18c3ff71bSJunchao Zhang #include <petscconf.h> 28c3ff71bSJunchao Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 38c3ff71bSJunchao Zhang 48c3ff71bSJunchao Zhang PetscErrorCode MatAssemblyEnd_MPIAIJKokkos(Mat A,MatAssemblyType mode) 58c3ff71bSJunchao Zhang { 68c3ff71bSJunchao Zhang PetscErrorCode ierr; 78c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)A->data; 88c3ff71bSJunchao Zhang 98c3ff71bSJunchao Zhang PetscFunctionBegin; 108c3ff71bSJunchao Zhang ierr = MatAssemblyEnd_MPIAIJ(A,mode);CHKERRQ(ierr); 118c3ff71bSJunchao Zhang if (!A->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 128c3ff71bSJunchao Zhang ierr = VecSetType(mpiaij->lvec,VECSEQKOKKOS);CHKERRQ(ierr); 138c3ff71bSJunchao Zhang } 148c3ff71bSJunchao Zhang PetscFunctionReturn(0); 158c3ff71bSJunchao Zhang } 168c3ff71bSJunchao Zhang 178c3ff71bSJunchao Zhang PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJKokkos(Mat mat,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 188c3ff71bSJunchao Zhang { 198c3ff71bSJunchao Zhang PetscErrorCode ierr; 208c3ff71bSJunchao Zhang PetscInt i; 218c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 228c3ff71bSJunchao Zhang 238c3ff71bSJunchao Zhang 248c3ff71bSJunchao Zhang PetscFunctionBegin; 258c3ff71bSJunchao Zhang ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 268c3ff71bSJunchao Zhang ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 278c3ff71bSJunchao Zhang if (d_nnz) { 288c3ff71bSJunchao Zhang for (i=0; i<mat->rmap->n; i++) { 298c3ff71bSJunchao Zhang if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %D value %D",i,d_nnz[i]); 308c3ff71bSJunchao Zhang } 318c3ff71bSJunchao Zhang } 328c3ff71bSJunchao Zhang if (o_nnz) { 338c3ff71bSJunchao Zhang for (i=0; i<mat->rmap->n; i++) { 348c3ff71bSJunchao Zhang if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %D value %D",i,o_nnz[i]); 358c3ff71bSJunchao Zhang } 368c3ff71bSJunchao Zhang } 378c3ff71bSJunchao Zhang if (!mat->preallocated) { 388c3ff71bSJunchao Zhang /* Explicitly create 2 MATSEQAIJKOKKOS matrices. */ 398c3ff71bSJunchao Zhang ierr = MatCreate(PETSC_COMM_SELF,&mpiaij->A);CHKERRQ(ierr); 408c3ff71bSJunchao Zhang ierr = MatSetSizes(mpiaij->A,mat->rmap->n,mat->cmap->n,mat->rmap->n,mat->cmap->n);CHKERRQ(ierr); 418c3ff71bSJunchao Zhang ierr = MatSetType(mpiaij->A,MATSEQAIJKOKKOS);CHKERRQ(ierr); 428c3ff71bSJunchao Zhang ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)mpiaij->A);CHKERRQ(ierr); 438c3ff71bSJunchao Zhang ierr = MatCreate(PETSC_COMM_SELF,&mpiaij->B);CHKERRQ(ierr); 448c3ff71bSJunchao Zhang ierr = MatSetSizes(mpiaij->B,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 458c3ff71bSJunchao Zhang ierr = MatSetType(mpiaij->B,MATSEQAIJKOKKOS);CHKERRQ(ierr); 468c3ff71bSJunchao Zhang ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)mpiaij->B);CHKERRQ(ierr); 478c3ff71bSJunchao Zhang } 488c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(mpiaij->A,d_nz,d_nnz);CHKERRQ(ierr); 498c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(mpiaij->B,o_nz,o_nnz);CHKERRQ(ierr); 508c3ff71bSJunchao Zhang 518c3ff71bSJunchao Zhang mat->preallocated = PETSC_TRUE; 528c3ff71bSJunchao Zhang PetscFunctionReturn(0); 538c3ff71bSJunchao Zhang } 548c3ff71bSJunchao Zhang 558c3ff71bSJunchao Zhang PetscErrorCode MatMult_MPIAIJKokkos(Mat mat,Vec xx,Vec yy) 568c3ff71bSJunchao Zhang { 578c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 588c3ff71bSJunchao Zhang PetscErrorCode ierr; 598c3ff71bSJunchao Zhang PetscInt nt; 608c3ff71bSJunchao Zhang 618c3ff71bSJunchao Zhang PetscFunctionBegin; 628c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 638c3ff71bSJunchao Zhang if (nt != mat->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%D) and xx (%D)",mat->cmap->n,nt); 648c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 658c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->mult)(mpiaij->A,xx,yy);CHKERRQ(ierr); 668c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 678c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multadd)(mpiaij->B,mpiaij->lvec,yy,yy);CHKERRQ(ierr); 688c3ff71bSJunchao Zhang PetscFunctionReturn(0); 698c3ff71bSJunchao Zhang } 708c3ff71bSJunchao Zhang 718c3ff71bSJunchao Zhang