1d326c3f1SJunchao Zhang #include <petsc_kokkos.hpp> 211d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 3f0e6e2d1SJunchao Zhang #include <petscpkg_version.h> 442550becSJunchao Zhang #include <petsc/private/sfimpl.h> 5*92896123SJunchao Zhang #include <petsc/private/kokkosimpl.hpp> 62c4ab24aSJunchao Zhang #include <../src/mat/impls/aij/seq/kokkos/aijkok.hpp> 78c3ff71bSJunchao Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8076ba34aSJunchao Zhang #include <KokkosSparse_spadd.hpp> 90e3ece09SJunchao Zhang #include <KokkosSparse_spgemm.hpp> 1011d22bbfSJunchao Zhang 1166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIAIJKokkos(Mat A, MatAssemblyType mode) 12d71ae5a4SJacob Faibussowitsch { 1330203840SJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)A->data; 148c3ff71bSJunchao Zhang 158c3ff71bSJunchao Zhang PetscFunctionBegin; 169566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd_MPIAIJ(A, mode)); 1730203840SJunchao Zhang /* E.g., MatCreateSubMatrix() calls MatCreateMPIAIJWithSeqAIJ(comm,A,B,..), which creates Bnew of SEQAIJ and destroys B of SEQAIJKOKKOS. 1830203840SJunchao Zhang Thus we finalize A/B/lvec's type in MatAssemblyEnd() to handle various cases. 1930203840SJunchao Zhang */ 2030203840SJunchao Zhang if (mode == MAT_FINAL_ASSEMBLY) { 21*92896123SJunchao Zhang PetscScalarKokkosView v; 22*92896123SJunchao Zhang 2330203840SJunchao Zhang PetscCall(MatSetType(mpiaij->A, MATSEQAIJKOKKOS)); 2430203840SJunchao Zhang PetscCall(MatSetType(mpiaij->B, MATSEQAIJKOKKOS)); 25*92896123SJunchao Zhang PetscCall(VecSetType(mpiaij->lvec, VECSEQKOKKOS)); // lvec is init'ed on host, without copying to device 26*92896123SJunchao Zhang PetscCall(VecGetKokkosViewWrite(mpiaij->lvec, &v)); // mark lvec updated on device, as we never need to init lvec on device 27*92896123SJunchao Zhang PetscCall(VecRestoreKokkosViewWrite(mpiaij->lvec, &v)); 2830203840SJunchao Zhang } 293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 308c3ff71bSJunchao Zhang } 318c3ff71bSJunchao Zhang 3266976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJKokkos(Mat mat, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 33d71ae5a4SJacob Faibussowitsch { 348c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 358c3ff71bSJunchao Zhang 368c3ff71bSJunchao Zhang PetscFunctionBegin; 37913a874dSJunchao Zhang // If mat was set to use the "set values with a hash table" mechanism, discard it and restore the cached ops 38913a874dSJunchao Zhang if (mat->hash_active) { 39913a874dSJunchao Zhang mat->ops[0] = mpiaij->cops; 40913a874dSJunchao Zhang mat->hash_active = PETSC_FALSE; 41913a874dSJunchao Zhang } 42913a874dSJunchao Zhang 439566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 449566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 456a29ce69SStefano Zampini #if defined(PETSC_USE_DEBUG) 468c3ff71bSJunchao Zhang if (d_nnz) { 476a29ce69SStefano Zampini PetscInt i; 48ad540459SPierre Jolivet for (i = 0; i < mat->rmap->n; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 498c3ff71bSJunchao Zhang } 508c3ff71bSJunchao Zhang if (o_nnz) { 516a29ce69SStefano Zampini PetscInt i; 52ad540459SPierre Jolivet for (i = 0; i < mat->rmap->n; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 538c3ff71bSJunchao Zhang } 546a29ce69SStefano Zampini #endif 556a29ce69SStefano Zampini #if defined(PETSC_USE_CTABLE) 56eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 576a29ce69SStefano Zampini #else 589566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 596a29ce69SStefano Zampini #endif 609566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 629566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 636a29ce69SStefano Zampini /* Because the B will have been resized we simply destroy it and create a new one each time */ 649566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mpiaij->B)); 656a29ce69SStefano Zampini 666a29ce69SStefano Zampini if (!mpiaij->A) { 679566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &mpiaij->A)); 689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mpiaij->A, mat->rmap->n, mat->cmap->n, mat->rmap->n, mat->cmap->n)); 696a29ce69SStefano Zampini } 706a29ce69SStefano Zampini if (!mpiaij->B) { 716a29ce69SStefano Zampini PetscMPIInt size; 729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)mat), &size)); 739566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &mpiaij->B)); 749566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mpiaij->B, mat->rmap->n, size > 1 ? mat->cmap->N : 0, mat->rmap->n, size > 1 ? mat->cmap->N : 0)); 758c3ff71bSJunchao Zhang } 769566063dSJacob Faibussowitsch PetscCall(MatSetType(mpiaij->A, MATSEQAIJKOKKOS)); 779566063dSJacob Faibussowitsch PetscCall(MatSetType(mpiaij->B, MATSEQAIJKOKKOS)); 789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(mpiaij->A, d_nz, d_nnz)); 799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(mpiaij->B, o_nz, o_nnz)); 808c3ff71bSJunchao Zhang mat->preallocated = PETSC_TRUE; 813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 828c3ff71bSJunchao Zhang } 838c3ff71bSJunchao Zhang 8466976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJKokkos(Mat mat, Vec xx, Vec yy) 85d71ae5a4SJacob Faibussowitsch { 868c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 878c3ff71bSJunchao Zhang PetscInt nt; 888c3ff71bSJunchao Zhang 898c3ff71bSJunchao Zhang PetscFunctionBegin; 909566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 9108401ef6SPierre Jolivet PetscCheck(nt == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->cmap->n, nt); 929566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 939566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->mult)(mpiaij->A, xx, yy)); 949566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 959566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multadd)(mpiaij->B, mpiaij->lvec, yy, yy)); 963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 978c3ff71bSJunchao Zhang } 988c3ff71bSJunchao Zhang 9966976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJKokkos(Mat mat, Vec xx, Vec yy, Vec zz) 100d71ae5a4SJacob Faibussowitsch { 1018c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 1028c3ff71bSJunchao Zhang PetscInt nt; 1038c3ff71bSJunchao Zhang 1048c3ff71bSJunchao Zhang PetscFunctionBegin; 1059566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 10608401ef6SPierre Jolivet PetscCheck(nt == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->cmap->n, nt); 1079566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1089566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->multadd)(mpiaij->A, xx, yy, zz)); 1099566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1109566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multadd)(mpiaij->B, mpiaij->lvec, zz, zz)); 1113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1128c3ff71bSJunchao Zhang } 1138c3ff71bSJunchao Zhang 11466976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJKokkos(Mat mat, Vec xx, Vec yy) 115d71ae5a4SJacob Faibussowitsch { 1168c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 1178c3ff71bSJunchao Zhang PetscInt nt; 1188c3ff71bSJunchao Zhang 1198c3ff71bSJunchao Zhang PetscFunctionBegin; 1209566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12108401ef6SPierre Jolivet PetscCheck(nt == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->rmap->n, nt); 1229566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multtranspose)(mpiaij->B, xx, mpiaij->lvec)); 1239566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->multtranspose)(mpiaij->A, xx, yy)); 1249566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, mpiaij->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 1259566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, mpiaij->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 1263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1278c3ff71bSJunchao Zhang } 1288c3ff71bSJunchao Zhang 129076ba34aSJunchao Zhang /* Merge the "A, B" matrices of mat into a matrix C. mat's type is MPIAIJKOKKOS. C's type is MATSEQAIJKOKKOS. 130076ba34aSJunchao Zhang A is put before B. C's size would be A->rmap->n by (A->cmap->n + B->cmap->n). 131076ba34aSJunchao Zhang C still uses local column ids. Their corresponding global column ids are returned in glob. 132076ba34aSJunchao Zhang */ 13366976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIAIJGetLocalMatMerge_MPIAIJKokkos(Mat mat, MatReuse reuse, IS *glob, Mat *C) 134d71ae5a4SJacob Faibussowitsch { 135076ba34aSJunchao Zhang Mat Ad, Ao; 136076ba34aSJunchao Zhang const PetscInt *cmap; 137076ba34aSJunchao Zhang 138076ba34aSJunchao Zhang PetscFunctionBegin; 1399566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(mat, &Ad, &Ao, &cmap)); 1409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosMergeMats(Ad, Ao, reuse, C)); 141076ba34aSJunchao Zhang if (glob) { 142076ba34aSJunchao Zhang PetscInt cst, i, dn, on, *gidx; 1439566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, NULL, &dn)); 1449566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 1459566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cst, NULL)); 1469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 147076ba34aSJunchao Zhang for (i = 0; i < dn; i++) gidx[i] = cst + i; 148076ba34aSJunchao Zhang for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 1499566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 150076ba34aSJunchao Zhang } 1513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 152076ba34aSJunchao Zhang } 153076ba34aSJunchao Zhang 1540e3ece09SJunchao Zhang /* Structs used in matrix products of type C=AB, C=A^tB and C=B^tAB */ 155076ba34aSJunchao Zhang struct MatMatStruct { 1560e3ece09SJunchao Zhang PetscInt n, *garray; // C's garray and its size. 1570e3ece09SJunchao Zhang KokkosCsrMatrix Cd, Co; // C is in split form matrices (all in local column indcies) 1580e3ece09SJunchao Zhang KokkosCsrMatrix C1, C2, C3, C4; // intermediate mat products 1590e3ece09SJunchao Zhang KokkosCsrMatrix C2_mid, C4_mid; // alias of C2, C4; share their a[], i[], but with different j[] (hence column size) 1600e3ece09SJunchao Zhang PetscIntKokkosView E_NzLeft; 1610e3ece09SJunchao Zhang PetscSF sf = nullptr; // SF to bcast or reduce matrices E to F 1620e3ece09SJunchao Zhang MatScalarKokkosView rootBuf, leafBuf; 1630e3ece09SJunchao Zhang KokkosCsrMatrix Fd, Fo; // F in split form 1640e3ece09SJunchao Zhang 1650e3ece09SJunchao Zhang KernelHandle kh1; // compute C1, add C1+C3 or C1+Fd 1660e3ece09SJunchao Zhang KernelHandle kh2; // compute C2, add C2+C4 or C2+Fo 1670e3ece09SJunchao Zhang KernelHandle kh3; // compute C3 1680e3ece09SJunchao Zhang KernelHandle kh4; // compute C4 1690e3ece09SJunchao Zhang 170aaa8cc7dSPierre Jolivet PetscInt E_TeamSize; // kernel launching parameters in merging E or splitting F 1710e3ece09SJunchao Zhang PetscInt E_VectorLength; 1720e3ece09SJunchao Zhang PetscInt E_RowsPerTeam; 1730e3ece09SJunchao Zhang PetscInt F_TeamSize; 1740e3ece09SJunchao Zhang PetscInt F_VectorLength; 1750e3ece09SJunchao Zhang PetscInt F_RowsPerTeam; 176076ba34aSJunchao Zhang 177d71ae5a4SJacob Faibussowitsch ~MatMatStruct() 178d71ae5a4SJacob Faibussowitsch { 1793ba16761SJacob Faibussowitsch PetscFunctionBegin; 1803ba16761SJacob Faibussowitsch PetscCallAbort(PETSC_COMM_SELF, PetscSFDestroy(&sf)); 1813ba16761SJacob Faibussowitsch PetscFunctionReturnVoid(); 182076ba34aSJunchao Zhang } 183076ba34aSJunchao Zhang }; 184076ba34aSJunchao Zhang 185076ba34aSJunchao Zhang struct MatMatStruct_AB : public MatMatStruct { 1860e3ece09SJunchao Zhang PetscIntKokkosView F_NzLeft; // plans to split F (in leafbuf) into Fd, Fo 1870e3ece09SJunchao Zhang PetscIntKokkosView irootloc; // plans to put E (i.e., Bd, Bo) into rootBuf 1880e3ece09SJunchao Zhang PetscIntKokkosView rowoffset; 189076ba34aSJunchao Zhang }; 190076ba34aSJunchao Zhang 191076ba34aSJunchao Zhang struct MatMatStruct_AtB : public MatMatStruct { 1920e3ece09SJunchao Zhang MatColIdxKokkosView Fdjmap; // plans to reduce data in rootBuf to Fd, Fo 1930e3ece09SJunchao Zhang MatColIdxKokkosView Fdjperm; 1940e3ece09SJunchao Zhang MatColIdxKokkosView Fojmap; 1950e3ece09SJunchao Zhang MatColIdxKokkosView Fojperm; 196076ba34aSJunchao Zhang }; 197076ba34aSJunchao Zhang 1989371c9d4SSatish Balay struct MatProductData_MPIAIJKokkos { 1993ba16761SJacob Faibussowitsch MatMatStruct_AB *mmAB = nullptr; 2003ba16761SJacob Faibussowitsch MatMatStruct_AtB *mmAtB = nullptr; 2013ba16761SJacob Faibussowitsch PetscBool reusesym = PETSC_FALSE; 2020e3ece09SJunchao Zhang Mat Z = nullptr; // store Z=AB in computing BtAB 203076ba34aSJunchao Zhang 204d71ae5a4SJacob Faibussowitsch ~MatProductData_MPIAIJKokkos() 205d71ae5a4SJacob Faibussowitsch { 206076ba34aSJunchao Zhang delete mmAB; 207076ba34aSJunchao Zhang delete mmAtB; 2080e3ece09SJunchao Zhang PetscCallAbort(PETSC_COMM_SELF, MatDestroy(&Z)); 209076ba34aSJunchao Zhang } 210076ba34aSJunchao Zhang }; 211076ba34aSJunchao Zhang 212d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductDataDestroy_MPIAIJKokkos(void *data) 213d71ae5a4SJacob Faibussowitsch { 214076ba34aSJunchao Zhang PetscFunctionBegin; 2159566063dSJacob Faibussowitsch PetscCallCXX(delete static_cast<MatProductData_MPIAIJKokkos *>(data)); 2163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 217076ba34aSJunchao Zhang } 218076ba34aSJunchao Zhang 219076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices - Set the diag and offdiag matrices of a MATMPIAIJKOKKOS matrix. 220076ba34aSJunchao Zhang It is similar to MatCreateMPIAIJWithSplitArrays. 