111d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 2076ba34aSJunchao Zhang #include <petscsf.h> 3*42550becSJunchao Zhang #include <petsc/private/sfimpl.h> 48c3ff71bSJunchao Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 5*42550becSJunchao Zhang #include <../src/mat/impls/aij/seq/kokkos/aijkok.hpp> 6*42550becSJunchao Zhang #include <../src/mat/impls/aij/mpi/kokkos/mpiaijkok.hpp> 7076ba34aSJunchao Zhang #include <KokkosSparse_spadd.hpp> 811d22bbfSJunchao Zhang 98c3ff71bSJunchao Zhang PetscErrorCode MatAssemblyEnd_MPIAIJKokkos(Mat A,MatAssemblyType mode) 108c3ff71bSJunchao Zhang { 118c3ff71bSJunchao Zhang PetscErrorCode ierr; 128c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)A->data; 13a587d139SMark Mat_SeqAIJKokkos *aijkok = mpiaij->A->spptr ? static_cast<Mat_SeqAIJKokkos*>(mpiaij->A->spptr) : NULL; 148c3ff71bSJunchao Zhang 158c3ff71bSJunchao Zhang PetscFunctionBegin; 168c3ff71bSJunchao Zhang ierr = MatAssemblyEnd_MPIAIJ(A,mode);CHKERRQ(ierr); 17a587d139SMark if (aijkok && aijkok->device_mat_d.data()) { 18a587d139SMark A->offloadmask = PETSC_OFFLOAD_GPU; // in GPU mode, no going back. MatSetValues checks this 19a587d139SMark } 20a587d139SMark 218c3ff71bSJunchao Zhang PetscFunctionReturn(0); 228c3ff71bSJunchao Zhang } 238c3ff71bSJunchao Zhang 248c3ff71bSJunchao Zhang PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJKokkos(Mat mat,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 258c3ff71bSJunchao Zhang { 268c3ff71bSJunchao Zhang PetscErrorCode ierr; 278c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 288c3ff71bSJunchao Zhang 298c3ff71bSJunchao Zhang PetscFunctionBegin; 308c3ff71bSJunchao Zhang ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 318c3ff71bSJunchao Zhang ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 326a29ce69SStefano Zampini #if defined(PETSC_USE_DEBUG) 338c3ff71bSJunchao Zhang if (d_nnz) { 346a29ce69SStefano Zampini PetscInt i; 358c3ff71bSJunchao Zhang for (i=0; i<mat->rmap->n; i++) { 36c0aa6a63SJacob Faibussowitsch if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,d_nnz[i]); 378c3ff71bSJunchao Zhang } 388c3ff71bSJunchao Zhang } 398c3ff71bSJunchao Zhang if (o_nnz) { 406a29ce69SStefano Zampini PetscInt i; 418c3ff71bSJunchao Zhang for (i=0; i<mat->rmap->n; i++) { 42c0aa6a63SJacob Faibussowitsch if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,o_nnz[i]); 438c3ff71bSJunchao Zhang } 448c3ff71bSJunchao Zhang } 456a29ce69SStefano Zampini #endif 466a29ce69SStefano Zampini #if defined(PETSC_USE_CTABLE) 476a29ce69SStefano Zampini ierr = PetscTableDestroy(&mpiaij->colmap);CHKERRQ(ierr); 486a29ce69SStefano Zampini #else 496a29ce69SStefano Zampini ierr = PetscFree(mpiaij->colmap);CHKERRQ(ierr); 506a29ce69SStefano Zampini #endif 516a29ce69SStefano Zampini ierr = PetscFree(mpiaij->garray);CHKERRQ(ierr); 526a29ce69SStefano Zampini ierr = VecDestroy(&mpiaij->lvec);CHKERRQ(ierr); 536a29ce69SStefano Zampini ierr = VecScatterDestroy(&mpiaij->Mvctx);CHKERRQ(ierr); 546a29ce69SStefano Zampini /* Because the B will have been resized we simply destroy it and create a new one each time */ 556a29ce69SStefano Zampini ierr = MatDestroy(&mpiaij->B);CHKERRQ(ierr); 566a29ce69SStefano Zampini 576a29ce69SStefano Zampini if (!mpiaij->A) { 588c3ff71bSJunchao Zhang ierr = MatCreate(PETSC_COMM_SELF,&mpiaij->A);CHKERRQ(ierr); 598c3ff71bSJunchao Zhang ierr = MatSetSizes(mpiaij->A,mat->rmap->n,mat->cmap->n,mat->rmap->n,mat->cmap->n);CHKERRQ(ierr); 608c3ff71bSJunchao Zhang ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)mpiaij->A);CHKERRQ(ierr); 616a29ce69SStefano Zampini } 626a29ce69SStefano Zampini if (!mpiaij->B) { 636a29ce69SStefano Zampini PetscMPIInt size; 6455b25c41SPierre Jolivet ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRMPI(ierr); 658c3ff71bSJunchao Zhang ierr = MatCreate(PETSC_COMM_SELF,&mpiaij->B);CHKERRQ(ierr); 666a29ce69SStefano Zampini ierr = MatSetSizes(mpiaij->B,mat->rmap->n,size > 1 ? mat->cmap->N : 0,mat->rmap->n,size > 1 ? mat->cmap->N : 0);CHKERRQ(ierr); 678c3ff71bSJunchao Zhang ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)mpiaij->B);CHKERRQ(ierr); 688c3ff71bSJunchao Zhang } 696a29ce69SStefano Zampini ierr = MatSetType(mpiaij->A,MATSEQAIJKOKKOS);CHKERRQ(ierr); 706a29ce69SStefano Zampini ierr = MatSetType(mpiaij->B,MATSEQAIJKOKKOS);CHKERRQ(ierr); 718c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(mpiaij->A,d_nz,d_nnz);CHKERRQ(ierr); 728c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(mpiaij->B,o_nz,o_nnz);CHKERRQ(ierr); 738c3ff71bSJunchao Zhang mat->preallocated = PETSC_TRUE; 748c3ff71bSJunchao Zhang PetscFunctionReturn(0); 758c3ff71bSJunchao Zhang } 768c3ff71bSJunchao Zhang 778c3ff71bSJunchao Zhang PetscErrorCode MatMult_MPIAIJKokkos(Mat mat,Vec xx,Vec yy) 788c3ff71bSJunchao Zhang { 798c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 808c3ff71bSJunchao Zhang PetscErrorCode ierr; 818c3ff71bSJunchao Zhang PetscInt nt; 828c3ff71bSJunchao Zhang 838c3ff71bSJunchao Zhang PetscFunctionBegin; 848c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 85c0aa6a63SJacob Faibussowitsch if (nt != mat->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",mat->cmap->n,nt); 868c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 878c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->mult)(mpiaij->A,xx,yy);CHKERRQ(ierr); 888c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 898c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multadd)(mpiaij->B,mpiaij->lvec,yy,yy);CHKERRQ(ierr); 908c3ff71bSJunchao Zhang PetscFunctionReturn(0); 918c3ff71bSJunchao Zhang } 928c3ff71bSJunchao Zhang 938c3ff71bSJunchao Zhang PetscErrorCode MatMultAdd_MPIAIJKokkos(Mat mat,Vec xx,Vec yy,Vec zz) 948c3ff71bSJunchao Zhang { 958c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 968c3ff71bSJunchao Zhang PetscErrorCode ierr; 978c3ff71bSJunchao Zhang PetscInt nt; 988c3ff71bSJunchao Zhang 998c3ff71bSJunchao Zhang PetscFunctionBegin; 1008c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 101c0aa6a63SJacob Faibussowitsch if (nt != mat->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",mat->cmap->n,nt); 1028c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1038c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->multadd)(mpiaij->A,xx,yy,zz);CHKERRQ(ierr); 1048c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1058c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multadd)(mpiaij->B,mpiaij->lvec,zz,zz);CHKERRQ(ierr); 1068c3ff71bSJunchao Zhang PetscFunctionReturn(0); 1078c3ff71bSJunchao Zhang } 1088c3ff71bSJunchao Zhang 1098c3ff71bSJunchao Zhang PetscErrorCode MatMultTranspose_MPIAIJKokkos(Mat mat,Vec xx,Vec yy) 1108c3ff71bSJunchao Zhang { 1118c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 1128c3ff71bSJunchao Zhang PetscErrorCode ierr; 1138c3ff71bSJunchao Zhang PetscInt nt; 1148c3ff71bSJunchao Zhang 1158c3ff71bSJunchao Zhang PetscFunctionBegin; 1168c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 117c0aa6a63SJacob Faibussowitsch if (nt != mat->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",mat->rmap->n,nt); 1188c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multtranspose)(mpiaij->B,xx,mpiaij->lvec);CHKERRQ(ierr); 1198c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->multtranspose)(mpiaij->A,xx,yy);CHKERRQ(ierr); 1208c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,mpiaij->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1218c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,mpiaij->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1228c3ff71bSJunchao Zhang PetscFunctionReturn(0); 1238c3ff71bSJunchao Zhang } 1248c3ff71bSJunchao Zhang 125076ba34aSJunchao Zhang /* Merge the "A, B" matrices of mat into a matrix C. mat's type is MPIAIJKOKKOS. C's type is MATSEQAIJKOKKOS. 126076ba34aSJunchao Zhang A is put before B. C's size would be A->rmap->n by (A->cmap->n + B->cmap->n). 127076ba34aSJunchao Zhang C still uses local column ids. Their corresponding global column ids are returned in glob. 128076ba34aSJunchao Zhang */ 129076ba34aSJunchao Zhang PetscErrorCode MatMPIAIJGetLocalMatMerge_MPIAIJKokkos(Mat mat,MatReuse reuse,IS *glob,Mat *C) 130076ba34aSJunchao Zhang { 131076ba34aSJunchao Zhang Mat Ad,Ao; 132076ba34aSJunchao Zhang const PetscInt *cmap; 133076ba34aSJunchao Zhang PetscErrorCode ierr; 134076ba34aSJunchao Zhang 135076ba34aSJunchao Zhang PetscFunctionBegin; 136076ba34aSJunchao Zhang ierr = MatMPIAIJGetSeqAIJ(mat,&Ad,&Ao,&cmap);CHKERRQ(ierr); 137076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosMergeMats(Ad,Ao,reuse,C);CHKERRQ(ierr); 138076ba34aSJunchao Zhang if (glob) { 139076ba34aSJunchao Zhang PetscInt cst, i, dn, on, *gidx; 140076ba34aSJunchao Zhang ierr = MatGetLocalSize(Ad,NULL,&dn);CHKERRQ(ierr); 141076ba34aSJunchao Zhang ierr = MatGetLocalSize(Ao,NULL,&on);CHKERRQ(ierr); 142076ba34aSJunchao Zhang ierr = MatGetOwnershipRangeColumn(mat,&cst,NULL);CHKERRQ(ierr); 143076ba34aSJunchao Zhang ierr = PetscMalloc1(dn+on,&gidx);CHKERRQ(ierr); 144076ba34aSJunchao Zhang for (i=0; i<dn; i++) gidx[i] = cst + i; 145076ba34aSJunchao Zhang for (i=0; i<on; i++) gidx[i+dn] = cmap[i]; 146076ba34aSJunchao Zhang ierr = ISCreateGeneral(PetscObjectComm((PetscObject)Ad),dn+on,gidx,PETSC_OWN_POINTER,glob);CHKERRQ(ierr); 147076ba34aSJunchao Zhang } 148076ba34aSJunchao Zhang PetscFunctionReturn(0); 149076ba34aSJunchao Zhang } 150076ba34aSJunchao Zhang 151076ba34aSJunchao Zhang /* Structs used in matrix product C=AB, C=A^tB and C=B^tAB */ 152076ba34aSJunchao Zhang struct MatMatStruct { 153076ba34aSJunchao Zhang MatRowMapKokkosView Cdstart; /* Used to split sequential matrix into petsc's A, B format */ 154076ba34aSJunchao Zhang PetscSF sf; /* SF to send/recv matrix entries */ 155076ba34aSJunchao Zhang MatScalarKokkosView abuf; /* buf of mat values in send/recv */ 156076ba34aSJunchao Zhang Mat C1,C2,B_local; 157076ba34aSJunchao Zhang KokkosCsrMatrix C1_global,C2_global,C_global; 158076ba34aSJunchao Zhang KernelHandle kh; 159076ba34aSJunchao Zhang MatMatStruct() { 160076ba34aSJunchao Zhang C1 = C2 = B_local = NULL; 161076ba34aSJunchao Zhang sf = NULL; 162076ba34aSJunchao Zhang } 163076ba34aSJunchao Zhang 164076ba34aSJunchao Zhang ~MatMatStruct() { 165076ba34aSJunchao Zhang MatDestroy(&C1); 166076ba34aSJunchao Zhang MatDestroy(&C2); 167076ba34aSJunchao Zhang MatDestroy(&B_local); 168076ba34aSJunchao Zhang PetscSFDestroy(&sf); 169076ba34aSJunchao Zhang kh.destroy_spadd_handle(); 170076ba34aSJunchao Zhang } 171076ba34aSJunchao Zhang }; 172076ba34aSJunchao Zhang 173076ba34aSJunchao Zhang struct MatMatStruct_AB : public MatMatStruct { 174076ba34aSJunchao Zhang MatColIdxKokkosView rows; 175076ba34aSJunchao Zhang MatRowMapKokkosView rowoffset; 176076ba34aSJunchao Zhang Mat B_other,C_petsc; /* SEQAIJKOKKOS matrices. TODO: have a better var name than C_petsc */ 177076ba34aSJunchao Zhang 178076ba34aSJunchao Zhang MatMatStruct_AB() : B_other(NULL),C_petsc(NULL){} 179076ba34aSJunchao Zhang ~MatMatStruct_AB() { 180076ba34aSJunchao Zhang MatDestroy(&B_other); 181076ba34aSJunchao Zhang MatDestroy(&C_petsc); 182076ba34aSJunchao Zhang } 183076ba34aSJunchao Zhang }; 184076ba34aSJunchao Zhang 185076ba34aSJunchao Zhang struct MatMatStruct_AtB : public MatMatStruct { 186076ba34aSJunchao Zhang MatRowMapKokkosView srcrowoffset,dstrowoffset; 187076ba34aSJunchao Zhang }; 188076ba34aSJunchao Zhang 189076ba34aSJunchao Zhang struct MatProductData_MPIAIJKokkos 190076ba34aSJunchao Zhang { 191076ba34aSJunchao Zhang MatMatStruct_AB *mmAB; 192076ba34aSJunchao Zhang MatMatStruct_AtB *mmAtB; 193076ba34aSJunchao Zhang PetscBool reusesym; 194076ba34aSJunchao Zhang 195076ba34aSJunchao Zhang MatProductData_MPIAIJKokkos(): mmAB(NULL),mmAtB(NULL),reusesym(PETSC_FALSE){} 196076ba34aSJunchao Zhang ~MatProductData_MPIAIJKokkos() { 197076ba34aSJunchao Zhang delete mmAB; 198076ba34aSJunchao Zhang delete mmAtB; 199076ba34aSJunchao Zhang } 200076ba34aSJunchao Zhang }; 201076ba34aSJunchao Zhang 202076ba34aSJunchao Zhang static PetscErrorCode MatProductDataDestroy_MPIAIJKokkos(void *data) 203076ba34aSJunchao Zhang { 204076ba34aSJunchao Zhang PetscFunctionBegin; 205076ba34aSJunchao Zhang CHKERRCXX(delete static_cast<MatProductData_MPIAIJKokkos*>(data)); 206076ba34aSJunchao Zhang PetscFunctionReturn(0); 207076ba34aSJunchao Zhang } 208076ba34aSJunchao Zhang 209076ba34aSJunchao Zhang /* MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds - Get a KokkosCsrMatrix from a MATSEQAIJKOKKOS matrix 210076ba34aSJunchao Zhang 211076ba34aSJunchao Zhang Input Parameters: 212076ba34aSJunchao Zhang + A - the MATSEQAIJKOKKOS matrix 213076ba34aSJunchao Zhang . N - new column size for the returned Kokkos matrix 214076ba34aSJunchao Zhang - l2g - a map that maps old col ids to new col ids 215076ba34aSJunchao Zhang 216076ba34aSJunchao Zhang Output Parameters: 217076ba34aSJunchao Zhang . csrmat - the Kokkos matrix, which has the same row size as A, shares a, i but not j with A. 218076ba34aSJunchao Zhang */ 219076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(Mat A,PetscInt N,const ConstMatColIdxKokkosView& l2g,KokkosCsrMatrix& csrmat) 220076ba34aSJunchao Zhang { 221076ba34aSJunchao Zhang KokkosCsrMatrix& orig = static_cast<Mat_SeqAIJKokkos*>(A->spptr)->csrmat; 222076ba34aSJunchao Zhang MatColIdxKokkosView jg("jg",orig.nnz()); /* New j array for csrmat */ 223076ba34aSJunchao Zhang 224076ba34aSJunchao Zhang PetscFunctionBegin; 225076ba34aSJunchao Zhang CHKERRCXX(Kokkos::parallel_for(orig.nnz(), KOKKOS_LAMBDA(const PetscInt i) {jg(i) = l2g(orig.graph.entries(i));})); 226076ba34aSJunchao Zhang CHKERRCXX(csrmat = KokkosCsrMatrix("csrmat",orig.numRows(),N,orig.nnz(),orig.values,orig.graph.row_map,jg)); 227076ba34aSJunchao Zhang PetscFunctionReturn(0); 228076ba34aSJunchao Zhang } 229076ba34aSJunchao Zhang 230076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices - Set the diag and offdiag matrices of a MATMPIAIJKOKKOS matrix. 231076ba34aSJunchao Zhang It is similar to MatCreateMPIAIJWithSplitArrays. 232076ba34aSJunchao Zhang 233076ba34aSJunchao Zhang Input Parameters: 234076ba34aSJunchao Zhang + mat - the MATMPIAIJKOKKOS matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set 235076ba34aSJunchao Zhang . A - the diag matrix using local col ids 236076ba34aSJunchao Zhang - B - the offdiag matrix using global col ids 237076ba34aSJunchao Zhang 238076ba34aSJunchao Zhang Output Parameters: 239076ba34aSJunchao Zhang . mat - the updated MATMPIAIJKOKKOS matrix 240076ba34aSJunchao Zhang */ 241076ba34aSJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Mat mat,Mat A,Mat B) 242076ba34aSJunchao Zhang { 243076ba34aSJunchao Zhang PetscErrorCode ierr; 244076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ*>(mat->data); 245076ba34aSJunchao Zhang PetscInt m,n,M,N,Am,An,Bm,Bn; 246076ba34aSJunchao Zhang Mat_SeqAIJKokkos *bkok = static_cast<Mat_SeqAIJKokkos*>(B->spptr); 247076ba34aSJunchao Zhang 248076ba34aSJunchao Zhang PetscFunctionBegin; 249076ba34aSJunchao Zhang ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr); 250076ba34aSJunchao Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 251076ba34aSJunchao Zhang ierr = MatGetLocalSize(A,&Am,&An);CHKERRQ(ierr); 252076ba34aSJunchao Zhang ierr = MatGetLocalSize(B,&Bm,&Bn);CHKERRQ(ierr); 253076ba34aSJunchao Zhang 254076ba34aSJunchao Zhang if (m != Am || m != Bm) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"local number of rows do not match"); 255076ba34aSJunchao Zhang if (n != An) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"local number of columns do not match"); 256076ba34aSJunchao Zhang if (N != Bn) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"global number of columns do not match"); 257076ba34aSJunchao Zhang if (mpiaij->A || mpiaij->B) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"A, B of the MPIAIJ matrix are not empty"); 258076ba34aSJunchao Zhang mpiaij->A = A; 259076ba34aSJunchao Zhang mpiaij->B = B; 260076ba34aSJunchao Zhang 261076ba34aSJunchao Zhang mat->preallocated = PETSC_TRUE; 262076ba34aSJunchao Zhang mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 263076ba34aSJunchao Zhang 264076ba34aSJunchao Zhang ierr = MatSetOption(mat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE);CHKERRQ(ierr); 265076ba34aSJunchao Zhang ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 266076ba34aSJunchao Zhang /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 267076ba34aSJunchao Zhang also gets mpiaij->B compacted, with its col ids and size reduced 268076ba34aSJunchao Zhang */ 269076ba34aSJunchao Zhang ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 270076ba34aSJunchao Zhang ierr = MatSetOption(mat,MAT_NO_OFF_PROC_ENTRIES,PETSC_FALSE);CHKERRQ(ierr); 271076ba34aSJunchao Zhang ierr = MatSetOption(mat,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 272076ba34aSJunchao Zhang 273076ba34aSJunchao Zhang /* Update bkok with new local col ids (stored on host) and size */ 274076ba34aSJunchao Zhang bkok->j_dual.modify_host(); 275076ba34aSJunchao Zhang bkok->j_dual.sync_device(); 276076ba34aSJunchao Zhang bkok->SetColSize(mpiaij->B->cmap->n); 277076ba34aSJunchao Zhang PetscFunctionReturn(0); 278076ba34aSJunchao Zhang } 279076ba34aSJunchao Zhang 280076ba34aSJunchao Zhang /* MatSeqAIJKokkosBcast - Bcast rows of a SEQAIJKOKKOS matrice (B) to form a SEQAIJKOKKOS matrix (C). 281076ba34aSJunchao Zhang 282076ba34aSJunchao Zhang It is essentially the MPIAIJKOKKOS counterpart of MatGetBrowsOfAoCols_MPIAIJ, but supports device and uses PetscSF. 283076ba34aSJunchao Zhang In the given ownerSF, leaves correspond to rows in C, and roots correspond to rows in B. Roots may connect to multiple leaves. 284076ba34aSJunchao Zhang Suppose C's j-th row is connected to a root identified by PetscSFNode (k,i), it means we will bcast the i-th row of B on rank k 285076ba34aSJunchao Zhang to j-th row of C. ownerSF's leaves must be contiguous (in other words, as if ilocal=NULL was used to set its graph). 