PetscErrorCode MatMultAdd_MPIAIJKokkos(Mat mat,Vec xx,Vec yy,Vec zz) 728c3ff71bSJunchao Zhang { 738c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 748c3ff71bSJunchao Zhang PetscErrorCode ierr; 758c3ff71bSJunchao Zhang PetscInt nt; 768c3ff71bSJunchao Zhang 778c3ff71bSJunchao Zhang PetscFunctionBegin; 788c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 798c3ff71bSJunchao Zhang if (nt != mat->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%D) and xx (%D)",mat->cmap->n,nt); 808c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 818c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->multadd)(mpiaij->A,xx,yy,zz);CHKERRQ(ierr); 828c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 838c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multadd)(mpiaij->B,mpiaij->lvec,zz,zz);CHKERRQ(ierr); 848c3ff71bSJunchao Zhang PetscFunctionReturn(0); 858c3ff71bSJunchao Zhang } 868c3ff71bSJunchao Zhang 878c3ff71bSJunchao Zhang PetscErrorCode MatMultTranspose_MPIAIJKokkos(Mat mat,Vec xx,Vec yy) 888c3ff71bSJunchao Zhang { 898c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 908c3ff71bSJunchao Zhang PetscErrorCode ierr; 918c3ff71bSJunchao Zhang PetscInt nt; 928c3ff71bSJunchao Zhang 938c3ff71bSJunchao Zhang PetscFunctionBegin; 948c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 958c3ff71bSJunchao Zhang if (nt != mat->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%D) and xx (%D)",mat->rmap->n,nt); 968c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multtranspose)(mpiaij->B,xx,mpiaij->lvec);CHKERRQ(ierr); 978c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->multtranspose)(mpiaij->A,xx,yy);CHKERRQ(ierr); 988c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,mpiaij->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 998c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,mpiaij->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1008c3ff71bSJunchao Zhang PetscFunctionReturn(0); 1018c3ff71bSJunchao Zhang } 1028c3ff71bSJunchao Zhang 1038c3ff71bSJunchao Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat A, MatType mtype, MatReuse reuse, Mat* newmat) 1048c3ff71bSJunchao Zhang { 1058c3ff71bSJunchao Zhang PetscErrorCode ierr; 1068c3ff71bSJunchao Zhang Mat B; 1078c3ff71bSJunchao Zhang 1088c3ff71bSJunchao Zhang PetscFunctionBegin; 1098c3ff71bSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 1108c3ff71bSJunchao Zhang ierr = MatDuplicate(A,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1118c3ff71bSJunchao Zhang } else if (reuse == MAT_REUSE_MATRIX) { 1128c3ff71bSJunchao Zhang ierr = MatCopy(A,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1138c3ff71bSJunchao Zhang } 1148c3ff71bSJunchao Zhang B = *newmat; 1158c3ff71bSJunchao Zhang 1168c3ff71bSJunchao Zhang ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1178c3ff71bSJunchao Zhang ierr = PetscStrallocpy(VECKOKKOS,&B->defaultvectype);CHKERRQ(ierr); 118*3d0639e7SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIAIJKOKKOS);CHKERRQ(ierr); 1198c3ff71bSJunchao Zhang 1208c3ff71bSJunchao Zhang B->ops->assemblyend = MatAssemblyEnd_MPIAIJKokkos; 1218c3ff71bSJunchao Zhang B->ops->mult = MatMult_MPIAIJKokkos; 1228c3ff71bSJunchao Zhang B->ops->multadd = MatMultAdd_MPIAIJKokkos; 1238c3ff71bSJunchao Zhang B->ops->multtranspose = MatMultTranspose_MPIAIJKokkos; 1248c3ff71bSJunchao Zhang 125*3d0639e7SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIAIJSetPreallocation_C",MatMPIAIJSetPreallocation_MPIAIJKokkos);CHKERRQ(ierr); 1268c3ff71bSJunchao Zhang PetscFunctionReturn(0); 1278c3ff71bSJunchao Zhang } 1288c3ff71bSJunchao Zhang 1298c3ff71bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJKokkos(Mat A) 1308c3ff71bSJunchao Zhang { 1318c3ff71bSJunchao Zhang PetscErrorCode ierr; 1328c3ff71bSJunchao Zhang 1338c3ff71bSJunchao Zhang PetscFunctionBegin; 1348c3ff71bSJunchao Zhang ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr); 1358c3ff71bSJunchao Zhang ierr = MatCreate_MPIAIJ(A);CHKERRQ(ierr); 1368c3ff71bSJunchao Zhang ierr = MatConvert_MPIAIJ_MPIAIJKokkos(A,MATMPIAIJKOKKOS,MAT_INPLACE_MATRIX,&A);CHKERRQ(ierr); 1378c3ff71bSJunchao Zhang PetscFunctionReturn(0); 1388c3ff71bSJunchao Zhang } 