111d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 2f0e6e2d1SJunchao Zhang #include <petscpkg_version.h> 342550becSJunchao Zhang #include <petsc/private/sfimpl.h> 4*2c4ab24aSJunchao Zhang #include <../src/mat/impls/aij/seq/kokkos/aijkok.hpp> 58c3ff71bSJunchao Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 6076ba34aSJunchao Zhang #include <KokkosSparse_spadd.hpp> 70e3ece09SJunchao Zhang #include <KokkosSparse_spgemm.hpp> 811d22bbfSJunchao Zhang 9d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJKokkos(Mat A, MatAssemblyType mode) 10d71ae5a4SJacob Faibussowitsch { 1130203840SJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)A->data; 128c3ff71bSJunchao Zhang 138c3ff71bSJunchao Zhang PetscFunctionBegin; 149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd_MPIAIJ(A, mode)); 1530203840SJunchao Zhang /* E.g., MatCreateSubMatrix() calls MatCreateMPIAIJWithSeqAIJ(comm,A,B,..), which creates Bnew of SEQAIJ and destroys B of SEQAIJKOKKOS. 1630203840SJunchao Zhang Thus we finalize A/B/lvec's type in MatAssemblyEnd() to handle various cases. 1730203840SJunchao Zhang */ 1830203840SJunchao Zhang if (mode == MAT_FINAL_ASSEMBLY) { 1930203840SJunchao Zhang PetscCall(MatSetType(mpiaij->A, MATSEQAIJKOKKOS)); 2030203840SJunchao Zhang PetscCall(MatSetType(mpiaij->B, MATSEQAIJKOKKOS)); 2130203840SJunchao Zhang PetscCall(VecSetType(mpiaij->lvec, VECSEQKOKKOS)); 2230203840SJunchao Zhang } 23a587d139SMark 243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 258c3ff71bSJunchao Zhang } 268c3ff71bSJunchao Zhang 27d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJKokkos(Mat mat, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 28d71ae5a4SJacob Faibussowitsch { 298c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 308c3ff71bSJunchao Zhang 318c3ff71bSJunchao Zhang PetscFunctionBegin; 329566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 339566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 346a29ce69SStefano Zampini #if defined(PETSC_USE_DEBUG) 358c3ff71bSJunchao Zhang if (d_nnz) { 366a29ce69SStefano Zampini PetscInt i; 37ad540459SPierre Jolivet for (i = 0; i < mat->rmap->n; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 388c3ff71bSJunchao Zhang } 398c3ff71bSJunchao Zhang if (o_nnz) { 406a29ce69SStefano Zampini PetscInt i; 41ad540459SPierre Jolivet for (i = 0; i < mat->rmap->n; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 428c3ff71bSJunchao Zhang } 436a29ce69SStefano Zampini #endif 446a29ce69SStefano Zampini #if defined(PETSC_USE_CTABLE) 45eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 466a29ce69SStefano Zampini #else 479566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 486a29ce69SStefano Zampini #endif 499566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 519566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 526a29ce69SStefano Zampini /* Because the B will have been resized we simply destroy it and create a new one each time */ 539566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mpiaij->B)); 546a29ce69SStefano Zampini 556a29ce69SStefano Zampini if (!mpiaij->A) { 569566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &mpiaij->A)); 579566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mpiaij->A, mat->rmap->n, mat->cmap->n, mat->rmap->n, mat->cmap->n)); 586a29ce69SStefano Zampini } 596a29ce69SStefano Zampini if (!mpiaij->B) { 606a29ce69SStefano Zampini PetscMPIInt size; 619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size)); 629566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &mpiaij->B)); 639566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mpiaij->B, mat->rmap->n, size > 1 ? mat->cmap->N : 0, mat->rmap->n, size > 1 ? mat->cmap->N : 0)); 648c3ff71bSJunchao Zhang } 659566063dSJacob Faibussowitsch PetscCall(MatSetType(mpiaij->A, MATSEQAIJKOKKOS)); 669566063dSJacob Faibussowitsch PetscCall(MatSetType(mpiaij->B, MATSEQAIJKOKKOS)); 679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(mpiaij->A, d_nz, d_nnz)); 689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(mpiaij->B, o_nz, o_nnz)); 698c3ff71bSJunchao Zhang mat->preallocated = PETSC_TRUE; 703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 718c3ff71bSJunchao Zhang } 728c3ff71bSJunchao Zhang 73d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPIAIJKokkos(Mat mat, Vec xx, Vec yy) 74d71ae5a4SJacob Faibussowitsch { 758c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 768c3ff71bSJunchao Zhang PetscInt nt; 778c3ff71bSJunchao Zhang 788c3ff71bSJunchao Zhang PetscFunctionBegin; 799566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 8008401ef6SPierre Jolivet PetscCheck(nt == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->cmap->n, nt); 819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 829566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->mult)(mpiaij->A, xx, yy)); 839566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 849566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multadd)(mpiaij->B, mpiaij->lvec, yy, yy)); 853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 868c3ff71bSJunchao Zhang } 878c3ff71bSJunchao Zhang 88d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPIAIJKokkos(Mat mat, Vec xx, Vec yy, Vec zz) 89d71ae5a4SJacob Faibussowitsch { 908c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 918c3ff71bSJunchao Zhang PetscInt nt; 928c3ff71bSJunchao Zhang 938c3ff71bSJunchao Zhang PetscFunctionBegin; 949566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 9508401ef6SPierre Jolivet PetscCheck(nt == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->cmap->n, nt); 969566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 979566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->multadd)(mpiaij->A, xx, yy, zz)); 989566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 999566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multadd)(mpiaij->B, mpiaij->lvec, zz, zz)); 1003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1018c3ff71bSJunchao Zhang } 1028c3ff71bSJunchao Zhang 103d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_MPIAIJKokkos(Mat mat, Vec xx, Vec yy) 104d71ae5a4SJacob Faibussowitsch { 1058c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 1068c3ff71bSJunchao Zhang PetscInt nt; 1078c3ff71bSJunchao Zhang 1088c3ff71bSJunchao Zhang PetscFunctionBegin; 1099566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 11008401ef6SPierre Jolivet PetscCheck(nt == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->rmap->n, nt); 1119566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multtranspose)(mpiaij->B, xx, mpiaij->lvec)); 1129566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->multtranspose)(mpiaij->A, xx, yy)); 1139566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, mpiaij->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 1149566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, mpiaij->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 1153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1168c3ff71bSJunchao Zhang } 1178c3ff71bSJunchao Zhang 118076ba34aSJunchao Zhang /* Merge the "A, B" matrices of mat into a matrix C. mat's type is MPIAIJKOKKOS. C's type is MATSEQAIJKOKKOS. 119076ba34aSJunchao Zhang A is put before B. C's size would be A->rmap->n by (A->cmap->n + B->cmap->n). 120076ba34aSJunchao Zhang C still uses local column ids. Their corresponding global column ids are returned in glob. 121076ba34aSJunchao Zhang */ 122d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge_MPIAIJKokkos(Mat mat, MatReuse reuse, IS *glob, Mat *C) 123d71ae5a4SJacob Faibussowitsch { 124076ba34aSJunchao Zhang Mat Ad, Ao; 125076ba34aSJunchao Zhang const PetscInt *cmap; 126076ba34aSJunchao Zhang 127076ba34aSJunchao Zhang PetscFunctionBegin; 1289566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(mat, &Ad, &Ao, &cmap)); 1299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosMergeMats(Ad, Ao, reuse, C)); 130076ba34aSJunchao Zhang if (glob) { 131076ba34aSJunchao Zhang PetscInt cst, i, dn, on, *gidx; 1329566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, NULL, &dn)); 1339566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 1349566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cst, NULL)); 1359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 136076ba34aSJunchao Zhang for (i = 0; i < dn; i++) gidx[i] = cst + i; 137076ba34aSJunchao Zhang for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 1389566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 139076ba34aSJunchao Zhang } 1403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 141076ba34aSJunchao Zhang } 142076ba34aSJunchao Zhang 1430e3ece09SJunchao Zhang /* Structs used in matrix products of type C=AB, C=A^tB and C=B^tAB */ 144076ba34aSJunchao Zhang struct MatMatStruct { 1450e3ece09SJunchao Zhang PetscInt n, *garray; // C's garray and its size. 1460e3ece09SJunchao Zhang KokkosCsrMatrix Cd, Co; // C is in split form matrices (all in local column indcies) 1470e3ece09SJunchao Zhang KokkosCsrMatrix C1, C2, C3, C4; // intermediate mat products 1480e3ece09SJunchao Zhang KokkosCsrMatrix C2_mid, C4_mid; // alias of C2, C4; share their a[], i[], but with different j[] (hence column size) 1490e3ece09SJunchao Zhang PetscIntKokkosView E_NzLeft; 1500e3ece09SJunchao Zhang PetscSF sf = nullptr; // SF to bcast or reduce matrices E to F 1510e3ece09SJunchao Zhang MatScalarKokkosView rootBuf, leafBuf; 1520e3ece09SJunchao Zhang KokkosCsrMatrix Fd, Fo; // F in split form 1530e3ece09SJunchao Zhang 1540e3ece09SJunchao Zhang KernelHandle kh1; // compute C1, add C1+C3 or C1+Fd 1550e3ece09SJunchao Zhang KernelHandle kh2; // compute C2, add C2+C4 or C2+Fo 1560e3ece09SJunchao Zhang KernelHandle kh3; // compute C3 1570e3ece09SJunchao Zhang KernelHandle kh4; // compute C4 1580e3ece09SJunchao Zhang 159aaa8cc7dSPierre Jolivet PetscInt E_TeamSize; // kernel launching parameters in merging E or splitting F 1600e3ece09SJunchao Zhang PetscInt E_VectorLength; 1610e3ece09SJunchao Zhang PetscInt E_RowsPerTeam; 1620e3ece09SJunchao Zhang PetscInt F_TeamSize; 1630e3ece09SJunchao Zhang PetscInt F_VectorLength; 1640e3ece09SJunchao Zhang PetscInt F_RowsPerTeam; 165076ba34aSJunchao Zhang 166d71ae5a4SJacob Faibussowitsch ~MatMatStruct() 167d71ae5a4SJacob Faibussowitsch { 1683ba16761SJacob Faibussowitsch PetscFunctionBegin; 1693ba16761SJacob Faibussowitsch PetscCallAbort(PETSC_COMM_SELF, PetscSFDestroy(&sf)); 1703ba16761SJacob Faibussowitsch PetscFunctionReturnVoid(); 171076ba34aSJunchao Zhang } 172076ba34aSJunchao Zhang }; 173076ba34aSJunchao Zhang 174076ba34aSJunchao Zhang struct MatMatStruct_AB : public MatMatStruct { 1750e3ece09SJunchao Zhang PetscIntKokkosView F_NzLeft; // plans to split F (in leafbuf) into Fd, Fo 1760e3ece09SJunchao Zhang PetscIntKokkosView irootloc; // plans to put E (i.e., Bd, Bo) into rootBuf 1770e3ece09SJunchao Zhang PetscIntKokkosView rowoffset; 178076ba34aSJunchao Zhang }; 179076ba34aSJunchao Zhang 180076ba34aSJunchao Zhang struct MatMatStruct_AtB : public MatMatStruct { 1810e3ece09SJunchao Zhang MatColIdxKokkosView Fdjmap; // plans to reduce data in rootBuf to Fd, Fo 1820e3ece09SJunchao Zhang MatColIdxKokkosView Fdjperm; 1830e3ece09SJunchao Zhang MatColIdxKokkosView Fojmap; 1840e3ece09SJunchao Zhang MatColIdxKokkosView Fojperm; 185076ba34aSJunchao Zhang }; 186076ba34aSJunchao Zhang 1879371c9d4SSatish Balay struct MatProductData_MPIAIJKokkos { 1883ba16761SJacob Faibussowitsch MatMatStruct_AB *mmAB = nullptr; 1893ba16761SJacob Faibussowitsch MatMatStruct_AtB *mmAtB = nullptr; 1903ba16761SJacob Faibussowitsch PetscBool reusesym = PETSC_FALSE; 1910e3ece09SJunchao Zhang Mat Z = nullptr; // store Z=AB in computing BtAB 192076ba34aSJunchao Zhang 193d71ae5a4SJacob Faibussowitsch ~MatProductData_MPIAIJKokkos() 194d71ae5a4SJacob Faibussowitsch { 195076ba34aSJunchao Zhang delete mmAB; 196076ba34aSJunchao Zhang delete mmAtB; 1970e3ece09SJunchao Zhang PetscCallAbort(PETSC_COMM_SELF, MatDestroy(&Z)); 198076ba34aSJunchao Zhang } 199076ba34aSJunchao Zhang }; 200076ba34aSJunchao Zhang 201d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductDataDestroy_MPIAIJKokkos(void *data) 202d71ae5a4SJacob Faibussowitsch { 203076ba34aSJunchao Zhang PetscFunctionBegin; 2049566063dSJacob Faibussowitsch PetscCallCXX(delete static_cast<MatProductData_MPIAIJKokkos *>(data)); 2053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 206076ba34aSJunchao Zhang } 207076ba34aSJunchao Zhang 208076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices - Set the diag and offdiag matrices of a MATMPIAIJKOKKOS matrix. 209076ba34aSJunchao Zhang It is similar to MatCreateMPIAIJWithSplitArrays. 210076ba34aSJunchao Zhang 211076ba34aSJunchao Zhang Input Parameters: 212076ba34aSJunchao Zhang + mat - the MATMPIAIJKOKKOS matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set 213076ba34aSJunchao Zhang . A - the diag matrix using local col ids 214076ba34aSJunchao Zhang - B - the offdiag matrix using global col ids 215076ba34aSJunchao Zhang 2162fe279fdSBarry Smith Output Parameter: 217076ba34aSJunchao Zhang . mat - the updated MATMPIAIJKOKKOS matrix 218076ba34aSJunchao Zhang */ 2190e3ece09SJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Mat mat, Mat A, Mat B, PetscInt *garray) 220d71ae5a4SJacob Faibussowitsch { 221076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 222076ba34aSJunchao Zhang PetscInt m, n, M, N, Am, An, Bm, Bn; 223076ba34aSJunchao Zhang 224076ba34aSJunchao Zhang PetscFunctionBegin; 2259566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 2269566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 2279566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &Am, &An)); 2289566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &Bm, &Bn)); 229076ba34aSJunchao Zhang 230aed4548fSBarry Smith PetscCheck(m == Am && m == Bm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of rows do not match"); 23108401ef6SPierre Jolivet PetscCheck(n == An, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of columns do not match"); 2320e3ece09SJunchao Zhang // PetscCheck(N == Bn, PETSC_COMM_SELF, PETSC_ERR_PLIB, "global number of columns do not match"); 23308401ef6SPierre Jolivet PetscCheck(!mpiaij->A && !mpiaij->B, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A, B of the MPIAIJ matrix are not empty"); 234076ba34aSJunchao Zhang mpiaij->A = A; 235076ba34aSJunchao Zhang mpiaij->B = B; 2360e3ece09SJunchao Zhang mpiaij->garray = garray; 237076ba34aSJunchao Zhang 238076ba34aSJunchao Zhang mat->preallocated = PETSC_TRUE; 239076ba34aSJunchao Zhang mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 240076ba34aSJunchao Zhang 2419566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 2429566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 243076ba34aSJunchao Zhang /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 244076ba34aSJunchao Zhang also gets mpiaij->B compacted, with its col ids