286076ba34aSJunchao Zhang 287076ba34aSJunchao Zhang Collective on comm of ownerSF 288076ba34aSJunchao Zhang 289076ba34aSJunchao Zhang Input Parameters: 290076ba34aSJunchao Zhang + B - the SEQAIJKOKKOS matrix, using local col ids 291076ba34aSJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 292076ba34aSJunchao Zhang . N - global col ids are in range of [0,N). N Must be the same across ranks (nonsignificant in MAT_REUSE_MATRIX) 293076ba34aSJunchao Zhang . l2g - a map mapping B's local col ids to global ones (nonsignificant in MAT_REUSE_MATRIX) 294076ba34aSJunchao Zhang . ownerSF - the ownership SF (nonsignificant in MAT_REUSE_MATRIX) 295076ba34aSJunchao Zhang 296076ba34aSJunchao Zhang Input/Output Parameters (out when resue = MAT_INITIAL_MATRIX, inout when reuse = MAT_REUSE_MATRIX) 297076ba34aSJunchao Zhang + bcastSF - the SF used to bcast rows of B. This plain SF does buffer (abuf) to buffer (Ca) send/recv. In this SF, vertices are nonzeros. 298076ba34aSJunchao Zhang . abuf - buffer for sending matrix values 299076ba34aSJunchao Zhang . rows - array containing indices of (local) rows that this rank needs to bcast to others. Each receiver rank has a chunk in rows[]. 300076ba34aSJunchao Zhang Values in rows[] might have repeats, which simply indicates a row will be bcast'ed to multiple neighbors. 301076ba34aSJunchao Zhang . rowoffset - For each row in rows[], it will be copied to rowoffset[] at abuf[] 302076ba34aSJunchao Zhang - C - the SEQAIJKOKKOS matrix made of the bcast'ed rows, using local col ids. 303076ba34aSJunchao Zhang */ 304076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJKokkosBcast(Mat B,MatReuse reuse,PetscInt N,const ConstMatColIdxKokkosView& l2g,PetscSF ownerSF, 305076ba34aSJunchao Zhang PetscSF& bcastSF,MatScalarKokkosView& abuf,MatColIdxKokkosView& rows, 306076ba34aSJunchao Zhang MatRowMapKokkosView& rowoffset,Mat& C) 307076ba34aSJunchao Zhang { 308076ba34aSJunchao Zhang PetscErrorCode ierr; 309076ba34aSJunchao Zhang Mat_SeqAIJKokkos *bkok,*ckok; 310076ba34aSJunchao Zhang 311076ba34aSJunchao Zhang PetscFunctionBegin; 312076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosSyncDevice(B);CHKERRQ(ierr); /* Make sure B->spptr is accessible */ 313076ba34aSJunchao Zhang bkok = static_cast<Mat_SeqAIJKokkos*>(B->spptr); 314076ba34aSJunchao Zhang 315076ba34aSJunchao Zhang if (reuse == MAT_REUSE_MATRIX) { 316076ba34aSJunchao Zhang ckok = static_cast<Mat_SeqAIJKokkos*>(C->spptr); 317076ba34aSJunchao Zhang 318076ba34aSJunchao Zhang const auto& Ba = bkok->a_dual.view_device(); 319076ba34aSJunchao Zhang const auto& Bi = bkok->i_dual.view_device(); 320076ba34aSJunchao Zhang const auto& Ca = ckok->a_dual.view_device(); 321076ba34aSJunchao Zhang 322076ba34aSJunchao Zhang /* Copy Ba to abuf */ 323076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(rows.extent(0), Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 324076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* rows[i] is r-th row of B */ 325076ba34aSJunchao Zhang PetscInt r = rows(i); 326076ba34aSJunchao Zhang PetscInt base = rowoffset(i); /* Copy r-th row of B to this offset in abuf[] */ 327076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,Bi(r+1)-Bi(r)),[&](PetscInt k) { 328076ba34aSJunchao Zhang abuf(base+k) = Ba(Bi(r)+k); 329076ba34aSJunchao Zhang }); 330076ba34aSJunchao Zhang }); 331076ba34aSJunchao Zhang 332076ba34aSJunchao Zhang /* Send abuf to Ca through bcastSF and then mark C is updated on device */ 333076ba34aSJunchao Zhang ierr = PetscSFBcastBegin(bcastSF,MPIU_SCALAR,abuf.data(),Ca.data(),MPI_REPLACE);CHKERRQ(ierr); /* TODO: get memtype for abuf */ 334076ba34aSJunchao Zhang ierr = PetscSFBcastEnd (bcastSF,MPIU_SCALAR,abuf.data(),Ca.data(),MPI_REPLACE);CHKERRQ(ierr); 335076ba34aSJunchao Zhang ckok->a_dual.modify_device(); 336076ba34aSJunchao Zhang } else if (reuse == MAT_INITIAL_MATRIX) { 337076ba34aSJunchao Zhang MPI_Comm comm; 338076ba34aSJunchao Zhang PetscMPIInt tag; 339076ba34aSJunchao Zhang PetscInt k,Cm,Cn,Cnnz,*Ci_h,nroots,nleaves; 340076ba34aSJunchao Zhang 341076ba34aSJunchao Zhang ierr = PetscObjectGetComm((PetscObject)ownerSF,&comm);CHKERRMPI(ierr); 342076ba34aSJunchao Zhang ierr = PetscSFGetGraph(ownerSF,&nroots,&nleaves,NULL,NULL);CHKERRQ(ierr); 343076ba34aSJunchao Zhang Cm = nleaves; /* row size of C */ 344076ba34aSJunchao Zhang Cn = N; /* col size of C, which initially uses global ids, so we can safely set its col size as N */ 345076ba34aSJunchao Zhang 346076ba34aSJunchao Zhang /* Get row lens (nz) of B's rows for later fast query */ 347076ba34aSJunchao Zhang PetscInt *Browlens; 348076ba34aSJunchao Zhang const PetscInt *tmp = bkok->i_host_data(); 349076ba34aSJunchao Zhang ierr = PetscMalloc1(nroots,&Browlens);CHKERRQ(ierr); 350076ba34aSJunchao Zhang for (k=0; k<nroots; k++) Browlens[k] = tmp[k+1]-tmp[k]; 351076ba34aSJunchao Zhang 352076ba34aSJunchao Zhang /* By ownerSF, each proc gets lens of rows of C */ 353076ba34aSJunchao Zhang MatRowMapKokkosDualView Ci("i",Cm+1); /* C's rowmap */ 354076ba34aSJunchao Zhang Ci_h = Ci.view_host().data(); 355076ba34aSJunchao Zhang Ci_h[0] = 0; 356076ba34aSJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(ownerSF,MPIU_INT,PETSC_MEMTYPE_HOST,Browlens,PETSC_MEMTYPE_HOST,&Ci_h[1],MPI_REPLACE);CHKERRQ(ierr); 357076ba34aSJunchao Zhang ierr = PetscSFBcastEnd(ownerSF,MPIU_INT,Browlens,&Ci_h[1],MPI_REPLACE);CHKERRQ(ierr); 358076ba34aSJunchao Zhang for (k=1; k<Cm+1; k++) Ci_h[k] += Ci_h[k-1]; /* Convert lens to CSR */ 359076ba34aSJunchao Zhang Cnnz = Ci_h[Cm]; 360076ba34aSJunchao Zhang Ci.modify_host(); 361076ba34aSJunchao Zhang Ci.sync_device(); 362076ba34aSJunchao Zhang 363076ba34aSJunchao Zhang /* With the newly known Cnnz, we are able to allocate (j, a) for C on host & device */ 364076ba34aSJunchao Zhang MatColIdxKokkosDualView Cj("j",Cnnz); 365076ba34aSJunchao Zhang MatScalarKokkosDualView Ca("a",Cnnz); 366076ba34aSJunchao Zhang 367076ba34aSJunchao Zhang /* Now build the bcastSF to fill Ca, Cj. This plain SF only does (contiguous) buffer to buffer send/recv */ 368076ba34aSJunchao Zhang const PetscMPIInt *iranks,*ranks; 369076ba34aSJunchao Zhang const PetscInt *ioffset,*irootloc,*roffset; 370076ba34aSJunchao Zhang PetscInt i,j,niranks,nranks,*sdisp,*rdisp,*rowptr; 371076ba34aSJunchao Zhang MPI_Request *reqs; 372076ba34aSJunchao Zhang 373076ba34aSJunchao Zhang ierr = PetscSFGetLeafRanks(ownerSF,&niranks,&iranks,&ioffset,&irootloc);CHKERRQ(ierr); /* irootloc[] contains indices of rows I need to send to each receiver */ 374076ba34aSJunchao Zhang ierr = PetscSFGetRootRanks(ownerSF,&nranks,&ranks,&roffset,NULL/*rmine*/,NULL/*rremote*/);CHKERRQ(ierr); /* recv info */ 375076ba34aSJunchao Zhang 376076ba34aSJunchao Zhang /* figure out offsets at the send buffer, to build the SF 377076ba34aSJunchao Zhang sdisp[] - stores offsets of nonzeros (in abuf or jbuf, see later) I need to send, per receiver. 378076ba34aSJunchao Zhang rowptr[] - stores offsets for data of each row in abuf 379076ba34aSJunchao Zhang 380076ba34aSJunchao Zhang rdisp[] - to receive sdisp[] 381076ba34aSJunchao Zhang */ 382076ba34aSJunchao Zhang ierr = PetscMalloc3(niranks+1,&sdisp,nranks,&rdisp,niranks+nranks,&reqs);CHKERRQ(ierr); 383076ba34aSJunchao Zhang MatRowMapKokkosViewHost rowptr_h("rowptr_h",ioffset[niranks]+1); /* Let Kokkos do the allocation, so that we can do an easy mirror later */ 384076ba34aSJunchao Zhang rowptr = rowptr_h.data(); 385076ba34aSJunchao Zhang 386076ba34aSJunchao Zhang sdisp[0] = 0; 387076ba34aSJunchao Zhang rowptr[0] = 0; 388076ba34aSJunchao Zhang for (i=0; i<niranks; i++) { /* for each receiver */ 389076ba34aSJunchao Zhang PetscInt len, nz = 0; 390076ba34aSJunchao Zhang for (j=ioffset[i]; j<ioffset[i+1]; j++) { /* for each row to this receiver */ 391076ba34aSJunchao Zhang len = Browlens[irootloc[j]]; 392076ba34aSJunchao Zhang rowptr[j+1] = rowptr[j] + len; 393076ba34aSJunchao Zhang nz += len; 394076ba34aSJunchao Zhang } 395076ba34aSJunchao Zhang sdisp[i+1] = sdisp[i] + nz; 396076ba34aSJunchao Zhang } 397076ba34aSJunchao Zhang ierr = PetscCommGetNewTag(comm,&tag);CHKERRMPI(ierr); 398076ba34aSJunchao Zhang for (i=0; i<nranks; i++) {ierr = MPI_Irecv(&rdisp[i],1,MPIU_INT,ranks[i],tag,comm,&reqs[i]);CHKERRMPI(ierr);} 399076ba34aSJunchao Zhang for (i=0; i<niranks; i++) {ierr = MPI_Isend(&sdisp[i],1,MPIU_INT,iranks[i],tag,comm,&reqs[nranks+i]);CHKERRMPI(ierr);} 400076ba34aSJunchao Zhang ierr = MPI_Waitall(niranks+nranks,reqs,MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 401076ba34aSJunchao Zhang 402076ba34aSJunchao Zhang PetscInt nleaves2 = Cnnz; /* leaves are the nonzeros I will receive */ 403076ba34aSJunchao Zhang PetscInt nroots2 = sdisp[niranks]; /* roots are the nonzeros (in abuf) I will send */ 404076ba34aSJunchao Zhang PetscSFNode *iremote; 405076ba34aSJunchao Zhang ierr = PetscMalloc1(nleaves2,&iremote);CHKERRQ(ierr); 406076ba34aSJunchao Zhang for (i=0; i<nranks; i++) { /* for each sender */ 407076ba34aSJunchao Zhang k = 0; 408076ba34aSJunchao Zhang for (j=Ci_h[roffset[i]]; j<Ci_h[roffset[i+1]]; j++) { 409076ba34aSJunchao Zhang iremote[j].rank = ranks[i]; 410076ba34aSJunchao Zhang iremote[j].index = rdisp[i] + k; 411076ba34aSJunchao Zhang k++; 412076ba34aSJunchao Zhang } 413076ba34aSJunchao Zhang } 414076ba34aSJunchao Zhang /* TODO: we should extend PetscSF APIs for this buffer-to-buffer send/recv */ 415076ba34aSJunchao Zhang ierr = PetscSFCreate(comm,&bcastSF);CHKERRQ(ierr); 416076ba34aSJunchao Zhang ierr = PetscSFSetGraph(bcastSF,nroots2,nleaves2,NULL/*ilocal*/,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 417076ba34aSJunchao Zhang 418076ba34aSJunchao Zhang /* Extract selected rows of B, and copy their (a, j) into abuf[] and jbuf[], with j converted 419076ba34aSJunchao Zhang from local to global. Then use bcastSF to fill Ca, Cj. 420076ba34aSJunchao Zhang */ 421076ba34aSJunchao Zhang ConstMatColIdxKokkosViewHost rows_h(irootloc,ioffset[niranks]); /* irootloc[] stores indices of rows I need to send */ 422076ba34aSJunchao Zhang MatColIdxKokkosView rows("rows",ioffset[niranks]); 423076ba34aSJunchao Zhang Kokkos::deep_copy(rows,rows_h); /* Use deep copy since irootoc is managed by PetscSF and we want 'rows' to be standalone */ 424076ba34aSJunchao Zhang 425076ba34aSJunchao Zhang rowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),rowptr_h); /* If no device, rowoffset will be an alias to rowptr_h */ 426076ba34aSJunchao Zhang 427076ba34aSJunchao Zhang MatColIdxKokkosView jbuf("jbuf",sdisp[niranks]); /* send buf for (global) col ids */ 428076ba34aSJunchao Zhang abuf = MatScalarKokkosView("abuf",sdisp[niranks]); /* send buf for mat values */ 429076ba34aSJunchao Zhang 430076ba34aSJunchao Zhang const auto& Ba = bkok->a_dual.view_device(); 431076ba34aSJunchao Zhang const auto& Bi = bkok->i_dual.view_device(); 432076ba34aSJunchao Zhang const auto& Bj = bkok->j_dual.view_device(); 433076ba34aSJunchao Zhang 434076ba34aSJunchao Zhang /* Copy Ba, Bj to abuf, jbuf with change col ids from local to global */ 435076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(rows.extent(0), Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 436076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* rows[i] is r-th row of B */ 437076ba34aSJunchao Zhang PetscInt r = rows(i); 438076ba34aSJunchao Zhang PetscInt base = rowoffset(i); /* Copy r-th row of B to this offset in abuf[] */ 439076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,Bi(r+1)-Bi(r)),[&](PetscInt k) { 440076ba34aSJunchao Zhang abuf(base+k) = Ba(Bi(r)+k); 441076ba34aSJunchao Zhang jbuf(base+k) = l2g(Bj(Bi(r)+k)); 442076ba34aSJunchao Zhang }); 443076ba34aSJunchao Zhang }); 444076ba34aSJunchao Zhang 445076ba34aSJunchao Zhang /* Send abuf & jbuf to fill Ca, Cj */ 446076ba34aSJunchao Zhang ierr = PetscSFBcastBegin(bcastSF,MPIU_INT, jbuf.data(),Cj.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 447076ba34aSJunchao Zhang ierr = PetscSFBcastBegin(bcastSF,MPIU_SCALAR,abuf.data(),Ca.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 448076ba34aSJunchao Zhang ierr = PetscSFBcastEnd (bcastSF,MPIU_INT, jbuf.data(),Cj.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 449076ba34aSJunchao Zhang ierr = PetscSFBcastEnd (bcastSF,MPIU_SCALAR,abuf.data(),Ca.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 450076ba34aSJunchao Zhang Cj.modify_device(); /* Mark Cj, Ca modified on device, but only sync Cj since we might not need Ca on host at all */ 451076ba34aSJunchao Zhang Cj.sync_host(); 452076ba34aSJunchao Zhang Ca.modify_device(); 453076ba34aSJunchao Zhang 454076ba34aSJunchao Zhang /* Construct C with Ca, Ci, Cj */ 455076ba34aSJunchao Zhang auto ckok = new Mat_SeqAIJKokkos(Cm,Cn,Cnnz,Ci,Cj,Ca); 456076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,ckok,&C);CHKERRQ(ierr); 457076ba34aSJunchao Zhang ierr = PetscFree3(sdisp,rdisp,reqs);CHKERRQ(ierr); 458076ba34aSJunchao Zhang ierr = PetscFree(Browlens);CHKERRQ(ierr); 459546078acSJacob Faibussowitsch } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unsupported MatReuse enum %d",reuse); 460076ba34aSJunchao Zhang PetscFunctionReturn(0); 461076ba34aSJunchao Zhang } 462076ba34aSJunchao Zhang 463076ba34aSJunchao Zhang /* MatSeqAIJKokkosReduce - Reduce rows of a SEQAIJKOKKOS matrix (A) to form a Kokkos Csr matrix (C) 464076ba34aSJunchao Zhang 465076ba34aSJunchao Zhang It is the reverse of MatSeqAIJKokkosBcast in some sense. 466076ba34aSJunchao Zhang 467076ba34aSJunchao Zhang Think each row of A as a leaf, then the given ownerSF specifies roots of the leaves. Roots may connect to multiple leaves. 468076ba34aSJunchao Zhang In this routine, we reduce (i.e., concatenate) leaves (rows) at their roots to form potentially longer rows in C. Such rows might 469076ba34aSJunchao Zhang contain repeats, which does not matter since they will be summed up by other routines. C's row size will be nroots of ownerSF. 470076ba34aSJunchao Zhang 471076ba34aSJunchao Zhang Input Parameters: 472076ba34aSJunchao Zhang + A - the SEQAIJKOKKOS matrix to be reduced 473076ba34aSJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 474076ba34aSJunchao Zhang . local - true if A uses local col ids; false if A is already in global col ids. 475076ba34aSJunchao Zhang . N - if local, N is A's global col size 476076ba34aSJunchao Zhang . l2g - if local, a map mapping A's local col ids to global ones, which are in range of [0,N). 477076ba34aSJunchao Zhang - ownerSF - the SF specifies ownership (root) of rows in A 478076ba34aSJunchao Zhang 479076ba34aSJunchao Zhang Output Parameters: 480076ba34aSJunchao Zhang + reduceSF - the SF to reduce A's rows to contiguous buffers at the receiver side 481076ba34aSJunchao Zhang . abuf - a contiguous buffer to receive A's rows sent to this proc. Suppose there are 'nrows' such rows. 482076ba34aSJunchao Zhang . srcrowoffset - offset array of size nrows+1. Each entry is the corresponding row's offset in abuf[]. srcrowoffset[i+1]-srcrowoffset[i] is row i's len. 483076ba34aSJunchao Zhang . dstrowoffset - offset array of size nrows. Each entry is the corresponding row's offset in Ca[], i.e., C's 'a' array. Row i, i+1 in abuf[] may go to 484076ba34aSJunchao Zhang unrelated places in Ca, so dstrowoffset is not in CSR-like format as srcrowoffset. 485076ba34aSJunchao Zhang - C - the matrix made up by rows sent to me from other ranks, using global col ids 486076ba34aSJunchao Zhang 487076ba34aSJunchao Zhang TODO: we can even have MatSeqAIJKokkosReduceBegin/End to provide oppertunity for callers to overlap comp./comm. when reuse = MAT_REUSE_MATRIX. 