111d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 2f0e6e2d1SJunchao Zhang #include <petscpkg_version.h> 3076ba34aSJunchao Zhang #include <petscsf.h> 442550becSJunchao Zhang #include <petsc/private/sfimpl.h> 58c3ff71bSJunchao Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 642550becSJunchao Zhang #include <../src/mat/impls/aij/mpi/kokkos/mpiaijkok.hpp> 7076ba34aSJunchao Zhang #include <KokkosSparse_spadd.hpp> 80e3ece09SJunchao Zhang #include <KokkosSparse_spgemm.hpp> 911d22bbfSJunchao Zhang 10d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJKokkos(Mat A, MatAssemblyType mode) 11d71ae5a4SJacob Faibussowitsch { 1230203840SJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)A->data; 138c3ff71bSJunchao Zhang 148c3ff71bSJunchao Zhang PetscFunctionBegin; 159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd_MPIAIJ(A, mode)); 1630203840SJunchao Zhang /* E.g., MatCreateSubMatrix() calls MatCreateMPIAIJWithSeqAIJ(comm,A,B,..), which creates Bnew of SEQAIJ and destroys B of SEQAIJKOKKOS. 1730203840SJunchao Zhang Thus we finalize A/B/lvec's type in MatAssemblyEnd() to handle various cases. 1830203840SJunchao Zhang */ 1930203840SJunchao Zhang if (mode == MAT_FINAL_ASSEMBLY) { 2030203840SJunchao Zhang PetscCall(MatSetType(mpiaij->A, MATSEQAIJKOKKOS)); 2130203840SJunchao Zhang PetscCall(MatSetType(mpiaij->B, MATSEQAIJKOKKOS)); 2230203840SJunchao Zhang PetscCall(VecSetType(mpiaij->lvec, VECSEQKOKKOS)); 2330203840SJunchao Zhang } 24a587d139SMark 253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 268c3ff71bSJunchao Zhang } 278c3ff71bSJunchao Zhang 28d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJKokkos(Mat mat, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 29d71ae5a4SJacob Faibussowitsch { 308c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 318c3ff71bSJunchao Zhang 328c3ff71bSJunchao Zhang PetscFunctionBegin; 339566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 356a29ce69SStefano Zampini #if defined(PETSC_USE_DEBUG) 368c3ff71bSJunchao Zhang if (d_nnz) { 376a29ce69SStefano Zampini PetscInt i; 38ad540459SPierre Jolivet for (i = 0; i < mat->rmap->n; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 398c3ff71bSJunchao Zhang } 408c3ff71bSJunchao Zhang if (o_nnz) { 416a29ce69SStefano Zampini PetscInt i; 42ad540459SPierre Jolivet for (i = 0; i < mat->rmap->n; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 438c3ff71bSJunchao Zhang } 446a29ce69SStefano Zampini #endif 456a29ce69SStefano Zampini #if defined(PETSC_USE_CTABLE) 46eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 476a29ce69SStefano Zampini #else 489566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 496a29ce69SStefano Zampini #endif 509566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 529566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 536a29ce69SStefano Zampini /* Because the B will have been resized we simply destroy it and create a new one each time */ 549566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mpiaij->B)); 556a29ce69SStefano Zampini 566a29ce69SStefano Zampini if (!mpiaij->A) { 579566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &mpiaij->A)); 589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mpiaij->A, mat->rmap->n, mat->cmap->n, mat->rmap->n, mat->cmap->n)); 596a29ce69SStefano Zampini } 606a29ce69SStefano Zampini if (!mpiaij->B) { 616a29ce69SStefano Zampini PetscMPIInt size; 629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size)); 639566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &mpiaij->B)); 649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mpiaij->B, mat->rmap->n, size > 1 ? mat->cmap->N : 0, mat->rmap->n, size > 1 ? mat->cmap->N : 0)); 658c3ff71bSJunchao Zhang } 669566063dSJacob Faibussowitsch PetscCall(MatSetType(mpiaij->A, MATSEQAIJKOKKOS)); 679566063dSJacob Faibussowitsch PetscCall(MatSetType(mpiaij->B, MATSEQAIJKOKKOS)); 689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(mpiaij->A, d_nz, d_nnz)); 699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(mpiaij->B, o_nz, o_nnz)); 708c3ff71bSJunchao Zhang mat->preallocated = PETSC_TRUE; 713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 728c3ff71bSJunchao Zhang } 738c3ff71bSJunchao Zhang 74d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPIAIJKokkos(Mat mat, Vec xx, Vec yy) 75d71ae5a4SJacob Faibussowitsch { 768c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 778c3ff71bSJunchao Zhang PetscInt nt; 788c3ff71bSJunchao Zhang 798c3ff71bSJunchao Zhang PetscFunctionBegin; 809566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 8108401ef6SPierre Jolivet PetscCheck(nt == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->cmap->n, nt); 829566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 839566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->mult)(mpiaij->A, xx, yy)); 849566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 859566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multadd)(mpiaij->B, mpiaij->lvec, yy, yy)); 863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 878c3ff71bSJunchao Zhang } 888c3ff71bSJunchao Zhang 89d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPIAIJKokkos(Mat mat, Vec xx, Vec yy, Vec zz) 90d71ae5a4SJacob Faibussowitsch { 918c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 928c3ff71bSJunchao Zhang PetscInt nt; 938c3ff71bSJunchao Zhang 948c3ff71bSJunchao Zhang PetscFunctionBegin; 959566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 9608401ef6SPierre Jolivet PetscCheck(nt == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->cmap->n, nt); 979566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 989566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->multadd)(mpiaij->A, xx, yy, zz)); 999566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1009566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multadd)(mpiaij->B, mpiaij->lvec, zz, zz)); 1013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1028c3ff71bSJunchao Zhang } 1038c3ff71bSJunchao Zhang 104d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_MPIAIJKokkos(Mat mat, Vec xx, Vec yy) 105d71ae5a4SJacob Faibussowitsch { 1068c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 1078c3ff71bSJunchao Zhang PetscInt nt; 1088c3ff71bSJunchao Zhang 1098c3ff71bSJunchao Zhang PetscFunctionBegin; 1109566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 11108401ef6SPierre Jolivet PetscCheck(nt == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->rmap->n, nt); 1129566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multtranspose)(mpiaij->B, xx, mpiaij->lvec)); 1139566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->multtranspose)(mpiaij->A, xx, yy)); 1149566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, mpiaij->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 1159566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, mpiaij->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1178c3ff71bSJunchao Zhang } 1188c3ff71bSJunchao Zhang 119076ba34aSJunchao Zhang /* Merge the "A, B" matrices of mat into a matrix C. mat's type is MPIAIJKOKKOS. C's type is MATSEQAIJKOKKOS. 120076ba34aSJunchao Zhang A is put before B. C's size would be A->rmap->n by (A->cmap->n + B->cmap->n). 121076ba34aSJunchao Zhang C still uses local column ids. Their corresponding global column ids are returned in glob. 122076ba34aSJunchao Zhang */ 123d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge_MPIAIJKokkos(Mat mat, MatReuse reuse, IS *glob, Mat *C) 124d71ae5a4SJacob Faibussowitsch { 125076ba34aSJunchao Zhang Mat Ad, Ao; 126076ba34aSJunchao Zhang const PetscInt *cmap; 127076ba34aSJunchao Zhang 128076ba34aSJunchao Zhang PetscFunctionBegin; 1299566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(mat, &Ad, &Ao, &cmap)); 1309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosMergeMats(Ad, Ao, reuse, C)); 131076ba34aSJunchao Zhang if (glob) { 132076ba34aSJunchao Zhang PetscInt cst, i, dn, on, *gidx; 1339566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, NULL, &dn)); 1349566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 1359566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cst, NULL)); 1369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 137076ba34aSJunchao Zhang for (i = 0; i < dn; i++) gidx[i] = cst + i; 138076ba34aSJunchao Zhang for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 1399566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 140076ba34aSJunchao Zhang } 1413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 142076ba34aSJunchao Zhang } 143076ba34aSJunchao Zhang 1440e3ece09SJunchao Zhang /* Structs used in matrix products of type C=AB, C=A^tB and C=B^tAB */ 145076ba34aSJunchao Zhang struct MatMatStruct { 1460e3ece09SJunchao Zhang PetscInt n, *garray; // C's garray and its size. 1470e3ece09SJunchao Zhang KokkosCsrMatrix Cd, Co; // C is in split form matrices (all in local column indcies) 1480e3ece09SJunchao Zhang KokkosCsrMatrix C1, C2, C3, C4; // intermediate mat products 1490e3ece09SJunchao Zhang KokkosCsrMatrix C2_mid, C4_mid; // alias of C2, C4; share their a[], i[], but with different j[] (hence column size) 1500e3ece09SJunchao Zhang PetscIntKokkosView E_NzLeft; 1510e3ece09SJunchao Zhang PetscSF sf = nullptr; // SF to bcast or reduce matrices E to F 1520e3ece09SJunchao Zhang MatScalarKokkosView rootBuf, leafBuf; 1530e3ece09SJunchao Zhang KokkosCsrMatrix Fd, Fo; // F in split form 1540e3ece09SJunchao Zhang 1550e3ece09SJunchao Zhang KernelHandle kh1; // compute C1, add C1+C3 or C1+Fd 1560e3ece09SJunchao Zhang KernelHandle kh2; // compute C2, add C2+C4 or C2+Fo 1570e3ece09SJunchao Zhang KernelHandle kh3; // compute C3 1580e3ece09SJunchao Zhang KernelHandle kh4; // compute C4 1590e3ece09SJunchao Zhang 160aaa8cc7dSPierre Jolivet PetscInt E_TeamSize; // kernel launching parameters in merging E or splitting F 1610e3ece09SJunchao Zhang PetscInt E_VectorLength; 1620e3ece09SJunchao Zhang PetscInt E_RowsPerTeam; 1630e3ece09SJunchao Zhang PetscInt F_TeamSize; 1640e3ece09SJunchao Zhang PetscInt F_VectorLength; 1650e3ece09SJunchao Zhang PetscInt F_RowsPerTeam; 166076ba34aSJunchao Zhang 167d71ae5a4SJacob Faibussowitsch ~MatMatStruct() 168d71ae5a4SJacob Faibussowitsch { 1693ba16761SJacob Faibussowitsch PetscFunctionBegin; 1703ba16761SJacob Faibussowitsch PetscCallAbort(PETSC_COMM_SELF, PetscSFDestroy(&sf)); 1713ba16761SJacob Faibussowitsch PetscFunctionReturnVoid(); 172076ba34aSJunchao Zhang } 173076ba34aSJunchao Zhang }; 174076ba34aSJunchao Zhang 175076ba34aSJunchao Zhang struct MatMatStruct_AB : public MatMatStruct { 1760e3ece09SJunchao Zhang PetscIntKokkosView F_NzLeft; // plans to split F (in leafbuf) into Fd, Fo 1770e3ece09SJunchao Zhang PetscIntKokkosView irootloc; // plans to put E (i.e., Bd, Bo) into rootBuf 1780e3ece09SJunchao Zhang PetscIntKokkosView rowoffset; 179076ba34aSJunchao Zhang }; 180076ba34aSJunchao Zhang 181076ba34aSJunchao Zhang struct MatMatStruct_AtB : public MatMatStruct { 1820e3ece09SJunchao Zhang MatColIdxKokkosView Fdjmap; // plans to reduce data in rootBuf to Fd, Fo 1830e3ece09SJunchao Zhang MatColIdxKokkosView Fdjperm; 1840e3ece09SJunchao Zhang MatColIdxKokkosView Fojmap; 1850e3ece09SJunchao Zhang MatColIdxKokkosView Fojperm; 186076ba34aSJunchao Zhang }; 187076ba34aSJunchao Zhang 1889371c9d4SSatish Balay struct MatProductData_MPIAIJKokkos { 1893ba16761SJacob Faibussowitsch MatMatStruct_AB *mmAB = nullptr; 1903ba16761SJacob Faibussowitsch MatMatStruct_AtB *mmAtB = nullptr; 1913ba16761SJacob Faibussowitsch PetscBool reusesym = PETSC_FALSE; 1920e3ece09SJunchao Zhang Mat Z = nullptr; // store Z=AB in computing BtAB 193076ba34aSJunchao Zhang 194d71ae5a4SJacob Faibussowitsch ~MatProductData_MPIAIJKokkos() 195d71ae5a4SJacob Faibussowitsch { 196076ba34aSJunchao Zhang delete mmAB; 197076ba34aSJunchao Zhang delete mmAtB; 1980e3ece09SJunchao Zhang PetscCallAbort(PETSC_COMM_SELF, MatDestroy(&Z)); 199076ba34aSJunchao Zhang } 200076ba34aSJunchao Zhang }; 201076ba34aSJunchao Zhang 202d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductDataDestroy_MPIAIJKokkos(void *data) 203d71ae5a4SJacob Faibussowitsch { 204076ba34aSJunchao Zhang PetscFunctionBegin; 2059566063dSJacob Faibussowitsch PetscCallCXX(delete static_cast<MatProductData_MPIAIJKokkos *>(data)); 2063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207076ba34aSJunchao Zhang } 208076ba34aSJunchao Zhang 209076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices - Set the diag and offdiag matrices of a MATMPIAIJKOKKOS matrix. 210076ba34aSJunchao Zhang It is similar to MatCreateMPIAIJWithSplitArrays. 