111d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 2076ba34aSJunchao Zhang #include <petscsf.h> 342550becSJunchao Zhang #include <petsc/private/sfimpl.h> 48c3ff71bSJunchao Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 542550becSJunchao Zhang #include <../src/mat/impls/aij/seq/kokkos/aijkok.hpp> 642550becSJunchao Zhang #include <../src/mat/impls/aij/mpi/kokkos/mpiaijkok.hpp> 7076ba34aSJunchao Zhang #include <KokkosSparse_spadd.hpp> 811d22bbfSJunchao Zhang 98c3ff71bSJunchao Zhang PetscErrorCode MatAssemblyEnd_MPIAIJKokkos(Mat A,MatAssemblyType mode) 108c3ff71bSJunchao Zhang { 118c3ff71bSJunchao Zhang PetscErrorCode ierr; 128c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)A->data; 13a587d139SMark Mat_SeqAIJKokkos *aijkok = mpiaij->A->spptr ? static_cast<Mat_SeqAIJKokkos*>(mpiaij->A->spptr) : NULL; 148c3ff71bSJunchao Zhang 158c3ff71bSJunchao Zhang PetscFunctionBegin; 168c3ff71bSJunchao Zhang ierr = MatAssemblyEnd_MPIAIJ(A,mode);CHKERRQ(ierr); 17a587d139SMark if (aijkok && aijkok->device_mat_d.data()) { 18a587d139SMark A->offloadmask = PETSC_OFFLOAD_GPU; // in GPU mode, no going back. MatSetValues checks this 19a587d139SMark } 20a587d139SMark 218c3ff71bSJunchao Zhang PetscFunctionReturn(0); 228c3ff71bSJunchao Zhang } 238c3ff71bSJunchao Zhang 248c3ff71bSJunchao Zhang PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJKokkos(Mat mat,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 258c3ff71bSJunchao Zhang { 268c3ff71bSJunchao Zhang PetscErrorCode ierr; 278c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 288c3ff71bSJunchao Zhang 298c3ff71bSJunchao Zhang PetscFunctionBegin; 308c3ff71bSJunchao Zhang ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 318c3ff71bSJunchao Zhang ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 326a29ce69SStefano Zampini #if defined(PETSC_USE_DEBUG) 338c3ff71bSJunchao Zhang if (d_nnz) { 346a29ce69SStefano Zampini PetscInt i; 358c3ff71bSJunchao Zhang for (i=0; i<mat->rmap->n; i++) { 369ace16cdSJacob Faibussowitsch PetscAssertFalse(d_nnz[i] < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,d_nnz[i]); 378c3ff71bSJunchao Zhang } 388c3ff71bSJunchao Zhang } 398c3ff71bSJunchao Zhang if (o_nnz) { 406a29ce69SStefano Zampini PetscInt i; 418c3ff71bSJunchao Zhang for (i=0; i<mat->rmap->n; i++) { 429ace16cdSJacob Faibussowitsch PetscAssertFalse(o_nnz[i] < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,o_nnz[i]); 438c3ff71bSJunchao Zhang } 448c3ff71bSJunchao Zhang } 456a29ce69SStefano Zampini #endif 466a29ce69SStefano Zampini #if defined(PETSC_USE_CTABLE) 476a29ce69SStefano Zampini ierr = PetscTableDestroy(&mpiaij->colmap);CHKERRQ(ierr); 486a29ce69SStefano Zampini #else 496a29ce69SStefano Zampini ierr = PetscFree(mpiaij->colmap);CHKERRQ(ierr); 506a29ce69SStefano Zampini #endif 516a29ce69SStefano Zampini ierr = PetscFree(mpiaij->garray);CHKERRQ(ierr); 526a29ce69SStefano Zampini ierr = VecDestroy(&mpiaij->lvec);CHKERRQ(ierr); 536a29ce69SStefano Zampini ierr = VecScatterDestroy(&mpiaij->Mvctx);CHKERRQ(ierr); 546a29ce69SStefano Zampini /* Because the B will have been resized we simply destroy it and create a new one each time */ 556a29ce69SStefano Zampini ierr = MatDestroy(&mpiaij->B);CHKERRQ(ierr); 566a29ce69SStefano Zampini 576a29ce69SStefano Zampini if (!mpiaij->A) { 588c3ff71bSJunchao Zhang ierr = MatCreate(PETSC_COMM_SELF,&mpiaij->A);CHKERRQ(ierr); 598c3ff71bSJunchao Zhang ierr = MatSetSizes(mpiaij->A,mat->rmap->n,mat->cmap->n,mat->rmap->n,mat->cmap->n);CHKERRQ(ierr); 608c3ff71bSJunchao Zhang ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)mpiaij->A);CHKERRQ(ierr); 616a29ce69SStefano Zampini } 626a29ce69SStefano Zampini if (!mpiaij->B) { 636a29ce69SStefano Zampini PetscMPIInt size; 6455b25c41SPierre Jolivet ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRMPI(ierr); 658c3ff71bSJunchao Zhang ierr = MatCreate(PETSC_COMM_SELF,&mpiaij->B);CHKERRQ(ierr); 666a29ce69SStefano Zampini ierr = MatSetSizes(mpiaij->B,mat->rmap->n,size > 1 ? mat->cmap->N : 0,mat->rmap->n,size > 1 ? mat->cmap->N : 0);CHKERRQ(ierr); 678c3ff71bSJunchao Zhang ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)mpiaij->B);CHKERRQ(ierr); 688c3ff71bSJunchao Zhang } 696a29ce69SStefano Zampini ierr = MatSetType(mpiaij->A,MATSEQAIJKOKKOS);CHKERRQ(ierr); 706a29ce69SStefano Zampini ierr = MatSetType(mpiaij->B,MATSEQAIJKOKKOS);CHKERRQ(ierr); 718c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(mpiaij->A,d_nz,d_nnz);CHKERRQ(ierr); 728c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(mpiaij->B,o_nz,o_nnz);CHKERRQ(ierr); 738c3ff71bSJunchao Zhang mat->preallocated = PETSC_TRUE; 748c3ff71bSJunchao Zhang PetscFunctionReturn(0); 758c3ff71bSJunchao Zhang } 768c3ff71bSJunchao Zhang 778c3ff71bSJunchao Zhang PetscErrorCode MatMult_MPIAIJKokkos(Mat mat,Vec xx,Vec yy) 788c3ff71bSJunchao Zhang { 798c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 808c3ff71bSJunchao Zhang PetscErrorCode ierr; 818c3ff71bSJunchao Zhang PetscInt nt; 828c3ff71bSJunchao Zhang 838c3ff71bSJunchao Zhang PetscFunctionBegin; 848c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 859ace16cdSJacob Faibussowitsch PetscAssertFalse(nt != mat->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",mat->cmap->n,nt); 868c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 878c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->mult)(mpiaij->A,xx,yy);CHKERRQ(ierr); 888c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 898c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multadd)(mpiaij->B,mpiaij->lvec,yy,yy);CHKERRQ(ierr); 908c3ff71bSJunchao Zhang PetscFunctionReturn(0); 918c3ff71bSJunchao Zhang } 928c3ff71bSJunchao Zhang 938c3ff71bSJunchao Zhang PetscErrorCode MatMultAdd_MPIAIJKokkos(Mat mat,Vec xx,Vec yy,Vec zz) 948c3ff71bSJunchao Zhang { 958c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 968c3ff71bSJunchao Zhang PetscErrorCode ierr; 978c3ff71bSJunchao Zhang PetscInt nt; 988c3ff71bSJunchao Zhang 998c3ff71bSJunchao Zhang PetscFunctionBegin; 1008c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1019ace16cdSJacob Faibussowitsch PetscAssertFalse(nt != mat->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",mat->cmap->n,nt); 1028c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1038c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->multadd)(mpiaij->A,xx,yy,zz);CHKERRQ(ierr); 1048c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1058c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multadd)(mpiaij->B,mpiaij->lvec,zz,zz);CHKERRQ(ierr); 1068c3ff71bSJunchao Zhang PetscFunctionReturn(0); 1078c3ff71bSJunchao Zhang } 1088c3ff71bSJunchao Zhang 1098c3ff71bSJunchao Zhang PetscErrorCode MatMultTranspose_MPIAIJKokkos(Mat mat,Vec xx,Vec yy) 1108c3ff71bSJunchao Zhang { 1118c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 1128c3ff71bSJunchao Zhang PetscErrorCode ierr; 1138c3ff71bSJunchao Zhang PetscInt nt; 1148c3ff71bSJunchao Zhang 1158c3ff71bSJunchao Zhang PetscFunctionBegin; 1168c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1179ace16cdSJacob Faibussowitsch PetscAssertFalse(nt != mat->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",mat->rmap->n,nt); 1188c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multtranspose)(mpiaij->B,xx,mpiaij->lvec);CHKERRQ(ierr); 1198c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->multtranspose)(mpiaij->A,xx,yy);CHKERRQ(ierr); 1208c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,mpiaij->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1218c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,mpiaij->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1228c3ff71bSJunchao Zhang PetscFunctionReturn(0); 1238c3ff71bSJunchao Zhang } 1248c3ff71bSJunchao Zhang 125076ba34aSJunchao Zhang /* Merge the "A, B" matrices of mat into a matrix C. mat's type is MPIAIJKOKKOS. C's type is MATSEQAIJKOKKOS. 