1398c3ff71bSJunchao Zhang 1408c3ff71bSJunchao Zhang /*@C 1418c3ff71bSJunchao Zhang MatCreateAIJKokkos - Creates a sparse matrix in AIJ (compressed row) format 1428c3ff71bSJunchao Zhang (the default parallel PETSc format). This matrix will ultimately pushed down 1438c3ff71bSJunchao Zhang to Kokkos for calculations. For good matrix 1448c3ff71bSJunchao Zhang assembly performance the user should preallocate the matrix storage by setting 1458c3ff71bSJunchao Zhang the parameter nz (or the array nnz). By setting these parameters accurately, 1468c3ff71bSJunchao Zhang performance during matrix assembly can be increased by more than a factor of 50. 1478c3ff71bSJunchao Zhang 1488c3ff71bSJunchao Zhang Collective 1498c3ff71bSJunchao Zhang 1508c3ff71bSJunchao Zhang Input Parameters: 1518c3ff71bSJunchao Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 1528c3ff71bSJunchao Zhang . m - number of rows 1538c3ff71bSJunchao Zhang . n - number of columns 1548c3ff71bSJunchao Zhang . nz - number of nonzeros per row (same for all rows) 1558c3ff71bSJunchao Zhang - nnz - array containing the number of nonzeros in the various rows 1568c3ff71bSJunchao Zhang (possibly different for each row) or NULL 1578c3ff71bSJunchao Zhang 1588c3ff71bSJunchao Zhang Output Parameter: 1598c3ff71bSJunchao Zhang . A - the matrix 1608c3ff71bSJunchao Zhang 1618c3ff71bSJunchao Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1628c3ff71bSJunchao Zhang MatXXXXSetPreallocation() paradigm instead of this routine directly. 1638c3ff71bSJunchao Zhang [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1648c3ff71bSJunchao Zhang 1658c3ff71bSJunchao Zhang Notes: 1668c3ff71bSJunchao Zhang If nnz is given then nz is ignored 1678c3ff71bSJunchao Zhang 1688c3ff71bSJunchao Zhang The AIJ format (also called the Yale sparse matrix format or 1698c3ff71bSJunchao Zhang compressed row storage), is fully compatible with standard Fortran 77 1708c3ff71bSJunchao Zhang storage. That is, the stored row and column indices can begin at 1718c3ff71bSJunchao Zhang either one (as in Fortran) or zero. See the users' manual for details. 1728c3ff71bSJunchao Zhang 1738c3ff71bSJunchao Zhang Specify the preallocated storage with either nz or nnz (not both). 1748c3ff71bSJunchao Zhang Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 1758c3ff71bSJunchao Zhang allocation. For large problems you MUST preallocate memory or you 1768c3ff71bSJunchao Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 1778c3ff71bSJunchao Zhang 1788c3ff71bSJunchao Zhang By default, this format uses inodes (identical nodes) when possible, to 1798c3ff71bSJunchao Zhang improve numerical efficiency of matrix-vector products and solves. We 1808c3ff71bSJunchao Zhang search for consecutive rows with the same nonzero structure, thereby 1818c3ff71bSJunchao Zhang reusing matrix information to achieve increased efficiency. 1828c3ff71bSJunchao Zhang 1838c3ff71bSJunchao Zhang Level: intermediate 1848c3ff71bSJunchao Zhang 1858c3ff71bSJunchao Zhang .seealso: MatCreate(), MatCreateAIJ(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ(), MATMPIAIJKOKKOS, MATAIJKokkos 1868c3ff71bSJunchao Zhang @*/ 1878c3ff71bSJunchao Zhang PetscErrorCode MatCreateAIJKokkos(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 1888c3ff71bSJunchao Zhang { 1898c3ff71bSJunchao Zhang PetscErrorCode ierr; 1908c3ff71bSJunchao Zhang PetscMPIInt size; 1918c3ff71bSJunchao Zhang 1928c3ff71bSJunchao Zhang PetscFunctionBegin; 1938c3ff71bSJunchao Zhang ierr = MatCreate(comm,A);CHKERRQ(ierr); 1948c3ff71bSJunchao Zhang ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1958c3ff71bSJunchao Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1968c3ff71bSJunchao Zhang if (size > 1) { 1978c3ff71bSJunchao Zhang ierr = MatSetType(*A,MATMPIAIJKOKKOS);CHKERRQ(ierr); 1988c3ff71bSJunchao Zhang ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1998c3ff71bSJunchao Zhang } else { 2008c3ff71bSJunchao Zhang ierr = MatSetType(*A,MATSEQAIJKOKKOS);CHKERRQ(ierr); 2018c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr); 2028c3ff71bSJunchao Zhang } 2038c3ff71bSJunchao Zhang PetscFunctionReturn(0); 2048c3ff71bSJunchao Zhang } 2058c3ff71bSJunchao Zhang 206