211076ba34aSJunchao Zhang 212076ba34aSJunchao Zhang Input Parameters: 213076ba34aSJunchao Zhang + mat - the MATMPIAIJKOKKOS matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set 214076ba34aSJunchao Zhang . A - the diag matrix using local col ids 215076ba34aSJunchao Zhang - B - the offdiag matrix using global col ids 216076ba34aSJunchao Zhang 2172fe279fdSBarry Smith Output Parameter: 218076ba34aSJunchao Zhang . mat - the updated MATMPIAIJKOKKOS matrix 219076ba34aSJunchao Zhang */ 2200e3ece09SJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Mat mat, Mat A, Mat B, PetscInt *garray) 221d71ae5a4SJacob Faibussowitsch { 222076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 223076ba34aSJunchao Zhang PetscInt m, n, M, N, Am, An, Bm, Bn; 224076ba34aSJunchao Zhang 225076ba34aSJunchao Zhang PetscFunctionBegin; 2269566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 2279566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 2289566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &Am, &An)); 2299566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &Bm, &Bn)); 230076ba34aSJunchao Zhang 231aed4548fSBarry Smith PetscCheck(m == Am && m == Bm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of rows do not match"); 23208401ef6SPierre Jolivet PetscCheck(n == An, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of columns do not match"); 2330e3ece09SJunchao Zhang // PetscCheck(N == Bn, PETSC_COMM_SELF, PETSC_ERR_PLIB, "global number of columns do not match"); 23408401ef6SPierre Jolivet PetscCheck(!mpiaij->A && !mpiaij->B, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A, B of the MPIAIJ matrix are not empty"); 235076ba34aSJunchao Zhang mpiaij->A = A; 236076ba34aSJunchao Zhang mpiaij->B = B; 2370e3ece09SJunchao Zhang mpiaij->garray = garray; 238076ba34aSJunchao Zhang 239076ba34aSJunchao Zhang mat->preallocated = PETSC_TRUE; 240076ba34aSJunchao Zhang mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 241076ba34aSJunchao Zhang 2429566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 2439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 244076ba34aSJunchao Zhang /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 245076ba34aSJunchao Zhang also gets mpiaij->B compacted, with its col ids and size reduced 246076ba34aSJunchao Zhang */ 2479566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 2489566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 2499566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 251076ba34aSJunchao Zhang } 252076ba34aSJunchao Zhang 2530e3ece09SJunchao Zhang // Adapted from Kokkos-Kernels spmv_launch_parameters(), to get parameters in Kokkos nested loops which we used to merge or 2540e3ece09SJunchao Zhang // split csr matrices. The rule is to have "vector_length * team_size" be around 256 on GPUs (e.g., for a CUDA thread block) 2550e3ece09SJunchao Zhang template <class ExecutionSpace> 2560e3ece09SJunchao Zhang static PetscErrorCode MatMergeGetLaunchParameters(PetscInt numRows, PetscInt nnz, PetscInt rows_per_thread, PetscInt &team_size, PetscInt &vector_length, PetscInt &rows_per_team) 257d71ae5a4SJacob Faibussowitsch { 2580e3ece09SJunchao Zhang Kokkos::TeamPolicy<ExecutionSpace> teamPolicy(128, Kokkos::AUTO); 259076ba34aSJunchao Zhang 260076ba34aSJunchao Zhang PetscFunctionBegin; 2610e3ece09SJunchao Zhang PetscInt nnz_per_row = numRows ? (nnz / numRows) : 0; // we might meet empty matrices 262076ba34aSJunchao Zhang 2630e3ece09SJunchao Zhang if (nnz_per_row < 1) nnz_per_row = 1; 264076ba34aSJunchao Zhang 2650e3ece09SJunchao Zhang int max_vector_length = teamPolicy.vector_length_max(); 266076ba34aSJunchao Zhang 2670e3ece09SJunchao Zhang if (vector_length < 1) { 2680e3ece09SJunchao Zhang vector_length = 1; 2690e3ece09SJunchao Zhang while (vector_length < max_vector_length && vector_length * 6 < nnz_per_row) vector_length *= 2; 270076ba34aSJunchao Zhang } 271076ba34aSJunchao Zhang 2720e3ece09SJunchao Zhang // Determine rows per thread 2730e3ece09SJunchao Zhang if (rows_per_thread < 1) { 2740e3ece09SJunchao Zhang if (KokkosKernels::Impl::kk_is_gpu_exec_space<ExecutionSpace>()) rows_per_thread = 1; 2750e3ece09SJunchao Zhang else { 2760e3ece09SJunchao Zhang if (nnz_per_row < 20 && nnz > 5000000) { 2770e3ece09SJunchao Zhang rows_per_thread = 256; 2780e3ece09SJunchao Zhang } else rows_per_thread = 64; 279076ba34aSJunchao Zhang } 280076ba34aSJunchao Zhang } 281076ba34aSJunchao Zhang 2820e3ece09SJunchao Zhang if (team_size < 1) { 2830e3ece09SJunchao Zhang if (KokkosKernels::Impl::kk_is_gpu_exec_space<ExecutionSpace>()) { 2840e3ece09SJunchao Zhang team_size = 256 / vector_length; 285076ba34aSJunchao Zhang } else { 2860e3ece09SJunchao Zhang team_size = 1; 2870e3ece09SJunchao Zhang } 288076ba34aSJunchao Zhang } 289076ba34aSJunchao Zhang 2900e3ece09SJunchao Zhang rows_per_team = rows_per_thread * team_size; 291076ba34aSJunchao Zhang 2920e3ece09SJunchao Zhang if (rows_per_team < 0) { 2930e3ece09SJunchao Zhang PetscInt nnz_per_team = 4096; 2940e3ece09SJunchao Zhang PetscInt conc = ExecutionSpace().concurrency(); 2950e3ece09SJunchao Zhang while ((conc * nnz_per_team * 4 > nnz) && (nnz_per_team > 256)) nnz_per_team /= 2; 2960e3ece09SJunchao Zhang rows_per_team = (nnz_per_team + nnz_per_row - 1) / nnz_per_row; 2970e3ece09SJunchao Zhang } 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299076ba34aSJunchao Zhang } 300076ba34aSJunchao Zhang 3010e3ece09SJunchao Zhang /* 3020e3ece09SJunchao Zhang Reduce two sets of global indices into local ones 303076ba34aSJunchao Zhang 304076ba34aSJunchao Zhang Input Parameters: 3050e3ece09SJunchao Zhang + n1 - size of garray1[], the first set 3060e3ece09SJunchao Zhang . garray1[n1] - a sorted global index array (without duplicates) 3070e3ece09SJunchao Zhang . m - size of indices[], the second set 3080e3ece09SJunchao Zhang - indices[m] - a unsorted global index array (might have duplicates), which will be updated on output into local ones 309076ba34aSJunchao Zhang 310076ba34aSJunchao Zhang Output Parameters: 3110e3ece09SJunchao Zhang + n2 - size of garray2[], the merged set, which combines garray1[] and indices[] 3120e3ece09SJunchao Zhang . garray2[n2] - allocated by callee using PetscMalloc1(). Contains sorted unique global indices (without duplicates). Caller needs to free it. 3130e3ece09SJunchao Zhang . map[n1] - allocated by caller. It gives garray1[i] = garray2[map[i]] 3140e3ece09SJunchao Zhang - indices[m] - on output, global indices in this array are rewritten with local ones, i.e, indices_input[i] = garray2[indices_output[i]] 315076ba34aSJunchao Zhang 3160e3ece09SJunchao Zhang Example, say 3170e3ece09SJunchao Zhang n1 = 5 3180e3ece09SJunchao Zhang garray1[5] = {1, 4, 7, 8, 10} 3190e3ece09SJunchao Zhang m = 4 3200e3ece09SJunchao Zhang indices[4] = {2, 4, 8, 9} 32111a5261eSBarry Smith 3220e3ece09SJunchao Zhang Combining them together, we have 7 global indices in garray2[] 3230e3ece09SJunchao Zhang n2 = 7 3240e3ece09SJunchao Zhang garray2[7] = {1, 2, 4, 7, 8, 9, 10} 3250e3ece09SJunchao Zhang 3260e3ece09SJunchao Zhang And we have map[] to connect "garray1[i] = garray2[map[i]], i=[0,n1)" 3270e3ece09SJunchao Zhang map[5] = {0, 2, 3, 4, 6} 3280e3ece09SJunchao Zhang 3290e3ece09SJunchao Zhang On output, indices[] is updated with local indices 3300e3ece09SJunchao Zhang indices[4] = {1, 2, 4, 5} 331076ba34aSJunchao Zhang */ 3320e3ece09SJunchao Zhang static PetscErrorCode ReduceTwoSetsOfGlobalIndices(PetscInt n1, const PetscInt *garray1, PetscInt m, PetscInt *indices, PetscInt *n2_, PetscInt **garray2_, PetscInt *map) 333d71ae5a4SJacob Faibussowitsch { 3340e3ece09SJunchao Zhang PetscHMapI g2l = nullptr; 3350e3ece09SJunchao Zhang PetscHashIter iter; 3360e3ece09SJunchao Zhang PetscInt tot, key, val; // total unique global indices. key is global id; val is local id 3370e3ece09SJunchao Zhang PetscInt n2, *garray2; 338076ba34aSJunchao Zhang 339076ba34aSJunchao Zhang PetscFunctionBegin; 3400e3ece09SJunchao Zhang tot = 0; 3410e3ece09SJunchao Zhang PetscCall(PetscHMapICreateWithSize(n1, &g2l)); 3420e3ece09SJunchao Zhang for (PetscInt i = 0; i < m; i++) { // insert those in indices[] 3430e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, indices[i], -1, &val)); // if not exist, val is set with -1 3440e3ece09SJunchao Zhang if (val < 0) PetscCall(PetscHMapISet(g2l, indices[i], tot++)); // val < 0 means gid is not in the hash table yet 345076ba34aSJunchao Zhang } 346076ba34aSJunchao Zhang 3470e3ece09SJunchao Zhang for (PetscInt i = 0; i < n1; i++) { // insert those in garray1[] 3480e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, garray1[i], -1, &val)); 3490e3ece09SJunchao Zhang if (val < 0) PetscCall(PetscHMapISet(g2l, garray1[i], tot++)); 350076ba34aSJunchao Zhang } 351076ba34aSJunchao Zhang 3520e3ece09SJunchao Zhang // Pull out (unique) globals in the hash table and put them in garray2[] 3530e3ece09SJunchao Zhang n2 = tot; 3540e3ece09SJunchao Zhang PetscCall(PetscMalloc1(n2, &garray2)); 3550e3ece09SJunchao Zhang tot = 0; 3560e3ece09SJunchao Zhang PetscHashIterBegin(g2l, iter); 3570e3ece09SJunchao Zhang while (!PetscHashIterAtEnd(g2l, iter)) { 3580e3ece09SJunchao Zhang PetscHashIterGetKey(g2l, iter, key); 3590e3ece09SJunchao Zhang PetscHashIterNext(g2l, iter); 3600e3ece09SJunchao Zhang garray2[tot++] = key; 361076ba34aSJunchao Zhang } 362076ba34aSJunchao Zhang 3630e3ece09SJunchao Zhang // Sort garray2[] and then map them to local indices starting from 0 3640e3ece09SJunchao Zhang PetscCall(PetscSortInt(n2, garray2)); 3650e3ece09SJunchao Zhang PetscCall(PetscHMapIClear(g2l)); 3660e3ece09SJunchao Zhang for (PetscInt i = 0; i < tot; i++) PetscCall(PetscHMapISet(g2l, garray2[i], i)); // i is the local id 367f0e6e2d1SJunchao Zhang 3680e3ece09SJunchao Zhang // Rewrite indices[] with local indices 369f0e6e2d1SJunchao Zhang for (PetscInt i = 0; i < m; i++) { 3700e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, indices[i], -1, &val)); 3710e3ece09SJunchao Zhang PetscAssert(val >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Met a negative local column index"); 3720e3ece09SJunchao Zhang indices[i] = val; 3730e3ece09SJunchao Zhang } 3740e3ece09SJunchao Zhang // Record the map that maps garray1[i] to garray2[map[i]] 3750e3ece09SJunchao Zhang for (PetscInt i = 0; i < n1; i++) PetscCall(PetscHMapIGetWithDefault(g2l, garray1[i], -1, &map[i])); 3760e3ece09SJunchao Zhang PetscCall(PetscHMapIDestroy(&g2l)); 3770e3ece09SJunchao Zhang *n2_ = n2; 3780e3ece09SJunchao Zhang *garray2_ = garray2; 3790e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 3800e3ece09SJunchao Zhang } 381f0e6e2d1SJunchao Zhang 3820e3ece09SJunchao Zhang /* 3830e3ece09SJunchao Zhang MatMPIAIJKokkosReduce - Reduce rows of a MPIAIJKOKKOS matrix (E, in split form) to produce another matrix (F, also in split form, stored in mm) 3840e3ece09SJunchao Zhang 3850e3ece09SJunchao Zhang It is the reverse of MatMPIAIJKokkosBcast() in some sense, but with a different signature since we do not really need a fully populated MPIAIJKOKKOS E. 3860e3ece09SJunchao Zhang 3870e3ece09SJunchao Zhang Think each row of E as a leaf, then the given ownerSF specifies roots for the leaves. Roots may connect to multiple leaves. 3880e3ece09SJunchao Zhang In this routine, we sparse-merge leaves (rows) at their roots to form potentially longer rows in F. F's number of rows will be nroots of ownerSF. 3890e3ece09SJunchao Zhang 3900e3ece09SJunchao Zhang Input Parameters: 3910e3ece09SJunchao Zhang + comm - MPI communicator of E 3920e3ece09SJunchao Zhang . A - diag block of E, using local column indices 3930e3ece09SJunchao Zhang . B - off-diag block of E, using local column indices 3940e3ece09SJunchao Zhang . cstart - (global) start column of Ed 3950e3ece09SJunchao Zhang . cend - (global) end column + 1 of Ed. In other words, E's column ownership is in range of [cstart, cend) 3960e3ece09SJunchao Zhang . garray1[n1] - global column indices of Eo. Here n1 is Eo's column size. 3970e3ece09SJunchao Zhang . ownerSF - the SF specifies ownership (root) of rows in E 3980e3ece09SJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 3990e3ece09SJunchao Zhang - mm - to stash intermediate data structures for reuse 4000e3ece09SJunchao Zhang 4010e3ece09SJunchao Zhang Output Parameters: 4020e3ece09SJunchao Zhang + map[n1] - allocated by caller. It maps garray1[] to garray2[]. See more at ReduceTwoSetsOfGlobalIndices(). 4030e3ece09SJunchao Zhang - mm - contains various info, such as garray2[], F (Fd, Fo) etc. 4040e3ece09SJunchao Zhang 4050e3ece09SJunchao Zhang Notes: 4060e3ece09SJunchao Zhang When reuse = MAT_REUSE_MATRIX, cstart, cend, garray1, ownerSF, map are not significant. 4070e3ece09SJunchao Zhang 4080e3ece09SJunchao Zhang */ 4090e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosReduceBegin(MPI_Comm comm, KokkosCsrMatrix A, KokkosCsrMatrix B, PetscInt cstart, PetscInt cend, const PetscInt *garray1, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AtB *mm) 4100e3ece09SJunchao Zhang { 4110e3ece09SJunchao Zhang PetscFunctionBegin; 4120e3ece09SJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 4130e3ece09SJunchao Zhang PetscInt Em = A.numRows(), Fm; 4140e3ece09SJunchao Zhang PetscInt n1 = B.numCols(); 4150e3ece09SJunchao Zhang 4160e3ece09SJunchao Zhang PetscCall(PetscSFGetGraph(ownerSF, &Fm, NULL, NULL, NULL)); // Fm = #rows of F = nroots of ownerSF 4170e3ece09SJunchao Zhang 4180e3ece09SJunchao Zhang // Do the analysis on host 4190e3ece09SJunchao Zhang auto Ai_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), A.graph.row_map); 4200e3ece09SJunchao Zhang auto Aj_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), A.graph.entries); 4210e3ece09SJunchao Zhang auto Bi_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), B.graph.row_map); 4220e3ece09SJunchao Zhang auto Bj_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), B.graph.entries); 4230e3ece09SJunchao Zhang const MatRowMapType *Ai = Ai_h.data(), *Bi = Bi_h.data(); 4240e3ece09SJunchao Zhang const MatColIdxType *Aj = Aj_h.data(), *Bj = Bj_h.data(); 4250e3ece09SJunchao Zhang 4260e3ece09SJunchao Zhang // Count how many nonzeros of each row in E are in the left of the diag block [cstart,cend) 427*7b8d4ba6SJunchao Zhang PetscIntKokkosViewHost E_NzLeft_h(NoInit("E_NzLeft_h"), Em), E_RowLen_h(NoInit("E_RowLen_h"), Em); 4280e3ece09SJunchao Zhang PetscInt *E_NzLeft = E_NzLeft_h.data(), *E_RowLen = E_RowLen_h.data(); 4290e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) { 4300e3ece09SJunchao Zhang const PetscInt *first, *last, *it; 4310e3ece09SJunchao Zhang PetscInt count, step; 4320e3ece09SJunchao Zhang // std::lower_bound(first,last,cstart), but need to use global column indices 4330e3ece09SJunchao Zhang first = Bj + Bi[i]; 4340e3ece09SJunchao Zhang last = Bj + Bi[i + 1]; 435f0e6e2d1SJunchao Zhang count = last - first; 436f0e6e2d1SJunchao Zhang while (count > 0) { 437f0e6e2d1SJunchao Zhang it = first; 438f0e6e2d1SJunchao Zhang step = count / 2; 439f0e6e2d1SJunchao Zhang it += step; 4400e3ece09SJunchao Zhang if (garray1[*it] < cstart) { // map local to global 441f0e6e2d1SJunchao Zhang first = ++it; 442f0e6e2d1SJunchao Zhang count -= step + 1; 443f0e6e2d1SJunchao Zhang } else count = step; 444f0e6e2d1SJunchao Zhang } 4450e3ece09SJunchao Zhang E_NzLeft[i] = first - (Bj + Bi[i]); 4460e3ece09SJunchao Zhang E_RowLen[i] = (Ai[i + 1] - Ai[i]) + (Bi[i + 1] - Bi[i]); 447f0e6e2d1SJunchao Zhang } 448f0e6e2d1SJunchao Zhang 4490e3ece09SJunchao Zhang // Get length of rows (i.e., sizes of leaves) that contribute to my roots 4500e3ece09SJunchao Zhang const PetscMPIInt *iranks, *ranks; 4510e3ece09SJunchao Zhang const PetscInt *ioffset, *irootloc, *roffset, *rmine; 4520e3ece09SJunchao Zhang PetscInt niranks, nranks; 4530e3ece09SJunchao Zhang MPI_Request *reqs; 4540e3ece09SJunchao Zhang PetscMPIInt tag; 4550e3ece09SJunchao Zhang PetscSF reduceSF; 4560e3ece09SJunchao Zhang PetscInt *sdisp, *rdisp; 457f0e6e2d1SJunchao Zhang 4580e3ece09SJunchao Zhang PetscCall(PetscCommGetNewTag(comm, &tag)); 4590e3ece09SJunchao Zhang PetscCall(PetscSFGetLeafRanks(ownerSF, &niranks, &iranks, &ioffset, &irootloc)); // get