221076ba34aSJunchao Zhang 222076ba34aSJunchao Zhang Input Parameters: 223076ba34aSJunchao Zhang + mat - the MATMPIAIJKOKKOS matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set 224076ba34aSJunchao Zhang . A - the diag matrix using local col ids 225076ba34aSJunchao Zhang - B - the offdiag matrix using global col ids 226076ba34aSJunchao Zhang 2272fe279fdSBarry Smith Output Parameter: 228076ba34aSJunchao Zhang . mat - the updated MATMPIAIJKOKKOS matrix 229076ba34aSJunchao Zhang */ 2300e3ece09SJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Mat mat, Mat A, Mat B, PetscInt *garray) 231d71ae5a4SJacob Faibussowitsch { 232076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 233076ba34aSJunchao Zhang PetscInt m, n, M, N, Am, An, Bm, Bn; 234076ba34aSJunchao Zhang 235076ba34aSJunchao Zhang PetscFunctionBegin; 2369566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 2379566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 2389566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &Am, &An)); 2399566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &Bm, &Bn)); 240076ba34aSJunchao Zhang 241aed4548fSBarry Smith PetscCheck(m == Am && m == Bm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of rows do not match"); 24208401ef6SPierre Jolivet PetscCheck(n == An, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of columns do not match"); 2430e3ece09SJunchao Zhang // PetscCheck(N == Bn, PETSC_COMM_SELF, PETSC_ERR_PLIB, "global number of columns do not match"); 24408401ef6SPierre Jolivet PetscCheck(!mpiaij->A && !mpiaij->B, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A, B of the MPIAIJ matrix are not empty"); 245076ba34aSJunchao Zhang mpiaij->A = A; 246076ba34aSJunchao Zhang mpiaij->B = B; 2470e3ece09SJunchao Zhang mpiaij->garray = garray; 248076ba34aSJunchao Zhang 249076ba34aSJunchao Zhang mat->preallocated = PETSC_TRUE; 250076ba34aSJunchao Zhang mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 251076ba34aSJunchao Zhang 2529566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 2539566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 254076ba34aSJunchao Zhang /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 255076ba34aSJunchao Zhang also gets mpiaij->B compacted, with its col ids and size reduced 256076ba34aSJunchao Zhang */ 2579566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 2589566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 2599566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 261076ba34aSJunchao Zhang } 262076ba34aSJunchao Zhang 2630e3ece09SJunchao Zhang // Adapted from Kokkos-Kernels spmv_launch_parameters(), to get parameters in Kokkos nested loops which we used to merge or 2640e3ece09SJunchao Zhang // split csr matrices. The rule is to have "vector_length * team_size" be around 256 on GPUs (e.g., for a CUDA thread block) 2650e3ece09SJunchao Zhang template <class ExecutionSpace> 2660e3ece09SJunchao Zhang static PetscErrorCode MatMergeGetLaunchParameters(PetscInt numRows, PetscInt nnz, PetscInt rows_per_thread, PetscInt &team_size, PetscInt &vector_length, PetscInt &rows_per_team) 267d71ae5a4SJacob Faibussowitsch { 2680e3ece09SJunchao Zhang Kokkos::TeamPolicy<ExecutionSpace> teamPolicy(128, Kokkos::AUTO); 269076ba34aSJunchao Zhang 270076ba34aSJunchao Zhang PetscFunctionBegin; 2710e3ece09SJunchao Zhang PetscInt nnz_per_row = numRows ? (nnz / numRows) : 0; // we might meet empty matrices 272076ba34aSJunchao Zhang 2730e3ece09SJunchao Zhang if (nnz_per_row < 1) nnz_per_row = 1; 274076ba34aSJunchao Zhang 2750e3ece09SJunchao Zhang int max_vector_length = teamPolicy.vector_length_max(); 276076ba34aSJunchao Zhang 2770e3ece09SJunchao Zhang if (vector_length < 1) { 2780e3ece09SJunchao Zhang vector_length = 1; 2790e3ece09SJunchao Zhang while (vector_length < max_vector_length && vector_length * 6 < nnz_per_row) vector_length *= 2; 280076ba34aSJunchao Zhang } 281076ba34aSJunchao Zhang 2820e3ece09SJunchao Zhang // Determine rows per thread 2830e3ece09SJunchao Zhang if (rows_per_thread < 1) { 2840e3ece09SJunchao Zhang if (KokkosKernels::Impl::kk_is_gpu_exec_space<ExecutionSpace>()) rows_per_thread = 1; 2850e3ece09SJunchao Zhang else { 2860e3ece09SJunchao Zhang if (nnz_per_row < 20 && nnz > 5000000) { 2870e3ece09SJunchao Zhang rows_per_thread = 256; 2880e3ece09SJunchao Zhang } else rows_per_thread = 64; 289076ba34aSJunchao Zhang } 290076ba34aSJunchao Zhang } 291076ba34aSJunchao Zhang 2920e3ece09SJunchao Zhang if (team_size < 1) { 2930e3ece09SJunchao Zhang if (KokkosKernels::Impl::kk_is_gpu_exec_space<ExecutionSpace>()) { 2940e3ece09SJunchao Zhang team_size = 256 / vector_length; 295076ba34aSJunchao Zhang } else { 2960e3ece09SJunchao Zhang team_size = 1; 2970e3ece09SJunchao Zhang } 298076ba34aSJunchao Zhang } 299076ba34aSJunchao Zhang 3000e3ece09SJunchao Zhang rows_per_team = rows_per_thread * team_size; 301076ba34aSJunchao Zhang 3020e3ece09SJunchao Zhang if (rows_per_team < 0) { 3030e3ece09SJunchao Zhang PetscInt nnz_per_team = 4096; 3040e3ece09SJunchao Zhang PetscInt conc = ExecutionSpace().concurrency(); 3050e3ece09SJunchao Zhang while ((conc * nnz_per_team * 4 > nnz) && (nnz_per_team > 256)) nnz_per_team /= 2; 3060e3ece09SJunchao Zhang rows_per_team = (nnz_per_team + nnz_per_row - 1) / nnz_per_row; 3070e3ece09SJunchao Zhang } 3083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 309076ba34aSJunchao Zhang } 310076ba34aSJunchao Zhang 3110e3ece09SJunchao Zhang /* 3120e3ece09SJunchao Zhang Reduce two sets of global indices into local ones 313076ba34aSJunchao Zhang 314076ba34aSJunchao Zhang Input Parameters: 3150e3ece09SJunchao Zhang + n1 - size of garray1[], the first set 3160e3ece09SJunchao Zhang . garray1[n1] - a sorted global index array (without duplicates) 3170e3ece09SJunchao Zhang . m - size of indices[], the second set 3180e3ece09SJunchao Zhang - indices[m] - a unsorted global index array (might have duplicates), which will be updated on output into local ones 319076ba34aSJunchao Zhang 320076ba34aSJunchao Zhang Output Parameters: 3210e3ece09SJunchao Zhang + n2 - size of garray2[], the merged set, which combines garray1[] and indices[] 3220e3ece09SJunchao Zhang . garray2[n2] - allocated by callee using PetscMalloc1(). Contains sorted unique global indices (without duplicates). Caller needs to free it. 3230e3ece09SJunchao Zhang . map[n1] - allocated by caller. It gives garray1[i] = garray2[map[i]] 3240e3ece09SJunchao Zhang - indices[m] - on output, global indices in this array are rewritten with local ones, i.e, indices_input[i] = garray2[indices_output[i]] 325076ba34aSJunchao Zhang 3260e3ece09SJunchao Zhang Example, say 3270e3ece09SJunchao Zhang n1 = 5 3280e3ece09SJunchao Zhang garray1[5] = {1, 4, 7, 8, 10} 3290e3ece09SJunchao Zhang m = 4 3300e3ece09SJunchao Zhang indices[4] = {2, 4, 8, 9} 33111a5261eSBarry Smith 3320e3ece09SJunchao Zhang Combining them together, we have 7 global indices in garray2[] 3330e3ece09SJunchao Zhang n2 = 7 3340e3ece09SJunchao Zhang garray2[7] = {1, 2, 4, 7, 8, 9, 10} 3350e3ece09SJunchao Zhang 3360e3ece09SJunchao Zhang And we have map[] to connect "garray1[i] = garray2[map[i]], i=[0,n1)" 3370e3ece09SJunchao Zhang map[5] = {0, 2, 3, 4, 6} 3380e3ece09SJunchao Zhang 3390e3ece09SJunchao Zhang On output, indices[] is updated with local indices 3400e3ece09SJunchao Zhang indices[4] = {1, 2, 4, 5} 341076ba34aSJunchao Zhang */ 3420e3ece09SJunchao Zhang static PetscErrorCode ReduceTwoSetsOfGlobalIndices(PetscInt n1, const PetscInt *garray1, PetscInt m, PetscInt *indices, PetscInt *n2_, PetscInt **garray2_, PetscInt *map) 343d71ae5a4SJacob Faibussowitsch { 3440e3ece09SJunchao Zhang PetscHMapI g2l = nullptr; 3450e3ece09SJunchao Zhang PetscHashIter iter; 3460e3ece09SJunchao Zhang PetscInt tot, key, val; // total unique global indices. key is global id; val is local id 3470e3ece09SJunchao Zhang PetscInt n2, *garray2; 348076ba34aSJunchao Zhang 349076ba34aSJunchao Zhang PetscFunctionBegin; 3500e3ece09SJunchao Zhang tot = 0; 3510e3ece09SJunchao Zhang PetscCall(PetscHMapICreateWithSize(n1, &g2l)); 3520e3ece09SJunchao Zhang for (PetscInt i = 0; i < m; i++) { // insert those in indices[] 3530e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, indices[i], -1, &val)); // if not exist, val is set with -1 3540e3ece09SJunchao Zhang if (val < 0) PetscCall(PetscHMapISet(g2l, indices[i], tot++)); // val < 0 means gid is not in the hash table yet 355076ba34aSJunchao Zhang } 356076ba34aSJunchao Zhang 3570e3ece09SJunchao Zhang for (PetscInt i = 0; i < n1; i++) { // insert those in garray1[] 3580e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, garray1[i], -1, &val)); 3590e3ece09SJunchao Zhang if (val < 0) PetscCall(PetscHMapISet(g2l, garray1[i], tot++)); 360076ba34aSJunchao Zhang } 361076ba34aSJunchao Zhang 3620e3ece09SJunchao Zhang // Pull out (unique) globals in the hash table and put them in garray2[] 3630e3ece09SJunchao Zhang n2 = tot; 3640e3ece09SJunchao Zhang PetscCall(PetscMalloc1(n2, &garray2)); 3650e3ece09SJunchao Zhang tot = 0; 3660e3ece09SJunchao Zhang PetscHashIterBegin(g2l, iter); 3670e3ece09SJunchao Zhang while (!PetscHashIterAtEnd(g2l, iter)) { 3680e3ece09SJunchao Zhang PetscHashIterGetKey(g2l, iter, key); 3690e3ece09SJunchao Zhang PetscHashIterNext(g2l, iter); 3700e3ece09SJunchao Zhang garray2[tot++] = key; 371076ba34aSJunchao Zhang } 372076ba34aSJunchao Zhang 3730e3ece09SJunchao Zhang // Sort garray2[] and then map them to local indices starting from 0 3740e3ece09SJunchao Zhang PetscCall(PetscSortInt(n2, garray2)); 3750e3ece09SJunchao Zhang PetscCall(PetscHMapIClear(g2l)); 3760e3ece09SJunchao Zhang for (PetscInt i = 0; i < tot; i++) PetscCall(PetscHMapISet(g2l, garray2[i], i)); // i is the local id 377f0e6e2d1SJunchao Zhang 3780e3ece09SJunchao Zhang // Rewrite indices[] with local indices 379f0e6e2d1SJunchao Zhang for (PetscInt i = 0; i < m; i++) { 3800e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, indices[i], -1, &val)); 3810e3ece09SJunchao Zhang PetscAssert(val >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Met a negative local column index"); 3820e3ece09SJunchao Zhang indices[i] = val; 3830e3ece09SJunchao Zhang } 3840e3ece09SJunchao Zhang // Record the map that maps garray1[i] to garray2[map[i]] 3850e3ece09SJunchao Zhang for (PetscInt i = 0; i < n1; i++) PetscCall(PetscHMapIGetWithDefault(g2l, garray1[i], -1, &map[i])); 3860e3ece09SJunchao Zhang PetscCall(PetscHMapIDestroy(&g2l)); 3870e3ece09SJunchao Zhang *n2_ = n2; 3880e3ece09SJunchao Zhang *garray2_ = garray2; 3890e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 3900e3ece09SJunchao Zhang } 391f0e6e2d1SJunchao Zhang 3920e3ece09SJunchao Zhang /* 3930e3ece09SJunchao Zhang MatMPIAIJKokkosReduce - Reduce rows of a MPIAIJKOKKOS matrix (E, in split form) to produce another matrix (F, also in split form, stored in mm) 3940e3ece09SJunchao Zhang 3950e3ece09SJunchao Zhang It is the reverse of MatMPIAIJKokkosBcast() in some sense, but with a different signature since we do not really need a fully populated MPIAIJKOKKOS E. 3960e3ece09SJunchao Zhang 3970e3ece09SJunchao Zhang Think each row of E as a leaf, then the given ownerSF specifies roots for the leaves. Roots may connect to multiple leaves. 3980e3ece09SJunchao Zhang In this routine, we sparse-merge leaves (rows) at their roots to form potentially longer rows in F. F's number of rows will be nroots of ownerSF. 3990e3ece09SJunchao Zhang 4000e3ece09SJunchao Zhang Input Parameters: 4010e3ece09SJunchao Zhang + comm - MPI communicator of E 4020e3ece09SJunchao Zhang . A - diag block of E, using local column indices 4030e3ece09SJunchao Zhang . B - off-diag block of E, using local column indices 4040e3ece09SJunchao Zhang . cstart - (global) start column of Ed 4050e3ece09SJunchao Zhang . cend - (global) end column + 1 of Ed. In other words, E's column ownership is in range of [cstart, cend) 4060e3ece09SJunchao Zhang . garray1[n1] - global column indices of Eo. Here n1 is Eo's column size. 4070e3ece09SJunchao Zhang . ownerSF - the SF specifies ownership (root) of rows in E 4080e3ece09SJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 4090e3ece09SJunchao Zhang - mm - to stash intermediate data structures for reuse 4100e3ece09SJunchao Zhang 4110e3ece09SJunchao Zhang Output Parameters: 4120e3ece09SJunchao Zhang + map[n1] - allocated by caller. It maps garray1[] to garray2[]. See more at ReduceTwoSetsOfGlobalIndices(). 4130e3ece09SJunchao Zhang - mm - contains various info, such as garray2[], F (Fd, Fo) etc. 4140e3ece09SJunchao Zhang 4150e3ece09SJunchao Zhang Notes: 4160e3ece09SJunchao Zhang When reuse = MAT_REUSE_MATRIX, cstart, cend, garray1, ownerSF, map are not significant. 4170e3ece09SJunchao Zhang 4180e3ece09SJunchao Zhang */ 4190e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosReduceBegin(MPI_Comm comm, KokkosCsrMatrix A, KokkosCsrMatrix B, PetscInt cstart, PetscInt cend, const PetscInt *garray1, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AtB *mm) 4200e3ece09SJunchao Zhang { 4210e3ece09SJunchao Zhang PetscFunctionBegin; 4220e3ece09SJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 4230e3ece09SJunchao Zhang PetscInt Em = A.numRows(), Fm; 4240e3ece09SJunchao Zhang PetscInt n1 = B.numCols(); 4250e3ece09SJunchao Zhang 4260e3ece09SJunchao Zhang PetscCall(PetscSFGetGraph(ownerSF, &Fm, NULL, NULL, NULL)); // Fm = #rows of F = nroots of ownerSF 4270e3ece09SJunchao Zhang 4280e3ece09SJunchao Zhang // Do the analysis on host 4290e3ece09SJunchao Zhang auto Ai_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), A.graph.row_map); 4300e3ece09SJunchao Zhang auto Aj_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), A.graph.entries); 4310e3ece09SJunchao Zhang auto Bi_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), B.graph.row_map); 4320e3ece09SJunchao Zhang auto Bj_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), B.graph.entries); 4330e3ece09SJunchao Zhang const MatRowMapType *Ai = Ai_h.data(), *Bi = Bi_h.data(); 4340e3ece09SJunchao Zhang const MatColIdxType *Aj = Aj_h.data(), *Bj = Bj_h.data(); 4350e3ece09SJunchao Zhang 4360e3ece09SJunchao Zhang // Count how many nonzeros of each row in E are in the left of the diag block [cstart,cend) 4377b8d4ba6SJunchao Zhang PetscIntKokkosViewHost E_NzLeft_h(NoInit("E_NzLeft_h"), Em), E_RowLen_h(NoInit("E_RowLen_h"), Em); 4380e3ece09SJunchao Zhang PetscInt *E_NzLeft = E_NzLeft_h.data(), *E_RowLen = E_RowLen_h.data(); 4390e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) { 4400e3ece09SJunchao Zhang const PetscInt *first, *last, *it; 4410e3ece09SJunchao Zhang PetscInt count, step; 4420e3ece09SJunchao Zhang // std::lower_bound(first,last,cstart), but need to use global column indices 4430e3ece09SJunchao Zhang first = Bj + Bi[i]; 4440e3ece09SJunchao Zhang last = Bj + Bi[i + 1]; 445f0e6e2d1SJunchao Zhang count = last - first; 446f0e6e2d1SJunchao Zhang while (count > 0) { 447f0e6e2d1SJunchao Zhang it = first; 448f0e6e2d1SJunchao Zhang step = count / 2; 449f0e6e2d1SJunchao Zhang it += step; 4500e3ece09SJunchao Zhang if (garray1[*it] < cstart) { // map local to global 451f0e6e2d1SJunchao Zhang first = ++it; 452f0e6e2d1SJunchao Zhang count -= step + 1; 453f0e6e2d1SJunchao Zhang } else count = step; 454f0e6e2d1SJunchao Zhang } 4550e3ece09SJunchao Zhang E_NzLeft[i] = first - (Bj + Bi[i]); 4560e3ece09SJunchao Zhang E_RowLen[i] = (Ai[i + 1] - Ai[i]) + (Bi[i + 1] - Bi[i]); 457f0e6e2d1SJunchao Zhang } 458f0e6e2d1SJunchao Zhang 4590e3ece09SJunchao Zhang // Get length of rows (i.e., sizes of leaves) that contribute to my roots 4600e3ece09SJunchao Zhang const PetscMPIInt *iranks, *ranks; 4610e3ece09SJunchao Zhang const PetscInt *ioffset, *irootloc, *roffset, *rmine; 4620e3ece09SJunchao Zhang PetscInt niranks, nranks; 4630e3ece09SJunchao Zhang MPI_Request *reqs; 4640e3ece09SJunchao Zhang PetscMPIInt tag; 4650e3ece09SJunchao Zhang PetscSF reduceSF; 4660e3ece09SJunchao Zhang PetscInt *sdisp, *rdisp; 467f0e6e2d1SJunchao Zhang 4680e3ece09SJunchao Zhang PetscCall(PetscCommGetNewTag(comm, &tag)); 4690e3ece09SJunchao Zhang PetscCall(PetscSFGetLeafRanks(ownerSF, &niranks, &iranks, &ioffset, &irootloc)); // get leaf ranks connecting to roots on this process (I'll recv from them) 4700e3ece09SJunchao Zhang PetscCall(PetscSFGetRootRanks(ownerSF, &nranks, &ranks, &roffset, &rmine, NULL)); // get root ranks this process connects (I'll send to them) 471f0e6e2d1SJunchao Zhang 4720e3ece09SJunchao Zhang // Find out length of each row I will receive. Even for the same row index, when they are from 4730e3ece09SJunchao Zhang // different senders, they might have different lengths (and sparsity patterns) 4740e3ece09SJunchao Zhang PetscInt sendRowCnt = roffset[nranks], recvRowCnt = ioffset[niranks]; 4750e3ece09SJunchao Zhang PetscInt *sendRowLen, *recvRowLen; // lengths of rows of I need to send/recv per process 476f0e6e2d1SJunchao Zhang 4770e3ece09SJunchao Zhang PetscCall(PetscMalloc5(sendRowCnt, &sendRowLen, recvRowCnt + 1, &recvRowLen, nranks, &sdisp, niranks + 1, &rdisp, nranks + niranks, &reqs)); 4780e3ece09SJunchao Zhang 4790e3ece09SJunchao Zhang for (PetscInt i = 0; i < sendRowCnt; i++) sendRowLen[i] = E_RowLen[rmine[i]]; 4800e3ece09SJunchao Zhang recvRowLen[0] = 0; // since we will make it in CSR format later 4810e3ece09SJunchao Zhang recvRowLen++; // advance the pointer now 4820e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { MPI_Irecv(&recvRowLen[ioffset[i]], ioffset[i + 1] - ioffset[i], MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i]); } 4830e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { MPI_Isend(&sendRowLen[roffset[i]], roffset[i + 1] - roffset[i], MPIU_INT, ranks[i], tag, comm, &reqs[i]); } 4840e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(nranks + niranks, reqs, MPI_STATUSES_IGNORE)); 4850e3ece09SJunchao Zhang 4860e3ece09SJunchao Zhang // Build the real PetscSF for reducing E rows (buffer to buffer) 4870e3ece09SJunchao Zhang rdisp[0] = 0; 4880e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { 4890e3ece09SJunchao Zhang rdisp[i + 1] = rdisp[i]; 4900e3ece09SJunchao Zhang for (PetscInt j = ioffset[i]; j < ioffset[i + 1]; j++) { rdisp[i + 1] += recvRowLen[j]; } 4910e3ece09SJunchao Zhang } 4920e3ece09SJunchao Zhang recvRowLen--; // put it back into csr format 4930e3ece09SJunchao Zhang for (PetscInt i = 0; i < recvRowCnt; i++) recvRowLen[i + 1] += recvRowLen[i]; 4940e3ece09SJunchao Zhang 4950e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { MPI_Irecv(&sdisp[i], 1, MPIU_INT, ranks[i], tag, comm, &reqs[i]); } 4960e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { MPI_Isend(&rdisp[i], 1, MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i]); } 4970e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(nranks + niranks, reqs, MPI_STATUSES_IGNORE)); 4980e3ece09SJunchao Zhang 4990e3ece09SJunchao Zhang PetscInt nleaves = 0, Enz = 0; // leaves are nonzeros I will send 5000e3ece09SJunchao Zhang PetscInt nroots = rdisp[niranks]; // roots are nonzeros I will recv 5010e3ece09SJunchao Zhang PetscSFNode *iremote; 5020e3ece09SJunchao Zhang 5030e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) Enz += E_RowLen[i]; 5040e3ece09SJunchao Zhang PetscAssert(A.nnz() + B.nnz() == Enz, comm, PETSC_ERR_PLIB, "Enz should be equal to sum of nnz of A and B"); 5050e3ece09SJunchao Zhang PetscCallMPI(PetscMalloc1(Enz, &iremote)); // no free, since we give ownership to reduceSF 5060e3ece09SJunchao Zhang 5070e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { 5080e3ece09SJunchao Zhang PetscInt count = 0; 5090e3ece09SJunchao Zhang for (PetscInt j = roffset[i]; j < roffset[i + 1]; j++) count += E_RowLen[rmine[j]]; 5100e3ece09SJunchao Zhang for (PetscInt j = 0; j < count; j++) { 5110e3ece09SJunchao Zhang iremote[nleaves + j].rank = ranks[i]; 5120e3ece09SJunchao Zhang iremote[nleaves + j].index = sdisp[i] + j; 5130e3ece09SJunchao Zhang } 5140e3ece09SJunchao Zhang nleaves += count; 5150e3ece09SJunchao Zhang } 5160e3ece09SJunchao Zhang PetscCheck(nleaves == Enz, comm, PETSC_ERR_PLIB, "nleaves should be equal to Enz"); 5170e3ece09SJunchao Zhang 5180e3ece09SJunchao Zhang PetscCall(PetscSFCreate(comm, &reduceSF)); 5190e3ece09SJunchao Zhang PetscCall(PetscSFSetGraph(reduceSF, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 5200e3ece09SJunchao Zhang 5210e3ece09SJunchao Zhang // Copy (global) column indices of the needed rows in E to sendCol[], and then PetscSFReduce to recvCol[] 5220e3ece09SJunchao Zhang PetscInt *sendCol, *recvCol; 5230e3ece09SJunchao Zhang PetscCall(PetscMalloc2(nleaves, &sendCol, nroots, &recvCol)); 5240e3ece09SJunchao Zhang for (PetscInt k = 0; k < roffset[nranks]; k++) { 5250e3ece09SJunchao Zhang PetscInt i = rmine[k]; // row to be copied 5260e3ece09SJunchao Zhang PetscInt *buf = &sendCol[Ai[i] + Bi[i]]; 5270e3ece09SJunchao Zhang PetscInt nzLeft = E_NzLeft[i]; 5280e3ece09SJunchao Zhang PetscInt alen = Ai[i + 1] - Ai[i], blen = Bi[i + 1] - Bi[i]; 5290e3ece09SJunchao Zhang for (PetscInt j = 0; j < alen + blen; j++) { 5300e3ece09SJunchao Zhang if (j < nzLeft) { 5310e3ece09SJunchao Zhang buf[j] = garray1[Bj[Bi[i] + j]]; // left B, in global 5320e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { 5330e3ece09SJunchao Zhang buf[j] = Aj[Ai[i] + j - nzLeft] + cstart; // diag A, also in global 5340e3ece09SJunchao Zhang } else { 5350e3ece09SJunchao Zhang buf[j] = garray1[Bj[Bi[i] + j - alen]]; // right B, in global 5360e3ece09SJunchao Zhang } 5370e3ece09SJunchao Zhang } 5380e3ece09SJunchao Zhang } 5390e3ece09SJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(reduceSF, MPIU_INT, PETSC_MEMTYPE_HOST, sendCol, PETSC_MEMTYPE_HOST, recvCol, MPI_REPLACE)); 5400e3ece09SJunchao Zhang PetscCall(PetscSFReduceEnd(reduceSF, MPIU_INT, sendCol, recvCol, MPI_REPLACE)); 5410e3ece09SJunchao Zhang 5420e3ece09SJunchao Zhang // With recvCol[], we do a series of analysis to get i, j of Fd, Fo, and build plans to reduce nonzeros in recv buffers to Fd and Fo 5430e3ece09SJunchao Zhang PetscInt *recvRowPerm, *recvColSorted; 5440e3ece09SJunchao Zhang PetscInt *recvNzPerm, *recvNzPermSorted; 5450e3ece09SJunchao Zhang PetscCall(PetscMalloc4(recvRowCnt, &recvRowPerm, nroots, &recvColSorted, nroots, &recvNzPerm, nroots, &recvNzPermSorted)); 5460e3ece09SJunchao Zhang 5470e3ece09SJunchao Zhang for (PetscInt i = 0; i < nroots; i++) recvNzPerm[i] = i; // numbering all received nonzeros 5480e3ece09SJunchao Zhang for (PetscInt i = 0; i < recvRowCnt; i++) recvRowPerm[i] = i; // put up a permutation array, so that after sorting we know where to get a row in recvCol[] 5490e3ece09SJunchao Zhang PetscCall(PetscSortIntWithPermutation(recvRowCnt, irootloc, recvRowPerm)); // irootloc[] (owned by ownerSF) won't be changed 5500e3ece09SJunchao Zhang 5510e3ece09SJunchao Zhang // i[] array, nz are always easiest to compute 5527b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdi_h(NoInit("Fdi_h"), Fm + 1), Foi_h(NoInit("Foi_h"), Fm + 1); 5530e3ece09SJunchao Zhang MatRowMapType *Fdi, *Foi; 5540e3ece09SJunchao Zhang PetscInt FnzDups = 0, Fdnz = 0, FdnzDups = 0, Fonz = 0, FonzDups = 0; // nz (with or without dups) in F, Fd, Fo 5550e3ece09SJunchao Zhang PetscInt iter; 5560e3ece09SJunchao Zhang 5570e3ece09SJunchao Zhang Kokkos::deep_copy(Fdi_h, 0); // zero, as we will do 'val++' on them 5580e3ece09SJunchao Zhang Kokkos::deep_copy(Foi_h, 0); 5590e3ece09SJunchao Zhang Fdi = Fdi_h.data() + 1; // +1 for easy indexing in code below 5600e3ece09SJunchao Zhang Foi = Foi_h.data() + 1; 5610e3ece09SJunchao Zhang iter = 0; 5620e3ece09SJunchao Zhang while (iter < recvRowCnt) { // iter over received rows 5630e3ece09SJunchao Zhang PetscInt curRowIdx = irootloc[recvRowPerm[iter]]; 5640e3ece09SJunchao Zhang PetscInt dupRows = 1; // current row has this many contributing rows (of various sparsity patterns) 5650e3ece09SJunchao Zhang 5660e3ece09SJunchao Zhang while (iter + dupRows < recvRowCnt && irootloc[recvRowPerm[iter + dupRows]] == curRowIdx) dupRows++; 5670e3ece09SJunchao Zhang 5680e3ece09SJunchao Zhang // Copy column indices (and their permutation) of these rows into recvColSorted & recvNzPermSorted 5690e3ece09SJunchao Zhang PetscInt nz = 0; // nz (with dups) in the current row 5700e3ece09SJunchao Zhang PetscInt *jbuf = recvColSorted + FnzDups; 5710e3ece09SJunchao Zhang PetscInt *pbuf = recvNzPermSorted + FnzDups; 5720e3ece09SJunchao Zhang PetscInt *jbuf2 = jbuf; // temp pointers 5730e3ece09SJunchao Zhang PetscInt *pbuf2 = pbuf; 5740e3ece09SJunchao Zhang for (PetscInt d = 0; d < dupRows; d++) { 5750e3ece09SJunchao Zhang PetscInt i = recvRowPerm[iter + d]; 5760e3ece09SJunchao Zhang PetscInt len = recvRowLen[i + 1] - recvRowLen[i]; 5770e3ece09SJunchao Zhang PetscCall(PetscArraycpy(jbuf2, &recvCol[recvRowLen[i]], len)); 5780e3ece09SJunchao Zhang PetscCall(PetscArraycpy(pbuf2, &recvNzPerm[recvRowLen[i]], len)); 5790e3ece09SJunchao Zhang jbuf2 += len; 5800e3ece09SJunchao Zhang pbuf2 += len; 5810e3ece09SJunchao Zhang nz += len; 5820e3ece09SJunchao Zhang } 5830e3ece09SJunchao Zhang PetscCall(PetscIntSortSemiOrderedWithArray(nz, jbuf, pbuf)); // It could be improved with k-way merge sort, since the rows are already sorted 5840e3ece09SJunchao Zhang 5850e3ece09SJunchao Zhang // Scan column indices (in jbuf[0,nz), might have dups) of this row, and see how many go to Fd and how many go to Fo 5860e3ece09SJunchao Zhang PetscInt cur = 0; 5870e3ece09SJunchao Zhang while (cur < nz) { 5880e3ece09SJunchao Zhang PetscInt curColIdx = jbuf[cur]; 5890e3ece09SJunchao Zhang PetscInt dups = 1; 5900e3ece09SJunchao Zhang 5910e3ece09SJunchao Zhang while (cur + dups < nz && jbuf[cur + dups] == curColIdx) dups++; 5920e3ece09SJunchao Zhang if (curColIdx >= cstart && curColIdx < cend) { 5930e3ece09SJunchao Zhang Fdi[curRowIdx]++; 5940e3ece09SJunchao Zhang FdnzDups += dups; 5950e3ece09SJunchao Zhang } else { 5960e3ece09SJunchao Zhang Foi[curRowIdx]++; 5970e3ece09SJunchao Zhang FonzDups += dups; 5980e3ece09SJunchao Zhang } 5990e3ece09SJunchao Zhang cur += dups; 6000e3ece09SJunchao Zhang } 6010e3ece09SJunchao Zhang 6020e3ece09SJunchao Zhang FnzDups += nz; 6030e3ece09SJunchao Zhang iter += dupRows; // Move to next unique row 6040e3ece09SJunchao Zhang } 6050e3ece09SJunchao Zhang 6060e3ece09SJunchao Zhang Fdi = Fdi_h.data(); // restore Fdi, Foi and make them CSR 6070e3ece09SJunchao Zhang Foi = Foi_h.data(); 6080e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 6090e3ece09SJunchao Zhang Fdi[i + 1] += Fdi[i]; 6100e3ece09SJunchao Zhang Foi[i + 1] += Foi[i]; 6110e3ece09SJunchao Zhang } 6120e3ece09SJunchao Zhang Fdnz = Fdi[Fm]; 6130e3ece09SJunchao Zhang Fonz = Foi[Fm]; 6140e3ece09SJunchao Zhang PetscCall(PetscFree2(sendCol, recvCol)); 6150e3ece09SJunchao Zhang 6160e3ece09SJunchao Zhang // Allocate j, jmap, jperm for Fd and Fo 6177b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost Fdj_h(NoInit("Fdj_h"), Fdnz), Foj_h(NoInit("Foj_h"), Fonz); 6187b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdjmap_h(NoInit("Fdjmap_h"), Fdnz + 1), Fojmap_h(NoInit("Fojmap_h"), Fonz + 1); // +1 to make csr 6197b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdjperm_h(NoInit("Fdjperm_h"), FdnzDups), Fojperm_h(NoInit("Fojperm_h"), FonzDups); 6200e3ece09SJunchao Zhang MatColIdxType *Fdj = Fdj_h.data(), *Foj = Foj_h.data(); 6210e3ece09SJunchao Zhang MatRowMapType *Fdjmap = Fdjmap_h.data(), *Fojmap = Fojmap_h.data(); 6220e3ece09SJunchao Zhang MatRowMapType *Fdjperm = Fdjperm_h.data(), *Fojperm = Fojperm_h.data(); 6230e3ece09SJunchao Zhang 6240e3ece09SJunchao Zhang // Scan recvColSorted[] again, and fill j, jmap, jperm for Fd and Fo 6250e3ece09SJunchao Zhang Fdjmap[0] = 0; 6260e3ece09SJunchao Zhang Fojmap[0] = 0; 6270e3ece09SJunchao Zhang FnzDups = 0; 6280e3ece09SJunchao Zhang Fdnz = 0; 6290e3ece09SJunchao Zhang Fonz = 0; 6300e3ece09SJunchao Zhang iter = 0; // iter over received rows 6310e3ece09SJunchao Zhang while (iter < recvRowCnt) { 6320e3ece09SJunchao Zhang PetscInt curRowIdx = irootloc[recvRowPerm[iter]]; // current row idx 6330e3ece09SJunchao Zhang PetscInt dupRows = 1; // It has this many contributing rows (of various lengths) 6340e3ece09SJunchao Zhang PetscInt nz = 0; // nz (with dups) in the current row 6350e3ece09SJunchao Zhang 6360e3ece09SJunchao Zhang while (iter + dupRows < recvRowCnt && irootloc[recvRowPerm[iter + dupRows]] == curRowIdx) dupRows++; 6370e3ece09SJunchao Zhang for (PetscInt d = 0; d < dupRows; d++) { 6380e3ece09SJunchao Zhang PetscInt i = recvRowPerm[iter + d]; 6390e3ece09SJunchao Zhang nz += recvRowLen[i + 1] - recvRowLen[i]; 6400e3ece09SJunchao Zhang } 6410e3ece09SJunchao Zhang 6420e3ece09SJunchao Zhang PetscInt *jbuf = recvColSorted + FnzDups; 6430e3ece09SJunchao Zhang // Scan columns (in jbuf[0,nz) of this row, copy them and their permutation to j[] and jperm[] of Fd and Fo 6440e3ece09SJunchao Zhang PetscInt cur = 0; 6450e3ece09SJunchao Zhang while (cur < nz) { 6460e3ece09SJunchao Zhang PetscInt curColIdx = jbuf[cur]; 6470e3ece09SJunchao Zhang PetscInt dups = 1; 6480e3ece09SJunchao Zhang 6490e3ece09SJunchao Zhang while (cur + dups < nz && jbuf[cur + dups] == curColIdx) dups++; 6500e3ece09SJunchao Zhang if (curColIdx >= cstart && curColIdx < cend) { 6510e3ece09SJunchao Zhang Fdj[Fdnz] = curColIdx - cstart; // easily convert to local 6520e3ece09SJunchao Zhang Fdjmap[Fdnz + 1] = Fdjmap[Fdnz] + dups; 6530e3ece09SJunchao Zhang for (PetscInt j = 0; j < dups; j++) Fdjperm[Fdjmap[Fdnz] + j] = recvNzPermSorted[FnzDups + j]; 6540e3ece09SJunchao Zhang FdnzDups += dups; 6550e3ece09SJunchao Zhang Fdnz++; 6560e3ece09SJunchao Zhang } else { 6570e3ece09SJunchao Zhang Foj[Fonz] = curColIdx; // in global 6580e3ece09SJunchao Zhang Fojmap[Fonz + 1] = Fojmap[Fonz] + dups; 6590e3ece09SJunchao Zhang for (PetscInt j = 0; j < dups; j++) Fojperm[Fojmap[Fonz] + j] = recvNzPermSorted[FnzDups + j]; 6600e3ece09SJunchao Zhang FonzDups += dups; 6610e3ece09SJunchao Zhang Fonz++; 6620e3ece09SJunchao Zhang } 6630e3ece09SJunchao Zhang cur += dups; 6640e3ece09SJunchao Zhang FnzDups += dups; 6650e3ece09SJunchao Zhang } 6660e3ece09SJunchao Zhang iter += dupRows; // Move to next unique row 6670e3ece09SJunchao Zhang } 6680e3ece09SJunchao Zhang PetscCall(PetscFree4(recvRowPerm, recvColSorted, recvNzPerm, recvNzPermSorted)); 6690e3ece09SJunchao Zhang PetscCall(PetscFree5(sendRowLen, recvRowLen, sdisp, rdisp, reqs)); 6700e3ece09SJunchao Zhang 6710e3ece09SJunchao Zhang // Combine global column indices in garray1[] and Foj[] 6720e3ece09SJunchao Zhang PetscInt n2, *garray2; 6730e3ece09SJunchao Zhang 6740e3ece09SJunchao Zhang PetscCall(ReduceTwoSetsOfGlobalIndices(n1, garray1, Fonz, Foj, &n2, &garray2, map)); 6750e3ece09SJunchao Zhang mm->sf = reduceSF; 6767b8d4ba6SJunchao Zhang mm->leafBuf = MatScalarKokkosView(NoInit("leafBuf"), nleaves); 6777b8d4ba6SJunchao Zhang mm->rootBuf = MatScalarKokkosView(NoInit("rootBuf"), nroots); 678aaa8cc7dSPierre Jolivet mm->garray = garray2; // give ownership, so no free 6790e3ece09SJunchao Zhang mm->n = n2; 6800e3ece09SJunchao Zhang mm->E_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), E_NzLeft_h); 6810e3ece09SJunchao Zhang mm->Fdjmap = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdjmap_h); 6820e3ece09SJunchao Zhang mm->Fdjperm = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdjperm_h); 6830e3ece09SJunchao Zhang mm->Fojmap = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fojmap_h); 6840e3ece09SJunchao Zhang mm->Fojperm = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fojperm_h); 6850e3ece09SJunchao Zhang 6860e3ece09SJunchao Zhang // Output Fd and Fo in KokkosCsrMatrix format 6877b8d4ba6SJunchao Zhang MatScalarKokkosView Fda_d(NoInit("Fda_d"), Fdnz); 6880e3ece09SJunchao Zhang MatRowMapKokkosView Fdi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdi_h); 6890e3ece09SJunchao Zhang MatColIdxKokkosView Fdj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdj_h); 6907b8d4ba6SJunchao Zhang MatScalarKokkosView Foa_d(NoInit("Foa_d"), Fonz); 6910e3ece09SJunchao Zhang MatRowMapKokkosView Foi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foi_h); 6920e3ece09SJunchao Zhang MatColIdxKokkosView Foj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foj_h); 6930e3ece09SJunchao Zhang 6940e3ece09SJunchao