on device */ 1785a587d139SMark } else { 1786a587d139SMark Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 17879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGetDeviceMat(aij->A, &d_mat)); 17889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosModifyDevice(aij->A)); 17899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosModifyDevice(aij->B)); 17902c71b3e2SJacob Faibussowitsch PetscCheck(A->nooffprocentries || aij->donotstash, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Device assembly does not currently support offproc values insertion. Use MatSetOption(A,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) or MatSetOption(A,MAT_IGNORE_OFF_PROC_ENTRIES,PETSC_TRUE)"); 1791a587d139SMark } 1792a587d139SMark // act like MatSetValues because not called on host 1793a587d139SMark if (A->assembled) { 179448a46eb9SPierre Jolivet if (A->was_assembled) PetscCall(PetscInfo(A, "Assemble more than once already\n")); 1795a587d139SMark A->was_assembled = PETSC_TRUE; // this is done (lazy) in MatAssemble but we are not calling it anymore - done in AIJ AssemblyEnd, need here? 1796a587d139SMark } else { 17979566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Warning !assemble ??? assembled=%" PetscInt_FMT "\n", A->assembled)); 1798a587d139SMark } 1799a587d139SMark if (!d_mat) { 1800042217e8SBarry Smith struct _n_SplitCSRMat h_mat; /* host container */ 1801a587d139SMark Mat_SeqAIJKokkos *aijkokA; 1802a587d139SMark Mat_SeqAIJ *jaca; 1803a587d139SMark PetscInt n = A->rmap->n, nnz; 1804a587d139SMark Mat Amat; 1805042217e8SBarry Smith PetscInt *colmap; 1806042217e8SBarry Smith 1807042217e8SBarry Smith /* create and copy h_mat */ 180849b994a9SMark Adams h_mat.M = A->cmap->N; // use for debug build 18099566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Create device matrix in Kokkos\n")); 1810a587d139SMark if (size == 1) { 1811a587d139SMark Amat = A; 1812a587d139SMark jaca = (Mat_SeqAIJ *)A->data; 18139371c9d4SSatish Balay h_mat.rstart = 0; 18149371c9d4SSatish Balay h_mat.rend = A->rmap->n; 18159371c9d4SSatish Balay h_mat.cstart = 0; 18169371c9d4SSatish Balay h_mat.cend = A->cmap->n; 1817a587d139SMark h_mat.offdiag.i = h_mat.offdiag.j = NULL; 1818a587d139SMark h_mat.offdiag.a = NULL; 1819a587d139SMark aijkokA = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 1820a587d139SMark } else { 1821a587d139SMark Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 1822a587d139SMark Mat_SeqAIJ *jacb = (Mat_SeqAIJ *)aij->B->data; 1823a587d139SMark PetscInt ii; 1824a587d139SMark Mat_SeqAIJKokkos *aijkokB; 1825042217e8SBarry Smith 1826a587d139SMark Amat = aij->A; 1827a587d139SMark aijkokA = static_cast<Mat_SeqAIJKokkos *>(aij->A->spptr); 1828a587d139SMark aijkokB = static_cast<Mat_SeqAIJKokkos *>(aij->B->spptr); 1829a587d139SMark jaca = (Mat_SeqAIJ *)aij->A->data; 183008401ef6SPierre Jolivet PetscCheck(!aij->B->cmap->n || aij->garray, comm, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 183108401ef6SPierre Jolivet PetscCheck(aij->B->rmap->n == aij->A->rmap->n, comm, PETSC_ERR_SUP, "Only support aij->B->rmap->n == aij->A->rmap->n"); 1832a587d139SMark aij->donotstash = PETSC_TRUE; 1833a587d139SMark aij->A->nooffprocentries = aij->B->nooffprocentries = A->nooffprocentries = PETSC_TRUE; 1834a5b23f4aSJose E. Roman jaca->nonew = jacb->nonew = PETSC_TRUE; // no more disassembly 18359566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(A->cmap->N, &colmap)); 1836042217e8SBarry Smith for (ii = 0; ii < aij->B->cmap->n; ii++) colmap[aij->garray[ii]] = ii + 1; 1837a587d139SMark // allocate B copy data 18389371c9d4SSatish Balay h_mat.rstart = A->rmap->rstart; 18399371c9d4SSatish Balay h_mat.rend = A->rmap->rend; 18409371c9d4SSatish Balay h_mat.cstart = A->cmap->rstart; 18419371c9d4SSatish Balay h_mat.cend = A->cmap->rend; 1842a587d139SMark nnz = jacb->i[n]; 1843a587d139SMark if (jacb->compressedrow.use) { 1844a587d139SMark const Kokkos::View<PetscInt *, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_i_k(jacb->i, n + 1); 1845300d22a6SJunchao Zhang aijkokB->i_uncompressed_d = Kokkos::View<PetscInt *>(Kokkos::create_mirror(DefaultMemorySpace(), h_i_k)); 1846300d22a6SJunchao Zhang Kokkos::deep_copy(aijkokB->i_uncompressed_d, h_i_k); 