leaf ranks connecting to roots on this process (I'll recv from them) 4600e3ece09SJunchao Zhang PetscCall(PetscSFGetRootRanks(ownerSF, &nranks, &ranks, &roffset, &rmine, NULL)); // get root ranks this process connects (I'll send to them) 461f0e6e2d1SJunchao Zhang 4620e3ece09SJunchao Zhang // Find out length of each row I will receive. Even for the same row index, when they are from 4630e3ece09SJunchao Zhang // different senders, they might have different lengths (and sparsity patterns) 4640e3ece09SJunchao Zhang PetscInt sendRowCnt = roffset[nranks], recvRowCnt = ioffset[niranks]; 4650e3ece09SJunchao Zhang PetscInt *sendRowLen, *recvRowLen; // lengths of rows of I need to send/recv per process 466f0e6e2d1SJunchao Zhang 4670e3ece09SJunchao Zhang PetscCall(PetscMalloc5(sendRowCnt, &sendRowLen, recvRowCnt + 1, &recvRowLen, nranks, &sdisp, niranks + 1, &rdisp, nranks + niranks, &reqs)); 4680e3ece09SJunchao Zhang 4690e3ece09SJunchao Zhang for (PetscInt i = 0; i < sendRowCnt; i++) sendRowLen[i] = E_RowLen[rmine[i]]; 4700e3ece09SJunchao Zhang recvRowLen[0] = 0; // since we will make it in CSR format later 4710e3ece09SJunchao Zhang recvRowLen++; // advance the pointer now 4720e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { MPI_Irecv(&recvRowLen[ioffset[i]], ioffset[i + 1] - ioffset[i], MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i]); } 4730e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { MPI_Isend(&sendRowLen[roffset[i]], roffset[i + 1] - roffset[i], MPIU_INT, ranks[i], tag, comm, &reqs[i]); } 4740e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(nranks + niranks, reqs, MPI_STATUSES_IGNORE)); 4750e3ece09SJunchao Zhang 4760e3ece09SJunchao Zhang // Build the real PetscSF for reducing E rows (buffer to buffer) 4770e3ece09SJunchao Zhang rdisp[0] = 0; 4780e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { 4790e3ece09SJunchao Zhang rdisp[i + 1] = rdisp[i]; 4800e3ece09SJunchao Zhang for (PetscInt j = ioffset[i]; j < ioffset[i + 1]; j++) { rdisp[i + 1] += recvRowLen[j]; } 4810e3ece09SJunchao Zhang } 4820e3ece09SJunchao Zhang recvRowLen--; // put it back into csr format 4830e3ece09SJunchao Zhang for (PetscInt i = 0; i < recvRowCnt; i++) recvRowLen[i + 1] += recvRowLen[i]; 4840e3ece09SJunchao Zhang 4850e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { MPI_Irecv(&sdisp[i], 1, MPIU_INT, ranks[i], tag, comm, &reqs[i]); } 4860e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { MPI_Isend(&rdisp[i], 1, MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i]); } 4870e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(nranks + niranks, reqs, MPI_STATUSES_IGNORE)); 4880e3ece09SJunchao Zhang 4890e3ece09SJunchao Zhang PetscInt nleaves = 0, Enz = 0; // leaves are nonzeros I will send 4900e3ece09SJunchao Zhang PetscInt nroots = rdisp[niranks]; // roots are nonzeros I will recv 4910e3ece09SJunchao Zhang PetscSFNode *iremote; 4920e3ece09SJunchao Zhang 4930e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) Enz += E_RowLen[i]; 4940e3ece09SJunchao Zhang PetscAssert(A.nnz() + B.nnz() == Enz, comm, PETSC_ERR_PLIB, "Enz should be equal to sum of nnz of A and B"); 4950e3ece09SJunchao Zhang PetscCallMPI(PetscMalloc1(Enz, &iremote)); // no free, since we give ownership to reduceSF 4960e3ece09SJunchao Zhang 4970e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { 4980e3ece09SJunchao Zhang PetscInt count = 0; 4990e3ece09SJunchao Zhang for (PetscInt j = roffset[i]; j < roffset[i + 1]; j++) count += E_RowLen[rmine[j]]; 5000e3ece09SJunchao Zhang for (PetscInt j = 0; j < count; j++) { 5010e3ece09SJunchao Zhang iremote[nleaves + j].rank = ranks[i]; 5020e3ece09SJunchao Zhang iremote[nleaves + j].index = sdisp[i] + j; 5030e3ece09SJunchao Zhang } 5040e3ece09SJunchao Zhang nleaves += count; 5050e3ece09SJunchao Zhang } 5060e3ece09SJunchao Zhang PetscCheck(nleaves == Enz, comm, PETSC_ERR_PLIB, "nleaves should be equal to Enz"); 5070e3ece09SJunchao Zhang 5080e3ece09SJunchao Zhang PetscCall(PetscSFCreate(comm, &reduceSF)); 5090e3ece09SJunchao Zhang PetscCall(PetscSFSetGraph(reduceSF, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 5100e3ece09SJunchao Zhang 5110e3ece09SJunchao Zhang // Copy (global) column indices of the needed rows in E to sendCol[], and then PetscSFReduce to recvCol[] 5120e3ece09SJunchao Zhang PetscInt *sendCol, *recvCol; 5130e3ece09SJunchao Zhang PetscCall(PetscMalloc2(nleaves, &sendCol, nroots, &recvCol)); 5140e3ece09SJunchao Zhang for (PetscInt k = 0; k < roffset[nranks]; k++) { 5150e3ece09SJunchao Zhang PetscInt i = rmine[k]; // row to be copied 5160e3ece09SJunchao Zhang PetscInt *buf = &sendCol[Ai[i] + Bi[i]]; 5170e3ece09SJunchao Zhang PetscInt nzLeft = E_NzLeft[i]; 5180e3ece09SJunchao Zhang PetscInt alen = Ai[i + 1] - Ai[i], blen = Bi[i + 1] - Bi[i]; 5190e3ece09SJunchao Zhang for (PetscInt j = 0; j < alen + blen; j++) { 5200e3ece09SJunchao Zhang if (j < nzLeft) { 5210e3ece09SJunchao Zhang buf[j] = garray1[Bj[Bi[i] + j]]; // left B, in global 5220e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { 5230e3ece09SJunchao Zhang buf[j] = Aj[Ai[i] + j - nzLeft] + cstart; // diag A, also in global 5240e3ece09SJunchao Zhang } else { 5250e3ece09SJunchao Zhang buf[j] = garray1[Bj[Bi[i] + j - alen]]; // right B, in global 5260e3ece09SJunchao Zhang } 5270e3ece09SJunchao Zhang } 5280e3ece09SJunchao Zhang } 5290e3ece09SJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(reduceSF, MPIU_INT, PETSC_MEMTYPE_HOST, sendCol, PETSC_MEMTYPE_HOST, recvCol, MPI_REPLACE)); 5300e3ece09SJunchao Zhang PetscCall(PetscSFReduceEnd(reduceSF, MPIU_INT, sendCol, recvCol, MPI_REPLACE)); 5310e3ece09SJunchao Zhang 5320e3ece09SJunchao Zhang // With recvCol[], we do a series of analysis to get i, j of Fd, Fo, and build plans to reduce nonzeros in recv buffers to Fd and Fo 5330e3ece09SJunchao Zhang PetscInt *recvRowPerm, *recvColSorted; 5340e3ece09SJunchao Zhang PetscInt *recvNzPerm, *recvNzPermSorted; 5350e3ece09SJunchao Zhang PetscCall(PetscMalloc4(recvRowCnt, &recvRowPerm, nroots, &recvColSorted, nroots, &recvNzPerm, nroots, &recvNzPermSorted)); 5360e3ece09SJunchao Zhang 5370e3ece09SJunchao Zhang for (PetscInt i = 0; i < nroots; i++) recvNzPerm[i] = i; // numbering all received nonzeros 5380e3ece09SJunchao Zhang for (PetscInt i = 0; i < recvRowCnt; i++) recvRowPerm[i] = i; // put up a permutation array, so that after sorting we know where to get a row in recvCol[] 5390e3ece09SJunchao Zhang PetscCall(PetscSortIntWithPermutation(recvRowCnt, irootloc, recvRowPerm)); // irootloc[] (owned by ownerSF) won't be changed 5400e3ece09SJunchao Zhang 5410e3ece09SJunchao Zhang // i[] array, nz are always easiest to compute 542*7b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdi_h(NoInit("Fdi_h"), Fm + 1), Foi_h(NoInit("Foi_h"), Fm + 1); 5430e3ece09SJunchao Zhang MatRowMapType *Fdi, *Foi; 5440e3ece09SJunchao Zhang PetscInt FnzDups = 0, Fdnz = 0, FdnzDups = 0, Fonz = 0, FonzDups = 0; // nz (with or without dups) in F, Fd, Fo 5450e3ece09SJunchao Zhang PetscInt iter; 5460e3ece09SJunchao Zhang 5470e3ece09SJunchao Zhang Kokkos::deep_copy(Fdi_h, 0); // zero, as we will do 'val++' on them 5480e3ece09SJunchao Zhang Kokkos::deep_copy(Foi_h, 0); 5490e3ece09SJunchao Zhang Fdi = Fdi_h.data() + 1; // +1 for easy indexing in code below 5500e3ece09SJunchao Zhang Foi = Foi_h.data() + 1; 5510e3ece09SJunchao Zhang iter = 0; 5520e3ece09SJunchao Zhang while (iter < recvRowCnt) { // iter over received rows 5530e3ece09SJunchao Zhang PetscInt curRowIdx = irootloc[recvRowPerm[iter]]; 5540e3ece09SJunchao Zhang PetscInt dupRows = 1; // current row has this many contributing rows (of various sparsity patterns) 5550e3ece09SJunchao Zhang 5560e3ece09SJunchao Zhang while (iter + dupRows < recvRowCnt && irootloc[recvRowPerm[iter + dupRows]] == curRowIdx) dupRows++; 5570e3ece09SJunchao Zhang 5580e3ece09SJunchao Zhang // Copy column indices (and their permutation) of these rows into recvColSorted & recvNzPermSorted 5590e3ece09SJunchao Zhang PetscInt nz = 0; // nz (with dups) in the current row 5600e3ece09SJunchao Zhang PetscInt *jbuf = recvColSorted + FnzDups; 5610e3ece09SJunchao Zhang PetscInt *pbuf = recvNzPermSorted + FnzDups; 5620e3ece09SJunchao Zhang PetscInt *jbuf2 = jbuf; // temp pointers 5630e3ece09SJunchao Zhang PetscInt *pbuf2 = pbuf; 5640e3ece09SJunchao Zhang for (PetscInt d = 0; d < dupRows; d++) { 5650e3ece09SJunchao Zhang PetscInt i = recvRowPerm[iter + d]; 5660e3ece09SJunchao Zhang PetscInt len = recvRowLen[i + 1] - recvRowLen[i]; 5670e3ece09SJunchao Zhang PetscCall(PetscArraycpy(jbuf2, &recvCol[recvRowLen[i]], len)); 5680e3ece09SJunchao Zhang PetscCall(PetscArraycpy(pbuf2, &recvNzPerm[recvRowLen[i]], len)); 5690e3ece09SJunchao Zhang jbuf2 += len; 5700e3ece09SJunchao Zhang pbuf2 += len; 5710e3ece09SJunchao Zhang nz += len; 5720e3ece09SJunchao Zhang } 5730e3ece09SJunchao Zhang PetscCall(PetscIntSortSemiOrderedWithArray(nz, jbuf, pbuf)); // It could be improved with k-way merge sort, since the rows are already sorted 5740e3ece09SJunchao Zhang 5750e3ece09SJunchao Zhang // Scan column indices (in jbuf[0,nz), might have dups) of this row, and see how many go to Fd and how many go to Fo 5760e3ece09SJunchao Zhang PetscInt cur = 0; 5770e3ece09SJunchao Zhang while (cur < nz) { 5780e3ece09SJunchao Zhang PetscInt curColIdx = jbuf[cur]; 5790e3ece09SJunchao Zhang PetscInt dups = 1; 5800e3ece09SJunchao Zhang 5810e3ece09SJunchao Zhang while (cur + dups < nz && jbuf[cur + dups] == curColIdx) dups++; 5820e3ece09SJunchao Zhang if (curColIdx >= cstart && curColIdx < cend) { 5830e3ece09SJunchao Zhang Fdi[curRowIdx]++; 5840e3ece09SJunchao Zhang FdnzDups += dups; 5850e3ece09SJunchao Zhang } else { 5860e3ece09SJunchao Zhang Foi[curRowIdx]++; 5870e3ece09SJunchao Zhang FonzDups += dups; 5880e3ece09SJunchao Zhang } 5890e3ece09SJunchao Zhang cur += dups; 5900e3ece09SJunchao Zhang } 5910e3ece09SJunchao Zhang 5920e3ece09SJunchao Zhang FnzDups += nz; 5930e3ece09SJunchao Zhang iter += dupRows; // Move to next unique row 5940e3ece09SJunchao Zhang } 5950e3ece09SJunchao Zhang 5960e3ece09SJunchao Zhang Fdi = Fdi_h.data(); // restore Fdi, Foi and make them CSR 5970e3ece09SJunchao Zhang Foi = Foi_h.data(); 5980e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 5990e3ece09SJunchao Zhang Fdi[i + 1] += Fdi[i]; 6000e3ece09SJunchao Zhang Foi[i + 1] += Foi[i]; 6010e3ece09SJunchao Zhang } 6020e3ece09SJunchao Zhang Fdnz = Fdi[Fm]; 6030e3ece09SJunchao Zhang Fonz = Foi[Fm]; 6040e3ece09SJunchao Zhang PetscCall(PetscFree2(sendCol, recvCol)); 6050e3ece09SJunchao Zhang 6060e3ece09SJunchao Zhang // Allocate j, jmap, jperm for Fd and Fo 607*7b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost Fdj_h(NoInit("Fdj_h"), Fdnz), Foj_h(NoInit("Foj_h"), Fonz); 608*7b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdjmap_h(NoInit("Fdjmap_h"), Fdnz + 1), Fojmap_h(NoInit("Fojmap_h"), Fonz + 1); // +1 to make csr 609*7b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdjperm_h(NoInit("Fdjperm_h"), FdnzDups), Fojperm_h(NoInit("Fojperm_h"), FonzDups); 6100e3ece09SJunchao Zhang MatColIdxType *Fdj = Fdj_h.data(), *Foj = Foj_h.data(); 6110e3ece09SJunchao Zhang MatRowMapType *Fdjmap = Fdjmap_h.data(), *Fojmap = Fojmap_h.data(); 6120e3ece09SJunchao Zhang MatRowMapType *Fdjperm = Fdjperm_h.data(), *Fojperm = Fojperm_h.data(); 6130e3ece09SJunchao Zhang 6140e3ece09SJunchao Zhang // Scan recvColSorted[] again, and fill j, jmap, jperm for Fd and Fo 6150e3ece09SJunchao Zhang Fdjmap[0] = 0; 6160e3ece09SJunchao Zhang Fojmap[0] = 0; 6170e3ece09SJunchao Zhang FnzDups = 0; 6180e3ece09SJunchao Zhang Fdnz = 0; 6190e3ece09SJunchao Zhang Fonz = 0; 6200e3ece09SJunchao Zhang iter = 0; // iter over received rows 6210e3ece09SJunchao Zhang while (iter < recvRowCnt) { 6220e3ece09SJunchao Zhang PetscInt curRowIdx = irootloc[recvRowPerm[iter]]; // current row idx 6230e3ece09SJunchao Zhang PetscInt dupRows = 1; // It has this many contributing rows (of various lengths) 6240e3ece09SJunchao Zhang PetscInt nz = 0; // nz (with dups) in the current row 6250e3ece09SJunchao Zhang 6260e3ece09SJunchao Zhang while (iter + dupRows < recvRowCnt && irootloc[recvRowPerm[iter + dupRows]] == curRowIdx) dupRows++; 6270e3ece09SJunchao Zhang for (PetscInt d = 0; d < dupRows; d++) { 6280e3ece09SJunchao Zhang PetscInt i = recvRowPerm[iter + d]; 6290e3ece09SJunchao Zhang nz += recvRowLen[i + 1] - recvRowLen[i]; 6300e3ece09SJunchao Zhang } 6310e3ece09SJunchao Zhang 6320e3ece09SJunchao Zhang PetscInt *jbuf = recvColSorted + FnzDups; 6330e3ece09SJunchao Zhang // Scan columns (in jbuf[0,nz) of this row, copy them and their permutation to j[] and jperm[] of Fd and Fo 6340e3ece09SJunchao Zhang PetscInt cur = 0; 6350e3ece09SJunchao Zhang while (cur < nz) { 6360e3ece09SJunchao Zhang PetscInt curColIdx = jbuf[cur]; 6370e3ece09SJunchao Zhang PetscInt dups = 1; 6380e3ece09SJunchao Zhang 6390e3ece09SJunchao Zhang while (cur + dups < nz && jbuf[cur + dups] == curColIdx) dups++; 6400e3ece09SJunchao Zhang if (curColIdx >= cstart && curColIdx < cend) { 6410e3ece09SJunchao Zhang Fdj[Fdnz] = curColIdx - cstart; // easily convert to local 6420e3ece09SJunchao Zhang Fdjmap[Fdnz + 1] = Fdjmap[Fdnz] + dups; 6430e3ece09SJunchao Zhang for (PetscInt j = 0; j < dups; j++) Fdjperm[Fdjmap[Fdnz] + j] = recvNzPermSorted[FnzDups + j]; 6440e3ece09SJunchao Zhang FdnzDups += dups; 6450e3ece09SJunchao Zhang Fdnz++; 6460e3ece09SJunchao Zhang } else { 6470e3ece09SJunchao Zhang Foj[Fonz] = curColIdx; // in global 6480e3ece09SJunchao Zhang Fojmap[Fonz + 1] = Fojmap[Fonz] + dups; 6490e3ece09SJunchao Zhang for (PetscInt j = 0; j < dups; j++) Fojperm[Fojmap[Fonz] + j] = recvNzPermSorted[FnzDups + j]; 6500e3ece09SJunchao Zhang FonzDups += dups; 6510e3ece09SJunchao Zhang Fonz++; 6520e3ece09SJunchao Zhang } 6530e3ece09SJunchao Zhang cur += dups; 6540e3ece09SJunchao Zhang FnzDups += dups; 6550e3ece09SJunchao Zhang } 6560e3ece09SJunchao Zhang iter += dupRows; // Move to next unique row 6570e3ece09SJunchao Zhang } 6580e3ece09SJunchao Zhang PetscCall(PetscFree4(recvRowPerm, recvColSorted, recvNzPerm, recvNzPermSorted)); 6590e3ece09SJunchao Zhang PetscCall(PetscFree5(sendRowLen, recvRowLen, sdisp, rdisp, reqs)); 6600e3ece09SJunchao Zhang 6610e3ece09SJunchao Zhang // Combine global column indices in garray1[] and Foj[] 6620e3ece09SJunchao Zhang PetscInt