and size reduced 245076ba34aSJunchao Zhang */ 2469566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 2479566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 2489566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 250076ba34aSJunchao Zhang } 251076ba34aSJunchao Zhang 2520e3ece09SJunchao Zhang // Adapted from Kokkos-Kernels spmv_launch_parameters(), to get parameters in Kokkos nested loops which we used to merge or 2530e3ece09SJunchao Zhang // split csr matrices. The rule is to have "vector_length * team_size" be around 256 on GPUs (e.g., for a CUDA thread block) 2540e3ece09SJunchao Zhang template <class ExecutionSpace> 2550e3ece09SJunchao Zhang static PetscErrorCode MatMergeGetLaunchParameters(PetscInt numRows, PetscInt nnz, PetscInt rows_per_thread, PetscInt &team_size, PetscInt &vector_length, PetscInt &rows_per_team) 256d71ae5a4SJacob Faibussowitsch { 2570e3ece09SJunchao Zhang Kokkos::TeamPolicy<ExecutionSpace> teamPolicy(128, Kokkos::AUTO); 258076ba34aSJunchao Zhang 259076ba34aSJunchao Zhang PetscFunctionBegin; 2600e3ece09SJunchao Zhang PetscInt nnz_per_row = numRows ? (nnz / numRows) : 0; // we might meet empty matrices 261076ba34aSJunchao Zhang 2620e3ece09SJunchao Zhang if (nnz_per_row < 1) nnz_per_row = 1; 263076ba34aSJunchao Zhang 2640e3ece09SJunchao Zhang int max_vector_length = teamPolicy.vector_length_max(); 265076ba34aSJunchao Zhang 2660e3ece09SJunchao Zhang if (vector_length < 1) { 2670e3ece09SJunchao Zhang vector_length = 1; 2680e3ece09SJunchao Zhang while (vector_length < max_vector_length && vector_length * 6 < nnz_per_row) vector_length *= 2; 269076ba34aSJunchao Zhang } 270076ba34aSJunchao Zhang 2710e3ece09SJunchao Zhang // Determine rows per thread 2720e3ece09SJunchao Zhang if (rows_per_thread < 1) { 2730e3ece09SJunchao Zhang if (KokkosKernels::Impl::kk_is_gpu_exec_space<ExecutionSpace>()) rows_per_thread = 1; 2740e3ece09SJunchao Zhang else { 2750e3ece09SJunchao Zhang if (nnz_per_row < 20 && nnz > 5000000) { 2760e3ece09SJunchao Zhang rows_per_thread = 256; 2770e3ece09SJunchao Zhang } else rows_per_thread = 64; 278076ba34aSJunchao Zhang } 279076ba34aSJunchao Zhang } 280076ba34aSJunchao Zhang 2810e3ece09SJunchao Zhang if (team_size < 1) { 2820e3ece09SJunchao Zhang if (KokkosKernels::Impl::kk_is_gpu_exec_space<ExecutionSpace>()) { 2830e3ece09SJunchao Zhang team_size = 256 / vector_length; 284076ba34aSJunchao Zhang } else { 2850e3ece09SJunchao Zhang team_size = 1; 2860e3ece09SJunchao Zhang } 287076ba34aSJunchao Zhang } 288076ba34aSJunchao Zhang 2890e3ece09SJunchao Zhang rows_per_team = rows_per_thread * team_size; 290076ba34aSJunchao Zhang 2910e3ece09SJunchao Zhang if (rows_per_team < 0) { 2920e3ece09SJunchao Zhang PetscInt nnz_per_team = 4096; 2930e3ece09SJunchao Zhang PetscInt conc = ExecutionSpace().concurrency(); 2940e3ece09SJunchao Zhang while ((conc * nnz_per_team * 4 > nnz) && (nnz_per_team > 256)) nnz_per_team /= 2; 2950e3ece09SJunchao Zhang rows_per_team = (nnz_per_team + nnz_per_row - 1) / nnz_per_row; 2960e3ece09SJunchao Zhang } 2973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 298076ba34aSJunchao Zhang } 299076ba34aSJunchao Zhang 3000e3ece09SJunchao Zhang /* 3010e3ece09SJunchao Zhang Reduce two sets of global indices into local ones 302076ba34aSJunchao Zhang 303076ba34aSJunchao Zhang Input Parameters: 3040e3ece09SJunchao Zhang + n1 - size of garray1[], the first set 3050e3ece09SJunchao Zhang . garray1[n1] - a sorted global index array (without duplicates) 3060e3ece09SJunchao Zhang . m - size of indices[], the second set 3070e3ece09SJunchao Zhang - indices[m] - a unsorted global index array (might have duplicates), which will be updated on output into local ones 308076ba34aSJunchao Zhang 309076ba34aSJunchao Zhang Output Parameters: 3100e3ece09SJunchao Zhang + n2 - size of garray2[], the merged set, which combines garray1[] and indices[] 3110e3ece09SJunchao Zhang . garray2[n2] - allocated by callee using PetscMalloc1(). Contains sorted unique global indices (without duplicates). Caller needs to free it. 3120e3ece09SJunchao Zhang . map[n1] - allocated by caller. It gives garray1[i] = garray2[map[i]] 3130e3ece09SJunchao Zhang - indices[m] - on output, global indices in this array are rewritten with local ones, i.e, indices_input[i] = garray2[indices_output[i]] 314076ba34aSJunchao Zhang 3150e3ece09SJunchao Zhang Example, say 3160e3ece09SJunchao Zhang n1 = 5 3170e3ece09SJunchao Zhang garray1[5] = {1, 4, 7, 8, 10} 3180e3ece09SJunchao Zhang m = 4 3190e3ece09SJunchao Zhang indices[4] = {2, 4, 8, 9} 32011a5261eSBarry Smith 3210e3ece09SJunchao Zhang Combining them together, we have 7 global indices in garray2[] 3220e3ece09SJunchao Zhang n2 = 7 3230e3ece09SJunchao Zhang garray2[7] = {1, 2, 4, 7, 8, 9, 10} 3240e3ece09SJunchao Zhang 3250e3ece09SJunchao Zhang And we have map[] to connect "garray1[i] = garray2[map[i]], i=[0,n1)" 3260e3ece09SJunchao Zhang map[5] = {0, 2, 3, 4, 6} 3270e3ece09SJunchao Zhang 3280e3ece09SJunchao Zhang On output, indices[] is updated with local indices 3290e3ece09SJunchao Zhang indices[4] = {1, 2, 4, 5} 330076ba34aSJunchao Zhang */ 3310e3ece09SJunchao Zhang static PetscErrorCode ReduceTwoSetsOfGlobalIndices(PetscInt n1, const PetscInt *garray1, PetscInt m, PetscInt *indices, PetscInt *n2_, PetscInt **garray2_, PetscInt *map) 332d71ae5a4SJacob Faibussowitsch { 3330e3ece09SJunchao Zhang PetscHMapI g2l = nullptr; 3340e3ece09SJunchao Zhang PetscHashIter iter; 3350e3ece09SJunchao Zhang PetscInt tot, key, val; // total unique global indices. key is global id; val is local id 3360e3ece09SJunchao Zhang PetscInt n2, *garray2; 337076ba34aSJunchao Zhang 338076ba34aSJunchao Zhang PetscFunctionBegin; 3390e3ece09SJunchao Zhang tot = 0; 3400e3ece09SJunchao Zhang PetscCall(PetscHMapICreateWithSize(n1, &g2l)); 3410e3ece09SJunchao Zhang for (PetscInt i = 0; i < m; i++) { // insert those in indices[] 3420e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, indices[i], -1, &val)); // if not exist, val is set with -1 3430e3ece09SJunchao Zhang if (val < 0) PetscCall(PetscHMapISet(g2l, indices[i], tot++)); // val < 0 means gid is not in the hash table yet 344076ba34aSJunchao Zhang } 345076ba34aSJunchao Zhang 3460e3ece09SJunchao Zhang for (PetscInt i = 0; i < n1; i++) { // insert those in garray1[] 3470e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, garray1[i], -1, &val)); 3480e3ece09SJunchao Zhang if (val < 0) PetscCall(PetscHMapISet(g2l, garray1[i], tot++)); 349076ba34aSJunchao Zhang } 350076ba34aSJunchao Zhang 3510e3ece09SJunchao Zhang // Pull out (unique) globals in the hash table and put them in garray2[] 3520e3ece09SJunchao Zhang n2 = tot; 3530e3ece09SJunchao Zhang PetscCall(PetscMalloc1(n2, &garray2)); 3540e3ece09SJunchao Zhang tot = 0; 3550e3ece09SJunchao Zhang PetscHashIterBegin(g2l, iter); 3560e3ece09SJunchao Zhang while (!PetscHashIterAtEnd(g2l, iter)) { 3570e3ece09SJunchao Zhang PetscHashIterGetKey(g2l, iter, key); 3580e3ece09SJunchao Zhang PetscHashIterNext(g2l, iter); 3590e3ece09SJunchao Zhang garray2[tot++] = key; 360076ba34aSJunchao Zhang } 361076ba34aSJunchao Zhang 3620e3ece09SJunchao Zhang // Sort garray2[] and then map them to local indices starting from 0 3630e3ece09SJunchao Zhang PetscCall(PetscSortInt(n2, garray2)); 3640e3ece09SJunchao Zhang PetscCall(PetscHMapIClear(g2l)); 3650e3ece09SJunchao Zhang for (PetscInt i = 0; i < tot; i++) PetscCall(PetscHMapISet(g2l, garray2[i], i)); // i is the local id 366f0e6e2d1SJunchao Zhang 3670e3ece09SJunchao Zhang // Rewrite indices[] with local indices 368f0e6e2d1SJunchao Zhang for (PetscInt i = 0; i < m; i++) { 3690e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, indices[i], -1, &val)); 3700e3ece09SJunchao Zhang PetscAssert(val >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Met a negative local column index"); 3710e3ece09SJunchao Zhang indices[i] = val; 3720e3ece09SJunchao Zhang } 3730e3ece09SJunchao Zhang // Record the map that maps garray1[i] to garray2[map[i]] 3740e3ece09SJunchao Zhang for (PetscInt i = 0; i < n1; i++) PetscCall(PetscHMapIGetWithDefault(g2l, garray1[i], -1, &map[i])); 3750e3ece09SJunchao Zhang PetscCall(PetscHMapIDestroy(&g2l)); 3760e3ece09SJunchao Zhang *n2_ = n2; 3770e3ece09SJunchao Zhang *garray2_ = garray2; 3780e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 3790e3ece09SJunchao Zhang } 380f0e6e2d1SJunchao Zhang 3810e3ece09SJunchao Zhang /* 3820e3ece09SJunchao Zhang MatMPIAIJKokkosReduce - Reduce rows of a MPIAIJKOKKOS matrix (E, in split form) to produce another matrix (F, also in split form, stored in mm) 3830e3ece09SJunchao Zhang 3840e3ece09SJunchao Zhang It is the reverse of MatMPIAIJKokkosBcast() in some sense, but with a different signature since we do not really need a fully populated MPIAIJKOKKOS E. 3850e3ece09SJunchao Zhang 3860e3ece09SJunchao Zhang Think each row of E as a leaf, then the given ownerSF specifies roots for the leaves. Roots may connect to multiple leaves. 3870e3ece09SJunchao Zhang In this routine, we sparse-merge leaves (rows) at their roots to form potentially longer rows in F. F's number of rows will be nroots of ownerSF. 3880e3ece09SJunchao Zhang 3890e3ece09SJunchao Zhang Input Parameters: 3900e3ece09SJunchao Zhang + comm - MPI communicator of E 3910e3ece09SJunchao Zhang . A - diag block of E, using local column indices 3920e3ece09SJunchao Zhang . B - off-diag block of E, using local column indices 3930e3ece09SJunchao Zhang . cstart - (global) start column of Ed 3940e3ece09SJunchao Zhang . cend - (global) end column + 1 of Ed. In other words, E's column ownership is in range of [cstart, cend) 3950e3ece09SJunchao Zhang . garray1[n1] - global column indices of Eo. Here n1 is Eo's column size. 3960e3ece09SJunchao Zhang . ownerSF - the SF specifies ownership (root) of rows in E 3970e3ece09SJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 3980e3ece09SJunchao Zhang - mm - to stash intermediate data structures for reuse 3990e3ece09SJunchao Zhang 4000e3ece09SJunchao Zhang Output Parameters: 4010e3ece09SJunchao Zhang + map[n1] - allocated by caller. It maps garray1[] to garray2[]. See more at ReduceTwoSetsOfGlobalIndices(). 4020e3ece09SJunchao Zhang - mm - contains various info, such as garray2[], F (Fd, Fo) etc. 4030e3ece09SJunchao Zhang 4040e3ece09SJunchao Zhang Notes: 4050e3ece09SJunchao Zhang When reuse = MAT_REUSE_MATRIX, cstart, cend, garray1, ownerSF, map are not significant. 4060e3ece09SJunchao Zhang 4070e3ece09SJunchao Zhang */ 4080e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosReduceBegin(MPI_Comm comm, KokkosCsrMatrix A, KokkosCsrMatrix B, PetscInt cstart, PetscInt cend, const PetscInt *garray1, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AtB *mm) 4090e3ece09SJunchao Zhang { 4100e3ece09SJunchao Zhang PetscFunctionBegin; 4110e3ece09SJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 4120e3ece09SJunchao Zhang PetscInt Em = A.numRows(), Fm; 4130e3ece09SJunchao Zhang PetscInt n1 = B.numCols(); 4140e3ece09SJunchao Zhang 4150e3ece09SJunchao Zhang PetscCall(PetscSFGetGraph(ownerSF, &Fm, NULL, NULL, NULL)); // Fm = #rows of F = nroots of ownerSF 4160e3ece09SJunchao Zhang 4170e3ece09SJunchao Zhang // Do the analysis on host 4180e3ece09SJunchao Zhang auto Ai_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), A.graph.row_map); 4190e3ece09SJunchao Zhang auto Aj_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), A.graph.entries); 4200e3ece09SJunchao Zhang auto Bi_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), B.graph.row_map); 4210e3ece09SJunchao Zhang auto Bj_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), B.graph.entries); 4220e3ece09SJunchao Zhang const MatRowMapType *Ai = Ai_h.data(), *Bi = Bi_h.data(); 4230e3ece09SJunchao Zhang const MatColIdxType *Aj = Aj_h.data(), *Bj = Bj_h.data(); 4240e3ece09SJunchao Zhang 4250e3ece09SJunchao Zhang // Count how many nonzeros of each row in E are in the left of the diag block [cstart,cend) 4267b8d4ba6SJunchao Zhang PetscIntKokkosViewHost E_NzLeft_h(NoInit("E_NzLeft_h"), Em), E_RowLen_h(NoInit("E_RowLen_h"), Em); 4270e3ece09SJunchao Zhang PetscInt *E_NzLeft = E_NzLeft_h.data(), *E_RowLen = E_RowLen_h.data(); 4280e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) { 4290e3ece09SJunchao Zhang const PetscInt *first, *last, *it; 4300e3ece09SJunchao Zhang PetscInt count, step; 4310e3ece09SJunchao Zhang // std::lower_bound(first,last,cstart), but need to use global column indices 4320e3ece09SJunchao Zhang first = Bj + Bi[i]; 4330e3ece09SJunchao Zhang last = Bj + Bi[i + 1]; 434f0e6e2d1SJunchao Zhang count = last - first; 435f0e6e2d1SJunchao Zhang while (count > 0) { 436f0e6e2d1SJunchao Zhang it = first; 437f0e6e2d1SJunchao Zhang step = count / 2; 438f0e6e2d1SJunchao Zhang it += step; 4390e3ece09SJunchao Zhang if (garray1[*it] < cstart) { // map local to global 440f0e6e2d1SJunchao Zhang first = ++it; 441f0e6e2d1SJunchao Zhang count -= step + 1; 442f0e6e2d1SJunchao Zhang } else count = step; 443f0e6e2d1SJunchao Zhang } 4440e3ece09SJunchao Zhang E_NzLeft[i] = first - (Bj + Bi[i]); 4450e3ece09SJunchao Zhang E_RowLen[i] = (Ai[i + 1] - Ai[i]) + (Bi[i + 1] - Bi[i]); 446f0e6e2d1SJunchao Zhang } 447f0e6e2d1SJunchao Zhang 4480e3ece09SJunchao Zhang // Get length of rows (i.e., sizes of leaves) that contribute to my roots 4490e3ece09SJunchao Zhang const PetscMPIInt *iranks, *ranks; 4500e3ece09SJunchao Zhang const PetscInt *ioffset, *irootloc, *roffset, *rmine; 4510e3ece09SJunchao Zhang PetscInt niranks, nranks; 4520e3ece09SJunchao Zhang MPI_Request *reqs; 4530e3ece09SJunchao Zhang PetscMPIInt tag; 4540e3ece09SJunchao Zhang PetscSF reduceSF; 4550e3ece09SJunchao Zhang PetscInt *sdisp, *rdisp; 456f0e6e2d1SJunchao Zhang 4570e3ece09SJunchao Zhang PetscCall(PetscCommGetNewTag(comm, &tag)); 4580e3ece09SJunchao Zhang PetscCall(PetscSFGetLeafRanks(ownerSF, &niranks, &iranks, &ioffset, &irootloc)); // get leaf ranks connecting to roots on this process (I'll recv from them) 4590e3ece09SJunchao Zhang PetscCall(PetscSFGetRootRanks(ownerSF, &nranks, &ranks, &roffset, &rmine, NULL)); // get root ranks this process connects (I'll send to them) 460f0e6e2d1SJunchao Zhang 4610e3ece09SJunchao Zhang // Find out length of each row I will receive. Even for the same row index, when they are from 4620e3ece09SJunchao Zhang // different senders, they might have different lengths (and sparsity patterns) 4630e3ece09SJunchao Zhang PetscInt sendRowCnt = roffset[nranks], recvRowCnt = ioffset[niranks]; 4640e3ece09SJunchao Zhang PetscInt *sendRowLen, *recvRowLen; // lengths of rows of I need to send/recv per process 465f0e6e2d1SJunchao Zhang 4660e3ece09SJunchao Zhang PetscCall(PetscMalloc5(sendRowCnt, &sendRowLen, recvRowCnt + 1, &recvRowLen, nranks, &sdisp, niranks + 1, &rdisp, nranks + niranks, &reqs)); 4670e3ece09SJunchao Zhang 4680e3ece09SJunchao Zhang for (PetscInt i = 0; i < sendRowCnt; i++) sendRowLen[i] = E_RowLen[rmine[i]]; 4690e3ece09SJunchao Zhang recvRowLen[0] = 0; // since