488076ba34aSJunchao Zhang */ 489076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJKokkosReduce(Mat A,MatReuse reuse,PetscBool local,PetscInt N,const ConstMatColIdxKokkosView& l2g,PetscSF ownerSF, 490076ba34aSJunchao Zhang PetscSF& reduceSF,MatScalarKokkosView& abuf, 491076ba34aSJunchao Zhang MatRowMapKokkosView& srcrowoffset,MatRowMapKokkosView& dstrowoffset, 492076ba34aSJunchao Zhang KokkosCsrMatrix& C) 493076ba34aSJunchao Zhang { 494076ba34aSJunchao Zhang PetscErrorCode ierr; 495076ba34aSJunchao Zhang PetscInt i,r,Am,An,Annz,Cnnz,nrows; 496076ba34aSJunchao Zhang const PetscInt *Ai; 497076ba34aSJunchao Zhang Mat_SeqAIJKokkos *akok; 498076ba34aSJunchao Zhang 499076ba34aSJunchao Zhang PetscFunctionBegin; 500076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosSyncDevice(A);CHKERRQ(ierr); /* So that A's latest data is on device */ 501076ba34aSJunchao Zhang ierr = MatGetSize(A,&Am,&An); 502076ba34aSJunchao Zhang Ai = static_cast<Mat_SeqAIJ*>(A->data)->i; 503076ba34aSJunchao Zhang akok = static_cast<Mat_SeqAIJKokkos*>(A->spptr); 504076ba34aSJunchao Zhang Annz = Ai[Am]; 505076ba34aSJunchao Zhang 506076ba34aSJunchao Zhang if (reuse == MAT_REUSE_MATRIX) { 507076ba34aSJunchao Zhang /* Send Aa to abuf */ 508076ba34aSJunchao Zhang ierr = PetscSFReduceBegin(reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 509076ba34aSJunchao Zhang ierr = PetscSFReduceEnd (reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 510076ba34aSJunchao Zhang 511076ba34aSJunchao Zhang /* Copy abuf to Ca */ 512076ba34aSJunchao Zhang const MatScalarKokkosView& Ca = C.values; 513076ba34aSJunchao Zhang nrows = dstrowoffset.extent(0); /* Not srcrowoffset[] since it has an extra entry for CSR */ 514076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(nrows, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 515076ba34aSJunchao Zhang PetscInt i = t.league_rank(); 516076ba34aSJunchao Zhang PetscInt src = srcrowoffset(i), dst = dstrowoffset(i); 517076ba34aSJunchao Zhang PetscInt len = srcrowoffset(i+1) - srcrowoffset(i); 518076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,len), [&](PetscInt k) {Ca(dst+k) = abuf(src+k);}); 519076ba34aSJunchao Zhang }); 520076ba34aSJunchao Zhang } else if (reuse == MAT_INITIAL_MATRIX) { 521076ba34aSJunchao Zhang MPI_Comm comm; 522076ba34aSJunchao Zhang MPI_Request *reqs; 523076ba34aSJunchao Zhang PetscMPIInt tag; 524076ba34aSJunchao Zhang PetscInt Cm; 525076ba34aSJunchao Zhang 526076ba34aSJunchao Zhang ierr = PetscObjectGetComm((PetscObject)ownerSF,&comm);CHKERRQ(ierr); 527076ba34aSJunchao Zhang ierr = PetscCommGetNewTag(comm,&tag);CHKERRQ(ierr); 528076ba34aSJunchao Zhang 529076ba34aSJunchao Zhang PetscInt niranks,nranks,nroots,nleaves; 530076ba34aSJunchao Zhang const PetscMPIInt *iranks,*ranks; 531076ba34aSJunchao Zhang const PetscInt *ioffset,*rows,*roffset; /* rows[] contains local indices of rows scattered to me from others. ioffset[] is a CSR on rows[] */ 532076ba34aSJunchao Zhang ierr = PetscSFSetUp(ownerSF);CHKERRQ(ierr); 533076ba34aSJunchao Zhang ierr = PetscSFGetLeafRanks(ownerSF,&niranks,&iranks,&ioffset,&rows);CHKERRQ(ierr); /* recv info: iranks[] will send rows to me */ 534076ba34aSJunchao Zhang ierr = PetscSFGetRootRanks(ownerSF,&nranks,&ranks,&roffset,NULL/*rmine*/,NULL/*rremote*/);CHKERRQ(ierr); /* send info */ 535076ba34aSJunchao Zhang ierr = PetscSFGetGraph(ownerSF,&nroots,&nleaves,NULL,NULL);CHKERRQ(ierr); 536546078acSJacob Faibussowitsch if (nleaves != Am) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"ownerSF's nleaves(%" PetscInt_FMT ") != row size of A(%" PetscInt_FMT ")",nleaves,Am); 537076ba34aSJunchao Zhang Cm = nroots; 538076ba34aSJunchao Zhang nrows = ioffset[niranks]; /* # of rows to be received. Might receive same row (each is partial) from different senders */ 539076ba34aSJunchao Zhang 540076ba34aSJunchao Zhang /* Tell owners how long each row I will send */ 541076ba34aSJunchao Zhang PetscInt *srowlens; /* send buf of row lens */ 542076ba34aSJunchao Zhang MatRowMapKokkosViewHost rrowlens_h("rrowoffset_h",nrows+1); /* recv buf of row lens. +1 to make CSR later. Memory might be passed to other views */ 543076ba34aSJunchao Zhang PetscInt *rrowlens = rrowlens_h.data(); 544076ba34aSJunchao Zhang 545076ba34aSJunchao Zhang ierr = PetscMalloc2(Am,&srowlens,niranks+nranks,&reqs);CHKERRQ(ierr); 546076ba34aSJunchao Zhang for (i=0; i<Am; i++) srowlens[i] = Ai[i+1] - Ai[i]; 547076ba34aSJunchao Zhang rrowlens[0] = 0; 548076ba34aSJunchao Zhang rrowlens++; /* shift the pointer to make the following expression more readable */ 549076ba34aSJunchao Zhang for (i=0; i<niranks; i++){ierr = MPI_Irecv(&rrowlens[ioffset[i]],ioffset[i+1]-ioffset[i],MPIU_INT,iranks[i],tag,comm,&reqs[i]);CHKERRMPI(ierr);} 550076ba34aSJunchao Zhang for (i=0; i<nranks; i++) {ierr = MPI_Isend(&srowlens[roffset[i]],roffset[i+1]-roffset[i],MPIU_INT,ranks[i],tag,comm,&reqs[niranks+i]);CHKERRMPI(ierr);} 551076ba34aSJunchao Zhang ierr = MPI_Waitall(niranks+nranks,reqs,MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 552076ba34aSJunchao Zhang 553076ba34aSJunchao Zhang /* Owner builds Ci on host by histogramming rrowlens[] */ 554076ba34aSJunchao Zhang MatRowMapKokkosViewHost Ci_h("i",Cm+1); 555076ba34aSJunchao Zhang Kokkos::deep_copy(Ci_h,0); /* Zero Ci */ 556076ba34aSJunchao Zhang MatRowMapType *Ci_ptr = Ci_h.data(); 557076ba34aSJunchao Zhang 558076ba34aSJunchao Zhang for (i=0; i<nrows; i++) { 559076ba34aSJunchao Zhang r = rows[i]; /* local row id of i-th received row */ 560076ba34aSJunchao Zhang #if defined(PETSC_USE_DEBUG) 561546078acSJacob Faibussowitsch if (r<0 || r>=Cm) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"local row id (%" PetscInt_FMT ") is out of range [0,%" PetscInt_FMT ")",r,Cm); 562076ba34aSJunchao Zhang #endif 563076ba34aSJunchao Zhang Ci_ptr[r+1] += rrowlens[i]; /* add to length of row r in C */ 564076ba34aSJunchao Zhang } 565076ba34aSJunchao Zhang for (i=0; i<Cm; i++) Ci_ptr[i+1] += Ci_ptr[i]; /* to CSR format */ 566076ba34aSJunchao Zhang Cnnz = Ci_ptr[Cm]; 567076ba34aSJunchao Zhang 568076ba34aSJunchao Zhang /* For each received row, compute src & dst offsets in memory copying (from recv bufs abuf, jbuf to Ca, Cj) */ 569076ba34aSJunchao Zhang MatRowMapKokkosViewHost dstrowoffset_h("dstrowoffset_h",nrows); 570076ba34aSJunchao Zhang PetscInt *dstrowoffset_hptr = dstrowoffset_h.data(); 571076ba34aSJunchao Zhang PetscInt *currowlens; /* Current row lens. They are temp accumulators for row lens in C, to help build dstrowoffset */ 572076ba34aSJunchao Zhang 573076ba34aSJunchao Zhang ierr = PetscCalloc1(Cm,&currowlens);CHKERRQ(ierr); /* Init with zero, to be added to */ 574076ba34aSJunchao Zhang for (i=0; i<nrows; i++) { /* for each row I receive */ 575076ba34aSJunchao Zhang r = rows[i]; /* row id in C */ 576076ba34aSJunchao Zhang dstrowoffset_hptr[i] = Ci_ptr[r] + currowlens[r]; /* dst offset of the new place for each recv'ed row in Ca/Cj */ 577076ba34aSJunchao Zhang currowlens[r] += rrowlens[i]; /* accumulate to length of row r in C */ 578076ba34aSJunchao Zhang } 579076ba34aSJunchao Zhang ierr = PetscFree(currowlens);CHKERRQ(ierr); 580076ba34aSJunchao Zhang 581076ba34aSJunchao Zhang rrowlens--; 582076ba34aSJunchao Zhang for (i=0; i<nrows; i++) rrowlens[i+1] += rrowlens[i]; /* Change rrowlens[] to CSR format */ 583076ba34aSJunchao Zhang dstrowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),dstrowoffset_h); 584076ba34aSJunchao Zhang srcrowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),rrowlens_h); /* src offset of each recv'ed row in abuf/jbuf */ 585076ba34aSJunchao Zhang 586076ba34aSJunchao Zhang /* Build the reduceSF, which performs buffer to buffer send/recv */ 587076ba34aSJunchao Zhang PetscInt *sdisp,*rdisp; /* buffer to send offsets of roots, and buffer to recv them */ 588076ba34aSJunchao Zhang ierr = PetscMalloc2(niranks,&sdisp,nranks,&rdisp);CHKERRQ(ierr); 589076ba34aSJunchao Zhang for (i=0; i<niranks; i++) sdisp[i] = rrowlens[ioffset[i]]; 590076ba34aSJunchao Zhang for (i=0; i<nranks; i++) {ierr = MPI_Irecv(&rdisp[i],1,MPIU_INT,ranks[i],tag,comm,&reqs[i]);CHKERRMPI(ierr);} 591076ba34aSJunchao Zhang for (i=0; i<niranks; i++) {ierr = MPI_Isend(&sdisp[i],1,MPIU_INT,iranks[i],tag,comm,&reqs[nranks+i]);CHKERRMPI(ierr);} 592076ba34aSJunchao Zhang ierr = MPI_Waitall(niranks+nranks,reqs,MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 593076ba34aSJunchao Zhang 594076ba34aSJunchao Zhang /* Nonzeros in abuf/jbuf are roots and those in A are leaves */ 595076ba34aSJunchao Zhang PetscInt nroots2 = Cnnz,nleaves2 = Annz; 596076ba34aSJunchao Zhang PetscSFNode *iremote; 597076ba34aSJunchao Zhang ierr = PetscMalloc1(nleaves2,&iremote);CHKERRQ(ierr); /* no free, since memory will be given to reduceSF */ 598076ba34aSJunchao Zhang for (i=0; i<nranks; i++) { 599076ba34aSJunchao Zhang PetscInt rootbase = rdisp[i]; /* root offset at this root rank */ 600076ba34aSJunchao Zhang PetscInt leafbase = Ai[roffset[i]]; /* leaf base */ 601076ba34aSJunchao Zhang PetscInt nz = Ai[roffset[i+1]] - leafbase; /* I will send nz nonzeros to this root rank */ 602076ba34aSJunchao Zhang for (PetscInt k=0; k<nz; k++) { 603076ba34aSJunchao Zhang iremote[leafbase+k].rank = ranks[i]; 604076ba34aSJunchao Zhang iremote[leafbase+k].index = rootbase + k; 605076ba34aSJunchao Zhang } 606076ba34aSJunchao Zhang } 607076ba34aSJunchao Zhang ierr = PetscSFCreate(comm,&reduceSF);CHKERRQ(ierr); 608076ba34aSJunchao Zhang ierr = PetscSFSetGraph(reduceSF,nroots2,nleaves2,NULL,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 609076ba34aSJunchao Zhang ierr = PetscFree2(sdisp,rdisp);CHKERRQ(ierr); 610076ba34aSJunchao Zhang 611076ba34aSJunchao Zhang /* Reduce Aa, Ajg to abuf and jbuf */ 612076ba34aSJunchao Zhang 613076ba34aSJunchao Zhang /* If A uses local col ids, convert them to global ones before sending */ 614076ba34aSJunchao Zhang MatColIdxKokkosView Ajg; 615076ba34aSJunchao Zhang if (local) { 616076ba34aSJunchao Zhang Ajg = MatColIdxKokkosView("j",Annz); 617076ba34aSJunchao Zhang const MatColIdxKokkosView& Aj = akok->j_dual.view_device(); 618076ba34aSJunchao Zhang Kokkos::parallel_for(Annz,KOKKOS_LAMBDA(const PetscInt i) {Ajg(i) = l2g(Aj(i));}); 619076ba34aSJunchao Zhang } else { 620076ba34aSJunchao Zhang Ajg = akok->j_dual.view_device(); /* no data copy, just take a reference */ 621076ba34aSJunchao Zhang } 622076ba34aSJunchao Zhang 623076ba34aSJunchao Zhang MatColIdxKokkosView jbuf("jbuf",Cnnz); 624076ba34aSJunchao Zhang abuf = MatScalarKokkosView("abuf",Cnnz); 625076ba34aSJunchao Zhang ierr = PetscSFReduceBegin(reduceSF,MPIU_INT, Ajg.data(), jbuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 626076ba34aSJunchao Zhang ierr = PetscSFReduceEnd (reduceSF,MPIU_INT, Ajg.data(), jbuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 627076ba34aSJunchao Zhang ierr = PetscSFReduceBegin(reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 628076ba34aSJunchao Zhang ierr = PetscSFReduceEnd (reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 629076ba34aSJunchao Zhang 630076ba34aSJunchao Zhang /* Copy data from abuf, jbuf to Ca, Cj */ 631076ba34aSJunchao Zhang MatRowMapKokkosView Ci = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),Ci_h); /* Ci is an alias of Ci_h if no device */ 632076ba34aSJunchao Zhang MatColIdxKokkosView Cj("j",Cnnz); 633076ba34aSJunchao Zhang MatScalarKokkosView Ca("a",Cnnz); 634076ba34aSJunchao Zhang 635076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(nrows, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 636076ba34aSJunchao Zhang PetscInt i = t.league_rank(); 637076ba34aSJunchao Zhang PetscInt src = srcrowoffset(i), dst = dstrowoffset(i); 638076ba34aSJunchao Zhang PetscInt len = srcrowoffset(i+1) - srcrowoffset(i); 639076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,len), [&](PetscInt k) { 640076ba34aSJunchao Zhang Ca(dst+k) = abuf(src+k); 641076ba34aSJunchao Zhang Cj(dst+k) = jbuf(src+k); 642076ba34aSJunchao Zhang }); 643076ba34aSJunchao Zhang }); 644076ba34aSJunchao Zhang 645076ba34aSJunchao Zhang /* Build C with Ca, Ci, Cj */ 646076ba34aSJunchao Zhang C = KokkosCsrMatrix("csrmat",Cm,N,Cnnz,Ca,Ci,Cj); 647076ba34aSJunchao Zhang ierr = PetscFree2(srowlens,reqs);CHKERRQ(ierr); 648546078acSJacob Faibussowitsch } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unsupported MatReuse enum %d",reuse); 649076ba34aSJunchao Zhang PetscFunctionReturn(0); 650076ba34aSJunchao Zhang } 651076ba34aSJunchao Zhang 652076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithGlobalCSRMatrix - Set the diag and offdiag parts of a MATMPIAIJKOKKOS matrix by splitting a KokkosCsrMatrix 653076ba34aSJunchao Zhang 654076ba34aSJunchao Zhang Input Parameters: 655076ba34aSJunchao Zhang + C - the MATMPIAIJKOKKOS matrix, of size m,n,M,N 656076ba34aSJunchao Zhang . reuse - indicate whether the matrix has called this function before 657076ba34aSJunchao Zhang . csrmat - the KokkosCsrMatrix, of size m,N 658076ba34aSJunchao Zhang - Cdstart - when reuse == MAT_REUSE_MATRIX, it is an input parameter. For each row in csrmat, it stores the start of the first 659076ba34aSJunchao Zhang entry of the diag block of C in csrmat's j array. E.g, if row i has col ids = {0, 3, 4, 5, 7, 9} and the first diag 660076ba34aSJunchao Zhang entry is 5, then Cdstart[i] = 3. 661076ba34aSJunchao Zhang 662076ba34aSJunchao Zhang Output Parameters: 663076ba34aSJunchao Zhang + C - the updated MATMPIAIJKOKKOS matrix 664076ba34aSJunchao Zhang - Cdstart - when reuse == MAT_INITIAL_MATRIX, it is an output parameter 665076ba34aSJunchao Zhang 666076ba34aSJunchao Zhang Notes: 667076ba34aSJunchao Zhang Between calls with MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX, csrmat must have the same nonzero pattern 668076ba34aSJunchao Zhang */ 669076ba34aSJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithGlobalCSRMatrix(Mat C,MatReuse reuse,const KokkosCsrMatrix& csrmat,MatRowMapKokkosView& Cdstart) 670076ba34aSJunchao Zhang { 671076ba34aSJunchao Zhang PetscErrorCode ierr; 672076ba34aSJunchao Zhang const MatScalarKokkosView& Ca = csrmat.values; 673076ba34aSJunchao Zhang const ConstMatRowMapKokkosView& Ci = csrmat.graph.row_map; 674076ba34aSJunchao Zhang PetscInt m,n,N; 675076ba34aSJunchao Zhang 676076ba34aSJunchao Zhang PetscFunctionBegin; 677076ba34aSJunchao Zhang ierr = MatGetLocalSize(C,&m,&n);CHKERRQ(ierr); 678076ba34aSJunchao Zhang ierr = MatGetSize(C,NULL,&N);CHKERRQ(ierr); 679076ba34aSJunchao Zhang 680076ba34aSJunchao Zhang if (reuse == MAT_REUSE_MATRIX) { 681076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ*>(C->data); 682076ba34aSJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos*>(mpiaij->A->spptr); 683076ba34aSJunchao Zhang Mat_SeqAIJKokkos *bkok = static_cast<Mat_SeqAIJKokkos*>(mpiaij->B->spptr); 684076ba34aSJunchao Zhang const MatScalarKokkosView& Cda = akok->a_dual.view_device(),Coa = bkok->a_dual.view_device(); 685076ba34aSJunchao Zhang const MatRowMapKokkosView& Cdi = akok->i_dual.view_device(),Coi = bkok->i_dual.view_device(); 686076ba34aSJunchao Zhang 687076ba34aSJunchao Zhang /* Fill 'a' of Cd and Co on device */ 688076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(m, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 689076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 690076ba34aSJunchao Zhang PetscInt clen = Ci(i+1) - Ci(i); /* len of row i of C */ 691076ba34aSJunchao Zhang PetscInt cdlen = Cdi(i+1) - Cdi(i); /* len of row i of Cd */ 692076ba34aSJunchao Zhang PetscInt cdstart = Cdstart(i); /* [start, end) of row i of Cd in C */ 693076ba34aSJunchao Zhang PetscInt cdend = cdstart + cdlen; 694076ba34aSJunchao Zhang /* [0, clen) is cut into three blocks: [0, cdstart), [cdstart, cdend), [cdend, clen) */ 695076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, clen), [&](PetscInt k) { 696076ba34aSJunchao Zhang if (k < cdstart) { /* k in [0, cdstart) */ 697076ba34aSJunchao Zhang Coa(Coi(i)+k) = Ca(Ci(i)+k); 698076ba34aSJunchao Zhang } else if (k < cdend) { /* k in [cdstart, cdend) */ 699076ba34aSJunchao Zhang Cda(Cdi(i)+(k-cdstart)) = Ca(Ci(i)+k); 700076ba34aSJunchao Zhang } else { /* k in [cdend, clen) */ 701076ba34aSJunchao Zhang Coa(Coi(i)+k-cdlen) = Ca(Ci(i)+k); 702076ba34aSJunchao Zhang } 703076ba34aSJunchao Zhang }); 704076ba34aSJunchao Zhang }); 705076ba34aSJunchao Zhang 706076ba34aSJunchao Zhang akok->a_dual.modify_device(); 707076ba34aSJunchao Zhang bkok->a_dual.modify_device(); 708076ba34aSJunchao Zhang } else if (reuse == MAT_INITIAL_MATRIX) { 709076ba34aSJunchao Zhang Mat Cd,Co; 710076ba34aSJunchao Zhang const MatColIdxKokkosView& Cj = csrmat.graph.entries; 711076ba34aSJunchao Zhang MatRowMapKokkosDualView Cdi_dual("i",m+1),Coi_dual("i",m+1); 712076ba34aSJunchao Zhang MatRowMapKokkosView Cdi = Cdi_dual.view_device(),Coi = Coi_dual.view_device(); 713076ba34aSJunchao Zhang PetscInt cstart,cend; 714076ba34aSJunchao Zhang 715076ba34aSJunchao Zhang /* Note that each row of C is sorted by col ids. We want to find out how to cut each row into three blocks: 716076ba34aSJunchao Zhang left to the diag block, diag block, right to the diag block. The diag block have col ids in [cstart,cend). 717076ba34aSJunchao Zhang Suppose a row of C has len nonzeros, indexed by [0, len). We want to know two indices: cdstart and cdend, 718076ba34aSJunchao Zhang such that the three blocks are [0,cdstart), [cdstart,cdend), [cdend,len). The following code equivalentaly 719076ba34aSJunchao Zhang stores values of cdstart and cdend-cstart (aka Cdi[]) instead. 720076ba34aSJunchao Zhang */ 721076ba34aSJunchao Zhang Cdstart = MatRowMapKokkosView("Cdstart",m); 722076ba34aSJunchao Zhang ierr = PetscLayoutGetRange(C->cmap,&cstart,&cend);CHKERRQ(ierr); /* Not MatGetOwnershipRangeColumn() since C has not been preallocated yet */ 723076ba34aSJunchao Zhang 724076ba34aSJunchao Zhang /* I could use RangePolicy and one thread per row. But since each thread essentially does binary search, threads in a 725076ba34aSJunchao Zhang CUDA warp would completely diverge. So I use TeamPolicy with a team size 1. 726076ba34aSJunchao Zhang */ 727076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(m, 1),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 728076ba34aSJunchao Zhang Kokkos::single(Kokkos::PerTeam(t), [=] () { /* Only one thread works in a team */ 729076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 730076ba34aSJunchao Zhang PetscInt j,first,count,step; 731076ba34aSJunchao Zhang 732076ba34aSJunchao Zhang if (i == 0) { /* Set the first entry of the i arrays to zero on device, to be used in CSR */ 733076ba34aSJunchao Zhang Cdi(0) = 0; 734076ba34aSJunchao Zhang Coi(0) = 0; 735076ba34aSJunchao Zhang } 736076ba34aSJunchao Zhang 737076ba34aSJunchao Zhang /* Do std::lower_bound(Ci(i),Ci(i+1),cstart) on Cj[]. We use j as the iterator. lower_bound() returns 738076ba34aSJunchao Zhang in 'first' the first iterator with a value >= cstart, or last iterator if no such element is found. 