n2, *garray2; 6630e3ece09SJunchao Zhang 6640e3ece09SJunchao Zhang PetscCall(ReduceTwoSetsOfGlobalIndices(n1, garray1, Fonz, Foj, &n2, &garray2, map)); 6650e3ece09SJunchao Zhang mm->sf = reduceSF; 666*7b8d4ba6SJunchao Zhang mm->leafBuf = MatScalarKokkosView(NoInit("leafBuf"), nleaves); 667*7b8d4ba6SJunchao Zhang mm->rootBuf = MatScalarKokkosView(NoInit("rootBuf"), nroots); 668aaa8cc7dSPierre Jolivet mm->garray = garray2; // give ownership, so no free 6690e3ece09SJunchao Zhang mm->n = n2; 6700e3ece09SJunchao Zhang mm->E_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), E_NzLeft_h); 6710e3ece09SJunchao Zhang mm->Fdjmap = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdjmap_h); 6720e3ece09SJunchao Zhang mm->Fdjperm = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdjperm_h); 6730e3ece09SJunchao Zhang mm->Fojmap = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fojmap_h); 6740e3ece09SJunchao Zhang mm->Fojperm = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fojperm_h); 6750e3ece09SJunchao Zhang 6760e3ece09SJunchao Zhang // Output Fd and Fo in KokkosCsrMatrix format 677*7b8d4ba6SJunchao Zhang MatScalarKokkosView Fda_d(NoInit("Fda_d"), Fdnz); 6780e3ece09SJunchao Zhang MatRowMapKokkosView Fdi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdi_h); 6790e3ece09SJunchao Zhang MatColIdxKokkosView Fdj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdj_h); 680*7b8d4ba6SJunchao Zhang MatScalarKokkosView Foa_d(NoInit("Foa_d"), Fonz); 6810e3ece09SJunchao Zhang MatRowMapKokkosView Foi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foi_h); 6820e3ece09SJunchao Zhang MatColIdxKokkosView Foj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foj_h); 6830e3ece09SJunchao Zhang 6840e3ece09SJunchao Zhang PetscCallCXX(mm->Fd = KokkosCsrMatrix("Fd", Fm, cend - cstart, Fdnz, Fda_d, Fdi_d, Fdj_d)); 6850e3ece09SJunchao Zhang PetscCallCXX(mm->Fo = KokkosCsrMatrix("Fo", Fm, n2, Fonz, Foa_d, Foi_d, Foj_d)); // Fo's column size is n2, length of garray2[] 6860e3ece09SJunchao Zhang 6870e3ece09SJunchao Zhang // Compute kernel launch parameters in merging E 6880e3ece09SJunchao Zhang PetscInt teamSize, vectorLength, rowsPerTeam; 6890e3ece09SJunchao Zhang 6900e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 6910e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(Em, Enz, -1, teamSize, vectorLength, rowsPerTeam)); 6920e3ece09SJunchao Zhang mm->E_TeamSize = teamSize; 6930e3ece09SJunchao Zhang mm->E_VectorLength = vectorLength; 6940e3ece09SJunchao Zhang mm->E_RowsPerTeam = rowsPerTeam; 6950e3ece09SJunchao Zhang } else PetscCheck(reuse == MAT_REUSE_MATRIX, comm, PETSC_ERR_PLIB, "Unsupported MatReuse enum %d", reuse); 6960e3ece09SJunchao Zhang 6970e3ece09SJunchao Zhang // Handy aliases 6980e3ece09SJunchao Zhang auto &Aa = A.values; 6990e3ece09SJunchao Zhang auto &Ba = B.values; 7000e3ece09SJunchao Zhang const auto &Ai = A.graph.row_map; 7010e3ece09SJunchao Zhang const auto &Bi = B.graph.row_map; 7020e3ece09SJunchao Zhang const auto &E_NzLeft = mm->E_NzLeft; 7030e3ece09SJunchao Zhang auto &leafBuf = mm->leafBuf; 7040e3ece09SJunchao Zhang auto &rootBuf = mm->rootBuf; 7050e3ece09SJunchao Zhang PetscSF reduceSF = mm->sf; 7060e3ece09SJunchao Zhang PetscInt Em = A.numRows(); 7070e3ece09SJunchao Zhang PetscInt teamSize = mm->E_TeamSize; 7080e3ece09SJunchao Zhang PetscInt vectorLength = mm->E_VectorLength; 7090e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->E_RowsPerTeam; 7100e3ece09SJunchao Zhang PetscInt workSets = (Em + rowsPerTeam - 1) / rowsPerTeam; 7110e3ece09SJunchao Zhang 7120e3ece09SJunchao Zhang // Copy rows in A/B of E to leafBuf, then pass it to rootBuf 7130e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 7140e3ece09SJunchao Zhang Kokkos::TeamPolicy<>(workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 7150e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 7160e3ece09SJunchao Zhang PetscInt i = t.league_rank() * rowsPerTeam + k; // i-th row in F 7170e3ece09SJunchao Zhang if (i < Em) { 7180e3ece09SJunchao Zhang PetscInt disp = Ai(i) + Bi(i); 7190e3ece09SJunchao Zhang PetscInt alen = Ai(i + 1) - Ai(i); 7200e3ece09SJunchao Zhang PetscInt blen = Bi(i + 1) - Bi(i); 7210e3ece09SJunchao Zhang PetscInt nzleft = E_NzLeft(i); 7220e3ece09SJunchao Zhang 7230e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 7240e3ece09SJunchao Zhang MatScalar &val = leafBuf(disp + j); 7250e3ece09SJunchao Zhang if (j < nzleft) { // B left 7260e3ece09SJunchao Zhang val = Ba(Bi(i) + j); 7270e3ece09SJunchao Zhang } else if (j < nzleft + alen) { // diag A 7280e3ece09SJunchao Zhang val = Aa(Ai(i) + j - nzleft); 7290e3ece09SJunchao Zhang } else { // B right 7300e3ece09SJunchao Zhang val = Ba(Bi(i) + j - alen); 731f0e6e2d1SJunchao Zhang } 732f0e6e2d1SJunchao Zhang }); 733f0e6e2d1SJunchao Zhang } 734f0e6e2d1SJunchao Zhang }); 7350e3ece09SJunchao Zhang })); 7360e3ece09SJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(reduceSF, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, leafBuf.data(), PETSC_MEMTYPE_KOKKOS, rootBuf.data(), MPI_REPLACE)); 737f0e6e2d1SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 738f0e6e2d1SJunchao Zhang } 7390e3ece09SJunchao Zhang 740aaa8cc7dSPierre Jolivet // To finish MatMPIAIJKokkosReduce. 7410e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosReduceEnd(MPI_Comm comm, KokkosCsrMatrix A, KokkosCsrMatrix B, PetscInt cstart, PetscInt cend, const PetscInt *garray1, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AtB *mm) 7420e3ece09SJunchao Zhang { 7430e3ece09SJunchao Zhang PetscFunctionBegin; 7440e3ece09SJunchao Zhang auto &leafBuf = mm->leafBuf; 7450e3ece09SJunchao Zhang auto &rootBuf = mm->rootBuf; 7460e3ece09SJunchao Zhang auto &Fda = mm->Fd.values; 7470e3ece09SJunchao Zhang const auto &Fdjmap = mm->Fdjmap; 7480e3ece09SJunchao Zhang const auto &Fdjperm = mm->Fdjperm; 7490e3ece09SJunchao Zhang auto Fdnz = mm->Fd.nnz(); 7500e3ece09SJunchao Zhang auto &Foa = mm->Fo.values; 7510e3ece09SJunchao Zhang const auto &Fojmap = mm->Fojmap; 7520e3ece09SJunchao Zhang const auto &Fojperm = mm->Fojperm; 7530e3ece09SJunchao Zhang auto Fonz = mm->Fo.nnz(); 7540e3ece09SJunchao Zhang PetscSF reduceSF = mm->sf; 7550e3ece09SJunchao Zhang 7560e3ece09SJunchao Zhang PetscCall(PetscSFReduceEnd(reduceSF, MPIU_SCALAR, leafBuf.data(), rootBuf.data(), MPI_REPLACE)); 7570e3ece09SJunchao Zhang 7580e3ece09SJunchao Zhang // Reduce data in rootBuf to Fd and Fo 7590e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 7600e3ece09SJunchao Zhang Fdnz, KOKKOS_LAMBDA(const MatRowMapType i) { 7610e3ece09SJunchao Zhang PetscScalar sum = 0.0; 7620e3ece09SJunchao Zhang for (MatRowMapType k = Fdjmap(i); k < Fdjmap(i + 1); k++) sum += rootBuf(Fdjperm(k)); 7630e3ece09SJunchao Zhang Fda(i) = sum; 7640e3ece09SJunchao Zhang })); 7650e3ece09SJunchao Zhang 7660e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 7670e3ece09SJunchao Zhang Fonz, KOKKOS_LAMBDA(const MatRowMapType i) { 7680e3ece09SJunchao Zhang PetscScalar sum = 0.0; 7690e3ece09SJunchao Zhang for (MatRowMapType k = Fojmap(i); k < Fojmap(i + 1); k++) sum += rootBuf(Fojperm(k)); 7700e3ece09SJunchao Zhang Foa(i) = sum; 7710e3ece09SJunchao Zhang })); 7720e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 7730e3ece09SJunchao Zhang } 7740e3ece09SJunchao Zhang 7750e3ece09SJunchao Zhang /* 7760e3ece09SJunchao Zhang MatMPIAIJKokkosBcast - Bcast local rows of a MPIAIJKOKKOS matrix (E) to produce a local matrix (F, stored in mm) in split form 7770e3ece09SJunchao Zhang 7780e3ece09SJunchao Zhang This is a complex routine. It is essentially the MPIAIJKOKKOS counterpart of MatGetBrowsOfAoCols_MPIAIJ, but supports 7790e3ece09SJunchao Zhang device and involves various index mapping. 7800e3ece09SJunchao Zhang 7810e3ece09SJunchao Zhang In the given ownerSF, leaves correspond to rows in F, and roots correspond to rows in E. Roots may connect to multiple leaves. 7820e3ece09SJunchao Zhang Suppose F's j-th row is connected to a root identified by PetscSFNode (k,i), it means we need to bcast the i-th row of E on rank k 7830e3ece09SJunchao Zhang to j-th row of F. ownerSF is not an arbitrary SF, instead it is the Mvctx of another MPIAIJ matrix A that is able to perform A*E. 7840e3ece09SJunchao Zhang F has the same column layout as E. 7850e3ece09SJunchao Zhang 7860e3ece09SJunchao Zhang Conceptually F has global column indices. In this routine, we spit F into diagonal Fd and off-diagonal Fo. 787aaa8cc7dSPierre Jolivet Fd uses local column indices, which are easy to compute. We just need to subtract the "local column range start" from the global indices. 7880e3ece09SJunchao Zhang Fo had global column indices at first. We will reduce them into local ones. In doing that, we also take into account the global 7890e3ece09SJunchao Zhang column indices that E's off-diag block has. Let's say there are n1 such indices stored in garray1[]. We will reduce them along with 7900e3ece09SJunchao Zhang column indices in Fo and update Fo with local indices. 7910e3ece09SJunchao Zhang 7920e3ece09SJunchao Zhang Input Parameters: 7930e3ece09SJunchao Zhang + E - the MPIAIJKOKKOS matrix 7940e3ece09SJunchao Zhang . ownerSF - the ownership SF (nonsignificant in MAT_REUSE_MATRIX) 7950e3ece09SJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 7960e3ece09SJunchao Zhang - mm - to stash matproduct intermediate data structures 7970e3ece09SJunchao Zhang 7980e3ece09SJunchao Zhang Output Parameters: 7990e3ece09SJunchao Zhang + map[n1] - allocated by caller. It maps garray1[] to garray2[]. See more at ReduceTwoSetsOfGlobalIndices. 8000e3ece09SJunchao Zhang - mm - contains various info, such as garray2[], Fd, Fo, etc. 8010e3ece09SJunchao Zhang 8020e3ece09SJunchao Zhang Notes: 8030e3ece09SJunchao Zhang When reuse = MAT_REUSE_MATRIX, ownerSF, map are not significant. 8040e3ece09SJunchao Zhang The routine is provide in split-phase form MatMPIAIJKokkosBcastBegin/End() to provide computation/communication opportunities. 8050e3ece09SJunchao Zhang */ 8060e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosBcastBegin(Mat E, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AB *mm) 8070e3ece09SJunchao Zhang { 8080e3ece09SJunchao Zhang Mat_MPIAIJ *empi = static_cast<Mat_MPIAIJ *>(E->data); 8090e3ece09SJunchao Zhang Mat A = empi->A, B = empi->B; // diag and off-diag 8100e3ece09SJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos *>(A->spptr), *bkok = static_cast<Mat_SeqAIJKokkos *>(B->spptr); 8110e3ece09SJunchao Zhang PetscInt Em = E->rmap->n; // #local rows 8120e3ece09SJunchao Zhang MPI_Comm comm; 8130e3ece09SJunchao Zhang 8140e3ece09SJunchao Zhang PetscFunctionBegin; 8150e3ece09SJunchao Zhang PetscCallMPI(PetscObjectGetComm((PetscObject)E, &comm)); 8160e3ece09SJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 8170e3ece09SJunchao Zhang Mat_SeqAIJ *aseq = static_cast<Mat_SeqAIJ *>(A->data), *bseq = static_cast<Mat_SeqAIJ *>(B->data); 8180e3ece09SJunchao Zhang PetscInt n1 = B->cmap->n, *Ai = aseq->i, *Aj = aseq->j, *Bi = bseq->i, *Bj = bseq->j; 8190e3ece09SJunchao Zhang const PetscInt *garray1 = empi->garray; // its size is n1 8200e3ece09SJunchao Zhang PetscInt cstart, cend; 8210e3ece09SJunchao Zhang PetscSF bcastSF; 8220e3ece09SJunchao Zhang 8230e3ece09SJunchao Zhang PetscCall(MatGetOwnershipRangeColumn(E, &cstart, &cend)); 8240e3ece09SJunchao Zhang 8250e3ece09SJunchao Zhang // Count how many nonzeros of each row in E are in the left of the diag block [cstart,cend) 826*7b8d4ba6SJunchao Zhang PetscIntKokkosViewHost E_NzLeft_h(NoInit("E_NzLeft_h"), Em), E_RowLen_h(NoInit("E_RowLen_h"), Em); 8270e3ece09SJunchao Zhang PetscInt *E_NzLeft = E_NzLeft_h.data(), *E_RowLen = E_RowLen_h.data(); 8280e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) { 8290e3ece09SJunchao Zhang const PetscInt *first, *last, *it; 8300e3ece09SJunchao Zhang PetscInt count, step; 8310e3ece09SJunchao Zhang // std::lower_bound(first,last,cstart), but need to use global column indices 8320e3ece09SJunchao Zhang first = Bj + Bi[i]; 8330e3ece09SJunchao Zhang last = Bj + Bi[i + 1]; 8340e3ece09SJunchao Zhang count = last - first; 8350e3ece09SJunchao Zhang while (count > 0) { 8360e3ece09SJunchao Zhang it = first; 8370e3ece09SJunchao Zhang step = count / 2; 8380e3ece09SJunchao Zhang it += step; 8390e3ece09SJunchao Zhang if (empi->garray[*it] < cstart) { // map local to global 8400e3ece09SJunchao Zhang first = ++it; 8410e3ece09SJunchao Zhang count -= step + 1; 8420e3ece09SJunchao Zhang } else count = step; 8430e3ece09SJunchao Zhang } 8440e3ece09SJunchao Zhang E_NzLeft[i] = first - (Bj + Bi[i]); 8450e3ece09SJunchao Zhang E_RowLen[i] = (Ai[i + 1] - Ai[i]) + (Bi[i + 1] - Bi[i]); 8460e3ece09SJunchao Zhang } 8470e3ece09SJunchao Zhang 8480e3ece09SJunchao Zhang // Compute row pointer Fi of F 8490e3ece09SJunchao Zhang PetscInt *Fi, Fm, Fnz; 8500e3ece09SJunchao Zhang PetscCall(PetscSFGetGraph(ownerSF, NULL, &Fm, NULL, NULL)); // Fm = #rows of F = nleaves of ownerSF 8510e3ece09SJunchao Zhang PetscCall(PetscMalloc1(Fm + 1, &Fi)); 8520e3ece09SJunchao Zhang Fi[0] = 0; 8530e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(ownerSF, MPIU_INT, PETSC_MEMTYPE_HOST, E_RowLen, PETSC_MEMTYPE_HOST, &Fi[1], MPI_REPLACE)); 8540e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(ownerSF, MPIU_INT, E_RowLen, &Fi[1], MPI_REPLACE)); 8550e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) Fi[i + 1] += Fi[i]; 8560e3ece09SJunchao Zhang Fnz = Fi[Fm]; 8570e3ece09SJunchao Zhang 8580e3ece09SJunchao Zhang // Build the real PetscSF for bcasting E rows (buffer to buffer) 8590e3ece09SJunchao Zhang const PetscMPIInt *iranks, *ranks; 8600e3ece09SJunchao Zhang const PetscInt *ioffset, *irootloc, *roffset; 8610e3ece09SJunchao Zhang PetscInt niranks, nranks, *sdisp, *rdisp; 8620e3ece09SJunchao Zhang MPI_Request *reqs; 8630e3ece09SJunchao Zhang PetscMPIInt tag; 8640e3ece09SJunchao Zhang 8650e3ece09SJunchao Zhang PetscCall(PetscSFGetLeafRanks(ownerSF, &niranks, &iranks, &ioffset, &irootloc)); // get leaf ranks referencing roots on this process 8660e3ece09SJunchao Zhang PetscCall(PetscSFGetRootRanks(ownerSF, &nranks, &ranks, &roffset, NULL, NULL)); // recv info 8670e3ece09SJunchao Zhang PetscCall(PetscMalloc3(niranks + 1, &sdisp, nranks, &rdisp, niranks + nranks, &reqs)); 8680e3ece09SJunchao Zhang 8690e3ece09SJunchao Zhang sdisp[0] = 0; // send displacement 