Zhang PetscCallCXX(mm->Fd = KokkosCsrMatrix("Fd", Fm, cend - cstart, Fdnz, Fda_d, Fdi_d, Fdj_d)); 6950e3ece09SJunchao Zhang PetscCallCXX(mm->Fo = KokkosCsrMatrix("Fo", Fm, n2, Fonz, Foa_d, Foi_d, Foj_d)); // Fo's column size is n2, length of garray2[] 6960e3ece09SJunchao Zhang 6970e3ece09SJunchao Zhang // Compute kernel launch parameters in merging E 6980e3ece09SJunchao Zhang PetscInt teamSize, vectorLength, rowsPerTeam; 6990e3ece09SJunchao Zhang 7000e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 7010e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(Em, Enz, -1, teamSize, vectorLength, rowsPerTeam)); 7020e3ece09SJunchao Zhang mm->E_TeamSize = teamSize; 7030e3ece09SJunchao Zhang mm->E_VectorLength = vectorLength; 7040e3ece09SJunchao Zhang mm->E_RowsPerTeam = rowsPerTeam; 7050e3ece09SJunchao Zhang } else PetscCheck(reuse == MAT_REUSE_MATRIX, comm, PETSC_ERR_PLIB, "Unsupported MatReuse enum %d", reuse); 7060e3ece09SJunchao Zhang 7070e3ece09SJunchao Zhang // Handy aliases 7080e3ece09SJunchao Zhang auto &Aa = A.values; 7090e3ece09SJunchao Zhang auto &Ba = B.values; 7100e3ece09SJunchao Zhang const auto &Ai = A.graph.row_map; 7110e3ece09SJunchao Zhang const auto &Bi = B.graph.row_map; 7120e3ece09SJunchao Zhang const auto &E_NzLeft = mm->E_NzLeft; 7130e3ece09SJunchao Zhang auto &leafBuf = mm->leafBuf; 7140e3ece09SJunchao Zhang auto &rootBuf = mm->rootBuf; 7150e3ece09SJunchao Zhang PetscSF reduceSF = mm->sf; 7160e3ece09SJunchao Zhang PetscInt Em = A.numRows(); 7170e3ece09SJunchao Zhang PetscInt teamSize = mm->E_TeamSize; 7180e3ece09SJunchao Zhang PetscInt vectorLength = mm->E_VectorLength; 7190e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->E_RowsPerTeam; 7200e3ece09SJunchao Zhang PetscInt workSets = (Em + rowsPerTeam - 1) / rowsPerTeam; 7210e3ece09SJunchao Zhang 7220e3ece09SJunchao Zhang // Copy rows in A/B of E to leafBuf, then pass it to rootBuf 7230e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 724d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(PetscGetKokkosExecutionSpace(), workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 7250e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 7260e3ece09SJunchao Zhang PetscInt i = t.league_rank() * rowsPerTeam + k; // i-th row in F 7270e3ece09SJunchao Zhang if (i < Em) { 7280e3ece09SJunchao Zhang PetscInt disp = Ai(i) + Bi(i); 7290e3ece09SJunchao Zhang PetscInt alen = Ai(i + 1) - Ai(i); 7300e3ece09SJunchao Zhang PetscInt blen = Bi(i + 1) - Bi(i); 7310e3ece09SJunchao Zhang PetscInt nzleft = E_NzLeft(i); 7320e3ece09SJunchao Zhang 7330e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 7340e3ece09SJunchao Zhang MatScalar &val = leafBuf(disp + j); 7350e3ece09SJunchao Zhang if (j < nzleft) { // B left 7360e3ece09SJunchao Zhang val = Ba(Bi(i) + j); 7370e3ece09SJunchao Zhang } else if (j < nzleft + alen) { // diag A 7380e3ece09SJunchao Zhang val = Aa(Ai(i) + j - nzleft); 7390e3ece09SJunchao Zhang } else { // B right 7400e3ece09SJunchao Zhang val = Ba(Bi(i) + j - alen); 741f0e6e2d1SJunchao Zhang } 742f0e6e2d1SJunchao Zhang }); 743f0e6e2d1SJunchao Zhang } 744f0e6e2d1SJunchao Zhang }); 7450e3ece09SJunchao Zhang })); 7460e3ece09SJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(reduceSF, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, leafBuf.data(), PETSC_MEMTYPE_KOKKOS, rootBuf.data(), MPI_REPLACE)); 747f0e6e2d1SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 748f0e6e2d1SJunchao Zhang } 7490e3ece09SJunchao Zhang 750aaa8cc7dSPierre Jolivet // To finish MatMPIAIJKokkosReduce. 7510e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosReduceEnd(MPI_Comm comm, KokkosCsrMatrix A, KokkosCsrMatrix B, PetscInt cstart, PetscInt cend, const PetscInt *garray1, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AtB *mm) 7520e3ece09SJunchao Zhang { 7530e3ece09SJunchao Zhang auto &leafBuf = mm->leafBuf; 7540e3ece09SJunchao Zhang auto &rootBuf = mm->rootBuf; 7550e3ece09SJunchao Zhang auto &Fda = mm->Fd.values; 7560e3ece09SJunchao Zhang const auto &Fdjmap = mm->Fdjmap; 7570e3ece09SJunchao Zhang const auto &Fdjperm = mm->Fdjperm; 7580e3ece09SJunchao Zhang auto Fdnz = mm->Fd.nnz(); 7590e3ece09SJunchao Zhang auto &Foa = mm->Fo.values; 7600e3ece09SJunchao Zhang const auto &Fojmap = mm->Fojmap; 7610e3ece09SJunchao Zhang const auto &Fojperm = mm->Fojperm; 7620e3ece09SJunchao Zhang auto Fonz = mm->Fo.nnz(); 7630e3ece09SJunchao Zhang PetscSF reduceSF = mm->sf; 7640e3ece09SJunchao Zhang 765d326c3f1SJunchao Zhang PetscFunctionBegin; 7660e3ece09SJunchao Zhang PetscCall(PetscSFReduceEnd(reduceSF, MPIU_SCALAR, leafBuf.data(), rootBuf.data(), MPI_REPLACE)); 7670e3ece09SJunchao Zhang 7680e3ece09SJunchao Zhang // Reduce data in rootBuf to Fd and Fo 7690e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 770d326c3f1SJunchao Zhang Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, Fdnz), KOKKOS_LAMBDA(const MatRowMapType i) { 7710e3ece09SJunchao Zhang PetscScalar sum = 0.0; 7720e3ece09SJunchao Zhang for (MatRowMapType k = Fdjmap(i); k < Fdjmap(i + 1); k++) sum += rootBuf(Fdjperm(k)); 7730e3ece09SJunchao Zhang Fda(i) = sum; 7740e3ece09SJunchao Zhang })); 7750e3ece09SJunchao Zhang 7760e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 777d326c3f1SJunchao Zhang Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, Fonz), KOKKOS_LAMBDA(const MatRowMapType i) { 7780e3ece09SJunchao Zhang PetscScalar sum = 0.0; 7790e3ece09SJunchao Zhang for (MatRowMapType k = Fojmap(i); k < Fojmap(i + 1); k++) sum += rootBuf(Fojperm(k)); 7800e3ece09SJunchao Zhang Foa(i) = sum; 7810e3ece09SJunchao Zhang })); 7820e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 7830e3ece09SJunchao Zhang } 7840e3ece09SJunchao Zhang 7850e3ece09SJunchao Zhang /* 7860e3ece09SJunchao Zhang MatMPIAIJKokkosBcast - Bcast local rows of a MPIAIJKOKKOS matrix (E) to produce a local matrix (F, stored in mm) in split form 7870e3ece09SJunchao Zhang 7880e3ece09SJunchao Zhang This is a complex routine. It is essentially the MPIAIJKOKKOS counterpart of MatGetBrowsOfAoCols_MPIAIJ, but supports 7890e3ece09SJunchao Zhang device and involves various index mapping. 7900e3ece09SJunchao Zhang 7910e3ece09SJunchao Zhang In the given ownerSF, leaves correspond to rows in F, and roots correspond to rows in E. Roots may connect to multiple leaves. 7920e3ece09SJunchao Zhang Suppose F's j-th row is connected to a root identified by PetscSFNode (k,i), it means we need to bcast the i-th row of E on rank k 7930e3ece09SJunchao Zhang to j-th row of F. ownerSF is not an arbitrary SF, instead it is the Mvctx of another MPIAIJ matrix A that is able to perform A*E. 7940e3ece09SJunchao Zhang F has the same column layout as E. 7950e3ece09SJunchao Zhang 7960e3ece09SJunchao Zhang Conceptually F has global column indices. In this routine, we spit F into diagonal Fd and off-diagonal Fo. 797aaa8cc7dSPierre Jolivet Fd uses local column indices, which are easy to compute. We just need to subtract the "local column range start" from the global indices. 7980e3ece09SJunchao Zhang Fo had global column indices at first. We will reduce them into local ones. In doing that, we also take into account the global 7990e3ece09SJunchao Zhang column indices that E's off-diag block has. Let's say there are n1 such indices stored in garray1[]. We will reduce them along with 8000e3ece09SJunchao Zhang column indices in Fo and update Fo with local indices. 8010e3ece09SJunchao Zhang 8020e3ece09SJunchao Zhang Input Parameters: 8030e3ece09SJunchao Zhang + E - the MPIAIJKOKKOS matrix 8049c89aa79SPierre Jolivet . ownerSF - the ownership SF (insignificant in MAT_REUSE_MATRIX) 8050e3ece09SJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 8060e3ece09SJunchao Zhang - mm - to stash matproduct intermediate data structures 8070e3ece09SJunchao Zhang 8080e3ece09SJunchao Zhang Output Parameters: 8090e3ece09SJunchao Zhang + map[n1] - allocated by caller. It maps garray1[] to garray2[]. See more at ReduceTwoSetsOfGlobalIndices. 8100e3ece09SJunchao Zhang - mm - contains various info, such as garray2[], Fd, Fo, etc. 8110e3ece09SJunchao Zhang 8120e3ece09SJunchao Zhang Notes: 8130e3ece09SJunchao Zhang When reuse = MAT_REUSE_MATRIX, ownerSF, map are not significant. 8140e3ece09SJunchao Zhang The routine is provide in split-phase form MatMPIAIJKokkosBcastBegin/End() to provide computation/communication opportunities. 8150e3ece09SJunchao Zhang */ 8160e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosBcastBegin(Mat E, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AB *mm) 8170e3ece09SJunchao Zhang { 8180e3ece09SJunchao Zhang Mat_MPIAIJ *empi = static_cast<Mat_MPIAIJ *>(E->data); 8190e3ece09SJunchao Zhang Mat A = empi->A, B = empi->B; // diag and off-diag 8200e3ece09SJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos *>(A->spptr), *bkok = static_cast<Mat_SeqAIJKokkos *>(B->spptr); 8210e3ece09SJunchao Zhang PetscInt Em = E->rmap->n; // #local rows 8220e3ece09SJunchao Zhang MPI_Comm comm; 8230e3ece09SJunchao Zhang 8240e3ece09SJunchao Zhang PetscFunctionBegin; 8250e3ece09SJunchao Zhang PetscCallMPI(PetscObjectGetComm((PetscObject)E, &comm)); 8260e3ece09SJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 8270e3ece09SJunchao Zhang Mat_SeqAIJ *aseq = static_cast<Mat_SeqAIJ *>(A->data), *bseq = static_cast<Mat_SeqAIJ *>(B->data); 8280e3ece09SJunchao Zhang PetscInt n1 = B->cmap->n, *Ai = aseq->i, *Aj = aseq->j, *Bi = bseq->i, *Bj = bseq->j; 8290e3ece09SJunchao Zhang const PetscInt *garray1 = empi->garray; // its size is n1 8300e3ece09SJunchao Zhang PetscInt cstart, cend; 8310e3ece09SJunchao Zhang PetscSF bcastSF; 8320e3ece09SJunchao Zhang 8330e3ece09SJunchao Zhang PetscCall(MatGetOwnershipRangeColumn(E, &cstart, &cend)); 8340e3ece09SJunchao Zhang 8350e3ece09SJunchao Zhang // Count how many nonzeros of each row in E are in the left of the diag block [cstart,cend) 8367b8d4ba6SJunchao Zhang PetscIntKokkosViewHost E_NzLeft_h(NoInit("E_NzLeft_h"), Em), E_RowLen_h(NoInit("E_RowLen_h"), Em); 8370e3ece09SJunchao Zhang PetscInt *E_NzLeft = E_NzLeft_h.data(), *E_RowLen = E_RowLen_h.data(); 8380e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) { 8390e3ece09SJunchao Zhang const PetscInt *first, *last, *it; 8400e3ece09SJunchao Zhang PetscInt count, step; 8410e3ece09SJunchao Zhang // std::lower_bound(first,last,cstart), but need to use global column indices 8420e3ece09SJunchao Zhang first = Bj + Bi[i]; 8430e3ece09SJunchao Zhang last = Bj + Bi[i + 1]; 8440e3ece09SJunchao Zhang count = last - first; 8450e3ece09SJunchao Zhang while (count > 0) { 8460e3ece09SJunchao Zhang it = first; 8470e3ece09SJunchao Zhang step = count / 2; 8480e3ece09SJunchao Zhang it += step; 8490e3ece09SJunchao Zhang if (empi->garray[*it] < cstart) { // map local to global 8500e3ece09SJunchao Zhang first = ++it; 8510e3ece09SJunchao Zhang count -= step + 1; 8520e3ece09SJunchao Zhang } else count = step; 8530e3ece09SJunchao Zhang } 8540e3ece09SJunchao Zhang E_NzLeft[i] = first - (Bj + Bi[i]); 8550e3ece09SJunchao Zhang E_RowLen[i] = (Ai[i + 1] - Ai[i]) + (Bi[i + 1] - Bi[i]); 8560e3ece09SJunchao Zhang } 8570e3ece09SJunchao Zhang 8580e3ece09SJunchao Zhang // Compute row pointer Fi of F 8590e3ece09SJunchao Zhang PetscInt *Fi, Fm, Fnz; 8600e3ece09SJunchao Zhang PetscCall(PetscSFGetGraph(ownerSF, NULL, &Fm, NULL, NULL)); // Fm = #rows of F = nleaves of ownerSF 8610e3ece09SJunchao Zhang PetscCall(PetscMalloc1(Fm + 1, &Fi)); 8620e3ece09SJunchao Zhang Fi[0] = 0; 8630e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(ownerSF, MPIU_INT, PETSC_MEMTYPE_HOST, E_RowLen, PETSC_MEMTYPE_HOST, &Fi[1], MPI_REPLACE)); 8640e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(ownerSF, MPIU_INT, E_RowLen, &Fi[1], MPI_REPLACE)); 8650e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) Fi[i + 1] += Fi[i]; 8660e3ece09SJunchao Zhang Fnz = Fi[Fm]; 8670e3ece09SJunchao Zhang 8680e3ece09SJunchao Zhang // Build the real PetscSF for bcasting E rows (buffer to buffer) 8690e3ece09SJunchao Zhang const PetscMPIInt *iranks, *ranks; 8700e3ece09SJunchao Zhang const PetscInt *ioffset, *irootloc, *roffset; 8710e3ece09SJunchao Zhang PetscInt niranks, nranks, *sdisp, *rdisp; 8720e3ece09SJunchao Zhang MPI_Request *reqs; 8730e3ece09SJunchao Zhang PetscMPIInt tag; 8740e3ece09SJunchao Zhang 8750e3ece09SJunchao Zhang PetscCall(PetscSFGetLeafRanks(ownerSF, &niranks, &iranks, &ioffset, &irootloc)); // get leaf ranks referencing roots on this process 8760e3ece09SJunchao Zhang PetscCall(PetscSFGetRootRanks(ownerSF, &nranks, &ranks, &roffset, NULL, NULL)); // recv info 8770e3ece09SJunchao Zhang PetscCall(PetscMalloc3(niranks + 1, &sdisp, nranks, &rdisp, niranks + nranks, &reqs)); 8780e3ece09SJunchao Zhang 8790e3ece09SJunchao Zhang sdisp[0] = 0; // send displacement 8800e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { 8810e3ece09SJunchao Zhang sdisp[i + 1] = sdisp[i]; 8820e3ece09SJunchao Zhang for (PetscInt j = ioffset[i]; j < ioffset[i + 1]; j++) { 8830e3ece09SJunchao Zhang PetscInt r = irootloc[j]; // row to be sent 8840e3ece09SJunchao Zhang sdisp[i + 1] += E_RowLen[r]; 8850e3ece09SJunchao Zhang } 8860e3ece09SJunchao Zhang } 8870e3ece09SJunchao Zhang 8880e3ece09SJunchao Zhang PetscCallMPI(PetscCommGetNewTag(comm, &tag)); 8890e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) PetscCallMPI(MPI_Irecv(&rdisp[i], 1, MPIU_INT, ranks[i], tag, comm, &reqs[i])); 8900e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) PetscCallMPI(MPI_Isend(&sdisp[i], 1, MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i])); 8910e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(niranks + nranks, reqs, MPI_STATUSES_IGNORE)); 8920e3ece09SJunchao Zhang 8930e3ece09SJunchao Zhang PetscInt nleaves = Fnz; // leaves are nonzeros I will receive 8940e3ece09SJunchao Zhang PetscInt nroots = sdisp[niranks]; // roots are nonzeros I will send 8950e3ece09SJunchao Zhang PetscSFNode *iremote; // give ownership to bcastSF 8960e3ece09SJunchao Zhang PetscCall(PetscMalloc1(nleaves, &iremote)); 8970e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { // for each sender rank 8980e3ece09SJunchao Zhang PetscInt k = 0; 8990e3ece09SJunchao Zhang for (PetscInt j = Fi[roffset[i]]; j < Fi[roffset[i + 1]]; j++) { // I will receive rows [roffset[i], roffset[i+1]) of F from ranks[i] 9000e3ece09SJunchao Zhang iremote[j].rank = ranks[i]; 9010e3ece09SJunchao Zhang iremote[j].index = rdisp[i] + k; // their root location 9020e3ece09SJunchao Zhang k++; 9030e3ece09SJunchao Zhang } 9040e3ece09SJunchao Zhang } 9050e3ece09SJunchao Zhang PetscCall(PetscSFCreate(comm, &bcastSF)); 9060e3ece09SJunchao Zhang PetscCall(PetscSFSetGraph(bcastSF, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 9070e3ece09SJunchao Zhang PetscCall(PetscFree3(sdisp, rdisp, reqs)); 9080e3ece09SJunchao Zhang 9090e3ece09SJunchao Zhang // Build a plan (rowoffset, irootloc, E_NzLeft) to copy rows in E to rootdata of bcastSF in parallel 9107b8d4ba6SJunchao Zhang PetscIntKokkosViewHost rowoffset_h(NoInit("rowoffset_h"), ioffset[niranks] + 1); 9110e3ece09SJunchao Zhang PetscInt *rowoffset = rowoffset_h.data(); // for each entry (row) indicated in irootloc[], we calculate its destinate offset in copying 9120e3ece09SJunchao Zhang rowoffset[0] = 0; 9137b8d4ba6SJunchao Zhang for (PetscInt i = 0; i < ioffset[niranks]; i++) { rowoffset[i + 1] = rowoffset[i] + E_RowLen[irootloc[i]]; } 9140e3ece09SJunchao Zhang 9150e3ece09SJunchao Zhang // Copy (global) column indices of the needed rows in E to a buffer, and then bcast to Fj[] 9160e3ece09SJunchao Zhang PetscInt *jbuf, *Fj; 9170e3ece09SJunchao Zhang PetscCall(PetscMalloc2(nroots, &jbuf, Fnz, &Fj)); 9180e3ece09SJunchao Zhang for (PetscInt k = 0; k < ioffset[niranks]; k++) { 9190e3ece09SJunchao Zhang PetscInt i = irootloc[k]; // row to be copied 9200e3ece09SJunchao Zhang PetscInt *buf = &jbuf[rowoffset[k]]; 9210e3ece09SJunchao Zhang PetscInt nzLeft = E_NzLeft[i]; 9220e3ece09SJunchao Zhang PetscInt alen = Ai[i + 1] - Ai[i], blen = Bi[i + 1] - Bi[i]; 9230e3ece09SJunchao Zhang for (PetscInt j = 0; j < alen + blen; j++) { 9240e3ece09SJunchao Zhang if (j < nzLeft) { 9250e3ece09SJunchao Zhang buf[j] = empi->garray[Bj[Bi[i] + j]]; // left B, in global 9260e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { 9270e3ece09SJunchao Zhang buf[j] = Aj[Ai[i] + j - nzLeft] + cstart; // diag A, also in global 9280e3ece09SJunchao Zhang } else { 9290e3ece09SJunchao Zhang buf[j] = empi->garray[Bj[Bi[i] + j - alen]]; // right B, in global 9300e3ece09SJunchao Zhang } 9310e3ece09SJunchao Zhang } 9320e3ece09SJunchao Zhang } 9330e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(bcastSF, MPIU_INT, PETSC_MEMTYPE_HOST, jbuf, PETSC_MEMTYPE_HOST, Fj, MPI_REPLACE)); 9340e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(bcastSF, MPIU_INT, jbuf, Fj, MPI_REPLACE)); 9350e3ece09SJunchao Zhang 9360e3ece09SJunchao Zhang // Build a plan (i.e., F_NzLeft) to split F into Fd and Fo 9377b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdi_h(NoInit("Fdi_h"), Fm + 1), Foi_h(NoInit("Foi_h"), Fm + 1); // row pointer of Fd, Fo 9387b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost F_NzLeft_h(NoInit("F_NzLeft_h"), Fm); // split each row of F into Left, Diag, Right. We only need to record #nz in Left and Diag. 9390e3ece09SJunchao Zhang MatRowMapType *Fdi = Fdi_h.data(), *Foi = Foi_h.data(); 9400e3ece09SJunchao Zhang MatColIdxType *F_NzLeft = F_NzLeft_h.data(); 9410e3ece09SJunchao Zhang 9420e3ece09SJunchao Zhang Fdi[0] = Foi[0] = 0; 9430e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9440e3ece09SJunchao Zhang PetscInt *first, *last, *lb1, *lb2; 9450e3ece09SJunchao Zhang // cut the row into: Left, [cstart, cend), Right 9460e3ece09SJunchao Zhang first = Fj + Fi[i]; 9470e3ece09SJunchao Zhang last = Fj + Fi[i + 1]; 9480e3ece09SJunchao Zhang lb1 = std::lower_bound(first, last, cstart); 9490e3ece09SJunchao Zhang F_NzLeft[i] = lb1 - first; 9500e3ece09SJunchao Zhang lb2 = std::lower_bound(first, last, cend); 9510e3ece09SJunchao Zhang Fdi[i + 1] = lb2 - lb1; // row i length in Fdi 9520e3ece09SJunchao Zhang Foi[i + 1] = (Fi[i + 1] - Fi[i]) - Fdi[i + 1]; // row i length in Foi 9530e3ece09SJunchao Zhang } 9540e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9550e3ece09SJunchao Zhang Fdi[i + 1] += Fdi[i]; 9560e3ece09SJunchao Zhang Foi[i + 1] += Foi[i]; 9570e3ece09SJunchao Zhang } 9580e3ece09SJunchao Zhang 9590e3ece09SJunchao Zhang // Fill Fdj[] and Foj[], i.e., columns of Fd and Fo. Fdj[] are local, but Foj[] are not yet. 9600e3ece09SJunchao Zhang PetscInt Fdnz = Fdi[Fm], Fonz = Foi[Fm]; 9617b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost Fdj_h(NoInit("Fdj_h"), Fdnz), Foj_h(NoInit("Foj_h"), Fonz); 9620e3ece09SJunchao Zhang MatColIdxType *Fdj = Fdj_h.data(), *Foj = Foj_h.data(), gid; 9630e3ece09SJunchao Zhang 9640e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9650e3ece09SJunchao Zhang PetscInt nzLeft = F_NzLeft[i]; 9660e3ece09SJunchao Zhang PetscInt len = Fdi[i + 1] - Fdi[i]; // diag row len 9670e3ece09SJunchao Zhang for (PetscInt j = 0; j < Fi[i + 1] - Fi[i]; j++) { 9680e3ece09SJunchao Zhang gid = Fj[Fi[i] + j]; 9690e3ece09SJunchao Zhang if (j < nzLeft) { // left, in global 9700e3ece09SJunchao Zhang Foj[Foi[i] + j] = gid; 9710e3ece09SJunchao Zhang } else if (j < nzLeft + len) { // diag, in local 9720e3ece09SJunchao Zhang Fdj[Fdi[i] + j - nzLeft] = gid - cstart; 9730e3ece09SJunchao Zhang } else { // right, in global 9740e3ece09SJunchao Zhang Foj[Foi[i] + j - len] = gid; 9750e3ece09SJunchao Zhang } 9760e3ece09SJunchao Zhang } 9770e3ece09SJunchao Zhang } 9780e3ece09SJunchao Zhang PetscCall(PetscFree2(jbuf, Fj)); 9790e3ece09SJunchao Zhang PetscCall(PetscFree(Fi)); 9800e3ece09SJunchao Zhang 9810e3ece09SJunchao Zhang // Reduce global indices in Foj[] and garray1[] into local ones 9820e3ece09SJunchao Zhang PetscInt n2, *garray2; 9830e3ece09SJunchao Zhang PetscCall(ReduceTwoSetsOfGlobalIndices(n1, garray1, Fonz, Foj, &n2, &garray2, map)); 9840e3ece09SJunchao Zhang 9850e3ece09SJunchao Zhang // Record the plans built above, for reuse 9860e3ece09SJunchao Zhang PetscIntKokkosViewHost tmp(const_cast<PetscInt *>(irootloc), ioffset[niranks]); // irootloc[] is owned by ownerSF. We create a copy for safety 9877b8d4ba6SJunchao Zhang PetscIntKokkosViewHost irootloc_h(NoInit("irootloc_h"), ioffset[niranks]); 9880e3ece09SJunchao Zhang Kokkos::deep_copy(irootloc_h, tmp); 9890e3ece09SJunchao Zhang mm->sf = bcastSF; 9900e3ece09SJunchao Zhang mm->E_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), E_NzLeft_h); 9910e3ece09SJunchao Zhang mm->F_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), F_NzLeft_h); 9920e3ece09SJunchao Zhang mm->irootloc = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), irootloc_h); 9930e3ece09SJunchao Zhang mm->rowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), rowoffset_h); 9947b8d4ba6SJunchao Zhang mm->rootBuf = MatScalarKokkosView(NoInit("rootBuf"), nroots); 9957b8d4ba6SJunchao Zhang mm->leafBuf = MatScalarKokkosView(NoInit("leafBuf"), nleaves); 9960e3ece09SJunchao Zhang mm->garray = garray2; 9970e3ece09SJunchao Zhang mm->n = n2; 9980e3ece09SJunchao Zhang 9990e3ece09SJunchao Zhang // Output Fd and Fo in KokkosCsrMatrix format 10007b8d4ba6SJunchao Zhang MatScalarKokkosView Fda_d(NoInit("Fda_d"), Fdnz), Foa_d(NoInit("Foa_d"), Fonz); 10010e3ece09SJunchao Zhang MatRowMapKokkosView Fdi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdi_h); 10020e3ece09SJunchao Zhang MatColIdxKokkosView Fdj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdj_h); 10030e3ece09SJunchao Zhang MatRowMapKokkosView Foi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foi_h); 10040e3ece09SJunchao Zhang MatColIdxKokkosView Foj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foj_h); 10050e3ece09SJunchao Zhang 10060e3ece09SJunchao Zhang PetscCallCXX(mm->Fd = KokkosCsrMatrix("Fd", Fm, cend - cstart, Fdnz, Fda_d, Fdi_d, Fdj_d)); 10070e3ece09SJunchao Zhang PetscCallCXX(mm->Fo = KokkosCsrMatrix("Fo", Fm, n2, Fonz, Foa_d, Foi_d, Foj_d)); 10080e3ece09SJunchao Zhang 10090e3ece09SJunchao Zhang // Compute kernel launch parameters in merging E or splitting F 10100e3ece09SJunchao Zhang PetscInt teamSize, vectorLength, rowsPerTeam; 10110e3ece09SJunchao Zhang 10120e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 10130e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(mm->irootloc.extent(0), mm->rootBuf.extent(0), -1, teamSize, vectorLength, rowsPerTeam)); 10140e3ece09SJunchao Zhang mm->E_TeamSize = teamSize; 10150e3ece09SJunchao Zhang mm->E_VectorLength = vectorLength; 10160e3ece09SJunchao Zhang mm->E_RowsPerTeam = rowsPerTeam; 10170e3ece09SJunchao Zhang 10180e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 10190e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(Fm, Fnz, -1, teamSize, vectorLength, rowsPerTeam)); 10200e3ece09SJunchao Zhang mm->F_TeamSize = teamSize; 10210e3ece09SJunchao Zhang mm->F_VectorLength = vectorLength; 10220e3ece09SJunchao Zhang mm->F_RowsPerTeam = rowsPerTeam; 10230e3ece09SJunchao Zhang } else PetscCheck(reuse == MAT_REUSE_MATRIX, comm, PETSC_ERR_PLIB, "Unsupported MatReuse enum %d", reuse); 10240e3ece09SJunchao Zhang 10250e3ece09SJunchao Zhang // Sync E's value to device 10260e3ece09SJunchao Zhang akok->a_dual.sync_device(); 10270e3ece09SJunchao Zhang bkok->a_dual.sync_device(); 10280e3ece09SJunchao Zhang 10290e3ece09SJunchao Zhang // Handy aliases 10300e3ece09SJunchao Zhang const auto &Aa = akok->a_dual.view_device(); 10310e3ece09SJunchao Zhang const auto &Ba = bkok->a_dual.view_device(); 10320e3ece09SJunchao Zhang const auto &Ai = akok->i_dual.view_device(); 10330e3ece09SJunchao Zhang const auto &Bi = bkok->i_dual.view_device(); 10340e3ece09SJunchao Zhang 10350e3ece09SJunchao Zhang // Fetch the plans 10360e3ece09SJunchao Zhang PetscIntKokkosView &E_NzLeft = mm->E_NzLeft; 10370e3ece09SJunchao Zhang PetscSF &bcastSF = mm->sf; 10380e3ece09SJunchao Zhang MatScalarKokkosView &rootBuf = mm->rootBuf; 10390e3ece09SJunchao Zhang MatScalarKokkosView &leafBuf = mm->leafBuf; 10400e3ece09SJunchao Zhang PetscIntKokkosView &irootloc = mm->irootloc; 10410e3ece09SJunchao Zhang PetscIntKokkosView &rowoffset = mm->rowoffset; 10420e3ece09SJunchao Zhang 10430e3ece09SJunchao Zhang PetscInt teamSize = mm->E_TeamSize; 10440e3ece09SJunchao Zhang PetscInt vectorLength = mm->E_VectorLength; 10450e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->E_RowsPerTeam; 10460e3ece09SJunchao Zhang PetscInt workSets = (irootloc.extent(0) + rowsPerTeam - 1) / rowsPerTeam; 10470e3ece09SJunchao Zhang 10480e3ece09SJunchao Zhang // Copy rows in A/B of E to rootBuf, then bcast it to leafBuf 10490e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 1050d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(PetscGetKokkosExecutionSpace(), workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 10510e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 10520e3ece09SJunchao Zhang size_t r = t.league_rank() * rowsPerTeam + k; // r-th entry in irootloc[] 10530e3ece09SJunchao Zhang if (r < irootloc.extent(0)) { 10540e3ece09SJunchao Zhang PetscInt i = irootloc(r); // row i of E 10550e3ece09SJunchao Zhang PetscInt disp = rowoffset(r); 10560e3ece09SJunchao Zhang PetscInt alen = Ai(i + 1) - Ai(i); 10570e3ece09SJunchao Zhang PetscInt blen = Bi(i + 1) - Bi(i); 10580e3ece09SJunchao Zhang PetscInt nzleft = E_NzLeft(i); 10590e3ece09SJunchao Zhang 10600e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 10610e3ece09SJunchao Zhang if (j < nzleft) { // B left 10620e3ece09SJunchao Zhang rootBuf(disp + j) = Ba(Bi(i) + j); 10630e3ece09SJunchao Zhang } else if (j < nzleft + alen) { // diag A 10640e3ece09SJunchao Zhang rootBuf(disp + j) = Aa(Ai(i) + j - nzleft); 10650e3ece09SJunchao Zhang } else { // B right 10660e3ece09SJunchao Zhang rootBuf(disp + j) = Ba(Bi(i) + j - alen); 10670e3ece09SJunchao Zhang } 10680e3ece09SJunchao Zhang }); 10690e3ece09SJunchao Zhang } 10700e3ece09SJunchao Zhang }); 10710e3ece09SJunchao Zhang })); 10720e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(bcastSF, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, rootBuf.data(), PETSC_MEMTYPE_KOKKOS, leafBuf.data(), MPI_REPLACE)); 10730e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 10740e3ece09SJunchao Zhang } 10750e3ece09SJunchao Zhang 10760e3ece09SJunchao Zhang // To finish MatMPIAIJKokkosBcast. 10770e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosBcastEnd(Mat E, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AB *mm) 10780e3ece09SJunchao Zhang { 10790e3ece09SJunchao Zhang PetscFunctionBegin; 10800e3ece09SJunchao Zhang const auto &Fd = mm->Fd; 10810e3ece09SJunchao Zhang const auto &Fo = mm->Fo; 10820e3ece09SJunchao Zhang const auto &Fdi = Fd.graph.row_map; 10830e3ece09SJunchao Zhang const auto &Foi = Fo.graph.row_map; 10840e3ece09SJunchao Zhang auto &Fda = Fd.values; 10850e3ece09SJunchao Zhang auto &Foa = Fo.values; 10860e3ece09SJunchao Zhang auto Fm = Fd.numRows(); 10870e3ece09SJunchao Zhang 10880e3ece09SJunchao Zhang PetscIntKokkosView &F_NzLeft = mm->F_NzLeft; 10890e3ece09SJunchao Zhang PetscSF &bcastSF = mm->sf; 10900e3ece09SJunchao Zhang MatScalarKokkosView &rootBuf = mm->rootBuf; 10910e3ece09SJunchao Zhang MatScalarKokkosView &leafBuf = mm->leafBuf; 10920e3ece09SJunchao Zhang PetscInt teamSize = mm->F_TeamSize; 10930e3ece09SJunchao Zhang PetscInt vectorLength = mm->F_VectorLength; 10940e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->F_RowsPerTeam; 10950e3ece09SJunchao Zhang PetscInt workSets = (Fm + rowsPerTeam - 1) / rowsPerTeam; 10960e3ece09SJunchao Zhang 10970e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(bcastSF, MPIU_SCALAR, rootBuf.data(), leafBuf.data(), MPI_REPLACE)); 10980e3ece09SJunchao Zhang 10990e3ece09SJunchao Zhang // Update Fda and Foa with new data in leafBuf (as if it is Fa) 11000e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 1101d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(PetscGetKokkosExecutionSpace(), workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 11020e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 11030e3ece09SJunchao Zhang PetscInt i = t.league_rank() * rowsPerTeam + k; // i-th row in F 11040e3ece09SJunchao Zhang if (i < Fm) { 11050e3ece09SJunchao Zhang PetscInt nzLeft = F_NzLeft(i); 11060e3ece09SJunchao Zhang PetscInt alen = Fdi(i + 1) - Fdi(i); 11070e3ece09SJunchao Zhang PetscInt blen = Foi(i + 1) - Foi(i); 11080e3ece09SJunchao Zhang PetscInt Fii = Fdi(i) + Foi(i); 11090e3ece09SJunchao Zhang 11100e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 11110e3ece09SJunchao Zhang PetscScalar val = leafBuf(Fii + j); 11120e3ece09SJunchao Zhang if (j < nzLeft) { // left 11130e3ece09SJunchao Zhang Foa(Foi(i) + j) = val; 11140e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { // diag 11150e3ece09SJunchao Zhang Fda(Fdi(i) + j - nzLeft) = val; 11160e3ece09SJunchao Zhang } else { // right 11170e3ece09SJunchao Zhang Foa(Foi(i) + j - alen) = val; 11180e3ece09SJunchao Zhang } 11190e3ece09SJunchao Zhang }); 11200e3ece09SJunchao Zhang } 11210e3ece09SJunchao Zhang }); 11220e3ece09SJunchao Zhang })); 11230e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 11240e3ece09SJunchao Zhang } 11250e3ece09SJunchao Zhang 11260e3ece09SJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AtB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AtB *mm) 11270e3ece09SJunchao Zhang { 11280e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 11290e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 11300e3ece09SJunchao Zhang KokkosCsrMatrix Adt, Aot, Ad, Ao, Bd, Bo; 11310e3ece09SJunchao Zhang PetscInt cstart, cend; 11320e3ece09SJunchao Zhang MPI_Comm comm; 11330e3ece09SJunchao Zhang 11340e3ece09SJunchao Zhang PetscFunctionBegin; 11350e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 11360e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->A, &Adt)); 11370e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->B, &Aot)); 11380e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 11390e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 11400e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 11410e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 11420e3ece09SJunchao Zhang 11430e3ece09SJunchao Zhang // TODO: add command line options to select spgemm algorithms 11440e3ece09SJunchao Zhang auto spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_DEFAULT; // default is TPL if enabled, otherwise KK 11450e3ece09SJunchao Zhang 11460e3ece09SJunchao Zhang // CUDA-10.2's spgemm has bugs. We prefer the SpGEMMreuse APIs introduced in cuda-11.4 11470e3ece09SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 11480e3ece09SJunchao Zhang #if PETSC_PKG_CUDA_VERSION_LT(11, 4, 0) 11490e3ece09SJunchao Zhang spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_KK; 1150f0e6e2d1SJunchao Zhang #endif 11510e3ece09SJunchao Zhang #endif 11520e3ece09SJunchao Zhang 11530e3ece09SJunchao Zhang PetscCallCXX(mm->kh1.create_spgemm_handle(spgemm_alg)); 11540e3ece09SJunchao Zhang PetscCallCXX(mm->kh2.create_spgemm_handle(spgemm_alg)); 11550e3ece09SJunchao Zhang PetscCallCXX(mm->kh3.create_spgemm_handle(spgemm_alg)); 11560e3ece09SJunchao Zhang PetscCallCXX(mm->kh4.create_spgemm_handle(spgemm_alg)); 11570e3ece09SJunchao Zhang 11580e3ece09SJunchao Zhang // Aot * (B's diag + B's off-diag) 11590e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh3, Aot, false, Bd, false, mm->C3)); 11600e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh4, Aot, false, Bo, false, mm->C4)); 11610e3ece09SJunchao Zhang // KK spgemm_symbolic() only populates the result's row map, but not its columns. 