1d326c3f1SJunchao Zhang #include <petsc_kokkos.hpp> 211d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 3f0e6e2d1SJunchao Zhang #include <petscpkg_version.h> 442550becSJunchao Zhang #include <petsc/private/sfimpl.h> 52c4ab24aSJunchao Zhang #include <../src/mat/impls/aij/seq/kokkos/aijkok.hpp> 68c3ff71bSJunchao Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 7076ba34aSJunchao Zhang #include <KokkosSparse_spadd.hpp> 80e3ece09SJunchao Zhang #include <KokkosSparse_spgemm.hpp> 911d22bbfSJunchao Zhang 1066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIAIJKokkos(Mat A, MatAssemblyType mode) 11d71ae5a4SJacob Faibussowitsch { 1230203840SJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)A->data; 138c3ff71bSJunchao Zhang 148c3ff71bSJunchao Zhang PetscFunctionBegin; 159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd_MPIAIJ(A, mode)); 1630203840SJunchao Zhang /* E.g., MatCreateSubMatrix() calls MatCreateMPIAIJWithSeqAIJ(comm,A,B,..), which creates Bnew of SEQAIJ and destroys B of SEQAIJKOKKOS. 1730203840SJunchao Zhang Thus we finalize A/B/lvec's type in MatAssemblyEnd() to handle various cases. 1830203840SJunchao Zhang */ 1930203840SJunchao Zhang if (mode == MAT_FINAL_ASSEMBLY) { 2030203840SJunchao Zhang PetscCall(MatSetType(mpiaij->A, MATSEQAIJKOKKOS)); 2130203840SJunchao Zhang PetscCall(MatSetType(mpiaij->B, MATSEQAIJKOKKOS)); 2230203840SJunchao Zhang PetscCall(VecSetType(mpiaij->lvec, VECSEQKOKKOS)); 2330203840SJunchao Zhang } 243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 258c3ff71bSJunchao Zhang } 268c3ff71bSJunchao Zhang 2766976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJKokkos(Mat mat, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 28d71ae5a4SJacob Faibussowitsch { 29*2cdb1aeaSJunchao Zhang Mat_MPIAIJ *mpiaij; 308c3ff71bSJunchao Zhang 318c3ff71bSJunchao Zhang PetscFunctionBegin; 32*2cdb1aeaSJunchao Zhang // reuse MPIAIJ's preallocation, which sets A/B's blocksize along other things 33*2cdb1aeaSJunchao Zhang PetscCall(MatMPIAIJSetPreallocation_MPIAIJ(mat, d_nz, d_nnz, o_nz, o_nnz)); 34*2cdb1aeaSJunchao Zhang mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 35*2cdb1aeaSJunchao Zhang PetscCall(MatConvert_SeqAIJ_SeqAIJKokkos(mpiaij->A, MATSEQAIJKOKKOS, MAT_INPLACE_MATRIX, &mpiaij->A)); 36*2cdb1aeaSJunchao Zhang PetscCall(MatConvert_SeqAIJ_SeqAIJKokkos(mpiaij->B, MATSEQAIJKOKKOS, MAT_INPLACE_MATRIX, &mpiaij->B)); 373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 388c3ff71bSJunchao Zhang } 398c3ff71bSJunchao Zhang 4066976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJKokkos(Mat mat, Vec xx, Vec yy) 41d71ae5a4SJacob Faibussowitsch { 428c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 438c3ff71bSJunchao Zhang PetscInt nt; 448c3ff71bSJunchao Zhang 458c3ff71bSJunchao Zhang PetscFunctionBegin; 469566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 4708401ef6SPierre Jolivet PetscCheck(nt == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->cmap->n, nt); 489566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 499566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->mult)(mpiaij->A, xx, yy)); 509566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 519566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multadd)(mpiaij->B, mpiaij->lvec, yy, yy)); 523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 538c3ff71bSJunchao Zhang } 548c3ff71bSJunchao Zhang 5566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJKokkos(Mat mat, Vec xx, Vec yy, Vec zz) 56d71ae5a4SJacob Faibussowitsch { 578c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 588c3ff71bSJunchao Zhang PetscInt nt; 598c3ff71bSJunchao Zhang 608c3ff71bSJunchao Zhang PetscFunctionBegin; 619566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 6208401ef6SPierre Jolivet PetscCheck(nt == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->cmap->n, nt); 639566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 649566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->multadd)(mpiaij->A, xx, yy, zz)); 659566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 669566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multadd)(mpiaij->B, mpiaij->lvec, zz, zz)); 673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 688c3ff71bSJunchao Zhang } 698c3ff71bSJunchao Zhang 7066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJKokkos(Mat mat, Vec xx, Vec yy) 71d71ae5a4SJacob Faibussowitsch { 728c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 738c3ff71bSJunchao Zhang PetscInt nt; 748c3ff71bSJunchao Zhang 758c3ff71bSJunchao Zhang PetscFunctionBegin; 769566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 7708401ef6SPierre Jolivet PetscCheck(nt == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->rmap->n, nt); 789566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multtranspose)(mpiaij->B, xx, mpiaij->lvec)); 799566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->multtranspose)(mpiaij->A, xx, yy)); 809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, mpiaij->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 819566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, mpiaij->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 838c3ff71bSJunchao Zhang } 848c3ff71bSJunchao Zhang 85076ba34aSJunchao Zhang /* Merge the "A, B" matrices of mat into a matrix C. mat's type is MPIAIJKOKKOS. C's type is MATSEQAIJKOKKOS. 86076ba34aSJunchao Zhang A is put before B. C's size would be A->rmap->n by (A->cmap->n + B->cmap->n). 87076ba34aSJunchao Zhang C still uses local column ids. Their corresponding global column ids are returned in glob. 88076ba34aSJunchao Zhang */ 8966976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIAIJGetLocalMatMerge_MPIAIJKokkos(Mat mat, MatReuse reuse, IS *glob, Mat *C) 90d71ae5a4SJacob Faibussowitsch { 91076ba34aSJunchao Zhang Mat Ad, Ao; 92076ba34aSJunchao Zhang const PetscInt *cmap; 93076ba34aSJunchao Zhang 94076ba34aSJunchao Zhang PetscFunctionBegin; 959566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(mat, &Ad, &Ao, &cmap)); 969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosMergeMats(Ad, Ao, reuse, C)); 97076ba34aSJunchao Zhang if (glob) { 98076ba34aSJunchao Zhang PetscInt cst, i, dn, on, *gidx; 999566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, NULL, &dn)); 1009566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 1019566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cst, NULL)); 1029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 103076ba34aSJunchao Zhang for (i = 0; i < dn; i++) gidx[i] = cst + i; 104076ba34aSJunchao Zhang for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 1059566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 106076ba34aSJunchao Zhang } 1073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 108076ba34aSJunchao Zhang } 109076ba34aSJunchao Zhang 1100e3ece09SJunchao Zhang /* Structs used in matrix products of type C=AB, C=A^tB and C=B^tAB */ 111076ba34aSJunchao Zhang struct MatMatStruct { 1120e3ece09SJunchao Zhang PetscInt n, *garray; // C's garray and its size. 1130e3ece09SJunchao Zhang KokkosCsrMatrix Cd, Co; // C is in split form matrices (all in local column indcies) 1140e3ece09SJunchao Zhang KokkosCsrMatrix C1, C2, C3, C4; // intermediate mat products 1150e3ece09SJunchao Zhang KokkosCsrMatrix C2_mid, C4_mid; // alias of C2, C4; share their a[], i[], but with different j[] (hence column size) 1160e3ece09SJunchao Zhang PetscIntKokkosView E_NzLeft; 1170e3ece09SJunchao Zhang PetscSF sf = nullptr; // SF to bcast or reduce matrices E to F 1180e3ece09SJunchao Zhang MatScalarKokkosView rootBuf, leafBuf; 1190e3ece09SJunchao Zhang KokkosCsrMatrix Fd, Fo; // F in split form 1200e3ece09SJunchao Zhang 1210e3ece09SJunchao Zhang KernelHandle kh1; // compute C1, add C1+C3 or C1+Fd 1220e3ece09SJunchao Zhang KernelHandle kh2; // compute C2, add C2+C4 or C2+Fo 1230e3ece09SJunchao Zhang KernelHandle kh3; // compute C3 1240e3ece09SJunchao Zhang KernelHandle kh4; // compute C4 1250e3ece09SJunchao Zhang 126aaa8cc7dSPierre Jolivet PetscInt E_TeamSize; // kernel launching parameters in merging E or splitting F 1270e3ece09SJunchao Zhang PetscInt E_VectorLength; 1280e3ece09SJunchao Zhang PetscInt E_RowsPerTeam; 1290e3ece09SJunchao Zhang PetscInt F_TeamSize; 1300e3ece09SJunchao Zhang PetscInt F_VectorLength; 1310e3ece09SJunchao Zhang PetscInt F_RowsPerTeam; 132076ba34aSJunchao Zhang 133d71ae5a4SJacob Faibussowitsch ~MatMatStruct() 134d71ae5a4SJacob Faibussowitsch { 1353ba16761SJacob Faibussowitsch PetscFunctionBegin; 1363ba16761SJacob Faibussowitsch PetscCallAbort(PETSC_COMM_SELF, PetscSFDestroy(&sf)); 1373ba16761SJacob Faibussowitsch PetscFunctionReturnVoid(); 138076ba34aSJunchao Zhang } 139076ba34aSJunchao Zhang }; 140076ba34aSJunchao Zhang 141076ba34aSJunchao Zhang struct MatMatStruct_AB : public MatMatStruct { 1420e3ece09SJunchao Zhang PetscIntKokkosView F_NzLeft; // plans to split F (in leafbuf) into Fd, Fo 1430e3ece09SJunchao Zhang PetscIntKokkosView irootloc; // plans to put E (i.e., Bd, Bo) into rootBuf 1440e3ece09SJunchao Zhang PetscIntKokkosView rowoffset; 145076ba34aSJunchao Zhang }; 146076ba34aSJunchao Zhang 147076ba34aSJunchao Zhang struct MatMatStruct_AtB : public MatMatStruct { 1480e3ece09SJunchao Zhang MatColIdxKokkosView Fdjmap; // plans to reduce data in rootBuf to Fd, Fo 1490e3ece09SJunchao Zhang MatColIdxKokkosView Fdjperm; 1500e3ece09SJunchao Zhang MatColIdxKokkosView Fojmap; 1510e3ece09SJunchao Zhang MatColIdxKokkosView Fojperm; 152076ba34aSJunchao Zhang }; 153076ba34aSJunchao Zhang 1549371c9d4SSatish Balay struct MatProductData_MPIAIJKokkos { 1553ba16761SJacob Faibussowitsch MatMatStruct_AB *mmAB = nullptr; 1563ba16761SJacob Faibussowitsch MatMatStruct_AtB *mmAtB = nullptr; 1573ba16761SJacob Faibussowitsch PetscBool reusesym = PETSC_FALSE; 1580e3ece09SJunchao Zhang Mat Z = nullptr; // store Z=AB in computing BtAB 159076ba34aSJunchao Zhang 160d71ae5a4SJacob Faibussowitsch ~MatProductData_MPIAIJKokkos() 161d71ae5a4SJacob Faibussowitsch { 162076ba34aSJunchao Zhang delete mmAB; 163076ba34aSJunchao Zhang delete mmAtB; 1640e3ece09SJunchao Zhang PetscCallAbort(PETSC_COMM_SELF, MatDestroy(&Z)); 165076ba34aSJunchao Zhang } 166076ba34aSJunchao Zhang }; 167076ba34aSJunchao Zhang 168d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductDataDestroy_MPIAIJKokkos(void *data) 169d71ae5a4SJacob Faibussowitsch { 170076ba34aSJunchao Zhang PetscFunctionBegin; 1719566063dSJacob Faibussowitsch PetscCallCXX(delete static_cast<MatProductData_MPIAIJKokkos *>(data)); 1723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 173076ba34aSJunchao Zhang } 174076ba34aSJunchao Zhang 175076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices - Set the diag and offdiag matrices of a MATMPIAIJKOKKOS matrix. 176076ba34aSJunchao Zhang It is similar to MatCreateMPIAIJWithSplitArrays. 177076ba34aSJunchao Zhang 178076ba34aSJunchao Zhang Input Parameters: 179076ba34aSJunchao Zhang + mat - the MATMPIAIJKOKKOS matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set 180076ba34aSJunchao Zhang . A - the diag matrix using local col ids 181076ba34aSJunchao Zhang - B - the offdiag matrix using global col ids 182076ba34aSJunchao Zhang 1832fe279fdSBarry Smith Output Parameter: 184076ba34aSJunchao Zhang . mat - the updated MATMPIAIJKOKKOS matrix 185076ba34aSJunchao Zhang */ 1860e3ece09SJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Mat mat, Mat A, Mat B, PetscInt *garray) 187d71ae5a4SJacob Faibussowitsch { 188076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 189076ba34aSJunchao Zhang PetscInt m, n, M, N, Am, An, Bm, Bn; 190076ba34aSJunchao Zhang 191076ba34aSJunchao Zhang PetscFunctionBegin; 1929566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 1939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 1949566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &Am, &An)); 1959566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &Bm, &Bn)); 196076ba34aSJunchao Zhang 197aed4548fSBarry Smith PetscCheck(m == Am && m == Bm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of rows do not match"); 19808401ef6SPierre Jolivet PetscCheck(n == An, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of columns do not match"); 1990e3ece09SJunchao Zhang // PetscCheck(N == Bn, PETSC_COMM_SELF, PETSC_ERR_PLIB, "global number of columns do not match"); 20008401ef6SPierre Jolivet PetscCheck(!mpiaij->A && !mpiaij->B, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A, B of the MPIAIJ matrix are not empty"); 201076ba34aSJunchao Zhang mpiaij->A = A; 202076ba34aSJunchao Zhang mpiaij->B = B; 2030e3ece09SJunchao Zhang mpiaij->garray = garray; 204076ba34aSJunchao Zhang 205076ba34aSJunchao Zhang mat->preallocated = PETSC_TRUE; 206076ba34aSJunchao Zhang mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 207076ba34aSJunchao Zhang 2089566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 2099566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 210076ba34aSJunchao Zhang /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 211076ba34aSJunchao Zhang also gets mpiaij->B compacted, with its col ids and size reduced 212076ba34aSJunchao Zhang */ 2139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 2149566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 2159566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 217076ba34aSJunchao Zhang } 218076ba34aSJunchao Zhang 2190e3ece09SJunchao Zhang // Adapted from Kokkos-Kernels spmv_launch_parameters(), to get parameters in Kokkos nested loops which we used to merge or 2200e3ece09SJunchao Zhang // split csr matrices. The rule is to have "vector_length * team_size" be around 256 on GPUs (e.g., for a CUDA thread block) 2210e3ece09SJunchao Zhang template <class ExecutionSpace> 2220e3ece09SJunchao Zhang static PetscErrorCode MatMergeGetLaunchParameters(PetscInt numRows, PetscInt nnz, PetscInt rows_per_thread, PetscInt &team_size, PetscInt &vector_length, PetscInt &rows_per_team) 223d71ae5a4SJacob Faibussowitsch { 2240e3ece09SJunchao Zhang Kokkos::TeamPolicy<ExecutionSpace> teamPolicy(128, Kokkos::AUTO); 225076ba34aSJunchao Zhang 226076ba34aSJunchao Zhang PetscFunctionBegin; 2270e3ece09SJunchao Zhang PetscInt nnz_per_row = numRows ? (nnz / numRows) : 0; // we might meet empty matrices 228076ba34aSJunchao Zhang 2290e3ece09SJunchao Zhang if (nnz_per_row < 1) nnz_per_row = 1; 230076ba34aSJunchao Zhang 2310e3ece09SJunchao Zhang int max_vector_length = teamPolicy.vector_length_max(); 232076ba34aSJunchao Zhang 2330e3ece09SJunchao Zhang if (vector_length < 1) { 2340e3ece09SJunchao Zhang vector_length = 1; 2350e3ece09SJunchao Zhang while (vector_length < max_vector_length && vector_length * 6 < nnz_per_row) vector_length *= 2; 236076ba34aSJunchao Zhang } 237076ba34aSJunchao Zhang 2380e3ece09SJunchao Zhang // Determine rows per thread 2390e3ece09SJunchao Zhang if (rows_per_thread < 1) { 2400e3ece09SJunchao Zhang if (KokkosKernels::Impl::kk_is_gpu_exec_space<ExecutionSpace>()) rows_per_thread = 1; 2410e3ece09SJunchao Zhang else { 2420e3ece09SJunchao Zhang if (nnz_per_row < 20 && nnz > 5000000) { 2430e3ece09SJunchao Zhang rows_per_thread = 256; 2440e3ece09SJunchao Zhang } else rows_per_thread = 64; 245076ba34aSJunchao Zhang } 246076ba34aSJunchao Zhang } 247076ba34aSJunchao Zhang 2480e3ece09SJunchao Zhang if (team_size < 1) { 2490e3ece09SJunchao Zhang if (KokkosKernels::Impl::kk_is_gpu_exec_space<ExecutionSpace>()) { 2500e3ece09SJunchao Zhang team_size = 256 / vector_length; 251076ba34aSJunchao Zhang } else { 2520e3ece09SJunchao Zhang team_size = 1; 2530e3ece09SJunchao Zhang } 254076ba34aSJunchao Zhang } 255076ba34aSJunchao Zhang 2560e3ece09SJunchao Zhang rows_per_team = rows_per_thread * team_size; 257076ba34aSJunchao Zhang 2580e3ece09SJunchao Zhang if (rows_per_team < 0) { 2590e3ece09SJunchao Zhang PetscInt nnz_per_team = 4096; 2600e3ece09SJunchao Zhang PetscInt conc = ExecutionSpace().concurrency(); 2610e3ece09SJunchao Zhang while ((conc * nnz_per_team * 4 > nnz) && (nnz_per_team > 256)) nnz_per_team /= 2; 2620e3ece09SJunchao Zhang rows_per_team = (nnz_per_team + nnz_per_row - 1) / nnz_per_row; 2630e3ece09SJunchao Zhang } 2643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 265076ba34aSJunchao Zhang } 266076ba34aSJunchao Zhang 2670e3ece09SJunchao Zhang /* 2680e3ece09SJunchao Zhang Reduce two sets of global indices into local ones 269076ba34aSJunchao Zhang 270076ba34aSJunchao Zhang Input Parameters: 2710e3ece09SJunchao Zhang + n1 - size of garray1[], the first set 2720e3ece09SJunchao Zhang . garray1[n1] - a sorted global index array (without duplicates) 2730e3ece09SJunchao Zhang . m - size of indices[], the second set 2740e3ece09SJunchao Zhang - indices[m] - a unsorted global index array (might have duplicates), which will be updated on output into local ones 275076ba34aSJunchao Zhang 276076ba34aSJunchao Zhang Output Parameters: 2770e3ece09SJunchao Zhang + n2 - size of garray2[], the merged set, which combines garray1[] and indices[] 2780e3ece09SJunchao Zhang . garray2[n2] - allocated by callee using PetscMalloc1(). Contains sorted unique global indices (without duplicates). Caller needs to free it. 2790e3ece09SJunchao Zhang . map[n1] - allocated by caller. It gives garray1[i] = garray2[map[i]] 2800e3ece09SJunchao Zhang - indices[m] - on output, global indices in this array are rewritten with local ones, i.e, indices_input[i] = garray2[indices_output[i]] 281076ba34aSJunchao Zhang 2820e3ece09SJunchao Zhang Example, say 2830e3ece09SJunchao Zhang n1 = 5 2840e3ece09SJunchao Zhang garray1[5] = {1, 4, 7, 8, 10} 2850e3ece09SJunchao Zhang m = 4 2860e3ece09SJunchao Zhang indices[4] = {2, 4, 8, 9} 28711a5261eSBarry Smith 2880e3ece09SJunchao Zhang Combining them together, we have 7 global indices in garray2[] 2890e3ece09SJunchao Zhang n2 = 7 2900e3ece09SJunchao Zhang garray2[7] = {1, 2, 4, 7, 8, 9, 10} 2910e3ece09SJunchao Zhang 2920e3ece09SJunchao Zhang And we have map[] to connect "garray1[i] = garray2[map[i]], i=[0,n1)" 2930e3ece09SJunchao Zhang map[5] = {0, 2, 3, 4, 6} 2940e3ece09SJunchao Zhang 2950e3ece09SJunchao Zhang On output, indices[] is updated with local indices 2960e3ece09SJunchao Zhang indices[4] = {1, 2, 4, 5} 297076ba34aSJunchao Zhang */ 2980e3ece09SJunchao Zhang static PetscErrorCode ReduceTwoSetsOfGlobalIndices(PetscInt n1, const PetscInt *garray1, PetscInt m, PetscInt *indices, PetscInt *n2_, PetscInt **garray2_, PetscInt *map) 299d71ae5a4SJacob Faibussowitsch { 3000e3ece09SJunchao Zhang PetscHMapI g2l = nullptr; 3010e3ece09SJunchao Zhang PetscHashIter iter; 3020e3ece09SJunchao Zhang PetscInt tot, key, val; // total unique global indices. key is global id; val is local id 3030e3ece09SJunchao Zhang PetscInt n2, *garray2; 304076ba34aSJunchao Zhang 305076ba34aSJunchao Zhang PetscFunctionBegin; 3060e3ece09SJunchao Zhang tot = 0; 3070e3ece09SJunchao Zhang PetscCall(PetscHMapICreateWithSize(n1, &g2l)); 3080e3ece09SJunchao Zhang for (PetscInt i = 0; i < m; i++) { // insert those in indices[] 3090e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, indices[i], -1, &val)); // if not exist, val is set with -1 3100e3ece09SJunchao Zhang if (val < 0) PetscCall(PetscHMapISet(g2l, indices[i], tot++)); // val < 0 means gid is not in the hash table yet 311076ba34aSJunchao Zhang } 312076ba34aSJunchao Zhang 3130e3ece09SJunchao Zhang for (PetscInt i = 0; i < n1; i++) { // insert those in garray1[] 3140e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, garray1[i], -1, &val)); 3150e3ece09SJunchao Zhang if (val < 0) PetscCall(PetscHMapISet(g2l, garray1[i], tot++)); 316076ba34aSJunchao Zhang } 317076ba34aSJunchao Zhang 3180e3ece09SJunchao Zhang // Pull out (unique) globals in the hash table and put them in garray2[] 3190e3ece09SJunchao Zhang n2 = tot; 3200e3ece09SJunchao Zhang PetscCall(PetscMalloc1(n2, &garray2)); 3210e3ece09SJunchao Zhang tot = 0; 3220e3ece09SJunchao Zhang PetscHashIterBegin(g2l, iter); 3230e3ece09SJunchao Zhang while (!PetscHashIterAtEnd(g2l, iter)) { 3240e3ece09SJunchao Zhang PetscHashIterGetKey(g2l, iter, key); 3250e3ece09SJunchao Zhang PetscHashIterNext(g2l, iter); 3260e3ece09SJunchao Zhang garray2[tot++] = key; 327076ba34aSJunchao Zhang } 328076ba34aSJunchao Zhang 3290e3ece09SJunchao Zhang // Sort garray2[] and then map them to local indices starting from 0 3300e3ece09SJunchao Zhang PetscCall(PetscSortInt(n2, garray2)); 3310e3ece09SJunchao Zhang PetscCall(PetscHMapIClear(g2l)); 3320e3ece09SJunchao Zhang for (PetscInt i = 0; i < tot; i++) PetscCall(PetscHMapISet(g2l, garray2[i], i)); // i is the local id 333f0e6e2d1SJunchao Zhang 3340e3ece09SJunchao Zhang // Rewrite indices[] with local indices 335f0e6e2d1SJunchao Zhang for (PetscInt i = 0; i < m; i++) { 3360e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, indices[i], -1, &val)); 3370e3ece09SJunchao Zhang PetscAssert(val >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Met a negative local column index"); 3380e3ece09SJunchao Zhang indices[i] = val; 3390e3ece09SJunchao Zhang } 3400e3ece09SJunchao Zhang // Record the map that maps garray1[i] to garray2[map[i]] 3410e3ece09SJunchao Zhang for (PetscInt i = 0; i < n1; i++) PetscCall(PetscHMapIGetWithDefault(g2l, garray1[i], -1, &map[i])); 3420e3ece09SJunchao Zhang PetscCall(PetscHMapIDestroy(&g2l)); 3430e3ece09SJunchao Zhang *n2_ = n2; 3440e3ece09SJunchao Zhang *garray2_ = garray2; 3450e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 3460e3ece09SJunchao Zhang } 347f0e6e2d1SJunchao Zhang 3480e3ece09SJunchao Zhang /* 3490e3ece09SJunchao Zhang MatMPIAIJKokkosReduce - Reduce rows of a MPIAIJKOKKOS matrix (E, in split form) to produce another matrix (F, also in split form, stored in mm) 3500e3ece09SJunchao Zhang 3510e3ece09SJunchao Zhang It is the reverse of MatMPIAIJKokkosBcast() in some sense, but with a different signature since we do not really need a fully populated MPIAIJKOKKOS E. 3520e3ece09SJunchao Zhang 3530e3ece09SJunchao Zhang Think each row of E as a leaf, then the given ownerSF specifies roots for the leaves. Roots may connect to multiple leaves. 3540e3ece09SJunchao Zhang In this routine, we sparse-merge leaves (rows) at their roots to form potentially longer rows in F. F's number of rows will be nroots of ownerSF. 3550e3ece09SJunchao Zhang 3560e3ece09SJunchao Zhang Input Parameters: 3570e3ece09SJunchao Zhang + comm - MPI communicator of E 3580e3ece09SJunchao Zhang . A - diag block of E, using local column indices 3590e3ece09SJunchao Zhang . B - off-diag block of E, using local column indices 3600e3ece09SJunchao Zhang . cstart - (global) start column of Ed 3610e3ece09SJunchao Zhang . cend - (global) end column + 1 of Ed. In other words, E's column ownership is in range of [cstart, cend) 3620e3ece09SJunchao Zhang . garray1[n1] - global column indices of Eo. Here n1 is Eo's column size. 3630e3ece09SJunchao Zhang . ownerSF - the SF specifies ownership (root) of rows in E 3640e3ece09SJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 3650e3ece09SJunchao Zhang - mm - to stash intermediate data structures for reuse 3660e3ece09SJunchao Zhang 3670e3ece09SJunchao Zhang Output Parameters: 3680e3ece09SJunchao Zhang + map[n1] - allocated by caller. It maps garray1[] to garray2[]. See more at ReduceTwoSetsOfGlobalIndices(). 3690e3ece09SJunchao Zhang - mm - contains various info, such as garray2[], F (Fd, Fo) etc. 3700e3ece09SJunchao Zhang 3710e3ece09SJunchao Zhang Notes: 3720e3ece09SJunchao Zhang When reuse = MAT_REUSE_MATRIX, cstart, cend, garray1, ownerSF, map are not significant. 3730e3ece09SJunchao Zhang 3740e3ece09SJunchao Zhang */ 3750e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosReduceBegin(MPI_Comm comm, KokkosCsrMatrix A, KokkosCsrMatrix B, PetscInt cstart, PetscInt cend, const PetscInt *garray1, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AtB *mm) 3760e3ece09SJunchao Zhang { 3770e3ece09SJunchao Zhang PetscFunctionBegin; 3780e3ece09SJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 3790e3ece09SJunchao Zhang PetscInt Em = A.numRows(), Fm; 3800e3ece09SJunchao Zhang PetscInt n1 = B.numCols(); 3810e3ece09SJunchao Zhang 3820e3ece09SJunchao Zhang PetscCall(PetscSFGetGraph(ownerSF, &Fm, NULL, NULL, NULL)); // Fm = #rows of F = nroots of ownerSF 3830e3ece09SJunchao Zhang 3840e3ece09SJunchao Zhang // Do the analysis on host 3850e3ece09SJunchao Zhang auto Ai_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), A.graph.row_map); 3860e3ece09SJunchao Zhang auto Aj_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), A.graph.entries); 3870e3ece09SJunchao Zhang auto Bi_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), B.graph.row_map); 3880e3ece09SJunchao Zhang auto Bj_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), B.graph.entries); 3890e3ece09SJunchao Zhang const MatRowMapType *Ai = Ai_h.data(), *Bi = Bi_h.data(); 3900e3ece09SJunchao Zhang const MatColIdxType *Aj = Aj_h.data(), *Bj = Bj_h.data(); 3910e3ece09SJunchao Zhang 3920e3ece09SJunchao Zhang // Count how many nonzeros of each row in E are in the left of the diag block [cstart,cend) 3937b8d4ba6SJunchao Zhang PetscIntKokkosViewHost E_NzLeft_h(NoInit("E_NzLeft_h"), Em), E_RowLen_h(NoInit("E_RowLen_h"), Em); 3940e3ece09SJunchao Zhang PetscInt *E_NzLeft = E_NzLeft_h.data(), *E_RowLen = E_RowLen_h.data(); 3950e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) { 3960e3ece09SJunchao Zhang const PetscInt *first, *last, *it; 3970e3ece09SJunchao Zhang PetscInt count, step; 3980e3ece09SJunchao Zhang // std::lower_bound(first,last,cstart), but need to use global column indices 3990e3ece09SJunchao Zhang first = Bj + Bi[i]; 4000e3ece09SJunchao Zhang last = Bj + Bi[i + 1]; 401f0e6e2d1SJunchao Zhang count = last - first; 402f0e6e2d1SJunchao Zhang while (count > 0) { 403f0e6e2d1SJunchao Zhang it = first; 404f0e6e2d1SJunchao Zhang step = count / 2; 405f0e6e2d1SJunchao Zhang it += step; 4060e3ece09SJunchao Zhang if (garray1[*it] < cstart) { // map local to global 407f0e6e2d1SJunchao Zhang first = ++it; 408f0e6e2d1SJunchao Zhang count -= step + 1; 409f0e6e2d1SJunchao Zhang } else count = step; 410f0e6e2d1SJunchao Zhang } 4110e3ece09SJunchao Zhang E_NzLeft[i] = first - (Bj + Bi[i]); 4120e3ece09SJunchao Zhang E_RowLen[i] = (Ai[i + 1] - Ai[i]) + (Bi[i + 1] - Bi[i]); 413f0e6e2d1SJunchao Zhang } 414f0e6e2d1SJunchao Zhang 4150e3ece09SJunchao Zhang // Get length of rows (i.e., sizes of leaves) that contribute to my roots 4160e3ece09SJunchao Zhang const PetscMPIInt *iranks, *ranks; 4170e3ece09SJunchao Zhang const PetscInt *ioffset, *irootloc, *roffset, *rmine; 4180e3ece09SJunchao Zhang PetscInt niranks, nranks; 4190e3ece09SJunchao Zhang MPI_Request *reqs; 4200e3ece09SJunchao Zhang PetscMPIInt tag; 4210e3ece09SJunchao Zhang PetscSF reduceSF; 4220e3ece09SJunchao Zhang PetscInt *sdisp, *rdisp; 423f0e6e2d1SJunchao Zhang 4240e3ece09SJunchao Zhang PetscCall(PetscCommGetNewTag(comm, &tag)); 4250e3ece09SJunchao Zhang PetscCall(PetscSFGetLeafRanks(ownerSF, &niranks, &iranks, &ioffset, &irootloc)); // get leaf ranks connecting to roots on this process (I'll recv from them) 4260e3ece09SJunchao Zhang PetscCall(PetscSFGetRootRanks(ownerSF, &nranks, &ranks, &roffset, &rmine, NULL)); // get root ranks this process connects (I'll send to them) 427f0e6e2d1SJunchao Zhang 4280e3ece09SJunchao Zhang // Find out length of each row I will receive. Even for the same row index, when they are from 4290e3ece09SJunchao Zhang // different senders, they might have different lengths (and sparsity patterns) 4300e3ece09SJunchao Zhang PetscInt sendRowCnt = roffset[nranks], recvRowCnt = ioffset[niranks]; 4310e3ece09SJunchao Zhang PetscInt *sendRowLen, *recvRowLen; // lengths of rows of I need to send/recv per process 432f0e6e2d1SJunchao Zhang 4330e3ece09SJunchao Zhang PetscCall(PetscMalloc5(sendRowCnt, &sendRowLen, recvRowCnt + 1, &recvRowLen, nranks, &sdisp, niranks + 1, &rdisp, nranks + niranks, &reqs)); 4340e3ece09SJunchao Zhang 4350e3ece09SJunchao Zhang for (PetscInt i = 0; i < sendRowCnt; i++) sendRowLen[i] = E_RowLen[rmine[i]]; 4360e3ece09SJunchao Zhang recvRowLen[0] = 0; // since we will make it in CSR format later 4370e3ece09SJunchao Zhang recvRowLen++; // advance the pointer now 4380e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { MPI_Irecv(&recvRowLen[ioffset[i]], ioffset[i + 1] - ioffset[i], MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i]); } 4390e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { MPI_Isend(&sendRowLen[roffset[i]], roffset[i + 1] - roffset[i], MPIU_INT, ranks[i], tag, comm, &reqs[i]); } 4400e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(nranks + niranks, reqs, MPI_STATUSES_IGNORE)); 4410e3ece09SJunchao Zhang 4420e3ece09SJunchao Zhang // Build the real PetscSF for reducing E rows (buffer to buffer) 4430e3ece09SJunchao Zhang rdisp[0] = 0; 4440e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { 4450e3ece09SJunchao Zhang rdisp[i + 1] = rdisp[i]; 4460e3ece09SJunchao Zhang for (PetscInt j = ioffset[i]; j < ioffset[i + 1]; j++) { rdisp[i + 1] += recvRowLen[j]; } 4470e3ece09SJunchao Zhang } 4480e3ece09SJunchao Zhang recvRowLen--; // put it back into csr format 4490e3ece09SJunchao Zhang for (PetscInt i = 0; i < recvRowCnt; i++) recvRowLen[i + 1] += recvRowLen[i]; 4500e3ece09SJunchao Zhang 4510e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { MPI_Irecv(&sdisp[i], 1, MPIU_INT, ranks[i], tag, comm, &reqs[i]); } 4520e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { MPI_Isend(&rdisp[i], 1, MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i]); } 4530e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(nranks + niranks, reqs, MPI_STATUSES_IGNORE)); 4540e3ece09SJunchao Zhang 4550e3ece09SJunchao Zhang PetscInt nleaves = 0, Enz = 0; // leaves are nonzeros I will send 