8700e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { 8710e3ece09SJunchao Zhang sdisp[i + 1] = sdisp[i]; 8720e3ece09SJunchao Zhang for (PetscInt j = ioffset[i]; j < ioffset[i + 1]; j++) { 8730e3ece09SJunchao Zhang PetscInt r = irootloc[j]; // row to be sent 8740e3ece09SJunchao Zhang sdisp[i + 1] += E_RowLen[r]; 8750e3ece09SJunchao Zhang } 8760e3ece09SJunchao Zhang } 8770e3ece09SJunchao Zhang 8780e3ece09SJunchao Zhang PetscCallMPI(PetscCommGetNewTag(comm, &tag)); 8790e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) PetscCallMPI(MPI_Irecv(&rdisp[i], 1, MPIU_INT, ranks[i], tag, comm, &reqs[i])); 8800e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) PetscCallMPI(MPI_Isend(&sdisp[i], 1, MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i])); 8810e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(niranks + nranks, reqs, MPI_STATUSES_IGNORE)); 8820e3ece09SJunchao Zhang 8830e3ece09SJunchao Zhang PetscInt nleaves = Fnz; // leaves are nonzeros I will receive 8840e3ece09SJunchao Zhang PetscInt nroots = sdisp[niranks]; // roots are nonzeros I will send 8850e3ece09SJunchao Zhang PetscSFNode *iremote; // give ownership to bcastSF 8860e3ece09SJunchao Zhang PetscCall(PetscMalloc1(nleaves, &iremote)); 8870e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { // for each sender rank 8880e3ece09SJunchao Zhang PetscInt k = 0; 8890e3ece09SJunchao Zhang for (PetscInt j = Fi[roffset[i]]; j < Fi[roffset[i + 1]]; j++) { // I will receive rows [roffset[i], roffset[i+1]) of F from ranks[i] 8900e3ece09SJunchao Zhang iremote[j].rank = ranks[i]; 8910e3ece09SJunchao Zhang iremote[j].index = rdisp[i] + k; // their root location 8920e3ece09SJunchao Zhang k++; 8930e3ece09SJunchao Zhang } 8940e3ece09SJunchao Zhang } 8950e3ece09SJunchao Zhang PetscCall(PetscSFCreate(comm, &bcastSF)); 8960e3ece09SJunchao Zhang PetscCall(PetscSFSetGraph(bcastSF, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 8970e3ece09SJunchao Zhang PetscCall(PetscFree3(sdisp, rdisp, reqs)); 8980e3ece09SJunchao Zhang 8990e3ece09SJunchao Zhang // Build a plan (rowoffset, irootloc, E_NzLeft) to copy rows in E to rootdata of bcastSF in parallel 900*7b8d4ba6SJunchao Zhang PetscIntKokkosViewHost rowoffset_h(NoInit("rowoffset_h"), ioffset[niranks] + 1); 9010e3ece09SJunchao Zhang PetscInt *rowoffset = rowoffset_h.data(); // for each entry (row) indicated in irootloc[], we calculate its destinate offset in copying 9020e3ece09SJunchao Zhang rowoffset[0] = 0; 903*7b8d4ba6SJunchao Zhang for (PetscInt i = 0; i < ioffset[niranks]; i++) { rowoffset[i + 1] = rowoffset[i] + E_RowLen[irootloc[i]]; } 9040e3ece09SJunchao Zhang 9050e3ece09SJunchao Zhang // Copy (global) column indices of the needed rows in E to a buffer, and then bcast to Fj[] 9060e3ece09SJunchao Zhang PetscInt *jbuf, *Fj; 9070e3ece09SJunchao Zhang PetscCall(PetscMalloc2(nroots, &jbuf, Fnz, &Fj)); 9080e3ece09SJunchao Zhang for (PetscInt k = 0; k < ioffset[niranks]; k++) { 9090e3ece09SJunchao Zhang PetscInt i = irootloc[k]; // row to be copied 9100e3ece09SJunchao Zhang PetscInt *buf = &jbuf[rowoffset[k]]; 9110e3ece09SJunchao Zhang PetscInt nzLeft = E_NzLeft[i]; 9120e3ece09SJunchao Zhang PetscInt alen = Ai[i + 1] - Ai[i], blen = Bi[i + 1] - Bi[i]; 9130e3ece09SJunchao Zhang for (PetscInt j = 0; j < alen + blen; j++) { 9140e3ece09SJunchao Zhang if (j < nzLeft) { 9150e3ece09SJunchao Zhang buf[j] = empi->garray[Bj[Bi[i] + j]]; // left B, in global 9160e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { 9170e3ece09SJunchao Zhang buf[j] = Aj[Ai[i] + j - nzLeft] + cstart; // diag A, also in global 9180e3ece09SJunchao Zhang } else { 9190e3ece09SJunchao Zhang buf[j] = empi->garray[Bj[Bi[i] + j - alen]]; // right B, in global 9200e3ece09SJunchao Zhang } 9210e3ece09SJunchao Zhang } 9220e3ece09SJunchao Zhang } 9230e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(bcastSF, MPIU_INT, PETSC_MEMTYPE_HOST, jbuf, PETSC_MEMTYPE_HOST, Fj, MPI_REPLACE)); 9240e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(bcastSF, MPIU_INT, jbuf, Fj, MPI_REPLACE)); 9250e3ece09SJunchao Zhang 9260e3ece09SJunchao Zhang // Build a plan (i.e., F_NzLeft) to split F into Fd and Fo 927*7b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdi_h(NoInit("Fdi_h"), Fm + 1), Foi_h(NoInit("Foi_h"), Fm + 1); // row pointer of Fd, Fo 928*7b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost F_NzLeft_h(NoInit("F_NzLeft_h"), Fm); // split each row of F into Left, Diag, Right. We only need to record #nz in Left and Diag. 9290e3ece09SJunchao Zhang MatRowMapType *Fdi = Fdi_h.data(), *Foi = Foi_h.data(); 9300e3ece09SJunchao Zhang MatColIdxType *F_NzLeft = F_NzLeft_h.data(); 9310e3ece09SJunchao Zhang 9320e3ece09SJunchao Zhang Fdi[0] = Foi[0] = 0; 9330e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9340e3ece09SJunchao Zhang PetscInt *first, *last, *lb1, *lb2; 9350e3ece09SJunchao Zhang // cut the row into: Left, [cstart, cend), Right 9360e3ece09SJunchao Zhang first = Fj + Fi[i]; 9370e3ece09SJunchao Zhang last = Fj + Fi[i + 1]; 9380e3ece09SJunchao Zhang lb1 = std::lower_bound(first, last, cstart); 9390e3ece09SJunchao Zhang F_NzLeft[i] = lb1 - first; 9400e3ece09SJunchao Zhang lb2 = std::lower_bound(first, last, cend); 9410e3ece09SJunchao Zhang Fdi[i + 1] = lb2 - lb1; // row i length in Fdi 9420e3ece09SJunchao Zhang Foi[i + 1] = (Fi[i + 1] - Fi[i]) - Fdi[i + 1]; // row i length in Foi 9430e3ece09SJunchao Zhang } 9440e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9450e3ece09SJunchao Zhang Fdi[i + 1] += Fdi[i]; 9460e3ece09SJunchao Zhang Foi[i + 1] += Foi[i]; 9470e3ece09SJunchao Zhang } 9480e3ece09SJunchao Zhang 9490e3ece09SJunchao Zhang // Fill Fdj[] and Foj[], i.e., columns of Fd and Fo. Fdj[] are local, but Foj[] are not yet. 9500e3ece09SJunchao Zhang PetscInt Fdnz = Fdi[Fm], Fonz = Foi[Fm]; 951*7b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost Fdj_h(NoInit("Fdj_h"), Fdnz), Foj_h(NoInit("Foj_h"), Fonz); 9520e3ece09SJunchao Zhang MatColIdxType *Fdj = Fdj_h.data(), *Foj = Foj_h.data(), gid; 9530e3ece09SJunchao Zhang 9540e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9550e3ece09SJunchao Zhang PetscInt nzLeft = F_NzLeft[i]; 9560e3ece09SJunchao Zhang PetscInt len = Fdi[i + 1] - Fdi[i]; // diag row len 9570e3ece09SJunchao Zhang for (PetscInt j = 0; j < Fi[i + 1] - Fi[i]; j++) { 9580e3ece09SJunchao Zhang gid = Fj[Fi[i] + j]; 9590e3ece09SJunchao Zhang if (j < nzLeft) { // left, in global 9600e3ece09SJunchao Zhang Foj[Foi[i] + j] = gid; 9610e3ece09SJunchao Zhang } else if (j < nzLeft + len) { // diag, in local 9620e3ece09SJunchao Zhang Fdj[Fdi[i] + j - nzLeft] = gid - cstart; 9630e3ece09SJunchao Zhang } else { // right, in global 9640e3ece09SJunchao Zhang Foj[Foi[i] + j - len] = gid; 9650e3ece09SJunchao Zhang } 9660e3ece09SJunchao Zhang } 9670e3ece09SJunchao Zhang } 9680e3ece09SJunchao Zhang PetscCall(PetscFree2(jbuf, Fj)); 9690e3ece09SJunchao Zhang PetscCall(PetscFree(Fi)); 9700e3ece09SJunchao Zhang 9710e3ece09SJunchao Zhang // Reduce global indices in Foj[] and garray1[] into local ones 9720e3ece09SJunchao Zhang PetscInt n2, *garray2; 9730e3ece09SJunchao Zhang PetscCall(ReduceTwoSetsOfGlobalIndices(n1, garray1, Fonz, Foj, &n2, &garray2, map)); 9740e3ece09SJunchao Zhang 9750e3ece09SJunchao Zhang // Record the plans built above, for reuse 9760e3ece09SJunchao Zhang PetscIntKokkosViewHost tmp(const_cast<PetscInt *>(irootloc), ioffset[niranks]); // irootloc[] is owned by ownerSF. We create a copy for safety 977*7b8d4ba6SJunchao Zhang PetscIntKokkosViewHost irootloc_h(NoInit("irootloc_h"), ioffset[niranks]); 9780e3ece09SJunchao Zhang Kokkos::deep_copy(irootloc_h, tmp); 9790e3ece09SJunchao Zhang mm->sf = bcastSF; 9800e3ece09SJunchao Zhang mm->E_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), E_NzLeft_h); 9810e3ece09SJunchao Zhang mm->F_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), F_NzLeft_h); 9820e3ece09SJunchao Zhang mm->irootloc = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), irootloc_h); 9830e3ece09SJunchao Zhang mm->rowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), rowoffset_h); 984*7b8d4ba6SJunchao Zhang mm->rootBuf = MatScalarKokkosView(NoInit("rootBuf"), nroots); 985*7b8d4ba6SJunchao Zhang mm->leafBuf = MatScalarKokkosView(NoInit("leafBuf"), nleaves); 9860e3ece09SJunchao Zhang mm->garray = garray2; 9870e3ece09SJunchao Zhang mm->n = n2; 9880e3ece09SJunchao Zhang 9890e3ece09SJunchao Zhang // Output Fd and Fo in KokkosCsrMatrix format 990*7b8d4ba6SJunchao Zhang MatScalarKokkosView Fda_d(NoInit("Fda_d"), Fdnz), Foa_d(NoInit("Foa_d"), Fonz); 9910e3ece09SJunchao Zhang MatRowMapKokkosView Fdi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdi_h); 9920e3ece09SJunchao Zhang MatColIdxKokkosView Fdj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdj_h); 9930e3ece09SJunchao Zhang MatRowMapKokkosView Foi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foi_h); 9940e3ece09SJunchao Zhang MatColIdxKokkosView Foj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foj_h); 9950e3ece09SJunchao Zhang 9960e3ece09SJunchao Zhang PetscCallCXX(mm->Fd = KokkosCsrMatrix("Fd", Fm, cend - cstart, Fdnz, Fda_d, Fdi_d, Fdj_d)); 9970e3ece09SJunchao Zhang PetscCallCXX(mm->Fo = KokkosCsrMatrix("Fo", Fm, n2, Fonz, Foa_d, Foi_d, Foj_d)); 9980e3ece09SJunchao Zhang 9990e3ece09SJunchao Zhang // Compute kernel launch parameters in merging E or splitting F 10000e3ece09SJunchao Zhang PetscInt teamSize, vectorLength, rowsPerTeam; 10010e3ece09SJunchao Zhang 10020e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 10030e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(mm->irootloc.extent(0), mm->rootBuf.extent(0), -1, teamSize, vectorLength, rowsPerTeam)); 10040e3ece09SJunchao Zhang mm->E_TeamSize = teamSize; 10050e3ece09SJunchao Zhang mm->E_VectorLength = vectorLength; 10060e3ece09SJunchao Zhang mm->E_RowsPerTeam = rowsPerTeam; 10070e3ece09SJunchao Zhang 10080e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 10090e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(Fm, Fnz, -1, teamSize, vectorLength, rowsPerTeam)); 10100e3ece09SJunchao Zhang mm->F_TeamSize = teamSize; 10110e3ece09SJunchao Zhang mm->F_VectorLength = vectorLength; 10120e3ece09SJunchao Zhang mm->F_RowsPerTeam = rowsPerTeam; 10130e3ece09SJunchao Zhang } else PetscCheck(reuse == MAT_REUSE_MATRIX, comm, PETSC_ERR_PLIB, "Unsupported MatReuse enum %d", reuse); 10140e3ece09SJunchao Zhang 10150e3ece09SJunchao Zhang // Sync E's value to device 10160e3ece09SJunchao Zhang akok->a_dual.sync_device(); 10170e3ece09SJunchao Zhang bkok->a_dual.sync_device(); 10180e3ece09SJunchao Zhang 10190e3ece09SJunchao Zhang // Handy aliases 10200e3ece09SJunchao Zhang const auto &Aa = akok->a_dual.view_device(); 10210e3ece09SJunchao Zhang const auto &Ba = bkok->a_dual.view_device(); 10220e3ece09SJunchao Zhang const auto &Ai = akok->i_dual.view_device(); 10230e3ece09SJunchao Zhang const auto &Bi = bkok->i_dual.view_device(); 10240e3ece09SJunchao Zhang 10250e3ece09SJunchao Zhang // Fetch the plans 10260e3ece09SJunchao Zhang PetscIntKokkosView &E_NzLeft = mm->E_NzLeft; 10270e3ece09SJunchao Zhang PetscSF &bcastSF = mm->sf; 10280e3ece09SJunchao Zhang MatScalarKokkosView &rootBuf = mm->rootBuf; 10290e3ece09SJunchao Zhang MatScalarKokkosView &leafBuf = mm->leafBuf; 10300e3ece09SJunchao Zhang PetscIntKokkosView &irootloc = mm->irootloc; 10310e3ece09SJunchao Zhang PetscIntKokkosView &rowoffset = mm->rowoffset; 10320e3ece09SJunchao Zhang 10330e3ece09SJunchao Zhang PetscInt teamSize = mm->E_TeamSize; 10340e3ece09SJunchao Zhang PetscInt vectorLength = mm->E_VectorLength; 10350e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->E_RowsPerTeam; 10360e3ece09SJunchao Zhang PetscInt workSets = (irootloc.extent(0) + rowsPerTeam - 1) / rowsPerTeam; 10370e3ece09SJunchao Zhang 10380e3ece09SJunchao Zhang // Copy rows in A/B of E to rootBuf, then bcast it to leafBuf 10390e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 10400e3ece09SJunchao Zhang Kokkos::TeamPolicy<>(workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 10410e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 10420e3ece09SJunchao Zhang size_t r = t.league_rank() * rowsPerTeam + k; // r-th entry in irootloc[] 10430e3ece09SJunchao Zhang if (r < irootloc.extent(0)) { 10440e3ece09SJunchao Zhang PetscInt i = irootloc(r); // row i of E 10450e3ece09SJunchao Zhang PetscInt disp = rowoffset(r); 10460e3ece09SJunchao Zhang PetscInt alen = Ai(i + 1) - Ai(i); 10470e3ece09SJunchao Zhang PetscInt blen = Bi(i + 1) - Bi(i); 10480e3ece09SJunchao Zhang PetscInt nzleft = E_NzLeft(i); 10490e3ece09SJunchao Zhang 10500e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 10510e3ece09SJunchao Zhang if (j < nzleft) { // B left 10520e3ece09SJunchao Zhang rootBuf(disp + j) = Ba(Bi(i) + j); 10530e3ece09SJunchao Zhang } else if (j < nzleft + alen) { // diag A 10540e3ece09SJunchao Zhang rootBuf(disp + j) = Aa(Ai(i) + j - nzleft); 10550e3ece09SJunchao Zhang } else { // B right 10560e3ece09SJunchao Zhang rootBuf(disp + j) = Ba(Bi(i) + j - alen); 10570e3ece09SJunchao Zhang } 10580e3ece09SJunchao Zhang }); 10590e3ece09SJunchao Zhang } 10600e3ece09SJunchao Zhang }); 10610e3ece09SJunchao Zhang })); 10620e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(bcastSF, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, rootBuf.data(), PETSC_MEMTYPE_KOKKOS, leafBuf.data(), MPI_REPLACE)); 10630e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 10640e3ece09SJunchao Zhang } 10650e3ece09SJunchao Zhang 10660e3ece09SJunchao Zhang // To finish MatMPIAIJKokkosBcast. 