739076ba34aSJunchao Zhang */ 740076ba34aSJunchao Zhang count = Ci(i+1)-Ci(i); 741076ba34aSJunchao Zhang first = Ci(i); 742076ba34aSJunchao Zhang while (count > 0) { 743076ba34aSJunchao Zhang j = first; 744076ba34aSJunchao Zhang step = count / 2; 745076ba34aSJunchao Zhang j += step; 746076ba34aSJunchao Zhang if (Cj(j) < cstart) { 747076ba34aSJunchao Zhang first = ++j; 748076ba34aSJunchao Zhang count -= step + 1; 749076ba34aSJunchao Zhang } else count = step; 750076ba34aSJunchao Zhang } 751076ba34aSJunchao Zhang Cdstart(i) = first - Ci(i); /* 'first' is the while-loop's output */ 752076ba34aSJunchao Zhang 753076ba34aSJunchao Zhang /* Do std::lower_bound(first,Ci(i+1),cend) on Cj[] */ 754076ba34aSJunchao Zhang count = Ci(i+1) - first; 755076ba34aSJunchao Zhang while (count > 0) { 756076ba34aSJunchao Zhang j = first; 757076ba34aSJunchao Zhang step = count / 2; 758076ba34aSJunchao Zhang j += step; 759076ba34aSJunchao Zhang if (Cj(j) < cend) { 760076ba34aSJunchao Zhang first = ++j; 761076ba34aSJunchao Zhang count -= step + 1; 762076ba34aSJunchao Zhang } else count = step; 763076ba34aSJunchao Zhang } 764076ba34aSJunchao Zhang Cdi(i+1) = first - (Ci(i)+Cdstart(i)); /* 'first' is the while-loop's output */ 765076ba34aSJunchao Zhang Coi(i+1) = (Ci(i+1)-Ci(i)) - Cdi(i+1); /* Co's row len = C's row len - Cd's row len */ 766076ba34aSJunchao Zhang }); 767076ba34aSJunchao Zhang }); 768076ba34aSJunchao Zhang 769076ba34aSJunchao Zhang /* Convert row lens in Cdi[], Coi[] to CSR format using inclusive scan, e.g., changing [0,1,2,3] into [0,1,3,6] */ 770076ba34aSJunchao Zhang Kokkos::parallel_scan(m+1,KOKKOS_LAMBDA(const PetscInt i,PetscInt& update,const bool final) { 771076ba34aSJunchao Zhang update += Cdi(i); 772076ba34aSJunchao Zhang if (final) Cdi(i) = update; 773076ba34aSJunchao Zhang }); 774076ba34aSJunchao Zhang Kokkos::parallel_scan(m+1,KOKKOS_LAMBDA(const PetscInt i,PetscInt& update,const bool final) { 775076ba34aSJunchao Zhang update += Coi(i); 776076ba34aSJunchao Zhang if (final) Coi(i) = update; 777076ba34aSJunchao Zhang }); 778076ba34aSJunchao Zhang 779076ba34aSJunchao Zhang /* Get Cdi, Coi on host (it is not a waste, since we do need them on host in 780076ba34aSJunchao Zhang MatCreateSeqAIJKokkosWithCSRMatrix() below), then get nnz of Cd and Co. 781076ba34aSJunchao Zhang */ 782076ba34aSJunchao Zhang Cdi_dual.modify_device(); 783076ba34aSJunchao Zhang Coi_dual.modify_device(); 784076ba34aSJunchao Zhang Cdi_dual.sync_host(); 785076ba34aSJunchao Zhang Coi_dual.sync_host(); 786076ba34aSJunchao Zhang PetscInt Cd_nnz = Cdi_dual.view_host().data()[m]; 787076ba34aSJunchao Zhang PetscInt Co_nnz = Coi_dual.view_host().data()[m]; 788076ba34aSJunchao Zhang 789076ba34aSJunchao Zhang /* With nnz, allocate a, j for Cd and Co */ 790076ba34aSJunchao Zhang MatColIdxKokkosDualView Cdj_dual("j",Cd_nnz),Coj_dual("j",Co_nnz); 791076ba34aSJunchao Zhang MatScalarKokkosDualView Cda_dual("a",Cd_nnz),Coa_dual("a",Co_nnz); 792076ba34aSJunchao Zhang 793076ba34aSJunchao Zhang /* Fill a, j of Cd and Co on device */ 794076ba34aSJunchao Zhang MatColIdxKokkosView Cdj = Cdj_dual.view_device(),Coj = Coj_dual.view_device(); 795076ba34aSJunchao Zhang MatScalarKokkosView Cda = Cda_dual.view_device(),Coa = Coa_dual.view_device(); 796076ba34aSJunchao Zhang 797076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(m, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 798076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 799076ba34aSJunchao Zhang PetscInt clen = Ci(i+1) - Ci(i); /* len of row i of C */ 800076ba34aSJunchao Zhang PetscInt cdlen = Cdi(i+1) - Cdi(i); /* len of row i of Cd */ 801076ba34aSJunchao Zhang PetscInt cdstart = Cdstart(i); /* [start, end) of row i of Cd in C */ 802076ba34aSJunchao Zhang PetscInt cdend = cdstart + cdlen; 803076ba34aSJunchao Zhang /* [0, clen) is cut into three blocks: [0, cdstart), [cdstart, cdend), [cdend, clen) */ 804076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, clen), [&](PetscInt k) { 805076ba34aSJunchao Zhang if (k < cdstart) { /* k in [0, cdstart) */ 806076ba34aSJunchao Zhang Coa(Coi(i)+k) = Ca(Ci(i)+k); 807076ba34aSJunchao Zhang Coj(Coi(i)+k) = Cj(Ci(i)+k); 808076ba34aSJunchao Zhang } else if (k < cdend) { /* k in [cdstart, cdend) */ 809076ba34aSJunchao Zhang Cda(Cdi(i)+(k-cdstart)) = Ca(Ci(i)+k); 810076ba34aSJunchao Zhang Cdj(Cdi(i)+(k-cdstart)) = Cj(Ci(i)+k) - cstart; /* Use local col ids in Cdj */ 811076ba34aSJunchao Zhang } else { /* k in [cdend, clen) */ 812076ba34aSJunchao Zhang Coa(Coi(i)+k-cdlen) = Ca(Ci(i)+k); 813076ba34aSJunchao Zhang Coj(Coi(i)+k-cdlen) = Cj(Ci(i)+k); 814076ba34aSJunchao Zhang } 815076ba34aSJunchao Zhang }); 816076ba34aSJunchao Zhang }); 817076ba34aSJunchao Zhang 818076ba34aSJunchao Zhang Cdj_dual.modify_device(); 819076ba34aSJunchao Zhang Cda_dual.modify_device(); 820076ba34aSJunchao Zhang Coj_dual.modify_device(); 821076ba34aSJunchao Zhang Coa_dual.modify_device(); 822076ba34aSJunchao Zhang /* With a, i, j for Cd and Co, finally build Cd, Co and then C. Their offloadmask will be set in each's MatAssemblyEnd */ 823076ba34aSJunchao Zhang auto cdkok = new Mat_SeqAIJKokkos(m,n,Cd_nnz,Cdi_dual,Cdj_dual,Cda_dual); 824076ba34aSJunchao Zhang auto cokok = new Mat_SeqAIJKokkos(m,N,Co_nnz,Coi_dual,Coj_dual,Coa_dual); 825076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,cdkok,&Cd);CHKERRQ(ierr); 826076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,cokok,&Co);CHKERRQ(ierr); 827076ba34aSJunchao Zhang ierr = MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(C,Cd,Co);CHKERRQ(ierr); /* Coj will be converted to local ids within */ 828076ba34aSJunchao Zhang } 829076ba34aSJunchao Zhang PetscFunctionReturn(0); 830076ba34aSJunchao Zhang } 831076ba34aSJunchao Zhang 832076ba34aSJunchao Zhang /* MatSeqAIJCompactOutExtraColumns_SeqAIJKokkos - Compact a SEQAIJKOKKS matrix's global col ids. 833076ba34aSJunchao Zhang 834076ba34aSJunchao Zhang It is similar to MatSeqAIJCompactOutExtraColumns_SeqAIJ, but it applies to SEQAIJKOKKOS and returns the l2g map in Kokkos view. 835076ba34aSJunchao Zhang 836076ba34aSJunchao Zhang Input Parameters: 837076ba34aSJunchao Zhang + C - the MATMPIAIJKOKKOS matrix, of size m,n,M,N 838076ba34aSJunchao Zhang . reuse - indicate whether the matrix has called this function before 839076ba34aSJunchao Zhang . csrmat - the KokkosCsrMatrix, of size m,N 840076ba34aSJunchao Zhang - Cdoffset - when reuse == MAT_REUSE_MATRIX, it is an input parameter. For each row in csrmat, it stores the offset of the first 841076ba34aSJunchao Zhang entry of the diag block of C in csrmat's j array. 842076ba34aSJunchao Zhang 843076ba34aSJunchao Zhang Output Parameters: 844076ba34aSJunchao Zhang + C - the updated MATMPIAIJKOKKOS matrix 845076ba34aSJunchao Zhang - Cdoffset - when reuse == MAT_INITIAL_MATRIX, it is an output parameter 846076ba34aSJunchao Zhang 847076ba34aSJunchao Zhang Notes: the input matrix's col ids and col size will be changed. 848076ba34aSJunchao Zhang */ 849076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJCompactOutExtraColumns_SeqAIJKokkos(Mat C,MatColIdxKokkosView& l2g) 850076ba34aSJunchao Zhang { 851076ba34aSJunchao Zhang PetscErrorCode ierr; 852076ba34aSJunchao Zhang Mat_SeqAIJKokkos *ckok; 853076ba34aSJunchao Zhang ISLocalToGlobalMapping l2gmap; 854076ba34aSJunchao Zhang const PetscInt *garray; 855076ba34aSJunchao Zhang PetscInt sz; 856076ba34aSJunchao Zhang 857076ba34aSJunchao Zhang PetscFunctionBegin; 858076ba34aSJunchao Zhang /* Compact P_other's global col ids and col size. We do it since we guess with local ids KK might be more memory scalable */ 859076ba34aSJunchao Zhang ierr = MatSeqAIJCompactOutExtraColumns_SeqAIJ(C,&l2gmap);CHKERRQ(ierr); 860076ba34aSJunchao Zhang ckok = static_cast<Mat_SeqAIJKokkos*>(C->spptr); 861076ba34aSJunchao Zhang ckok->j_dual.modify_host(); /* P_other's j is modified on host; we need to sync it on device */ 862076ba34aSJunchao Zhang ckok->j_dual.sync_device(); 863076ba34aSJunchao Zhang ckok->SetColSize(C->cmap->n); /* Update col size of the csrmat in spptr */ 864076ba34aSJunchao Zhang 865076ba34aSJunchao Zhang /* Build l2g -- the local to global mapping of C's cols */ 866076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingGetIndices(l2gmap,&garray);CHKERRQ(ierr); 867076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingGetSize(l2gmap,&sz);CHKERRQ(ierr); 868546078acSJacob Faibussowitsch if (C->cmap->n != sz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"matrix column size(%" PetscInt_FMT ") != l2g mapping size(%" PetscInt_FMT ")", C->cmap->n,sz); 869076ba34aSJunchao Zhang 870076ba34aSJunchao Zhang ConstMatColIdxKokkosViewHost tmp(garray,sz); 871076ba34aSJunchao Zhang l2g = MatColIdxKokkosView("l2g",sz); 872076ba34aSJunchao Zhang Kokkos::deep_copy(l2g,tmp); 873076ba34aSJunchao Zhang 874076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingRestoreIndices(l2gmap,&garray);CHKERRQ(ierr); 875076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingDestroy(&l2gmap);CHKERRQ(ierr); 876076ba34aSJunchao Zhang PetscFunctionReturn(0); 877076ba34aSJunchao Zhang } 878076ba34aSJunchao Zhang 879076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AB - AB flavor of MatProductSymbolic_MPIAIJKokkos 880076ba34aSJunchao Zhang 881076ba34aSJunchao Zhang Input Parameters: 882076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 883076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 884076ba34aSJunchao Zhang . B - an MPIAIJKOKKOS matrix 885076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data when computing AB. Persist from symbolic to numeric operations. 886076ba34aSJunchao Zhang 887076ba34aSJunchao Zhang Notes: The local part of the result C is stored as mm->C_global, which is of type KokkosCsrMatrix and uses global col ids. 888076ba34aSJunchao Zhang */ 889076ba34aSJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AB(Mat_Product *product,Mat A,Mat B,MatMatStruct_AB *mm) 890076ba34aSJunchao Zhang { 891076ba34aSJunchao Zhang PetscErrorCode ierr; 892076ba34aSJunchao Zhang Mat_MPIAIJ *a = static_cast<Mat_MPIAIJ*>(A->data); 893076ba34aSJunchao Zhang Mat Ad = a->A,Ao = a->B; /* diag and offdiag of A */ 894076ba34aSJunchao Zhang IS glob = NULL; 895076ba34aSJunchao Zhang const PetscInt *garray; 896076ba34aSJunchao Zhang PetscInt N = B->cmap->N,sz; 897076ba34aSJunchao Zhang ConstMatColIdxKokkosView l2g1; /* two temp maps mapping local col ids to global ones */ 898076ba34aSJunchao Zhang MatColIdxKokkosView l2g2; 899076ba34aSJunchao Zhang Mat C1,C2; /* intermediate matrices */ 900076ba34aSJunchao Zhang 901076ba34aSJunchao Zhang PetscFunctionBegin; 902076ba34aSJunchao Zhang /* C1 = Ad * B_local. B_local is a matrix got by merging Bd and Bo, and uses local col ids */ 903076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_INITIAL_MATRIX,&glob,&mm->B_local);CHKERRQ(ierr); 904076ba34aSJunchao Zhang ierr = MatProductCreate(Ad,mm->B_local,NULL,&C1);CHKERRQ(ierr); 905076ba34aSJunchao Zhang ierr = MatProductSetType(C1,MATPRODUCT_AB);CHKERRQ(ierr); 906076ba34aSJunchao Zhang ierr = MatProductSetFill(C1,product->fill);CHKERRQ(ierr); 907076ba34aSJunchao Zhang C1->product->api_user = product->api_user; 908076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C1);CHKERRQ(ierr); 909076ba34aSJunchao Zhang if (!C1->ops->productsymbolic) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C1->product->type]); 910076ba34aSJunchao Zhang ierr = (*C1->ops->productsymbolic)(C1);CHKERRQ(ierr); 911076ba34aSJunchao Zhang 912076ba34aSJunchao Zhang ierr = ISGetIndices(glob,&garray);CHKERRQ(ierr); 913076ba34aSJunchao Zhang ierr = ISGetSize(glob,&sz);CHKERRQ(ierr); 914076ba34aSJunchao Zhang const auto& tmp = ConstMatColIdxKokkosViewHost(garray,sz); /* wrap garray as a view */ 915076ba34aSJunchao Zhang l2g1 = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),tmp); /* maybe just an alias to tmp, so we restore garray at the very end */ 916076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(C1,N,l2g1,mm->C1_global); 917076ba34aSJunchao Zhang 918076ba34aSJunchao Zhang /* C2 = Ao * B_other. B_other is a matrix consisting of needed rows of B gathered from other procs */ 919076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosBcast(mm->B_local,MAT_INITIAL_MATRIX,N,l2g1,a->Mvctx,mm->sf, 920076ba34aSJunchao Zhang mm->abuf,mm->rows,mm->rowoffset,mm->B_other);CHKERRQ(ierr); 921076ba34aSJunchao Zhang 922076ba34aSJunchao Zhang /* Compact B_other to use local ids as we guess KK spgemm is more memroy scalable with that; We could skip the compaction to simplify code */ 923076ba34aSJunchao Zhang ierr = MatSeqAIJCompactOutExtraColumns_SeqAIJKokkos(mm->B_other,l2g2);CHKERRQ(ierr); 924076ba34aSJunchao Zhang ierr = MatProductCreate(Ao,mm->B_other,NULL,&C2);CHKERRQ(ierr); 925076ba34aSJunchao Zhang ierr = MatProductSetType(C2,MATPRODUCT_AB);CHKERRQ(ierr); 926076ba34aSJunchao Zhang ierr = MatProductSetFill(C2,product->fill);CHKERRQ(ierr); 927076ba34aSJunchao Zhang C2->product->api_user = product->api_user; 928076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C2);CHKERRQ(ierr); 929076ba34aSJunchao Zhang if (!C2->ops->productsymbolic) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C2->product->type]); 930076ba34aSJunchao Zhang ierr = (*C2->ops->productsymbolic)(C2);CHKERRQ(ierr); 931076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(C2,N,l2g2,mm->C2_global); 932076ba34aSJunchao Zhang 933076ba34aSJunchao Zhang /* C = C1 + C2. We actually use their global col ids versions in adding */ 934076ba34aSJunchao Zhang mm->kh.create_spadd_handle(false); /* Input C1, C2 are NOT sorted, since B_local, B_other are not */ 935076ba34aSJunchao Zhang KokkosSparse::spadd_symbolic(&mm->kh,mm->C1_global,mm->C2_global,mm->C_global); 936076ba34aSJunchao Zhang /* Have to do numeric since spadd_symbolic does not really populate column indices of the result matrix */ 937076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&mm->kh,(MatScalarType)1.0,mm->C1_global,(MatScalarType)1.0,mm->C2_global,mm->C_global); 938076ba34aSJunchao Zhang 939076ba34aSJunchao Zhang mm->C1 = C1; 940076ba34aSJunchao Zhang mm->C2 = C2; 941076ba34aSJunchao Zhang ierr = ISRestoreIndices(glob,&garray);CHKERRQ(ierr); 942076ba34aSJunchao Zhang ierr = ISDestroy(&glob);CHKERRQ(ierr); 943076ba34aSJunchao Zhang PetscFunctionReturn(0); 944076ba34aSJunchao Zhang } 945076ba34aSJunchao Zhang 946076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AtB - A^tB flavor of MatProductSymbolic_MPIAIJKokkos 947076ba34aSJunchao Zhang 948076ba34aSJunchao Zhang Input Parameters: 949076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 950076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 951076ba34aSJunchao Zhang . B - a SEQAIJKOKKOS matrix. It works as if A^t is multiplied by a parallel matrix made up of Bs on each rank. 952076ba34aSJunchao Zhang . localB - Does B use local col ids? If false, then B is already in global col ids. 953076ba34aSJunchao Zhang . N - col size of the "parallel B matrix". It implies B's global col ids are in range of [0,N) and N is the same across the communicator. 954076ba34aSJunchao Zhang . l2g - If localB, then l2g maps B's local col ids to global ones. 955076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data in AtB 956076ba34aSJunchao Zhang 957076ba34aSJunchao Zhang Notes: The local part of the result C is stored as mm->C_global, which is of type KokkosCsrMatrix and uses global col ids. 958076ba34aSJunchao Zhang */ 959076ba34aSJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AtB(Mat_Product *product,Mat A,Mat B,PetscBool localB,PetscInt N,const ConstMatColIdxKokkosView& l2g,MatMatStruct_AtB *mm) 960076ba34aSJunchao Zhang { 961076ba34aSJunchao Zhang PetscErrorCode ierr; 962076ba34aSJunchao Zhang Mat_MPIAIJ *a = static_cast<Mat_MPIAIJ*>(A->data); 963076ba34aSJunchao Zhang Mat Ad = a->A,Ao = a->B; /* diag and offdiag of A */ 964076ba34aSJunchao Zhang Mat C1,C2; /* intermediate matrices */ 965076ba34aSJunchao Zhang 966076ba34aSJunchao Zhang PetscFunctionBegin; 967076ba34aSJunchao Zhang /* C1 = Ad^t * B */ 968076ba34aSJunchao Zhang ierr = MatProductCreate(Ad,B,NULL,&C1);CHKERRQ(ierr); 969076ba34aSJunchao Zhang ierr = MatProductSetType(C1,MATPRODUCT_AtB);CHKERRQ(ierr); 970076ba34aSJunchao Zhang ierr = MatProductSetFill(C1,product->fill);CHKERRQ(ierr); 971076ba34aSJunchao Zhang C1->product->api_user = product->api_user; 972076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C1);CHKERRQ(ierr); 973076ba34aSJunchao Zhang if (!C1->ops->productsymbolic) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C1->product->type]); 974076ba34aSJunchao Zhang ierr = (*C1->ops->productsymbolic)(C1);CHKERRQ(ierr); 975076ba34aSJunchao Zhang 976076ba34aSJunchao Zhang if (localB) {ierr = MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(C1,N,l2g,mm->C1_global);} 977076ba34aSJunchao Zhang else mm->C1_global = static_cast<Mat_SeqAIJKokkos*>(C1->spptr)->csrmat; /* the csrmat already uses global col ids */ 978076ba34aSJunchao Zhang 979076ba34aSJunchao Zhang /* C2 = Ao^t * B */ 980076ba34aSJunchao Zhang ierr = MatProductCreate(Ao,B,NULL,&C2);CHKERRQ(ierr); 981076ba34aSJunchao Zhang ierr = MatProductSetType(C2,MATPRODUCT_AtB);CHKERRQ(ierr); 982076ba34aSJunchao Zhang ierr = MatProductSetFill(C2,product->fill);CHKERRQ(ierr); 983076ba34aSJunchao Zhang C2->product->api_user = product->api_user; 984076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C2);CHKERRQ(ierr); 985076ba34aSJunchao Zhang if (!C2->ops->productsymbolic) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C2->product->type]); 986076ba34aSJunchao Zhang ierr = (*C2->ops->productsymbolic)(C2);CHKERRQ(ierr); 987076ba34aSJunchao Zhang 988076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosReduce(C2,MAT_INITIAL_MATRIX,localB,N,l2g,a->Mvctx,mm->sf,mm->abuf, 989076ba34aSJunchao Zhang mm->srcrowoffset,mm->dstrowoffset,mm->C2_global);CHKERRQ(ierr); 990076ba34aSJunchao Zhang 991076ba34aSJunchao Zhang mm->kh.create_spadd_handle(false); /* Input C1, C2 are NOT sorted, since B may be not */ 992076ba34aSJunchao Zhang KokkosSparse::spadd_symbolic(&mm->kh,mm->C1_global,mm->C2_global,mm->C_global); 993076ba34aSJunchao Zhang /* Have to do numeric since spadd_symbolic does not really populate column indices of the result matrix */ 994076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&mm->kh,(MatScalarType)1.0,mm->C1_global,(MatScalarType)1.0,mm->C2_global,mm->C_global); 995076ba34aSJunchao Zhang mm->C1 = C1; 996076ba34aSJunchao Zhang mm->C2 = C2; 997076ba34aSJunchao Zhang PetscFunctionReturn(0); 998076ba34aSJunchao Zhang } 999076ba34aSJunchao Zhang 1000076ba34aSJunchao Zhang PetscErrorCode MatProductNumeric_MPIAIJKokkos(Mat C) 1001076ba34aSJunchao Zhang { 1002076ba34aSJunchao Zhang PetscErrorCode ierr; 1003076ba34aSJunchao Zhang Mat_Product *product = C->product; 1004076ba34aSJunchao Zhang MatProductType ptype; 1005076ba34aSJunchao Zhang MatProductData_MPIAIJKokkos *mmdata; 1006076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 1007076ba34aSJunchao Zhang MatMatStruct_AB *ab; 1008076ba34aSJunchao Zhang MatMatStruct_AtB *atb; 1009076ba34aSJunchao Zhang Mat A,B,Ad,Ao,Bd,Bo; 1010076ba34aSJunchao Zhang const MatScalarType one = 1.0; /* Not use literal 1.0 directly, to avoid wrong template instantiation in KokkosSparse::spadd_numeric */ 1011076ba34aSJunchao Zhang 1012076ba34aSJunchao Zhang PetscFunctionBegin; 1013076ba34aSJunchao Zhang MatCheckProduct(C,1); 1014076ba34aSJunchao Zhang mmdata = static_cast<MatProductData_MPIAIJKokkos*>(product->data); 1015076ba34aSJunchao Zhang ptype = product->type; 1016076ba34aSJunchao Zhang A = product->A; 1017076ba34aSJunchao Zhang B = product->B; 1018076ba34aSJunchao Zhang Ad = static_cast<Mat_MPIAIJ*>(A->data)->A; 1019076ba34aSJunchao Zhang Ao = static_cast<Mat_MPIAIJ*>(A->data)->B; 1020076ba34aSJunchao Zhang Bd = static_cast<Mat_MPIAIJ*>(B->data)->A; 1021076ba34aSJunchao Zhang Bo = static_cast<Mat_MPIAIJ*>(B->data)->B; 1022076ba34aSJunchao Zhang 1023076ba34aSJunchao Zhang if (mmdata->reusesym) { /* We reached here through e.g., MatMatMult(A,B,MAT_INITIAL_MATRIX,..,C), where symbolic/numeric are combined */ 1024076ba34aSJunchao Zhang mmdata->reusesym = PETSC_FALSE; /* So that next time when user calls MatMatMult(E,F,MAT_REUSE_MATRIX,..,C), we still do numeric */ 1025076ba34aSJunchao Zhang ab = mmdata->mmAB; 1026076ba34aSJunchao Zhang atb = mmdata->mmAtB; 1027076ba34aSJunchao Zhang if (ab) { 1028076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(ab->C1->product->data)->reusesym = PETSC_FALSE; 1029076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(ab->C2->product->data)->reusesym = PETSC_FALSE; 1030076ba34aSJunchao Zhang } 1031076ba34aSJunchao Zhang if (atb) { 1032076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(atb->C1->product->data)->reusesym = PETSC_FALSE; 1033076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(atb->C2->product->data)->reusesym = PETSC_FALSE; 1034076ba34aSJunchao Zhang } 1035076ba34aSJunchao Zhang PetscFunctionReturn(0); 1036076ba34aSJunchao Zhang } 1037076ba34aSJunchao Zhang 1038076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 1039076ba34aSJunchao Zhang ab = mmdata->mmAB; 1040076ba34aSJunchao Zhang /* C1 = Ad * B_local */ 1041076ba34aSJunchao Zhang if (!ab->C1->ops->productnumeric || !ab->C2->ops->productnumeric) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing numeric op for MATPRODUCT_AB"); 1042076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_REUSE_MATRIX,NULL/*glob*/,&ab->B_local);CHKERRQ(ierr); 1043076ba34aSJunchao Zhang if (ab->C1->product->B != ab->B_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AB, internal mat product matrix C1->B has unexpectedly changed"); 1044076ba34aSJunchao Zhang if (ab->C1->product->A != Ad) {ierr = MatProductReplaceMats(Ad,NULL,NULL,ab->C1);CHKERRQ(ierr);} 1045076ba34aSJunchao Zhang ierr = (*ab->C1->ops->productnumeric)(ab->C1);CHKERRQ(ierr); 1046076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosBcast(ab->B_local,MAT_REUSE_MATRIX,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,ab->sf, 1047076ba34aSJunchao Zhang ab->abuf,ab->rows,ab->rowoffset,ab->B_other);CHKERRQ(ierr); 1048076ba34aSJunchao Zhang /* C2 = Ao * B_other */ 1049076ba34aSJunchao Zhang if (ab->C2->product->B != ab->B_other) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AB, internal mat product matrix C2->B has unexpectedly changed"); 1050076ba34aSJunchao Zhang if (ab->C1->product->A != Ao) {ierr = MatProductReplaceMats(Ao,NULL,NULL,ab->C2);CHKERRQ(ierr);} 1051076ba34aSJunchao Zhang ierr = (*ab->C2->ops->productnumeric)(ab->C2);CHKERRQ(ierr); 1052076ba34aSJunchao Zhang /* C = C1_global + C2_global */ 1053076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&ab->kh,one,ab->C1_global,one,ab->C2_global,ab->C_global); 1054076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(ab); 1055076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 1056076ba34aSJunchao Zhang atb = mmdata->mmAtB; 1057076ba34aSJunchao Zhang if (!atb->C1->ops->productnumeric || !atb->C2->ops->productnumeric) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing numeric op for MATPRODUCT_AtB"); 1058076ba34aSJunchao Zhang /* C1 = Ad^t * B_local */ 1059076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_REUSE_MATRIX,NULL/*glob*/,&atb->B_local);CHKERRQ(ierr); 1060076ba34aSJunchao Zhang if (atb->C1->product->B != atb->B_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AtB, internal mat product matrix C1->B has unexpectedly changed"); 1061076ba34aSJunchao Zhang if (atb->C1->product->A != Ad) {ierr = MatProductReplaceMats(Ad,NULL,NULL,atb->C1);CHKERRQ(ierr);} 1062076ba34aSJunchao Zhang ierr = (*atb->C1->ops->productnumeric)(atb->C1);CHKERRQ(ierr); 1063076ba34aSJunchao Zhang 1064076ba34aSJunchao Zhang /* C2 = Ao^t * B_local */ 1065076ba34aSJunchao Zhang if (atb->C2->product->B != atb->B_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AtB, internal mat product matrix C2->B has unexpectedly changed"); 1066076ba34aSJunchao Zhang if (atb->C2->product->A != Ao) {ierr = MatProductReplaceMats(Ao,NULL,NULL,atb->C2);CHKERRQ(ierr);} 1067076ba34aSJunchao Zhang ierr = (*atb->C2->ops->productnumeric)(atb->C2);CHKERRQ(ierr); 1068076ba34aSJunchao Zhang /* Form C2_global */ 1069076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosReduce(atb->C2,MAT_REUSE_MATRIX,PETSC_TRUE,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,atb->sf, 1070076ba34aSJunchao Zhang atb->abuf,atb->srcrowoffset,atb->dstrowoffset,atb->C2_global);CHKERRQ(ierr); 1071076ba34aSJunchao Zhang /* C = C1_global + C2_global */ 1072076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&atb->kh,one,atb->C1_global,one,atb->C2_global,atb->C_global); 1073076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1074076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { /* BtAB */ 1075076ba34aSJunchao Zhang ab = mmdata->mmAB; 1076076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_REUSE_MATRIX,NULL/*glob*/,&ab->B_local);CHKERRQ(ierr); 1077076ba34aSJunchao Zhang 1078076ba34aSJunchao Zhang /* ab->C1 = Ad * B_local */ 1079076ba34aSJunchao Zhang if (ab->C1->product->B != ab->B_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_PtAP, internal mat product matrix ab->C1->B has unexpectedly changed"); 1080076ba34aSJunchao Zhang if (ab->C1->product->A != Ad) {ierr = MatProductReplaceMats(Ad,NULL,NULL,ab->C1);CHKERRQ(ierr);} 1081076ba34aSJunchao Zhang ierr = (*ab->C1->ops->productnumeric)(ab->C1);CHKERRQ(ierr); 1082076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosBcast(ab->B_local,MAT_REUSE_MATRIX,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,ab->sf, 1083076ba34aSJunchao Zhang ab->abuf,ab->rows,ab->rowoffset,ab->B_other);CHKERRQ(ierr); 1084076ba34aSJunchao Zhang /* ab->C2 = Ao * B_other */ 1085076ba34aSJunchao Zhang if (ab->C2->product->A != Ao) {ierr = MatProductReplaceMats(Ao,NULL,NULL,ab->C2);CHKERRQ(ierr);} 1086076ba34aSJunchao Zhang ierr = (*ab->C2->ops->productnumeric)(ab->C2);CHKERRQ(ierr); /* C2 = Ao * B_other */ 1087076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&ab->kh,one,ab->C1_global,one,ab->C2_global,ab->C_global); 1088076ba34aSJunchao Zhang 1089076ba34aSJunchao Zhang /* atb->C1 = Bd^t * ab->C_petsc */ 1090076ba34aSJunchao Zhang atb = mmdata->mmAtB; 1091076ba34aSJunchao Zhang if (atb->C1->product->B != ab->C_petsc) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_PtAP, internal mat product matrix atb->C1->B has unexpectedly changed"); 1092076ba34aSJunchao Zhang if (atb->C1->product->A != Bd) {ierr = MatProductReplaceMats(Bd,NULL,NULL,atb->C1);CHKERRQ(ierr);} 1093076ba34aSJunchao Zhang ierr = (*atb->C1->ops->productnumeric)(atb->C1);CHKERRQ(ierr); 1094076ba34aSJunchao Zhang /* atb->C2 = Bo^t * ab->C_petsc */ 1095076ba34aSJunchao Zhang if (atb->C2->product->A != Bo) {ierr = MatProductReplaceMats(Bo,NULL,NULL,atb->C2);CHKERRQ(ierr);} 1096076ba34aSJunchao Zhang ierr = (*atb->C2->ops->productnumeric)(atb->C2);CHKERRQ(ierr); 1097076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosReduce(atb->C2,MAT_REUSE_MATRIX,PETSC_FALSE,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,atb->sf, 1098076ba34aSJunchao Zhang atb->abuf,atb->srcrowoffset,atb->dstrowoffset,atb->C2_global);CHKERRQ(ierr); 1099076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&atb->kh,one,atb->C1_global,one,atb->C2_global,atb->C_global); 1100076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1101076ba34aSJunchao Zhang } 1102076ba34aSJunchao Zhang /* Split C_global to form C */ 1103076ba34aSJunchao Zhang ierr = MatSetMPIAIJKokkosWithGlobalCSRMatrix(C,MAT_REUSE_MATRIX,mm->C_global,mm->Cdstart);CHKERRQ(ierr); 1104076ba34aSJunchao Zhang PetscFunctionReturn(0); 1105076ba34aSJunchao Zhang } 1106076ba34aSJunchao Zhang 1107076ba34aSJunchao Zhang PetscErrorCode MatProductSymbolic_MPIAIJKokkos(Mat C) 1108076ba34aSJunchao Zhang { 1109076ba34aSJunchao Zhang PetscErrorCode ierr; 1110076ba34aSJunchao Zhang Mat A,B; 1111076ba34aSJunchao Zhang Mat_Product *product = C->product; 1112076ba34aSJunchao Zhang MatProductType ptype; 1113076ba34aSJunchao Zhang MatProductData_MPIAIJKokkos *mmdata; 1114076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 1115076ba34aSJunchao Zhang IS glob = NULL; 1116076ba34aSJunchao Zhang const PetscInt *garray; 1117076ba34aSJunchao Zhang PetscInt m,n,M,N,sz; 1118076ba34aSJunchao Zhang ConstMatColIdxKokkosView l2g; /* map local col ids to global ones */ 1119076ba34aSJunchao Zhang 1120076ba34aSJunchao Zhang PetscFunctionBegin; 1121076ba34aSJunchao Zhang MatCheckProduct(C,1); 1122076ba34aSJunchao Zhang if (product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 1123076ba34aSJunchao Zhang ptype = product->type; 1124076ba34aSJunchao Zhang A = product->A; 1125076ba34aSJunchao Zhang B = product->B; 1126076ba34aSJunchao Zhang 1127076ba34aSJunchao Zhang switch (ptype) { 1128076ba34aSJunchao Zhang case MATPRODUCT_AB: m = A->rmap->n; n = B->cmap->n; M = A->rmap->N; N = B->cmap->N; break; 1129076ba34aSJunchao Zhang case MATPRODUCT_AtB: m = A->cmap->n; n = B->cmap->n; M = A->cmap->N; N = B->cmap->N; break; 1130076ba34aSJunchao Zhang case MATPRODUCT_PtAP: m = B->cmap->n; n = B->cmap->n; M = B->cmap->N; N = B->cmap->N; break; /* BtAB */ 1131076ba34aSJunchao Zhang default: SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Not for product type %s",MatProductTypes[ptype]); 1132076ba34aSJunchao Zhang } 1133076ba34aSJunchao Zhang 1134076ba34aSJunchao Zhang ierr = MatSetSizes(C,m,n,M,N);CHKERRQ(ierr); 1135076ba34aSJunchao Zhang ierr = PetscLayoutSetUp(C->rmap);CHKERRQ(ierr); 1136076ba34aSJunchao Zhang ierr = PetscLayoutSetUp(C->cmap);CHKERRQ(ierr); 1137076ba34aSJunchao Zhang ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 1138076ba34aSJunchao Zhang 1139076ba34aSJunchao Zhang mmdata = new MatProductData_MPIAIJKokkos(); 1140076ba34aSJunchao Zhang mmdata->reusesym = product->api_user; 1141076ba34aSJunchao Zhang 1142076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 1143076ba34aSJunchao Zhang mmdata->mmAB = new MatMatStruct_AB(); 1144076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AB(product,A,B,mmdata->mmAB);CHKERRQ(ierr); 1145076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(mmdata->mmAB); 1146076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 1147076ba34aSJunchao Zhang mmdata->mmAtB = new MatMatStruct_AtB(); 1148076ba34aSJunchao Zhang auto atb = mmdata->mmAtB; 1149076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_INITIAL_MATRIX,&glob,&atb->B_local);CHKERRQ(ierr); 1150076ba34aSJunchao Zhang ierr = ISGetIndices(glob,&garray);CHKERRQ(ierr); 1151076ba34aSJunchao Zhang ierr = ISGetSize(glob,&sz);CHKERRQ(ierr); 1152076ba34aSJunchao Zhang l2g = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),ConstMatColIdxKokkosViewHost(garray,sz)); 1153076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AtB(product,A,atb->B_local,PETSC_TRUE,N,l2g,atb);CHKERRQ(ierr); 1154076ba34aSJunchao Zhang ierr = ISRestoreIndices(glob,&garray);CHKERRQ(ierr); 1155076ba34aSJunchao Zhang ierr = ISDestroy(&glob);CHKERRQ(ierr); 1156076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1157076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { /* BtAB */ 1158076ba34aSJunchao Zhang mmdata->mmAB = new MatMatStruct_AB(); /* tmp=A*B */ 1159076ba34aSJunchao Zhang mmdata->mmAtB = new MatMatStruct_AtB(); /* C=B^t*tmp */ 1160076ba34aSJunchao Zhang auto ab = mmdata->mmAB; 1161076ba34aSJunchao Zhang auto atb = mmdata->mmAtB; 1162076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AB(product,A,B,ab);CHKERRQ(ierr); 1163076ba34aSJunchao Zhang auto tmp = new Mat_SeqAIJKokkos(ab->C_global); /* Memory will be owned by ab->C_petsc */ 1164076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,tmp,&ab->C_petsc);CHKERRQ(ierr); 1165076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AtB(product,B,ab->C_petsc,PETSC_FALSE,N,l2g/*not used*/,atb);CHKERRQ(ierr); 1166076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1167076ba34aSJunchao Zhang } 1168076ba34aSJunchao Zhang /* Split the C_global into petsc A, B format */ 1169076ba34aSJunchao Zhang ierr = MatSetMPIAIJKokkosWithGlobalCSRMatrix(C,MAT_INITIAL_MATRIX,mm->C_global,mm->Cdstart);CHKERRQ(ierr); 1170076ba34aSJunchao Zhang C->product->data = mmdata; 1171076ba34aSJunchao Zhang C->product->destroy = MatProductDataDestroy_MPIAIJKokkos; 1172076ba34aSJunchao Zhang C->ops->productnumeric = MatProductNumeric_MPIAIJKokkos; 1173076ba34aSJunchao Zhang PetscFunctionReturn(0); 1174076ba34aSJunchao Zhang } 1175076ba34aSJunchao Zhang 1176076ba34aSJunchao Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJKokkos(Mat mat) 1177076ba34aSJunchao Zhang { 1178076ba34aSJunchao Zhang PetscErrorCode ierr; 1179076ba34aSJunchao Zhang Mat_Product *product = mat->product; 1180076ba34aSJunchao Zhang PetscBool match = PETSC_FALSE; 1181076ba34aSJunchao Zhang PetscBool usecpu = PETSC_FALSE; 1182076ba34aSJunchao Zhang 1183076ba34aSJunchao Zhang PetscFunctionBegin; 1184076ba34aSJunchao Zhang MatCheckProduct(mat,1); 1185076ba34aSJunchao Zhang if (!product->A->boundtocpu && !product->B->boundtocpu) { 1186076ba34aSJunchao Zhang ierr = PetscObjectTypeCompare((PetscObject)product->B,((PetscObject)product->A)->type_name,&match);CHKERRQ(ierr); 1187076ba34aSJunchao Zhang } 1188076ba34aSJunchao Zhang if (match) { /* we can always fallback to the CPU if requested */ 1189076ba34aSJunchao Zhang switch (product->type) { 1190076ba34aSJunchao Zhang case MATPRODUCT_AB: 1191076ba34aSJunchao Zhang if (product->api_user) { 1192076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatMatMult","Mat");CHKERRQ(ierr); 1193076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matmatmult_backend_cpu","Use CPU code","MatMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1194076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1195076ba34aSJunchao Zhang } else { 1196076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatProduct_AB","Mat");CHKERRQ(ierr); 1197076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matproduct_ab_backend_cpu","Use CPU code","MatMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1198076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1199076ba34aSJunchao Zhang } 1200076ba34aSJunchao Zhang break; 1201076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1202076ba34aSJunchao Zhang if (product->api_user) { 1203076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatTransposeMatMult","Mat");CHKERRQ(ierr); 1204076ba34aSJunchao Zhang ierr = PetscOptionsBool("-mattransposematmult_backend_cpu","Use CPU code","MatTransposeMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1205076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1206076ba34aSJunchao Zhang } else { 1207076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatProduct_AtB","Mat");CHKERRQ(ierr); 1208076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matproduct_atb_backend_cpu","Use CPU code","MatTransposeMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1209076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1210076ba34aSJunchao Zhang } 1211076ba34aSJunchao Zhang break; 1212076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1213076ba34aSJunchao Zhang if (product->api_user) { 1214076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatPtAP","Mat");CHKERRQ(ierr); 1215076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matptap_backend_cpu","Use CPU code","MatPtAP",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1216076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1217076ba34aSJunchao Zhang } else { 1218076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatProduct_PtAP","Mat");CHKERRQ(ierr); 1219076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matproduct_ptap_backend_cpu","Use CPU code","MatPtAP",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1220076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1221076ba34aSJunchao Zhang } 1222076ba34aSJunchao Zhang break; 1223076ba34aSJunchao Zhang default: 1224076ba34aSJunchao Zhang break; 1225076ba34aSJunchao Zhang } 1226076ba34aSJunchao Zhang match = (PetscBool)!usecpu; 1227076ba34aSJunchao Zhang } 1228076ba34aSJunchao Zhang if (match) { 1229076ba34aSJunchao Zhang switch (product->type) { 1230076ba34aSJunchao Zhang case MATPRODUCT_AB: 1231076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1232076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1233076ba34aSJunchao Zhang mat->ops->productsymbolic = MatProductSymbolic_MPIAIJKokkos; 1234076ba34aSJunchao Zhang break; 1235076ba34aSJunchao Zhang default: 1236076ba34aSJunchao Zhang break; 1237076ba34aSJunchao Zhang } 1238076ba34aSJunchao Zhang } 1239076ba34aSJunchao Zhang /* fallback to MPIAIJ ops */ 1240076ba34aSJunchao Zhang if (!mat->ops->productsymbolic) { 1241076ba34aSJunchao Zhang ierr = MatProductSetFromOptions_MPIAIJ(mat);CHKERRQ(ierr); 1242076ba34aSJunchao Zhang } 1243076ba34aSJunchao Zhang PetscFunctionReturn(0); 1244076ba34aSJunchao Zhang } 1245076ba34aSJunchao Zhang 1246*42550becSJunchao Zhang /* std::upper_bound(): Given a sorted array, return index of the first element in range [first,last) whose value 1247*42550becSJunchao Zhang is greater than value, or last if there is no such element. 