we will make it in CSR format later 4700e3ece09SJunchao Zhang recvRowLen++; // advance the pointer now 4710e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { MPI_Irecv(&recvRowLen[ioffset[i]], ioffset[i + 1] - ioffset[i], MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i]); } 4720e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { MPI_Isend(&sendRowLen[roffset[i]], roffset[i + 1] - roffset[i], MPIU_INT, ranks[i], tag, comm, &reqs[i]); } 4730e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(nranks + niranks, reqs, MPI_STATUSES_IGNORE)); 4740e3ece09SJunchao Zhang 4750e3ece09SJunchao Zhang // Build the real PetscSF for reducing E rows (buffer to buffer) 4760e3ece09SJunchao Zhang rdisp[0] = 0; 4770e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { 4780e3ece09SJunchao Zhang rdisp[i + 1] = rdisp[i]; 4790e3ece09SJunchao Zhang for (PetscInt j = ioffset[i]; j < ioffset[i + 1]; j++) { rdisp[i + 1] += recvRowLen[j]; } 4800e3ece09SJunchao Zhang } 4810e3ece09SJunchao Zhang recvRowLen--; // put it back into csr format 4820e3ece09SJunchao Zhang for (PetscInt i = 0; i < recvRowCnt; i++) recvRowLen[i + 1] += recvRowLen[i]; 4830e3ece09SJunchao Zhang 4840e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { MPI_Irecv(&sdisp[i], 1, MPIU_INT, ranks[i], tag, comm, &reqs[i]); } 4850e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { MPI_Isend(&rdisp[i], 1, MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i]); } 4860e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(nranks + niranks, reqs, MPI_STATUSES_IGNORE)); 4870e3ece09SJunchao Zhang 4880e3ece09SJunchao Zhang PetscInt nleaves = 0, Enz = 0; // leaves are nonzeros I will send 4890e3ece09SJunchao Zhang PetscInt nroots = rdisp[niranks]; // roots are nonzeros I will recv 4900e3ece09SJunchao Zhang PetscSFNode *iremote; 4910e3ece09SJunchao Zhang 4920e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) Enz += E_RowLen[i]; 4930e3ece09SJunchao Zhang PetscAssert(A.nnz() + B.nnz() == Enz, comm, PETSC_ERR_PLIB, "Enz should be equal to sum of nnz of A and B"); 4940e3ece09SJunchao Zhang PetscCallMPI(PetscMalloc1(Enz, &iremote)); // no free, since we give ownership to reduceSF 4950e3ece09SJunchao Zhang 4960e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { 4970e3ece09SJunchao Zhang PetscInt count = 0; 4980e3ece09SJunchao Zhang for (PetscInt j = roffset[i]; j < roffset[i + 1]; j++) count += E_RowLen[rmine[j]]; 4990e3ece09SJunchao Zhang for (PetscInt j = 0; j < count; j++) { 5000e3ece09SJunchao Zhang iremote[nleaves + j].rank = ranks[i]; 5010e3ece09SJunchao Zhang iremote[nleaves + j].index = sdisp[i] + j; 5020e3ece09SJunchao Zhang } 5030e3ece09SJunchao Zhang nleaves += count; 5040e3ece09SJunchao Zhang } 5050e3ece09SJunchao Zhang PetscCheck(nleaves == Enz, comm, PETSC_ERR_PLIB, "nleaves should be equal to Enz"); 5060e3ece09SJunchao Zhang 5070e3ece09SJunchao Zhang PetscCall(PetscSFCreate(comm, &reduceSF)); 5080e3ece09SJunchao Zhang PetscCall(PetscSFSetGraph(reduceSF, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 5090e3ece09SJunchao Zhang 5100e3ece09SJunchao Zhang // Copy (global) column indices of the needed rows in E to sendCol[], and then PetscSFReduce to recvCol[] 5110e3ece09SJunchao Zhang PetscInt *sendCol, *recvCol; 5120e3ece09SJunchao Zhang PetscCall(PetscMalloc2(nleaves, &sendCol, nroots, &recvCol)); 5130e3ece09SJunchao Zhang for (PetscInt k = 0; k < roffset[nranks]; k++) { 5140e3ece09SJunchao Zhang PetscInt i = rmine[k]; // row to be copied 5150e3ece09SJunchao Zhang PetscInt *buf = &sendCol[Ai[i] + Bi[i]]; 5160e3ece09SJunchao Zhang PetscInt nzLeft = E_NzLeft[i]; 5170e3ece09SJunchao Zhang PetscInt alen = Ai[i + 1] - Ai[i], blen = Bi[i + 1] - Bi[i]; 5180e3ece09SJunchao Zhang for (PetscInt j = 0; j < alen + blen; j++) { 5190e3ece09SJunchao Zhang if (j < nzLeft) { 5200e3ece09SJunchao Zhang buf[j] = garray1[Bj[Bi[i] + j]]; // left B, in global 5210e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { 5220e3ece09SJunchao Zhang buf[j] = Aj[Ai[i] + j - nzLeft] + cstart; // diag A, also in global 5230e3ece09SJunchao Zhang } else { 5240e3ece09SJunchao Zhang buf[j] = garray1[Bj[Bi[i] + j - alen]]; // right B, in global 5250e3ece09SJunchao Zhang } 5260e3ece09SJunchao Zhang } 5270e3ece09SJunchao Zhang } 5280e3ece09SJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(reduceSF, MPIU_INT, PETSC_MEMTYPE_HOST, sendCol, PETSC_MEMTYPE_HOST, recvCol, MPI_REPLACE)); 5290e3ece09SJunchao Zhang PetscCall(PetscSFReduceEnd(reduceSF, MPIU_INT, sendCol, recvCol, MPI_REPLACE)); 5300e3ece09SJunchao Zhang 5310e3ece09SJunchao Zhang // With recvCol[], we do a series of analysis to get i, j of Fd, Fo, and build plans to reduce nonzeros in recv buffers to Fd and Fo 5320e3ece09SJunchao Zhang PetscInt *recvRowPerm, *recvColSorted; 5330e3ece09SJunchao Zhang PetscInt *recvNzPerm, *recvNzPermSorted; 5340e3ece09SJunchao Zhang PetscCall(PetscMalloc4(recvRowCnt, &recvRowPerm, nroots, &recvColSorted, nroots, &recvNzPerm, nroots, &recvNzPermSorted)); 5350e3ece09SJunchao Zhang 5360e3ece09SJunchao Zhang for (PetscInt i = 0; i < nroots; i++) recvNzPerm[i] = i; // numbering all received nonzeros 5370e3ece09SJunchao Zhang for (PetscInt i = 0; i < recvRowCnt; i++) recvRowPerm[i] = i; // put up a permutation array, so that after sorting we know where to get a row in recvCol[] 5380e3ece09SJunchao Zhang PetscCall(PetscSortIntWithPermutation(recvRowCnt, irootloc, recvRowPerm)); // irootloc[] (owned by ownerSF) won't be changed 5390e3ece09SJunchao Zhang 5400e3ece09SJunchao Zhang // i[] array, nz are always easiest to compute 5417b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdi_h(NoInit("Fdi_h"), Fm + 1), Foi_h(NoInit("Foi_h"), Fm + 1); 5420e3ece09SJunchao Zhang MatRowMapType *Fdi, *Foi; 5430e3ece09SJunchao Zhang PetscInt FnzDups = 0, Fdnz = 0, FdnzDups = 0, Fonz = 0, FonzDups = 0; // nz (with or without dups) in F, Fd, Fo 5440e3ece09SJunchao Zhang PetscInt iter; 5450e3ece09SJunchao Zhang 5460e3ece09SJunchao Zhang Kokkos::deep_copy(Fdi_h, 0); // zero, as we will do 'val++' on them 5470e3ece09SJunchao Zhang Kokkos::deep_copy(Foi_h, 0); 5480e3ece09SJunchao Zhang Fdi = Fdi_h.data() + 1; // +1 for easy indexing in code below 5490e3ece09SJunchao Zhang Foi = Foi_h.data() + 1; 5500e3ece09SJunchao Zhang iter = 0; 5510e3ece09SJunchao Zhang while (iter < recvRowCnt) { // iter over received rows 5520e3ece09SJunchao Zhang PetscInt curRowIdx = irootloc[recvRowPerm[iter]]; 5530e3ece09SJunchao Zhang PetscInt dupRows = 1; // current row has this many contributing rows (of various sparsity patterns) 5540e3ece09SJunchao Zhang 5550e3ece09SJunchao Zhang while (iter + dupRows < recvRowCnt && irootloc[recvRowPerm[iter + dupRows]] == curRowIdx) dupRows++; 5560e3ece09SJunchao Zhang 5570e3ece09SJunchao Zhang // Copy column indices (and their permutation) of these rows into recvColSorted & recvNzPermSorted 5580e3ece09SJunchao Zhang PetscInt nz = 0; // nz (with dups) in the current row 5590e3ece09SJunchao Zhang PetscInt *jbuf = recvColSorted + FnzDups; 5600e3ece09SJunchao Zhang PetscInt *pbuf = recvNzPermSorted + FnzDups; 5610e3ece09SJunchao Zhang PetscInt *jbuf2 = jbuf; // temp pointers 5620e3ece09SJunchao Zhang PetscInt *pbuf2 = pbuf; 5630e3ece09SJunchao Zhang for (PetscInt d = 0; d < dupRows; d++) { 5640e3ece09SJunchao Zhang PetscInt i = recvRowPerm[iter + d]; 5650e3ece09SJunchao Zhang PetscInt len = recvRowLen[i + 1] - recvRowLen[i]; 5660e3ece09SJunchao Zhang PetscCall(PetscArraycpy(jbuf2, &recvCol[recvRowLen[i]], len)); 5670e3ece09SJunchao Zhang PetscCall(PetscArraycpy(pbuf2, &recvNzPerm[recvRowLen[i]], len)); 5680e3ece09SJunchao Zhang jbuf2 += len; 5690e3ece09SJunchao Zhang pbuf2 += len; 5700e3ece09SJunchao Zhang nz += len; 5710e3ece09SJunchao Zhang } 5720e3ece09SJunchao Zhang PetscCall(PetscIntSortSemiOrderedWithArray(nz, jbuf, pbuf)); // It could be improved with k-way merge sort, since the rows are already sorted 5730e3ece09SJunchao Zhang 5740e3ece09SJunchao Zhang // Scan column indices (in jbuf[0,nz), might have dups) of this row, and see how many go to Fd and how many go to Fo 5750e3ece09SJunchao Zhang PetscInt cur = 0; 5760e3ece09SJunchao Zhang while (cur < nz) { 5770e3ece09SJunchao Zhang PetscInt curColIdx = jbuf[cur]; 5780e3ece09SJunchao Zhang PetscInt dups = 1; 5790e3ece09SJunchao Zhang 5800e3ece09SJunchao Zhang while (cur + dups < nz && jbuf[cur + dups] == curColIdx) dups++; 5810e3ece09SJunchao Zhang if (curColIdx >= cstart && curColIdx < cend) { 5820e3ece09SJunchao Zhang Fdi[curRowIdx]++; 5830e3ece09SJunchao Zhang FdnzDups += dups; 5840e3ece09SJunchao Zhang } else { 5850e3ece09SJunchao Zhang Foi[curRowIdx]++; 5860e3ece09SJunchao Zhang FonzDups += dups; 5870e3ece09SJunchao Zhang } 5880e3ece09SJunchao Zhang cur += dups; 5890e3ece09SJunchao Zhang } 5900e3ece09SJunchao Zhang 5910e3ece09SJunchao Zhang FnzDups += nz; 5920e3ece09SJunchao Zhang iter += dupRows; // Move to next unique row 5930e3ece09SJunchao Zhang } 5940e3ece09SJunchao Zhang 5950e3ece09SJunchao Zhang Fdi = Fdi_h.data(); // restore Fdi, Foi and make them CSR 5960e3ece09SJunchao Zhang Foi = Foi_h.data(); 5970e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 5980e3ece09SJunchao Zhang Fdi[i + 1] += Fdi[i]; 5990e3ece09SJunchao Zhang Foi[i + 1] += Foi[i]; 6000e3ece09SJunchao Zhang } 6010e3ece09SJunchao Zhang Fdnz = Fdi[Fm]; 6020e3ece09SJunchao Zhang Fonz = Foi[Fm]; 6030e3ece09SJunchao Zhang PetscCall(PetscFree2(sendCol, recvCol)); 6040e3ece09SJunchao Zhang 6050e3ece09SJunchao Zhang // Allocate j, jmap, jperm for Fd and Fo 6067b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost Fdj_h(NoInit("Fdj_h"), Fdnz), Foj_h(NoInit("Foj_h"), Fonz); 6077b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdjmap_h(NoInit("Fdjmap_h"), Fdnz + 1), Fojmap_h(NoInit("Fojmap_h"), Fonz + 1); // +1 to make csr 6087b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdjperm_h(NoInit("Fdjperm_h"), FdnzDups), Fojperm_h(NoInit("Fojperm_h"), FonzDups); 6090e3ece09SJunchao Zhang MatColIdxType *Fdj = Fdj_h.data(), *Foj = Foj_h.data(); 6100e3ece09SJunchao Zhang MatRowMapType *Fdjmap = Fdjmap_h.data(), *Fojmap = Fojmap_h.data(); 6110e3ece09SJunchao Zhang MatRowMapType *Fdjperm = Fdjperm_h.data(), *Fojperm = Fojperm_h.data(); 6120e3ece09SJunchao Zhang 6130e3ece09SJunchao Zhang // Scan recvColSorted[] again, and fill j, jmap, jperm for Fd and Fo 6140e3ece09SJunchao Zhang Fdjmap[0] = 0; 6150e3ece09SJunchao Zhang Fojmap[0] = 0; 6160e3ece09SJunchao Zhang FnzDups = 0; 6170e3ece09SJunchao Zhang Fdnz = 0; 6180e3ece09SJunchao Zhang Fonz = 0; 6190e3ece09SJunchao Zhang iter = 0; // iter over received rows 6200e3ece09SJunchao Zhang while (iter < recvRowCnt) { 6210e3ece09SJunchao Zhang PetscInt curRowIdx = irootloc[recvRowPerm[iter]]; // current row idx 6220e3ece09SJunchao Zhang PetscInt dupRows = 1; // It has this many contributing rows (of various lengths) 6230e3ece09SJunchao Zhang PetscInt nz = 0; // nz (with dups) in the current row 6240e3ece09SJunchao Zhang 6250e3ece09SJunchao Zhang while (iter + dupRows < recvRowCnt && irootloc[recvRowPerm[iter + dupRows]] == curRowIdx) dupRows++; 6260e3ece09SJunchao Zhang for (PetscInt d = 0; d < dupRows; d++) { 6270e3ece09SJunchao Zhang PetscInt i = recvRowPerm[iter + d]; 6280e3ece09SJunchao Zhang nz += recvRowLen[i + 1] - recvRowLen[i]; 6290e3ece09SJunchao Zhang } 6300e3ece09SJunchao Zhang 6310e3ece09SJunchao Zhang PetscInt *jbuf = recvColSorted + FnzDups; 6320e3ece09SJunchao Zhang // Scan columns (in jbuf[0,nz) of this row, copy them and their permutation to j[] and jperm[] of Fd and Fo 6330e3ece09SJunchao Zhang PetscInt cur = 0; 6340e3ece09SJunchao Zhang while (cur < nz) { 6350e3ece09SJunchao Zhang PetscInt curColIdx = jbuf[cur]; 6360e3ece09SJunchao Zhang PetscInt dups = 1; 6370e3ece09SJunchao Zhang 6380e3ece09SJunchao Zhang while (cur + dups < nz && jbuf[cur + dups] == curColIdx) dups++; 6390e3ece09SJunchao Zhang if (curColIdx >= cstart && curColIdx < cend) { 6400e3ece09SJunchao Zhang Fdj[Fdnz] = curColIdx - cstart; // easily convert to local 6410e3ece09SJunchao Zhang Fdjmap[Fdnz + 1] = Fdjmap[Fdnz] + dups; 6420e3ece09SJunchao Zhang for (PetscInt j = 0; j < dups; j++) Fdjperm[Fdjmap[Fdnz] + j] = recvNzPermSorted[FnzDups + j]; 6430e3ece09SJunchao Zhang FdnzDups += dups; 6440e3ece09SJunchao Zhang Fdnz++; 6450e3ece09SJunchao Zhang } else { 6460e3ece09SJunchao Zhang Foj[Fonz] = curColIdx; // in global 6470e3ece09SJunchao Zhang Fojmap[Fonz + 1] = Fojmap[Fonz] + dups; 6480e3ece09SJunchao Zhang for (PetscInt j = 0; j < dups; j++) Fojperm[Fojmap[Fonz] + j] = recvNzPermSorted[FnzDups + j]; 6490e3ece09SJunchao Zhang FonzDups += dups; 6500e3ece09SJunchao Zhang Fonz++; 6510e3ece09SJunchao Zhang } 6520e3ece09SJunchao Zhang cur += dups; 6530e3ece09SJunchao Zhang FnzDups += dups; 6540e3ece09SJunchao Zhang } 6550e3ece09SJunchao Zhang iter += dupRows; // Move to next unique row 6560e3ece09SJunchao Zhang } 6570e3ece09SJunchao Zhang PetscCall(PetscFree4(recvRowPerm, recvColSorted, recvNzPerm, recvNzPermSorted)); 6580e3ece09SJunchao Zhang PetscCall(PetscFree5(sendRowLen, recvRowLen, sdisp, rdisp, reqs)); 6590e3ece09SJunchao Zhang 6600e3ece09SJunchao Zhang // Combine global column indices in garray1[] and Foj[] 6610e3ece09SJunchao Zhang PetscInt n2, *garray2; 6620e3ece09SJunchao Zhang 6630e3ece09SJunchao Zhang PetscCall(ReduceTwoSetsOfGlobalIndices(n1, garray1, Fonz, Foj, &n2, &garray2, map)); 6640e3ece09SJunchao Zhang mm->sf = reduceSF; 6657b8d4ba6SJunchao Zhang mm->leafBuf = MatScalarKokkosView(NoInit("leafBuf"), nleaves); 6667b8d4ba6SJunchao Zhang mm->rootBuf = MatScalarKokkosView(NoInit("rootBuf"), nroots); 667aaa8cc7dSPierre Jolivet mm->garray = garray2; // give ownership, so no free 6680e3ece09SJunchao Zhang mm->n = n2; 6690e3ece09SJunchao Zhang mm->E_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), E_NzLeft_h); 6700e3ece09SJunchao Zhang mm->Fdjmap = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdjmap_h); 6710e3ece09SJunchao Zhang mm->Fdjperm = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdjperm_h); 6720e3ece09SJunchao Zhang mm->Fojmap = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fojmap_h); 6730e3ece09SJunchao Zhang mm->Fojperm = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fojperm_h); 6740e3ece09SJunchao Zhang 6750e3ece09SJunchao Zhang // Output Fd and Fo in KokkosCsrMatrix format 6767b8d4ba6SJunchao Zhang MatScalarKokkosView Fda_d(NoInit("Fda_d"), Fdnz); 6770e3ece09SJunchao Zhang MatRowMapKokkosView Fdi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdi_h); 6780e3ece09SJunchao Zhang MatColIdxKokkosView Fdj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdj_h); 6797b8d4ba6SJunchao Zhang MatScalarKokkosView Foa_d(NoInit("Foa_d"), Fonz); 6800e3ece09SJunchao Zhang MatRowMapKokkosView Foi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foi_h); 6810e3ece09SJunchao Zhang MatColIdxKokkosView Foj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foj_h); 6820e3ece09SJunchao Zhang 