10670e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosBcastEnd(Mat E, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AB *mm) 10680e3ece09SJunchao Zhang { 10690e3ece09SJunchao Zhang PetscFunctionBegin; 10700e3ece09SJunchao Zhang const auto &Fd = mm->Fd; 10710e3ece09SJunchao Zhang const auto &Fo = mm->Fo; 10720e3ece09SJunchao Zhang const auto &Fdi = Fd.graph.row_map; 10730e3ece09SJunchao Zhang const auto &Foi = Fo.graph.row_map; 10740e3ece09SJunchao Zhang auto &Fda = Fd.values; 10750e3ece09SJunchao Zhang auto &Foa = Fo.values; 10760e3ece09SJunchao Zhang auto Fm = Fd.numRows(); 10770e3ece09SJunchao Zhang 10780e3ece09SJunchao Zhang PetscIntKokkosView &F_NzLeft = mm->F_NzLeft; 10790e3ece09SJunchao Zhang PetscSF &bcastSF = mm->sf; 10800e3ece09SJunchao Zhang MatScalarKokkosView &rootBuf = mm->rootBuf; 10810e3ece09SJunchao Zhang MatScalarKokkosView &leafBuf = mm->leafBuf; 10820e3ece09SJunchao Zhang PetscInt teamSize = mm->F_TeamSize; 10830e3ece09SJunchao Zhang PetscInt vectorLength = mm->F_VectorLength; 10840e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->F_RowsPerTeam; 10850e3ece09SJunchao Zhang PetscInt workSets = (Fm + rowsPerTeam - 1) / rowsPerTeam; 10860e3ece09SJunchao Zhang 10870e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(bcastSF, MPIU_SCALAR, rootBuf.data(), leafBuf.data(), MPI_REPLACE)); 10880e3ece09SJunchao Zhang 10890e3ece09SJunchao Zhang // Update Fda and Foa with new data in leafBuf (as if it is Fa) 10900e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 10910e3ece09SJunchao Zhang Kokkos::TeamPolicy<>(workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 10920e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 10930e3ece09SJunchao Zhang PetscInt i = t.league_rank() * rowsPerTeam + k; // i-th row in F 10940e3ece09SJunchao Zhang if (i < Fm) { 10950e3ece09SJunchao Zhang PetscInt nzLeft = F_NzLeft(i); 10960e3ece09SJunchao Zhang PetscInt alen = Fdi(i + 1) - Fdi(i); 10970e3ece09SJunchao Zhang PetscInt blen = Foi(i + 1) - Foi(i); 10980e3ece09SJunchao Zhang PetscInt Fii = Fdi(i) + Foi(i); 10990e3ece09SJunchao Zhang 11000e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 11010e3ece09SJunchao Zhang PetscScalar val = leafBuf(Fii + j); 11020e3ece09SJunchao Zhang if (j < nzLeft) { // left 11030e3ece09SJunchao Zhang Foa(Foi(i) + j) = val; 11040e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { // diag 11050e3ece09SJunchao Zhang Fda(Fdi(i) + j - nzLeft) = val; 11060e3ece09SJunchao Zhang } else { // right 11070e3ece09SJunchao Zhang Foa(Foi(i) + j - alen) = val; 11080e3ece09SJunchao Zhang } 11090e3ece09SJunchao Zhang }); 11100e3ece09SJunchao Zhang } 11110e3ece09SJunchao Zhang }); 11120e3ece09SJunchao Zhang })); 11130e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 11140e3ece09SJunchao Zhang } 11150e3ece09SJunchao Zhang 11160e3ece09SJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AtB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AtB *mm) 11170e3ece09SJunchao Zhang { 11180e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 11190e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 11200e3ece09SJunchao Zhang KokkosCsrMatrix Adt, Aot, Ad, Ao, Bd, Bo; 11210e3ece09SJunchao Zhang PetscInt cstart, cend; 11220e3ece09SJunchao Zhang MPI_Comm comm; 11230e3ece09SJunchao Zhang 11240e3ece09SJunchao Zhang PetscFunctionBegin; 11250e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 11260e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->A, &Adt)); 11270e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->B, &Aot)); 11280e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 11290e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 11300e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 11310e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 11320e3ece09SJunchao Zhang 11330e3ece09SJunchao Zhang // TODO: add command line options to select spgemm algorithms 11340e3ece09SJunchao Zhang auto spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_DEFAULT; // default is TPL if enabled, otherwise KK 11350e3ece09SJunchao Zhang 11360e3ece09SJunchao Zhang // CUDA-10.2's spgemm has bugs. We prefer the SpGEMMreuse APIs introduced in cuda-11.4 11370e3ece09SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 11380e3ece09SJunchao Zhang #if PETSC_PKG_CUDA_VERSION_LT(11, 4, 0) 11390e3ece09SJunchao Zhang spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_KK; 1140f0e6e2d1SJunchao Zhang #endif 11410e3ece09SJunchao Zhang #endif 11420e3ece09SJunchao Zhang 11430e3ece09SJunchao Zhang PetscCallCXX(mm->kh1.create_spgemm_handle(spgemm_alg)); 11440e3ece09SJunchao Zhang PetscCallCXX(mm->kh2.create_spgemm_handle(spgemm_alg)); 11450e3ece09SJunchao Zhang PetscCallCXX(mm->kh3.create_spgemm_handle(spgemm_alg)); 11460e3ece09SJunchao Zhang PetscCallCXX(mm->kh4.create_spgemm_handle(spgemm_alg)); 11470e3ece09SJunchao Zhang 11480e3ece09SJunchao Zhang // Aot * (B's diag + B's off-diag) 11490e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh3, Aot, false, Bd, false, mm->C3)); 11500e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh4, Aot, false, Bo, false, mm->C4)); 11510e3ece09SJunchao Zhang // KK spgemm_symbolic() only populates the result's row map, but not its columns. 11520e3ece09SJunchao Zhang // TODO: Remove the fake spgemm_numeric() after KK fixed this problem. 11530e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Aot, false, Bd, false, mm->C3)); 11540e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Aot, false, Bo, false, mm->C4)); 11550e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 11560e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C3)); 11570e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C4)); 11580e3ece09SJunchao Zhang #endif 11590e3ece09SJunchao Zhang 11600e3ece09SJunchao Zhang // Reduce E (i.e., C3 and C4)'s rows to form F, and overlap the communication 1161*7b8d4ba6SJunchao Zhang PetscIntKokkosViewHost map_h(NoInit("map_h"), bmpi->B->cmap->n); 11620e3ece09SJunchao Zhang PetscCall(MatGetOwnershipRangeColumn(B, &cstart, &cend)); 11630e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceBegin(comm, mm->C3, mm->C4, cstart, cend, bmpi->garray, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 11640e3ece09SJunchao Zhang 11650e3ece09SJunchao Zhang // Adt * (B's diag + B's off-diag) 11660e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh1, Adt, false, Bd, false, mm->C1)); 11670e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 11680e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Adt, false, Bd, false, mm->C1)); 11690e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 11700e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 11710e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C1)); 11720e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C2_mid)); 11730e3ece09SJunchao Zhang #endif 11740e3ece09SJunchao Zhang 11750e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceEnd(comm, mm->C3, mm->C4, cstart, cend, bmpi->garray, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 11760e3ece09SJunchao Zhang 11770e3ece09SJunchao Zhang // Create C2, which shares a, i arrays with C2_mid, but with new column indices and potentially larger column size 1178*7b8d4ba6SJunchao Zhang MatColIdxKokkosView oldj = mm->C2_mid.graph.entries, newj(NoInit("j"), oldj.extent(0)); 11790e3ece09SJunchao Zhang PetscIntKokkosView map = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), map_h); 11800e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 11810e3ece09SJunchao Zhang oldj.extent(0), KOKKOS_LAMBDA(const PetscInt i) { newj(i) = map(oldj(i)); })); 11820e3ece09SJunchao Zhang PetscCallCXX(mm->C2 = KokkosCsrMatrix("C2", mm->C2_mid.numRows(), mm->n /*new column size*/, mm->C2_mid.nnz(), mm->C2_mid.values, mm->C2_mid.graph.row_map, newj)); 11830e3ece09SJunchao Zhang 11840e3ece09SJunchao Zhang // C = (C1+Fd, C2+Fo) 11850e3ece09SJunchao Zhang PetscCallCXX(mm->kh1.create_spadd_handle(true)); // C1, Fd are sorted 11860e3ece09SJunchao Zhang PetscCallCXX(mm->kh2.create_spadd_handle(true)); // C2, Fo are sorted 11870e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh1, mm->C1, mm->Fd, mm->Cd)); 11880e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh2, mm->C2, mm->Fo, mm->Co)); 11890e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->Fd, mm->Cd)); 11900e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->Fo, mm->Co)); 11910e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 11920e3ece09SJunchao Zhang } 11930e3ece09SJunchao Zhang 11940e3ece09SJunchao Zhang static PetscErrorCode MatProductNumeric_MPIAIJKokkos_AtB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AtB *mm) 11950e3ece09SJunchao Zhang { 11960e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 11970e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 11980e3ece09SJunchao Zhang KokkosCsrMatrix Adt, Aot, Bd, Bo; 11990e3ece09SJunchao Zhang MPI_Comm comm; 12000e3ece09SJunchao Zhang 12010e3ece09SJunchao Zhang PetscFunctionBegin; 12020e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 12030e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->A, &Adt)); 12040e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->B, &Aot)); 12050e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 12060e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 12070e3ece09SJunchao Zhang 12080e3ece09SJunchao Zhang // Aot * (B's diag + B's off-diag) 12090e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Aot, false, Bd, false, mm->C3)); 12100e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Aot, false, Bo, false, mm->C4)); 12110e3ece09SJunchao Zhang 12120e3ece09SJunchao Zhang // Reduce E (i.e., C3 and C4)'s rows to form F, and overlap the communication 12130e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceBegin(comm, mm->C3, mm->C4, 0, 0, NULL, NULL, MAT_REUSE_MATRIX, NULL, mm)); 12140e3ece09SJunchao Zhang 12150e3ece09SJunchao Zhang // Adt * (B's diag + B's off-diag) 12160e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Adt, false, Bd, false, mm->C1)); 12170e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 12180e3ece09SJunchao Zhang 12190e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceEnd(comm, mm->C3, mm->C4, 0, 0, NULL, NULL, MAT_REUSE_MATRIX, NULL, mm)); 12200e3ece09SJunchao Zhang 12210e3ece09SJunchao Zhang // C = (C1+Fd, C2+Fo) 12220e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->Fd, mm->Cd)); 12230e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->Fo, mm->Co)); 12240e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 12250e3ece09SJunchao Zhang } 1226f0e6e2d1SJunchao Zhang 1227076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AB - AB flavor of MatProductSymbolic_MPIAIJKokkos 1228076ba34aSJunchao Zhang 1229076ba34aSJunchao Zhang Input Parameters: 1230076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 1231076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 1232076ba34aSJunchao Zhang . B - an MPIAIJKOKKOS matrix 1233076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data when computing AB. Persist from symbolic to numeric operations. 1234076ba34aSJunchao Zhang */ 1235d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AB *mm) 1236d71ae5a4SJacob Faibussowitsch { 12370e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 12380e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 12390e3ece09SJunchao Zhang KokkosCsrMatrix Ad, Ao, Bd, Bo; 1240076ba34aSJunchao Zhang 1241076ba34aSJunchao Zhang PetscFunctionBegin; 12420e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 12430e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 12440e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 12450e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 12460e3ece09SJunchao Zhang 12470e3ece09SJunchao Zhang // TODO: add command line options to select spgemm algorithms 12480e3ece09SJunchao Zhang auto spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_DEFAULT; // default is TPL if enabled, otherwise KK 12490e3ece09SJunchao Zhang 12500e3ece09SJunchao Zhang // CUDA-10.2's spgemm has bugs. We prefer the SpGEMMreuse APIs introduced in cuda-11.4 12510e3ece09SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 12520e3ece09SJunchao Zhang #if PETSC_PKG_CUDA_VERSION_LT(11, 4, 0) 12530e3ece09SJunchao Zhang spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_KK; 12540e3ece09SJunchao Zhang #endif 1255f0e6e2d1SJunchao Zhang #endif 1256f0e6e2d1SJunchao Zhang 12570e3ece09SJunchao Zhang mm->kh1.create_spgemm_handle(spgemm_alg); 12580e3ece09SJunchao Zhang mm->kh2.create_spgemm_handle(spgemm_alg); 12590e3ece09SJunchao Zhang mm->kh3.create_spgemm_handle(spgemm_alg); 12600e3ece09SJunchao Zhang mm->kh4.create_spgemm_handle(spgemm_alg); 1261076ba34aSJunchao Zhang 12620e3ece09SJunchao Zhang // Bcast B's rows to form F, and overlap the communication 1263*7b8d4ba6SJunchao Zhang PetscIntKokkosViewHost map_h(NoInit("map_h"), bmpi->B->cmap->n); 12640e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastBegin(B, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1265076ba34aSJunchao Zhang 12660e3ece09SJunchao Zhang // A's diag * (B's diag + B's off-diag) 12670e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh1, Ad, false, Bd, false, mm->C1)); 12680e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); // C2 aliases with C2_mid, except with new column indices 12690e3ece09SJunchao Zhang // KK spgemm_symbolic() only populates the result's row map, but not its columns. 12700e3ece09SJunchao Zhang // TODO: Remove the fake spgemm_numeric() after KK fixed this problem. 