11620e3ece09SJunchao Zhang // TODO: Remove the fake spgemm_numeric() after KK fixed this problem. 11630e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Aot, false, Bd, false, mm->C3)); 11640e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Aot, false, Bo, false, mm->C4)); 11650e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 1166d326c3f1SJunchao Zhang 11670e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C3)); 11680e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C4)); 11690e3ece09SJunchao Zhang #endif 11700e3ece09SJunchao Zhang 11710e3ece09SJunchao Zhang // Reduce E (i.e., C3 and C4)'s rows to form F, and overlap the communication 11727b8d4ba6SJunchao Zhang PetscIntKokkosViewHost map_h(NoInit("map_h"), bmpi->B->cmap->n); 11730e3ece09SJunchao Zhang PetscCall(MatGetOwnershipRangeColumn(B, &cstart, &cend)); 11740e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceBegin(comm, mm->C3, mm->C4, cstart, cend, bmpi->garray, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 11750e3ece09SJunchao Zhang 11760e3ece09SJunchao Zhang // Adt * (B's diag + B's off-diag) 11770e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh1, Adt, false, Bd, false, mm->C1)); 11780e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 11790e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Adt, false, Bd, false, mm->C1)); 11800e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 11810e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 11820e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C1)); 11830e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C2_mid)); 11840e3ece09SJunchao Zhang #endif 11850e3ece09SJunchao Zhang 11860e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceEnd(comm, mm->C3, mm->C4, cstart, cend, bmpi->garray, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 11870e3ece09SJunchao Zhang 11880e3ece09SJunchao Zhang // Create C2, which shares a, i arrays with C2_mid, but with new column indices and potentially larger column size 11897b8d4ba6SJunchao Zhang MatColIdxKokkosView oldj = mm->C2_mid.graph.entries, newj(NoInit("j"), oldj.extent(0)); 11900e3ece09SJunchao Zhang PetscIntKokkosView map = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), map_h); 1191d326c3f1SJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, oldj.extent(0)), KOKKOS_LAMBDA(const PetscInt i) { newj(i) = map(oldj(i)); })); 11920e3ece09SJunchao Zhang PetscCallCXX(mm->C2 = KokkosCsrMatrix("C2", mm->C2_mid.numRows(), mm->n /*new column size*/, mm->C2_mid.nnz(), mm->C2_mid.values, mm->C2_mid.graph.row_map, newj)); 11930e3ece09SJunchao Zhang 11940e3ece09SJunchao Zhang // C = (C1+Fd, C2+Fo) 11950e3ece09SJunchao Zhang PetscCallCXX(mm->kh1.create_spadd_handle(true)); // C1, Fd are sorted 11960e3ece09SJunchao Zhang PetscCallCXX(mm->kh2.create_spadd_handle(true)); // C2, Fo are sorted 11970e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh1, mm->C1, mm->Fd, mm->Cd)); 11980e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh2, mm->C2, mm->Fo, mm->Co)); 11990e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->Fd, mm->Cd)); 12000e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->Fo, mm->Co)); 12010e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 12020e3ece09SJunchao Zhang } 12030e3ece09SJunchao Zhang 12040e3ece09SJunchao Zhang static PetscErrorCode MatProductNumeric_MPIAIJKokkos_AtB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AtB *mm) 12050e3ece09SJunchao Zhang { 12060e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 12070e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 12080e3ece09SJunchao Zhang KokkosCsrMatrix Adt, Aot, Bd, Bo; 12090e3ece09SJunchao Zhang MPI_Comm comm; 12100e3ece09SJunchao Zhang 12110e3ece09SJunchao Zhang PetscFunctionBegin; 12120e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 12130e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->A, &Adt)); 12140e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->B, &Aot)); 12150e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 12160e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 12170e3ece09SJunchao Zhang 12180e3ece09SJunchao Zhang // Aot * (B's diag + B's off-diag) 12190e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Aot, false, Bd, false, mm->C3)); 12200e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Aot, false, Bo, false, mm->C4)); 12210e3ece09SJunchao Zhang 12220e3ece09SJunchao Zhang // Reduce E (i.e., C3 and C4)'s rows to form F, and overlap the communication 12230e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceBegin(comm, mm->C3, mm->C4, 0, 0, NULL, NULL, MAT_REUSE_MATRIX, NULL, mm)); 12240e3ece09SJunchao Zhang 12250e3ece09SJunchao Zhang // Adt * (B's diag + B's off-diag) 12260e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Adt, false, Bd, false, mm->C1)); 12270e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 12280e3ece09SJunchao Zhang 12290e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceEnd(comm, mm->C3, mm->C4, 0, 0, NULL, NULL, MAT_REUSE_MATRIX, NULL, mm)); 12300e3ece09SJunchao Zhang 12310e3ece09SJunchao Zhang // C = (C1+Fd, C2+Fo) 12320e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->Fd, mm->Cd)); 12330e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->Fo, mm->Co)); 12340e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 12350e3ece09SJunchao Zhang } 1236f0e6e2d1SJunchao Zhang 1237076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AB - AB flavor of MatProductSymbolic_MPIAIJKokkos 1238076ba34aSJunchao Zhang 1239076ba34aSJunchao Zhang Input Parameters: 1240076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 1241076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 1242076ba34aSJunchao Zhang . B - an MPIAIJKOKKOS matrix 1243076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data when computing AB. Persist from symbolic to numeric operations. 1244076ba34aSJunchao Zhang */ 1245d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AB *mm) 1246d71ae5a4SJacob Faibussowitsch { 12470e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 12480e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 12490e3ece09SJunchao Zhang KokkosCsrMatrix Ad, Ao, Bd, Bo; 1250076ba34aSJunchao Zhang 1251076ba34aSJunchao Zhang PetscFunctionBegin; 12520e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 12530e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 12540e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 12550e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 12560e3ece09SJunchao Zhang 12570e3ece09SJunchao Zhang // TODO: add command line options to select spgemm algorithms 12580e3ece09SJunchao Zhang auto spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_DEFAULT; // default is TPL if enabled, otherwise KK 12590e3ece09SJunchao Zhang 12600e3ece09SJunchao Zhang // CUDA-10.2's spgemm has bugs. We prefer the SpGEMMreuse APIs introduced in cuda-11.4 12610e3ece09SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 12620e3ece09SJunchao Zhang #if PETSC_PKG_CUDA_VERSION_LT(11, 4, 0) 12630e3ece09SJunchao Zhang spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_KK; 12640e3ece09SJunchao Zhang #endif 1265f0e6e2d1SJunchao Zhang #endif 1266f0e6e2d1SJunchao Zhang 12670e3ece09SJunchao Zhang mm->kh1.create_spgemm_handle(spgemm_alg); 12680e3ece09SJunchao Zhang mm->kh2.create_spgemm_handle(spgemm_alg); 12690e3ece09SJunchao Zhang mm->kh3.create_spgemm_handle(spgemm_alg); 12700e3ece09SJunchao Zhang mm->kh4.create_spgemm_handle(spgemm_alg); 1271076ba34aSJunchao Zhang 12720e3ece09SJunchao Zhang // Bcast B's rows to form F, and overlap the communication 12737b8d4ba6SJunchao Zhang PetscIntKokkosViewHost map_h(NoInit("map_h"), bmpi->B->cmap->n); 12740e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastBegin(B, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1275076ba34aSJunchao Zhang 12760e3ece09SJunchao Zhang // A's diag * (B's diag + B's off-diag) 12770e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh1, Ad, false, Bd, false, mm->C1)); 12780e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); // C2 aliases with C2_mid, except with new column indices 12790e3ece09SJunchao Zhang // KK spgemm_symbolic() only populates the result's row map, but not its columns. 12800e3ece09SJunchao Zhang // TODO: Remove the fake spgemm_numeric() after KK fixed this problem. 12810e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Ad, false, Bd, false, mm->C1)); 12820e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); 12830e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 12840e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C1)); 12850e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C2_mid)); 12860e3ece09SJunchao Zhang #endif 1287076ba34aSJunchao Zhang 12880e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastEnd(B, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1289076ba34aSJunchao Zhang 12900e3ece09SJunchao Zhang // A's off-diag * (F's diag + F's off-diag) 12910e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 12920e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 12930e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 12940e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 12950e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 12960e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C3)); 12970e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C4)); 12980e3ece09SJunchao Zhang #endif 1299076ba34aSJunchao Zhang 13000e3ece09SJunchao Zhang // Create C2, which shares a, i arrays with C2_mid, but with new column indices and potentially larger column size 13017b8d4ba6SJunchao Zhang MatColIdxKokkosView oldj = mm->C2_mid.graph.entries, newj(NoInit("j"), oldj.extent(0)); 13020e3ece09SJunchao Zhang PetscIntKokkosView map = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), map_h); 1303d326c3f1SJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, oldj.extent(0)), KOKKOS_LAMBDA(const PetscInt i) { newj(i) = map(oldj(i)); })); 13040e3ece09SJunchao Zhang mm->C2 = KokkosCsrMatrix("C2", mm->C2_mid.numRows(), mm->n /*new column size*/, mm->C2_mid.nnz(), mm->C2_mid.values, mm->C2_mid.graph.row_map, newj); 13050e3ece09SJunchao Zhang 13060e3ece09SJunchao Zhang // C = (Cd, Co) = (C1+C3, C2+C4) 13070e3ece09SJunchao Zhang mm->kh1.create_spadd_handle(true); // C1, C3 are sorted 13080e3ece09SJunchao Zhang mm->kh2.create_spadd_handle(true); // C2, C4 are sorted 13090e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh1, mm->C1, mm->C3, mm->Cd)); 13100e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh2, mm->C2, mm->C4, mm->Co)); 13110e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->C3, mm->Cd)); 13120e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->C4, mm->Co)); 13133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1314076ba34aSJunchao Zhang } 1315076ba34aSJunchao Zhang 13160e3ece09SJunchao Zhang static PetscErrorCode MatProductNumeric_MPIAIJKokkos_AB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AB *mm) 1317d71ae5a4SJacob Faibussowitsch { 13180e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 13190e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 13200e3ece09SJunchao Zhang KokkosCsrMatrix Ad, Ao, Bd, Bo; 1321076ba34aSJunchao Zhang 1322076ba34aSJunchao Zhang PetscFunctionBegin; 13230e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 13240e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 13250e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 13260e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 1327076ba34aSJunchao Zhang 13280e3ece09SJunchao Zhang // Bcast B's rows to form F, and overlap the communication 13290e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastBegin(B, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1330076ba34aSJunchao Zhang 13310e3ece09SJunchao Zhang // A's diag * (B's diag + B's off-diag) 13320e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Ad, false, Bd, false, mm->C1)); 13330e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); 1334076ba34aSJunchao Zhang 13350e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastEnd(B, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1336076ba34aSJunchao Zhang 13370e3ece09SJunchao Zhang // A's off-diag * (F's diag + F's off-diag) 13380e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 13390e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 13400e3ece09SJunchao Zhang 13410e3ece09SJunchao Zhang // C = (Cd, Co) = (C1+C3, C2+C4) 13420e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->C3, mm->Cd)); 13430e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->C4, mm->Co)); 13443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1345076ba34aSJunchao Zhang } 1346076ba34aSJunchao Zhang 134766976f2fSJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJKokkos(Mat C) 1348d71ae5a4SJacob Faibussowitsch { 13490e3ece09SJunchao Zhang Mat_MPIAIJ *cmpi = static_cast<Mat_MPIAIJ *>(C->data); 13500e3ece09SJunchao Zhang Mat_Product *product; 13510e3ece09SJunchao Zhang MatProductData_MPIAIJKokkos *pdata; 1352076ba34aSJunchao Zhang MatProductType ptype; 13530e3ece09SJunchao Zhang Mat A, B; 1354076ba34aSJunchao Zhang 1355076ba34aSJunchao Zhang PetscFunctionBegin; 13560e3ece09SJunchao Zhang MatCheckProduct(C, 1); // make sure C is a product 13570e3ece09SJunchao Zhang product = C->product; 13580e3ece09SJunchao Zhang pdata = static_cast<MatProductData_MPIAIJKokkos *>(product->data); 1359076ba34aSJunchao Zhang ptype = product->type; 1360076ba34aSJunchao Zhang A = product->A; 1361076ba34aSJunchao Zhang B = product->B; 1362076ba34aSJunchao Zhang 13630e3ece09SJunchao Zhang // See if numeric has already been done in symbolic (e.g., user calls MatMatMult(A,B,MAT_INITIAL_MATRIX,..,C)). 13640e3ece09SJunchao Zhang // If yes, skip the numeric, but reset the flag so that next time when user calls MatMatMult(E,F,MAT_REUSE_MATRIX,..,C), 13650e3ece09SJunchao Zhang // we still do numeric. 