6830e3ece09SJunchao Zhang PetscCallCXX(mm->Fd = KokkosCsrMatrix("Fd", Fm, cend - cstart, Fdnz, Fda_d, Fdi_d, Fdj_d)); 6840e3ece09SJunchao Zhang PetscCallCXX(mm->Fo = KokkosCsrMatrix("Fo", Fm, n2, Fonz, Foa_d, Foi_d, Foj_d)); // Fo's column size is n2, length of garray2[] 6850e3ece09SJunchao Zhang 6860e3ece09SJunchao Zhang // Compute kernel launch parameters in merging E 6870e3ece09SJunchao Zhang PetscInt teamSize, vectorLength, rowsPerTeam; 6880e3ece09SJunchao Zhang 6890e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 6900e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(Em, Enz, -1, teamSize, vectorLength, rowsPerTeam)); 6910e3ece09SJunchao Zhang mm->E_TeamSize = teamSize; 6920e3ece09SJunchao Zhang mm->E_VectorLength = vectorLength; 6930e3ece09SJunchao Zhang mm->E_RowsPerTeam = rowsPerTeam; 6940e3ece09SJunchao Zhang } else PetscCheck(reuse == MAT_REUSE_MATRIX, comm, PETSC_ERR_PLIB, "Unsupported MatReuse enum %d", reuse); 6950e3ece09SJunchao Zhang 6960e3ece09SJunchao Zhang // Handy aliases 6970e3ece09SJunchao Zhang auto &Aa = A.values; 6980e3ece09SJunchao Zhang auto &Ba = B.values; 6990e3ece09SJunchao Zhang const auto &Ai = A.graph.row_map; 7000e3ece09SJunchao Zhang const auto &Bi = B.graph.row_map; 7010e3ece09SJunchao Zhang const auto &E_NzLeft = mm->E_NzLeft; 7020e3ece09SJunchao Zhang auto &leafBuf = mm->leafBuf; 7030e3ece09SJunchao Zhang auto &rootBuf = mm->rootBuf; 7040e3ece09SJunchao Zhang PetscSF reduceSF = mm->sf; 7050e3ece09SJunchao Zhang PetscInt Em = A.numRows(); 7060e3ece09SJunchao Zhang PetscInt teamSize = mm->E_TeamSize; 7070e3ece09SJunchao Zhang PetscInt vectorLength = mm->E_VectorLength; 7080e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->E_RowsPerTeam; 7090e3ece09SJunchao Zhang PetscInt workSets = (Em + rowsPerTeam - 1) / rowsPerTeam; 7100e3ece09SJunchao Zhang 7110e3ece09SJunchao Zhang // Copy rows in A/B of E to leafBuf, then pass it to rootBuf 7120e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 7130e3ece09SJunchao Zhang Kokkos::TeamPolicy<>(workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 7140e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 7150e3ece09SJunchao Zhang PetscInt i = t.league_rank() * rowsPerTeam + k; // i-th row in F 7160e3ece09SJunchao Zhang if (i < Em) { 7170e3ece09SJunchao Zhang PetscInt disp = Ai(i) + Bi(i); 7180e3ece09SJunchao Zhang PetscInt alen = Ai(i + 1) - Ai(i); 7190e3ece09SJunchao Zhang PetscInt blen = Bi(i + 1) - Bi(i); 7200e3ece09SJunchao Zhang PetscInt nzleft = E_NzLeft(i); 7210e3ece09SJunchao Zhang 7220e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 7230e3ece09SJunchao Zhang MatScalar &val = leafBuf(disp + j); 7240e3ece09SJunchao Zhang if (j < nzleft) { // B left 7250e3ece09SJunchao Zhang val = Ba(Bi(i) + j); 7260e3ece09SJunchao Zhang } else if (j < nzleft + alen) { // diag A 7270e3ece09SJunchao Zhang val = Aa(Ai(i) + j - nzleft); 7280e3ece09SJunchao Zhang } else { // B right 7290e3ece09SJunchao Zhang val = Ba(Bi(i) + j - alen); 730f0e6e2d1SJunchao Zhang } 731f0e6e2d1SJunchao Zhang }); 732f0e6e2d1SJunchao Zhang } 733f0e6e2d1SJunchao Zhang }); 7340e3ece09SJunchao Zhang })); 7350e3ece09SJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(reduceSF, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, leafBuf.data(), PETSC_MEMTYPE_KOKKOS, rootBuf.data(), MPI_REPLACE)); 736f0e6e2d1SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 737f0e6e2d1SJunchao Zhang } 7380e3ece09SJunchao Zhang 739aaa8cc7dSPierre Jolivet // To finish MatMPIAIJKokkosReduce. 7400e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosReduceEnd(MPI_Comm comm, KokkosCsrMatrix A, KokkosCsrMatrix B, PetscInt cstart, PetscInt cend, const PetscInt *garray1, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AtB *mm) 7410e3ece09SJunchao Zhang { 7420e3ece09SJunchao Zhang PetscFunctionBegin; 7430e3ece09SJunchao Zhang auto &leafBuf = mm->leafBuf; 7440e3ece09SJunchao Zhang auto &rootBuf = mm->rootBuf; 7450e3ece09SJunchao Zhang auto &Fda = mm->Fd.values; 7460e3ece09SJunchao Zhang const auto &Fdjmap = mm->Fdjmap; 7470e3ece09SJunchao Zhang const auto &Fdjperm = mm->Fdjperm; 7480e3ece09SJunchao Zhang auto Fdnz = mm->Fd.nnz(); 7490e3ece09SJunchao Zhang auto &Foa = mm->Fo.values; 7500e3ece09SJunchao Zhang const auto &Fojmap = mm->Fojmap; 7510e3ece09SJunchao Zhang const auto &Fojperm = mm->Fojperm; 7520e3ece09SJunchao Zhang auto Fonz = mm->Fo.nnz(); 7530e3ece09SJunchao Zhang PetscSF reduceSF = mm->sf; 7540e3ece09SJunchao Zhang 7550e3ece09SJunchao Zhang PetscCall(PetscSFReduceEnd(reduceSF, MPIU_SCALAR, leafBuf.data(), rootBuf.data(), MPI_REPLACE)); 7560e3ece09SJunchao Zhang 7570e3ece09SJunchao Zhang // Reduce data in rootBuf to Fd and Fo 7580e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 7590e3ece09SJunchao Zhang Fdnz, KOKKOS_LAMBDA(const MatRowMapType i) { 7600e3ece09SJunchao Zhang PetscScalar sum = 0.0; 7610e3ece09SJunchao Zhang for (MatRowMapType k = Fdjmap(i); k < Fdjmap(i + 1); k++) sum += rootBuf(Fdjperm(k)); 7620e3ece09SJunchao Zhang Fda(i) = sum; 7630e3ece09SJunchao Zhang })); 7640e3ece09SJunchao Zhang 7650e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 7660e3ece09SJunchao Zhang Fonz, KOKKOS_LAMBDA(const MatRowMapType i) { 7670e3ece09SJunchao Zhang PetscScalar sum = 0.0; 7680e3ece09SJunchao Zhang for (MatRowMapType k = Fojmap(i); k < Fojmap(i + 1); k++) sum += rootBuf(Fojperm(k)); 7690e3ece09SJunchao Zhang Foa(i) = sum; 7700e3ece09SJunchao Zhang })); 7710e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 7720e3ece09SJunchao Zhang } 7730e3ece09SJunchao Zhang 7740e3ece09SJunchao Zhang /* 7750e3ece09SJunchao Zhang MatMPIAIJKokkosBcast - Bcast local rows of a MPIAIJKOKKOS matrix (E) to produce a local matrix (F, stored in mm) in split form 7760e3ece09SJunchao Zhang 7770e3ece09SJunchao Zhang This is a complex routine. It is essentially the MPIAIJKOKKOS counterpart of MatGetBrowsOfAoCols_MPIAIJ, but supports 7780e3ece09SJunchao Zhang device and involves various index mapping. 7790e3ece09SJunchao Zhang 7800e3ece09SJunchao Zhang In the given ownerSF, leaves correspond to rows in F, and roots correspond to rows in E. Roots may connect to multiple leaves. 7810e3ece09SJunchao Zhang Suppose F's j-th row is connected to a root identified by PetscSFNode (k,i), it means we need to bcast the i-th row of E on rank k 7820e3ece09SJunchao Zhang to j-th row of F. ownerSF is not an arbitrary SF, instead it is the Mvctx of another MPIAIJ matrix A that is able to perform A*E. 7830e3ece09SJunchao Zhang F has the same column layout as E. 7840e3ece09SJunchao Zhang 7850e3ece09SJunchao Zhang Conceptually F has global column indices. In this routine, we spit F into diagonal Fd and off-diagonal Fo. 786aaa8cc7dSPierre Jolivet Fd uses local column indices, which are easy to compute. We just need to subtract the "local column range start" from the global indices. 7870e3ece09SJunchao Zhang Fo had global column indices at first. We will reduce them into local ones. In doing that, we also take into account the global 7880e3ece09SJunchao Zhang column indices that E's off-diag block has. Let's say there are n1 such indices stored in garray1[]. We will reduce them along with 7890e3ece09SJunchao Zhang column indices in Fo and update Fo with local indices. 7900e3ece09SJunchao Zhang 7910e3ece09SJunchao Zhang Input Parameters: 7920e3ece09SJunchao Zhang + E - the MPIAIJKOKKOS matrix 7930e3ece09SJunchao Zhang . ownerSF - the ownership SF (nonsignificant in MAT_REUSE_MATRIX) 7940e3ece09SJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 7950e3ece09SJunchao Zhang - mm - to stash matproduct intermediate data structures 7960e3ece09SJunchao Zhang 7970e3ece09SJunchao Zhang Output Parameters: 7980e3ece09SJunchao Zhang + map[n1] - allocated by caller. It maps garray1[] to garray2[]. See more at ReduceTwoSetsOfGlobalIndices. 7990e3ece09SJunchao Zhang - mm - contains various info, such as garray2[], Fd, Fo, etc. 8000e3ece09SJunchao Zhang 8010e3ece09SJunchao Zhang Notes: 8020e3ece09SJunchao Zhang When reuse = MAT_REUSE_MATRIX, ownerSF, map are not significant. 8030e3ece09SJunchao Zhang The routine is provide in split-phase form MatMPIAIJKokkosBcastBegin/End() to provide computation/communication opportunities. 8040e3ece09SJunchao Zhang */ 8050e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosBcastBegin(Mat E, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AB *mm) 8060e3ece09SJunchao Zhang { 8070e3ece09SJunchao Zhang Mat_MPIAIJ *empi = static_cast<Mat_MPIAIJ *>(E->data); 8080e3ece09SJunchao Zhang Mat A = empi->A, B = empi->B; // diag and off-diag 8090e3ece09SJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos *>(A->spptr), *bkok = static_cast<Mat_SeqAIJKokkos *>(B->spptr); 8100e3ece09SJunchao Zhang PetscInt Em = E->rmap->n; // #local rows 8110e3ece09SJunchao Zhang MPI_Comm comm; 8120e3ece09SJunchao Zhang 8130e3ece09SJunchao Zhang PetscFunctionBegin; 8140e3ece09SJunchao Zhang PetscCallMPI(PetscObjectGetComm((PetscObject)E, &comm)); 8150e3ece09SJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 8160e3ece09SJunchao Zhang Mat_SeqAIJ *aseq = static_cast<Mat_SeqAIJ *>(A->data), *bseq = static_cast<Mat_SeqAIJ *>(B->data); 8170e3ece09SJunchao Zhang PetscInt n1 = B->cmap->n, *Ai = aseq->i, *Aj = aseq->j, *Bi = bseq->i, *Bj = bseq->j; 8180e3ece09SJunchao Zhang const PetscInt *garray1 = empi->garray; // its size is n1 8190e3ece09SJunchao Zhang PetscInt cstart, cend; 8200e3ece09SJunchao Zhang PetscSF bcastSF; 8210e3ece09SJunchao Zhang 8220e3ece09SJunchao Zhang PetscCall(MatGetOwnershipRangeColumn(E, &cstart, &cend)); 8230e3ece09SJunchao Zhang 8240e3ece09SJunchao Zhang // Count how many nonzeros of each row in E are in the left of the diag block [cstart,cend) 8257b8d4ba6SJunchao Zhang PetscIntKokkosViewHost E_NzLeft_h(NoInit("E_NzLeft_h"), Em), E_RowLen_h(NoInit("E_RowLen_h"), Em); 8260e3ece09SJunchao Zhang PetscInt *E_NzLeft = E_NzLeft_h.data(), *E_RowLen = E_RowLen_h.data(); 8270e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) { 8280e3ece09SJunchao Zhang const PetscInt *first, *last, *it; 8290e3ece09SJunchao Zhang PetscInt count, step; 8300e3ece09SJunchao Zhang // std::lower_bound(first,last,cstart), but need to use global column indices 8310e3ece09SJunchao Zhang first = Bj + Bi[i]; 8320e3ece09SJunchao Zhang last = Bj + Bi[i + 1]; 8330e3ece09SJunchao Zhang count = last - first; 8340e3ece09SJunchao Zhang while (count > 0) { 8350e3ece09SJunchao Zhang it = first; 8360e3ece09SJunchao Zhang step = count / 2; 8370e3ece09SJunchao Zhang it += step; 8380e3ece09SJunchao Zhang if (empi->garray[*it] < cstart) { // map local to global 8390e3ece09SJunchao Zhang first = ++it; 8400e3ece09SJunchao Zhang count -= step + 1; 8410e3ece09SJunchao Zhang } else count = step; 8420e3ece09SJunchao Zhang } 8430e3ece09SJunchao Zhang E_NzLeft[i] = first - (Bj + Bi[i]); 8440e3ece09SJunchao Zhang E_RowLen[i] = (Ai[i + 1] - Ai[i]) + (Bi[i + 1] - Bi[i]); 8450e3ece09SJunchao Zhang } 8460e3ece09SJunchao Zhang 8470e3ece09SJunchao Zhang // Compute row pointer Fi of F 8480e3ece09SJunchao Zhang PetscInt *Fi, Fm, Fnz; 8490e3ece09SJunchao Zhang PetscCall(PetscSFGetGraph(ownerSF, NULL, &Fm, NULL, NULL)); // Fm = #rows of F = nleaves of ownerSF 8500e3ece09SJunchao Zhang PetscCall(PetscMalloc1(Fm + 1, &Fi)); 8510e3ece09SJunchao Zhang Fi[0] = 0; 8520e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(ownerSF, MPIU_INT, PETSC_MEMTYPE_HOST, E_RowLen, PETSC_MEMTYPE_HOST, &Fi[1], MPI_REPLACE)); 8530e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(ownerSF, MPIU_INT, E_RowLen, &Fi[1], MPI_REPLACE)); 8540e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) Fi[i + 1] += Fi[i]; 8550e3ece09SJunchao Zhang Fnz = Fi[Fm]; 8560e3ece09SJunchao Zhang 8570e3ece09SJunchao Zhang // Build the real PetscSF for bcasting E rows (buffer to buffer) 8580e3ece09SJunchao Zhang const PetscMPIInt *iranks, *ranks; 8590e3ece09SJunchao Zhang const PetscInt *ioffset, *irootloc, *roffset; 8600e3ece09SJunchao Zhang PetscInt niranks, nranks, *sdisp, *rdisp; 8610e3ece09SJunchao Zhang MPI_Request *reqs; 8620e3ece09SJunchao Zhang PetscMPIInt tag; 8630e3ece09SJunchao Zhang 8640e3ece09SJunchao Zhang PetscCall(PetscSFGetLeafRanks(ownerSF, &niranks, &iranks, &ioffset, &irootloc)); // get leaf ranks referencing roots on this process 8650e3ece09SJunchao Zhang PetscCall(PetscSFGetRootRanks(ownerSF, &nranks, &ranks, &roffset, NULL, NULL)); // recv info 8660e3ece09SJunchao Zhang PetscCall(PetscMalloc3(niranks + 1, &sdisp, nranks, &rdisp, niranks + nranks, &reqs)); 8670e3ece09SJunchao Zhang 8680e3ece09SJunchao Zhang sdisp[0] = 0; // send displacement 8690e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { 8700e3ece09SJunchao Zhang sdisp[i + 1] = sdisp[i]; 8710e3ece09SJunchao Zhang for (PetscInt j = ioffset[i]; j < ioffset[i + 1]; j++) { 8720e3ece09SJunchao Zhang PetscInt r = irootloc[j]; // row to be sent 8730e3ece09SJunchao Zhang sdisp[i + 1] += E_RowLen[r]; 8740e3ece09SJunchao Zhang } 8750e3ece09SJunchao Zhang } 8760e3ece09SJunchao Zhang 8770e3ece09SJunchao Zhang PetscCallMPI(PetscCommGetNewTag(comm, &tag)); 8780e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) PetscCallMPI(MPI_Irecv(&rdisp[i], 1, MPIU_INT, ranks[i], tag, comm, &reqs[i])); 8790e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) PetscCallMPI(MPI_Isend(&sdisp[i], 1, MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i])); 8800e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(niranks + nranks, reqs, MPI_STATUSES_IGNORE)); 8810e3ece09SJunchao Zhang 8820e3ece09SJunchao Zhang PetscInt nleaves = Fnz; // leaves are nonzeros I will receive 8830e3ece09SJunchao Zhang PetscInt nroots = sdisp[niranks]; // roots are nonzeros I will send 8840e3ece09SJunchao Zhang PetscSFNode *iremote; // give ownership to bcastSF 8850e3ece09SJunchao Zhang PetscCall(PetscMalloc1(nleaves, &iremote)); 8860e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { // for each sender rank 8870e3ece09SJunchao Zhang PetscInt k = 0; 8880e3ece09SJunchao Zhang for (PetscInt j = Fi[roffset[i]]; j < Fi[roffset[i + 1]]; j++) { // I will receive rows [roffset[i], roffset[i+1]) of F from ranks[i] 8890e3ece09SJunchao Zhang iremote[j].rank = ranks[i]; 8900e3ece09SJunchao Zhang iremote[j].index = rdisp[i] + k; // their root location 8910e3ece09SJunchao Zhang k++; 8920e3ece09SJunchao Zhang } 8930e3ece09SJunchao Zhang } 8940e3ece09SJunchao Zhang PetscCall(PetscSFCreate(comm, &bcastSF)); 8950e3ece09SJunchao Zhang PetscCall(PetscSFSetGraph(bcastSF, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 8960e3ece09SJunchao Zhang PetscCall(PetscFree3(sdisp, rdisp, reqs)); 8970e3ece09SJunchao Zhang 8980e3ece09SJunchao Zhang // Build a plan (rowoffset, irootloc, E_NzLeft) to copy rows in E to rootdata of bcastSF in parallel 8997b8d4ba6SJunchao Zhang PetscIntKokkosViewHost rowoffset_h(NoInit("rowoffset_h"), ioffset[niranks] + 1); 9000e3ece09SJunchao Zhang PetscInt *rowoffset = rowoffset_h.data(); // for each entry (row) indicated