12710e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Ad, false, Bd, false, mm->C1)); 12720e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); 12730e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 12740e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C1)); 12750e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C2_mid)); 12760e3ece09SJunchao Zhang #endif 1277076ba34aSJunchao Zhang 12780e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastEnd(B, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1279076ba34aSJunchao Zhang 12800e3ece09SJunchao Zhang // A's off-diag * (F's diag + F's off-diag) 12810e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 12820e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 12830e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 12840e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 12850e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 12860e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C3)); 12870e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C4)); 12880e3ece09SJunchao Zhang #endif 1289076ba34aSJunchao Zhang 12900e3ece09SJunchao Zhang // Create C2, which shares a, i arrays with C2_mid, but with new column indices and potentially larger column size 1291*7b8d4ba6SJunchao Zhang MatColIdxKokkosView oldj = mm->C2_mid.graph.entries, newj(NoInit("j"), oldj.extent(0)); 12920e3ece09SJunchao Zhang PetscIntKokkosView map = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), map_h); 12930e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 12940e3ece09SJunchao Zhang oldj.extent(0), KOKKOS_LAMBDA(const PetscInt i) { newj(i) = map(oldj(i)); })); 12950e3ece09SJunchao Zhang mm->C2 = KokkosCsrMatrix("C2", mm->C2_mid.numRows(), mm->n /*new column size*/, mm->C2_mid.nnz(), mm->C2_mid.values, mm->C2_mid.graph.row_map, newj); 12960e3ece09SJunchao Zhang 12970e3ece09SJunchao Zhang // C = (Cd, Co) = (C1+C3, C2+C4) 12980e3ece09SJunchao Zhang mm->kh1.create_spadd_handle(true); // C1, C3 are sorted 12990e3ece09SJunchao Zhang mm->kh2.create_spadd_handle(true); // C2, C4 are sorted 13000e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh1, mm->C1, mm->C3, mm->Cd)); 13010e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh2, mm->C2, mm->C4, mm->Co)); 13020e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->C3, mm->Cd)); 13030e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->C4, mm->Co)); 13043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1305076ba34aSJunchao Zhang } 1306076ba34aSJunchao Zhang 13070e3ece09SJunchao Zhang static PetscErrorCode MatProductNumeric_MPIAIJKokkos_AB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AB *mm) 1308d71ae5a4SJacob Faibussowitsch { 13090e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 13100e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 13110e3ece09SJunchao Zhang KokkosCsrMatrix Ad, Ao, Bd, Bo; 1312076ba34aSJunchao Zhang 1313076ba34aSJunchao Zhang PetscFunctionBegin; 13140e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 13150e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 13160e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 13170e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 1318076ba34aSJunchao Zhang 13190e3ece09SJunchao Zhang // Bcast B's rows to form F, and overlap the communication 13200e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastBegin(B, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1321076ba34aSJunchao Zhang 13220e3ece09SJunchao Zhang // A's diag * (B's diag + B's off-diag) 13230e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Ad, false, Bd, false, mm->C1)); 13240e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); 1325076ba34aSJunchao Zhang 13260e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastEnd(B, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1327076ba34aSJunchao Zhang 13280e3ece09SJunchao Zhang // A's off-diag * (F's diag + F's off-diag) 13290e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 13300e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 13310e3ece09SJunchao Zhang 13320e3ece09SJunchao Zhang // C = (Cd, Co) = (C1+C3, C2+C4) 13330e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->C3, mm->Cd)); 13340e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->C4, mm->Co)); 13353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1336076ba34aSJunchao Zhang } 1337076ba34aSJunchao Zhang 1338d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductNumeric_MPIAIJKokkos(Mat C) 1339d71ae5a4SJacob Faibussowitsch { 13400e3ece09SJunchao Zhang Mat_MPIAIJ *cmpi = static_cast<Mat_MPIAIJ *>(C->data); 13410e3ece09SJunchao Zhang Mat_Product *product; 13420e3ece09SJunchao Zhang MatProductData_MPIAIJKokkos *pdata; 1343076ba34aSJunchao Zhang MatProductType ptype; 13440e3ece09SJunchao Zhang Mat A, B; 1345076ba34aSJunchao Zhang 1346076ba34aSJunchao Zhang PetscFunctionBegin; 13470e3ece09SJunchao Zhang MatCheckProduct(C, 1); // make sure C is a product 13480e3ece09SJunchao Zhang product = C->product; 13490e3ece09SJunchao Zhang pdata = static_cast<MatProductData_MPIAIJKokkos *>(product->data); 1350076ba34aSJunchao Zhang ptype = product->type; 1351076ba34aSJunchao Zhang A = product->A; 1352076ba34aSJunchao Zhang B = product->B; 1353076ba34aSJunchao Zhang 13540e3ece09SJunchao Zhang // See if numeric has already been done in symbolic (e.g., user calls MatMatMult(A,B,MAT_INITIAL_MATRIX,..,C)). 13550e3ece09SJunchao Zhang // If yes, skip the numeric, but reset the flag so that next time when user calls MatMatMult(E,F,MAT_REUSE_MATRIX,..,C), 13560e3ece09SJunchao Zhang // we still do numeric. 13570e3ece09SJunchao Zhang if (pdata->reusesym) { // numeric reuses results from symbolic 13580e3ece09SJunchao Zhang pdata->reusesym = PETSC_FALSE; 13593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1360076ba34aSJunchao Zhang } 1361076ba34aSJunchao Zhang 1362076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 13630e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AB(product, A, B, pdata->mmAB)); 1364076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 13650e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AtB(product, A, B, pdata->mmAtB)); 13660e3ece09SJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { // BtAB, computed by Z = AB; C= BtZ 13670e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AB(product, A, B, pdata->mmAB)); 13680e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AtB(product, B, pdata->Z, pdata->mmAtB)); 1369076ba34aSJunchao Zhang } 13700e3ece09SJunchao Zhang 13710e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(cmpi->A)); // mark that A, B on device are modified 13720e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(cmpi->B)); 13733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1374076ba34aSJunchao Zhang } 1375076ba34aSJunchao Zhang 1376d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJKokkos(Mat C) 1377d71ae5a4SJacob Faibussowitsch { 1378076ba34aSJunchao Zhang Mat A, B; 13790e3ece09SJunchao Zhang Mat_Product *product; 1380076ba34aSJunchao Zhang MatProductType ptype; 13810e3ece09SJunchao Zhang MatProductData_MPIAIJKokkos *pdata; 1382076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 13830e3ece09SJunchao Zhang PetscInt m, n, M, N; 13840e3ece09SJunchao Zhang Mat Cd, Co; 13850e3ece09SJunchao Zhang MPI_Comm comm; 1386076ba34aSJunchao Zhang 1387076ba34aSJunchao Zhang PetscFunctionBegin; 13880e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 1389076ba34aSJunchao Zhang MatCheckProduct(C, 1); 13900e3ece09SJunchao Zhang product = C->product; 13910e3ece09SJunchao Zhang PetscCheck(!product->data, comm, PETSC_ERR_PLIB, "Product data not empty"); 1392076ba34aSJunchao Zhang ptype = product->type; 1393076ba34aSJunchao Zhang A = product->A; 1394076ba34aSJunchao Zhang B = product->B; 1395076ba34aSJunchao Zhang 1396076ba34aSJunchao Zhang switch (ptype) { 13979371c9d4SSatish Balay case MATPRODUCT_AB: 13989371c9d4SSatish Balay m = A->rmap->n; 13999371c9d4SSatish Balay n = B->cmap->n; 14009371c9d4SSatish Balay M = A->rmap->N; 14019371c9d4SSatish Balay N = B->cmap->N; 14029371c9d4SSatish Balay break; 14039371c9d4SSatish Balay case MATPRODUCT_AtB: 14049371c9d4SSatish Balay m = A->cmap->n; 14059371c9d4SSatish Balay n = B->cmap->n; 14069371c9d4SSatish Balay M = A->cmap->N; 14079371c9d4SSatish Balay N = B->cmap->N; 14089371c9d4SSatish Balay break; 14099371c9d4SSatish Balay case MATPRODUCT_PtAP: 14109371c9d4SSatish Balay m = B->cmap->n; 14119371c9d4SSatish Balay n = B->cmap->n; 14129371c9d4SSatish Balay M = B->cmap->N; 14139371c9d4SSatish Balay N = B->cmap->N; 14149371c9d4SSatish Balay break; /* BtAB */ 1415d71ae5a4SJacob Faibussowitsch default: 14160e3ece09SJunchao Zhang SETERRQ(comm, PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 1417076ba34aSJunchao Zhang } 1418076ba34aSJunchao Zhang 14199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 14209566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 14219566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 14229566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 1423076ba34aSJunchao Zhang 14240e3ece09SJunchao Zhang pdata = new MatProductData_MPIAIJKokkos(); 14250e3ece09SJunchao Zhang pdata->reusesym = product->api_user; 1426076ba34aSJunchao Zhang 1427076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 14280e3ece09SJunchao Zhang auto mmAB = new MatMatStruct_AB(); 14290e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AB(product, A, B, mmAB)); 14300e3ece09SJunchao Zhang mm = pdata->mmAB = mmAB; 1431076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 14320e3ece09SJunchao Zhang auto mmAtB = new MatMatStruct_AtB(); 14330e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AtB(product, A, B, mmAtB)); 14340e3ece09SJunchao Zhang mm = pdata->mmAtB = mmAtB; 14350e3ece09SJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { // C = BtAB, computed as Z = AB; C= BtZ 14360e3ece09SJunchao Zhang Mat Zd, Zo, Z; // Zd, Zo are owned by pdata->Z 14370e3ece09SJunchao Zhang 14380e3ece09SJunchao Zhang auto mmAB = new MatMatStruct_AB(); 14390e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AB(product, A, B, mmAB)); // Z stored as mmAB->{Cd, Co} 14400e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mmAB->Cd, &Zd)); 14410e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mmAB->Co, &Zo)); 14420e3ece09SJunchao Zhang pdata->mmAB = mmAB; 14430e3ece09SJunchao Zhang 14440e3ece09SJunchao Zhang m = A->rmap->n; // Z's layout 14450e3ece09SJunchao Zhang n = B->cmap->n; 14460e3ece09SJunchao Zhang M = A->rmap->N; 14470e3ece09SJunchao Zhang N = B->cmap->N; 14480e3ece09SJunchao Zhang PetscCall(MatCreate(comm, &Z)); 14490e3ece09SJunchao Zhang PetscCall(MatSetSizes(Z, m, n, M, N)); 14500e3ece09SJunchao Zhang PetscCall(PetscLayoutSetUp(Z->rmap)); 14510e3ece09SJunchao Zhang PetscCall(PetscLayoutSetUp(Z->cmap)); 14520e3ece09SJunchao Zhang PetscCall(MatSetType(Z, MATMPIAIJKOKKOS)); 14530e3ece09SJunchao Zhang PetscCall(MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Z, Zd, Zo, mmAB->garray)); 14540e3ece09SJunchao Zhang 14550e3ece09SJunchao Zhang auto mmAtB = new MatMatStruct_AtB(); 14560e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AtB(product, B, Z, mmAtB)); // final result C stored as mmAtB->{Cd, Co} 14570e3ece09SJunchao Zhang 14580e3ece09SJunchao Zhang pdata->Z = Z; // give ownership to pdata 14590e3ece09SJunchao Zhang mm = pdata->mmAtB = mmAtB; 1460076ba34aSJunchao Zhang } 14610e3ece09SJunchao Zhang 14620e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mm->Cd, &Cd)); 14630e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mm->Co, &Co)); 14640e3ece09SJunchao Zhang PetscCall(MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(C, Cd, Co, mm->garray)); 14650e3ece09SJunchao Zhang 14660e3ece09SJunchao Zhang C->product->data = pdata; 1467076ba34aSJunchao Zhang C->product->destroy = MatProductDataDestroy_MPIAIJKokkos; 1468076ba34aSJunchao Zhang C->ops->productnumeric = MatProductNumeric_MPIAIJKokkos; 14693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1470076ba34aSJunchao Zhang } 1471076ba34aSJunchao Zhang 1472d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJKokkos(Mat mat) 1473d71ae5a4SJacob Faibussowitsch { 1474076ba34aSJunchao Zhang Mat_Product *product = mat->product; 1475076ba34aSJunchao Zhang PetscBool match = PETSC_FALSE; 1476076ba34aSJunchao Zhang PetscBool usecpu = PETSC_FALSE; 1477076ba34aSJunchao Zhang 1478076ba34aSJunchao Zhang PetscFunctionBegin; 1479076ba34aSJunchao Zhang MatCheckProduct(mat, 1); 148048a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 1481076ba34aSJunchao Zhang if (match) { /* we can always fallback to the CPU if requested */ 1482076ba34aSJunchao Zhang switch (product->type) { 1483076ba34aSJunchao Zhang case MATPRODUCT_AB: 1484076ba34aSJunchao Zhang if (product->api_user) { 1485d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 14869566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 1487d0609cedSBarry Smith PetscOptionsEnd(); 1488076ba34aSJunchao Zhang } else { 1489d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 14909566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 1491d0609cedSBarry Smith PetscOptionsEnd(); 1492076ba34aSJunchao Zhang } 1493076ba34aSJunchao Zhang break; 1494076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1495076ba34aSJunchao Zhang if (product->api_user) { 1496d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 14979566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 1498d0609cedSBarry Smith PetscOptionsEnd(); 1499076ba34aSJunchao Zhang } else { 1500d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 15019566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 1502d0609cedSBarry Smith PetscOptionsEnd(); 1503076ba34aSJunchao Zhang } 1504076ba34aSJunchao Zhang break; 1505076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1506076ba34aSJunchao Zhang if (product->api_user) { 1507d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 15089566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 1509d0609cedSBarry Smith PetscOptionsEnd(); 1510076ba34aSJunchao Zhang } else { 1511d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 15129566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 1513d0609cedSBarry Smith PetscOptionsEnd(); 1514076ba34aSJunchao Zhang } 1515076ba34aSJunchao Zhang break; 1516d71ae5a4SJacob Faibussowitsch default: 1517d71ae5a4SJacob Faibussowitsch break; 1518076ba34aSJunchao Zhang } 1519076ba34aSJunchao Zhang match = (PetscBool)!usecpu; 1520076ba34aSJunchao Zhang } 1521076ba34aSJunchao Zhang if (match) { 1522076ba34aSJunchao Zhang switch (product->type) { 1523076ba34aSJunchao Zhang case MATPRODUCT_AB: 1524076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1525d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 1526d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJKokkos; 1527d71ae5a4SJacob Faibussowitsch break; 1528d71ae5a4SJacob Faibussowitsch default: 1529d71ae5a4SJacob Faibussowitsch break; 1530076ba34aSJunchao Zhang } 1531076ba34aSJunchao Zhang } 1532076ba34aSJunchao Zhang /* fallback to MPIAIJ ops */ 153348a46eb9SPierre Jolivet if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 15343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1535076ba34aSJunchao Zhang } 1536076ba34aSJunchao Zhang 1537d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetPreallocationCOO_MPIAIJKokkos(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 1538d71ae5a4SJacob Faibussowitsch { 1539394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 1540cbc6b225SStefano Zampini Mat_MPIAIJKokkos *mpikok; 154142550becSJunchao Zhang 154242550becSJunchao Zhang PetscFunctionBegin; 154330203840SJunchao Zhang PetscCall(MatSetPreallocationCOO_MPIAIJ(mat, coo_n, coo_i, coo_j)); /* mpiaij->A,B's type is set to seqaijkokkos */ 1544cbc6b225SStefano Zampini mat->preallocated = PETSC_TRUE; 15459566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 