126076ba34aSJunchao Zhang A is put before B. C's size would be A->rmap->n by (A->cmap->n + B->cmap->n). 127076ba34aSJunchao Zhang C still uses local column ids. Their corresponding global column ids are returned in glob. 128076ba34aSJunchao Zhang */ 129076ba34aSJunchao Zhang PetscErrorCode MatMPIAIJGetLocalMatMerge_MPIAIJKokkos(Mat mat,MatReuse reuse,IS *glob,Mat *C) 130076ba34aSJunchao Zhang { 131076ba34aSJunchao Zhang Mat Ad,Ao; 132076ba34aSJunchao Zhang const PetscInt *cmap; 133076ba34aSJunchao Zhang PetscErrorCode ierr; 134076ba34aSJunchao Zhang 135076ba34aSJunchao Zhang PetscFunctionBegin; 136076ba34aSJunchao Zhang ierr = MatMPIAIJGetSeqAIJ(mat,&Ad,&Ao,&cmap);CHKERRQ(ierr); 137076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosMergeMats(Ad,Ao,reuse,C);CHKERRQ(ierr); 138076ba34aSJunchao Zhang if (glob) { 139076ba34aSJunchao Zhang PetscInt cst, i, dn, on, *gidx; 140076ba34aSJunchao Zhang ierr = MatGetLocalSize(Ad,NULL,&dn);CHKERRQ(ierr); 141076ba34aSJunchao Zhang ierr = MatGetLocalSize(Ao,NULL,&on);CHKERRQ(ierr); 142076ba34aSJunchao Zhang ierr = MatGetOwnershipRangeColumn(mat,&cst,NULL);CHKERRQ(ierr); 143076ba34aSJunchao Zhang ierr = PetscMalloc1(dn+on,&gidx);CHKERRQ(ierr); 144076ba34aSJunchao Zhang for (i=0; i<dn; i++) gidx[i] = cst + i; 145076ba34aSJunchao Zhang for (i=0; i<on; i++) gidx[i+dn] = cmap[i]; 146076ba34aSJunchao Zhang ierr = ISCreateGeneral(PetscObjectComm((PetscObject)Ad),dn+on,gidx,PETSC_OWN_POINTER,glob);CHKERRQ(ierr); 147076ba34aSJunchao Zhang } 148076ba34aSJunchao Zhang PetscFunctionReturn(0); 149076ba34aSJunchao Zhang } 150076ba34aSJunchao Zhang 151076ba34aSJunchao Zhang /* Structs used in matrix product C=AB, C=A^tB and C=B^tAB */ 152076ba34aSJunchao Zhang struct MatMatStruct { 153076ba34aSJunchao Zhang MatRowMapKokkosView Cdstart; /* Used to split sequential matrix into petsc's A, B format */ 154076ba34aSJunchao Zhang PetscSF sf; /* SF to send/recv matrix entries */ 155076ba34aSJunchao Zhang MatScalarKokkosView abuf; /* buf of mat values in send/recv */ 156076ba34aSJunchao Zhang Mat C1,C2,B_local; 157076ba34aSJunchao Zhang KokkosCsrMatrix C1_global,C2_global,C_global; 158076ba34aSJunchao Zhang KernelHandle kh; 159076ba34aSJunchao Zhang MatMatStruct() { 160076ba34aSJunchao Zhang C1 = C2 = B_local = NULL; 161076ba34aSJunchao Zhang sf = NULL; 162076ba34aSJunchao Zhang } 163076ba34aSJunchao Zhang 164076ba34aSJunchao Zhang ~MatMatStruct() { 165076ba34aSJunchao Zhang MatDestroy(&C1); 166076ba34aSJunchao Zhang MatDestroy(&C2); 167076ba34aSJunchao Zhang MatDestroy(&B_local); 168076ba34aSJunchao Zhang PetscSFDestroy(&sf); 169076ba34aSJunchao Zhang kh.destroy_spadd_handle(); 170076ba34aSJunchao Zhang } 171076ba34aSJunchao Zhang }; 172076ba34aSJunchao Zhang 173076ba34aSJunchao Zhang struct MatMatStruct_AB : public MatMatStruct { 174076ba34aSJunchao Zhang MatColIdxKokkosView rows; 175076ba34aSJunchao Zhang MatRowMapKokkosView rowoffset; 176076ba34aSJunchao Zhang Mat B_other,C_petsc; /* SEQAIJKOKKOS matrices. TODO: have a better var name than C_petsc */ 177076ba34aSJunchao Zhang 178076ba34aSJunchao Zhang MatMatStruct_AB() : B_other(NULL),C_petsc(NULL){} 179076ba34aSJunchao Zhang ~MatMatStruct_AB() { 180076ba34aSJunchao Zhang MatDestroy(&B_other); 181076ba34aSJunchao Zhang MatDestroy(&C_petsc); 182076ba34aSJunchao Zhang } 183076ba34aSJunchao Zhang }; 184076ba34aSJunchao Zhang 185076ba34aSJunchao Zhang struct MatMatStruct_AtB : public MatMatStruct { 186076ba34aSJunchao Zhang MatRowMapKokkosView srcrowoffset,dstrowoffset; 187076ba34aSJunchao Zhang }; 188076ba34aSJunchao Zhang 189076ba34aSJunchao Zhang struct MatProductData_MPIAIJKokkos 190076ba34aSJunchao Zhang { 191076ba34aSJunchao Zhang MatMatStruct_AB *mmAB; 192076ba34aSJunchao Zhang MatMatStruct_AtB *mmAtB; 193076ba34aSJunchao Zhang PetscBool reusesym; 194076ba34aSJunchao Zhang 195076ba34aSJunchao Zhang MatProductData_MPIAIJKokkos(): mmAB(NULL),mmAtB(NULL),reusesym(PETSC_FALSE){} 196076ba34aSJunchao Zhang ~MatProductData_MPIAIJKokkos() { 197076ba34aSJunchao Zhang delete mmAB; 198076ba34aSJunchao Zhang delete mmAtB; 199076ba34aSJunchao Zhang } 200076ba34aSJunchao Zhang }; 201076ba34aSJunchao Zhang 202076ba34aSJunchao Zhang static PetscErrorCode MatProductDataDestroy_MPIAIJKokkos(void *data) 203076ba34aSJunchao Zhang { 204076ba34aSJunchao Zhang PetscFunctionBegin; 205076ba34aSJunchao Zhang CHKERRCXX(delete static_cast<MatProductData_MPIAIJKokkos*>(data)); 206076ba34aSJunchao Zhang PetscFunctionReturn(0); 207076ba34aSJunchao Zhang } 208076ba34aSJunchao Zhang 209076ba34aSJunchao Zhang /* MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds - Get a KokkosCsrMatrix from a MATSEQAIJKOKKOS matrix 210076ba34aSJunchao Zhang 211076ba34aSJunchao Zhang Input Parameters: 212076ba34aSJunchao Zhang + A - the MATSEQAIJKOKKOS matrix 213076ba34aSJunchao Zhang . N - new column size for the returned Kokkos matrix 214076ba34aSJunchao Zhang - l2g - a map that maps old col ids to new col ids 215076ba34aSJunchao Zhang 216076ba34aSJunchao Zhang Output Parameters: 217076ba34aSJunchao Zhang . csrmat - the Kokkos matrix, which has the same row size as A, shares a, i but not j with A. 218076ba34aSJunchao Zhang */ 219076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(Mat A,PetscInt N,const ConstMatColIdxKokkosView& l2g,KokkosCsrMatrix& csrmat) 220076ba34aSJunchao Zhang { 221076ba34aSJunchao Zhang KokkosCsrMatrix& orig = static_cast<Mat_SeqAIJKokkos*>(A->spptr)->csrmat; 222076ba34aSJunchao Zhang MatColIdxKokkosView jg("jg",orig.nnz()); /* New j array for csrmat */ 223076ba34aSJunchao Zhang 224076ba34aSJunchao Zhang PetscFunctionBegin; 225076ba34aSJunchao Zhang CHKERRCXX(Kokkos::parallel_for(orig.nnz(), KOKKOS_LAMBDA(const PetscInt i) {jg(i) = l2g(orig.graph.entries(i));})); 226076ba34aSJunchao Zhang CHKERRCXX(csrmat = KokkosCsrMatrix("csrmat",orig.numRows(),N,orig.nnz(),orig.values,orig.graph.row_map,jg)); 227076ba34aSJunchao Zhang PetscFunctionReturn(0); 228076ba34aSJunchao Zhang } 229076ba34aSJunchao Zhang 230076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices - Set the diag and offdiag matrices of a MATMPIAIJKOKKOS matrix. 231076ba34aSJunchao Zhang It is similar to MatCreateMPIAIJWithSplitArrays. 