13660e3ece09SJunchao Zhang if (pdata->reusesym) { // numeric reuses results from symbolic 13670e3ece09SJunchao Zhang pdata->reusesym = PETSC_FALSE; 13683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1369076ba34aSJunchao Zhang } 1370076ba34aSJunchao Zhang 1371076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 13720e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AB(product, A, B, pdata->mmAB)); 1373076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 13740e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AtB(product, A, B, pdata->mmAtB)); 13750e3ece09SJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { // BtAB, computed by Z = AB; C= BtZ 13760e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AB(product, A, B, pdata->mmAB)); 13770e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AtB(product, B, pdata->Z, pdata->mmAtB)); 1378076ba34aSJunchao Zhang } 13790e3ece09SJunchao Zhang 13800e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(cmpi->A)); // mark that A, B on device are modified 13810e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(cmpi->B)); 13823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1383076ba34aSJunchao Zhang } 1384076ba34aSJunchao Zhang 138566976f2fSJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_MPIAIJKokkos(Mat C) 1386d71ae5a4SJacob Faibussowitsch { 1387076ba34aSJunchao Zhang Mat A, B; 13880e3ece09SJunchao Zhang Mat_Product *product; 1389076ba34aSJunchao Zhang MatProductType ptype; 13900e3ece09SJunchao Zhang MatProductData_MPIAIJKokkos *pdata; 1391076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 13920e3ece09SJunchao Zhang PetscInt m, n, M, N; 13930e3ece09SJunchao Zhang Mat Cd, Co; 13940e3ece09SJunchao Zhang MPI_Comm comm; 1395076ba34aSJunchao Zhang 1396076ba34aSJunchao Zhang PetscFunctionBegin; 13970e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 1398076ba34aSJunchao Zhang MatCheckProduct(C, 1); 13990e3ece09SJunchao Zhang product = C->product; 14000e3ece09SJunchao Zhang PetscCheck(!product->data, comm, PETSC_ERR_PLIB, "Product data not empty"); 1401076ba34aSJunchao Zhang ptype = product->type; 1402076ba34aSJunchao Zhang A = product->A; 1403076ba34aSJunchao Zhang B = product->B; 1404076ba34aSJunchao Zhang 1405076ba34aSJunchao Zhang switch (ptype) { 14069371c9d4SSatish Balay case MATPRODUCT_AB: 14079371c9d4SSatish Balay m = A->rmap->n; 14089371c9d4SSatish Balay n = B->cmap->n; 14099371c9d4SSatish Balay M = A->rmap->N; 14109371c9d4SSatish Balay N = B->cmap->N; 14119371c9d4SSatish Balay break; 14129371c9d4SSatish Balay case MATPRODUCT_AtB: 14139371c9d4SSatish Balay m = A->cmap->n; 14149371c9d4SSatish Balay n = B->cmap->n; 14159371c9d4SSatish Balay M = A->cmap->N; 14169371c9d4SSatish Balay N = B->cmap->N; 14179371c9d4SSatish Balay break; 14189371c9d4SSatish Balay case MATPRODUCT_PtAP: 14199371c9d4SSatish Balay m = B->cmap->n; 14209371c9d4SSatish Balay n = B->cmap->n; 14219371c9d4SSatish Balay M = B->cmap->N; 14229371c9d4SSatish Balay N = B->cmap->N; 14239371c9d4SSatish Balay break; /* BtAB */ 1424d71ae5a4SJacob Faibussowitsch default: 14250e3ece09SJunchao Zhang SETERRQ(comm, PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 1426076ba34aSJunchao Zhang } 1427076ba34aSJunchao Zhang 14289566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 14299566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 14309566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 14319566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 1432076ba34aSJunchao Zhang 14330e3ece09SJunchao Zhang pdata = new MatProductData_MPIAIJKokkos(); 14340e3ece09SJunchao Zhang pdata->reusesym = product->api_user; 1435076ba34aSJunchao Zhang 1436076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 14370e3ece09SJunchao Zhang auto mmAB = new MatMatStruct_AB(); 14380e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AB(product, A, B, mmAB)); 14390e3ece09SJunchao Zhang mm = pdata->mmAB = mmAB; 1440076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 14410e3ece09SJunchao Zhang auto mmAtB = new MatMatStruct_AtB(); 14420e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AtB(product, A, B, mmAtB)); 14430e3ece09SJunchao Zhang mm = pdata->mmAtB = mmAtB; 14440e3ece09SJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { // C = BtAB, computed as Z = AB; C= BtZ 14450e3ece09SJunchao Zhang Mat Zd, Zo, Z; // Zd, Zo are owned by pdata->Z 14460e3ece09SJunchao Zhang 14470e3ece09SJunchao Zhang auto mmAB = new MatMatStruct_AB(); 14480e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AB(product, A, B, mmAB)); // Z stored as mmAB->{Cd, Co} 14490e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mmAB->Cd, &Zd)); 14500e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mmAB->Co, &Zo)); 14510e3ece09SJunchao Zhang pdata->mmAB = mmAB; 14520e3ece09SJunchao Zhang 14530e3ece09SJunchao Zhang m = A->rmap->n; // Z's layout 14540e3ece09SJunchao Zhang n = B->cmap->n; 14550e3ece09SJunchao Zhang M = A->rmap->N; 14560e3ece09SJunchao Zhang N = B->cmap->N; 14570e3ece09SJunchao Zhang PetscCall(MatCreate(comm, &Z)); 14580e3ece09SJunchao Zhang PetscCall(MatSetSizes(Z, m, n, M, N)); 14590e3ece09SJunchao Zhang PetscCall(PetscLayoutSetUp(Z->rmap)); 14600e3ece09SJunchao Zhang PetscCall(PetscLayoutSetUp(Z->cmap)); 14610e3ece09SJunchao Zhang PetscCall(MatSetType(Z, MATMPIAIJKOKKOS)); 14620e3ece09SJunchao Zhang PetscCall(MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Z, Zd, Zo, mmAB->garray)); 14630e3ece09SJunchao Zhang 14640e3ece09SJunchao Zhang auto mmAtB = new MatMatStruct_AtB(); 14650e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AtB(product, B, Z, mmAtB)); // final result C stored as mmAtB->{Cd, Co} 14660e3ece09SJunchao Zhang 14670e3ece09SJunchao Zhang pdata->Z = Z; // give ownership to pdata 14680e3ece09SJunchao Zhang mm = pdata->mmAtB = mmAtB; 1469076ba34aSJunchao Zhang } 14700e3ece09SJunchao Zhang 14710e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mm->Cd, &Cd)); 14720e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mm->Co, &Co)); 14730e3ece09SJunchao Zhang PetscCall(MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(C, Cd, Co, mm->garray)); 14740e3ece09SJunchao Zhang 14750e3ece09SJunchao Zhang C->product->data = pdata; 1476076ba34aSJunchao Zhang C->product->destroy = MatProductDataDestroy_MPIAIJKokkos; 1477076ba34aSJunchao Zhang C->ops->productnumeric = MatProductNumeric_MPIAIJKokkos; 14783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1479076ba34aSJunchao Zhang } 1480076ba34aSJunchao Zhang 1481d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJKokkos(Mat mat) 1482d71ae5a4SJacob Faibussowitsch { 1483076ba34aSJunchao Zhang Mat_Product *product = mat->product; 1484076ba34aSJunchao Zhang PetscBool match = PETSC_FALSE; 1485076ba34aSJunchao Zhang PetscBool usecpu = PETSC_FALSE; 1486076ba34aSJunchao Zhang 1487076ba34aSJunchao Zhang PetscFunctionBegin; 1488076ba34aSJunchao Zhang MatCheckProduct(mat, 1); 148948a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 1490076ba34aSJunchao Zhang if (match) { /* we can always fallback to the CPU if requested */ 1491076ba34aSJunchao Zhang switch (product->type) { 1492076ba34aSJunchao Zhang case MATPRODUCT_AB: 1493076ba34aSJunchao Zhang if (product->api_user) { 1494d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 14959566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 1496d0609cedSBarry Smith PetscOptionsEnd(); 1497076ba34aSJunchao Zhang } else { 1498d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 14999566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 1500d0609cedSBarry Smith PetscOptionsEnd(); 1501076ba34aSJunchao Zhang } 1502076ba34aSJunchao Zhang break; 1503076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1504076ba34aSJunchao Zhang if (product->api_user) { 1505d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 15069566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 1507d0609cedSBarry Smith PetscOptionsEnd(); 1508076ba34aSJunchao Zhang } else { 1509d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 15109566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 1511d0609cedSBarry Smith PetscOptionsEnd(); 1512076ba34aSJunchao Zhang } 1513076ba34aSJunchao Zhang break; 1514076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1515076ba34aSJunchao Zhang if (product->api_user) { 1516d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 15179566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 1518d0609cedSBarry Smith PetscOptionsEnd(); 1519076ba34aSJunchao Zhang } else { 1520d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 15219566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 1522d0609cedSBarry Smith PetscOptionsEnd(); 1523076ba34aSJunchao Zhang } 1524076ba34aSJunchao Zhang break; 1525d71ae5a4SJacob Faibussowitsch default: 1526d71ae5a4SJacob Faibussowitsch break; 1527076ba34aSJunchao Zhang } 1528076ba34aSJunchao Zhang match = (PetscBool)!usecpu; 1529076ba34aSJunchao Zhang } 1530076ba34aSJunchao Zhang if (match) { 1531076ba34aSJunchao Zhang switch (product->type) { 1532076ba34aSJunchao Zhang case MATPRODUCT_AB: 1533076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1534d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 1535d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJKokkos; 1536d71ae5a4SJacob Faibussowitsch break; 1537d71ae5a4SJacob Faibussowitsch default: 1538d71ae5a4SJacob Faibussowitsch break; 1539076ba34aSJunchao Zhang } 1540076ba34aSJunchao Zhang } 1541076ba34aSJunchao Zhang /* fallback to MPIAIJ ops */ 154248a46eb9SPierre Jolivet if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 15433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1544076ba34aSJunchao Zhang } 1545076ba34aSJunchao Zhang 15462c4ab24aSJunchao Zhang // Mirror of MatCOOStruct_MPIAIJ on device 15472c4ab24aSJunchao Zhang struct MatCOOStruct_MPIAIJKokkos { 15482c4ab24aSJunchao Zhang PetscCount n; 15492c4ab24aSJunchao Zhang PetscSF sf; 15502c4ab24aSJunchao Zhang PetscCount Annz, Bnnz; 15512c4ab24aSJunchao Zhang PetscCount Annz2, Bnnz2; 15522c4ab24aSJunchao Zhang PetscCountKokkosView Ajmap1, Aperm1; 15532c4ab24aSJunchao Zhang PetscCountKokkosView Bjmap1, Bperm1; 15542c4ab24aSJunchao Zhang PetscCountKokkosView Aimap2, Ajmap2, Aperm2; 15552c4ab24aSJunchao Zhang PetscCountKokkosView Bimap2, Bjmap2, Bperm2; 15562c4ab24aSJunchao Zhang PetscCountKokkosView Cperm1; 15572c4ab24aSJunchao Zhang MatScalarKokkosView sendbuf, recvbuf; 15582c4ab24aSJunchao Zhang 1559*92896123SJunchao Zhang MatCOOStruct_MPIAIJKokkos(const MatCOOStruct_MPIAIJ *coo_h) 15602c4ab24aSJunchao Zhang { 1561*92896123SJunchao Zhang auto &exec = PetscGetKokkosExecutionSpace(); 1562*92896123SJunchao Zhang 1563*92896123SJunchao Zhang n = coo_h->n; 1564*92896123SJunchao Zhang sf = coo_h->sf; 1565*92896123SJunchao Zhang Annz = coo_h->Annz; 1566*92896123SJunchao Zhang Bnnz = coo_h->Bnnz; 1567*92896123SJunchao Zhang Annz2 = coo_h->Annz2; 1568*92896123SJunchao Zhang Bnnz2 = coo_h->Bnnz2; 1569*92896123SJunchao Zhang Ajmap1 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Ajmap1, coo_h->Annz + 1)); 1570*92896123SJunchao Zhang Aperm1 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Aperm1, coo_h->Atot1)); 1571*92896123SJunchao Zhang Bjmap1 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Bjmap1, coo_h->Bnnz + 1)); 1572*92896123SJunchao Zhang Bperm1 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Bperm1, coo_h->Btot1)); 1573*92896123SJunchao Zhang Aimap2 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Aimap2, coo_h->Annz2)); 1574*92896123SJunchao Zhang Ajmap2 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Ajmap2, coo_h->Annz2 + 1)); 1575*92896123SJunchao Zhang Aperm2 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Aperm2, coo_h->Atot2)); 1576*92896123SJunchao Zhang Bimap2 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Bimap2, coo_h->Bnnz2)); 1577*92896123SJunchao Zhang Bjmap2 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Bjmap2, coo_h->Bnnz2 + 1)); 1578*92896123SJunchao Zhang Bperm2 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Bperm2, coo_h->Btot2)); 1579*92896123SJunchao Zhang Cperm1 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Cperm1, coo_h->sendlen)); 1580*92896123SJunchao Zhang sendbuf = Kokkos::create_mirror_view(Kokkos::WithoutInitializing, exec, MatScalarKokkosViewHost(coo_h->sendbuf, coo_h->sendlen)); 1581*92896123SJunchao Zhang recvbuf = Kokkos::create_mirror_view(Kokkos::WithoutInitializing, exec, MatScalarKokkosViewHost(coo_h->recvbuf, coo_h->recvlen)); 15822c4ab24aSJunchao Zhang PetscCallVoid(PetscObjectReference((PetscObject)sf)); 15832c4ab24aSJunchao Zhang } 15842c4ab24aSJunchao Zhang 15852c4ab24aSJunchao Zhang ~MatCOOStruct_MPIAIJKokkos() { PetscCallVoid(PetscSFDestroy(&sf)); } 15862c4ab24aSJunchao Zhang }; 15872c4ab24aSJunchao Zhang 15882c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJKokkos(void *data) 15892c4ab24aSJunchao Zhang { 15902c4ab24aSJunchao Zhang PetscFunctionBegin; 15912c4ab24aSJunchao Zhang PetscCallCXX(delete static_cast<MatCOOStruct_MPIAIJKokkos *>(data)); 15922c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 15932c4ab24aSJunchao Zhang } 15942c4ab24aSJunchao Zhang 1595d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetPreallocationCOO_MPIAIJKokkos(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 1596d71ae5a4SJacob Faibussowitsch { 15972c4ab24aSJunchao Zhang PetscContainer container_h, container_d; 15982c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo_h; 15992c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJKokkos *coo_d; 160042550becSJunchao Zhang 160142550becSJunchao Zhang PetscFunctionBegin; 160230203840SJunchao Zhang PetscCall(MatSetPreallocationCOO_MPIAIJ(mat, coo_n, coo_i, coo_j)); /* mpiaij->A,B's type is set to seqaijkokkos */ 1603cbc6b225SStefano Zampini mat->preallocated = PETSC_TRUE; 16049566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 16059566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 16069566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat)); 16072c4ab24aSJunchao Zhang 16082c4ab24aSJunchao Zhang // Copy the COO struct to device 16092c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container_h)); 16102c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container_h, (void **)&coo_h)); 16112c4ab24aSJunchao Zhang PetscCallCXX(coo_d = new MatCOOStruct_MPIAIJKokkos(coo_h)); 16122c4ab24aSJunchao Zhang 16132c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 16142c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container_d)); 16152c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container_d, coo_d)); 16162c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container_d, MatCOOStructDestroy_MPIAIJKokkos)); 16172c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Device", (PetscObject)container_d)); 16182c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container_d)); 16193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 162042550becSJunchao Zhang } 162142550becSJunchao Zhang 1622d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJKokkos(Mat mat, const PetscScalar v[], InsertMode imode) 1623d71ae5a4SJacob Faibussowitsch { 1624394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 162542550becSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 162642550becSJunchao Zhang MatScalarKokkosView Aa, Ba; 1627394ed5ebSJunchao Zhang MatScalarKokkosView