4560e3ece09SJunchao Zhang PetscInt nroots = rdisp[niranks]; // roots are nonzeros I will recv 4570e3ece09SJunchao Zhang PetscSFNode *iremote; 4580e3ece09SJunchao Zhang 4590e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) Enz += E_RowLen[i]; 4600e3ece09SJunchao Zhang PetscAssert(A.nnz() + B.nnz() == Enz, comm, PETSC_ERR_PLIB, "Enz should be equal to sum of nnz of A and B"); 4610e3ece09SJunchao Zhang PetscCallMPI(PetscMalloc1(Enz, &iremote)); // no free, since we give ownership to reduceSF 4620e3ece09SJunchao Zhang 4630e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { 4640e3ece09SJunchao Zhang PetscInt count = 0; 4650e3ece09SJunchao Zhang for (PetscInt j = roffset[i]; j < roffset[i + 1]; j++) count += E_RowLen[rmine[j]]; 4660e3ece09SJunchao Zhang for (PetscInt j = 0; j < count; j++) { 4670e3ece09SJunchao Zhang iremote[nleaves + j].rank = ranks[i]; 4680e3ece09SJunchao Zhang iremote[nleaves + j].index = sdisp[i] + j; 4690e3ece09SJunchao Zhang } 4700e3ece09SJunchao Zhang nleaves += count; 4710e3ece09SJunchao Zhang } 4720e3ece09SJunchao Zhang PetscCheck(nleaves == Enz, comm, PETSC_ERR_PLIB, "nleaves should be equal to Enz"); 4730e3ece09SJunchao Zhang 4740e3ece09SJunchao Zhang PetscCall(PetscSFCreate(comm, &reduceSF)); 4750e3ece09SJunchao Zhang PetscCall(PetscSFSetGraph(reduceSF, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 4760e3ece09SJunchao Zhang 4770e3ece09SJunchao Zhang // Copy (global) column indices of the needed rows in E to sendCol[], and then PetscSFReduce to recvCol[] 4780e3ece09SJunchao Zhang PetscInt *sendCol, *recvCol; 4790e3ece09SJunchao Zhang PetscCall(PetscMalloc2(nleaves, &sendCol, nroots, &recvCol)); 4800e3ece09SJunchao Zhang for (PetscInt k = 0; k < roffset[nranks]; k++) { 4810e3ece09SJunchao Zhang PetscInt i = rmine[k]; // row to be copied 4820e3ece09SJunchao Zhang PetscInt *buf = &sendCol[Ai[i] + Bi[i]]; 4830e3ece09SJunchao Zhang PetscInt nzLeft = E_NzLeft[i]; 4840e3ece09SJunchao Zhang PetscInt alen = Ai[i + 1] - Ai[i], blen = Bi[i + 1] - Bi[i]; 4850e3ece09SJunchao Zhang for (PetscInt j = 0; j < alen + blen; j++) { 4860e3ece09SJunchao Zhang if (j < nzLeft) { 4870e3ece09SJunchao Zhang buf[j] = garray1[Bj[Bi[i] + j]]; // left B, in global 4880e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { 4890e3ece09SJunchao Zhang buf[j] = Aj[Ai[i] + j - nzLeft] + cstart; // diag A, also in global 4900e3ece09SJunchao Zhang } else { 4910e3ece09SJunchao Zhang buf[j] = garray1[Bj[Bi[i] + j - alen]]; // right B, in global 4920e3ece09SJunchao Zhang } 4930e3ece09SJunchao Zhang } 4940e3ece09SJunchao Zhang } 4950e3ece09SJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(reduceSF, MPIU_INT, PETSC_MEMTYPE_HOST, sendCol, PETSC_MEMTYPE_HOST, recvCol, MPI_REPLACE)); 4960e3ece09SJunchao Zhang PetscCall(PetscSFReduceEnd(reduceSF, MPIU_INT, sendCol, recvCol, MPI_REPLACE)); 4970e3ece09SJunchao Zhang 4980e3ece09SJunchao Zhang // With recvCol[], we do a series of analysis to get i, j of Fd, Fo, and build plans to reduce nonzeros in recv buffers to Fd and Fo 4990e3ece09SJunchao Zhang PetscInt *recvRowPerm, *recvColSorted; 5000e3ece09SJunchao Zhang PetscInt *recvNzPerm, *recvNzPermSorted; 5010e3ece09SJunchao Zhang PetscCall(PetscMalloc4(recvRowCnt, &recvRowPerm, nroots, &recvColSorted, nroots, &recvNzPerm, nroots, &recvNzPermSorted)); 5020e3ece09SJunchao Zhang 5030e3ece09SJunchao Zhang for (PetscInt i = 0; i < nroots; i++) recvNzPerm[i] = i; // numbering all received nonzeros 5040e3ece09SJunchao Zhang for (PetscInt i = 0; i < recvRowCnt; i++) recvRowPerm[i] = i; // put up a permutation array, so that after sorting we know where to get a row in recvCol[] 5050e3ece09SJunchao Zhang PetscCall(PetscSortIntWithPermutation(recvRowCnt, irootloc, recvRowPerm)); // irootloc[] (owned by ownerSF) won't be changed 5060e3ece09SJunchao Zhang 5070e3ece09SJunchao Zhang // i[] array, nz are always easiest to compute 5087b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdi_h(NoInit("Fdi_h"), Fm + 1), Foi_h(NoInit("Foi_h"), Fm + 1); 5090e3ece09SJunchao Zhang MatRowMapType *Fdi, *Foi; 5100e3ece09SJunchao Zhang PetscInt FnzDups = 0, Fdnz = 0, FdnzDups = 0, Fonz = 0, FonzDups = 0; // nz (with or without dups) in F, Fd, Fo 5110e3ece09SJunchao Zhang PetscInt iter; 5120e3ece09SJunchao Zhang 5130e3ece09SJunchao Zhang Kokkos::deep_copy(Fdi_h, 0); // zero, as we will do 'val++' on them 5140e3ece09SJunchao Zhang Kokkos::deep_copy(Foi_h, 0); 5150e3ece09SJunchao Zhang Fdi = Fdi_h.data() + 1; // +1 for easy indexing in code below 5160e3ece09SJunchao Zhang Foi = Foi_h.data() + 1; 5170e3ece09SJunchao Zhang iter = 0; 5180e3ece09SJunchao Zhang while (iter < recvRowCnt) { // iter over received rows 5190e3ece09SJunchao Zhang PetscInt curRowIdx = irootloc[recvRowPerm[iter]]; 5200e3ece09SJunchao Zhang PetscInt dupRows = 1; // current row has this many contributing rows (of various sparsity patterns) 5210e3ece09SJunchao Zhang 5220e3ece09SJunchao Zhang while (iter + dupRows < recvRowCnt && irootloc[recvRowPerm[iter + dupRows]] == curRowIdx) dupRows++; 5230e3ece09SJunchao Zhang 5240e3ece09SJunchao Zhang // Copy column indices (and their permutation) of these rows into recvColSorted & recvNzPermSorted 5250e3ece09SJunchao Zhang PetscInt nz = 0; // nz (with dups) in the current row 5260e3ece09SJunchao Zhang PetscInt *jbuf = recvColSorted + FnzDups; 5270e3ece09SJunchao Zhang PetscInt *pbuf = recvNzPermSorted + FnzDups; 5280e3ece09SJunchao Zhang PetscInt *jbuf2 = jbuf; // temp pointers 5290e3ece09SJunchao Zhang PetscInt *pbuf2 = pbuf; 5300e3ece09SJunchao Zhang for (PetscInt d = 0; d < dupRows; d++) { 5310e3ece09SJunchao Zhang PetscInt i = recvRowPerm[iter + d]; 5320e3ece09SJunchao Zhang PetscInt len = recvRowLen[i + 1] - recvRowLen[i]; 5330e3ece09SJunchao Zhang PetscCall(PetscArraycpy(jbuf2, &recvCol[recvRowLen[i]], len)); 5340e3ece09SJunchao Zhang PetscCall(PetscArraycpy(pbuf2, &recvNzPerm[recvRowLen[i]], len)); 5350e3ece09SJunchao Zhang jbuf2 += len; 5360e3ece09SJunchao Zhang pbuf2 += len; 5370e3ece09SJunchao Zhang nz += len; 5380e3ece09SJunchao Zhang } 5390e3ece09SJunchao Zhang PetscCall(PetscIntSortSemiOrderedWithArray(nz, jbuf, pbuf)); // It could be improved with k-way merge sort, since the rows are already sorted 5400e3ece09SJunchao Zhang 5410e3ece09SJunchao Zhang // Scan column indices (in jbuf[0,nz), might have dups) of this row, and see how many go to Fd and how many go to Fo 5420e3ece09SJunchao Zhang PetscInt cur = 0; 5430e3ece09SJunchao Zhang while (cur < nz) { 5440e3ece09SJunchao Zhang PetscInt curColIdx = jbuf[cur]; 5450e3ece09SJunchao Zhang PetscInt dups = 1; 5460e3ece09SJunchao Zhang 5470e3ece09SJunchao Zhang while (cur + dups < nz && jbuf[cur + dups] == curColIdx) dups++; 5480e3ece09SJunchao Zhang if (curColIdx >= cstart && curColIdx < cend) { 5490e3ece09SJunchao Zhang Fdi[curRowIdx]++; 5500e3ece09SJunchao Zhang FdnzDups += dups; 5510e3ece09SJunchao Zhang } else { 5520e3ece09SJunchao Zhang Foi[curRowIdx]++; 5530e3ece09SJunchao Zhang FonzDups += dups; 5540e3ece09SJunchao Zhang } 5550e3ece09SJunchao Zhang cur += dups; 5560e3ece09SJunchao Zhang } 5570e3ece09SJunchao Zhang 5580e3ece09SJunchao Zhang FnzDups += nz; 5590e3ece09SJunchao Zhang iter += dupRows; // Move to next unique row 5600e3ece09SJunchao Zhang } 5610e3ece09SJunchao Zhang 5620e3ece09SJunchao Zhang Fdi = Fdi_h.data(); // restore Fdi, Foi and make them CSR 5630e3ece09SJunchao Zhang Foi = Foi_h.data(); 5640e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 5650e3ece09SJunchao Zhang Fdi[i + 1] += Fdi[i]; 5660e3ece09SJunchao Zhang Foi[i + 1] += Foi[i]; 5670e3ece09SJunchao Zhang } 5680e3ece09SJunchao Zhang Fdnz = Fdi[Fm]; 5690e3ece09SJunchao Zhang Fonz = Foi[Fm]; 5700e3ece09SJunchao Zhang PetscCall(PetscFree2(sendCol, recvCol)); 5710e3ece09SJunchao Zhang 5720e3ece09SJunchao Zhang // Allocate j, jmap, jperm for Fd and Fo 5737b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost Fdj_h(NoInit("Fdj_h"), Fdnz), Foj_h(NoInit("Foj_h"), Fonz); 5747b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdjmap_h(NoInit("Fdjmap_h"), Fdnz + 1), Fojmap_h(NoInit("Fojmap_h"), Fonz + 1); // +1 to make csr 5757b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdjperm_h(NoInit("Fdjperm_h"), FdnzDups), Fojperm_h(NoInit("Fojperm_h"), FonzDups); 5760e3ece09SJunchao Zhang MatColIdxType *Fdj = Fdj_h.data(), *Foj = Foj_h.data(); 5770e3ece09SJunchao Zhang MatRowMapType *Fdjmap = Fdjmap_h.data(), *Fojmap = Fojmap_h.data(); 5780e3ece09SJunchao Zhang MatRowMapType *Fdjperm = Fdjperm_h.data(), *Fojperm = Fojperm_h.data(); 5790e3ece09SJunchao Zhang 5800e3ece09SJunchao Zhang // Scan recvColSorted[] again, and fill j, jmap, jperm for Fd and Fo 5810e3ece09SJunchao Zhang Fdjmap[0] = 0; 5820e3ece09SJunchao Zhang Fojmap[0] = 0; 5830e3ece09SJunchao Zhang FnzDups = 0; 5840e3ece09SJunchao Zhang Fdnz = 0; 5850e3ece09SJunchao Zhang Fonz = 0; 5860e3ece09SJunchao Zhang iter = 0; // iter over received rows 5870e3ece09SJunchao Zhang while (iter < recvRowCnt) { 5880e3ece09SJunchao Zhang PetscInt curRowIdx = irootloc[recvRowPerm[iter]]; // current row idx 5890e3ece09SJunchao Zhang PetscInt dupRows = 1; // It has this many contributing rows (of various lengths) 5900e3ece09SJunchao Zhang PetscInt nz = 0; // nz (with dups) in the current row 5910e3ece09SJunchao Zhang 5920e3ece09SJunchao Zhang while (iter + dupRows < recvRowCnt && irootloc[recvRowPerm[iter + dupRows]] == curRowIdx) dupRows++; 5930e3ece09SJunchao Zhang for (PetscInt d = 0; d < dupRows; d++) { 5940e3ece09SJunchao Zhang PetscInt i = recvRowPerm[iter + d]; 5950e3ece09SJunchao Zhang nz += recvRowLen[i + 1] - recvRowLen[i]; 5960e3ece09SJunchao Zhang } 5970e3ece09SJunchao Zhang 5980e3ece09SJunchao Zhang PetscInt *jbuf = recvColSorted + FnzDups; 5990e3ece09SJunchao Zhang // Scan columns (in jbuf[0,nz) of this row, copy them and their permutation to j[] and jperm[] of Fd and Fo 6000e3ece09SJunchao Zhang PetscInt cur = 0; 6010e3ece09SJunchao Zhang while (cur < nz) { 6020e3ece09SJunchao Zhang PetscInt curColIdx = jbuf[cur]; 6030e3ece09SJunchao Zhang PetscInt dups = 1; 6040e3ece09SJunchao Zhang 6050e3ece09SJunchao Zhang while (cur + dups < nz && jbuf[cur + dups] == curColIdx) dups++; 6060e3ece09SJunchao Zhang if (curColIdx >= cstart && curColIdx < cend) { 6070e3ece09SJunchao Zhang Fdj[Fdnz] = curColIdx - cstart; // easily convert to local 6080e3ece09SJunchao Zhang Fdjmap[Fdnz + 1] = Fdjmap[Fdnz] + dups; 6090e3ece09SJunchao Zhang for (PetscInt j = 0; j < dups; j++) Fdjperm[Fdjmap[Fdnz] + j] = recvNzPermSorted[FnzDups + j]; 6100e3ece09SJunchao Zhang FdnzDups += dups; 6110e3ece09SJunchao Zhang Fdnz++; 6120e3ece09SJunchao Zhang } else { 6130e3ece09SJunchao Zhang Foj[Fonz] = curColIdx; // in global 6140e3ece09SJunchao Zhang Fojmap[Fonz + 1] = Fojmap[Fonz] + dups; 6150e3ece09SJunchao Zhang for (PetscInt j = 0; j < dups; j++) Fojperm[Fojmap[Fonz] + j] = recvNzPermSorted[FnzDups + j]; 6160e3ece09SJunchao Zhang FonzDups += dups; 6170e3ece09SJunchao Zhang Fonz++; 6180e3ece09SJunchao Zhang } 6190e3ece09SJunchao Zhang cur += dups; 6200e3ece09SJunchao Zhang FnzDups += dups; 6210e3ece09SJunchao Zhang } 6220e3ece09SJunchao Zhang iter += dupRows; // Move to next unique row 6230e3ece09SJunchao Zhang } 6240e3ece09SJunchao Zhang PetscCall(PetscFree4(recvRowPerm, recvColSorted, recvNzPerm, recvNzPermSorted)); 6250e3ece09SJunchao Zhang PetscCall(PetscFree5(sendRowLen, recvRowLen, sdisp, rdisp, reqs)); 6260e3ece09SJunchao Zhang 6270e3ece09SJunchao Zhang // Combine global column indices in garray1[] and Foj[] 6280e3ece09SJunchao Zhang PetscInt n2, *garray2; 6290e3ece09SJunchao Zhang 6300e3ece09SJunchao Zhang PetscCall(ReduceTwoSetsOfGlobalIndices(n1, garray1, Fonz, Foj, &n2, &garray2, map)); 6310e3ece09SJunchao Zhang mm->sf = reduceSF; 6327b8d4ba6SJunchao Zhang mm->leafBuf = MatScalarKokkosView(NoInit("leafBuf"), nleaves); 6337b8d4ba6SJunchao Zhang mm->rootBuf = MatScalarKokkosView(NoInit("rootBuf"), nroots); 634aaa8cc7dSPierre Jolivet mm->garray = garray2; // give ownership, so no free 6350e3ece09SJunchao Zhang mm->n = n2; 6360e3ece09SJunchao Zhang mm->E_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), E_NzLeft_h); 6370e3ece09SJunchao Zhang mm->Fdjmap = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdjmap_h); 6380e3ece09SJunchao Zhang mm->Fdjperm = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdjperm_h); 6390e3ece09SJunchao Zhang mm->Fojmap = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fojmap_h); 6400e3ece09SJunchao Zhang mm->Fojperm = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fojperm_h); 6410e3ece09SJunchao Zhang 6420e3ece09SJunchao Zhang // Output Fd and Fo in KokkosCsrMatrix format 6437b8d4ba6SJunchao Zhang MatScalarKokkosView Fda_d(NoInit("Fda_d"), Fdnz); 6440e3ece09SJunchao Zhang MatRowMapKokkosView Fdi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdi_h); 6450e3ece09SJunchao Zhang MatColIdxKokkosView Fdj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdj_h); 6467b8d4ba6SJunchao Zhang MatScalarKokkosView Foa_d(NoInit("Foa_d"), Fonz); 6470e3ece09SJunchao Zhang MatRowMapKokkosView Foi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foi_h); 6480e3ece09SJunchao Zhang MatColIdxKokkosView Foj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foj_h); 6490e3ece09SJunchao Zhang 6500e3ece09SJunchao Zhang PetscCallCXX(mm->Fd = KokkosCsrMatrix("Fd", Fm, cend - cstart, Fdnz, Fda_d, Fdi_d, Fdj_d)); 6510e3ece09SJunchao Zhang PetscCallCXX(mm->Fo = KokkosCsrMatrix("Fo", Fm, n2, Fonz, Foa_d, Foi_d, Foj_d)); // Fo's column size is n2, length of garray2[] 6520e3ece09SJunchao Zhang 6530e3ece09SJunchao Zhang // Compute kernel launch parameters in merging E 6540e3ece09SJunchao Zhang PetscInt teamSize, vectorLength, rowsPerTeam; 6550e3ece09SJunchao Zhang 6560e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 6570e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(Em, Enz, -1, teamSize, vectorLength, rowsPerTeam)); 6580e3ece09SJunchao Zhang mm->E_TeamSize = teamSize; 6590e3ece09SJunchao Zhang mm->E_VectorLength = vectorLength; 6600e3ece09SJunchao Zhang mm->E_RowsPerTeam = rowsPerTeam; 6610e3ece09SJunchao Zhang } else PetscCheck(reuse == MAT_REUSE_MATRIX, comm, PETSC_ERR_PLIB, "Unsupported MatReuse enum %d", reuse); 6620e3ece09SJunchao Zhang 6630e3ece09SJunchao Zhang // Handy aliases 6640e3ece09SJunchao Zhang auto &Aa = A.values; 6650e3ece09SJunchao Zhang auto &Ba = B.values; 6660e3ece09SJunchao Zhang const auto &Ai = A.graph.row_map; 6670e3ece09SJunchao Zhang const auto &Bi = B.graph.row_map; 6680e3ece09SJunchao Zhang const auto &E_NzLeft = mm->E_NzLeft; 6690e3ece09SJunchao Zhang auto &leafBuf = mm->leafBuf; 6700e3ece09SJunchao Zhang auto &rootBuf = mm->rootBuf; 6710e3ece09SJunchao Zhang PetscSF reduceSF = mm->sf; 6720e3ece09SJunchao Zhang PetscInt Em = A.numRows(); 6730e3ece09SJunchao Zhang PetscInt teamSize = mm->E_TeamSize; 6740e3ece09SJunchao Zhang PetscInt vectorLength = mm->E_VectorLength; 6750e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->E_RowsPerTeam; 6760e3ece09SJunchao Zhang PetscInt workSets = (Em + rowsPerTeam - 1) / rowsPerTeam; 6770e3ece09SJunchao Zhang 6780e3ece09SJunchao Zhang // Copy rows in A/B of E to leafBuf, then pass it to rootBuf 6790e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 680d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(PetscGetKokkosExecutionSpace(), workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 6810e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 6820e3ece09SJunchao Zhang PetscInt i = t.league_rank() * rowsPerTeam + k; // i-th row in F 6830e3ece09SJunchao Zhang if (i < Em) { 6840e3ece09SJunchao Zhang PetscInt disp = Ai(i) + Bi(i); 6850e3ece09SJunchao Zhang PetscInt alen = Ai(i + 1) - Ai(i); 6860e3ece09SJunchao Zhang PetscInt blen = Bi(i + 1) - Bi(i); 6870e3ece09SJunchao Zhang PetscInt nzleft = E_NzLeft(i); 6880e3ece09SJunchao Zhang 6890e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 6900e3ece09SJunchao Zhang MatScalar &val = leafBuf(disp + j); 6910e3ece09SJunchao Zhang if (j < nzleft) { // B left 6920e3ece09SJunchao Zhang val = Ba(Bi(i) + j); 6930e3ece09SJunchao Zhang } else if (j < nzleft + alen) { // diag A 6940e3ece09SJunchao Zhang val = Aa(Ai(i) + j - nzleft); 6950e3ece09SJunchao Zhang } else { // B right 6960e3ece09SJunchao Zhang val = Ba(Bi(i) + j - alen); 697f0e6e2d1SJunchao Zhang } 698f0e6e2d1SJunchao Zhang }); 699f0e6e2d1SJunchao Zhang } 700f0e6e2d1SJunchao Zhang }); 7010e3ece09SJunchao Zhang })); 7020e3ece09SJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(reduceSF, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, leafBuf.data(), PETSC_MEMTYPE_KOKKOS, rootBuf.data(), MPI_REPLACE)); 703f0e6e2d1SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 704f0e6e2d1SJunchao Zhang } 7050e3ece09SJunchao Zhang 706aaa8cc7dSPierre Jolivet // To finish MatMPIAIJKokkosReduce. 