in irootloc[], we calculate its destinate offset in copying 9010e3ece09SJunchao Zhang rowoffset[0] = 0; 9027b8d4ba6SJunchao Zhang for (PetscInt i = 0; i < ioffset[niranks]; i++) { rowoffset[i + 1] = rowoffset[i] + E_RowLen[irootloc[i]]; } 9030e3ece09SJunchao Zhang 9040e3ece09SJunchao Zhang // Copy (global) column indices of the needed rows in E to a buffer, and then bcast to Fj[] 9050e3ece09SJunchao Zhang PetscInt *jbuf, *Fj; 9060e3ece09SJunchao Zhang PetscCall(PetscMalloc2(nroots, &jbuf, Fnz, &Fj)); 9070e3ece09SJunchao Zhang for (PetscInt k = 0; k < ioffset[niranks]; k++) { 9080e3ece09SJunchao Zhang PetscInt i = irootloc[k]; // row to be copied 9090e3ece09SJunchao Zhang PetscInt *buf = &jbuf[rowoffset[k]]; 9100e3ece09SJunchao Zhang PetscInt nzLeft = E_NzLeft[i]; 9110e3ece09SJunchao Zhang PetscInt alen = Ai[i + 1] - Ai[i], blen = Bi[i + 1] - Bi[i]; 9120e3ece09SJunchao Zhang for (PetscInt j = 0; j < alen + blen; j++) { 9130e3ece09SJunchao Zhang if (j < nzLeft) { 9140e3ece09SJunchao Zhang buf[j] = empi->garray[Bj[Bi[i] + j]]; // left B, in global 9150e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { 9160e3ece09SJunchao Zhang buf[j] = Aj[Ai[i] + j - nzLeft] + cstart; // diag A, also in global 9170e3ece09SJunchao Zhang } else { 9180e3ece09SJunchao Zhang buf[j] = empi->garray[Bj[Bi[i] + j - alen]]; // right B, in global 9190e3ece09SJunchao Zhang } 9200e3ece09SJunchao Zhang } 9210e3ece09SJunchao Zhang } 9220e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(bcastSF, MPIU_INT, PETSC_MEMTYPE_HOST, jbuf, PETSC_MEMTYPE_HOST, Fj, MPI_REPLACE)); 9230e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(bcastSF, MPIU_INT, jbuf, Fj, MPI_REPLACE)); 9240e3ece09SJunchao Zhang 9250e3ece09SJunchao Zhang // Build a plan (i.e., F_NzLeft) to split F into Fd and Fo 9267b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdi_h(NoInit("Fdi_h"), Fm + 1), Foi_h(NoInit("Foi_h"), Fm + 1); // row pointer of Fd, Fo 9277b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost F_NzLeft_h(NoInit("F_NzLeft_h"), Fm); // split each row of F into Left, Diag, Right. We only need to record #nz in Left and Diag. 9280e3ece09SJunchao Zhang MatRowMapType *Fdi = Fdi_h.data(), *Foi = Foi_h.data(); 9290e3ece09SJunchao Zhang MatColIdxType *F_NzLeft = F_NzLeft_h.data(); 9300e3ece09SJunchao Zhang 9310e3ece09SJunchao Zhang Fdi[0] = Foi[0] = 0; 9320e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9330e3ece09SJunchao Zhang PetscInt *first, *last, *lb1, *lb2; 9340e3ece09SJunchao Zhang // cut the row into: Left, [cstart, cend), Right 9350e3ece09SJunchao Zhang first = Fj + Fi[i]; 9360e3ece09SJunchao Zhang last = Fj + Fi[i + 1]; 9370e3ece09SJunchao Zhang lb1 = std::lower_bound(first, last, cstart); 9380e3ece09SJunchao Zhang F_NzLeft[i] = lb1 - first; 9390e3ece09SJunchao Zhang lb2 = std::lower_bound(first, last, cend); 9400e3ece09SJunchao Zhang Fdi[i + 1] = lb2 - lb1; // row i length in Fdi 9410e3ece09SJunchao Zhang Foi[i + 1] = (Fi[i + 1] - Fi[i]) - Fdi[i + 1]; // row i length in Foi 9420e3ece09SJunchao Zhang } 9430e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9440e3ece09SJunchao Zhang Fdi[i + 1] += Fdi[i]; 9450e3ece09SJunchao Zhang Foi[i + 1] += Foi[i]; 9460e3ece09SJunchao Zhang } 9470e3ece09SJunchao Zhang 9480e3ece09SJunchao Zhang // Fill Fdj[] and Foj[], i.e., columns of Fd and Fo. Fdj[] are local, but Foj[] are not yet. 9490e3ece09SJunchao Zhang PetscInt Fdnz = Fdi[Fm], Fonz = Foi[Fm]; 9507b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost Fdj_h(NoInit("Fdj_h"), Fdnz), Foj_h(NoInit("Foj_h"), Fonz); 9510e3ece09SJunchao Zhang MatColIdxType *Fdj = Fdj_h.data(), *Foj = Foj_h.data(), gid; 9520e3ece09SJunchao Zhang 9530e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9540e3ece09SJunchao Zhang PetscInt nzLeft = F_NzLeft[i]; 9550e3ece09SJunchao Zhang PetscInt len = Fdi[i + 1] - Fdi[i]; // diag row len 9560e3ece09SJunchao Zhang for (PetscInt j = 0; j < Fi[i + 1] - Fi[i]; j++) { 9570e3ece09SJunchao Zhang gid = Fj[Fi[i] + j]; 9580e3ece09SJunchao Zhang if (j < nzLeft) { // left, in global 9590e3ece09SJunchao Zhang Foj[Foi[i] + j] = gid; 9600e3ece09SJunchao Zhang } else if (j < nzLeft + len) { // diag, in local 9610e3ece09SJunchao Zhang Fdj[Fdi[i] + j - nzLeft] = gid - cstart; 9620e3ece09SJunchao Zhang } else { // right, in global 9630e3ece09SJunchao Zhang Foj[Foi[i] + j - len] = gid; 9640e3ece09SJunchao Zhang } 9650e3ece09SJunchao Zhang } 9660e3ece09SJunchao Zhang } 9670e3ece09SJunchao Zhang PetscCall(PetscFree2(jbuf, Fj)); 9680e3ece09SJunchao Zhang PetscCall(PetscFree(Fi)); 9690e3ece09SJunchao Zhang 9700e3ece09SJunchao Zhang // Reduce global indices in Foj[] and garray1[] into local ones 9710e3ece09SJunchao Zhang PetscInt n2, *garray2; 9720e3ece09SJunchao Zhang PetscCall(ReduceTwoSetsOfGlobalIndices(n1, garray1, Fonz, Foj, &n2, &garray2, map)); 9730e3ece09SJunchao Zhang 9740e3ece09SJunchao Zhang // Record the plans built above, for reuse 9750e3ece09SJunchao Zhang PetscIntKokkosViewHost tmp(const_cast<PetscInt *>(irootloc), ioffset[niranks]); // irootloc[] is owned by ownerSF. We create a copy for safety 9767b8d4ba6SJunchao Zhang PetscIntKokkosViewHost irootloc_h(NoInit("irootloc_h"), ioffset[niranks]); 9770e3ece09SJunchao Zhang Kokkos::deep_copy(irootloc_h, tmp); 9780e3ece09SJunchao Zhang mm->sf = bcastSF; 9790e3ece09SJunchao Zhang mm->E_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), E_NzLeft_h); 9800e3ece09SJunchao Zhang mm->F_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), F_NzLeft_h); 9810e3ece09SJunchao Zhang mm->irootloc = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), irootloc_h); 9820e3ece09SJunchao Zhang mm->rowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), rowoffset_h); 9837b8d4ba6SJunchao Zhang mm->rootBuf = MatScalarKokkosView(NoInit("rootBuf"), nroots); 9847b8d4ba6SJunchao Zhang mm->leafBuf = MatScalarKokkosView(NoInit("leafBuf"), nleaves); 9850e3ece09SJunchao Zhang mm->garray = garray2; 9860e3ece09SJunchao Zhang mm->n = n2; 9870e3ece09SJunchao Zhang 9880e3ece09SJunchao Zhang // Output Fd and Fo in KokkosCsrMatrix format 9897b8d4ba6SJunchao Zhang MatScalarKokkosView Fda_d(NoInit("Fda_d"), Fdnz), Foa_d(NoInit("Foa_d"), Fonz); 9900e3ece09SJunchao Zhang MatRowMapKokkosView Fdi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdi_h); 9910e3ece09SJunchao Zhang MatColIdxKokkosView Fdj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdj_h); 9920e3ece09SJunchao Zhang MatRowMapKokkosView Foi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foi_h); 9930e3ece09SJunchao Zhang MatColIdxKokkosView Foj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foj_h); 9940e3ece09SJunchao Zhang 9950e3ece09SJunchao Zhang PetscCallCXX(mm->Fd = KokkosCsrMatrix("Fd", Fm, cend - cstart, Fdnz, Fda_d, Fdi_d, Fdj_d)); 9960e3ece09SJunchao Zhang PetscCallCXX(mm->Fo = KokkosCsrMatrix("Fo", Fm, n2, Fonz, Foa_d, Foi_d, Foj_d)); 9970e3ece09SJunchao Zhang 9980e3ece09SJunchao Zhang // Compute kernel launch parameters in merging E or splitting F 9990e3ece09SJunchao Zhang PetscInt teamSize, vectorLength, rowsPerTeam; 10000e3ece09SJunchao Zhang 10010e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 10020e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(mm->irootloc.extent(0), mm->rootBuf.extent(0), -1, teamSize, vectorLength, rowsPerTeam)); 10030e3ece09SJunchao Zhang mm->E_TeamSize = teamSize; 10040e3ece09SJunchao Zhang mm->E_VectorLength = vectorLength; 10050e3ece09SJunchao Zhang mm->E_RowsPerTeam = rowsPerTeam; 10060e3ece09SJunchao Zhang 10070e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 10080e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(Fm, Fnz, -1, teamSize, vectorLength, rowsPerTeam)); 10090e3ece09SJunchao Zhang mm->F_TeamSize = teamSize; 10100e3ece09SJunchao Zhang mm->F_VectorLength = vectorLength; 10110e3ece09SJunchao Zhang mm->F_RowsPerTeam = rowsPerTeam; 10120e3ece09SJunchao Zhang } else PetscCheck(reuse == MAT_REUSE_MATRIX, comm, PETSC_ERR_PLIB, "Unsupported MatReuse enum %d", reuse); 10130e3ece09SJunchao Zhang 10140e3ece09SJunchao Zhang // Sync E's value to device 10150e3ece09SJunchao Zhang akok->a_dual.sync_device(); 10160e3ece09SJunchao Zhang bkok->a_dual.sync_device(); 10170e3ece09SJunchao Zhang 10180e3ece09SJunchao Zhang // Handy aliases 10190e3ece09SJunchao Zhang const auto &Aa = akok->a_dual.view_device(); 10200e3ece09SJunchao Zhang const auto &Ba = bkok->a_dual.view_device(); 10210e3ece09SJunchao Zhang const auto &Ai = akok->i_dual.view_device(); 10220e3ece09SJunchao Zhang const auto &Bi = bkok->i_dual.view_device(); 10230e3ece09SJunchao Zhang 10240e3ece09SJunchao Zhang // Fetch the plans 10250e3ece09SJunchao Zhang PetscIntKokkosView &E_NzLeft = mm->E_NzLeft; 10260e3ece09SJunchao Zhang PetscSF &bcastSF = mm->sf; 10270e3ece09SJunchao Zhang MatScalarKokkosView &rootBuf = mm->rootBuf; 10280e3ece09SJunchao Zhang MatScalarKokkosView &leafBuf = mm->leafBuf; 10290e3ece09SJunchao Zhang PetscIntKokkosView &irootloc = mm->irootloc; 10300e3ece09SJunchao Zhang PetscIntKokkosView &rowoffset = mm->rowoffset; 10310e3ece09SJunchao Zhang 10320e3ece09SJunchao Zhang PetscInt teamSize = mm->E_TeamSize; 10330e3ece09SJunchao Zhang PetscInt vectorLength = mm->E_VectorLength; 10340e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->E_RowsPerTeam; 10350e3ece09SJunchao Zhang PetscInt workSets = (irootloc.extent(0) + rowsPerTeam - 1) / rowsPerTeam; 10360e3ece09SJunchao Zhang 10370e3ece09SJunchao Zhang // Copy rows in A/B of E to rootBuf, then bcast it to leafBuf 10380e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 10390e3ece09SJunchao Zhang Kokkos::TeamPolicy<>(workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 10400e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 10410e3ece09SJunchao Zhang size_t r = t.league_rank() * rowsPerTeam + k; // r-th entry in irootloc[] 10420e3ece09SJunchao Zhang if (r < irootloc.extent(0)) { 10430e3ece09SJunchao Zhang PetscInt i = irootloc(r); // row i of E 10440e3ece09SJunchao Zhang PetscInt disp = rowoffset(r); 10450e3ece09SJunchao Zhang PetscInt alen = Ai(i + 1) - Ai(i); 10460e3ece09SJunchao Zhang PetscInt blen = Bi(i + 1) - Bi(i); 10470e3ece09SJunchao Zhang PetscInt nzleft = E_NzLeft(i); 10480e3ece09SJunchao Zhang 10490e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 10500e3ece09SJunchao Zhang if (j < nzleft) { // B left 10510e3ece09SJunchao Zhang rootBuf(disp + j) = Ba(Bi(i) + j); 10520e3ece09SJunchao Zhang } else if (j < nzleft + alen) { // diag A 10530e3ece09SJunchao Zhang rootBuf(disp + j) = Aa(Ai(i) + j - nzleft); 10540e3ece09SJunchao Zhang } else { // B right 10550e3ece09SJunchao Zhang rootBuf(disp + j) = Ba(Bi(i) + j - alen); 10560e3ece09SJunchao Zhang } 10570e3ece09SJunchao Zhang }); 10580e3ece09SJunchao Zhang } 10590e3ece09SJunchao Zhang }); 10600e3ece09SJunchao Zhang })); 10610e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(bcastSF, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, rootBuf.data(), PETSC_MEMTYPE_KOKKOS, leafBuf.data(), MPI_REPLACE)); 10620e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 10630e3ece09SJunchao Zhang } 10640e3ece09SJunchao Zhang 10650e3ece09SJunchao Zhang // To finish MatMPIAIJKokkosBcast. 10660e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosBcastEnd(Mat E, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AB *mm) 10670e3ece09SJunchao Zhang { 10680e3ece09SJunchao Zhang PetscFunctionBegin; 10690e3ece09SJunchao Zhang const auto &Fd = mm->Fd; 10700e3ece09SJunchao Zhang const auto &Fo = mm->Fo; 10710e3ece09SJunchao Zhang const auto &Fdi = Fd.graph.row_map; 10720e3ece09SJunchao Zhang const auto &Foi = Fo.graph.row_map; 10730e3ece09SJunchao Zhang auto &Fda = Fd.values; 10740e3ece09SJunchao Zhang auto &Foa = Fo.values; 10750e3ece09SJunchao Zhang auto Fm = Fd.numRows(); 10760e3ece09SJunchao Zhang 10770e3ece09SJunchao Zhang PetscIntKokkosView &F_NzLeft = mm->F_NzLeft; 10780e3ece09SJunchao Zhang PetscSF &bcastSF = mm->sf; 10790e3ece09SJunchao Zhang MatScalarKokkosView &rootBuf = mm->rootBuf; 10800e3ece09SJunchao Zhang MatScalarKokkosView &leafBuf = mm->leafBuf; 10810e3ece09SJunchao Zhang PetscInt teamSize = mm->F_TeamSize; 10820e3ece09SJunchao Zhang PetscInt vectorLength = mm->F_VectorLength; 10830e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->F_RowsPerTeam; 10840e3ece09SJunchao Zhang PetscInt workSets = (Fm + rowsPerTeam - 1) / rowsPerTeam; 10850e3ece09SJunchao Zhang 10860e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(bcastSF, MPIU_SCALAR, rootBuf.data(), leafBuf.data(), MPI_REPLACE)); 10870e3ece09SJunchao Zhang 10880e3ece09SJunchao Zhang // Update Fda and Foa with new data in leafBuf (as if it is Fa) 10890e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 10900e3ece09SJunchao Zhang Kokkos::TeamPolicy<>(workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 10910e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 10920e3ece09SJunchao Zhang PetscInt i = t.league_rank() * rowsPerTeam + k; // i-th row in F 10930e3ece09SJunchao Zhang if (i < Fm) { 10940e3ece09SJunchao Zhang PetscInt nzLeft = F_NzLeft(i); 10950e3ece09SJunchao Zhang PetscInt alen = Fdi(i + 1) - Fdi(i); 10960e3ece09SJunchao Zhang PetscInt blen = Foi(i + 1) - Foi(i); 10970e3ece09SJunchao Zhang PetscInt Fii = Fdi(i) + Foi(i); 10980e3ece09SJunchao Zhang 10990e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 11000e3ece09SJunchao Zhang PetscScalar val = leafBuf(Fii + j); 11010e3ece09SJunchao Zhang if (j < nzLeft) { // left 11020e3ece09SJunchao Zhang Foa(Foi(i) + j) = val; 11030e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { // diag 11040e3ece09SJunchao Zhang Fda(Fdi(i) + j - nzLeft) = val; 11050e3ece09SJunchao Zhang } else { // right 11060e3ece09SJunchao Zhang Foa(Foi(i) + j - alen) = val; 11070e3ece09SJunchao Zhang } 11080e3ece09SJunchao Zhang }); 11090e3ece09SJunchao Zhang } 11100e3ece09SJunchao Zhang }); 11110e3ece09SJunchao Zhang })); 11120e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 11130e3ece09SJunchao Zhang } 11140e3ece09SJunchao Zhang 11150e3ece09SJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AtB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AtB *mm) 11160e3ece09SJunchao Zhang { 11170e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 11180e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 11190e3ece09SJunchao Zhang KokkosCsrMatrix Adt, Aot, Ad, Ao, Bd, Bo; 11200e3ece09SJunchao Zhang PetscInt cstart, cend; 11210e3ece09SJunchao Zhang MPI_Comm comm; 11220e3ece09SJunchao Zhang 11230e3ece09SJunchao Zhang PetscFunctionBegin; 11240e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 11250e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->A, &Adt)); 11260e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->B, &Aot)); 11270e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 11280e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 11290e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 11300e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 11310e3ece09SJunchao Zhang 11320e3ece09SJunchao Zhang // TODO: add command line options to select spgemm algorithms 11330e3ece09SJunchao Zhang auto spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_DEFAULT; // default is TPL if enabled, otherwise KK 11340e3ece09SJunchao Zhang 11350e3ece09SJunchao Zhang // CUDA-10.2's spgemm has bugs. We prefer the SpGEMMreuse APIs introduced in cuda-11.4 11360e3ece09SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 11370e3ece09SJunchao Zhang #if PETSC_PKG_CUDA_VERSION_LT(11, 4, 0) 11380e3ece09SJunchao Zhang spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_KK; 1139f0e6e2d1SJunchao Zhang #endif 11400e3ece09SJunchao Zhang #endif 11410e3ece09SJunchao Zhang 11420e3ece09SJunchao Zhang PetscCallCXX(mm->kh1.create_spgemm_handle(spgemm_alg)); 11430e3ece09SJunchao Zhang PetscCallCXX(mm->kh2.create_spgemm_handle(spgemm_alg)); 11440e3ece09SJunchao Zhang PetscCallCXX(mm->kh3.create_spgemm_handle(spgemm_alg)); 11450e3ece09SJunchao Zhang PetscCallCXX(mm->kh4.create_spgemm_handle(spgemm_alg)); 11460e3ece09SJunchao Zhang 11470e3ece09SJunchao Zhang // Aot * (B's diag + B's off-diag) 11480e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh3, Aot, false, Bd, false, mm->C3)); 11490e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh4, Aot, false, Bo, false, mm->C4)); 11500e3ece09SJunchao Zhang // KK spgemm_symbolic() only populates the result's row map, but not its columns. 