232076ba34aSJunchao Zhang 233076ba34aSJunchao Zhang Input Parameters: 234076ba34aSJunchao Zhang + mat - the MATMPIAIJKOKKOS matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set 235076ba34aSJunchao Zhang . A - the diag matrix using local col ids 236076ba34aSJunchao Zhang - B - the offdiag matrix using global col ids 237076ba34aSJunchao Zhang 238076ba34aSJunchao Zhang Output Parameters: 239076ba34aSJunchao Zhang . mat - the updated MATMPIAIJKOKKOS matrix 240076ba34aSJunchao Zhang */ 241076ba34aSJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Mat mat,Mat A,Mat B) 242076ba34aSJunchao Zhang { 243076ba34aSJunchao Zhang PetscErrorCode ierr; 244076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ*>(mat->data); 245076ba34aSJunchao Zhang PetscInt m,n,M,N,Am,An,Bm,Bn; 246076ba34aSJunchao Zhang Mat_SeqAIJKokkos *bkok = static_cast<Mat_SeqAIJKokkos*>(B->spptr); 247076ba34aSJunchao Zhang 248076ba34aSJunchao Zhang PetscFunctionBegin; 249076ba34aSJunchao Zhang ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr); 250076ba34aSJunchao Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 251076ba34aSJunchao Zhang ierr = MatGetLocalSize(A,&Am,&An);CHKERRQ(ierr); 252076ba34aSJunchao Zhang ierr = MatGetLocalSize(B,&Bm,&Bn);CHKERRQ(ierr); 253076ba34aSJunchao Zhang 2549ace16cdSJacob Faibussowitsch PetscAssertFalse(m != Am || m != Bm,PETSC_COMM_SELF,PETSC_ERR_PLIB,"local number of rows do not match"); 2559ace16cdSJacob Faibussowitsch PetscAssertFalse(n != An,PETSC_COMM_SELF,PETSC_ERR_PLIB,"local number of columns do not match"); 2569ace16cdSJacob Faibussowitsch PetscAssertFalse(N != Bn,PETSC_COMM_SELF,PETSC_ERR_PLIB,"global number of columns do not match"); 2579ace16cdSJacob Faibussowitsch PetscAssertFalse(mpiaij->A || mpiaij->B,PETSC_COMM_SELF,PETSC_ERR_PLIB,"A, B of the MPIAIJ matrix are not empty"); 258076ba34aSJunchao Zhang mpiaij->A = A; 259076ba34aSJunchao Zhang mpiaij->B = B; 260076ba34aSJunchao Zhang 261076ba34aSJunchao Zhang mat->preallocated = PETSC_TRUE; 262076ba34aSJunchao Zhang mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 263076ba34aSJunchao Zhang 264076ba34aSJunchao Zhang ierr = MatSetOption(mat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE);CHKERRQ(ierr); 265076ba34aSJunchao Zhang ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 266076ba34aSJunchao Zhang /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 267076ba34aSJunchao Zhang also gets mpiaij->B compacted, with its col ids and size reduced 268076ba34aSJunchao Zhang */ 269076ba34aSJunchao Zhang ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 270076ba34aSJunchao Zhang ierr = MatSetOption(mat,MAT_NO_OFF_PROC_ENTRIES,PETSC_FALSE);CHKERRQ(ierr); 271076ba34aSJunchao Zhang ierr = MatSetOption(mat,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 272076ba34aSJunchao Zhang 273076ba34aSJunchao Zhang /* Update bkok with new local col ids (stored on host) and size */ 274076ba34aSJunchao Zhang bkok->j_dual.modify_host(); 275076ba34aSJunchao Zhang bkok->j_dual.sync_device(); 276076ba34aSJunchao Zhang bkok->SetColSize(mpiaij->B->cmap->n); 277076ba34aSJunchao Zhang PetscFunctionReturn(0); 278076ba34aSJunchao Zhang } 279076ba34aSJunchao Zhang 280076ba34aSJunchao Zhang /* MatSeqAIJKokkosBcast - Bcast rows of a SEQAIJKOKKOS matrice (B) to form a SEQAIJKOKKOS matrix (C). 281076ba34aSJunchao Zhang 282076ba34aSJunchao Zhang It is essentially the MPIAIJKOKKOS counterpart of MatGetBrowsOfAoCols_MPIAIJ, but supports device and uses PetscSF. 283076ba34aSJunchao Zhang In the given ownerSF, leaves correspond to rows in C, and roots correspond to rows in B. Roots may connect to multiple leaves. 284076ba34aSJunchao Zhang Suppose C's j-th row is connected to a root identified by PetscSFNode (k,i), it means we will bcast the i-th row of B on rank k 285076ba34aSJunchao Zhang to j-th row of C. ownerSF's leaves must be contiguous (in other words, as if ilocal=NULL was used to set its graph). 286076ba34aSJunchao Zhang 287076ba34aSJunchao Zhang Collective on comm of ownerSF 288076ba34aSJunchao Zhang 289076ba34aSJunchao Zhang Input Parameters: 290076ba34aSJunchao Zhang + B - the SEQAIJKOKKOS matrix, using local col ids 291076ba34aSJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 292076ba34aSJunchao Zhang . N - global col ids are in range of [0,N). N Must be the same across ranks (nonsignificant in MAT_REUSE_MATRIX) 293076ba34aSJunchao Zhang . l2g - a map mapping B's local col ids to global ones (nonsignificant in MAT_REUSE_MATRIX) 294076ba34aSJunchao Zhang . ownerSF - the ownership SF (nonsignificant in MAT_REUSE_MATRIX) 295076ba34aSJunchao Zhang 296076ba34aSJunchao Zhang Input/Output Parameters (out when resue = MAT_INITIAL_MATRIX, inout when reuse = MAT_REUSE_MATRIX) 297076ba34aSJunchao Zhang + bcastSF - the SF used to bcast rows of B. This plain SF does buffer (abuf) to buffer (Ca) send/recv. In this SF, vertices are nonzeros. 298076ba34aSJunchao Zhang . abuf - buffer for sending matrix values 299076ba34aSJunchao Zhang . rows - array containing indices of (local) rows that this rank needs to bcast to others. Each receiver rank has a chunk in rows[]. 300076ba34aSJunchao Zhang Values in rows[] might have repeats, which simply indicates a row will be bcast'ed to multiple neighbors. 301076ba34aSJunchao Zhang . rowoffset - For each row in rows[], it will be copied to rowoffset[] at abuf[] 302076ba34aSJunchao Zhang - C - the SEQAIJKOKKOS matrix made of the bcast'ed rows, using local col ids. 303076ba34aSJunchao Zhang */ 304076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJKokkosBcast(Mat B,MatReuse reuse,PetscInt N,const ConstMatColIdxKokkosView& l2g,PetscSF ownerSF, 305076ba34aSJunchao Zhang PetscSF& bcastSF,MatScalarKokkosView& abuf,MatColIdxKokkosView& rows, 306076ba34aSJunchao Zhang MatRowMapKokkosView& rowoffset,Mat& C) 307076ba34aSJunchao Zhang { 308076ba34aSJunchao Zhang PetscErrorCode ierr; 309076ba34aSJunchao Zhang Mat_SeqAIJKokkos *bkok,*ckok; 310076ba34aSJunchao Zhang 311076ba34aSJunchao Zhang PetscFunctionBegin; 312076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosSyncDevice(B);CHKERRQ(ierr); /* Make sure B->spptr is accessible */ 313076ba34aSJunchao Zhang bkok = static_cast<Mat_SeqAIJKokkos*>(B->spptr); 314076ba34aSJunchao Zhang 315076ba34aSJunchao Zhang if (reuse == MAT_REUSE_MATRIX) { 316076ba34aSJunchao Zhang ckok = static_cast<Mat_SeqAIJKokkos*>(C->spptr); 317076ba34aSJunchao Zhang 318076ba34aSJunchao Zhang const auto& Ba = bkok->a_dual.view_device(); 319076ba34aSJunchao Zhang const auto& Bi = bkok->i_dual.view_device(); 320076ba34aSJunchao Zhang const auto& Ca = ckok->a_dual.view_device(); 321076ba34aSJunchao Zhang 322076ba34aSJunchao Zhang /* Copy Ba to abuf */ 323076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(rows.extent(0), Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 324076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* rows[i] is r-th row of B */ 325076ba34aSJunchao Zhang PetscInt r = rows(i); 326076ba34aSJunchao Zhang PetscInt base = rowoffset(i); /* Copy r-th row of B to this offset in abuf[] */ 327076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,Bi(r+1)-Bi(r)),[&](PetscInt k) { 328076ba34aSJunchao Zhang abuf(base+k) = Ba(Bi(r)+k); 329076ba34aSJunchao Zhang }); 330076ba34aSJunchao Zhang }); 331076ba34aSJunchao Zhang 332076ba34aSJunchao Zhang /* Send abuf to Ca through bcastSF and then mark C is updated on device */ 333076ba34aSJunchao Zhang ierr = PetscSFBcastBegin(bcastSF,MPIU_SCALAR,abuf.data(),Ca.data(),MPI_REPLACE);CHKERRQ(ierr); /* TODO: get memtype for abuf */ 334076ba34aSJunchao Zhang ierr = PetscSFBcastEnd (bcastSF,MPIU_SCALAR,abuf.data(),Ca.data(),MPI_REPLACE);CHKERRQ(ierr); 335076ba34aSJunchao Zhang ckok->a_dual.modify_device(); 336076ba34aSJunchao Zhang } else if (reuse == MAT_INITIAL_MATRIX) { 337076ba34aSJunchao Zhang MPI_Comm comm; 338076ba34aSJunchao Zhang PetscMPIInt tag; 339076ba34aSJunchao Zhang PetscInt k,Cm,Cn,Cnnz,*Ci_h,nroots,nleaves; 340076ba34aSJunchao Zhang 341076ba34aSJunchao Zhang ierr = PetscObjectGetComm((PetscObject)ownerSF,&comm);CHKERRMPI(ierr); 342076ba34aSJunchao Zhang ierr = PetscSFGetGraph(ownerSF,&nroots,&nleaves,NULL,NULL);CHKERRQ(ierr); 343076ba34aSJunchao Zhang Cm = nleaves; /* row size of C */ 344076ba34aSJunchao Zhang Cn = N; /* col size of C, which initially uses global ids, so we can safely set its col size as N */ 345076ba34aSJunchao Zhang 346076ba34aSJunchao Zhang /* Get row lens (nz) of B's rows for later fast query */ 347076ba34aSJunchao Zhang PetscInt *Browlens; 348076ba34aSJunchao Zhang const PetscInt *tmp = bkok->i_host_data(); 349076ba34aSJunchao Zhang ierr = PetscMalloc1(nroots,&Browlens);CHKERRQ(ierr); 350076ba34aSJunchao Zhang for (k=0; k<nroots; k++) Browlens[k] = tmp[k+1]-tmp[k]; 351076ba34aSJunchao Zhang 352076ba34aSJunchao Zhang /* By ownerSF, each proc gets lens of rows of C */ 353076ba34aSJunchao Zhang MatRowMapKokkosDualView Ci("i",Cm+1); /* C's rowmap */ 354076ba34aSJunchao Zhang Ci_h = Ci.view_host().data(); 355076ba34aSJunchao Zhang Ci_h[0] = 0; 356076ba34aSJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(ownerSF,MPIU_INT,PETSC_MEMTYPE_HOST,Browlens,PETSC_MEMTYPE_HOST,&Ci_h[1],MPI_REPLACE);CHKERRQ(ierr); 357076ba34aSJunchao Zhang ierr = PetscSFBcastEnd(ownerSF,MPIU_INT,Browlens,&Ci_h[1],MPI_REPLACE);CHKERRQ(ierr); 358076ba34aSJunchao Zhang for (k=1; k<Cm+1; k++) Ci_h[k] += Ci_h[k-1]; /* Convert lens to CSR */ 359076ba34aSJunchao Zhang Cnnz = Ci_h[Cm]; 360076ba34aSJunchao Zhang Ci.modify_host(); 361076ba34aSJunchao Zhang Ci.sync_device(); 362076ba34aSJunchao Zhang 363076ba34aSJunchao Zhang /* With the newly known Cnnz, we are able to allocate (j, a) for C on host & device */ 364076ba34aSJunchao Zhang MatColIdxKokkosDualView Cj("j",Cnnz); 365076ba34aSJunchao Zhang MatScalarKokkosDualView Ca("a",Cnnz); 366076ba34aSJunchao Zhang 367076ba34aSJunchao Zhang /* Now build the bcastSF to fill Ca, Cj. This plain SF only does (contiguous) buffer to buffer send/recv */ 368076ba34aSJunchao Zhang const PetscMPIInt *iranks,*ranks; 369076ba34aSJunchao Zhang const PetscInt *ioffset,*irootloc,*roffset; 370076ba34aSJunchao Zhang PetscInt i,j,niranks,nranks,*sdisp,*rdisp,*rowptr; 371076ba34aSJunchao Zhang MPI_Request *reqs; 372076ba34aSJunchao Zhang 373076ba34aSJunchao Zhang ierr = PetscSFGetLeafRanks(ownerSF,&niranks,&iranks,&ioffset,&irootloc);CHKERRQ(ierr); /* irootloc[] contains indices of rows I need to send to each receiver */ 374076ba34aSJunchao Zhang ierr = PetscSFGetRootRanks(ownerSF,&nranks,&ranks,&roffset,NULL/*rmine*/,NULL/*rremote*/);CHKERRQ(ierr); /* recv info */ 375076ba34aSJunchao Zhang 376076ba34aSJunchao Zhang /* figure out offsets at the send buffer, to build the SF 377076ba34aSJunchao Zhang sdisp[] - stores offsets of nonzeros (in abuf or jbuf, see later) I need to send, per receiver. 378076ba34aSJunchao Zhang rowptr[] - stores offsets for data of each row in abuf 379076ba34aSJunchao Zhang 380076ba34aSJunchao Zhang rdisp[] - to receive sdisp[] 381076ba34aSJunchao Zhang */ 382076ba34aSJunchao Zhang ierr = PetscMalloc3(niranks+1,&sdisp,nranks,&rdisp,niranks+nranks,&reqs);CHKERRQ(ierr); 383076ba34aSJunchao Zhang MatRowMapKokkosViewHost rowptr_h("rowptr_h",ioffset[niranks]+1); /* Let Kokkos do the allocation, so that we can do an easy mirror later */ 384076ba34aSJunchao Zhang rowptr = rowptr_h.data(); 385076ba34aSJunchao Zhang 386076ba34aSJunchao Zhang sdisp[0] = 0; 387076ba34aSJunchao Zhang rowptr[0] = 0; 388076ba34aSJunchao Zhang for (i=0; i<niranks; i++) { /* for each receiver */ 389076ba34aSJunchao Zhang PetscInt len, nz = 0; 390076ba34aSJunchao Zhang for (j=ioffset[i]; j<ioffset[i+1]; j++) { /* for each row to this receiver */ 391076ba34aSJunchao Zhang len = Browlens[irootloc[j]]; 392076ba34aSJunchao Zhang rowptr[j+1] = rowptr[j] + len; 393076ba34aSJunchao Zhang nz += len; 394076ba34aSJunchao Zhang } 395076ba34aSJunchao Zhang sdisp[i+1] = sdisp[i] + nz; 396076ba34aSJunchao Zhang } 397076ba34aSJunchao Zhang ierr = PetscCommGetNewTag(comm,&tag);CHKERRMPI(ierr); 398076ba34aSJunchao Zhang for (i=0; i<nranks; i++) {ierr = MPI_Irecv(&rdisp[i],1,MPIU_INT,ranks[i],tag,comm,&reqs[i]);CHKERRMPI(ierr);} 399076ba34aSJunchao Zhang for (i=0; i<niranks; i++) {ierr = MPI_Isend(&sdisp[i],1,MPIU_INT,iranks[i],tag,comm,&reqs[nranks+i]);CHKERRMPI(ierr);} 400076ba34aSJunchao Zhang ierr = MPI_Waitall(niranks+nranks,reqs,MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 401076ba34aSJunchao Zhang 402076ba34aSJunchao Zhang PetscInt nleaves2 = Cnnz; /* leaves are the nonzeros I will receive */ 403076ba34aSJunchao Zhang PetscInt nroots2 = sdisp[niranks]; /* roots are the nonzeros (in abuf) I will send */ 404076ba34aSJunchao Zhang PetscSFNode *iremote; 405076ba34aSJunchao Zhang ierr = PetscMalloc1(nleaves2,&iremote);CHKERRQ(ierr); 406076ba34aSJunchao Zhang for (i=0; i<nranks; i++) { /* for each sender */ 407076ba34aSJunchao Zhang k = 0; 408076ba34aSJunchao Zhang for (j=Ci_h[roffset[i]]; j<Ci_h[roffset[i+1]]; j++) { 409076ba34aSJunchao Zhang iremote[j].rank = ranks[i]; 410076ba34aSJunchao Zhang iremote[j].index = rdisp[i] + k; 411076ba34aSJunchao Zhang k++; 412076ba34aSJunchao Zhang } 413076ba34aSJunchao Zhang } 414076ba34aSJunchao Zhang /* TODO: we should extend PetscSF APIs for this buffer-to-buffer send/recv */ 415076ba34aSJunchao Zhang ierr = PetscSFCreate(comm,&bcastSF);CHKERRQ(ierr); 416076ba34aSJunchao Zhang ierr = PetscSFSetGraph(bcastSF,nroots2,nleaves2,NULL/*ilocal*/,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 417076ba34aSJunchao Zhang 418076ba34aSJunchao Zhang /* Extract selected rows of B, and copy their (a, j) into abuf[] and jbuf[], with j converted 419076ba34aSJunchao Zhang from local to global. Then use bcastSF to fill Ca, Cj. 420076ba34aSJunchao Zhang */ 421076ba34aSJunchao Zhang ConstMatColIdxKokkosViewHost rows_h(irootloc,ioffset[niranks]); /* irootloc[] stores indices of rows I need to send */ 422076ba34aSJunchao Zhang MatColIdxKokkosView rows("rows",ioffset[niranks]); 423076ba34aSJunchao Zhang Kokkos::deep_copy(rows,rows_h); /* Use deep copy since irootoc is managed by PetscSF and we want 'rows' to be standalone */ 424076ba34aSJunchao Zhang 425076ba34aSJunchao Zhang rowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),rowptr_h); /* If no device, rowoffset will be an alias to rowptr_h */ 426076ba34aSJunchao Zhang 427076ba34aSJunchao Zhang MatColIdxKokkosView jbuf("jbuf",sdisp[niranks]); /* send buf for (global) col ids */ 