7070e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosReduceEnd(MPI_Comm comm, KokkosCsrMatrix A, KokkosCsrMatrix B, PetscInt cstart, PetscInt cend, const PetscInt *garray1, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AtB *mm) 7080e3ece09SJunchao Zhang { 7090e3ece09SJunchao Zhang auto &leafBuf = mm->leafBuf; 7100e3ece09SJunchao Zhang auto &rootBuf = mm->rootBuf; 7110e3ece09SJunchao Zhang auto &Fda = mm->Fd.values; 7120e3ece09SJunchao Zhang const auto &Fdjmap = mm->Fdjmap; 7130e3ece09SJunchao Zhang const auto &Fdjperm = mm->Fdjperm; 7140e3ece09SJunchao Zhang auto Fdnz = mm->Fd.nnz(); 7150e3ece09SJunchao Zhang auto &Foa = mm->Fo.values; 7160e3ece09SJunchao Zhang const auto &Fojmap = mm->Fojmap; 7170e3ece09SJunchao Zhang const auto &Fojperm = mm->Fojperm; 7180e3ece09SJunchao Zhang auto Fonz = mm->Fo.nnz(); 7190e3ece09SJunchao Zhang PetscSF reduceSF = mm->sf; 7200e3ece09SJunchao Zhang 721d326c3f1SJunchao Zhang PetscFunctionBegin; 7220e3ece09SJunchao Zhang PetscCall(PetscSFReduceEnd(reduceSF, MPIU_SCALAR, leafBuf.data(), rootBuf.data(), MPI_REPLACE)); 7230e3ece09SJunchao Zhang 7240e3ece09SJunchao Zhang // Reduce data in rootBuf to Fd and Fo 7250e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 726d326c3f1SJunchao Zhang Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, Fdnz), KOKKOS_LAMBDA(const MatRowMapType i) { 7270e3ece09SJunchao Zhang PetscScalar sum = 0.0; 7280e3ece09SJunchao Zhang for (MatRowMapType k = Fdjmap(i); k < Fdjmap(i + 1); k++) sum += rootBuf(Fdjperm(k)); 7290e3ece09SJunchao Zhang Fda(i) = sum; 7300e3ece09SJunchao Zhang })); 7310e3ece09SJunchao Zhang 7320e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 733d326c3f1SJunchao Zhang Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, Fonz), KOKKOS_LAMBDA(const MatRowMapType i) { 7340e3ece09SJunchao Zhang PetscScalar sum = 0.0; 7350e3ece09SJunchao Zhang for (MatRowMapType k = Fojmap(i); k < Fojmap(i + 1); k++) sum += rootBuf(Fojperm(k)); 7360e3ece09SJunchao Zhang Foa(i) = sum; 7370e3ece09SJunchao Zhang })); 7380e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 7390e3ece09SJunchao Zhang } 7400e3ece09SJunchao Zhang 7410e3ece09SJunchao Zhang /* 7420e3ece09SJunchao Zhang MatMPIAIJKokkosBcast - Bcast local rows of a MPIAIJKOKKOS matrix (E) to produce a local matrix (F, stored in mm) in split form 7430e3ece09SJunchao Zhang 7440e3ece09SJunchao Zhang This is a complex routine. It is essentially the MPIAIJKOKKOS counterpart of MatGetBrowsOfAoCols_MPIAIJ, but supports 7450e3ece09SJunchao Zhang device and involves various index mapping. 7460e3ece09SJunchao Zhang 7470e3ece09SJunchao Zhang In the given ownerSF, leaves correspond to rows in F, and roots correspond to rows in E. Roots may connect to multiple leaves. 7480e3ece09SJunchao Zhang Suppose F's j-th row is connected to a root identified by PetscSFNode (k,i), it means we need to bcast the i-th row of E on rank k 7490e3ece09SJunchao Zhang to j-th row of F. ownerSF is not an arbitrary SF, instead it is the Mvctx of another MPIAIJ matrix A that is able to perform A*E. 7500e3ece09SJunchao Zhang F has the same column layout as E. 7510e3ece09SJunchao Zhang 7520e3ece09SJunchao Zhang Conceptually F has global column indices. In this routine, we spit F into diagonal Fd and off-diagonal Fo. 753aaa8cc7dSPierre Jolivet Fd uses local column indices, which are easy to compute. We just need to subtract the "local column range start" from the global indices. 7540e3ece09SJunchao Zhang Fo had global column indices at first. We will reduce them into local ones. In doing that, we also take into account the global 7550e3ece09SJunchao Zhang column indices that E's off-diag block has. Let's say there are n1 such indices stored in garray1[]. We will reduce them along with 7560e3ece09SJunchao Zhang column indices in Fo and update Fo with local indices. 7570e3ece09SJunchao Zhang 7580e3ece09SJunchao Zhang Input Parameters: 7590e3ece09SJunchao Zhang + E - the MPIAIJKOKKOS matrix 7609c89aa79SPierre Jolivet . ownerSF - the ownership SF (insignificant in MAT_REUSE_MATRIX) 7610e3ece09SJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 7620e3ece09SJunchao Zhang - mm - to stash matproduct intermediate data structures 7630e3ece09SJunchao Zhang 7640e3ece09SJunchao Zhang Output Parameters: 7650e3ece09SJunchao Zhang + map[n1] - allocated by caller. It maps garray1[] to garray2[]. See more at ReduceTwoSetsOfGlobalIndices. 7660e3ece09SJunchao Zhang - mm - contains various info, such as garray2[], Fd, Fo, etc. 7670e3ece09SJunchao Zhang 7680e3ece09SJunchao Zhang Notes: 7690e3ece09SJunchao Zhang When reuse = MAT_REUSE_MATRIX, ownerSF, map are not significant. 7700e3ece09SJunchao Zhang The routine is provide in split-phase form MatMPIAIJKokkosBcastBegin/End() to provide computation/communication opportunities. 7710e3ece09SJunchao Zhang */ 7720e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosBcastBegin(Mat E, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AB *mm) 7730e3ece09SJunchao Zhang { 7740e3ece09SJunchao Zhang Mat_MPIAIJ *empi = static_cast<Mat_MPIAIJ *>(E->data); 7750e3ece09SJunchao Zhang Mat A = empi->A, B = empi->B; // diag and off-diag 7760e3ece09SJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos *>(A->spptr), *bkok = static_cast<Mat_SeqAIJKokkos *>(B->spptr); 7770e3ece09SJunchao Zhang PetscInt Em = E->rmap->n; // #local rows 7780e3ece09SJunchao Zhang MPI_Comm comm; 7790e3ece09SJunchao Zhang 7800e3ece09SJunchao Zhang PetscFunctionBegin; 7810e3ece09SJunchao Zhang PetscCallMPI(PetscObjectGetComm((PetscObject)E, &comm)); 7820e3ece09SJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 7830e3ece09SJunchao Zhang Mat_SeqAIJ *aseq = static_cast<Mat_SeqAIJ *>(A->data), *bseq = static_cast<Mat_SeqAIJ *>(B->data); 7840e3ece09SJunchao Zhang PetscInt n1 = B->cmap->n, *Ai = aseq->i, *Aj = aseq->j, *Bi = bseq->i, *Bj = bseq->j; 7850e3ece09SJunchao Zhang const PetscInt *garray1 = empi->garray; // its size is n1 7860e3ece09SJunchao Zhang PetscInt cstart, cend; 7870e3ece09SJunchao Zhang PetscSF bcastSF; 7880e3ece09SJunchao Zhang 7890e3ece09SJunchao Zhang PetscCall(MatGetOwnershipRangeColumn(E, &cstart, &cend)); 7900e3ece09SJunchao Zhang 7910e3ece09SJunchao Zhang // Count how many nonzeros of each row in E are in the left of the diag block [cstart,cend) 7927b8d4ba6SJunchao Zhang PetscIntKokkosViewHost E_NzLeft_h(NoInit("E_NzLeft_h"), Em), E_RowLen_h(NoInit("E_RowLen_h"), Em); 7930e3ece09SJunchao Zhang PetscInt *E_NzLeft = E_NzLeft_h.data(), *E_RowLen = E_RowLen_h.data(); 7940e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) { 7950e3ece09SJunchao Zhang const PetscInt *first, *last, *it; 7960e3ece09SJunchao Zhang PetscInt count, step; 7970e3ece09SJunchao Zhang // std::lower_bound(first,last,cstart), but need to use global column indices 7980e3ece09SJunchao Zhang first = Bj + Bi[i]; 7990e3ece09SJunchao Zhang last = Bj + Bi[i + 1]; 8000e3ece09SJunchao Zhang count = last - first; 8010e3ece09SJunchao Zhang while (count > 0) { 8020e3ece09SJunchao Zhang it = first; 8030e3ece09SJunchao Zhang step = count / 2; 8040e3ece09SJunchao Zhang it += step; 8050e3ece09SJunchao Zhang if (empi->garray[*it] < cstart) { // map local to global 8060e3ece09SJunchao Zhang first = ++it; 8070e3ece09SJunchao Zhang count -= step + 1; 8080e3ece09SJunchao Zhang } else count = step; 8090e3ece09SJunchao Zhang } 8100e3ece09SJunchao Zhang E_NzLeft[i] = first - (Bj + Bi[i]); 8110e3ece09SJunchao Zhang E_RowLen[i] = (Ai[i + 1] - Ai[i]) + (Bi[i + 1] - Bi[i]); 8120e3ece09SJunchao Zhang } 8130e3ece09SJunchao Zhang 8140e3ece09SJunchao Zhang // Compute row pointer Fi of F 8150e3ece09SJunchao Zhang PetscInt *Fi, Fm, Fnz; 8160e3ece09SJunchao Zhang PetscCall(PetscSFGetGraph(ownerSF, NULL, &Fm, NULL, NULL)); // Fm = #rows of F = nleaves of ownerSF 8170e3ece09SJunchao Zhang PetscCall(PetscMalloc1(Fm + 1, &Fi)); 8180e3ece09SJunchao Zhang Fi[0] = 0; 8190e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(ownerSF, MPIU_INT, PETSC_MEMTYPE_HOST, E_RowLen, PETSC_MEMTYPE_HOST, &Fi[1], MPI_REPLACE)); 8200e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(ownerSF, MPIU_INT, E_RowLen, &Fi[1], MPI_REPLACE)); 8210e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) Fi[i + 1] += Fi[i]; 8220e3ece09SJunchao Zhang Fnz = Fi[Fm]; 8230e3ece09SJunchao Zhang 8240e3ece09SJunchao Zhang // Build the real PetscSF for bcasting E rows (buffer to buffer) 8250e3ece09SJunchao Zhang const PetscMPIInt *iranks, *ranks; 8260e3ece09SJunchao Zhang const PetscInt *ioffset, *irootloc, *roffset; 8270e3ece09SJunchao Zhang PetscInt niranks, nranks, *sdisp, *rdisp; 8280e3ece09SJunchao Zhang MPI_Request *reqs; 8290e3ece09SJunchao Zhang PetscMPIInt tag; 8300e3ece09SJunchao Zhang 8310e3ece09SJunchao Zhang PetscCall(PetscSFGetLeafRanks(ownerSF, &niranks, &iranks, &ioffset, &irootloc)); // get leaf ranks referencing roots on this process 8320e3ece09SJunchao Zhang PetscCall(PetscSFGetRootRanks(ownerSF, &nranks, &ranks, &roffset, NULL, NULL)); // recv info 8330e3ece09SJunchao Zhang PetscCall(PetscMalloc3(niranks + 1, &sdisp, nranks, &rdisp, niranks + nranks, &reqs)); 8340e3ece09SJunchao Zhang 8350e3ece09SJunchao Zhang sdisp[0] = 0; // send displacement 8360e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { 8370e3ece09SJunchao Zhang sdisp[i + 1] = sdisp[i]; 8380e3ece09SJunchao Zhang for (PetscInt j = ioffset[i]; j < ioffset[i + 1]; j++) { 8390e3ece09SJunchao Zhang PetscInt r = irootloc[j]; // row to be sent 8400e3ece09SJunchao Zhang sdisp[i + 1] += E_RowLen[r]; 8410e3ece09SJunchao Zhang } 8420e3ece09SJunchao Zhang } 8430e3ece09SJunchao Zhang 8440e3ece09SJunchao Zhang PetscCallMPI(PetscCommGetNewTag(comm, &tag)); 8450e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) PetscCallMPI(MPI_Irecv(&rdisp[i], 1, MPIU_INT, ranks[i], tag, comm, &reqs[i])); 8460e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) PetscCallMPI(MPI_Isend(&sdisp[i], 1, MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i])); 8470e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(niranks + nranks, reqs, MPI_STATUSES_IGNORE)); 8480e3ece09SJunchao Zhang 8490e3ece09SJunchao Zhang PetscInt nleaves = Fnz; // leaves are nonzeros I will receive 8500e3ece09SJunchao Zhang PetscInt nroots = sdisp[niranks]; // roots are nonzeros I will send 8510e3ece09SJunchao Zhang PetscSFNode *iremote; // give ownership to bcastSF 8520e3ece09SJunchao Zhang PetscCall(PetscMalloc1(nleaves, &iremote)); 8530e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { // for each sender rank 8540e3ece09SJunchao Zhang PetscInt k = 0; 8550e3ece09SJunchao Zhang for (PetscInt j = Fi[roffset[i]]; j < Fi[roffset[i + 1]]; j++) { // I will receive rows [roffset[i], roffset[i+1]) of F from ranks[i] 8560e3ece09SJunchao Zhang iremote[j].rank = ranks[i]; 8570e3ece09SJunchao Zhang iremote[j].index = rdisp[i] + k; // their root location 8580e3ece09SJunchao Zhang k++; 8590e3ece09SJunchao Zhang } 8600e3ece09SJunchao Zhang } 8610e3ece09SJunchao Zhang PetscCall(PetscSFCreate(comm, &bcastSF)); 8620e3ece09SJunchao Zhang PetscCall(PetscSFSetGraph(bcastSF, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 8630e3ece09SJunchao Zhang PetscCall(PetscFree3(sdisp, rdisp, reqs)); 8640e3ece09SJunchao Zhang 8650e3ece09SJunchao Zhang // Build a plan (rowoffset, irootloc, E_NzLeft) to copy rows in E to rootdata of bcastSF in parallel 8667b8d4ba6SJunchao Zhang PetscIntKokkosViewHost rowoffset_h(NoInit("rowoffset_h"), ioffset[niranks] + 1); 8670e3ece09SJunchao Zhang PetscInt *rowoffset = rowoffset_h.data(); // for each entry (row) indicated in irootloc[], we calculate its destinate offset in copying 8680e3ece09SJunchao Zhang rowoffset[0] = 0; 8697b8d4ba6SJunchao Zhang for (PetscInt i = 0; i < ioffset[niranks]; i++) { rowoffset[i + 1] = rowoffset[i] + E_RowLen[irootloc[i]]; } 8700e3ece09SJunchao Zhang 8710e3ece09SJunchao Zhang // Copy (global) column indices of the needed rows in E to a buffer, and then bcast to Fj[] 8720e3ece09SJunchao Zhang PetscInt *jbuf, *Fj; 8730e3ece09SJunchao Zhang PetscCall(PetscMalloc2(nroots, &jbuf, Fnz, &Fj)); 8740e3ece09SJunchao Zhang for (PetscInt k = 0; k < ioffset[niranks]; k++) { 8750e3ece09SJunchao Zhang PetscInt i = irootloc[k]; // row to be copied 8760e3ece09SJunchao Zhang PetscInt *buf = &jbuf[rowoffset[k]]; 8770e3ece09SJunchao Zhang PetscInt nzLeft = E_NzLeft[i]; 8780e3ece09SJunchao Zhang PetscInt alen = Ai[i + 1] - Ai[i], blen = Bi[i + 1] - Bi[i]; 8790e3ece09SJunchao Zhang for (PetscInt j = 0; j < alen + blen; j++) { 8800e3ece09SJunchao Zhang if (j < nzLeft) { 8810e3ece09SJunchao Zhang buf[j] = empi->garray[Bj[Bi[i] + j]]; // left B, in global 8820e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { 8830e3ece09SJunchao Zhang buf[j] = Aj[Ai[i] + j - nzLeft] + cstart; // diag A, also in global 8840e3ece09SJunchao Zhang } else { 8850e3ece09SJunchao Zhang buf[j] = empi->garray[Bj[Bi[i] + j - alen]]; // right B, in global 8860e3ece09SJunchao Zhang } 8870e3ece09SJunchao Zhang } 8880e3ece09SJunchao Zhang } 8890e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(bcastSF, MPIU_INT, PETSC_MEMTYPE_HOST, jbuf, PETSC_MEMTYPE_HOST, Fj, MPI_REPLACE)); 8900e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(bcastSF, MPIU_INT, jbuf, Fj, MPI_REPLACE)); 8910e3ece09SJunchao Zhang 8920e3ece09SJunchao Zhang // Build a plan (i.e., F_NzLeft) to split F into Fd and Fo 8937b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdi_h(NoInit("Fdi_h"), Fm + 1), Foi_h(NoInit("Foi_h"), Fm + 1); // row pointer of Fd, Fo 8947b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost F_NzLeft_h(NoInit("F_NzLeft_h"), Fm); // split each row of F into Left, Diag, Right. We only need to record #nz in Left and Diag. 8950e3ece09SJunchao Zhang MatRowMapType *Fdi = Fdi_h.data(), *Foi = Foi_h.data(); 8960e3ece09SJunchao Zhang MatColIdxType *F_NzLeft = F_NzLeft_h.data(); 8970e3ece09SJunchao Zhang 8980e3ece09SJunchao Zhang Fdi[0] = Foi[0] = 0; 8990e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9000e3ece09SJunchao Zhang PetscInt *first, *last, *lb1, *lb2; 9010e3ece09SJunchao Zhang // cut the row into: Left, [cstart, cend), Right 9020e3ece09SJunchao Zhang first = Fj + Fi[i]; 9030e3ece09SJunchao Zhang last = Fj + Fi[i + 1]; 9040e3ece09SJunchao Zhang lb1 = std::lower_bound(first, last, cstart); 9050e3ece09SJunchao Zhang F_NzLeft[i] = lb1 - first; 9060e3ece09SJunchao Zhang lb2 = std::lower_bound(first, last, cend); 9070e3ece09SJunchao Zhang Fdi[i + 1] = lb2 - lb1; // row i length in Fdi 9080e3ece09SJunchao Zhang Foi[i + 1] = (Fi[i + 1] - Fi[i]) - Fdi[i + 1]; // row i length in Foi 9090e3ece09SJunchao Zhang } 9100e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9110e3ece09SJunchao Zhang Fdi[i + 1] += Fdi[i]; 9120e3ece09SJunchao Zhang Foi[i + 1] += Foi[i]; 9130e3ece09SJunchao Zhang } 9140e3ece09SJunchao Zhang 9150e3ece09SJunchao Zhang // Fill Fdj[] and Foj[], i.e., columns of Fd and Fo. Fdj[] are local, but Foj[] are not yet. 9160e3ece09SJunchao Zhang PetscInt Fdnz = Fdi[Fm], Fonz = Foi[Fm]; 9177b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost Fdj_h(NoInit("Fdj_h"), Fdnz), Foj_h(NoInit("Foj_h"), Fonz); 9180e3ece09SJunchao Zhang MatColIdxType *Fdj = Fdj_h.data(), *Foj = Foj_h.data(), gid; 9190e3ece09SJunchao Zhang 9200e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9210e3ece09SJunchao Zhang PetscInt nzLeft = F_NzLeft[i]; 9220e3ece09SJunchao Zhang PetscInt len = Fdi[i + 1] - Fdi[i]; // diag row len 9230e3ece09SJunchao Zhang for (PetscInt j = 0; j < Fi[i + 1] - Fi[i]; j++) { 9240e3ece09SJunchao Zhang gid = Fj[Fi[i] + j]; 9250e3ece09SJunchao Zhang if (j < nzLeft) { // left, in global 9260e3ece09SJunchao Zhang Foj[Foi[i] + j] = gid; 9270e3ece09SJunchao Zhang } else if (j < nzLeft + len) { // diag, in local 9280e3ece09SJunchao Zhang Fdj[Fdi[i] + j - nzLeft] = gid - cstart; 9290e3ece09SJunchao Zhang } else { // right, in global 9300e3ece09SJunchao Zhang Foj[Foi[i] + j - len] = gid; 9310e3ece09SJunchao Zhang } 9320e3ece09SJunchao Zhang } 9330e3ece09SJunchao Zhang } 9340e3ece09SJunchao Zhang PetscCall(PetscFree2(jbuf, Fj)); 9350e3ece09SJunchao Zhang PetscCall(PetscFree(Fi)); 9360e3ece09SJunchao Zhang 9370e3ece09SJunchao Zhang // Reduce global indices in Foj[] and garray1[] into local ones 9380e3ece09SJunchao Zhang PetscInt n2, *garray2; 9390e3ece09SJunchao Zhang PetscCall(ReduceTwoSetsOfGlobalIndices(n1, garray1, Fonz, Foj, &n2, &garray2, map)); 9400e3ece09SJunchao Zhang 9410e3ece09SJunchao Zhang // Record the plans built above, for reuse 9420e3ece09SJunchao Zhang PetscIntKokkosViewHost tmp(const_cast<PetscInt *>(irootloc), ioffset[niranks]); // irootloc[] is owned by ownerSF. We create a copy for safety 9437b8d4ba6SJunchao Zhang PetscIntKokkosViewHost irootloc_h(NoInit("irootloc_h"), ioffset[niranks]); 9440e3ece09SJunchao Zhang Kokkos::deep_copy(irootloc_h, tmp); 9450e3ece09SJunchao Zhang mm->sf = bcastSF; 9460e3ece09SJunchao Zhang mm->E_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), E_NzLeft_h); 9470e3ece09SJunchao Zhang mm->F_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), F_NzLeft_h); 9480e3ece09SJunchao Zhang mm->irootloc = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), irootloc_h); 9490e3ece09SJunchao Zhang mm->rowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), rowoffset_h); 9507b8d4ba6SJunchao Zhang mm->rootBuf = MatScalarKokkosView(NoInit("rootBuf"), nroots); 9517b8d4ba6SJunchao Zhang mm->leafBuf = MatScalarKokkosView(NoInit("leafBuf"), nleaves); 9520e3ece09SJunchao Zhang mm->garray = garray2; 9530e3ece09SJunchao Zhang mm->n = n2; 9540e3ece09SJunchao Zhang 9550e3ece09SJunchao Zhang // Output Fd and Fo in KokkosCsrMatrix format 9567b8d4ba6SJunchao Zhang MatScalarKokkosView Fda_d(NoInit("Fda_d"), Fdnz), Foa_d(NoInit("Foa_d"), Fonz); 9570e3ece09SJunchao Zhang MatRowMapKokkosView Fdi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdi_h); 9580e3ece09SJunchao Zhang MatColIdxKokkosView Fdj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdj_h); 9590e3ece09SJunchao Zhang MatRowMapKokkosView Foi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foi_h); 9600e3ece09SJunchao Zhang MatColIdxKokkosView Foj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foj_h); 9610e3ece09SJunchao Zhang 9620e3ece09SJunchao Zhang PetscCallCXX(mm->Fd = KokkosCsrMatrix("Fd", Fm, cend - cstart, Fdnz, Fda_d, Fdi_d, Fdj_d)); 9630e3ece09SJunchao Zhang PetscCallCXX(mm->Fo = KokkosCsrMatrix("Fo", Fm, n2, Fonz, Foa_d, Foi_d, Foj_d)); 9640e3ece09SJunchao Zhang 9650e3ece09SJunchao Zhang // Compute kernel launch parameters in merging E or splitting F 9660e3ece09SJunchao Zhang PetscInt teamSize, vectorLength, rowsPerTeam; 9670e3ece09SJunchao Zhang 9680e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 9690e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(mm->irootloc.extent(0), mm->rootBuf.extent(0), -1, teamSize, vectorLength, rowsPerTeam)); 9700e3ece09SJunchao Zhang mm->E_TeamSize = teamSize; 9710e3ece09SJunchao Zhang mm->E_VectorLength = vectorLength; 9720e3ece09SJunchao Zhang mm->E_RowsPerTeam = rowsPerTeam; 9730e3ece09SJunchao Zhang 9740e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 9750e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(Fm, Fnz, -1, teamSize, vectorLength, rowsPerTeam)); 9760e3ece09SJunchao Zhang mm->F_TeamSize = teamSize; 9770e3ece09SJunchao Zhang mm->F_VectorLength = vectorLength; 9780e3ece09SJunchao Zhang mm->F_RowsPerTeam = rowsPerTeam; 9790e3ece09SJunchao Zhang } else PetscCheck(reuse == MAT_REUSE_MATRIX, comm, PETSC_ERR_PLIB, "Unsupported MatReuse enum %d", reuse); 9800e3ece09SJunchao Zhang 9810e3ece09SJunchao Zhang // Sync E's value to device 9820e3ece09SJunchao Zhang akok->a_dual.sync_device(); 9830e3ece09SJunchao Zhang bkok->a_dual.sync_device(); 9840e3ece09SJunchao Zhang 9850e3ece09SJunchao Zhang // Handy aliases 9860e3ece09SJunchao Zhang const auto &Aa = akok->a_dual.view_device(); 9870e3ece09SJunchao Zhang const auto &Ba = bkok->a_dual.view_device(); 9880e3ece09SJunchao Zhang const auto &Ai = akok->i_dual.view_device(); 9890e3ece09SJunchao Zhang const auto &Bi = bkok->i_dual.view_device(); 9900e3ece09SJunchao Zhang 9910e3ece09SJunchao Zhang // Fetch the plans 9920e3ece09SJunchao Zhang PetscIntKokkosView &E_NzLeft = mm->E_NzLeft; 9930e3ece09SJunchao Zhang PetscSF &bcastSF = mm->sf; 9940e3ece09SJunchao Zhang MatScalarKokkosView &rootBuf = mm->rootBuf; 9950e3ece09SJunchao Zhang MatScalarKokkosView &leafBuf = mm->leafBuf; 9960e3ece09SJunchao Zhang PetscIntKokkosView &irootloc = mm->irootloc; 9970e3ece09SJunchao Zhang PetscIntKokkosView &rowoffset = mm->rowoffset; 9980e3ece09SJunchao Zhang 9990e3ece09SJunchao Zhang PetscInt teamSize = mm->E_TeamSize; 10000e3ece09SJunchao Zhang PetscInt vectorLength = mm->E_VectorLength; 10010e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->E_RowsPerTeam; 10020e3ece09SJunchao Zhang PetscInt workSets = (irootloc.extent(0) + rowsPerTeam - 1) / rowsPerTeam; 10030e3ece09SJunchao Zhang 10040e3ece09SJunchao Zhang // Copy rows in A/B of E to rootBuf, then bcast it to leafBuf 10050e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 1006d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(PetscGetKokkosExecutionSpace(), workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 10070e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 10080e3ece09SJunchao Zhang size_t r = t.league_rank() * rowsPerTeam + k; // r-th entry in irootloc[] 10090e3ece09SJunchao Zhang if (r < irootloc.extent(0)) { 10100e3ece09SJunchao Zhang PetscInt i = irootloc(r); // row i of E 10110e3ece09SJunchao Zhang PetscInt disp = rowoffset(r); 10120e3ece09SJunchao Zhang PetscInt alen = Ai(i + 1) - Ai(i); 10130e3ece09SJunchao Zhang PetscInt blen = Bi(i + 1) - Bi(i); 10140e3ece09SJunchao Zhang PetscInt nzleft = E_NzLeft(i); 10150e3ece09SJunchao Zhang 10160e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 10170e3ece09SJunchao Zhang if (j < nzleft) { // B left 10180e3ece09SJunchao Zhang rootBuf(disp + j) = Ba(Bi(i) + j); 10190e3ece09SJunchao Zhang } else if (j < nzleft + alen) { // diag A 10200e3ece09SJunchao Zhang rootBuf(disp + j) = Aa(Ai(i) + j - nzleft); 10210e3ece09SJunchao Zhang } else { // B right 10220e3ece09SJunchao Zhang rootBuf(disp + j) = Ba(Bi(i) + j - alen); 10230e3ece09SJunchao Zhang } 10240e3ece09SJunchao Zhang }); 10250e3ece09SJunchao Zhang } 10260e3ece09SJunchao Zhang }); 10270e3ece09SJunchao Zhang })); 10280e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(bcastSF, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, rootBuf.data(), PETSC_MEMTYPE_KOKKOS, leafBuf.data(), MPI_REPLACE)); 10290e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 10300e3ece09SJunchao Zhang } 10310e3ece09SJunchao Zhang 10320e3ece09SJunchao Zhang // To finish MatMPIAIJKokkosBcast. 10330e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosBcastEnd(Mat E, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AB *mm) 10340e3ece09SJunchao Zhang { 10350e3ece09SJunchao Zhang PetscFunctionBegin; 10360e3ece09SJunchao Zhang const auto &Fd = mm->Fd; 10370e3ece09SJunchao Zhang const auto &Fo = mm->Fo; 10380e3ece09SJunchao Zhang const auto &Fdi = Fd.graph.row_map; 10390e3ece09SJunchao Zhang const auto &Foi = Fo.graph.row_map; 10400e3ece09SJunchao Zhang auto &Fda = Fd.values; 10410e3ece09SJunchao Zhang auto &Foa = Fo.values; 10420e3ece09SJunchao Zhang auto Fm = Fd.numRows(); 10430e3ece09SJunchao Zhang 10440e3ece09SJunchao Zhang PetscIntKokkosView &F_NzLeft = mm->F_NzLeft; 10450e3ece09SJunchao Zhang PetscSF &bcastSF = mm->sf; 10460e3ece09SJunchao Zhang MatScalarKokkosView &rootBuf = mm->rootBuf; 10470e3ece09SJunchao Zhang MatScalarKokkosView &leafBuf = mm->leafBuf; 10480e3ece09SJunchao Zhang PetscInt teamSize = mm->F_TeamSize; 10490e3ece09SJunchao Zhang PetscInt vectorLength = mm->F_VectorLength; 10500e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->F_RowsPerTeam; 10510e3ece09SJunchao Zhang PetscInt workSets = (Fm + rowsPerTeam - 1) / rowsPerTeam; 10520e3ece09SJunchao Zhang 10530e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(bcastSF, MPIU_SCALAR, rootBuf.data(), leafBuf.data(), MPI_REPLACE)); 10540e3ece09SJunchao Zhang 10550e3ece09SJunchao Zhang // Update Fda and Foa with new data in leafBuf (as if it is Fa) 10560e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 1057d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(PetscGetKokkosExecutionSpace(), workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 10580e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 10590e3ece09SJunchao Zhang PetscInt i = t.league_rank() * rowsPerTeam + k; // i-th row in F 10600e3ece09SJunchao Zhang if (i < Fm) { 10610e3ece09SJunchao Zhang PetscInt nzLeft = F_NzLeft(i); 10620e3ece09SJunchao Zhang PetscInt alen = Fdi(i + 1) - Fdi(i); 10630e3ece09SJunchao Zhang PetscInt blen = Foi(i + 1) - Foi(i); 10640e3ece09SJunchao Zhang PetscInt Fii = Fdi(i) + Foi(i); 10650e3ece09SJunchao Zhang 10660e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 10670e3ece09SJunchao Zhang PetscScalar val = leafBuf(Fii + j); 10680e3ece09SJunchao Zhang if (j < nzLeft) { // left 10690e3ece09SJunchao Zhang Foa(Foi(i) + j) = val; 10700e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { // diag 10710e3ece09SJunchao Zhang Fda(Fdi(i) + j - nzLeft) = val; 10720e3ece09SJunchao Zhang } else { // right 10730e3ece09SJunchao Zhang Foa(Foi(i) + j - alen) = val; 10740e3ece09SJunchao Zhang } 10750e3ece09SJunchao Zhang }); 10760e3ece09SJunchao Zhang } 10770e3ece09SJunchao Zhang }); 10780e3ece09SJunchao Zhang })); 10790e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 10800e3ece09SJunchao Zhang } 10810e3ece09SJunchao Zhang 10820e3ece09SJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AtB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AtB *mm) 10830e3ece09SJunchao Zhang { 10840e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 10850e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 10860e3ece09SJunchao Zhang KokkosCsrMatrix Adt, Aot, Ad, Ao, Bd, Bo; 10870e3ece09SJunchao Zhang PetscInt cstart, cend; 10880e3ece09SJunchao Zhang MPI_Comm comm; 10890e3ece09SJunchao Zhang 10900e3ece09SJunchao Zhang PetscFunctionBegin; 10910e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 10920e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->A, &Adt)); 10930e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->B, &Aot)); 10940e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 10950e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 10960e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 10970e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 10980e3ece09SJunchao Zhang 10990e3ece09SJunchao Zhang // TODO: add command line options to select spgemm algorithms 11000e3ece09SJunchao Zhang auto spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_DEFAULT; // default is TPL if enabled, otherwise KK 11010e3ece09SJunchao Zhang 11020e3ece09SJunchao Zhang // CUDA-10.2's spgemm has bugs. We prefer the SpGEMMreuse APIs introduced in cuda-11.4 11030e3ece09SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 11040e3ece09SJunchao Zhang #if PETSC_PKG_CUDA_VERSION_LT(11, 4, 0) 11050e3ece09SJunchao Zhang spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_KK; 1106f0e6e2d1SJunchao Zhang #endif 11070e3ece09SJunchao Zhang #endif 11080e3ece09SJunchao Zhang 11090e3ece09SJunchao Zhang PetscCallCXX(mm->kh1.create_spgemm_handle(spgemm_alg)); 11100e3ece09SJunchao Zhang PetscCallCXX(mm->kh2.create_spgemm_handle(spgemm_alg)); 11110e3ece09SJunchao Zhang PetscCallCXX(mm->kh3.create_spgemm_handle(spgemm_alg)); 11120e3ece09SJunchao Zhang PetscCallCXX(mm->kh4.create_spgemm_handle(spgemm_alg)); 11130e3ece09SJunchao Zhang 11140e3ece09SJunchao Zhang // Aot * (B's diag + B's off-diag) 11150e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh3, Aot, false, Bd, false, mm->C3)); 11160e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh4, Aot, false, Bo, false, mm->C4)); 11170e3ece09SJunchao Zhang // KK spgemm_symbolic() only populates the result's row map, but not its columns. 