1248*42550becSJunchao Zhang */ 1249*42550becSJunchao Zhang PETSC_STATIC_INLINE PetscErrorCode PetscSortedIntUpperBound(PetscInt *array,PetscInt first,PetscInt last,PetscInt value,PetscInt *upper) 1250*42550becSJunchao Zhang { 1251*42550becSJunchao Zhang PetscInt it,step,count = last - first; 1252*42550becSJunchao Zhang 1253*42550becSJunchao Zhang PetscFunctionBegin; 1254*42550becSJunchao Zhang while (count > 0) { 1255*42550becSJunchao Zhang it = first; 1256*42550becSJunchao Zhang step = count / 2; 1257*42550becSJunchao Zhang it += step; 1258*42550becSJunchao Zhang if (!(value < array[it])) { 1259*42550becSJunchao Zhang first = ++it; 1260*42550becSJunchao Zhang count -= step + 1; 1261*42550becSJunchao Zhang } else count = step; 1262*42550becSJunchao Zhang } 1263*42550becSJunchao Zhang *upper = first; 1264*42550becSJunchao Zhang PetscFunctionReturn(0); 1265*42550becSJunchao Zhang } 1266*42550becSJunchao Zhang 1267*42550becSJunchao Zhang /* Merge two sets of sorted nonzero entries and return a CSR for the merged (sequential) matrix 1268*42550becSJunchao Zhang 1269*42550becSJunchao Zhang Input Parameters: 1270*42550becSJunchao Zhang 1271*42550becSJunchao Zhang j1,rowBegin1,rowEnd1,perm1,jmap1: describe the first set of nonzeros (Set1) 1272*42550becSJunchao Zhang j2,rowBegin2,rowEnd2,perm2,jmap2: describe the second set of nonzeros (Set2) 1273*42550becSJunchao Zhang 1274*42550becSJunchao Zhang mat: both sets' entries are on m rows, where m is the number of local rows of the matrix mat 1275*42550becSJunchao Zhang 1276*42550becSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 1277*42550becSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 1278*42550becSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 1279*42550becSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 1280*42550becSJunchao Zhang 1281*42550becSJunchao Zhang Similar for Set2. 1282*42550becSJunchao Zhang 1283*42550becSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 1284*42550becSJunchao Zhang 1285*42550becSJunchao Zhang Output Parameters: (memories are allocated by the caller) 1286*42550becSJunchao Zhang 1287*42550becSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 1288*42550becSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 1289*42550becSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 1290*42550becSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 1291*42550becSJunchao Zhang */ 1292*42550becSJunchao Zhang static PetscErrorCode MatMergeEntries_Internal(Mat mat,const PetscInt *j1,const PetscInt *j2,const PetscInt *rowBegin1,const PetscInt *rowEnd1, 1293*42550becSJunchao Zhang const PetscInt *rowBegin2,const PetscInt *rowEnd2,const MatRowMapKokkosViewHost& jmap1_h,const MatRowMapKokkosViewHost& jmap2_h, 1294*42550becSJunchao Zhang MatRowMapKokkosViewHost& imap1_h,MatRowMapKokkosViewHost& imap2_h,PetscInt *i,PetscInt *j) 1295*42550becSJunchao Zhang { 1296*42550becSJunchao Zhang PetscErrorCode ierr; 1297*42550becSJunchao Zhang PetscInt r,m,t,t1,t2,b1,e1,b2,e2; 1298*42550becSJunchao Zhang PetscInt *jmap1 = jmap1_h.data(),*jmap2 = jmap2_h.data(),*imap1 = imap1_h.data(),*imap2 = imap2_h.data(); 1299*42550becSJunchao Zhang 1300*42550becSJunchao Zhang PetscFunctionBegin; 1301*42550becSJunchao Zhang ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr); 1302*42550becSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 1303*42550becSJunchao Zhang i[0] = 0; 1304*42550becSJunchao Zhang for (r=0; r<m; r++) { /* Do row by row merging */ 1305*42550becSJunchao Zhang b1 = rowBegin1[r]; 1306*42550becSJunchao Zhang e1 = rowEnd1[r]; 1307*42550becSJunchao Zhang b2 = rowBegin2[r]; 1308*42550becSJunchao Zhang e2 = rowEnd2[r]; 1309*42550becSJunchao Zhang while (b1 < e1 && b2 < e2) { 1310*42550becSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 1311*42550becSJunchao Zhang j[t] = j1[b1]; 1312*42550becSJunchao Zhang imap1[t1] = t; 1313*42550becSJunchao Zhang imap2[t2] = t; 1314*42550becSJunchao Zhang b1 += jmap1[t1+1] - jmap1[t1]; /* Jump to next unique local nonzero */ 1315*42550becSJunchao Zhang b2 += jmap2[t2+1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 1316*42550becSJunchao Zhang t1++; t2++; t++; 1317*42550becSJunchao Zhang } else if (j1[b1] < j2[b2]) { 1318*42550becSJunchao Zhang j[t] = j1[b1]; 1319*42550becSJunchao Zhang imap1[t1] = t; 1320*42550becSJunchao Zhang b1 += jmap1[t1+1] - jmap1[t1]; 1321*42550becSJunchao Zhang t1++; t++; 1322*42550becSJunchao Zhang } else { 1323*42550becSJunchao Zhang j[t] = j2[b2]; 1324*42550becSJunchao Zhang imap2[t2] = t; 1325*42550becSJunchao Zhang b2 += jmap2[t2+1] - jmap2[t2]; 1326*42550becSJunchao Zhang t2++; t++; 1327*42550becSJunchao Zhang } 1328*42550becSJunchao Zhang } 1329*42550becSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 1330*42550becSJunchao Zhang while (b1 < e1) { 1331*42550becSJunchao Zhang j[t] = j1[b1]; 1332*42550becSJunchao Zhang imap1[t1] = t; 1333*42550becSJunchao Zhang b1 += jmap1[t1+1] - jmap1[t1]; 1334*42550becSJunchao Zhang t1++; t++; 1335*42550becSJunchao Zhang } 1336*42550becSJunchao Zhang while (b2 < e2) { 1337*42550becSJunchao Zhang j[t] = j2[b2]; 1338*42550becSJunchao Zhang imap2[t2] = t; 1339*42550becSJunchao Zhang b2 += jmap2[t2+1] - jmap2[t2]; 1340*42550becSJunchao Zhang t2++; t++; 1341*42550becSJunchao Zhang } 1342*42550becSJunchao Zhang i[r+1] = t; 1343*42550becSJunchao Zhang } 1344*42550becSJunchao Zhang PetscFunctionReturn(0); 1345*42550becSJunchao Zhang } 1346*42550becSJunchao Zhang 1347*42550becSJunchao Zhang /* Split a set/group of local entries into two subsets: those in the diagonal block and those in the off-diagonal block 1348*42550becSJunchao Zhang 1349*42550becSJunchao Zhang Input Parameters: 1350*42550becSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's assume its number of local rows is m. 1351*42550becSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 1352*42550becSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 1353*42550becSJunchao Zhang 1354*42550becSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 1355*42550becSJunchao Zhang i[] might contain negative indices at the beginning, which says the corresponding entries should be ignored in the splitting. 1356*42550becSJunchao Zhang 1357*42550becSJunchao Zhang Output Parameters: 1358*42550becSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 1359*42550becSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 1360*42550becSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries in row r of the diagonal block, 1361*42550becSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries in row r of the off-diagonal block. 1362*42550becSJunchao Zhang 1363*42550becSJunchao Zhang Aperm_h,Ajmap_h: They are Kokkos views on host. This routine will resize and fill them with proper values. Let's say Aperm = Aperm_h.data(), 1364*42550becSJunchao Zhang and Ajmap = Ajmap_h.data(). Aperm[] stores values from perm[] for entries in the diagonal block. Hence length of Aperm[] is the number 1365*42550becSJunchao Zhang of entries in the diagonal block, though those entries might have repeats (i.e., same 'i,j' pair). 1366*42550becSJunchao Zhang Ajmap[] stores the number of repeats of each unique nonzero in the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] is the number of 1367*42550becSJunchao Zhang repeats for the t-th unique nonzero in the diagonal block. Ajmap[0] is always 0. 1368*42550becSJunchao Zhang Length of Aperm_h is the number of nonzeros in the diagonal block. 1369*42550becSJunchao Zhang Length of Ajmap_h is the number of unique nonzeros in the diagonal block + 1. 1370*42550becSJunchao Zhang 1371*42550becSJunchao Zhang Bperm_h and Bjmap_h are similar to Aperm_h and Ajmap_h, respectively, but for the off-diagonal block. 1372*42550becSJunchao Zhang */ 1373*42550becSJunchao Zhang 1374*42550becSJunchao Zhang static PetscErrorCode MatSplitEntries_Internal(Mat mat,PetscInt n,const PetscInt i[], 1375*42550becSJunchao Zhang PetscInt j[],PetscInt perm[],PetscInt rowBegin[],PetscInt rowMid[],PetscInt rowEnd[], 1376*42550becSJunchao Zhang MatRowMapKokkosViewHost& Aperm_h,MatRowMapKokkosViewHost& Ajmap_h,MatRowMapKokkosViewHost& Bperm_h,MatRowMapKokkosViewHost& Bjmap_h) 1377*42550becSJunchao Zhang { 1378*42550becSJunchao Zhang PetscErrorCode ierr; 1379*42550becSJunchao Zhang PetscInt cstart,cend,rstart,rend,mid; 1380*42550becSJunchao Zhang PetscInt Atot=0,Btot=0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 1381*42550becSJunchao Zhang PetscInt Annz=0,Bnnz=0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 1382*42550becSJunchao Zhang PetscInt k,m,p,q,r,s,row,col; 1383*42550becSJunchao Zhang PetscInt *Aperm,*Bperm,*Ajmap,*Bjmap; 1384*42550becSJunchao Zhang 1385*42550becSJunchao Zhang PetscFunctionBegin; 1386*42550becSJunchao Zhang ierr = PetscLayoutGetRange(mat->rmap,&rstart,&rend);CHKERRQ(ierr); 1387*42550becSJunchao Zhang ierr = PetscLayoutGetRange(mat->cmap,&cstart,&cend);CHKERRQ(ierr); 1388*42550becSJunchao Zhang m = rend - rstart; 1389*42550becSJunchao Zhang 1390*42550becSJunchao Zhang for (k=0; k<n; k++) {if (i[k]>=0) break;} /* Skip negative rows */ 1391*42550becSJunchao Zhang 1392*42550becSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 1393*42550becSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 1394*42550becSJunchao Zhang */ 1395*42550becSJunchao Zhang while (k<n) { 1396*42550becSJunchao Zhang row = i[k]; 1397*42550becSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 1398*42550becSJunchao Zhang for (s=k; s<n; s++) if (i[s] != row) break; 1399*42550becSJunchao Zhang for (p=k; p<s; p++) { 1400*42550becSJunchao Zhang if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT; /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */ 1401*42550becSJunchao Zhang #if defined(PETSC_USE_DEBUG) 1402*42550becSJunchao Zhang else if (j[p] < 0 || j[p] > mat->cmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index %" PetscInt_FMT " is out of range",j[p]); 1403*42550becSJunchao Zhang #endif 1404*42550becSJunchao Zhang } 1405*42550becSJunchao Zhang ierr = PetscSortIntWithArray(s-k,j+k,perm+k);CHKERRQ(ierr); 1406*42550becSJunchao Zhang ierr = PetscSortedIntUpperBound(j,k,s,-1,&mid);CHKERRQ(ierr); /* Seperate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 1407*42550becSJunchao Zhang rowBegin[row-rstart] = k; 1408*42550becSJunchao Zhang rowMid[row-rstart] = mid; 1409*42550becSJunchao Zhang rowEnd[row-rstart] = s; 1410*42550becSJunchao Zhang 1411*42550becSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 1412*42550becSJunchao Zhang Atot += mid - k; 1413*42550becSJunchao Zhang Btot += s - mid; 1414*42550becSJunchao Zhang 1415*42550becSJunchao Zhang /* Count unique nonzeros of this diag/offdiag row */ 1416*42550becSJunchao Zhang for (p=k; p<mid;) { 1417*42550becSJunchao Zhang col = j[p]; 1418*42550becSJunchao Zhang do {j[p] += PETSC_MAX_INT; p++;} while (p<mid && j[p] == col); /* Revert the modified diagonal indices */ 1419*42550becSJunchao Zhang Annz++; 1420*42550becSJunchao Zhang } 1421*42550becSJunchao Zhang 1422*42550becSJunchao Zhang for (p=mid; p<s;) { 1423*42550becSJunchao Zhang col = j[p]; 1424*42550becSJunchao Zhang do {p++;} while (p<s && j[p] == col); 1425*42550becSJunchao Zhang Bnnz++; 1426*42550becSJunchao Zhang } 1427*42550becSJunchao Zhang k = s; 1428*42550becSJunchao Zhang } 1429*42550becSJunchao Zhang 1430*42550becSJunchao Zhang /* Resize views according to Atot, Btot, Annz, Bnnz */ 1431*42550becSJunchao Zhang Kokkos::resize(Aperm_h,Atot); 1432*42550becSJunchao Zhang Kokkos::resize(Ajmap_h,Annz+1); 1433*42550becSJunchao Zhang Kokkos::resize(Bperm_h,Btot); 1434*42550becSJunchao Zhang Kokkos::resize(Bjmap_h,Bnnz+1); 1435*42550becSJunchao Zhang Aperm = Aperm_h.data(); 1436*42550becSJunchao Zhang Bperm = Bperm_h.data(); 1437*42550becSJunchao Zhang Ajmap = Ajmap_h.data(); 1438*42550becSJunchao Zhang Bjmap = Bjmap_h.data(); 1439*42550becSJunchao Zhang Ajmap[0] = 0; 1440*42550becSJunchao Zhang Bjmap[0] = 0; 1441*42550becSJunchao Zhang 1442*42550becSJunchao Zhang /* Re-scan indices and copy diag/offdiag permuation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 1443*42550becSJunchao Zhang Atot = Btot = Annz = Bnnz = 0; 1444*42550becSJunchao Zhang for (r=0; r<m; r++) { 1445*42550becSJunchao Zhang k = rowBegin[r]; 1446*42550becSJunchao Zhang mid = rowMid[r]; 1447*42550becSJunchao Zhang s = rowEnd[r]; 1448*42550becSJunchao Zhang ierr = PetscArraycpy(Aperm+Atot,perm+k, mid-k);CHKERRQ(ierr); 1449*42550becSJunchao Zhang ierr = PetscArraycpy(Bperm+Btot,perm+mid,s-mid);CHKERRQ(ierr); 1450*42550becSJunchao Zhang Atot += mid - k; 1451*42550becSJunchao Zhang Btot += s - mid; 1452*42550becSJunchao Zhang 1453*42550becSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 1454*42550becSJunchao Zhang for (p=k; p<mid;) { 1455*42550becSJunchao Zhang col = j[p]; 1456*42550becSJunchao Zhang q = p; 1457*42550becSJunchao Zhang do {p++;} while (p<mid && j[p] == col); 1458*42550becSJunchao Zhang Ajmap[Annz+1] = Ajmap[Annz] + (p - q); 1459*42550becSJunchao Zhang Annz++; 1460*42550becSJunchao Zhang } 1461*42550becSJunchao Zhang 1462*42550becSJunchao Zhang for (p=mid; p<s;) { 1463*42550becSJunchao Zhang col = j[p]; 1464*42550becSJunchao Zhang q = p; 1465*42550becSJunchao Zhang do {p++;} while (p<s && j[p] == col); 1466*42550becSJunchao Zhang Bjmap[Bnnz+1] = Bjmap[Bnnz] + (p - q); 1467*42550becSJunchao Zhang Bnnz++; 1468*42550becSJunchao Zhang } 1469*42550becSJunchao Zhang } 1470*42550becSJunchao Zhang PetscFunctionReturn(0); 1471*42550becSJunchao Zhang } 1472*42550becSJunchao Zhang 1473*42550becSJunchao Zhang static PetscErrorCode MatSetPreallocationCOO_MPIAIJKokkos(Mat mat, PetscInt coo_n, const PetscInt coo_i[], const PetscInt coo_j[]) 1474*42550becSJunchao Zhang { 1475*42550becSJunchao Zhang PetscErrorCode ierr; 1476*42550becSJunchao Zhang MPI_Comm comm; 1477*42550becSJunchao Zhang PetscMPIInt rank,size; 1478*42550becSJunchao Zhang PetscInt m,n,M,N,k,p,q,rstart,rend,cstart,cend,rem; 1479*42550becSJunchao Zhang 1480*42550becSJunchao Zhang PetscFunctionBegin; 1481*42550becSJunchao Zhang ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 1482*42550becSJunchao Zhang ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 1483*42550becSJunchao Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 1484*42550becSJunchao Zhang 1485*42550becSJunchao Zhang ierr = PetscLayoutGetRange(mat->rmap,&rstart,&rend);CHKERRQ(ierr); 1486*42550becSJunchao Zhang ierr = PetscLayoutGetRange(mat->cmap,&cstart,&cend);CHKERRQ(ierr); 1487*42550becSJunchao Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 1488*42550becSJunchao Zhang ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr); 1489*42550becSJunchao Zhang 1490*42550becSJunchao Zhang /* ---------------------------------------------------------------------------*/ 1491*42550becSJunchao Zhang /* Sort (i,j) by row along with a permuation array, so that the to-be-ignored */ 1492*42550becSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 1493*42550becSJunchao Zhang /* ---------------------------------------------------------------------------*/ 1494*42550becSJunchao Zhang PetscInt n1 = coo_n,*i1,*j1,*perm1; /* Copies of input COOs along with a permutation array */ 1495*42550becSJunchao Zhang ierr = PetscMalloc3(n1,&i1,n1,&j1,n1,&perm1);CHKERRQ(ierr); 1496*42550becSJunchao Zhang ierr = PetscArraycpy(i1,coo_i,n1);CHKERRQ(ierr); /* Make a copy since we'll modify it */ 1497*42550becSJunchao Zhang ierr = PetscArraycpy(j1,coo_j,n1);CHKERRQ(ierr); 1498*42550becSJunchao Zhang for (k=0; k<n1; k++) perm1[k] = k; 1499*42550becSJunchao Zhang 1500*42550becSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 1501*42550becSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 1502*42550becSJunchao Zhang will have positive row indices. 1503*42550becSJunchao Zhang */ 1504*42550becSJunchao Zhang for (k=0; k<n1; k++) { 1505*42550becSJunchao Zhang if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT; /* e.g., -2^31, minimal to move them ahead */ 1506*42550becSJunchao Zhang else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */ 1507*42550becSJunchao Zhang } 1508*42550becSJunchao Zhang 1509*42550becSJunchao Zhang /* Sort by row; after that, [0,k) have ignored entires, [k,rem) have local rows and [rem,n1) have remote rows */ 1510*42550becSJunchao Zhang ierr = PetscSortIntWithArrayPair(n1,i1,j1,perm1);CHKERRQ(ierr); 1511*42550becSJunchao Zhang for (k=0; k<n1; k++) {if (i1[k] > PETSC_MIN_INT) break;} /* Advance k to the first entry we need to take care of */ 1512*42550becSJunchao Zhang ierr = PetscSortedIntUpperBound(i1,k,n1,rend-1-PETSC_MAX_INT,&rem);CHKERRQ(ierr); /* rem is upper bound of the last local row */ 1513*42550becSJunchao Zhang for (; k<rem; k++) i1[k] += PETSC_MAX_INT; /* Revert row indices of local rows*/ 1514*42550becSJunchao Zhang 1515*42550becSJunchao Zhang /* ---------------------------------------------------------------------------*/ 1516*42550becSJunchao Zhang /* Split local rows into diag/offdiag portions */ 1517*42550becSJunchao Zhang /* ---------------------------------------------------------------------------*/ 1518*42550becSJunchao Zhang PetscInt *rowBegin1,*rowMid1,*rowEnd1; 1519*42550becSJunchao Zhang MatRowMapKokkosViewHost Ajmap1_h,Aperm1_h,Bjmap1_h,Bperm1_h,Cperm1_h("Cperm1_h",n1-rem); 1520*42550becSJunchao Zhang 1521*42550becSJunchao Zhang ierr = PetscCalloc3(m,&rowBegin1,m,&rowMid1,m,&rowEnd1);CHKERRQ(ierr); 1522*42550becSJunchao Zhang ierr = MatSplitEntries_Internal(mat,rem,i1,j1,perm1,rowBegin1,rowMid1,rowEnd1,Aperm1_h,Ajmap1_h,Bperm1_h,Bjmap1_h);CHKERRQ(ierr); 1523*42550becSJunchao Zhang 1524*42550becSJunchao Zhang /* ---------------------------------------------------------------------------*/ 1525*42550becSJunchao Zhang /* Send remote rows to their owner */ 1526*42550becSJunchao Zhang /* ---------------------------------------------------------------------------*/ 1527*42550becSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 1528*42550becSJunchao Zhang PetscInt nsend = 0; 1529*42550becSJunchao Zhang PetscMPIInt *sendto; /* Of length nsend, storing remote ranks */ 1530*42550becSJunchao Zhang PetscInt *nentries; /* Of length nsend, storing number of entries to be sent to each remote rank */ 1531*42550becSJunchao Zhang const PetscInt *ranges; 1532*42550becSJunchao Zhang PetscInt maxNsend = size >= 128? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 1533*42550becSJunchao Zhang 1534*42550becSJunchao Zhang ierr = PetscLayoutGetRanges(mat->rmap,&ranges);CHKERRQ(ierr); 1535*42550becSJunchao Zhang ierr = PetscMalloc2(maxNsend,&sendto,maxNsend,&nentries);CHKERRQ(ierr); 1536*42550becSJunchao Zhang for (k=rem; k<n1;) { 1537*42550becSJunchao Zhang PetscMPIInt owner; 1538*42550becSJunchao Zhang PetscInt firstRow,lastRow; 1539*42550becSJunchao Zhang /* Locate a row range */ 1540*42550becSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 1541*42550becSJunchao Zhang ierr = PetscLayoutFindOwner(mat->rmap,firstRow,&owner);CHKERRQ(ierr); 1542*42550becSJunchao Zhang lastRow = ranges[owner+1]-1; /* last row of this owner */ 1543*42550becSJunchao Zhang 1544*42550becSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 1545*42550becSJunchao Zhang ierr = PetscSortedIntUpperBound(i1,k,n1,lastRow,&p);CHKERRQ(ierr); 1546*42550becSJunchao Zhang 1547*42550becSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 1548*42550becSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 1549*42550becSJunchao Zhang PetscMPIInt *sendto2; 1550*42550becSJunchao Zhang PetscInt *nentries2; 1551*42550becSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size/2) ? maxNsend*2 : size; 1552*42550becSJunchao Zhang ierr = PetscMalloc2(maxNsend2,&sendto2,maxNsend2,&nentries2);CHKERRQ(ierr); 1553*42550becSJunchao Zhang ierr = PetscArraycpy(sendto2,sendto,maxNsend);CHKERRQ(ierr); 1554*42550becSJunchao Zhang ierr = PetscArraycpy(nentries2,nentries2,maxNsend+1);CHKERRQ(ierr); 1555*42550becSJunchao Zhang ierr = PetscFree2(sendto,nentries2);CHKERRQ(ierr); 1556*42550becSJunchao Zhang sendto = sendto2; 1557*42550becSJunchao Zhang nentries = nentries2; 1558*42550becSJunchao Zhang maxNsend = maxNsend2; 1559*42550becSJunchao Zhang } 1560*42550becSJunchao Zhang sendto[nsend] = owner; 1561*42550becSJunchao Zhang nentries[nsend] = p - k; 1562*42550becSJunchao Zhang nsend++; 1563*42550becSJunchao Zhang k = p; 1564*42550becSJunchao Zhang } 1565*42550becSJunchao Zhang 1566*42550becSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 1567*42550becSJunchao Zhang PetscSF sf1; 1568*42550becSJunchao Zhang PetscInt nroots = 1,nroots2 = 0; 1569*42550becSJunchao Zhang PetscInt nleaves = nsend,nleaves2 = 0; 1570*42550becSJunchao Zhang PetscInt *offsets; 1571*42550becSJunchao Zhang PetscSFNode *iremote; 1572*42550becSJunchao Zhang 1573*42550becSJunchao Zhang ierr = PetscSFCreate(comm,&sf1);CHKERRQ(ierr); 1574*42550becSJunchao Zhang ierr = PetscMalloc1(nsend,&iremote);CHKERRQ(ierr); 1575*42550becSJunchao Zhang ierr = PetscMalloc1(nsend,&offsets);CHKERRQ(ierr); 1576*42550becSJunchao Zhang for (k=0; k<nsend; k++) { 1577*42550becSJunchao Zhang iremote[k].rank = sendto[k]; 1578*42550becSJunchao Zhang iremote[k].index = 0; 1579*42550becSJunchao Zhang nleaves2 += nentries[k]; 1580*42550becSJunchao Zhang } 1581*42550becSJunchao Zhang ierr = PetscSFSetGraph(sf1,nroots,nleaves,NULL,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 1582*42550becSJunchao Zhang ierr = PetscSFFetchAndOpWithMemTypeBegin(sf1,MPIU_INT,PETSC_MEMTYPE_HOST,&nroots2/*rootdata*/,PETSC_MEMTYPE_HOST,nentries/*leafdata*/,PETSC_MEMTYPE_HOST,offsets/*leafupdate*/,MPI_SUM);CHKERRQ(ierr); 1583*42550becSJunchao Zhang ierr = PetscSFFetchAndOpEnd(sf1,MPIU_INT,&nroots2,nentries,offsets,MPI_SUM);CHKERRQ(ierr); 1584*42550becSJunchao Zhang ierr = PetscSFDestroy(&sf1);CHKERRQ(ierr); 1585*42550becSJunchao Zhang 1586*42550becSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 1587*42550becSJunchao Zhang PetscSF sf2; 1588*42550becSJunchao Zhang nroots = nroots2; 1589*42550becSJunchao Zhang nleaves = nleaves2; 1590*42550becSJunchao Zhang ierr = PetscSFCreate(comm,&sf2);CHKERRQ(ierr); 1591*42550becSJunchao Zhang ierr = PetscSFSetFromOptions(sf2);CHKERRQ(ierr); 1592*42550becSJunchao Zhang ierr = PetscMalloc1(nleaves,&iremote);CHKERRQ(ierr); 1593*42550becSJunchao Zhang p = 0; 1594*42550becSJunchao Zhang for (k=0; k<nsend; k++) { 1595*42550becSJunchao Zhang for (q=0; q<nentries[k]; q++,p++) { 1596*42550becSJunchao Zhang iremote[p].rank = sendto[k]; 1597*42550becSJunchao Zhang iremote[p].index = offsets[k] + q; 1598*42550becSJunchao Zhang } 1599*42550becSJunchao Zhang } 1600*42550becSJunchao Zhang ierr = PetscSFSetGraph(sf2,nroots,nleaves,NULL,PETSC_USE_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 1601*42550becSJunchao Zhang 1602*42550becSJunchao Zhang /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permuation which will be used to fill leafdata */ 1603*42550becSJunchao Zhang ierr = PetscArraycpy(Cperm1_h.data(),perm1+rem,n1-rem);CHKERRQ(ierr); 1604*42550becSJunchao Zhang 1605*42550becSJunchao Zhang /* Send the remote COOs to their owner */ 1606*42550becSJunchao Zhang PetscInt n2 = nroots,*i2,*j2,*perm2; /* Buffers for received COOs from other ranks, along with a permutation array */ 1607*42550becSJunchao Zhang ierr = PetscMalloc3(n2,&i2,n2,&j2,n2,&perm2);CHKERRQ(ierr); 1608*42550becSJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(sf2,MPIU_INT,PETSC_MEMTYPE_HOST,i1+rem,PETSC_MEMTYPE_HOST,i2,MPI_REPLACE);CHKERRQ(ierr); 1609*42550becSJunchao Zhang ierr = PetscSFReduceEnd(sf2,MPIU_INT,i1+rem,i2,MPI_REPLACE);CHKERRQ(ierr); 1610*42550becSJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(sf2,MPIU_INT,PETSC_MEMTYPE_HOST,j1+rem,PETSC_MEMTYPE_HOST,j2,MPI_REPLACE);CHKERRQ(ierr); 1611*42550becSJunchao Zhang ierr = PetscSFReduceEnd(sf2,MPIU_INT,j1+rem,j2,MPI_REPLACE);CHKERRQ(ierr); 1612*42550becSJunchao Zhang 1613*42550becSJunchao Zhang ierr = PetscFree(offsets);CHKERRQ(ierr); 1614*42550becSJunchao Zhang ierr = PetscFree2(sendto,nentries);CHKERRQ(ierr); 1615*42550becSJunchao Zhang 1616*42550becSJunchao Zhang /* ---------------------------------------------------------------*/ 1617*42550becSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 1618*42550becSJunchao Zhang /* ---------------------------------------------------------------*/ 1619*42550becSJunchao Zhang for (k=0; k<n2; k++) perm2[k] = k; 1620*42550becSJunchao Zhang ierr = PetscSortIntWithArrayPair(n2,i2,j2,perm2);CHKERRQ(ierr); 1621*42550becSJunchao Zhang 1622*42550becSJunchao Zhang /* ---------------------------------------------------------------*/ 1623*42550becSJunchao Zhang /* Split received COOs into diag/offdiag portions */ 1624*42550becSJunchao Zhang /* ---------------------------------------------------------------*/ 1625*42550becSJunchao Zhang PetscInt *rowBegin2,*rowMid2,*rowEnd2; 1626*42550becSJunchao Zhang MatRowMapKokkosViewHost Ajmap2_h,Aperm2_h,Bjmap2_h,Bperm2_h; 1627*42550becSJunchao Zhang 1628*42550becSJunchao Zhang ierr = PetscCalloc3(m,&rowBegin2,m,&rowMid2,m,&rowEnd2);CHKERRQ(ierr); 1629*42550becSJunchao Zhang ierr = MatSplitEntries_Internal(mat,n2,i2,j2,perm2,rowBegin2,rowMid2,rowEnd2,Aperm2_h,Ajmap2_h,Bperm2_h,Bjmap2_h);CHKERRQ(ierr); 1630*42550becSJunchao Zhang 1631*42550becSJunchao Zhang /* --------------------------------------------------------------------------*/ 1632*42550becSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 1633*42550becSJunchao Zhang /* --------------------------------------------------------------------------*/ 1634*42550becSJunchao Zhang PetscInt Annz1,Annz2,Bnnz1,Bnnz2; 1635*42550becSJunchao Zhang PetscInt *Ai,*Aj,*Bi,*Bj; 1636*42550becSJunchao Zhang 1637*42550becSJunchao Zhang Annz1 = Ajmap1_h.extent(0)-1; /* Number of unique local nonzeros in the diagonal block */ 1638*42550becSJunchao Zhang Annz2 = Ajmap2_h.extent(0)-1; /* Number of unique received nonzeros in the diagonal block */ 1639*42550becSJunchao Zhang Bnnz1 = Bjmap1_h.extent(0)-1; /* Similar, but for the off-diagonal block */ 1640*42550becSJunchao Zhang Bnnz2 = Bjmap2_h.extent(0)-1; 1641*42550becSJunchao Zhang ierr = PetscMalloc1(m+1,&Ai);CHKERRQ(ierr); 1642*42550becSJunchao Zhang ierr = PetscMalloc1(m+1,&Bi);CHKERRQ(ierr); 1643*42550becSJunchao Zhang ierr = PetscMalloc1(Annz1+Annz2,&Aj);CHKERRQ(ierr); /* Since local and remote entries might have dups, we might allocate excess memory */ 1644*42550becSJunchao Zhang ierr = PetscMalloc1(Bnnz1+Bnnz2,&Bj);CHKERRQ(ierr); 1645*42550becSJunchao Zhang 1646*42550becSJunchao Zhang MatRowMapKokkosViewHost Aimap1_h("Aimpa1",Annz1),Aimap2_h("Aimpa2",Annz2),Bimap1_h("Bimap1",Bnnz1),Bimap2_h("Bimap2",Bnnz2); 1647*42550becSJunchao Zhang ierr = MatMergeEntries_Internal(mat,j1,j2,rowBegin1,rowMid1,rowBegin2,rowMid2,Ajmap1_h,Ajmap2_h,Aimap1_h,Aimap2_h,Ai,Aj);CHKERRQ(ierr); 1648*42550becSJunchao Zhang ierr = MatMergeEntries_Internal(mat,j1,j2,rowMid1, rowEnd1,rowMid2, rowEnd2,Bjmap1_h,Bjmap2_h,Bimap1_h,Bimap2_h,Bi,Bj);CHKERRQ(ierr); 1649*42550becSJunchao Zhang ierr = PetscFree3(rowBegin1,rowMid1,rowEnd1);CHKERRQ(ierr); 1650*42550becSJunchao Zhang ierr = PetscFree3(rowBegin2,rowMid2,rowEnd2);CHKERRQ(ierr); 1651*42550becSJunchao Zhang ierr = PetscFree3(i1,j1,perm1);CHKERRQ(ierr); 1652*42550becSJunchao Zhang ierr = PetscFree3(i2,j2,perm2);CHKERRQ(ierr); 1653*42550becSJunchao Zhang 1654*42550becSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 1655*42550becSJunchao Zhang PetscInt Annz = Ai[m]; 1656*42550becSJunchao Zhang PetscInt Bnnz = Bi[m]; 1657*42550becSJunchao Zhang if (Annz < Annz1 + Annz2) { 1658*42550becSJunchao Zhang PetscInt *Aj_new; 1659*42550becSJunchao Zhang ierr = PetscMalloc1(Annz,&Aj_new);CHKERRQ(ierr); 1660*42550becSJunchao Zhang ierr = PetscArraycpy(Aj_new,Aj,Annz);CHKERRQ(ierr); 1661*42550becSJunchao Zhang ierr = PetscFree(Aj);CHKERRQ(ierr); 1662*42550becSJunchao Zhang Aj = Aj_new; 1663*42550becSJunchao Zhang } 1664*42550becSJunchao Zhang 1665*42550becSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 1666*42550becSJunchao Zhang PetscInt *Bj_new; 1667*42550becSJunchao Zhang ierr = PetscMalloc1(Bnnz,&Bj_new);CHKERRQ(ierr); 1668*42550becSJunchao Zhang ierr = PetscArraycpy(Bj_new,Bj,Bnnz);CHKERRQ(ierr); 1669*42550becSJunchao Zhang ierr = PetscFree(Bj);CHKERRQ(ierr); 1670*42550becSJunchao Zhang Bj = Bj_new; 1671*42550becSJunchao Zhang } 1672*42550becSJunchao Zhang 1673*42550becSJunchao Zhang /* --------------------------------------------------------------------------------*/ 1674*42550becSJunchao Zhang /* Create a MPIAIJKOKKOS newmat with CSRs of A and B, then replace mat with newmat */ 1675*42550becSJunchao Zhang /* --------------------------------------------------------------------------------*/ 1676*42550becSJunchao Zhang Mat newmat; 1677*42550becSJunchao Zhang PetscScalar *Aa,*Ba; 1678*42550becSJunchao Zhang Mat_MPIAIJ *mpiaij; 1679*42550becSJunchao Zhang Mat_SeqAIJ *a,*b; 1680*42550becSJunchao Zhang 1681*42550becSJunchao Zhang ierr = PetscMalloc1(Annz,&Aa);CHKERRQ(ierr); 1682*42550becSJunchao Zhang ierr = PetscMalloc1(Bnnz,&Ba);CHKERRQ(ierr); 1683*42550becSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 1684*42550becSJunchao Zhang if (cstart) {for (k=0; k<Annz; k++) Aj[k] -= cstart;} 1685*42550becSJunchao Zhang ierr = MatCreateMPIAIJWithSplitArrays(comm,m,n,M,N,Ai,Aj,Aa,Bi,Bj,Ba,&newmat);CHKERRQ(ierr); 1686*42550becSJunchao Zhang mpiaij = (Mat_MPIAIJ*)newmat->data; 1687*42550becSJunchao Zhang a = (Mat_SeqAIJ*)mpiaij->A->data; 1688*42550becSJunchao Zhang b = (Mat_SeqAIJ*)mpiaij->B->data; 1689*42550becSJunchao Zhang a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */ 1690*42550becSJunchao Zhang a->free_a = b->free_a = PETSC_TRUE; 1691*42550becSJunchao Zhang a->free_ij = b->free_ij = PETSC_TRUE; 1692*42550becSJunchao Zhang ierr = MatConvert(newmat,MATMPIAIJKOKKOS,MAT_INPLACE_MATRIX,&newmat);CHKERRQ(ierr); 1693*42550becSJunchao Zhang ierr = MatHeaderMerge(mat,&newmat);CHKERRQ(ierr); 1694*42550becSJunchao Zhang ierr = MatZeroEntries(mat);CHKERRQ(ierr); /* Zero matrix on device */ 1695*42550becSJunchao Zhang mpiaij = (Mat_MPIAIJ*)mat->data; 1696*42550becSJunchao Zhang mpiaij->spptr = new Mat_MPIAIJKokkos(n1,sf2,nroots,nleaves,Annz1,Annz2,Bnnz1,Bnnz2, 1697*42550becSJunchao Zhang Aimap1_h,Aimap2_h,Bimap1_h,Bimap2_h, 1698*42550becSJunchao Zhang Ajmap1_h,Ajmap2_h,Bjmap1_h,Bjmap2_h, 1699*42550becSJunchao Zhang Aperm1_h,Aperm2_h,Bperm1_h,Bperm2_h,Cperm1_h); 1700*42550becSJunchao Zhang ierr = PetscSFDestroy(&sf2);CHKERRQ(ierr); /* ctor of Mat_MPIAIJKokkos already took a reference of sf3 */ 1701*42550becSJunchao Zhang PetscFunctionReturn(0); 1702*42550becSJunchao Zhang } 1703*42550becSJunchao Zhang 1704*42550becSJunchao Zhang static PetscErrorCode MatSetValuesCOO_MPIAIJKokkos(Mat mat,const PetscScalar v[],InsertMode imode) 1705*42550becSJunchao Zhang { 1706*42550becSJunchao Zhang PetscErrorCode ierr; 1707*42550becSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 1708*42550becSJunchao Zhang Mat_MPIAIJKokkos *mpikok = static_cast<Mat_MPIAIJKokkos*>(mpiaij->spptr); 1709*42550becSJunchao Zhang Mat A = mpiaij->A,B = mpiaij->B; 1710*42550becSJunchao Zhang PetscInt Annz1 = mpikok->Annz1,Annz2 = mpikok->Annz2,Bnnz1 = mpikok->Bnnz1,Bnnz2 = mpikok->Bnnz2; 1711*42550becSJunchao Zhang MatScalarKokkosView Aa,Ba; 1712*42550becSJunchao Zhang ConstMatScalarKokkosView v1; 1713*42550becSJunchao Zhang MatScalarKokkosView& vsend = mpikok->sendbuf_d; 1714*42550becSJunchao Zhang const MatScalarKokkosView& v2 = mpikok->recvbuf_d; 1715*42550becSJunchao Zhang const MatRowMapKokkosView& Ajmap1 = mpikok->Ajmap1_d,Ajmap2 = mpikok->Ajmap2_d,Aimap1 = mpikok->Aimap1_d,Aimap2 = mpikok->Aimap2_d; 1716*42550becSJunchao Zhang const MatRowMapKokkosView& Bjmap1 = mpikok->Bjmap1_d,Bjmap2 = mpikok->Bjmap2_d,Bimap1 = mpikok->Bimap1_d,Bimap2 = mpikok->Bimap2_d; 1717*42550becSJunchao Zhang const MatRowMapKokkosView& Aperm1 = mpikok->Aperm1_d,Aperm2 = mpikok->Aperm2_d,Bperm1 = mpikok->Bperm1_d,Bperm2 = mpikok->Bperm2_d; 1718*42550becSJunchao Zhang const MatRowMapKokkosView& Cperm1 = mpikok->Cperm1_d; 1719*42550becSJunchao Zhang PetscMemType memtype; 1720*42550becSJunchao Zhang 1721*42550becSJunchao Zhang PetscFunctionBegin; 1722*42550becSJunchao Zhang if (!v) { /* NULL v means an all zero array */ 1723*42550becSJunchao Zhang ierr = MatZeroEntries(mat);CHKERRQ(ierr); 1724*42550becSJunchao Zhang PetscFunctionReturn(0); 1725*42550becSJunchao Zhang } 1726*42550becSJunchao Zhang 1727*42550becSJunchao Zhang ierr = PetscGetMemType(v,&memtype);CHKERRQ(ierr); 1728*42550becSJunchao Zhang if (PetscMemTypeHost(memtype)) { /* If user gave v[] in host, we need to copy it to device if any */ 1729*42550becSJunchao Zhang v1 = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),ConstMatScalarKokkosViewHost(v,mpikok->coo_n)); 1730*42550becSJunchao Zhang } else { 1731*42550becSJunchao Zhang v1 = ConstMatScalarKokkosView(v,mpikok->coo_n); /* Directly use v[]'s memory */ 1732*42550becSJunchao Zhang } 1733*42550becSJunchao Zhang 1734*42550becSJunchao Zhang ierr = MatSeqAIJGetKokkosView(A,&Aa);CHKERRQ(ierr); /* Might read and write matrix values */ 1735*42550becSJunchao Zhang ierr = MatSeqAIJGetKokkosView(B,&Ba);CHKERRQ(ierr); 1736*42550becSJunchao Zhang if (imode == INSERT_VALUES) { 1737*42550becSJunchao Zhang Kokkos::deep_copy(Aa,0.0); /* Zero matrix values since INSERT_VALUES still requires summing replicated values in v[] */ 1738*42550becSJunchao Zhang Kokkos::deep_copy(Ba,0.0); 1739*42550becSJunchao Zhang } 1740*42550becSJunchao Zhang 1741*42550becSJunchao Zhang /* Pack entries to be sent to remote */ 1742*42550becSJunchao Zhang Kokkos::parallel_for(vsend.extent(0),KOKKOS_LAMBDA(const PetscInt i) {vsend(i) = v1(Cperm1(i));}); 1743*42550becSJunchao Zhang 1744*42550becSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 1745*42550becSJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(mpikok->coo_sf,MPIU_SCALAR,PETSC_MEMTYPE_KOKKOS,vsend.data(),PETSC_MEMTYPE_KOKKOS,v2.data(),MPI_REPLACE);CHKERRQ(ierr); 1746*42550becSJunchao Zhang /* Add local entries to A and B */ 1747*42550becSJunchao Zhang Kokkos::parallel_for(Annz1,KOKKOS_LAMBDA(const PetscInt i) {for (PetscInt k=Ajmap1(i); k<Ajmap1(i+1); k++) Aa(Aimap1(i)) += v1(Aperm1(k));}); 1748*42550becSJunchao Zhang Kokkos::parallel_for(Bnnz1,KOKKOS_LAMBDA(const PetscInt i) {for (PetscInt k=Bjmap1(i); k<Bjmap1(i+1); k++) Ba(Bimap1(i)) += v1(Bperm1(k));}); 1749*42550becSJunchao Zhang ierr = PetscSFReduceEnd(mpikok->coo_sf,MPIU_SCALAR,vsend.data(),v2.data(),MPI_REPLACE);CHKERRQ(ierr); 1750*42550becSJunchao Zhang 1751*42550becSJunchao Zhang /* Add received remote entries to A and B */ 1752*42550becSJunchao Zhang Kokkos::parallel_for(Annz2,KOKKOS_LAMBDA(const PetscInt i) {for (PetscInt k=Ajmap2(i); k<Ajmap2(i+1); k++) Aa(Aimap2(i)) += v2(Aperm2(k));}); 1753*42550becSJunchao Zhang Kokkos::parallel_for(Bnnz2,KOKKOS_LAMBDA(const PetscInt i) {for (PetscInt k=Bjmap2(i); k<Bjmap2(i+1); k++) Ba(Bimap2(i)) += v2(Bperm2(k));}); 1754*42550becSJunchao Zhang 1755*42550becSJunchao Zhang ierr = MatSeqAIJRestoreKokkosView(A,&Aa);CHKERRQ(ierr); 1756*42550becSJunchao Zhang ierr = MatSeqAIJRestoreKokkosView(B,&Ba);CHKERRQ(ierr); 1757*42550becSJunchao Zhang 1758*42550becSJunchao Zhang ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1759*42550becSJunchao Zhang ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1760*42550becSJunchao Zhang