15469566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 15479566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat)); 1548cbc6b225SStefano Zampini mpikok = static_cast<Mat_MPIAIJKokkos *>(mpiaij->spptr); 1549cbc6b225SStefano Zampini delete mpikok; 1550394ed5ebSJunchao Zhang mpiaij->spptr = new Mat_MPIAIJKokkos(mpiaij); 15513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 155242550becSJunchao Zhang } 155342550becSJunchao Zhang 1554d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJKokkos(Mat mat, const PetscScalar v[], InsertMode imode) 1555d71ae5a4SJacob Faibussowitsch { 1556394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 155742550becSJunchao Zhang Mat_MPIAIJKokkos *mpikok = static_cast<Mat_MPIAIJKokkos *>(mpiaij->spptr); 155842550becSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 1559158ec288SJunchao Zhang PetscCount Annz = mpiaij->Annz, Annz2 = mpiaij->Annz2, Bnnz = mpiaij->Bnnz, Bnnz2 = mpiaij->Bnnz2; 156042550becSJunchao Zhang MatScalarKokkosView Aa, Ba; 1561394ed5ebSJunchao Zhang MatScalarKokkosView v1; 156242550becSJunchao Zhang MatScalarKokkosView &vsend = mpikok->sendbuf_d; 156342550becSJunchao Zhang const MatScalarKokkosView &v2 = mpikok->recvbuf_d; 1564158ec288SJunchao Zhang const PetscCountKokkosView &Ajmap1 = mpikok->Ajmap1_d, Ajmap2 = mpikok->Ajmap2_d, Aimap2 = mpikok->Aimap2_d; 1565158ec288SJunchao Zhang const PetscCountKokkosView &Bjmap1 = mpikok->Bjmap1_d, Bjmap2 = mpikok->Bjmap2_d, Bimap2 = mpikok->Bimap2_d; 1566394ed5ebSJunchao Zhang const PetscCountKokkosView &Aperm1 = mpikok->Aperm1_d, Aperm2 = mpikok->Aperm2_d, Bperm1 = mpikok->Bperm1_d, Bperm2 = mpikok->Bperm2_d; 1567394ed5ebSJunchao Zhang const PetscCountKokkosView &Cperm1 = mpikok->Cperm1_d; 156842550becSJunchao Zhang PetscMemType memtype; 156942550becSJunchao Zhang 157042550becSJunchao Zhang PetscFunctionBegin; 15719566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(v, &memtype)); /* Return PETSC_MEMTYPE_HOST when v is NULL */ 157242550becSJunchao Zhang if (PetscMemTypeHost(memtype)) { /* If user gave v[] in host, we need to copy it to device if any */ 1573394ed5ebSJunchao Zhang v1 = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), MatScalarKokkosViewHost((PetscScalar *)v, mpiaij->coo_n)); 157442550becSJunchao Zhang } else { 1575394ed5ebSJunchao Zhang v1 = MatScalarKokkosView((PetscScalar *)v, mpiaij->coo_n); /* Directly use v[]'s memory */ 157642550becSJunchao Zhang } 157742550becSJunchao Zhang 157842550becSJunchao Zhang if (imode == INSERT_VALUES) { 15799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosViewWrite(A, &Aa)); /* write matrix values */ 15809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosViewWrite(B, &Ba)); 1581394ed5ebSJunchao Zhang } else { 15829566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosView(A, &Aa)); /* read & write matrix values */ 15839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosView(B, &Ba)); 158442550becSJunchao Zhang } 158542550becSJunchao Zhang 158642550becSJunchao Zhang /* Pack entries to be sent to remote */ 15879371c9d4SSatish Balay Kokkos::parallel_for( 15889371c9d4SSatish Balay vsend.extent(0), KOKKOS_LAMBDA(const PetscCount i) { vsend(i) = v1(Cperm1(i)); }); 158942550becSJunchao Zhang 159042550becSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 15919566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(mpiaij->coo_sf, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, vsend.data(), PETSC_MEMTYPE_KOKKOS, v2.data(), MPI_REPLACE)); 1592158ec288SJunchao Zhang /* Add local entries to A and B in one kernel */ 15939371c9d4SSatish Balay Kokkos::parallel_for( 15949371c9d4SSatish Balay Annz + Bnnz, KOKKOS_LAMBDA(PetscCount i) { 1595158ec288SJunchao Zhang PetscScalar sum = 0.0; 1596158ec288SJunchao Zhang if (i < Annz) { 1597158ec288SJunchao Zhang for (PetscCount k = Ajmap1(i); k < Ajmap1(i + 1); k++) sum += v1(Aperm1(k)); 1598ac38520cSJunchao Zhang Aa(i) = (imode == INSERT_VALUES ? 0.0 : Aa(i)) + sum; 1599158ec288SJunchao Zhang } else { 1600158ec288SJunchao Zhang i -= Annz; 1601158ec288SJunchao Zhang for (PetscCount k = Bjmap1(i); k < Bjmap1(i + 1); k++) sum += v1(Bperm1(k)); 1602ac38520cSJunchao Zhang Ba(i) = (imode == INSERT_VALUES ? 0.0 : Ba(i)) + sum; 1603158ec288SJunchao Zhang } 1604158ec288SJunchao Zhang }); 16059566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(mpiaij->coo_sf, MPIU_SCALAR, vsend.data(), v2.data(), MPI_REPLACE)); 160642550becSJunchao Zhang 1607158ec288SJunchao Zhang /* Add received remote entries to A and B in one kernel */ 16089371c9d4SSatish Balay Kokkos::parallel_for( 16099371c9d4SSatish Balay Annz2 + Bnnz2, KOKKOS_LAMBDA(PetscCount i) { 1610158ec288SJunchao Zhang if (i < Annz2) { 1611158ec288SJunchao Zhang for (PetscCount k = Ajmap2(i); k < Ajmap2(i + 1); k++) Aa(Aimap2(i)) += v2(Aperm2(k)); 1612158ec288SJunchao Zhang } else { 1613158ec288SJunchao Zhang i -= Annz2; 1614158ec288SJunchao Zhang for (PetscCount k = Bjmap2(i); k < Bjmap2(i + 1); k++) Ba(Bimap2(i)) += v2(Bperm2(k)); 1615158ec288SJunchao Zhang } 1616158ec288SJunchao Zhang }); 161742550becSJunchao Zhang 1618394ed5ebSJunchao Zhang if (imode == INSERT_VALUES) { 16199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosViewWrite(A, &Aa)); /* Increase A & B's state etc. */ 16209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosViewWrite(B, &Ba)); 1621394ed5ebSJunchao Zhang } else { 16229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosView(A, &Aa)); 16239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosView(B, &Ba)); 1624394ed5ebSJunchao Zhang } 16253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 162642550becSJunchao Zhang } 162742550becSJunchao Zhang 1628d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPIAIJKokkos(Mat A) 1629d71ae5a4SJacob Faibussowitsch { 163042550becSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)A->data; 1631076ba34aSJunchao Zhang 1632076ba34aSJunchao Zhang PetscFunctionBegin; 16339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatMPIAIJSetPreallocation_C", NULL)); 16349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", NULL)); 16359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetPreallocationCOO_C", NULL)); 16369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetValuesCOO_C", NULL)); 163742550becSJunchao Zhang delete (Mat_MPIAIJKokkos *)mpiaij->spptr; 16389566063dSJacob Faibussowitsch PetscCall(MatDestroy_MPIAIJ(A)); 16393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1640076ba34aSJunchao Zhang } 1641076ba34aSJunchao Zhang 1642d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat A, MatType mtype, MatReuse reuse, Mat *newmat) 1643d71ae5a4SJacob Faibussowitsch { 16448c3ff71bSJunchao Zhang Mat B; 1645076ba34aSJunchao Zhang Mat_MPIAIJ *a; 16468c3ff71bSJunchao Zhang 16478c3ff71bSJunchao Zhang PetscFunctionBegin; 16488c3ff71bSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 16499566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, newmat)); 16508c3ff71bSJunchao Zhang } else if (reuse == MAT_REUSE_MATRIX) { 16519566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *newmat, SAME_NONZERO_PATTERN)); 16528c3ff71bSJunchao Zhang } 16538c3ff71bSJunchao Zhang B = *newmat; 16548c3ff71bSJunchao Zhang 16556f3d89d0SStefano Zampini B->boundtocpu = PETSC_FALSE; 16569566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16579566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECKOKKOS, &B->defaultvectype)); 16589566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJKOKKOS)); 16598c3ff71bSJunchao Zhang 1660076ba34aSJunchao Zhang a = static_cast<Mat_MPIAIJ *>(A->data); 16619566063dSJacob Faibussowitsch if (a->A) PetscCall(MatSetType(a->A, MATSEQAIJKOKKOS)); 16629566063dSJacob Faibussowitsch if (a->B) PetscCall(MatSetType(a->B, MATSEQAIJKOKKOS)); 16639566063dSJacob Faibussowitsch if (a->lvec) PetscCall(VecSetType(a->lvec, VECSEQKOKKOS)); 1664076ba34aSJunchao Zhang 16658c3ff71bSJunchao Zhang B->ops->assemblyend = MatAssemblyEnd_MPIAIJKokkos; 16668c3ff71bSJunchao Zhang B->ops->mult = MatMult_MPIAIJKokkos; 16678c3ff71bSJunchao Zhang B->ops->multadd = MatMultAdd_MPIAIJKokkos; 16688c3ff71bSJunchao Zhang B->ops->multtranspose = MatMultTranspose_MPIAIJKokkos; 1669076ba34aSJunchao Zhang B->ops->productsetfromoptions = MatProductSetFromOptions_MPIAIJKokkos; 1670076ba34aSJunchao Zhang B->ops->destroy = MatDestroy_MPIAIJKokkos; 16718c3ff71bSJunchao Zhang 16729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJKokkos)); 16739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJGetLocalMatMerge_C", MatMPIAIJGetLocalMatMerge_MPIAIJKokkos)); 16749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJKokkos)); 16759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJKokkos)); 16763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16778c3ff71bSJunchao Zhang } 16783f3ba80aSJunchao Zhang /*MC 167911a5261eSBarry Smith MATAIJKOKKOS - "mpiaijkokkos", a matrix type to be used for CSR sparse matrices with Kokkos 16808c3ff71bSJunchao Zhang 16813f3ba80aSJunchao Zhang A matrix type type using Kokkos-Kernels CrsMatrix type for portability across different device types 16823f3ba80aSJunchao Zhang 16832ef1f0ffSBarry Smith Options Database Key: 16842ef1f0ffSBarry Smith . -mat_type aijkokkos - sets the matrix type to `MATAIJKOKKOS` 16853f3ba80aSJunchao Zhang 16863f3ba80aSJunchao Zhang Level: beginner 16873f3ba80aSJunchao Zhang 16882ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MatCreateAIJKokkos()`, `MATSEQAIJKOKKOS`, `MATSEQAIJ`, `MATMPIAIJ` 16893f3ba80aSJunchao Zhang M*/ 1690d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJKokkos(Mat A) 1691d71ae5a4SJacob Faibussowitsch { 16928c3ff71bSJunchao Zhang PetscFunctionBegin; 16939566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 16949566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIAIJ(A)); 16959566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIAIJ_MPIAIJKokkos(A, MATMPIAIJKOKKOS, MAT_INPLACE_MATRIX, &A)); 16963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16978c3ff71bSJunchao Zhang } 16988c3ff71bSJunchao Zhang 16998c3ff71bSJunchao Zhang /*@C 170011a5261eSBarry Smith MatCreateAIJKokkos - Creates a sparse matrix in `MATAIJKOKOS` (compressed row) format 17018c3ff71bSJunchao Zhang (the default parallel PETSc format). This matrix will ultimately pushed down 170220f4b53cSBarry Smith to Kokkos for calculations. 17038c3ff71bSJunchao Zhang 17048c3ff71bSJunchao Zhang Collective 17058c3ff71bSJunchao Zhang 17068c3ff71bSJunchao Zhang Input Parameters: 170711a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF` 170820f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 170920f4b53cSBarry Smith This value should be the same as the local size used in creating the 171020f4b53cSBarry Smith y vector for the matrix-vector product y = Ax. 171120f4b53cSBarry Smith . n - This value should be the same as the local size used in creating the 171220f4b53cSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 171320f4b53cSBarry Smith calculated if N is given) For square matrices n is almost always `m`. 171420f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 171520f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 171620f4b53cSBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 171720f4b53cSBarry Smith (same value is used for all local rows) 171820f4b53cSBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 171920f4b53cSBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 172020f4b53cSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 172120f4b53cSBarry Smith The size of this array is equal to the number of local rows, i.e `m`. 172220f4b53cSBarry Smith For matrices you plan to factor you must leave room for the diagonal entry and 172320f4b53cSBarry Smith put in the entry even if it is zero. 172420f4b53cSBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 172520f4b53cSBarry Smith submatrix (same value is used for all local rows). 172620f4b53cSBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 172720f4b53cSBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 172820f4b53cSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 172920f4b53cSBarry Smith structure. The size of this array is equal to the number 173020f4b53cSBarry Smith of local rows, i.e `m`. 17318c3ff71bSJunchao Zhang 17328c3ff71bSJunchao Zhang Output Parameter: 17338c3ff71bSJunchao Zhang . A - the matrix 17348c3ff71bSJunchao Zhang 17352ef1f0ffSBarry Smith Level: intermediate 17362ef1f0ffSBarry Smith 17372ef1f0ffSBarry Smith Notes: 173811a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 17398c3ff71bSJunchao Zhang MatXXXXSetPreallocation() paradigm instead of this routine directly. 174011a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 17418c3ff71bSJunchao Zhang 1742667f096bSBarry Smith The AIJ format, also called compressed row storage), is fully compatible with standard Fortran 17438c3ff71bSJunchao Zhang storage. That is, the stored row and column indices can begin at 17442ef1f0ffSBarry Smith either one (as in Fortran) or zero. 17458c3ff71bSJunchao Zhang 17462ef1f0ffSBarry Smith .seealso: [](chapter_matrices), `Mat`, `MATAIJKOKOS`, `MATSEQAIJKOKOS`, `MATMPIAIJKOKOS`, `MatCreate()`, `MatCreateAIJ()`, `MatSetValues()`, 17472ef1f0ffSBarry Smith `MatSeqAIJSetColumnIndices()`, `MatCreateSeqAIJWithArrays()`, `MatCreateAIJ()`, `MATMPIAIJKOKKOS`, `MATAIJKOKKOS` 17488c3ff71bSJunchao Zhang @*/ 1749d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJKokkos(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 1750d71ae5a4SJacob Faibussowitsch { 17518c3ff71bSJunchao Zhang PetscMPIInt size; 17528c3ff71bSJunchao Zhang 17538c3ff71bSJunchao Zhang PetscFunctionBegin; 17549566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 17559566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 17569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17578c3ff71bSJunchao Zhang if (size > 1) { 17589566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJKOKKOS)); 17599566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 17608c3ff71bSJunchao Zhang } else { 17619566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJKOKKOS)); 17629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 17638c3ff71bSJunchao Zhang } 17643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17658c3ff71bSJunchao Zhang } 1766