11180e3ece09SJunchao Zhang // TODO: Remove the fake spgemm_numeric() after KK fixed this problem. 11190e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Aot, false, Bd, false, mm->C3)); 11200e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Aot, false, Bo, false, mm->C4)); 11210e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 1122d326c3f1SJunchao Zhang 11230e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C3)); 11240e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C4)); 11250e3ece09SJunchao Zhang #endif 11260e3ece09SJunchao Zhang 11270e3ece09SJunchao Zhang // Reduce E (i.e., C3 and C4)'s rows to form F, and overlap the communication 11287b8d4ba6SJunchao Zhang PetscIntKokkosViewHost map_h(NoInit("map_h"), bmpi->B->cmap->n); 11290e3ece09SJunchao Zhang PetscCall(MatGetOwnershipRangeColumn(B, &cstart, &cend)); 11300e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceBegin(comm, mm->C3, mm->C4, cstart, cend, bmpi->garray, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 11310e3ece09SJunchao Zhang 11320e3ece09SJunchao Zhang // Adt * (B's diag + B's off-diag) 11330e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh1, Adt, false, Bd, false, mm->C1)); 11340e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 11350e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Adt, false, Bd, false, mm->C1)); 11360e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 11370e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 11380e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C1)); 11390e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C2_mid)); 11400e3ece09SJunchao Zhang #endif 11410e3ece09SJunchao Zhang 11420e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceEnd(comm, mm->C3, mm->C4, cstart, cend, bmpi->garray, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 11430e3ece09SJunchao Zhang 11440e3ece09SJunchao Zhang // Create C2, which shares a, i arrays with C2_mid, but with new column indices and potentially larger column size 11457b8d4ba6SJunchao Zhang MatColIdxKokkosView oldj = mm->C2_mid.graph.entries, newj(NoInit("j"), oldj.extent(0)); 11460e3ece09SJunchao Zhang PetscIntKokkosView map = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), map_h); 1147d326c3f1SJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, oldj.extent(0)), KOKKOS_LAMBDA(const PetscInt i) { newj(i) = map(oldj(i)); })); 11480e3ece09SJunchao Zhang PetscCallCXX(mm->C2 = KokkosCsrMatrix("C2", mm->C2_mid.numRows(), mm->n /*new column size*/, mm->C2_mid.nnz(), mm->C2_mid.values, mm->C2_mid.graph.row_map, newj)); 11490e3ece09SJunchao Zhang 11500e3ece09SJunchao Zhang // C = (C1+Fd, C2+Fo) 11510e3ece09SJunchao Zhang PetscCallCXX(mm->kh1.create_spadd_handle(true)); // C1, Fd are sorted 11520e3ece09SJunchao Zhang PetscCallCXX(mm->kh2.create_spadd_handle(true)); // C2, Fo are sorted 11530e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh1, mm->C1, mm->Fd, mm->Cd)); 11540e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh2, mm->C2, mm->Fo, mm->Co)); 11550e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->Fd, mm->Cd)); 11560e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->Fo, mm->Co)); 11570e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 11580e3ece09SJunchao Zhang } 11590e3ece09SJunchao Zhang 11600e3ece09SJunchao Zhang static PetscErrorCode MatProductNumeric_MPIAIJKokkos_AtB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AtB *mm) 11610e3ece09SJunchao Zhang { 11620e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 11630e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 11640e3ece09SJunchao Zhang KokkosCsrMatrix Adt, Aot, Bd, Bo; 11650e3ece09SJunchao Zhang MPI_Comm comm; 11660e3ece09SJunchao Zhang 11670e3ece09SJunchao Zhang PetscFunctionBegin; 11680e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 11690e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->A, &Adt)); 11700e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->B, &Aot)); 11710e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 11720e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 11730e3ece09SJunchao Zhang 11740e3ece09SJunchao Zhang // Aot * (B's diag + B's off-diag) 11750e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Aot, false, Bd, false, mm->C3)); 11760e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Aot, false, Bo, false, mm->C4)); 11770e3ece09SJunchao Zhang 11780e3ece09SJunchao Zhang // Reduce E (i.e., C3 and C4)'s rows to form F, and overlap the communication 11790e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceBegin(comm, mm->C3, mm->C4, 0, 0, NULL, NULL, MAT_REUSE_MATRIX, NULL, mm)); 11800e3ece09SJunchao Zhang 11810e3ece09SJunchao Zhang // Adt * (B's diag + B's off-diag) 11820e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Adt, false, Bd, false, mm->C1)); 11830e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 11840e3ece09SJunchao Zhang 11850e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceEnd(comm, mm->C3, mm->C4, 0, 0, NULL, NULL, MAT_REUSE_MATRIX, NULL, mm)); 11860e3ece09SJunchao Zhang 11870e3ece09SJunchao Zhang // C = (C1+Fd, C2+Fo) 11880e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->Fd, mm->Cd)); 11890e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->Fo, mm->Co)); 11900e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 11910e3ece09SJunchao Zhang } 1192f0e6e2d1SJunchao Zhang 1193076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AB - AB flavor of MatProductSymbolic_MPIAIJKokkos 1194076ba34aSJunchao Zhang 1195076ba34aSJunchao Zhang Input Parameters: 1196076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 1197076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 1198076ba34aSJunchao Zhang . B - an MPIAIJKOKKOS matrix 1199076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data when computing AB. Persist from symbolic to numeric operations. 1200076ba34aSJunchao Zhang */ 1201d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AB *mm) 1202d71ae5a4SJacob Faibussowitsch { 12030e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 12040e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 12050e3ece09SJunchao Zhang KokkosCsrMatrix Ad, Ao, Bd, Bo; 1206076ba34aSJunchao Zhang 1207076ba34aSJunchao Zhang PetscFunctionBegin; 12080e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 12090e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 12100e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 12110e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 12120e3ece09SJunchao Zhang 12130e3ece09SJunchao Zhang // TODO: add command line options to select spgemm algorithms 12140e3ece09SJunchao Zhang auto spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_DEFAULT; // default is TPL if enabled, otherwise KK 12150e3ece09SJunchao Zhang 12160e3ece09SJunchao Zhang // CUDA-10.2's spgemm has bugs. We prefer the SpGEMMreuse APIs introduced in cuda-11.4 12170e3ece09SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 12180e3ece09SJunchao Zhang #if PETSC_PKG_CUDA_VERSION_LT(11, 4, 0) 12190e3ece09SJunchao Zhang spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_KK; 12200e3ece09SJunchao Zhang #endif 1221f0e6e2d1SJunchao Zhang #endif 1222f0e6e2d1SJunchao Zhang 12230e3ece09SJunchao Zhang mm->kh1.create_spgemm_handle(spgemm_alg); 12240e3ece09SJunchao Zhang mm->kh2.create_spgemm_handle(spgemm_alg); 12250e3ece09SJunchao Zhang mm->kh3.create_spgemm_handle(spgemm_alg); 12260e3ece09SJunchao Zhang mm->kh4.create_spgemm_handle(spgemm_alg); 1227076ba34aSJunchao Zhang 12280e3ece09SJunchao Zhang // Bcast B's rows to form F, and overlap the communication 12297b8d4ba6SJunchao Zhang PetscIntKokkosViewHost map_h(NoInit("map_h"), bmpi->B->cmap->n); 12300e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastBegin(B, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1231076ba34aSJunchao Zhang 12320e3ece09SJunchao Zhang // A's diag * (B's diag + B's off-diag) 12330e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh1, Ad, false, Bd, false, mm->C1)); 12340e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); // C2 aliases with C2_mid, except with new column indices 12350e3ece09SJunchao Zhang // KK spgemm_symbolic() only populates the result's row map, but not its columns. 12360e3ece09SJunchao Zhang // TODO: Remove the fake spgemm_numeric() after KK fixed this problem. 12370e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Ad, false, Bd, false, mm->C1)); 12380e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); 12390e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 12400e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C1)); 12410e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C2_mid)); 12420e3ece09SJunchao Zhang #endif 1243076ba34aSJunchao Zhang 12440e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastEnd(B, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1245076ba34aSJunchao Zhang 12460e3ece09SJunchao Zhang // A's off-diag * (F's diag + F's off-diag) 12470e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 12480e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 12490e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 12500e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 12510e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 12520e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C3)); 12530e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C4)); 12540e3ece09SJunchao Zhang #endif 1255076ba34aSJunchao Zhang 12560e3ece09SJunchao Zhang // Create C2, which shares a, i arrays with C2_mid, but with new column indices and potentially larger column size 12577b8d4ba6SJunchao Zhang MatColIdxKokkosView oldj = mm->C2_mid.graph.entries, newj(NoInit("j"), oldj.extent(0)); 12580e3ece09SJunchao Zhang PetscIntKokkosView map = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), map_h); 1259d326c3f1SJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, oldj.extent(0)), KOKKOS_LAMBDA(const PetscInt i) { newj(i) = map(oldj(i)); })); 12600e3ece09SJunchao Zhang mm->C2 = KokkosCsrMatrix("C2", mm->C2_mid.numRows(), mm->n /*new column size*/, mm->C2_mid.nnz(), mm->C2_mid.values, mm->C2_mid.graph.row_map, newj); 12610e3ece09SJunchao Zhang 12620e3ece09SJunchao Zhang // C = (Cd, Co) = (C1+C3, C2+C4) 12630e3ece09SJunchao Zhang mm->kh1.create_spadd_handle(true); // C1, C3 are sorted 12640e3ece09SJunchao Zhang mm->kh2.create_spadd_handle(true); // C2, C4 are sorted 12650e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh1, mm->C1, mm->C3, mm->Cd)); 12660e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh2, mm->C2, mm->C4, mm->Co)); 12670e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->C3, mm->Cd)); 12680e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->C4, mm->Co)); 12693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1270076ba34aSJunchao Zhang } 1271076ba34aSJunchao Zhang 12720e3ece09SJunchao Zhang static PetscErrorCode MatProductNumeric_MPIAIJKokkos_AB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AB *mm) 1273d71ae5a4SJacob Faibussowitsch { 12740e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 12750e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 12760e3ece09SJunchao Zhang KokkosCsrMatrix Ad, Ao, Bd, Bo; 1277076ba34aSJunchao Zhang 1278076ba34aSJunchao Zhang PetscFunctionBegin; 12790e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 12800e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 12810e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 12820e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 1283076ba34aSJunchao Zhang 12840e3ece09SJunchao Zhang // Bcast B's rows to form F, and overlap the communication 12850e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastBegin(B, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1286076ba34aSJunchao Zhang 12870e3ece09SJunchao Zhang // A's diag * (B's diag + B's off-diag) 12880e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Ad, false, Bd, false, mm->C1)); 12890e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); 1290076ba34aSJunchao Zhang 12910e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastEnd(B, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1292076ba34aSJunchao Zhang 12930e3ece09SJunchao Zhang // A's off-diag * (F's diag + F's off-diag) 12940e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 12950e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 12960e3ece09SJunchao Zhang 12970e3ece09SJunchao Zhang // C = (Cd, Co) = (C1+C3, C2+C4) 12980e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->C3, mm->Cd)); 12990e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->C4, mm->Co)); 13003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1301076ba34aSJunchao Zhang } 1302076ba34aSJunchao Zhang 130366976f2fSJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJKokkos(Mat C) 1304d71ae5a4SJacob Faibussowitsch { 13050e3ece09SJunchao Zhang Mat_MPIAIJ *cmpi = static_cast<Mat_MPIAIJ *>(C->data); 13060e3ece09SJunchao Zhang Mat_Product *product; 13070e3ece09SJunchao Zhang MatProductData_MPIAIJKokkos *pdata; 1308076ba34aSJunchao Zhang MatProductType ptype; 13090e3ece09SJunchao Zhang Mat A, B; 1310076ba34aSJunchao Zhang 1311076ba34aSJunchao Zhang PetscFunctionBegin; 13120e3ece09SJunchao Zhang MatCheckProduct(C, 1); // make sure C is a product 13130e3ece09SJunchao Zhang product = C->product; 13140e3ece09SJunchao Zhang pdata = static_cast<MatProductData_MPIAIJKokkos *>(product->data); 1315076ba34aSJunchao Zhang ptype = product->type; 1316076ba34aSJunchao Zhang A = product->A; 1317076ba34aSJunchao Zhang B = product->B; 1318076ba34aSJunchao Zhang 13190e3ece09SJunchao Zhang // See if numeric has already been done in symbolic (e.g., user calls MatMatMult(A,B,MAT_INITIAL_MATRIX,..,C)). 13200e3ece09SJunchao Zhang // If yes, skip the numeric, but reset the flag so that next time when user calls MatMatMult(E,F,MAT_REUSE_MATRIX,..,C), 13210e3ece09SJunchao Zhang // we still do numeric. 