1847300d22a6SJunchao Zhang h_mat.offdiag.i = aijkokB->i_uncompressed_d.data(); 1848a587d139SMark } else { 184999551766SMark Adams h_mat.offdiag.i = aijkokB->i_device_data(); 1850a587d139SMark } 185199551766SMark Adams h_mat.offdiag.j = aijkokB->j_device_data(); 1852076ba34aSJunchao Zhang h_mat.offdiag.a = aijkokB->a_device_data(); 1853a587d139SMark { 1854042217e8SBarry Smith Kokkos::View<PetscInt *, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_colmap_k(colmap, A->cmap->N); 1855300d22a6SJunchao Zhang aijkokB->colmap_d = Kokkos::View<PetscInt *>(Kokkos::create_mirror(DefaultMemorySpace(), h_colmap_k)); 1856300d22a6SJunchao Zhang Kokkos::deep_copy(aijkokB->colmap_d, h_colmap_k); 1857300d22a6SJunchao Zhang h_mat.colmap = aijkokB->colmap_d.data(); 18589566063dSJacob Faibussowitsch PetscCall(PetscFree(colmap)); 1859a587d139SMark } 1860a587d139SMark h_mat.offdiag.ignorezeroentries = jacb->ignorezeroentries; 1861a587d139SMark h_mat.offdiag.n = n; 1862a587d139SMark } 1863a587d139SMark // allocate A copy data 1864a587d139SMark nnz = jaca->i[n]; 1865a587d139SMark h_mat.diag.n = n; 1866a587d139SMark h_mat.diag.ignorezeroentries = jaca->ignorezeroentries; 18679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &h_mat.rank)); 1868d5b43468SJose E. Roman PetscCheck(!jaca->compressedrow.use, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A does not support compressed row (todo)"); 186999551766SMark Adams h_mat.diag.i = aijkokA->i_device_data(); 187099551766SMark Adams h_mat.diag.j = aijkokA->j_device_data(); 1871076ba34aSJunchao Zhang h_mat.diag.a = aijkokA->a_device_data(); 1872da81f932SPierre Jolivet // copy pointers and metadata to device 18739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSetDeviceMat(Amat, &h_mat)); 18749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGetDeviceMat(Amat, &d_mat)); 18759566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Create device Mat n=%" PetscInt_FMT " nnz=%" PetscInt_FMT "\n", h_mat.diag.n, nnz)); 1876a587d139SMark } 1877a587d139SMark *B = d_mat; // return it, set it in Mat, and set it up 1878a587d139SMark A->assembled = PETSC_FALSE; // ready to write with matsetvalues - this done (lazy) in normal MatSetValues 18793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1880a587d139SMark } 1881076ba34aSJunchao Zhang 1882d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatSeqAIJKokkosGetOffloadMask(Mat A, const char **mask) 1883d71ae5a4SJacob Faibussowitsch { 1884076ba34aSJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 1885076ba34aSJunchao Zhang 1886076ba34aSJunchao Zhang PetscFunctionBegin; 1887076ba34aSJunchao Zhang if (!aijkok) *mask = "AIJKOK_UNALLOCATED"; 1888076ba34aSJunchao Zhang else if (aijkok->a_dual.need_sync_host()) *mask = "PETSC_OFFLOAD_GPU"; 1889076ba34aSJunchao Zhang else if (aijkok->a_dual.need_sync_device()) *mask = "PETSC_OFFLOAD_CPU"; 1890076ba34aSJunchao Zhang else *mask = "PETSC_OFFLOAD_BOTH"; 18913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1892076ba34aSJunchao Zhang } 1893076ba34aSJunchao Zhang 1894d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatAIJKokkosPrintOffloadMask(Mat A) 1895d71ae5a4SJacob Faibussowitsch { 1896076ba34aSJunchao Zhang PetscMPIInt size; 1897076ba34aSJunchao Zhang Mat Ad, Ao; 1898076ba34aSJunchao Zhang const char *amask, *bmask; 1899076ba34aSJunchao Zhang 1900076ba34aSJunchao Zhang PetscFunctionBegin; 19019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1902076ba34aSJunchao Zhang 1903076ba34aSJunchao Zhang if (size == 1) { 19049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGetOffloadMask(A, &amask)); 19059566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%s\n", amask)); 1906076ba34aSJunchao Zhang } else { 1907076ba34aSJunchao Zhang Ad = ((Mat_MPIAIJ *)A->data)->A; 1908076ba34aSJunchao Zhang Ao = ((Mat_MPIAIJ *)A->data)->B; 19099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGetOffloadMask(Ad, &amask)); 19109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGetOffloadMask(Ao, &bmask)); 19119566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "Diag : Off-diag = %s : %s\n", amask, bmask)); 1912076ba34aSJunchao Zhang } 19133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1914076ba34aSJunchao Zhang } 1915