428076ba34aSJunchao Zhang abuf = MatScalarKokkosView("abuf",sdisp[niranks]); /* send buf for mat values */ 429076ba34aSJunchao Zhang 430076ba34aSJunchao Zhang const auto& Ba = bkok->a_dual.view_device(); 431076ba34aSJunchao Zhang const auto& Bi = bkok->i_dual.view_device(); 432076ba34aSJunchao Zhang const auto& Bj = bkok->j_dual.view_device(); 433076ba34aSJunchao Zhang 434076ba34aSJunchao Zhang /* Copy Ba, Bj to abuf, jbuf with change col ids from local to global */ 435076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(rows.extent(0), Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 436076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* rows[i] is r-th row of B */ 437076ba34aSJunchao Zhang PetscInt r = rows(i); 438076ba34aSJunchao Zhang PetscInt base = rowoffset(i); /* Copy r-th row of B to this offset in abuf[] */ 439076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,Bi(r+1)-Bi(r)),[&](PetscInt k) { 440076ba34aSJunchao Zhang abuf(base+k) = Ba(Bi(r)+k); 441076ba34aSJunchao Zhang jbuf(base+k) = l2g(Bj(Bi(r)+k)); 442076ba34aSJunchao Zhang }); 443076ba34aSJunchao Zhang }); 444076ba34aSJunchao Zhang 445076ba34aSJunchao Zhang /* Send abuf & jbuf to fill Ca, Cj */ 446076ba34aSJunchao Zhang ierr = PetscSFBcastBegin(bcastSF,MPIU_INT, jbuf.data(),Cj.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 447076ba34aSJunchao Zhang ierr = PetscSFBcastBegin(bcastSF,MPIU_SCALAR,abuf.data(),Ca.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 448076ba34aSJunchao Zhang ierr = PetscSFBcastEnd (bcastSF,MPIU_INT, jbuf.data(),Cj.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 449076ba34aSJunchao Zhang ierr = PetscSFBcastEnd (bcastSF,MPIU_SCALAR,abuf.data(),Ca.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 450076ba34aSJunchao Zhang Cj.modify_device(); /* Mark Cj, Ca modified on device, but only sync Cj since we might not need Ca on host at all */ 451076ba34aSJunchao Zhang Cj.sync_host(); 452076ba34aSJunchao Zhang Ca.modify_device(); 453076ba34aSJunchao Zhang 454076ba34aSJunchao Zhang /* Construct C with Ca, Ci, Cj */ 455076ba34aSJunchao Zhang auto ckok = new Mat_SeqAIJKokkos(Cm,Cn,Cnnz,Ci,Cj,Ca); 456076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,ckok,&C);CHKERRQ(ierr); 457076ba34aSJunchao Zhang ierr = PetscFree3(sdisp,rdisp,reqs);CHKERRQ(ierr); 458076ba34aSJunchao Zhang ierr = PetscFree(Browlens);CHKERRQ(ierr); 45998921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unsupported MatReuse enum %d",reuse); 460076ba34aSJunchao Zhang PetscFunctionReturn(0); 461076ba34aSJunchao Zhang } 462076ba34aSJunchao Zhang 463076ba34aSJunchao Zhang /* MatSeqAIJKokkosReduce - Reduce rows of a SEQAIJKOKKOS matrix (A) to form a Kokkos Csr matrix (C) 464076ba34aSJunchao Zhang 465076ba34aSJunchao Zhang It is the reverse of MatSeqAIJKokkosBcast in some sense. 466076ba34aSJunchao Zhang 467076ba34aSJunchao Zhang Think each row of A as a leaf, then the given ownerSF specifies roots of the leaves. Roots may connect to multiple leaves. 468076ba34aSJunchao Zhang In this routine, we reduce (i.e., concatenate) leaves (rows) at their roots to form potentially longer rows in C. Such rows might 469076ba34aSJunchao Zhang contain repeats, which does not matter since they will be summed up by other routines. C's row size will be nroots of ownerSF. 470076ba34aSJunchao Zhang 471076ba34aSJunchao Zhang Input Parameters: 472076ba34aSJunchao Zhang + A - the SEQAIJKOKKOS matrix to be reduced 473076ba34aSJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 474076ba34aSJunchao Zhang . local - true if A uses local col ids; false if A is already in global col ids. 475076ba34aSJunchao Zhang . N - if local, N is A's global col size 476076ba34aSJunchao Zhang . l2g - if local, a map mapping A's local col ids to global ones, which are in range of [0,N). 477076ba34aSJunchao Zhang - ownerSF - the SF specifies ownership (root) of rows in A 478076ba34aSJunchao Zhang 479076ba34aSJunchao Zhang Output Parameters: 480076ba34aSJunchao Zhang + reduceSF - the SF to reduce A's rows to contiguous buffers at the receiver side 481076ba34aSJunchao Zhang . abuf - a contiguous buffer to receive A's rows sent to this proc. Suppose there are 'nrows' such rows. 482076ba34aSJunchao Zhang . srcrowoffset - offset array of size nrows+1. Each entry is the corresponding row's offset in abuf[]. srcrowoffset[i+1]-srcrowoffset[i] is row i's len. 483076ba34aSJunchao Zhang . dstrowoffset - offset array of size nrows. Each entry is the corresponding row's offset in Ca[], i.e., C's 'a' array. Row i, i+1 in abuf[] may go to 484076ba34aSJunchao Zhang unrelated places in Ca, so dstrowoffset is not in CSR-like format as srcrowoffset. 485076ba34aSJunchao Zhang - C - the matrix made up by rows sent to me from other ranks, using global col ids 486076ba34aSJunchao Zhang 487076ba34aSJunchao Zhang TODO: we can even have MatSeqAIJKokkosReduceBegin/End to provide oppertunity for callers to overlap comp./comm. when reuse = MAT_REUSE_MATRIX. 488076ba34aSJunchao Zhang */ 489076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJKokkosReduce(Mat A,MatReuse reuse,PetscBool local,PetscInt N,const ConstMatColIdxKokkosView& l2g,PetscSF ownerSF, 490076ba34aSJunchao Zhang PetscSF& reduceSF,MatScalarKokkosView& abuf, 491076ba34aSJunchao Zhang MatRowMapKokkosView& srcrowoffset,MatRowMapKokkosView& dstrowoffset, 492076ba34aSJunchao Zhang KokkosCsrMatrix& C) 493076ba34aSJunchao Zhang { 494076ba34aSJunchao Zhang PetscErrorCode ierr; 495076ba34aSJunchao Zhang PetscInt i,r,Am,An,Annz,Cnnz,nrows; 496076ba34aSJunchao Zhang const PetscInt *Ai; 497076ba34aSJunchao Zhang Mat_SeqAIJKokkos *akok; 498076ba34aSJunchao Zhang 499076ba34aSJunchao Zhang PetscFunctionBegin; 500076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosSyncDevice(A);CHKERRQ(ierr); /* So that A's latest data is on device */ 501076ba34aSJunchao Zhang ierr = MatGetSize(A,&Am,&An); 502076ba34aSJunchao Zhang Ai = static_cast<Mat_SeqAIJ*>(A->data)->i; 503076ba34aSJunchao Zhang akok = static_cast<Mat_SeqAIJKokkos*>(A->spptr); 504076ba34aSJunchao Zhang Annz = Ai[Am]; 505076ba34aSJunchao Zhang 506076ba34aSJunchao Zhang if (reuse == MAT_REUSE_MATRIX) { 507076ba34aSJunchao Zhang /* Send Aa to abuf */ 508076ba34aSJunchao Zhang ierr = PetscSFReduceBegin(reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 509076ba34aSJunchao Zhang ierr = PetscSFReduceEnd (reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 510076ba34aSJunchao Zhang 511076ba34aSJunchao Zhang /* Copy abuf to Ca */ 512076ba34aSJunchao Zhang const MatScalarKokkosView& Ca = C.values; 513076ba34aSJunchao Zhang nrows = dstrowoffset.extent(0); /* Not srcrowoffset[] since it has an extra entry for CSR */ 514076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(nrows, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 515076ba34aSJunchao Zhang PetscInt i = t.league_rank(); 516076ba34aSJunchao Zhang PetscInt src = srcrowoffset(i), dst = dstrowoffset(i); 517076ba34aSJunchao Zhang PetscInt len = srcrowoffset(i+1) - srcrowoffset(i); 518076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,len), [&](PetscInt k) {Ca(dst+k) = abuf(src+k);}); 