13220e3ece09SJunchao Zhang if (pdata->reusesym) { // numeric reuses results from symbolic 13230e3ece09SJunchao Zhang pdata->reusesym = PETSC_FALSE; 13243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1325076ba34aSJunchao Zhang } 1326076ba34aSJunchao Zhang 1327076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 13280e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AB(product, A, B, pdata->mmAB)); 1329076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 13300e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AtB(product, A, B, pdata->mmAtB)); 13310e3ece09SJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { // BtAB, computed by Z = AB; C= BtZ 13320e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AB(product, A, B, pdata->mmAB)); 13330e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AtB(product, B, pdata->Z, pdata->mmAtB)); 1334076ba34aSJunchao Zhang } 13350e3ece09SJunchao Zhang 13360e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(cmpi->A)); // mark that A, B on device are modified 13370e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(cmpi->B)); 13383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1339076ba34aSJunchao Zhang } 1340076ba34aSJunchao Zhang 134166976f2fSJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_MPIAIJKokkos(Mat C) 1342d71ae5a4SJacob Faibussowitsch { 1343076ba34aSJunchao Zhang Mat A, B; 13440e3ece09SJunchao Zhang Mat_Product *product; 1345076ba34aSJunchao Zhang MatProductType ptype; 13460e3ece09SJunchao Zhang MatProductData_MPIAIJKokkos *pdata; 1347076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 13480e3ece09SJunchao Zhang PetscInt m, n, M, N; 13490e3ece09SJunchao Zhang Mat Cd, Co; 13500e3ece09SJunchao Zhang MPI_Comm comm; 1351076ba34aSJunchao Zhang 1352076ba34aSJunchao Zhang PetscFunctionBegin; 13530e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 1354076ba34aSJunchao Zhang MatCheckProduct(C, 1); 13550e3ece09SJunchao Zhang product = C->product; 13560e3ece09SJunchao Zhang PetscCheck(!product->data, comm, PETSC_ERR_PLIB, "Product data not empty"); 1357076ba34aSJunchao Zhang ptype = product->type; 1358076ba34aSJunchao Zhang A = product->A; 1359076ba34aSJunchao Zhang B = product->B; 1360076ba34aSJunchao Zhang 1361076ba34aSJunchao Zhang switch (ptype) { 13629371c9d4SSatish Balay case MATPRODUCT_AB: 13639371c9d4SSatish Balay m = A->rmap->n; 13649371c9d4SSatish Balay n = B->cmap->n; 13659371c9d4SSatish Balay M = A->rmap->N; 13669371c9d4SSatish Balay N = B->cmap->N; 13679371c9d4SSatish Balay break; 13689371c9d4SSatish Balay case MATPRODUCT_AtB: 13699371c9d4SSatish Balay m = A->cmap->n; 13709371c9d4SSatish Balay n = B->cmap->n; 13719371c9d4SSatish Balay M = A->cmap->N; 13729371c9d4SSatish Balay N = B->cmap->N; 13739371c9d4SSatish Balay break; 13749371c9d4SSatish Balay case MATPRODUCT_PtAP: 13759371c9d4SSatish Balay m = B->cmap->n; 13769371c9d4SSatish Balay n = B->cmap->n; 13779371c9d4SSatish Balay M = B->cmap->N; 13789371c9d4SSatish Balay N = B->cmap->N; 13799371c9d4SSatish Balay break; /* BtAB */ 1380d71ae5a4SJacob Faibussowitsch default: 13810e3ece09SJunchao Zhang SETERRQ(comm, PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 1382076ba34aSJunchao Zhang } 1383076ba34aSJunchao Zhang 13849566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 13859566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 13869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 13879566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 1388076ba34aSJunchao Zhang 13890e3ece09SJunchao Zhang pdata = new MatProductData_MPIAIJKokkos(); 13900e3ece09SJunchao Zhang pdata->reusesym = product->api_user; 1391076ba34aSJunchao Zhang 1392076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 13930e3ece09SJunchao Zhang auto mmAB = new MatMatStruct_AB(); 13940e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AB(product, A, B, mmAB)); 13950e3ece09SJunchao Zhang mm = pdata->mmAB = mmAB; 1396076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 13970e3ece09SJunchao Zhang auto mmAtB = new MatMatStruct_AtB(); 13980e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AtB(product, A, B, mmAtB)); 13990e3ece09SJunchao Zhang mm = pdata->mmAtB = mmAtB; 14000e3ece09SJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { // C = BtAB, computed as Z = AB; C= BtZ 14010e3ece09SJunchao Zhang Mat Zd, Zo, Z; // Zd, Zo are owned by pdata->Z 14020e3ece09SJunchao Zhang 14030e3ece09SJunchao Zhang auto mmAB = new MatMatStruct_AB(); 14040e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AB(product, A, B, mmAB)); // Z stored as mmAB->{Cd, Co} 14050e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mmAB->Cd, &Zd)); 14060e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mmAB->Co, &Zo)); 14070e3ece09SJunchao Zhang pdata->mmAB = mmAB; 14080e3ece09SJunchao Zhang 14090e3ece09SJunchao Zhang m = A->rmap->n; // Z's layout 14100e3ece09SJunchao Zhang n = B->cmap->n; 14110e3ece09SJunchao Zhang M = A->rmap->N; 14120e3ece09SJunchao Zhang N = B->cmap->N; 14130e3ece09SJunchao Zhang PetscCall(MatCreate(comm, &Z)); 14140e3ece09SJunchao Zhang PetscCall(MatSetSizes(Z, m, n, M, N)); 14150e3ece09SJunchao Zhang PetscCall(PetscLayoutSetUp(Z->rmap)); 14160e3ece09SJunchao Zhang PetscCall(PetscLayoutSetUp(Z->cmap)); 14170e3ece09SJunchao Zhang PetscCall(MatSetType(Z, MATMPIAIJKOKKOS)); 14180e3ece09SJunchao Zhang PetscCall(MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Z, Zd, Zo, mmAB->garray)); 14190e3ece09SJunchao Zhang 14200e3ece09SJunchao Zhang auto mmAtB = new MatMatStruct_AtB(); 14210e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AtB(product, B, Z, mmAtB)); // final result C stored as mmAtB->{Cd, Co} 14220e3ece09SJunchao Zhang 14230e3ece09SJunchao Zhang pdata->Z = Z; // give ownership to pdata 14240e3ece09SJunchao Zhang mm = pdata->mmAtB = mmAtB; 1425076ba34aSJunchao Zhang } 14260e3ece09SJunchao Zhang 14270e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mm->Cd, &Cd)); 14280e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mm->Co, &Co)); 14290e3ece09SJunchao Zhang PetscCall(MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(C, Cd, Co, mm->garray)); 14300e3ece09SJunchao Zhang 14310e3ece09SJunchao Zhang C->product->data = pdata; 1432076ba34aSJunchao Zhang C->product->destroy = MatProductDataDestroy_MPIAIJKokkos; 1433076ba34aSJunchao Zhang C->ops->productnumeric = MatProductNumeric_MPIAIJKokkos; 14343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1435076ba34aSJunchao Zhang } 1436076ba34aSJunchao Zhang 1437d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJKokkos(Mat mat) 1438d71ae5a4SJacob Faibussowitsch { 1439076ba34aSJunchao Zhang Mat_Product *product = mat->product; 1440076ba34aSJunchao Zhang PetscBool match = PETSC_FALSE; 1441076ba34aSJunchao Zhang PetscBool usecpu = PETSC_FALSE; 1442076ba34aSJunchao Zhang 1443076ba34aSJunchao Zhang PetscFunctionBegin; 1444076ba34aSJunchao Zhang MatCheckProduct(mat, 1); 144548a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 1446076ba34aSJunchao Zhang if (match) { /* we can always fallback to the CPU if requested */ 1447076ba34aSJunchao Zhang switch (product->type) { 1448076ba34aSJunchao Zhang case MATPRODUCT_AB: 1449076ba34aSJunchao Zhang if (product->api_user) { 1450d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 14519566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 1452d0609cedSBarry Smith PetscOptionsEnd(); 1453076ba34aSJunchao Zhang } else { 1454d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 14559566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 1456d0609cedSBarry Smith PetscOptionsEnd(); 1457076ba34aSJunchao Zhang } 1458076ba34aSJunchao Zhang break; 1459076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1460076ba34aSJunchao Zhang if (product->api_user) { 1461d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 14629566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 1463d0609cedSBarry Smith PetscOptionsEnd(); 1464076ba34aSJunchao Zhang } else { 1465d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 14669566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 1467d0609cedSBarry Smith PetscOptionsEnd(); 1468076ba34aSJunchao Zhang } 1469076ba34aSJunchao Zhang break; 1470076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1471076ba34aSJunchao Zhang if (product->api_user) { 1472d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 14739566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 1474d0609cedSBarry Smith PetscOptionsEnd(); 1475076ba34aSJunchao Zhang } else { 1476d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 14779566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 1478d0609cedSBarry Smith PetscOptionsEnd(); 1479076ba34aSJunchao Zhang } 1480076ba34aSJunchao Zhang break; 1481d71ae5a4SJacob Faibussowitsch default: 1482d71ae5a4SJacob Faibussowitsch break; 1483076ba34aSJunchao Zhang } 1484076ba34aSJunchao Zhang match = (PetscBool)!usecpu; 1485076ba34aSJunchao Zhang } 1486076ba34aSJunchao Zhang if (match) { 1487076ba34aSJunchao Zhang switch (product->type) { 1488076ba34aSJunchao Zhang case MATPRODUCT_AB: 1489076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1490d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 1491d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJKokkos; 1492d71ae5a4SJacob Faibussowitsch break; 1493d71ae5a4SJacob Faibussowitsch default: 1494d71ae5a4SJacob Faibussowitsch break; 1495076ba34aSJunchao Zhang } 1496076ba34aSJunchao Zhang } 1497076ba34aSJunchao Zhang /* fallback to MPIAIJ ops */ 149848a46eb9SPierre Jolivet if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 14993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1500076ba34aSJunchao Zhang } 1501076ba34aSJunchao Zhang 15022c4ab24aSJunchao Zhang // Mirror of MatCOOStruct_MPIAIJ on device 15032c4ab24aSJunchao Zhang struct MatCOOStruct_MPIAIJKokkos { 15042c4ab24aSJunchao Zhang PetscCount n; 15052c4ab24aSJunchao Zhang PetscSF sf; 15062c4ab24aSJunchao Zhang PetscCount Annz, Bnnz; 15072c4ab24aSJunchao Zhang PetscCount Annz2, Bnnz2; 15082c4ab24aSJunchao Zhang PetscCountKokkosView Ajmap1, Aperm1; 15092c4ab24aSJunchao Zhang PetscCountKokkosView Bjmap1, Bperm1; 15102c4ab24aSJunchao Zhang PetscCountKokkosView Aimap2, Ajmap2, Aperm2; 15112c4ab24aSJunchao Zhang PetscCountKokkosView Bimap2, Bjmap2, Bperm2; 15122c4ab24aSJunchao Zhang PetscCountKokkosView Cperm1; 15132c4ab24aSJunchao Zhang MatScalarKokkosView sendbuf, recvbuf; 15142c4ab24aSJunchao Zhang 15152c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJKokkos(const MatCOOStruct_MPIAIJ *coo_h) : 15162c4ab24aSJunchao Zhang n(coo_h->n), 15172c4ab24aSJunchao Zhang sf(coo_h->sf), 15182c4ab24aSJunchao Zhang Annz(coo_h->Annz), 15192c4ab24aSJunchao Zhang Bnnz(coo_h->Bnnz), 15202c4ab24aSJunchao Zhang Annz2(coo_h->Annz2), 15212c4ab24aSJunchao Zhang Bnnz2(coo_h->Bnnz2), 15222c4ab24aSJunchao Zhang Ajmap1(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Ajmap1, coo_h->Annz + 1))), 15232c4ab24aSJunchao Zhang Aperm1(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Aperm1, coo_h->Atot1))), 15242c4ab24aSJunchao Zhang Bjmap1(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Bjmap1, coo_h->Bnnz + 1))), 15252c4ab24aSJunchao Zhang Bperm1(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Bperm1, coo_h->Btot1))), 15262c4ab24aSJunchao Zhang Aimap2(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Aimap2, coo_h->Annz2))), 15272c4ab24aSJunchao Zhang Ajmap2(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Ajmap2, coo_h->Annz2 + 1))), 15282c4ab24aSJunchao Zhang Aperm2(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Aperm2, coo_h->Atot2))), 15292c4ab24aSJunchao Zhang Bimap2(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Bimap2, coo_h->Bnnz2))), 15302c4ab24aSJunchao Zhang Bjmap2(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Bjmap2, coo_h->Bnnz2 + 1))), 15312c4ab24aSJunchao Zhang Bperm2(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Bperm2, coo_h->Btot2))), 15322c4ab24aSJunchao Zhang Cperm1(Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->Cperm1, coo_h->sendlen))), 15336892b982SJunchao Zhang sendbuf(Kokkos::create_mirror_view(Kokkos::WithoutInitializing, DefaultMemorySpace(), MatScalarKokkosViewHost(coo_h->sendbuf, coo_h->sendlen))), 15346892b982SJunchao Zhang recvbuf(Kokkos::create_mirror_view(Kokkos::WithoutInitializing, DefaultMemorySpace(), MatScalarKokkosViewHost(coo_h->recvbuf, coo_h->recvlen))) 15352c4ab24aSJunchao Zhang { 15362c4ab24aSJunchao Zhang PetscCallVoid(PetscObjectReference((PetscObject)sf)); 15372c4ab24aSJunchao Zhang } 15382c4ab24aSJunchao Zhang 15392c4ab24aSJunchao Zhang ~MatCOOStruct_MPIAIJKokkos() { PetscCallVoid(PetscSFDestroy(&sf)); } 15402c4ab24aSJunchao Zhang }; 15412c4ab24aSJunchao Zhang 15422c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJKokkos(void *data) 15432c4ab24aSJunchao Zhang { 15442c4ab24aSJunchao Zhang PetscFunctionBegin; 15452c4ab24aSJunchao Zhang PetscCallCXX(delete static_cast<MatCOOStruct_MPIAIJKokkos *>(data)); 15462c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 15472c4ab24aSJunchao Zhang } 15482c4ab24aSJunchao Zhang 1549d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetPreallocationCOO_MPIAIJKokkos(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 1550d71ae5a4SJacob Faibussowitsch { 15512c4ab24aSJunchao Zhang PetscContainer container_h, container_d; 15522c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo_h; 15532c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJKokkos *coo_d; 155442550becSJunchao Zhang 155542550becSJunchao Zhang PetscFunctionBegin; 155630203840SJunchao Zhang PetscCall(MatSetPreallocationCOO_MPIAIJ(mat, coo_n, coo_i, coo_j)); /* mpiaij->A,B's type is set to seqaijkokkos */ 1557cbc6b225SStefano Zampini mat->preallocated = PETSC_TRUE; 15589566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 15599566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 15609566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat)); 15612c4ab24aSJunchao Zhang 15622c4ab24aSJunchao Zhang // Copy the COO struct to device 15632c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container_h)); 15642c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container_h, (void **)&coo_h)); 15652c4ab24aSJunchao Zhang PetscCallCXX(coo_d = new MatCOOStruct_MPIAIJKokkos(coo_h)); 15662c4ab24aSJunchao Zhang 15672c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 15682c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container_d)); 15692c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container_d, coo_d)); 15702c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container_d, MatCOOStructDestroy_MPIAIJKokkos)); 15712c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Device", (PetscObject)container_d)); 15722c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container_d)); 15733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 157442550becSJunchao Zhang } 157542550becSJunchao Zhang 1576d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJKokkos(Mat mat, const PetscScalar v[], InsertMode imode) 1577d71ae5a4SJacob Faibussowitsch { 1578394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 157942550becSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 158042550becSJunchao Zhang MatScalarKokkosView Aa, Ba; 1581394ed5ebSJunchao Zhang MatScalarKokkosView v1; 158242550becSJunchao Zhang PetscMemType memtype; 15832c4ab24aSJunchao Zhang PetscContainer container; 15842c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJKokkos *coo; 158542550becSJunchao Zhang 158642550becSJunchao Zhang PetscFunctionBegin; 15872c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Device", (PetscObject *)&container)); 15882c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 15892c4ab24aSJunchao Zhang 15902c4ab24aSJunchao Zhang const auto &n = coo->n; 15912c4ab24aSJunchao Zhang const auto &Annz = coo->Annz; 15922c4ab24aSJunchao Zhang const auto &Annz2 = coo->Annz2; 15932c4ab24aSJunchao Zhang const auto &Bnnz = coo->Bnnz; 15942c4ab24aSJunchao Zhang const auto &Bnnz2 = coo->Bnnz2; 15952c4ab24aSJunchao Zhang const auto &vsend = coo->sendbuf; 15962c4ab24aSJunchao Zhang const auto &v2 = coo->recvbuf; 15972c4ab24aSJunchao Zhang const auto &Ajmap1 = coo->Ajmap1; 15982c4ab24aSJunchao Zhang const auto &Ajmap2 = coo->Ajmap2; 15992c4ab24aSJunchao Zhang const auto &Aimap2 = coo->Aimap2; 16002c4ab24aSJunchao Zhang const auto &Bjmap1 = coo->Bjmap1; 16012c4ab24aSJunchao Zhang const auto &Bjmap2 = coo->Bjmap2; 16022c4ab24aSJunchao Zhang const auto &Bimap2 = coo->Bimap2; 16032c4ab24aSJunchao Zhang const auto &Aperm1 = coo->Aperm1; 16042c4ab24aSJunchao Zhang const auto &Aperm2 = coo->Aperm2; 16052c4ab24aSJunchao Zhang const auto &Bperm1 = coo->Bperm1; 16062c4ab24aSJunchao Zhang const auto &Bperm2 = coo->Bperm2; 16072c4ab24aSJunchao Zhang const auto &Cperm1 = coo->Cperm1; 16082c4ab24aSJunchao Zhang 16099566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(v, &memtype)); /* Return PETSC_MEMTYPE_HOST when v is NULL */ 161042550becSJunchao Zhang if (PetscMemTypeHost(memtype)) { /* If user gave v[] in host, we need to copy it to device if any */ 16112c4ab24aSJunchao Zhang v1 = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), MatScalarKokkosViewHost((PetscScalar *)v, n)); 161242550becSJunchao Zhang } else { 16132c4ab24aSJunchao Zhang v1 = MatScalarKokkosView((PetscScalar *)v, n); /* Directly use v[]'s memory */ 161442550becSJunchao Zhang } 161542550becSJunchao Zhang 161642550becSJunchao Zhang if (imode == INSERT_VALUES) { 16179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosViewWrite(A, &Aa)); /* write matrix values */ 16189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosViewWrite(B, &Ba)); 1619394ed5ebSJunchao Zhang } else { 16209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosView(A, &Aa)); /* read & write matrix values */ 16219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosView(B, &Ba)); 162242550becSJunchao Zhang } 162342550becSJunchao Zhang 162408bb9926SJunchao Zhang PetscCall(PetscLogGpuTimeBegin()); 162542550becSJunchao Zhang /* Pack entries to be sent to remote */ 1626d326c3f1SJunchao Zhang Kokkos::parallel_for(Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, vsend.extent(0)), KOKKOS_LAMBDA(const PetscCount i) { vsend(i) = v1(Cperm1(i)); }); 162742550becSJunchao Zhang 162842550becSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 16292c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, vsend.data(), PETSC_MEMTYPE_KOKKOS, v2.data(), MPI_REPLACE)); 1630158ec288SJunchao Zhang /* Add local entries to A and B in one kernel */ 16319371c9d4SSatish Balay Kokkos::parallel_for( 1632d326c3f1SJunchao Zhang Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, Annz + Bnnz), KOKKOS_LAMBDA(PetscCount i) { 1633158ec288SJunchao Zhang PetscScalar sum = 0.0; 1634158ec288SJunchao Zhang if (i < Annz) { 1635158ec288SJunchao Zhang for (PetscCount k = Ajmap1(i); k < Ajmap1(i + 1); k++) sum += v1(Aperm1(k)); 1636ac38520cSJunchao Zhang Aa(i) = (imode == INSERT_VALUES ? 0.0 : Aa(i)) + sum; 1637158ec288SJunchao Zhang } else { 1638158ec288SJunchao Zhang i -= Annz; 1639158ec288SJunchao Zhang for (PetscCount k = Bjmap1(i); k < Bjmap1(i + 1); k++) sum += v1(Bperm1(k)); 1640ac38520cSJunchao Zhang Ba(i) = (imode == INSERT_VALUES ? 0.0 : Ba(i)) + sum; 1641158ec288SJunchao Zhang } 1642158ec288SJunchao Zhang }); 16432c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, vsend.data(), v2.data(), MPI_REPLACE)); 164442550becSJunchao Zhang 1645158ec288SJunchao Zhang /* Add received remote entries to A and B in one kernel */ 16469371c9d4SSatish Balay Kokkos::parallel_for( 1647d326c3f1SJunchao Zhang Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, Annz2 + Bnnz2), KOKKOS_LAMBDA(PetscCount i) { 1648158ec288SJunchao Zhang if (i < Annz2) { 1649158ec288SJunchao Zhang for (PetscCount k = Ajmap2(i); k < Ajmap2(i + 1); k++) Aa(Aimap2(i)) += v2(Aperm2(k)); 1650158ec288SJunchao Zhang } else { 1651158ec288SJunchao Zhang i -= Annz2; 1652158ec288SJunchao Zhang for (PetscCount k = Bjmap2(i); k < Bjmap2(i + 1); k++) Ba(Bimap2(i)) += v2(Bperm2(k)); 1653158ec288SJunchao Zhang } 1654158ec288SJunchao Zhang }); 165508bb9926SJunchao Zhang PetscCall(PetscLogGpuTimeEnd()); 165642550becSJunchao Zhang 1657394ed5ebSJunchao Zhang if (imode == INSERT_VALUES) { 16589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosViewWrite(A, &Aa)); /* Increase A & B's state etc. */ 16599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosViewWrite(B, &Ba)); 1660394ed5ebSJunchao Zhang } else { 16619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosView(A, &Aa)); 16629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosView(B, &Ba)); 1663394ed5ebSJunchao Zhang } 16643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 166542550becSJunchao Zhang } 166642550becSJunchao Zhang 16672c4ab24aSJunchao Zhang static PetscErrorCode MatDestroy_MPIAIJKokkos(Mat A) 1668d71ae5a4SJacob Faibussowitsch { 1669076ba34aSJunchao Zhang PetscFunctionBegin; 16709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatMPIAIJSetPreallocation_C", NULL)); 16719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", NULL)); 16729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetPreallocationCOO_C", NULL)); 16739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetValuesCOO_C", NULL)); 16749566063dSJacob Faibussowitsch PetscCall(MatDestroy_MPIAIJ(A)); 16753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1676076ba34aSJunchao Zhang } 1677076ba34aSJunchao Zhang 1678f4747e26SJunchao Zhang static PetscErrorCode MatShift_MPIAIJKokkos(Mat A, PetscScalar a) 1679f4747e26SJunchao Zhang { 1680f4747e26SJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(A->data); 1681f4747e26SJunchao Zhang PetscBool congruent; 1682f4747e26SJunchao Zhang 1683f4747e26SJunchao Zhang PetscFunctionBegin; 1684f4747e26SJunchao Zhang PetscCall(MatHasCongruentLayouts(A, &congruent)); 1685f4747e26SJunchao Zhang if (congruent) { // square matrix and the diagonals are solely in the diag block 1686f4747e26SJunchao Zhang PetscCall(MatShift(mpiaij->A, a)); 1687f4747e26SJunchao Zhang } else { // too hard, use the general version 1688f4747e26SJunchao Zhang PetscCall(MatShift_Basic(A, a)); 1689f4747e26SJunchao Zhang } 1690f4747e26SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 1691f4747e26SJunchao Zhang } 1692f4747e26SJunchao Zhang 16932c4ab24aSJunchao Zhang static PetscErrorCode MatSetOps_MPIAIJKokkos(Mat B) 16942c4ab24aSJunchao Zhang { 16952c4ab24aSJunchao Zhang PetscFunctionBegin; 16962c4ab24aSJunchao Zhang B->ops->assemblyend = MatAssemblyEnd_MPIAIJKokkos; 16972c4ab24aSJunchao Zhang B->ops->mult = MatMult_MPIAIJKokkos; 16982c4ab24aSJunchao Zhang B->ops->multadd = MatMultAdd_MPIAIJKokkos; 16992c4ab24aSJunchao Zhang B->ops->multtranspose = MatMultTranspose_MPIAIJKokkos; 17002c4ab24aSJunchao Zhang B->ops->productsetfromoptions = MatProductSetFromOptions_MPIAIJKokkos; 17012c4ab24aSJunchao Zhang B->ops->destroy = MatDestroy_MPIAIJKokkos; 1702f4747e26SJunchao Zhang B->ops->shift = MatShift_MPIAIJKokkos; 17032c4ab24aSJunchao Zhang 17042c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJKokkos)); 17052c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJGetLocalMatMerge_C", MatMPIAIJGetLocalMatMerge_MPIAIJKokkos)); 17062c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJKokkos)); 17072c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJKokkos)); 17082c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 17092c4ab24aSJunchao Zhang } 17102c4ab24aSJunchao Zhang 1711d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat A, MatType mtype, MatReuse reuse, Mat *newmat) 1712d71ae5a4SJacob Faibussowitsch { 17138c3ff71bSJunchao Zhang Mat B; 1714076ba34aSJunchao Zhang Mat_MPIAIJ *a; 17158c3ff71bSJunchao Zhang 17168c3ff71bSJunchao Zhang PetscFunctionBegin; 17178c3ff71bSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 17189566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, newmat)); 17198c3ff71bSJunchao Zhang } else if (reuse == MAT_REUSE_MATRIX) { 17209566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *newmat, SAME_NONZERO_PATTERN)); 17218c3ff71bSJunchao Zhang } 17228c3ff71bSJunchao Zhang B = *newmat; 17238c3ff71bSJunchao Zhang 17246f3d89d0SStefano Zampini B->boundtocpu = PETSC_FALSE; 17259566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 17269566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECKOKKOS, &B->defaultvectype)); 17279566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJKOKKOS)); 17288c3ff71bSJunchao Zhang 1729076ba34aSJunchao Zhang a = static_cast<Mat_MPIAIJ *>(A->data); 17309566063dSJacob Faibussowitsch if (a->A) PetscCall(MatSetType(a->A, MATSEQAIJKOKKOS)); 17319566063dSJacob Faibussowitsch if (a->B) PetscCall(MatSetType(a->B, MATSEQAIJKOKKOS)); 17329566063dSJacob Faibussowitsch if (a->lvec) PetscCall(VecSetType(a->lvec, VECSEQKOKKOS)); 17332c4ab24aSJunchao Zhang PetscCall(MatSetOps_MPIAIJKokkos(B)); 17343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17358c3ff71bSJunchao Zhang } 17362c4ab24aSJunchao Zhang 17373f3ba80aSJunchao Zhang /*MC 173811a5261eSBarry Smith MATAIJKOKKOS - "mpiaijkokkos", a matrix type to be used for CSR sparse matrices with Kokkos 17398c3ff71bSJunchao Zhang 174015229ffcSPierre Jolivet A matrix type using Kokkos-Kernels CrsMatrix type for portability across different device types 17413f3ba80aSJunchao Zhang 17422ef1f0ffSBarry Smith Options Database Key: 17432ef1f0ffSBarry Smith . -mat_type aijkokkos - sets the matrix type to `MATAIJKOKKOS` 17443f3ba80aSJunchao Zhang 17453f3ba80aSJunchao Zhang Level: beginner 17463f3ba80aSJunchao Zhang 17471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJKokkos()`, `MATSEQAIJKOKKOS`, `MATSEQAIJ`, `MATMPIAIJ` 17483f3ba80aSJunchao Zhang M*/ 1749d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJKokkos(Mat A) 1750d71ae5a4SJacob Faibussowitsch { 17518c3ff71bSJunchao Zhang PetscFunctionBegin; 17529566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 17539566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIAIJ(A)); 17549566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIAIJ_MPIAIJKokkos(A, MATMPIAIJKOKKOS, MAT_INPLACE_MATRIX, &A)); 17553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17568c3ff71bSJunchao Zhang } 17578c3ff71bSJunchao Zhang 17588c3ff71bSJunchao Zhang /*@C 175911a5261eSBarry Smith MatCreateAIJKokkos - Creates a sparse matrix in `MATAIJKOKOS` (compressed row) format 17608c3ff71bSJunchao Zhang (the default parallel PETSc format). This matrix will ultimately pushed down 176120f4b53cSBarry Smith to Kokkos for calculations. 17628c3ff71bSJunchao Zhang 17638c3ff71bSJunchao Zhang Collective 17648c3ff71bSJunchao Zhang 17658c3ff71bSJunchao Zhang Input Parameters: 176611a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF` 176720f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 176820f4b53cSBarry Smith This value should be the same as the local size used in creating the 176920f4b53cSBarry Smith y vector for the matrix-vector product y = Ax. 177020f4b53cSBarry Smith . n - This value should be the same as the local size used in creating the 177120f4b53cSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 177220f4b53cSBarry Smith calculated if N is given) For square matrices n is almost always `m`. 177320f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 177420f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 177520f4b53cSBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 177620f4b53cSBarry Smith (same value is used for all local rows) 177720f4b53cSBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 177820f4b53cSBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 177920f4b53cSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 178020f4b53cSBarry Smith The size of this array is equal to the number of local rows, i.e `m`. 178120f4b53cSBarry Smith For matrices you plan to factor you must leave room for the diagonal entry and 178220f4b53cSBarry Smith put in the entry even if it is zero. 178320f4b53cSBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 178420f4b53cSBarry Smith submatrix (same value is used for all local rows). 178520f4b53cSBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 178620f4b53cSBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 178720f4b53cSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 178820f4b53cSBarry Smith structure. The size of this array is equal to the number 178920f4b53cSBarry Smith of local rows, i.e `m`. 17908c3ff71bSJunchao Zhang 17918c3ff71bSJunchao Zhang Output Parameter: 17928c3ff71bSJunchao Zhang . A - the matrix 17938c3ff71bSJunchao Zhang 17942ef1f0ffSBarry Smith Level: intermediate 17952ef1f0ffSBarry Smith 17962ef1f0ffSBarry Smith Notes: 179711a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 17988c3ff71bSJunchao Zhang MatXXXXSetPreallocation() paradigm instead of this routine directly. 179911a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 18008c3ff71bSJunchao Zhang 1801667f096bSBarry Smith The AIJ format, also called compressed row storage), is fully compatible with standard Fortran 18028c3ff71bSJunchao Zhang storage. That is, the stored row and column indices can begin at 18032ef1f0ffSBarry Smith either one (as in Fortran) or zero. 18048c3ff71bSJunchao Zhang 18051cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATAIJKOKOS`, `MATSEQAIJKOKOS`, `MATMPIAIJKOKOS`, `MatCreate()`, `MatCreateAIJ()`, `MatSetValues()`, 1806fe59aa6dSJacob Faibussowitsch `MatSeqAIJSetColumnIndices()`, `MatCreateSeqAIJWithArrays()`, `MATMPIAIJKOKKOS`, `MATAIJKOKKOS` 18078c3ff71bSJunchao Zhang @*/ 1808d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJKokkos(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 1809d71ae5a4SJacob Faibussowitsch { 18108c3ff71bSJunchao Zhang PetscMPIInt size; 18118c3ff71bSJunchao Zhang 18128c3ff71bSJunchao Zhang PetscFunctionBegin; 18139566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 18149566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 18159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 18168c3ff71bSJunchao Zhang if (size > 1) { 18179566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJKOKKOS)); 18189566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 18198c3ff71bSJunchao Zhang } else { 18209566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJKOKKOS)); 18219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 18228c3ff71bSJunchao Zhang } 18233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18248c3ff71bSJunchao Zhang } 1825