v1; 162842550becSJunchao Zhang PetscMemType memtype; 16292c4ab24aSJunchao Zhang PetscContainer container; 16302c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJKokkos *coo; 1631*92896123SJunchao Zhang Kokkos::DefaultExecutionSpace &exec = PetscGetKokkosExecutionSpace(); 163242550becSJunchao Zhang 163342550becSJunchao Zhang PetscFunctionBegin; 16342c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Device", (PetscObject *)&container)); 16352c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 16362c4ab24aSJunchao Zhang 16372c4ab24aSJunchao Zhang const auto &n = coo->n; 16382c4ab24aSJunchao Zhang const auto &Annz = coo->Annz; 16392c4ab24aSJunchao Zhang const auto &Annz2 = coo->Annz2; 16402c4ab24aSJunchao Zhang const auto &Bnnz = coo->Bnnz; 16412c4ab24aSJunchao Zhang const auto &Bnnz2 = coo->Bnnz2; 16422c4ab24aSJunchao Zhang const auto &vsend = coo->sendbuf; 16432c4ab24aSJunchao Zhang const auto &v2 = coo->recvbuf; 16442c4ab24aSJunchao Zhang const auto &Ajmap1 = coo->Ajmap1; 16452c4ab24aSJunchao Zhang const auto &Ajmap2 = coo->Ajmap2; 16462c4ab24aSJunchao Zhang const auto &Aimap2 = coo->Aimap2; 16472c4ab24aSJunchao Zhang const auto &Bjmap1 = coo->Bjmap1; 16482c4ab24aSJunchao Zhang const auto &Bjmap2 = coo->Bjmap2; 16492c4ab24aSJunchao Zhang const auto &Bimap2 = coo->Bimap2; 16502c4ab24aSJunchao Zhang const auto &Aperm1 = coo->Aperm1; 16512c4ab24aSJunchao Zhang const auto &Aperm2 = coo->Aperm2; 16522c4ab24aSJunchao Zhang const auto &Bperm1 = coo->Bperm1; 16532c4ab24aSJunchao Zhang const auto &Bperm2 = coo->Bperm2; 16542c4ab24aSJunchao Zhang const auto &Cperm1 = coo->Cperm1; 16552c4ab24aSJunchao Zhang 16569566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(v, &memtype)); /* Return PETSC_MEMTYPE_HOST when v is NULL */ 165742550becSJunchao Zhang if (PetscMemTypeHost(memtype)) { /* If user gave v[] in host, we need to copy it to device if any */ 1658*92896123SJunchao Zhang v1 = Kokkos::create_mirror_view_and_copy(exec, MatScalarKokkosViewHost((PetscScalar *)v, n)); 165942550becSJunchao Zhang } else { 16602c4ab24aSJunchao Zhang v1 = MatScalarKokkosView((PetscScalar *)v, n); /* Directly use v[]'s memory */ 166142550becSJunchao Zhang } 166242550becSJunchao Zhang 166342550becSJunchao Zhang if (imode == INSERT_VALUES) { 16649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosViewWrite(A, &Aa)); /* write matrix values */ 16659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosViewWrite(B, &Ba)); 1666394ed5ebSJunchao Zhang } else { 16679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosView(A, &Aa)); /* read & write matrix values */ 16689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosView(B, &Ba)); 166942550becSJunchao Zhang } 167042550becSJunchao Zhang 167108bb9926SJunchao Zhang PetscCall(PetscLogGpuTimeBegin()); 167242550becSJunchao Zhang /* Pack entries to be sent to remote */ 1673*92896123SJunchao Zhang Kokkos::parallel_for(Kokkos::RangePolicy<>(exec, 0, vsend.extent(0)), KOKKOS_LAMBDA(const PetscCount i) { vsend(i) = v1(Cperm1(i)); }); 167442550becSJunchao Zhang 167542550becSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 16762c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, vsend.data(), PETSC_MEMTYPE_KOKKOS, v2.data(), MPI_REPLACE)); 1677158ec288SJunchao Zhang /* Add local entries to A and B in one kernel */ 16789371c9d4SSatish Balay Kokkos::parallel_for( 1679*92896123SJunchao Zhang Kokkos::RangePolicy<>(exec, 0, Annz + Bnnz), KOKKOS_LAMBDA(PetscCount i) { 1680158ec288SJunchao Zhang PetscScalar sum = 0.0; 1681158ec288SJunchao Zhang if (i < Annz) { 1682158ec288SJunchao Zhang for (PetscCount k = Ajmap1(i); k < Ajmap1(i + 1); k++) sum += v1(Aperm1(k)); 1683ac38520cSJunchao Zhang Aa(i) = (imode == INSERT_VALUES ? 0.0 : Aa(i)) + sum; 1684158ec288SJunchao Zhang } else { 1685158ec288SJunchao Zhang i -= Annz; 1686158ec288SJunchao Zhang for (PetscCount k = Bjmap1(i); k < Bjmap1(i + 1); k++) sum += v1(Bperm1(k)); 1687ac38520cSJunchao Zhang Ba(i) = (imode == INSERT_VALUES ? 0.0 : Ba(i)) + sum; 1688158ec288SJunchao Zhang } 1689158ec288SJunchao Zhang }); 16902c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, vsend.data(), v2.data(), MPI_REPLACE)); 169142550becSJunchao Zhang 1692158ec288SJunchao Zhang /* Add received remote entries to A and B in one kernel */ 16939371c9d4SSatish Balay Kokkos::parallel_for( 1694*92896123SJunchao Zhang Kokkos::RangePolicy<>(exec, 0, Annz2 + Bnnz2), KOKKOS_LAMBDA(PetscCount i) { 1695158ec288SJunchao Zhang if (i < Annz2) { 1696158ec288SJunchao Zhang for (PetscCount k = Ajmap2(i); k < Ajmap2(i + 1); k++) Aa(Aimap2(i)) += v2(Aperm2(k)); 1697158ec288SJunchao Zhang } else { 1698158ec288SJunchao Zhang i -= Annz2; 1699158ec288SJunchao Zhang for (PetscCount k = Bjmap2(i); k < Bjmap2(i + 1); k++) Ba(Bimap2(i)) += v2(Bperm2(k)); 1700158ec288SJunchao Zhang } 1701158ec288SJunchao Zhang }); 170208bb9926SJunchao Zhang PetscCall(PetscLogGpuTimeEnd()); 170342550becSJunchao Zhang 1704394ed5ebSJunchao Zhang if (imode == INSERT_VALUES) { 17059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosViewWrite(A, &Aa)); /* Increase A & B's state etc. */ 17069566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosViewWrite(B, &Ba)); 1707394ed5ebSJunchao Zhang } else { 17089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosView(A, &Aa)); 17099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosView(B, &Ba)); 1710394ed5ebSJunchao Zhang } 17113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 171242550becSJunchao Zhang } 171342550becSJunchao Zhang 17142c4ab24aSJunchao Zhang static PetscErrorCode MatDestroy_MPIAIJKokkos(Mat A) 1715d71ae5a4SJacob Faibussowitsch { 1716076ba34aSJunchao Zhang PetscFunctionBegin; 17179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatMPIAIJSetPreallocation_C", NULL)); 17189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", NULL)); 17199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetPreallocationCOO_C", NULL)); 17209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetValuesCOO_C", NULL)); 17219566063dSJacob Faibussowitsch PetscCall(MatDestroy_MPIAIJ(A)); 17223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1723076ba34aSJunchao Zhang } 1724076ba34aSJunchao Zhang 1725f4747e26SJunchao Zhang static PetscErrorCode MatShift_MPIAIJKokkos(Mat A, PetscScalar a) 1726f4747e26SJunchao Zhang { 1727f4747e26SJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(A->data); 1728f4747e26SJunchao Zhang PetscBool congruent; 1729f4747e26SJunchao Zhang 1730f4747e26SJunchao Zhang PetscFunctionBegin; 1731f4747e26SJunchao Zhang PetscCall(MatHasCongruentLayouts(A, &congruent)); 1732f4747e26SJunchao Zhang if (congruent) { // square matrix and the diagonals are solely in the diag block 1733f4747e26SJunchao Zhang PetscCall(MatShift(mpiaij->A, a)); 1734f4747e26SJunchao Zhang } else { // too hard, use the general version 1735f4747e26SJunchao Zhang PetscCall(MatShift_Basic(A, a)); 1736f4747e26SJunchao Zhang } 1737f4747e26SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 1738f4747e26SJunchao Zhang } 1739f4747e26SJunchao Zhang 17402c4ab24aSJunchao Zhang static PetscErrorCode MatSetOps_MPIAIJKokkos(Mat B) 17412c4ab24aSJunchao Zhang { 17422c4ab24aSJunchao Zhang PetscFunctionBegin; 17432c4ab24aSJunchao Zhang B->ops->assemblyend = MatAssemblyEnd_MPIAIJKokkos; 17442c4ab24aSJunchao Zhang B->ops->mult = MatMult_MPIAIJKokkos; 17452c4ab24aSJunchao Zhang B->ops->multadd = MatMultAdd_MPIAIJKokkos; 17462c4ab24aSJunchao Zhang B->ops->multtranspose = MatMultTranspose_MPIAIJKokkos; 17472c4ab24aSJunchao Zhang B->ops->productsetfromoptions = MatProductSetFromOptions_MPIAIJKokkos; 17482c4ab24aSJunchao Zhang B->ops->destroy = MatDestroy_MPIAIJKokkos; 1749f4747e26SJunchao Zhang B->ops->shift = MatShift_MPIAIJKokkos; 17502c4ab24aSJunchao Zhang 17512c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJKokkos)); 17522c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJGetLocalMatMerge_C", MatMPIAIJGetLocalMatMerge_MPIAIJKokkos)); 17532c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJKokkos)); 17542c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJKokkos)); 17552c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 17562c4ab24aSJunchao Zhang } 17572c4ab24aSJunchao Zhang 1758d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat A, MatType mtype, MatReuse reuse, Mat *newmat) 1759d71ae5a4SJacob Faibussowitsch { 17608c3ff71bSJunchao Zhang Mat B; 1761076ba34aSJunchao Zhang Mat_MPIAIJ *a; 17628c3ff71bSJunchao Zhang 17638c3ff71bSJunchao Zhang PetscFunctionBegin; 17648c3ff71bSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 17659566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, newmat)); 17668c3ff71bSJunchao Zhang } else if (reuse == MAT_REUSE_MATRIX) { 17679566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *newmat, SAME_NONZERO_PATTERN)); 17688c3ff71bSJunchao Zhang } 17698c3ff71bSJunchao Zhang B = *newmat; 17708c3ff71bSJunchao Zhang 17716f3d89d0SStefano Zampini B->boundtocpu = PETSC_FALSE; 17729566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 17739566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECKOKKOS, &B->defaultvectype)); 17749566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJKOKKOS)); 17758c3ff71bSJunchao Zhang 1776076ba34aSJunchao Zhang a = static_cast<Mat_MPIAIJ *>(A->data); 17779566063dSJacob Faibussowitsch if (a->A) PetscCall(MatSetType(a->A, MATSEQAIJKOKKOS)); 17789566063dSJacob Faibussowitsch if (a->B) PetscCall(MatSetType(a->B, MATSEQAIJKOKKOS)); 17799566063dSJacob Faibussowitsch if (a->lvec) PetscCall(VecSetType(a->lvec, VECSEQKOKKOS)); 17802c4ab24aSJunchao Zhang PetscCall(MatSetOps_MPIAIJKokkos(B)); 17813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17828c3ff71bSJunchao Zhang } 17832c4ab24aSJunchao Zhang 17843f3ba80aSJunchao Zhang /*MC 178511a5261eSBarry Smith MATAIJKOKKOS - "mpiaijkokkos", a matrix type to be used for CSR sparse matrices with Kokkos 17868c3ff71bSJunchao Zhang 178715229ffcSPierre Jolivet A matrix type using Kokkos-Kernels CrsMatrix type for portability across different device types 17883f3ba80aSJunchao Zhang 17892ef1f0ffSBarry Smith Options Database Key: 17902ef1f0ffSBarry Smith . -mat_type aijkokkos - sets the matrix type to `MATAIJKOKKOS` 17913f3ba80aSJunchao Zhang 17923f3ba80aSJunchao Zhang Level: beginner 17933f3ba80aSJunchao Zhang 17941cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJKokkos()`, `MATSEQAIJKOKKOS`, `MATSEQAIJ`, `MATMPIAIJ` 17953f3ba80aSJunchao Zhang M*/ 1796d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJKokkos(Mat A) 1797d71ae5a4SJacob Faibussowitsch { 17988c3ff71bSJunchao Zhang PetscFunctionBegin; 17999566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 18009566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIAIJ(A)); 18019566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIAIJ_MPIAIJKokkos(A, MATMPIAIJKOKKOS, MAT_INPLACE_MATRIX, &A)); 18023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18038c3ff71bSJunchao Zhang } 18048c3ff71bSJunchao Zhang 18058c3ff71bSJunchao Zhang /*@C 180611a5261eSBarry Smith MatCreateAIJKokkos - Creates a sparse matrix in `MATAIJKOKOS` (compressed row) format 18078c3ff71bSJunchao Zhang (the default parallel PETSc format). This matrix will ultimately pushed down 180820f4b53cSBarry Smith to Kokkos for calculations. 18098c3ff71bSJunchao Zhang 18108c3ff71bSJunchao Zhang Collective 18118c3ff71bSJunchao Zhang 18128c3ff71bSJunchao Zhang Input Parameters: 181311a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF` 181420f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 181520f4b53cSBarry Smith This value should be the same as the local size used in creating the 181620f4b53cSBarry Smith y vector for the matrix-vector product y = Ax. 181720f4b53cSBarry Smith . n - This value should be the same as the local size used in creating the 181820f4b53cSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 181920f4b53cSBarry Smith calculated if N is given) For square matrices n is almost always `m`. 182020f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 182120f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 182220f4b53cSBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 182320f4b53cSBarry Smith (same value is used for all local rows) 182420f4b53cSBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 182520f4b53cSBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 182620f4b53cSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 182720f4b53cSBarry Smith The size of this array is equal to the number of local rows, i.e `m`. 182820f4b53cSBarry Smith For matrices you plan to factor you must leave room for the diagonal entry and 182920f4b53cSBarry Smith put in the entry even if it is zero. 183020f4b53cSBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 183120f4b53cSBarry Smith submatrix (same value is used for all local rows). 183220f4b53cSBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 183320f4b53cSBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 183420f4b53cSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 183520f4b53cSBarry Smith structure. The size of this array is equal to the number 183620f4b53cSBarry Smith of local rows, i.e `m`. 18378c3ff71bSJunchao Zhang 18388c3ff71bSJunchao Zhang Output Parameter: 18398c3ff71bSJunchao Zhang . A - the matrix 18408c3ff71bSJunchao Zhang 18412ef1f0ffSBarry Smith Level: intermediate 18422ef1f0ffSBarry Smith 18432ef1f0ffSBarry Smith Notes: 184411a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 18458c3ff71bSJunchao Zhang MatXXXXSetPreallocation() paradigm instead of this routine directly. 184611a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 18478c3ff71bSJunchao Zhang 1848667f096bSBarry Smith The AIJ format, also called compressed row storage), is fully compatible with standard Fortran 18498c3ff71bSJunchao Zhang storage. That is, the stored row and column indices can begin at 18502ef1f0ffSBarry Smith either one (as in Fortran) or zero. 18518c3ff71bSJunchao Zhang 18521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATAIJKOKOS`, `MATSEQAIJKOKOS`, `MATMPIAIJKOKOS`, `MatCreate()`, `MatCreateAIJ()`, `MatSetValues()`, 1853fe59aa6dSJacob Faibussowitsch `MatSeqAIJSetColumnIndices()`, `MatCreateSeqAIJWithArrays()`, `MATMPIAIJKOKKOS`, `MATAIJKOKKOS` 18548c3ff71bSJunchao Zhang @*/ 1855d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJKokkos(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 1856d71ae5a4SJacob Faibussowitsch { 18578c3ff71bSJunchao Zhang PetscMPIInt size; 18588c3ff71bSJunchao Zhang 18598c3ff71bSJunchao Zhang PetscFunctionBegin; 18609566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 18619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 18629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 18638c3ff71bSJunchao Zhang if (size > 1) { 18649566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJKOKKOS)); 18659566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 18668c3ff71bSJunchao Zhang } else { 18679566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJKOKKOS)); 18689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 18698c3ff71bSJunchao Zhang } 18703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18718c3ff71bSJunchao Zhang } 1872