519076ba34aSJunchao Zhang }); 520076ba34aSJunchao Zhang } else if (reuse == MAT_INITIAL_MATRIX) { 521076ba34aSJunchao Zhang MPI_Comm comm; 522076ba34aSJunchao Zhang MPI_Request *reqs; 523076ba34aSJunchao Zhang PetscMPIInt tag; 524076ba34aSJunchao Zhang PetscInt Cm; 525076ba34aSJunchao Zhang 526076ba34aSJunchao Zhang ierr = PetscObjectGetComm((PetscObject)ownerSF,&comm);CHKERRQ(ierr); 527076ba34aSJunchao Zhang ierr = PetscCommGetNewTag(comm,&tag);CHKERRQ(ierr); 528076ba34aSJunchao Zhang 529076ba34aSJunchao Zhang PetscInt niranks,nranks,nroots,nleaves; 530076ba34aSJunchao Zhang const PetscMPIInt *iranks,*ranks; 531076ba34aSJunchao Zhang const PetscInt *ioffset,*rows,*roffset; /* rows[] contains local indices of rows scattered to me from others. ioffset[] is a CSR on rows[] */ 532076ba34aSJunchao Zhang ierr = PetscSFSetUp(ownerSF);CHKERRQ(ierr); 533076ba34aSJunchao Zhang ierr = PetscSFGetLeafRanks(ownerSF,&niranks,&iranks,&ioffset,&rows);CHKERRQ(ierr); /* recv info: iranks[] will send rows to me */ 534076ba34aSJunchao Zhang ierr = PetscSFGetRootRanks(ownerSF,&nranks,&ranks,&roffset,NULL/*rmine*/,NULL/*rremote*/);CHKERRQ(ierr); /* send info */ 535076ba34aSJunchao Zhang ierr = PetscSFGetGraph(ownerSF,&nroots,&nleaves,NULL,NULL);CHKERRQ(ierr); 5369ace16cdSJacob Faibussowitsch PetscAssertFalse(nleaves != Am,PETSC_COMM_SELF,PETSC_ERR_PLIB,"ownerSF's nleaves(%" PetscInt_FMT ") != row size of A(%" PetscInt_FMT ")",nleaves,Am); 537076ba34aSJunchao Zhang Cm = nroots; 538076ba34aSJunchao Zhang nrows = ioffset[niranks]; /* # of rows to be received. Might receive same row (each is partial) from different senders */ 539076ba34aSJunchao Zhang 540076ba34aSJunchao Zhang /* Tell owners how long each row I will send */ 541076ba34aSJunchao Zhang PetscInt *srowlens; /* send buf of row lens */ 542076ba34aSJunchao Zhang MatRowMapKokkosViewHost rrowlens_h("rrowoffset_h",nrows+1); /* recv buf of row lens. +1 to make CSR later. Memory might be passed to other views */ 543076ba34aSJunchao Zhang PetscInt *rrowlens = rrowlens_h.data(); 544076ba34aSJunchao Zhang 545076ba34aSJunchao Zhang ierr = PetscMalloc2(Am,&srowlens,niranks+nranks,&reqs);CHKERRQ(ierr); 546076ba34aSJunchao Zhang for (i=0; i<Am; i++) srowlens[i] = Ai[i+1] - Ai[i]; 547076ba34aSJunchao Zhang rrowlens[0] = 0; 548076ba34aSJunchao Zhang rrowlens++; /* shift the pointer to make the following expression more readable */ 549076ba34aSJunchao Zhang for (i=0; i<niranks; i++){ierr = MPI_Irecv(&rrowlens[ioffset[i]],ioffset[i+1]-ioffset[i],MPIU_INT,iranks[i],tag,comm,&reqs[i]);CHKERRMPI(ierr);} 550076ba34aSJunchao Zhang for (i=0; i<nranks; i++) {ierr = MPI_Isend(&srowlens[roffset[i]],roffset[i+1]-roffset[i],MPIU_INT,ranks[i],tag,comm,&reqs[niranks+i]);CHKERRMPI(ierr);} 551076ba34aSJunchao Zhang ierr = MPI_Waitall(niranks+nranks,reqs,MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 552076ba34aSJunchao Zhang 553076ba34aSJunchao Zhang /* Owner builds Ci on host by histogramming rrowlens[] */ 554076ba34aSJunchao Zhang MatRowMapKokkosViewHost Ci_h("i",Cm+1); 555076ba34aSJunchao Zhang Kokkos::deep_copy(Ci_h,0); /* Zero Ci */ 556076ba34aSJunchao Zhang MatRowMapType *Ci_ptr = Ci_h.data(); 557076ba34aSJunchao Zhang 558076ba34aSJunchao Zhang for (i=0; i<nrows; i++) { 559076ba34aSJunchao Zhang r = rows[i]; /* local row id of i-th received row */ 560076ba34aSJunchao Zhang #if defined(PETSC_USE_DEBUG) 5619ace16cdSJacob Faibussowitsch PetscAssertFalse(r<0 || r>=Cm,PETSC_COMM_SELF,PETSC_ERR_PLIB,"local row id (%" PetscInt_FMT ") is out of range [0,%" PetscInt_FMT ")",r,Cm); 562076ba34aSJunchao Zhang #endif 563076ba34aSJunchao Zhang Ci_ptr[r+1] += rrowlens[i]; /* add to length of row r in C */ 564076ba34aSJunchao Zhang } 565076ba34aSJunchao Zhang for (i=0; i<Cm; i++) Ci_ptr[i+1] += Ci_ptr[i]; /* to CSR format */ 566076ba34aSJunchao Zhang Cnnz = Ci_ptr[Cm]; 567076ba34aSJunchao Zhang 568076ba34aSJunchao Zhang /* For each received row, compute src & dst offsets in memory copying (from recv bufs abuf, jbuf to Ca, Cj) */ 569076ba34aSJunchao Zhang MatRowMapKokkosViewHost dstrowoffset_h("dstrowoffset_h",nrows); 570076ba34aSJunchao Zhang PetscInt *dstrowoffset_hptr = dstrowoffset_h.data(); 571076ba34aSJunchao Zhang PetscInt *currowlens; /* Current row lens. They are temp accumulators for row lens in C, to help build dstrowoffset */ 572076ba34aSJunchao Zhang 573076ba34aSJunchao Zhang ierr = PetscCalloc1(Cm,&currowlens);CHKERRQ(ierr); /* Init with zero, to be added to */ 574076ba34aSJunchao Zhang for (i=0; i<nrows; i++) { /* for each row I receive */ 575076ba34aSJunchao Zhang r = rows[i]; /* row id in C */ 576076ba34aSJunchao Zhang dstrowoffset_hptr[i] = Ci_ptr[r] + currowlens[r]; /* dst offset of the new place for each recv'ed row in Ca/Cj */ 577076ba34aSJunchao Zhang currowlens[r] += rrowlens[i]; /* accumulate to length of row r in C */ 578076ba34aSJunchao Zhang } 579076ba34aSJunchao Zhang ierr = PetscFree(currowlens);CHKERRQ(ierr); 580076ba34aSJunchao Zhang 581076ba34aSJunchao Zhang rrowlens--; 582076ba34aSJunchao Zhang for (i=0; i<nrows; i++) rrowlens[i+1] += rrowlens[i]; /* Change rrowlens[] to CSR format */ 583076ba34aSJunchao Zhang dstrowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),dstrowoffset_h); 584076ba34aSJunchao Zhang srcrowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),rrowlens_h); /* src offset of each recv'ed row in abuf/jbuf */ 585076ba34aSJunchao Zhang 586076ba34aSJunchao Zhang /* Build the reduceSF, which performs buffer to buffer send/recv */ 587076ba34aSJunchao Zhang PetscInt *sdisp,*rdisp; /* buffer to send offsets of roots, and buffer to recv them */ 588076ba34aSJunchao Zhang ierr = PetscMalloc2(niranks,&sdisp,nranks,&rdisp);CHKERRQ(ierr); 589076ba34aSJunchao Zhang for (i=0; i<niranks; i++) sdisp[i] = rrowlens[ioffset[i]]; 590076ba34aSJunchao Zhang for (i=0; i<nranks; i++) {ierr = MPI_Irecv(&rdisp[i],1,MPIU_INT,ranks[i],tag,comm,&reqs[i]);CHKERRMPI(ierr);} 591076ba34aSJunchao Zhang for (i=0; i<niranks; i++) {ierr = MPI_Isend(&sdisp[i],1,MPIU_INT,iranks[i],tag,comm,&reqs[nranks+i]);CHKERRMPI(ierr);} 592076ba34aSJunchao Zhang ierr = MPI_Waitall(niranks+nranks,reqs,MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 593076ba34aSJunchao Zhang 594076ba34aSJunchao Zhang /* Nonzeros in abuf/jbuf are roots and those in A are leaves */ 595076ba34aSJunchao Zhang PetscInt nroots2 = Cnnz,nleaves2 = Annz; 596076ba34aSJunchao Zhang PetscSFNode *iremote; 597076ba34aSJunchao Zhang ierr = PetscMalloc1(nleaves2,&iremote);CHKERRQ(ierr); /* no free, since memory will be given to reduceSF */ 598076ba34aSJunchao Zhang for (i=0; i<nranks; i++) { 599076ba34aSJunchao Zhang PetscInt rootbase = rdisp[i]; /* root offset at this root rank */ 600076ba34aSJunchao Zhang PetscInt leafbase = Ai[roffset[i]]; /* leaf base */ 601076ba34aSJunchao Zhang PetscInt nz = Ai[roffset[i+1]] - leafbase; /* I will send nz nonzeros to this root rank */ 602076ba34aSJunchao Zhang for (PetscInt k=0; k<nz; k++) { 603076ba34aSJunchao Zhang iremote[leafbase+k].rank = ranks[i]; 604076ba34aSJunchao Zhang iremote[leafbase+k].index = rootbase + k; 605076ba34aSJunchao Zhang } 