11510e3ece09SJunchao Zhang // TODO: Remove the fake spgemm_numeric() after KK fixed this problem. 11520e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Aot, false, Bd, false, mm->C3)); 11530e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Aot, false, Bo, false, mm->C4)); 11540e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 11550e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C3)); 11560e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C4)); 11570e3ece09SJunchao Zhang #endif 11580e3ece09SJunchao Zhang 11590e3ece09SJunchao Zhang // Reduce E (i.e., C3 and C4)'s rows to form F, and overlap the communication 11607b8d4ba6SJunchao Zhang PetscIntKokkosViewHost map_h(NoInit("map_h"), bmpi->B->cmap->n); 11610e3ece09SJunchao Zhang PetscCall(MatGetOwnershipRangeColumn(B, &cstart, &cend)); 11620e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceBegin(comm, mm->C3, mm->C4, cstart, cend, bmpi->garray, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 11630e3ece09SJunchao Zhang 11640e3ece09SJunchao Zhang // Adt * (B's diag + B's off-diag) 11650e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh1, Adt, false, Bd, false, mm->C1)); 11660e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 11670e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Adt, false, Bd, false, mm->C1)); 11680e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 11690e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 11700e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C1)); 11710e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C2_mid)); 11720e3ece09SJunchao Zhang #endif 11730e3ece09SJunchao Zhang 11740e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceEnd(comm, mm->C3, mm->C4, cstart, cend, bmpi->garray, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 11750e3ece09SJunchao Zhang 11760e3ece09SJunchao Zhang // Create C2, which shares a, i arrays with C2_mid, but with new column indices and potentially larger column size 11777b8d4ba6SJunchao Zhang MatColIdxKokkosView oldj = mm->C2_mid.graph.entries, newj(NoInit("j"), oldj.extent(0)); 11780e3ece09SJunchao Zhang PetscIntKokkosView map = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), map_h); 11790e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 11800e3ece09SJunchao Zhang oldj.extent(0), KOKKOS_LAMBDA(const PetscInt i) { newj(i) = map(oldj(i)); })); 11810e3ece09SJunchao Zhang PetscCallCXX(mm->C2 = KokkosCsrMatrix("C2", mm->C2_mid.numRows(), mm->n /*new column size*/, mm->C2_mid.nnz(), mm->C2_mid.values, mm->C2_mid.graph.row_map, newj)); 11820e3ece09SJunchao Zhang 11830e3ece09SJunchao Zhang // C = (C1+Fd, C2+Fo) 11840e3ece09SJunchao Zhang PetscCallCXX(mm->kh1.create_spadd_handle(true)); // C1, Fd are sorted 11850e3ece09SJunchao Zhang PetscCallCXX(mm->kh2.create_spadd_handle(true)); // C2, Fo are sorted 11860e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh1, mm->C1, mm->Fd, mm->Cd)); 11870e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh2, mm->C2, mm->Fo, mm->Co)); 11880e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->Fd, mm->Cd)); 11890e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->Fo, mm->Co)); 11900e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 11910e3ece09SJunchao Zhang } 11920e3ece09SJunchao Zhang 11930e3ece09SJunchao Zhang static PetscErrorCode MatProductNumeric_MPIAIJKokkos_AtB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AtB *mm) 11940e3ece09SJunchao Zhang { 11950e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 11960e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 11970e3ece09SJunchao Zhang KokkosCsrMatrix Adt, Aot, Bd, Bo; 11980e3ece09SJunchao Zhang MPI_Comm comm; 11990e3ece09SJunchao Zhang 12000e3ece09SJunchao Zhang PetscFunctionBegin; 12010e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 12020e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->A, &Adt)); 12030e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->B, &Aot)); 12040e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 12050e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 12060e3ece09SJunchao Zhang 12070e3ece09SJunchao Zhang // Aot * (B's diag + B's off-diag) 12080e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Aot, false, Bd, false, mm->C3)); 12090e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Aot, false, Bo, false, mm->C4)); 12100e3ece09SJunchao Zhang 12110e3ece09SJunchao Zhang // Reduce E (i.e., C3 and C4)'s rows to form F, and overlap the communication 12120e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceBegin(comm, mm->C3, mm->C4, 0, 0, NULL, NULL, MAT_REUSE_MATRIX, NULL, mm)); 12130e3ece09SJunchao Zhang 12140e3ece09SJunchao Zhang // Adt * (B's diag + B's off-diag) 12150e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Adt, false, Bd, false, mm->C1)); 12160e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 12170e3ece09SJunchao Zhang 12180e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceEnd(comm, mm->C3, mm->C4, 0, 0, NULL, NULL, MAT_REUSE_MATRIX, NULL, mm)); 12190e3ece09SJunchao Zhang 12200e3ece09SJunchao Zhang // C = (C1+Fd, C2+Fo) 12210e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->Fd, mm->Cd)); 12220e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->Fo, mm->Co)); 12230e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 12240e3ece09SJunchao Zhang } 1225f0e6e2d1SJunchao Zhang 1226076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AB - AB flavor of MatProductSymbolic_MPIAIJKokkos 1227076ba34aSJunchao Zhang 1228076ba34aSJunchao Zhang Input Parameters: 1229076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 1230076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 1231076ba34aSJunchao Zhang . B - an MPIAIJKOKKOS matrix 1232076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data when computing AB. Persist from symbolic to numeric operations. 1233076ba34aSJunchao Zhang */ 1234d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AB *mm) 1235d71ae5a4SJacob Faibussowitsch { 12360e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 12370e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 12380e3ece09SJunchao Zhang KokkosCsrMatrix Ad, Ao, Bd, Bo; 1239076ba34aSJunchao Zhang 1240076ba34aSJunchao Zhang PetscFunctionBegin; 12410e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 12420e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 12430e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 12440e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 12450e3ece09SJunchao Zhang 12460e3ece09SJunchao Zhang // TODO: add command line options to select spgemm algorithms 12470e3ece09SJunchao Zhang auto spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_DEFAULT; // default is TPL if enabled, otherwise KK 12480e3ece09SJunchao Zhang 12490e3ece09SJunchao Zhang // CUDA-10.2's spgemm has bugs. We prefer the SpGEMMreuse APIs introduced in cuda-11.4 12500e3ece09SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 12510e3ece09SJunchao Zhang #if PETSC_PKG_CUDA_VERSION_LT(11, 4, 0) 12520e3ece09SJunchao Zhang spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_KK; 12530e3ece09SJunchao Zhang #endif 1254f0e6e2d1SJunchao Zhang #endif 1255f0e6e2d1SJunchao Zhang 12560e3ece09SJunchao Zhang mm->kh1.create_spgemm_handle(spgemm_alg); 12570e3ece09SJunchao Zhang mm->kh2.create_spgemm_handle(spgemm_alg); 12580e3ece09SJunchao Zhang mm->kh3.create_spgemm_handle(spgemm_alg); 12590e3ece09SJunchao Zhang mm->kh4.create_spgemm_handle(spgemm_alg); 1260076ba34aSJunchao Zhang 12610e3ece09SJunchao Zhang // Bcast B's rows to form F, and overlap the communication 12627b8d4ba6SJunchao Zhang PetscIntKokkosViewHost map_h(NoInit("map_h"), bmpi->B->cmap->n); 12630e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastBegin(B, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1264076ba34aSJunchao Zhang 12650e3ece09SJunchao Zhang // A's diag * (B's diag + B's off-diag) 12660e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh1, Ad, false, Bd, false, mm->C1)); 12670e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); // C2 aliases with C2_mid, except with new column indices 12680e3ece09SJunchao Zhang // KK spgemm_symbolic() only populates the result's row map, but not its columns. 12690e3ece09SJunchao Zhang // TODO: Remove the fake spgemm_numeric() after KK fixed this problem. 12700e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Ad, false, Bd, false, mm->C1)); 12710e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); 12720e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 12730e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C1)); 12740e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C2_mid)); 12750e3ece09SJunchao Zhang #endif 1276076ba34aSJunchao Zhang 12770e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastEnd(B, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1278076ba34aSJunchao Zhang 12790e3ece09SJunchao Zhang // A's off-diag * (F's diag + F's off-diag) 12800e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 12810e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 12820e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 12830e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 12840e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 12850e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C3)); 12860e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C4)); 12870e3ece09SJunchao Zhang #endif 1288076ba34aSJunchao Zhang 12890e3ece09SJunchao Zhang // Create C2, which shares a, i arrays with C2_mid, but with new column indices and potentially larger column size 12907b8d4ba6SJunchao Zhang MatColIdxKokkosView oldj = mm->C2_mid.graph.entries, newj(NoInit("j"), oldj.extent(0)); 12910e3ece09SJunchao Zhang PetscIntKokkosView map = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), map_h); 12920e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 12930e3ece09SJunchao Zhang oldj.extent(0), KOKKOS_LAMBDA(const PetscInt i) { newj(i) = map(oldj(i)); })); 12940e3ece09SJunchao Zhang mm->C2 = KokkosCsrMatrix("C2", mm->C2_mid.numRows(), mm->n /*new column size*/, mm->C2_mid.nnz(), mm->C2_mid.values, mm->C2_mid.graph.row_map, newj); 12950e3ece09SJunchao Zhang 12960e3ece09SJunchao Zhang // C = (Cd, Co) = (C1+C3, C2+C4) 12970e3ece09SJunchao Zhang mm->kh1.create_spadd_handle(true); // C1, C3 are sorted 12980e3ece09SJunchao Zhang mm->kh2.create_spadd_handle(true); // C2, C4 are sorted 12990e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh1, mm->C1, mm->C3, mm->Cd)); 13000e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh2, mm->C2, mm->C4, mm->Co)); 13010e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->C3, mm->Cd)); 13020e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->C4, mm->Co)); 13033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1304076ba34aSJunchao Zhang } 1305076ba34aSJunchao Zhang 13060e3ece09SJunchao Zhang static PetscErrorCode MatProductNumeric_MPIAIJKokkos_AB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AB *mm) 1307d71ae5a4SJacob Faibussowitsch { 13080e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 13090e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 13100e3ece09SJunchao Zhang KokkosCsrMatrix Ad, Ao, Bd, Bo; 1311076ba34aSJunchao Zhang 1312076ba34aSJunchao Zhang PetscFunctionBegin; 13130e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 13140e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 13150e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 13160e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 1317076ba34aSJunchao Zhang 13180e3ece09SJunchao Zhang // Bcast B's rows to form F, and overlap the communication 13190e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastBegin(B, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1320076ba34aSJunchao Zhang 13210e3ece09SJunchao Zhang // A's diag * (B's diag + B's off-diag) 13220e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Ad, false, Bd, false, mm->C1)); 13230e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); 1324076ba34aSJunchao Zhang 13250e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastEnd(B, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1326076ba34aSJunchao Zhang 13270e3ece09SJunchao Zhang // A's off-diag * (F's diag + F's off-diag) 13280e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 13290e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 13300e3ece09SJunchao Zhang 13310e3ece09SJunchao Zhang // C = (Cd, Co) = (C1+C3, C2+C4) 13320e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->C3, mm->Cd)); 13330e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->C4, mm->Co)); 13343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1335076ba34aSJunchao Zhang } 1336076ba34aSJunchao Zhang 1337d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductNumeric_MPIAIJKokkos(Mat C) 1338d71ae5a4SJacob Faibussowitsch { 13390e3ece09SJunchao Zhang Mat_MPIAIJ *cmpi = static_cast<Mat_MPIAIJ *>(C->data); 13400e3ece09SJunchao Zhang Mat_Product *product; 13410e3ece09SJunchao Zhang MatProductData_MPIAIJKokkos *pdata; 1342076ba34aSJunchao Zhang MatProductType ptype; 13430e3ece09SJunchao Zhang Mat A, B; 1344076ba34aSJunchao Zhang 1345076ba34aSJunchao Zhang PetscFunctionBegin; 13460e3ece09SJunchao Zhang MatCheckProduct(C, 1); // make sure C is a product 13470e3ece09SJunchao Zhang product = C->product; 13480e3ece09SJunchao Zhang pdata = static_cast<MatProductData_MPIAIJKokkos *>(product->data); 1349076ba34aSJunchao Zhang ptype = product->type; 1350076ba34aSJunchao Zhang A = product->A; 1351076ba34aSJunchao Zhang B = product->B; 1352076ba34aSJunchao Zhang 13530e3ece09SJunchao Zhang // See if numeric has already been done in symbolic (e.g., user calls MatMatMult(A,B,MAT_INITIAL_MATRIX,..,C)). 