PetscFunctionReturn(0); 1761*42550becSJunchao Zhang } 1762*42550becSJunchao Zhang 1763076ba34aSJunchao Zhang PetscErrorCode MatDestroy_MPIAIJKokkos(Mat A) 1764076ba34aSJunchao Zhang { 1765076ba34aSJunchao Zhang PetscErrorCode ierr; 1766*42550becSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)A->data; 1767076ba34aSJunchao Zhang 1768076ba34aSJunchao Zhang PetscFunctionBegin; 1769076ba34aSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1770076ba34aSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJGetLocalMatMerge_C",NULL);CHKERRQ(ierr); 1771*42550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetPreallocationCOO_C", NULL);CHKERRQ(ierr); 1772*42550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetValuesCOO_C", NULL);CHKERRQ(ierr); 1773*42550becSJunchao Zhang delete (Mat_MPIAIJKokkos*)mpiaij->spptr; 1774076ba34aSJunchao Zhang ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr); 1775076ba34aSJunchao Zhang PetscFunctionReturn(0); 1776076ba34aSJunchao Zhang } 1777076ba34aSJunchao Zhang 17788c3ff71bSJunchao Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat A, MatType mtype, MatReuse reuse, Mat* newmat) 17798c3ff71bSJunchao Zhang { 17808c3ff71bSJunchao Zhang PetscErrorCode ierr; 17818c3ff71bSJunchao Zhang Mat B; 1782076ba34aSJunchao Zhang Mat_MPIAIJ *a; 17838c3ff71bSJunchao Zhang 17848c3ff71bSJunchao Zhang PetscFunctionBegin; 17858c3ff71bSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 17868c3ff71bSJunchao Zhang ierr = MatDuplicate(A,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 17878c3ff71bSJunchao Zhang } else if (reuse == MAT_REUSE_MATRIX) { 17888c3ff71bSJunchao Zhang ierr = MatCopy(A,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 17898c3ff71bSJunchao Zhang } 17908c3ff71bSJunchao Zhang B = *newmat; 17918c3ff71bSJunchao Zhang 17926f3d89d0SStefano Zampini B->boundtocpu = PETSC_FALSE; 17938c3ff71bSJunchao Zhang ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 17948c3ff71bSJunchao Zhang ierr = PetscStrallocpy(VECKOKKOS,&B->defaultvectype);CHKERRQ(ierr); 17953d0639e7SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIAIJKOKKOS);CHKERRQ(ierr); 17968c3ff71bSJunchao Zhang 1797076ba34aSJunchao Zhang a = static_cast<Mat_MPIAIJ*>(A->data); 1798076ba34aSJunchao Zhang if (a->A) {ierr = MatSetType(a->A,MATSEQAIJKOKKOS);CHKERRQ(ierr);} 1799076ba34aSJunchao Zhang if (a->B) {ierr = MatSetType(a->B,MATSEQAIJKOKKOS);CHKERRQ(ierr);} 1800076ba34aSJunchao Zhang if (a->lvec) {ierr = VecSetType(a->lvec,VECSEQKOKKOS);CHKERRQ(ierr);} 1801076ba34aSJunchao Zhang 18028c3ff71bSJunchao Zhang B->ops->assemblyend = MatAssemblyEnd_MPIAIJKokkos; 18038c3ff71bSJunchao Zhang B->ops->mult = MatMult_MPIAIJKokkos; 18048c3ff71bSJunchao Zhang B->ops->multadd = MatMultAdd_MPIAIJKokkos; 18058c3ff71bSJunchao Zhang B->ops->multtranspose = MatMultTranspose_MPIAIJKokkos; 1806076ba34aSJunchao Zhang B->ops->productsetfromoptions = MatProductSetFromOptions_MPIAIJKokkos; 1807076ba34aSJunchao Zhang B->ops->destroy = MatDestroy_MPIAIJKokkos; 18088c3ff71bSJunchao Zhang 18093d0639e7SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIAIJSetPreallocation_C",MatMPIAIJSetPreallocation_MPIAIJKokkos);CHKERRQ(ierr); 1810*42550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIAIJGetLocalMatMerge_C",MatMPIAIJGetLocalMatMerge_MPIAIJKokkos);CHKERRQ(ierr); 1811*42550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJKokkos);CHKERRQ(ierr); 1812*42550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJKokkos);CHKERRQ(ierr); 18138c3ff71bSJunchao Zhang PetscFunctionReturn(0); 18148c3ff71bSJunchao Zhang } 18158c3ff71bSJunchao Zhang 18168c3ff71bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJKokkos(Mat A) 18178c3ff71bSJunchao Zhang { 18188c3ff71bSJunchao Zhang PetscErrorCode ierr; 18198c3ff71bSJunchao Zhang 18208c3ff71bSJunchao Zhang PetscFunctionBegin; 18218c3ff71bSJunchao Zhang ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr); 18228c3ff71bSJunchao Zhang ierr = MatCreate_MPIAIJ(A);CHKERRQ(ierr); 18238c3ff71bSJunchao Zhang ierr = MatConvert_MPIAIJ_MPIAIJKokkos(A,MATMPIAIJKOKKOS,MAT_INPLACE_MATRIX,&A);CHKERRQ(ierr); 18248c3ff71bSJunchao Zhang PetscFunctionReturn(0); 18258c3ff71bSJunchao Zhang } 18268c3ff71bSJunchao Zhang 18278c3ff71bSJunchao Zhang /*@C 18288c3ff71bSJunchao Zhang MatCreateAIJKokkos - Creates a sparse matrix in AIJ (compressed row) format 18298c3ff71bSJunchao Zhang (the default parallel PETSc format). This matrix will ultimately pushed down 18308c3ff71bSJunchao Zhang to Kokkos for calculations. For good matrix 18318c3ff71bSJunchao Zhang assembly performance the user should preallocate the matrix storage by setting 18328c3ff71bSJunchao Zhang the parameter nz (or the array nnz). By setting these parameters accurately, 18338c3ff71bSJunchao Zhang performance during matrix assembly can be increased by more than a factor of 50. 18348c3ff71bSJunchao Zhang 18358c3ff71bSJunchao Zhang Collective 18368c3ff71bSJunchao Zhang 18378c3ff71bSJunchao Zhang Input Parameters: 18388c3ff71bSJunchao Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 18398c3ff71bSJunchao Zhang . m - number of rows 18408c3ff71bSJunchao Zhang . n - number of columns 18418c3ff71bSJunchao Zhang . nz - number of nonzeros per row (same for all rows) 18428c3ff71bSJunchao Zhang - nnz - array containing the number of nonzeros in the various rows 18438c3ff71bSJunchao Zhang (possibly different for each row) or NULL 18448c3ff71bSJunchao Zhang 18458c3ff71bSJunchao Zhang Output Parameter: 18468c3ff71bSJunchao Zhang . A - the matrix 18478c3ff71bSJunchao Zhang 18488c3ff71bSJunchao Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 18498c3ff71bSJunchao Zhang MatXXXXSetPreallocation() paradigm instead of this routine directly. 18508c3ff71bSJunchao Zhang [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 18518c3ff71bSJunchao Zhang 18528c3ff71bSJunchao Zhang Notes: 18538c3ff71bSJunchao Zhang If nnz is given then nz is ignored 18548c3ff71bSJunchao Zhang 18558c3ff71bSJunchao Zhang The AIJ format (also called the Yale sparse matrix format or 18568c3ff71bSJunchao Zhang compressed row storage), is fully compatible with standard Fortran 77 18578c3ff71bSJunchao Zhang storage. That is, the stored row and column indices can begin at 18588c3ff71bSJunchao Zhang either one (as in Fortran) or zero. See the users' manual for details. 18598c3ff71bSJunchao Zhang 18608c3ff71bSJunchao Zhang Specify the preallocated storage with either nz or nnz (not both). 18618c3ff71bSJunchao Zhang Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 18628c3ff71bSJunchao Zhang allocation. For large problems you MUST preallocate memory or you 18638c3ff71bSJunchao Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 18648c3ff71bSJunchao Zhang 18658c3ff71bSJunchao Zhang By default, this format uses inodes (identical nodes) when possible, to 18668c3ff71bSJunchao Zhang improve numerical efficiency of matrix-vector products and solves. We 18678c3ff71bSJunchao Zhang search for consecutive rows with the same nonzero structure, thereby 18688c3ff71bSJunchao Zhang reusing matrix information to achieve increased efficiency. 18698c3ff71bSJunchao Zhang 18708c3ff71bSJunchao Zhang Level: intermediate 18718c3ff71bSJunchao Zhang 18728c3ff71bSJunchao Zhang .seealso: MatCreate(), MatCreateAIJ(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ(), MATMPIAIJKOKKOS, MATAIJKokkos 18738c3ff71bSJunchao Zhang @*/ 18748c3ff71bSJunchao Zhang PetscErrorCode MatCreateAIJKokkos(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 18758c3ff71bSJunchao Zhang { 18768c3ff71bSJunchao Zhang PetscErrorCode ierr; 18778c3ff71bSJunchao Zhang PetscMPIInt size; 18788c3ff71bSJunchao Zhang 18798c3ff71bSJunchao Zhang PetscFunctionBegin; 18808c3ff71bSJunchao Zhang ierr = MatCreate(comm,A);CHKERRQ(ierr); 18818c3ff71bSJunchao Zhang ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1882ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 18838c3ff71bSJunchao Zhang if (size > 1) { 18848c3ff71bSJunchao Zhang ierr = MatSetType(*A,MATMPIAIJKOKKOS);CHKERRQ(ierr); 18858c3ff71bSJunchao Zhang ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 18868c3ff71bSJunchao Zhang } else { 18878c3ff71bSJunchao Zhang ierr = MatSetType(*A,MATSEQAIJKOKKOS);CHKERRQ(ierr); 18888c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr); 18898c3ff71bSJunchao Zhang } 18908c3ff71bSJunchao Zhang PetscFunctionReturn(0); 18918c3ff71bSJunchao Zhang } 18928c3ff71bSJunchao Zhang 1893a587d139SMark // get GPU pointer to stripped down Mat. For both Seq and MPI Mat. 1894042217e8SBarry Smith PetscErrorCode MatKokkosGetDeviceMatWrite(Mat A, PetscSplitCSRDataStructure *B) 1895a587d139SMark { 1896a587d139SMark PetscMPIInt size,rank; 1897a587d139SMark MPI_Comm comm; 1898a587d139SMark PetscErrorCode ierr; 1899042217e8SBarry Smith PetscSplitCSRDataStructure d_mat=NULL; 1900a587d139SMark 1901a587d139SMark PetscFunctionBegin; 1902a587d139SMark ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 190355b25c41SPierre Jolivet ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 190455b25c41SPierre Jolivet ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 1905a587d139SMark if (size == 1) { 1906a587d139SMark ierr = MatSeqAIJKokkosGetDeviceMat(A,&d_mat);CHKERRQ(ierr); 1907fc76dfabSMark Adams ierr = MatSeqAIJKokkosModifyDevice(A);CHKERRQ(ierr); /* Since we are going to modify matrix values on device */ 1908a587d139SMark } else { 1909a587d139SMark Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 1910a587d139SMark ierr = MatSeqAIJKokkosGetDeviceMat(aij->A,&d_mat);CHKERRQ(ierr); 1911fc76dfabSMark Adams ierr = MatSeqAIJKokkosModifyDevice(aij->A);CHKERRQ(ierr); 1912fc76dfabSMark Adams ierr = MatSeqAIJKokkosModifyDevice(aij->B);CHKERRQ(ierr); 1913a587d139SMark } 1914a587d139SMark // act like MatSetValues because not called on host 1915a587d139SMark if (A->assembled) { 1916a587d139SMark if (A->was_assembled) { 1917a587d139SMark ierr = PetscInfo(A,"Assemble more than once already\n");CHKERRQ(ierr); 1918a587d139SMark } 1919a587d139SMark A->was_assembled = PETSC_TRUE; // this is done (lazy) in MatAssemble but we are not calling it anymore - done in AIJ AssemblyEnd, need here? 1920a587d139SMark } else { 1921c0aa6a63SJacob Faibussowitsch ierr = PetscInfo1(A,"Warning !assemble ??? assembled=%" PetscInt_FMT "\n",A->assembled);CHKERRQ(ierr); 1922a587d139SMark // SETERRQ(comm,PETSC_ERR_SUP,"Need assemble matrix"); 1923a587d139SMark } 1924a587d139SMark if (!d_mat) { 1925042217e8SBarry Smith struct _n_SplitCSRMat h_mat; /* host container */ 1926a587d139SMark Mat_SeqAIJKokkos *aijkokA; 1927a587d139SMark Mat_SeqAIJ *jaca; 1928a587d139SMark PetscInt n = A->rmap->n, nnz; 1929a587d139SMark Mat Amat; 1930042217e8SBarry Smith PetscInt *colmap; 1931042217e8SBarry Smith 1932042217e8SBarry Smith /* create and copy h_mat */ 193349b994a9SMark Adams h_mat.M = A->cmap->N; // use for debug build 1934a587d139SMark ierr = PetscInfo(A,"Create device matrix in Kokkos\n");CHKERRQ(ierr); 1935a587d139SMark if (size == 1) { 1936a587d139SMark Amat = A; 1937a587d139SMark jaca = (Mat_SeqAIJ*)A->data; 1938a587d139SMark h_mat.rstart = 0; h_mat.rend = A->rmap->n; 1939a587d139SMark h_mat.cstart = 0; h_mat.cend = A->cmap->n; 1940a587d139SMark h_mat.offdiag.i = h_mat.offdiag.j = NULL; 1941a587d139SMark h_mat.offdiag.a = NULL; 1942a587d139SMark aijkokA = static_cast<Mat_SeqAIJKokkos*>(A->spptr); 1943a587d139SMark aijkokA->i_uncompressed_d = NULL; 1944a587d139SMark aijkokA->colmap_d = NULL; 1945a587d139SMark } else { 1946a587d139SMark Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 1947a587d139SMark Mat_SeqAIJ *jacb = (Mat_SeqAIJ*)aij->B->data; 1948a587d139SMark PetscInt ii; 1949a587d139SMark Mat_SeqAIJKokkos *aijkokB; 1950042217e8SBarry Smith 1951a587d139SMark Amat = aij->A; 1952a587d139SMark aijkokA = static_cast<Mat_SeqAIJKokkos*>(aij->A->spptr); 1953a587d139SMark aijkokB = static_cast<Mat_SeqAIJKokkos*>(aij->B->spptr); 1954a587d139SMark aijkokA->i_uncompressed_d = NULL; 1955a587d139SMark aijkokA->colmap_d = NULL; 1956a587d139SMark jaca = (Mat_SeqAIJ*)aij->A->data; 1957b3c64f9dSJunchao Zhang if (aij->B->cmap->n && !aij->garray) SETERRQ(comm,PETSC_ERR_PLIB,"MPIAIJ Matrix was assembled but is missing garray"); 1958a587d139SMark if (aij->B->rmap->n != aij->A->rmap->n) SETERRQ(comm,PETSC_ERR_SUP,"Only support aij->B->rmap->n == aij->A->rmap->n"); 1959a587d139SMark aij->donotstash = PETSC_TRUE; 1960a587d139SMark aij->A->nooffprocentries = aij->B->nooffprocentries = A->nooffprocentries = PETSC_TRUE; 1961a5b23f4aSJose E. Roman jaca->nonew = jacb->nonew = PETSC_TRUE; // no more disassembly 1962042217e8SBarry Smith ierr = PetscCalloc1(A->cmap->N,&colmap);CHKERRQ(ierr); 1963042217e8SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,(A->cmap->N)*sizeof(PetscInt));CHKERRQ(ierr); 1964042217e8SBarry Smith for (ii=0; ii<aij->B->cmap->n; ii++) colmap[aij->garray[ii]] = ii+1; 1965a587d139SMark // allocate B copy data 1966a587d139SMark h_mat.rstart = A->rmap->rstart; h_mat.rend = A->rmap->rend; 1967a587d139SMark h_mat.cstart = A->cmap->rstart; h_mat.cend = A->cmap->rend; 1968a587d139SMark nnz = jacb->i[n]; 1969a587d139SMark if (jacb->compressedrow.use) { 1970a587d139SMark const Kokkos::View<PetscInt*, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_i_k (jacb->i,n+1); 19719d676ae4SMark Adams aijkokB->i_uncompressed_d = new Kokkos::View<PetscInt*>(Kokkos::create_mirror(DefaultMemorySpace(),h_i_k)); 1972a587d139SMark Kokkos::deep_copy (*aijkokB->i_uncompressed_d, h_i_k); 1973a587d139SMark h_mat.offdiag.i = aijkokB->i_uncompressed_d->data(); 1974a587d139SMark } else { 197599551766SMark Adams h_mat.offdiag.i = aijkokB->i_device_data(); 1976a587d139SMark } 197799551766SMark Adams h_mat.offdiag.j = aijkokB->j_device_data(); 1978076ba34aSJunchao Zhang h_mat.offdiag.a = aijkokB->a_device_data(); 1979a587d139SMark { 1980042217e8SBarry Smith Kokkos::View<PetscInt*, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_colmap_k (colmap,A->cmap->N); 19819d676ae4SMark Adams aijkokB->colmap_d = new Kokkos::View<PetscInt*>(Kokkos::create_mirror(DefaultMemorySpace(),h_colmap_k)); 1982a587d139SMark Kokkos::deep_copy (*aijkokB->colmap_d, h_colmap_k); 1983a587d139SMark h_mat.colmap = aijkokB->colmap_d->data(); 1984042217e8SBarry Smith ierr = PetscFree(colmap);CHKERRQ(ierr); 1985a587d139SMark } 1986a587d139SMark h_mat.offdiag.ignorezeroentries = jacb->ignorezeroentries; 1987a587d139SMark h_mat.offdiag.n = n; 1988a587d139SMark } 1989a587d139SMark // allocate A copy data 1990a587d139SMark nnz = jaca->i[n]; 1991a587d139SMark h_mat.diag.n = n; 1992a587d139SMark h_mat.diag.ignorezeroentries = jaca->ignorezeroentries; 199355b25c41SPierre Jolivet ierr = MPI_Comm_rank(comm,&h_mat.rank);CHKERRMPI(ierr); 1994042217e8SBarry Smith if (jaca->compressedrow.use) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"A does not suppport compressed row (todo)"); 1995042217e8SBarry Smith else { 199699551766SMark Adams h_mat.diag.i = aijkokA->i_device_data(); 1997a587d139SMark } 199899551766SMark Adams h_mat.diag.j = aijkokA->j_device_data(); 1999076ba34aSJunchao Zhang h_mat.diag.a = aijkokA->a_device_data(); 2000a587d139SMark // copy pointers and metdata to device 2001a587d139SMark ierr = MatSeqAIJKokkosSetDeviceMat(Amat,&h_mat);CHKERRQ(ierr); 2002a587d139SMark ierr = MatSeqAIJKokkosGetDeviceMat(Amat,&d_mat);CHKERRQ(ierr); 2003c0aa6a63SJacob Faibussowitsch ierr = PetscInfo2(A,"Create device Mat n=%" PetscInt_FMT " nnz=%" PetscInt_FMT "\n",h_mat.diag.n, nnz);CHKERRQ(ierr); 2004a587d139SMark } 2005a587d139SMark *B = d_mat; // return it, set it in Mat, and set it up 2006a587d139SMark A->assembled = PETSC_FALSE; // ready to write with matsetvalues - this done (lazy) in normal MatSetValues 2007a587d139SMark PetscFunctionReturn(0); 2008a587d139SMark } 2009076ba34aSJunchao Zhang 2010076ba34aSJunchao Zhang PETSC_INTERN PetscErrorCode MatSeqAIJKokkosGetOffloadMask(Mat A, const char **mask) 2011076ba34aSJunchao Zhang { 2012076ba34aSJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos*>(A->spptr); 2013076ba34aSJunchao Zhang 2014076ba34aSJunchao Zhang PetscFunctionBegin; 2015076ba34aSJunchao Zhang if (!aijkok) *mask = "AIJKOK_UNALLOCATED"; 2016076ba34aSJunchao Zhang else if (aijkok->a_dual.need_sync_host()) *mask = "PETSC_OFFLOAD_GPU"; 2017076ba34aSJunchao Zhang else if (aijkok->a_dual.need_sync_device()) *mask = "PETSC_OFFLOAD_CPU"; 2018076ba34aSJunchao Zhang else *mask = "PETSC_OFFLOAD_BOTH"; 2019076ba34aSJunchao Zhang PetscFunctionReturn(0); 2020076ba34aSJunchao Zhang } 2021076ba34aSJunchao Zhang 2022076ba34aSJunchao Zhang PETSC_INTERN PetscErrorCode MatAIJKokkosPrintOffloadMask(Mat A) 2023076ba34aSJunchao Zhang { 2024076ba34aSJunchao Zhang PetscErrorCode ierr; 2025076ba34aSJunchao Zhang PetscMPIInt size; 2026076ba34aSJunchao Zhang Mat Ad,Ao; 2027076ba34aSJunchao Zhang const char *amask,*bmask; 2028076ba34aSJunchao Zhang 2029076ba34aSJunchao Zhang PetscFunctionBegin; 2030076ba34aSJunchao Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr); 2031076ba34aSJunchao Zhang 2032076ba34aSJunchao Zhang if (size == 1) { 2033076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetOffloadMask(A,&amask);CHKERRQ(ierr); 2034076ba34aSJunchao Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"%s\n",amask);CHKERRQ(ierr); 2035076ba34aSJunchao Zhang } else { 2036076ba34aSJunchao Zhang Ad = ((Mat_MPIAIJ*)A->data)->A; 2037076ba34aSJunchao Zhang Ao = ((Mat_MPIAIJ*)A->data)->B; 2038076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetOffloadMask(Ad,&amask);CHKERRQ(ierr); 2039076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetOffloadMask(Ao,&bmask);CHKERRQ(ierr); 2040076ba34aSJunchao Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"Diag : Off-diag = %s : %s\n",amask,bmask);CHKERRQ(ierr); 2041076ba34aSJunchao Zhang } 2042076ba34aSJunchao Zhang PetscFunctionReturn(0); 2043076ba34aSJunchao Zhang } 2044