606076ba34aSJunchao Zhang } 607076ba34aSJunchao Zhang ierr = PetscSFCreate(comm,&reduceSF);CHKERRQ(ierr); 608076ba34aSJunchao Zhang ierr = PetscSFSetGraph(reduceSF,nroots2,nleaves2,NULL,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 609076ba34aSJunchao Zhang ierr = PetscFree2(sdisp,rdisp);CHKERRQ(ierr); 610076ba34aSJunchao Zhang 611076ba34aSJunchao Zhang /* Reduce Aa, Ajg to abuf and jbuf */ 612076ba34aSJunchao Zhang 613076ba34aSJunchao Zhang /* If A uses local col ids, convert them to global ones before sending */ 614076ba34aSJunchao Zhang MatColIdxKokkosView Ajg; 615076ba34aSJunchao Zhang if (local) { 616076ba34aSJunchao Zhang Ajg = MatColIdxKokkosView("j",Annz); 617076ba34aSJunchao Zhang const MatColIdxKokkosView& Aj = akok->j_dual.view_device(); 618076ba34aSJunchao Zhang Kokkos::parallel_for(Annz,KOKKOS_LAMBDA(const PetscInt i) {Ajg(i) = l2g(Aj(i));}); 619076ba34aSJunchao Zhang } else { 620076ba34aSJunchao Zhang Ajg = akok->j_dual.view_device(); /* no data copy, just take a reference */ 621076ba34aSJunchao Zhang } 622076ba34aSJunchao Zhang 623076ba34aSJunchao Zhang MatColIdxKokkosView jbuf("jbuf",Cnnz); 624076ba34aSJunchao Zhang abuf = MatScalarKokkosView("abuf",Cnnz); 625076ba34aSJunchao Zhang ierr = PetscSFReduceBegin(reduceSF,MPIU_INT, Ajg.data(), jbuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 626076ba34aSJunchao Zhang ierr = PetscSFReduceEnd (reduceSF,MPIU_INT, Ajg.data(), jbuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 627076ba34aSJunchao Zhang ierr = PetscSFReduceBegin(reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 628076ba34aSJunchao Zhang ierr = PetscSFReduceEnd (reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 629076ba34aSJunchao Zhang 630076ba34aSJunchao Zhang /* Copy data from abuf, jbuf to Ca, Cj */ 631076ba34aSJunchao Zhang MatRowMapKokkosView Ci = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),Ci_h); /* Ci is an alias of Ci_h if no device */ 632076ba34aSJunchao Zhang MatColIdxKokkosView Cj("j",Cnnz); 633076ba34aSJunchao Zhang MatScalarKokkosView Ca("a",Cnnz); 634076ba34aSJunchao Zhang 635076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(nrows, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 636076ba34aSJunchao Zhang PetscInt i = t.league_rank(); 637076ba34aSJunchao Zhang PetscInt src = srcrowoffset(i), dst = dstrowoffset(i); 638076ba34aSJunchao Zhang PetscInt len = srcrowoffset(i+1) - srcrowoffset(i); 639076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,len), [&](PetscInt k) { 640076ba34aSJunchao Zhang Ca(dst+k) = abuf(src+k); 641076ba34aSJunchao Zhang Cj(dst+k) = jbuf(src+k); 642076ba34aSJunchao Zhang }); 643076ba34aSJunchao Zhang }); 644076ba34aSJunchao Zhang 645076ba34aSJunchao Zhang /* Build C with Ca, Ci, Cj */ 646076ba34aSJunchao Zhang C = KokkosCsrMatrix("csrmat",Cm,N,Cnnz,Ca,Ci,Cj); 647076ba34aSJunchao Zhang ierr = PetscFree2(srowlens,reqs);CHKERRQ(ierr); 64898921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unsupported MatReuse enum %d",reuse); 649076ba34aSJunchao Zhang PetscFunctionReturn(0); 650076ba34aSJunchao Zhang } 651076ba34aSJunchao Zhang 652076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithGlobalCSRMatrix - Set the diag and offdiag parts of a MATMPIAIJKOKKOS matrix by splitting a KokkosCsrMatrix 653076ba34aSJunchao Zhang 654076ba34aSJunchao Zhang Input Parameters: 655076ba34aSJunchao Zhang + C - the MATMPIAIJKOKKOS matrix, of size m,n,M,N 656076ba34aSJunchao Zhang . reuse - indicate whether the matrix has called this function before 657076ba34aSJunchao Zhang . csrmat - the KokkosCsrMatrix, of size m,N 658076ba34aSJunchao Zhang - Cdstart - when reuse == MAT_REUSE_MATRIX, it is an input parameter. For each row in csrmat, it stores the start of the first 659076ba34aSJunchao Zhang entry of the diag block of C in csrmat's j array. E.g, if row i has col ids = {0, 3, 4, 5, 7, 9} and the first diag 660076ba34aSJunchao Zhang entry is 5, then Cdstart[i] = 3. 661076ba34aSJunchao Zhang 662076ba34aSJunchao Zhang Output Parameters: 663076ba34aSJunchao Zhang + C - the updated MATMPIAIJKOKKOS matrix 664076ba34aSJunchao Zhang - Cdstart - when reuse == MAT_INITIAL_MATRIX, it is an output parameter 665076ba34aSJunchao Zhang 666076ba34aSJunchao Zhang Notes: 667076ba34aSJunchao Zhang Between calls with MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX, csrmat must have the same nonzero pattern 668076ba34aSJunchao Zhang */ 669076ba34aSJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithGlobalCSRMatrix(Mat C,MatReuse reuse,const KokkosCsrMatrix& csrmat,MatRowMapKokkosView& Cdstart) 670076ba34aSJunchao Zhang { 671076ba34aSJunchao Zhang PetscErrorCode ierr; 672076ba34aSJunchao Zhang const MatScalarKokkosView& Ca = csrmat.values; 673076ba34aSJunchao Zhang const ConstMatRowMapKokkosView& Ci = csrmat.graph.row_map; 674076ba34aSJunchao Zhang PetscInt m,n,N; 675076ba34aSJunchao Zhang 676076ba34aSJunchao Zhang PetscFunctionBegin; 677076ba34aSJunchao Zhang ierr = MatGetLocalSize(C,&m,&n);CHKERRQ(ierr); 678076ba34aSJunchao Zhang ierr = MatGetSize(C,NULL,&N);CHKERRQ(ierr); 679076ba34aSJunchao Zhang 680076ba34aSJunchao Zhang if (reuse == MAT_REUSE_MATRIX) { 681076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ*>(C->data); 682076ba34aSJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos*>(mpiaij->A->spptr); 683076ba34aSJunchao Zhang Mat_SeqAIJKokkos *bkok = static_cast<Mat_SeqAIJKokkos*>(mpiaij->B->spptr); 684076ba34aSJunchao Zhang const MatScalarKokkosView& Cda = akok->a_dual.view_device(),Coa = bkok->a_dual.view_device(); 685076ba34aSJunchao Zhang const MatRowMapKokkosView& Cdi = akok->i_dual.view_device(),Coi = bkok->i_dual.view_device(); 686076ba34aSJunchao Zhang 687076ba34aSJunchao Zhang /* Fill 'a' of Cd and Co on device */ 688076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(m, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 689076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 690076ba34aSJunchao Zhang PetscInt clen = Ci(i+1) - Ci(i); /* len of row i of C */ 691076ba34aSJunchao Zhang PetscInt cdlen = Cdi(i+1) - Cdi(i); /* len of row i of Cd */ 692076ba34aSJunchao Zhang PetscInt cdstart = Cdstart(i); /* [start, end) of row i of Cd in C */ 693076ba34aSJunchao Zhang PetscInt cdend = cdstart + cdlen; 694076ba34aSJunchao Zhang /* [0, clen) is cut into three blocks: [0, cdstart), [cdstart, cdend), [cdend, clen) */ 695076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, clen), [&](PetscInt k) { 696076ba34aSJunchao Zhang if (k < cdstart) { /* k in [0, cdstart) */ 697076ba34aSJunchao Zhang Coa(Coi(i)+k) = Ca(Ci(i)+k); 698076ba34aSJunchao Zhang } else if (k < cdend) { /* k in [cdstart, cdend) */ 699076ba34aSJunchao Zhang Cda(Cdi(i)+(k-cdstart)) = Ca(Ci(i)+k); 700076ba34aSJunchao Zhang } else { /* k in [cdend, clen) */ 701076ba34aSJunchao Zhang Coa(Coi(i)+k-cdlen) = Ca(Ci(i)+k); 702076ba34aSJunchao Zhang } 703076ba34aSJunchao Zhang }); 704076ba34aSJunchao Zhang }); 705076ba34aSJunchao Zhang 706076ba34aSJunchao Zhang akok->a_dual.modify_device(); 707076ba34aSJunchao Zhang bkok->a_dual.modify_device(); 708076ba34aSJunchao Zhang } else if (reuse == MAT_INITIAL_MATRIX) { 709076ba34aSJunchao Zhang Mat Cd,Co; 710076ba34aSJunchao Zhang const MatColIdxKokkosView& Cj = csrmat.graph.entries; 711076ba34aSJunchao Zhang MatRowMapKokkosDualView Cdi_dual("i",m+1),Coi_dual("i",m+1); 712076ba34aSJunchao Zhang MatRowMapKokkosView Cdi = Cdi_dual.view_device(),Coi = Coi_dual.view_device(); 713076ba34aSJunchao Zhang PetscInt cstart,cend; 714076ba34aSJunchao Zhang 715076ba34aSJunchao Zhang /* Note that each row of C is sorted by col ids. We want to find out how to cut each row into three blocks: 716076ba34aSJunchao Zhang left to the diag block, diag block, right to the diag block. The diag block have col ids in [cstart,cend). 