13540e3ece09SJunchao Zhang // If yes, skip the numeric, but reset the flag so that next time when user calls MatMatMult(E,F,MAT_REUSE_MATRIX,..,C), 13550e3ece09SJunchao Zhang // we still do numeric. 13560e3ece09SJunchao Zhang if (pdata->reusesym) { // numeric reuses results from symbolic 13570e3ece09SJunchao Zhang pdata->reusesym = PETSC_FALSE; 13583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1359076ba34aSJunchao Zhang } 1360076ba34aSJunchao Zhang 1361076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 13620e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AB(product, A, B, pdata->mmAB)); 1363076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 13640e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AtB(product, A, B, pdata->mmAtB)); 13650e3ece09SJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { // BtAB, computed by Z = AB; C= BtZ 13660e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AB(product, A, B, pdata->mmAB)); 13670e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AtB(product, B, pdata->Z, pdata->mmAtB)); 1368076ba34aSJunchao Zhang } 13690e3ece09SJunchao Zhang 13700e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(cmpi->A)); // mark that A, B on device are modified 13710e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(cmpi->B)); 13723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1373076ba34aSJunchao Zhang } 1374076ba34aSJunchao Zhang 1375d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJKokkos(Mat C) 1376d71ae5a4SJacob Faibussowitsch { 1377076ba34aSJunchao Zhang Mat A, B; 13780e3ece09SJunchao Zhang Mat_Product *product; 1379076ba34aSJunchao Zhang MatProductType ptype; 13800e3ece09SJunchao Zhang MatProductData_MPIAIJKokkos *pdata; 1381076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 13820e3ece09SJunchao Zhang PetscInt m, n, M, N; 13830e3ece09SJunchao Zhang Mat Cd, Co; 13840e3ece09SJunchao Zhang MPI_Comm comm; 1385076ba34aSJunchao Zhang 1386076ba34aSJunchao Zhang PetscFunctionBegin; 13870e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 1388076ba34aSJunchao Zhang MatCheckProduct(C, 1); 13890e3ece09SJunchao Zhang product = C->product; 13900e3ece09SJunchao Zhang PetscCheck(!product->data, comm, PETSC_ERR_PLIB, "Product data not empty"); 1391076ba34aSJunchao Zhang ptype = product->type; 1392076ba34aSJunchao Zhang A = product->A; 1393076ba34aSJunchao Zhang B = product->B; 1394076ba34aSJunchao Zhang 1395076ba34aSJunchao Zhang switch (ptype) { 13969371c9d4SSatish Balay case MATPRODUCT_AB: 13979371c9d4SSatish Balay m = A->rmap->n; 13989371c9d4SSatish Balay n = B->cmap->n; 13999371c9d4SSatish Balay M = A->rmap->N; 14009371c9d4SSatish Balay N = B->cmap->N; 14019371c9d4SSatish Balay break; 14029371c9d4SSatish Balay case MATPRODUCT_AtB: 14039371c9d4SSatish Balay m = A->cmap->n; 14049371c9d4SSatish Balay n = B->cmap->n; 14059371c9d4SSatish Balay M = A->cmap->N; 14069371c9d4SSatish Balay N = B->cmap->N; 14079371c9d4SSatish Balay break; 14089371c9d4SSatish Balay case MATPRODUCT_PtAP: 14099371c9d4SSatish Balay m = B->cmap->n; 14109371c9d4SSatish Balay n = B->cmap->n; 14119371c9d4SSatish Balay M = B->cmap->N; 14129371c9d4SSatish Balay N = B->cmap->N; 14139371c9d4SSatish Balay break; /* BtAB */ 1414d71ae5a4SJacob Faibussowitsch default: 14150e3ece09SJunchao Zhang SETERRQ(comm, PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 1416076ba34aSJunchao Zhang } 1417076ba34aSJunchao Zhang 14189566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 14199566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 14209566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 14219566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 1422076ba34aSJunchao Zhang 14230e3ece09SJunchao Zhang pdata = new MatProductData_MPIAIJKokkos(); 14240e3ece09SJunchao Zhang pdata->reusesym = product->api_user; 1425076ba34aSJunchao Zhang 1426076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 14270e3ece09SJunchao Zhang auto mmAB = new MatMatStruct_AB(); 14280e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AB(product, A, B, mmAB)); 14290e3ece09SJunchao Zhang mm = pdata->mmAB = mmAB; 1430076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 14310e3ece09SJunchao Zhang auto mmAtB = new MatMatStruct_AtB(); 14320e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AtB(product, A, B, mmAtB)); 14330e3ece09SJunchao Zhang mm = pdata->mmAtB = mmAtB; 14340e3ece09SJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { // C = BtAB, computed as Z = AB; C= BtZ 14350e3ece09SJunchao Zhang Mat Zd, Zo, Z; // Zd, Zo are owned by pdata->Z 14360e3ece09SJunchao Zhang 14370e3ece09SJunchao Zhang auto mmAB = new MatMatStruct_AB(); 14380e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AB(product, A, B, mmAB)); // Z stored as mmAB->{Cd, Co} 14390e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mmAB->Cd, &Zd)); 14400e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mmAB->Co, &Zo)); 14410e3ece09SJunchao Zhang pdata->mmAB = mmAB; 14420e3ece09SJunchao Zhang 14430e3ece09SJunchao Zhang m = A->rmap->n; // Z's layout 14440e3ece09SJunchao Zhang n = B->cmap->n; 14450e3ece09SJunchao Zhang M = A->rmap->N; 14460e3ece09SJunchao Zhang N = B->cmap->N; 14470e3ece09SJunchao Zhang PetscCall(MatCreate(comm, &Z)); 14480e3ece09SJunchao Zhang PetscCall(MatSetSizes(Z, m, n, M, N)); 14490e3ece09SJunchao Zhang PetscCall(PetscLayoutSetUp(Z->rmap)); 14500e3ece09SJunchao Zhang PetscCall(PetscLayoutSetUp(Z->cmap)); 14510e3ece09SJunchao Zhang PetscCall(MatSetType(Z, MATMPIAIJKOKKOS)); 14520e3ece09SJunchao Zhang PetscCall(MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Z, Zd, Zo, mmAB->garray)); 14530e3ece09SJunchao Zhang 14540e3ece09SJunchao Zhang auto mmAtB = new MatMatStruct_AtB(); 14550e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AtB(product, B, Z, mmAtB)); // final result C stored as mmAtB->{Cd, Co} 14560e3ece09SJunchao Zhang 14570e3ece09SJunchao Zhang pdata->Z = Z; // give ownership to pdata 14580e3ece09SJunchao Zhang mm = pdata->mmAtB = mmAtB; 1459076ba34aSJunchao Zhang } 14600e3ece09SJunchao Zhang 14610e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mm->Cd, &Cd)); 14620e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mm->Co, &Co)); 14630e3ece09SJunchao Zhang PetscCall(MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(C, Cd, Co, mm->garray)); 14640e3ece09SJunchao Zhang 14650e3ece09SJunchao Zhang C->product->data = pdata; 1466076ba34aSJunchao Zhang C->product->destroy = MatProductDataDestroy_MPIAIJKokkos; 1467076ba34aSJunchao Zhang C->ops->productnumeric = MatProductNumeric_MPIAIJKokkos; 14683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1469076ba34aSJunchao Zhang } 1470076ba34aSJunchao Zhang 1471d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJKokkos(Mat mat) 1472d71ae5a4SJacob Faibussowitsch { 1473076ba34aSJunchao Zhang Mat_Product *product = mat->product; 1474076ba34aSJunchao Zhang PetscBool match = PETSC_FALSE; 1475076ba34aSJunchao Zhang PetscBool usecpu = PETSC_FALSE; 1476076ba34aSJunchao Zhang 1477076ba34aSJunchao Zhang PetscFunctionBegin; 1478076ba34aSJunchao Zhang MatCheckProduct(mat, 1); 147948a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 1480076ba34aSJunchao Zhang if (match) { /* we can always fallback to the CPU if requested */ 1481076ba34aSJunchao Zhang switch (product->type) { 1482076ba34aSJunchao Zhang case MATPRODUCT_AB: 1483076ba34aSJunchao Zhang if (product->api_user) { 1484d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 14859566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 1486d0609cedSBarry Smith PetscOptionsEnd(); 1487076ba34aSJunchao Zhang } else { 1488d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 14899566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 1490d0609cedSBarry Smith PetscOptionsEnd(); 1491076ba34aSJunchao Zhang } 1492076ba34aSJunchao Zhang break; 1493076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1494076ba34aSJunchao Zhang if (product->api_user) { 1495d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 14969566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 1497d0609cedSBarry Smith PetscOptionsEnd(); 1498076ba34aSJunchao Zhang } else { 1499d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 15009566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 1501d0609cedSBarry Smith PetscOptionsEnd(); 1502076ba34aSJunchao Zhang } 1503076ba34aSJunchao Zhang break; 1504076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1505076ba34aSJunchao Zhang if (product->api_user) { 1506d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 15079566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 1508d0609cedSBarry Smith PetscOptionsEnd(); 1509076ba34aSJunchao Zhang } else { 1510d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 15119566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 1512d0609cedSBarry Smith PetscOptionsEnd(); 1513076ba34aSJunchao Zhang } 1514076ba34aSJunchao Zhang break; 1515d71ae5a4SJacob Faibussowitsch default: 1516d71ae5a4SJacob Faibussowitsch break; 1517076ba34aSJunchao Zhang } 1518076ba34aSJunchao Zhang match = (PetscBool)!usecpu; 1519076ba34aSJunchao Zhang } 1520076ba34aSJunchao Zhang if (match) { 1521076ba34aSJunchao Zhang switch (product->type) { 1522076ba34aSJunchao Zhang case MATPRODUCT_AB: 1523076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1524d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 1525d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJKokkos; 1526d71ae5a4SJacob Faibussowitsch break; 1527d71ae5a4SJacob Faibussowitsch default: 1528d71ae5a4SJacob Faibussowitsch break; 1529076ba34aSJunchao Zhang } 1530076ba34aSJunchao Zhang } 1531076ba34aSJunchao Zhang /* fallback to MPIAIJ ops */ 153248a46eb9SPierre Jolivet if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 15333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1534076ba34aSJunchao Zhang } 1535076ba34aSJunchao Zhang 1536*2c4ab24aSJunchao Zhang // Mirror of MatCOOStruct_MPIAIJ on device 1537*2c4ab24aSJunchao Zhang struct MatCOOStruct_MPIAIJKokkos { 1538*2c4ab24aSJunchao Zhang PetscCount n; 1539*2c4ab24aSJunchao Zhang PetscSF sf; 1540*2c4ab24aSJunchao Zhang PetscCount Annz, Bnnz; 1541*2c4ab24aSJunchao Zhang PetscCount Annz2, Bnnz2; 1542*2c4ab24aSJunchao Zhang PetscCountKokkosView Ajmap1, Aperm1; 1543*2c4ab24aSJunchao Zhang PetscCountKokkosView Bjmap1, Bperm1; 1544*2c4ab24aSJunchao Zhang PetscCountKokkosView Aimap2, Ajmap2, Aperm2; 1545*2c4ab24aSJunchao Zhang PetscCountKokkosView Bimap2, Bjmap2, Bperm2; 1546*2c4ab24aSJunchao Zhang PetscCountKokkosView Cperm1; 1547*2c4ab24aSJunchao Zhang MatScalarKokkosView sendbuf, recvbuf; 1548*2c4ab24aSJunchao Zhang 1549*2c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJKokkos(const MatCOOStruct_MPIAIJ *coo_h) : 1550*2c4ab24aSJunchao Zhang n(coo_h->n), 1551*2c4ab24aSJunchao Zhang sf(coo_h->sf), 1552*2c4ab24aSJunchao Zhang Annz(coo_h->Annz), 1553*2c4ab24aSJunchao Zhang Bnnz(coo_h->Bnnz), 1554*2c4ab24aSJunchao Zhang Annz2(coo_h->Annz2), 1555*2c4ab24aSJunchao Zhang Bnnz2(coo_h->Bnnz2), 1556*2c4ab24aSJunchao Zhang Ajmap1(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Ajmap1, coo_h->Annz + 1))), 1557*2c4ab24aSJunchao Zhang Aperm1(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Aperm1, coo_h->Atot1))), 1558*2c4ab24aSJunchao Zhang Bjmap1(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Bjmap1, coo_h->Bnnz + 1))), 1559*2c4ab24aSJunchao Zhang Bperm1(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Bperm1, coo_h->Btot1))), 1560*2c4ab24aSJunchao Zhang Aimap2(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Aimap2, coo_h->Annz2))), 1561*2c4ab24aSJunchao Zhang Ajmap2(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Ajmap2, coo_h->Annz2 + 1))), 1562*2c4ab24aSJunchao Zhang Aperm2(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Aperm2, coo_h->Atot2))), 1563*2c4ab24aSJunchao Zhang Bimap2(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Bimap2, coo_h->Bnnz2))), 1564*2c4ab24aSJunchao Zhang Bjmap2(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Bjmap2, coo_h->Bnnz2 + 1))), 1565*2c4ab24aSJunchao Zhang Bperm2(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Bperm2, coo_h->Btot2))), 1566*2c4ab24aSJunchao Zhang Cperm1(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Cperm1, coo_h->sendlen))), 1567*2c4ab24aSJunchao Zhang sendbuf(Kokkos::create_mirror_view(DefaultMemorySpace(), MatScalarKokkosViewHost(coo_h->sendbuf, coo_h->sendlen))), 1568*2c4ab24aSJunchao Zhang recvbuf(Kokkos::create_mirror_view(DefaultMemorySpace(), MatScalarKokkosViewHost(coo_h->recvbuf, coo_h->recvlen))) 1569*2c4ab24aSJunchao Zhang { 1570*2c4ab24aSJunchao Zhang PetscCallVoid(PetscObjectReference((PetscObject)sf)); 1571*2c4ab24aSJunchao Zhang } 1572*2c4ab24aSJunchao Zhang 1573*2c4ab24aSJunchao Zhang ~MatCOOStruct_MPIAIJKokkos() { PetscCallVoid(PetscSFDestroy(&sf)); } 1574*2c4ab24aSJunchao Zhang }; 1575*2c4ab24aSJunchao Zhang 1576*2c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJKokkos(void *data) 1577*2c4ab24aSJunchao Zhang { 1578*2c4ab24aSJunchao Zhang PetscFunctionBegin; 1579*2c4ab24aSJunchao Zhang PetscCallCXX(delete static_cast<MatCOOStruct_MPIAIJKokkos *>(data)); 1580*2c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 1581*2c4ab24aSJunchao Zhang } 1582*2c4ab24aSJunchao Zhang 1583d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetPreallocationCOO_MPIAIJKokkos(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 1584d71ae5a4SJacob Faibussowitsch { 1585*2c4ab24aSJunchao Zhang PetscContainer container_h, container_d; 1586*2c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo_h; 1587*2c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJKokkos *coo_d; 158842550becSJunchao Zhang 158942550becSJunchao Zhang PetscFunctionBegin; 159030203840SJunchao Zhang PetscCall(MatSetPreallocationCOO_MPIAIJ(mat, coo_n, coo_i, coo_j)); /* mpiaij->A,B's type is set to seqaijkokkos */ 1591cbc6b225SStefano Zampini mat->preallocated = PETSC_TRUE; 15929566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 15939566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 15949566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat)); 1595*2c4ab24aSJunchao Zhang 1596*2c4ab24aSJunchao Zhang // Copy the COO struct to device 1597*2c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container_h)); 1598*2c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container_h, (void **)&coo_h)); 1599*2c4ab24aSJunchao Zhang PetscCallCXX(coo_d = new MatCOOStruct_MPIAIJKokkos(coo_h)); 1600*2c4ab24aSJunchao Zhang 1601*2c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 1602*2c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container_d)); 1603*2c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container_d, coo_d)); 1604*2c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container_d, MatCOOStructDestroy_MPIAIJKokkos)); 1605*2c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Device", (PetscObject)container_d)); 1606*2c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container_d)); 16073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 160842550becSJunchao Zhang } 160942550becSJunchao Zhang 1610d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJKokkos(Mat mat, const PetscScalar v[], InsertMode imode) 1611d71ae5a4SJacob Faibussowitsch { 1612394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 161342550becSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 161442550becSJunchao Zhang MatScalarKokkosView Aa, Ba; 1615394ed5ebSJunchao Zhang MatScalarKokkosView v1; 161642550becSJunchao Zhang PetscMemType memtype; 1617*2c4ab24aSJunchao Zhang PetscContainer container; 1618*2c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJKokkos *coo; 161942550becSJunchao Zhang 162042550becSJunchao Zhang PetscFunctionBegin; 1621*2c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Device", (PetscObject *)&container)); 1622*2c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 1623*2c4ab24aSJunchao Zhang 1624*2c4ab24aSJunchao Zhang const auto &n = coo->n; 1625*2c4ab24aSJunchao Zhang const auto &Annz = coo->Annz; 1626*2c4ab24aSJunchao Zhang const auto &Annz2 = coo->Annz2; 1627*2c4ab24aSJunchao Zhang const auto &Bnnz = coo->Bnnz; 1628*2c4ab24aSJunchao Zhang const auto &Bnnz2 = coo->Bnnz2; 1629*2c4ab24aSJunchao Zhang const auto &vsend = coo->sendbuf; 1630*2c4ab24aSJunchao Zhang const auto &v2 = coo->recvbuf; 1631*2c4ab24aSJunchao Zhang const auto &Ajmap1 = coo->Ajmap1; 1632*2c4ab24aSJunchao Zhang const auto &Ajmap2 = coo->Ajmap2; 1633*2c4ab24aSJunchao Zhang const auto &Aimap2 = coo->Aimap2; 1634*2c4ab24aSJunchao Zhang const auto &Bjmap1 = coo->Bjmap1; 1635*2c4ab24aSJunchao Zhang const auto &Bjmap2 = coo->Bjmap2; 1636*2c4ab24aSJunchao Zhang const auto &Bimap2 = coo->Bimap2; 1637*2c4ab24aSJunchao Zhang const auto &Aperm1 = coo->Aperm1; 1638*2c4ab24aSJunchao Zhang const auto &Aperm2 = coo->Aperm2; 1639*2c4ab24aSJunchao Zhang const auto &Bperm1 = coo->Bperm1; 1640*2c4ab24aSJunchao Zhang const auto &Bperm2 = coo->Bperm2; 1641*2c4ab24aSJunchao Zhang const auto &Cperm1 = coo->Cperm1; 1642*2c4ab24aSJunchao Zhang 16439566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(v, &memtype)); /* Return PETSC_MEMTYPE_HOST when v is NULL */ 164442550becSJunchao Zhang if (PetscMemTypeHost(memtype)) { /* If user gave v[] in host, we need to copy it to device if any */ 1645*2c4ab24aSJunchao Zhang v1 = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), MatScalarKokkosViewHost((PetscScalar *)v, n)); 164642550becSJunchao Zhang } else { 1647*2c4ab24aSJunchao Zhang v1 = MatScalarKokkosView((PetscScalar *)v, n); /* Directly use v[]'s memory */ 164842550becSJunchao Zhang } 164942550becSJunchao Zhang 165042550becSJunchao Zhang if (imode == INSERT_VALUES) { 16519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosViewWrite(A, &Aa)); /* write matrix values */ 16529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosViewWrite(B, &Ba)); 1653394ed5ebSJunchao Zhang } else { 16549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosView(A, &Aa)); /* read & write matrix values */ 16559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosView(B, &Ba)); 165642550becSJunchao Zhang } 165742550becSJunchao Zhang 165842550becSJunchao Zhang /* Pack entries to be sent to remote */ 16599371c9d4SSatish Balay Kokkos::parallel_for( 16609371c9d4SSatish Balay vsend.extent(0), KOKKOS_LAMBDA(const PetscCount i) { vsend(i) = v1(Cperm1(i)); }); 166142550becSJunchao Zhang 166242550becSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 1663*2c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, vsend.data(), PETSC_MEMTYPE_KOKKOS, v2.data(), MPI_REPLACE)); 1664158ec288SJunchao Zhang /* Add local entries to A and B in one kernel */ 16659371c9d4SSatish Balay Kokkos::parallel_for( 16669371c9d4SSatish Balay Annz + Bnnz, KOKKOS_LAMBDA(PetscCount i) { 1667158ec288SJunchao Zhang PetscScalar sum = 0.0; 1668158ec288SJunchao Zhang if (i < Annz) { 1669158ec288SJunchao Zhang for (PetscCount k = Ajmap1(i); k < Ajmap1(i + 1); k++) sum += v1(Aperm1(k)); 1670ac38520cSJunchao Zhang Aa(i) = (imode == INSERT_VALUES ? 0.0 : Aa(i)) + sum; 1671158ec288SJunchao Zhang } else { 1672158ec288SJunchao Zhang i -= Annz; 1673158ec288SJunchao Zhang for (PetscCount k = Bjmap1(i); k < Bjmap1(i + 1); k++) sum += v1(Bperm1(k)); 1674ac38520cSJunchao Zhang Ba(i) = (imode == INSERT_VALUES ? 0.0 : Ba(i)) + sum; 1675158ec288SJunchao Zhang } 1676158ec288SJunchao Zhang }); 1677*2c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, vsend.data(), v2.data(), MPI_REPLACE)); 167842550becSJunchao Zhang 1679158ec288SJunchao Zhang /* Add received remote entries to A and B in one kernel */ 16809371c9d4SSatish Balay Kokkos::parallel_for( 16819371c9d4SSatish Balay Annz2 + Bnnz2, KOKKOS_LAMBDA(PetscCount i) { 1682158ec288SJunchao Zhang if (i < Annz2) { 1683158ec288SJunchao Zhang for (PetscCount k = Ajmap2(i); k < Ajmap2(i + 1); k++) Aa(Aimap2(i)) += v2(Aperm2(k)); 1684158ec288SJunchao Zhang } else { 1685158ec288SJunchao Zhang i -= Annz2; 1686158ec288SJunchao Zhang for (PetscCount k = Bjmap2(i); k < Bjmap2(i + 1); k++) Ba(Bimap2(i)) += v2(Bperm2(k)); 1687158ec288SJunchao Zhang } 1688158ec288SJunchao Zhang }); 168942550becSJunchao Zhang 1690394ed5ebSJunchao Zhang if (imode == INSERT_VALUES) { 16919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosViewWrite(A, &Aa)); /* Increase A & B's state etc. */ 16929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosViewWrite(B, &Ba)); 1693394ed5ebSJunchao Zhang } else { 16949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosView(A, &Aa)); 16959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosView(B, &Ba)); 1696394ed5ebSJunchao Zhang } 16973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 169842550becSJunchao Zhang } 169942550becSJunchao Zhang 1700*2c4ab24aSJunchao Zhang static PetscErrorCode MatDestroy_MPIAIJKokkos(Mat A) 1701d71ae5a4SJacob Faibussowitsch { 1702076ba34aSJunchao Zhang PetscFunctionBegin; 17039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatMPIAIJSetPreallocation_C", NULL)); 17049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", NULL)); 17059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetPreallocationCOO_C", NULL)); 17069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetValuesCOO_C", NULL)); 17079566063dSJacob Faibussowitsch PetscCall(MatDestroy_MPIAIJ(A)); 17083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1709076ba34aSJunchao Zhang } 1710076ba34aSJunchao Zhang 1711*2c4ab24aSJunchao Zhang static PetscErrorCode MatSetOps_MPIAIJKokkos(Mat B) 1712*2c4ab24aSJunchao Zhang { 1713*2c4ab24aSJunchao Zhang PetscFunctionBegin; 1714*2c4ab24aSJunchao Zhang B->ops->assemblyend = MatAssemblyEnd_MPIAIJKokkos; 1715*2c4ab24aSJunchao Zhang B->ops->mult = MatMult_MPIAIJKokkos; 1716*2c4ab24aSJunchao Zhang B->ops->multadd = MatMultAdd_MPIAIJKokkos; 1717*2c4ab24aSJunchao Zhang B->ops->multtranspose = MatMultTranspose_MPIAIJKokkos; 1718*2c4ab24aSJunchao Zhang B->ops->productsetfromoptions = MatProductSetFromOptions_MPIAIJKokkos; 1719*2c4ab24aSJunchao Zhang B->ops->destroy = MatDestroy_MPIAIJKokkos; 1720*2c4ab24aSJunchao Zhang 1721*2c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJKokkos)); 1722*2c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJGetLocalMatMerge_C", MatMPIAIJGetLocalMatMerge_MPIAIJKokkos)); 1723*2c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJKokkos)); 1724*2c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJKokkos)); 1725*2c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 1726*2c4ab24aSJunchao Zhang } 1727*2c4ab24aSJunchao Zhang 1728d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat A, MatType mtype, MatReuse reuse, Mat *newmat) 1729d71ae5a4SJacob Faibussowitsch { 17308c3ff71bSJunchao Zhang Mat B; 1731076ba34aSJunchao Zhang Mat_MPIAIJ *a; 17328c3ff71bSJunchao Zhang 17338c3ff71bSJunchao Zhang PetscFunctionBegin; 17348c3ff71bSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 17359566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, newmat)); 17368c3ff71bSJunchao Zhang } else if (reuse == MAT_REUSE_MATRIX) { 17379566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *newmat, SAME_NONZERO_PATTERN)); 17388c3ff71bSJunchao Zhang } 17398c3ff71bSJunchao Zhang B = *newmat; 17408c3ff71bSJunchao Zhang 17416f3d89d0SStefano Zampini B->boundtocpu = PETSC_FALSE; 17429566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 17439566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECKOKKOS, &B->defaultvectype)); 17449566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJKOKKOS)); 17458c3ff71bSJunchao Zhang 1746076ba34aSJunchao Zhang a = static_cast<Mat_MPIAIJ *>(A->data); 17479566063dSJacob Faibussowitsch if (a->A) PetscCall(MatSetType(a->A, MATSEQAIJKOKKOS)); 17489566063dSJacob Faibussowitsch if (a->B) PetscCall(MatSetType(a->B, MATSEQAIJKOKKOS)); 17499566063dSJacob Faibussowitsch if (a->lvec) PetscCall(VecSetType(a->lvec, VECSEQKOKKOS)); 1750*2c4ab24aSJunchao Zhang PetscCall(MatSetOps_MPIAIJKokkos(B)); 17513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17528c3ff71bSJunchao Zhang } 1753*2c4ab24aSJunchao Zhang 17543f3ba80aSJunchao Zhang /*MC 175511a5261eSBarry Smith MATAIJKOKKOS - "mpiaijkokkos", a matrix type to be used for CSR sparse matrices with Kokkos 17568c3ff71bSJunchao Zhang 17573f3ba80aSJunchao Zhang A matrix type type using Kokkos-Kernels CrsMatrix type for portability across different device types 17583f3ba80aSJunchao Zhang 17592ef1f0ffSBarry Smith Options Database Key: 17602ef1f0ffSBarry Smith . -mat_type aijkokkos - sets the matrix type to `MATAIJKOKKOS` 17613f3ba80aSJunchao Zhang 17623f3ba80aSJunchao Zhang Level: beginner 17633f3ba80aSJunchao Zhang 17642ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateAIJKokkos()`, `MATSEQAIJKOKKOS`, `MATSEQAIJ`, `MATMPIAIJ` 17653f3ba80aSJunchao Zhang M*/ 1766d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJKokkos(Mat A) 1767d71ae5a4SJacob Faibussowitsch { 17688c3ff71bSJunchao Zhang PetscFunctionBegin; 17699566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 17709566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIAIJ(A)); 17719566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIAIJ_MPIAIJKokkos(A, MATMPIAIJKOKKOS, MAT_INPLACE_MATRIX, &A)); 17723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17738c3ff71bSJunchao Zhang } 17748c3ff71bSJunchao Zhang 17758c3ff71bSJunchao Zhang /*@C 177611a5261eSBarry Smith MatCreateAIJKokkos - Creates a sparse matrix in `MATAIJKOKOS` (compressed row) format 17778c3ff71bSJunchao Zhang (the default parallel PETSc format). This matrix will ultimately pushed down 177820f4b53cSBarry Smith to Kokkos for calculations. 17798c3ff71bSJunchao Zhang 17808c3ff71bSJunchao Zhang Collective 17818c3ff71bSJunchao Zhang 17828c3ff71bSJunchao Zhang Input Parameters: 178311a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF` 178420f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 178520f4b53cSBarry Smith This value should be the same as the local size used in creating the 178620f4b53cSBarry Smith y vector for the matrix-vector product y = Ax. 178720f4b53cSBarry Smith . n - This value should be the same as the local size used in creating the 178820f4b53cSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 178920f4b53cSBarry Smith calculated if N is given) For square matrices n is almost always `m`. 179020f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 179120f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 179220f4b53cSBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 179320f4b53cSBarry Smith (same value is used for all local rows) 179420f4b53cSBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 179520f4b53cSBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 179620f4b53cSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 179720f4b53cSBarry Smith The size of this array is equal to the number of local rows, i.e `m`. 179820f4b53cSBarry Smith For matrices you plan to factor you must leave room for the diagonal entry and 179920f4b53cSBarry Smith put in the entry even if it is zero. 180020f4b53cSBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 180120f4b53cSBarry Smith submatrix (same value is used for all local rows). 180220f4b53cSBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 180320f4b53cSBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 180420f4b53cSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 180520f4b53cSBarry Smith structure. The size of this array is equal to the number 180620f4b53cSBarry Smith of local rows, i.e `m`. 18078c3ff71bSJunchao Zhang 18088c3ff71bSJunchao Zhang Output Parameter: 18098c3ff71bSJunchao Zhang . A - the matrix 18108c3ff71bSJunchao Zhang 18112ef1f0ffSBarry Smith Level: intermediate 18122ef1f0ffSBarry Smith 18132ef1f0ffSBarry Smith Notes: 181411a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 18158c3ff71bSJunchao Zhang MatXXXXSetPreallocation() paradigm instead of this routine directly. 181611a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 18178c3ff71bSJunchao Zhang 1818667f096bSBarry Smith The AIJ format, also called compressed row storage), is fully compatible with standard Fortran 18198c3ff71bSJunchao Zhang storage. That is, the stored row and column indices can begin at 18202ef1f0ffSBarry Smith either one (as in Fortran) or zero. 18218c3ff71bSJunchao Zhang 18222ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATAIJKOKOS`, `MATSEQAIJKOKOS`, `MATMPIAIJKOKOS`, `MatCreate()`, `MatCreateAIJ()`, `MatSetValues()`, 18232ef1f0ffSBarry Smith `MatSeqAIJSetColumnIndices()`, `MatCreateSeqAIJWithArrays()`, `MatCreateAIJ()`, `MATMPIAIJKOKKOS`, `MATAIJKOKKOS` 18248c3ff71bSJunchao Zhang @*/ 1825d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJKokkos(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 1826d71ae5a4SJacob Faibussowitsch { 18278c3ff71bSJunchao Zhang PetscMPIInt size; 18288c3ff71bSJunchao Zhang 18298c3ff71bSJunchao Zhang PetscFunctionBegin; 18309566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 18319566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 18329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 18338c3ff71bSJunchao Zhang if (size > 1) { 18349566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJKOKKOS)); 18359566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 18368c3ff71bSJunchao Zhang } else { 18379566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJKOKKOS)); 18389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 18398c3ff71bSJunchao Zhang } 18403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18418c3ff71bSJunchao Zhang } 1842