717076ba34aSJunchao Zhang Suppose a row of C has len nonzeros, indexed by [0, len). We want to know two indices: cdstart and cdend, 718076ba34aSJunchao Zhang such that the three blocks are [0,cdstart), [cdstart,cdend), [cdend,len). The following code equivalentaly 719076ba34aSJunchao Zhang stores values of cdstart and cdend-cstart (aka Cdi[]) instead. 720076ba34aSJunchao Zhang */ 721076ba34aSJunchao Zhang Cdstart = MatRowMapKokkosView("Cdstart",m); 722076ba34aSJunchao Zhang ierr = PetscLayoutGetRange(C->cmap,&cstart,&cend);CHKERRQ(ierr); /* Not MatGetOwnershipRangeColumn() since C has not been preallocated yet */ 723076ba34aSJunchao Zhang 724076ba34aSJunchao Zhang /* I could use RangePolicy and one thread per row. But since each thread essentially does binary search, threads in a 725076ba34aSJunchao Zhang CUDA warp would completely diverge. So I use TeamPolicy with a team size 1. 726076ba34aSJunchao Zhang */ 727076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(m, 1),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 728076ba34aSJunchao Zhang Kokkos::single(Kokkos::PerTeam(t), [=] () { /* Only one thread works in a team */ 729076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 730076ba34aSJunchao Zhang PetscInt j,first,count,step; 731076ba34aSJunchao Zhang 732076ba34aSJunchao Zhang if (i == 0) { /* Set the first entry of the i arrays to zero on device, to be used in CSR */ 733076ba34aSJunchao Zhang Cdi(0) = 0; 734076ba34aSJunchao Zhang Coi(0) = 0; 735076ba34aSJunchao Zhang } 736076ba34aSJunchao Zhang 737076ba34aSJunchao Zhang /* Do std::lower_bound(Ci(i),Ci(i+1),cstart) on Cj[]. We use j as the iterator. lower_bound() returns 738076ba34aSJunchao Zhang in 'first' the first iterator with a value >= cstart, or last iterator if no such element is found. 739076ba34aSJunchao Zhang */ 740076ba34aSJunchao Zhang count = Ci(i+1)-Ci(i); 741076ba34aSJunchao Zhang first = Ci(i); 742076ba34aSJunchao Zhang while (count > 0) { 743076ba34aSJunchao Zhang j = first; 744076ba34aSJunchao Zhang step = count / 2; 745076ba34aSJunchao Zhang j += step; 746076ba34aSJunchao Zhang if (Cj(j) < cstart) { 747076ba34aSJunchao Zhang first = ++j; 748076ba34aSJunchao Zhang count -= step + 1; 749076ba34aSJunchao Zhang } else count = step; 750076ba34aSJunchao Zhang } 751076ba34aSJunchao Zhang Cdstart(i) = first - Ci(i); /* 'first' is the while-loop's output */ 752076ba34aSJunchao Zhang 753076ba34aSJunchao Zhang /* Do std::lower_bound(first,Ci(i+1),cend) on Cj[] */ 754076ba34aSJunchao Zhang count = Ci(i+1) - first; 755076ba34aSJunchao Zhang while (count > 0) { 756076ba34aSJunchao Zhang j = first; 757076ba34aSJunchao Zhang step = count / 2; 758076ba34aSJunchao Zhang j += step; 759076ba34aSJunchao Zhang if (Cj(j) < cend) { 760076ba34aSJunchao Zhang first = ++j; 761076ba34aSJunchao Zhang count -= step + 1; 762076ba34aSJunchao Zhang } else count = step; 763076ba34aSJunchao Zhang } 764076ba34aSJunchao Zhang Cdi(i+1) = first - (Ci(i)+Cdstart(i)); /* 'first' is the while-loop's output */ 765076ba34aSJunchao Zhang Coi(i+1) = (Ci(i+1)-Ci(i)) - Cdi(i+1); /* Co's row len = C's row len - Cd's row len */ 766076ba34aSJunchao Zhang }); 767076ba34aSJunchao Zhang }); 768076ba34aSJunchao Zhang 769076ba34aSJunchao Zhang /* Convert row lens in Cdi[], Coi[] to CSR format using inclusive scan, e.g., changing [0,1,2,3] into [0,1,3,6] */ 770076ba34aSJunchao Zhang Kokkos::parallel_scan(m+1,KOKKOS_LAMBDA(const PetscInt i,PetscInt& update,const bool final) { 771076ba34aSJunchao Zhang update += Cdi(i); 772076ba34aSJunchao Zhang if (final) Cdi(i) = update; 773076ba34aSJunchao Zhang }); 774076ba34aSJunchao Zhang Kokkos::parallel_scan(m+1,KOKKOS_LAMBDA(const PetscInt i,PetscInt& update,const bool final) { 775076ba34aSJunchao Zhang update += Coi(i); 776076ba34aSJunchao Zhang if (final) Coi(i) = update; 777076ba34aSJunchao Zhang }); 778076ba34aSJunchao Zhang 779076ba34aSJunchao Zhang /* Get Cdi, Coi on host (it is not a waste, since we do need them on host in 780076ba34aSJunchao Zhang MatCreateSeqAIJKokkosWithCSRMatrix() below), then get nnz of Cd and Co. 781076ba34aSJunchao Zhang */ 782076ba34aSJunchao Zhang Cdi_dual.modify_device(); 783076ba34aSJunchao Zhang Coi_dual.modify_device(); 784076ba34aSJunchao Zhang Cdi_dual.sync_host(); 785076ba34aSJunchao Zhang Coi_dual.sync_host(); 786076ba34aSJunchao Zhang PetscInt Cd_nnz = Cdi_dual.view_host().data()[m]; 787076ba34aSJunchao Zhang PetscInt Co_nnz = Coi_dual.view_host().data()[m]; 788076ba34aSJunchao Zhang 789076ba34aSJunchao Zhang /* With nnz, allocate a, j for Cd and Co */ 790076ba34aSJunchao Zhang MatColIdxKokkosDualView Cdj_dual("j",Cd_nnz),Coj_dual("j",Co_nnz); 791076ba34aSJunchao Zhang MatScalarKokkosDualView Cda_dual("a",Cd_nnz),Coa_dual("a",Co_nnz); 792076ba34aSJunchao Zhang 793076ba34aSJunchao Zhang /* Fill a, j of Cd and Co on device */ 794076ba34aSJunchao Zhang MatColIdxKokkosView Cdj = Cdj_dual.view_device(),Coj = Coj_dual.view_device(); 795076ba34aSJunchao Zhang MatScalarKokkosView Cda = Cda_dual.view_device(),Coa = Coa_dual.view_device(); 796076ba34aSJunchao Zhang 797076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(m, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 798076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 799076ba34aSJunchao Zhang PetscInt clen = Ci(i+1) - Ci(i); /* len of row i of C */ 800076ba34aSJunchao Zhang PetscInt cdlen = Cdi(i+1) - Cdi(i); /* len of row i of Cd */ 801076ba34aSJunchao Zhang PetscInt cdstart = Cdstart(i); /* [start, end) of row i of Cd in C */ 802076ba34aSJunchao Zhang PetscInt cdend = cdstart + cdlen; 803076ba34aSJunchao Zhang /* [0, clen) is cut into three blocks: [0, cdstart), [cdstart, cdend), [cdend, clen) */ 804076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, clen), [&](PetscInt k) { 805076ba34aSJunchao Zhang if (k < cdstart) { /* k in [0, cdstart) */ 806076ba34aSJunchao Zhang Coa(Coi(i)+k) = Ca(Ci(i)+k); 807076ba34aSJunchao Zhang Coj(Coi(i)+k) = Cj(Ci(i)+k); 808076ba34aSJunchao Zhang } else if (k < cdend) { /* k in [cdstart, cdend) */ 809076ba34aSJunchao Zhang Cda(Cdi(i)+(k-cdstart)) = Ca(Ci(i)+k); 810076ba34aSJunchao Zhang Cdj(Cdi(i)+(k-cdstart)) = Cj(Ci(i)+k) - cstart; /* Use local col ids in Cdj */ 811076ba34aSJunchao Zhang } else { /* k in [cdend, clen) */ 812076ba34aSJunchao Zhang Coa(Coi(i)+k-cdlen) = Ca(Ci(i)+k); 813076ba34aSJunchao Zhang Coj(Coi(i)+k-cdlen) = Cj(Ci(i)+k); 814076ba34aSJunchao Zhang } 815076ba34aSJunchao Zhang }); 816076ba34aSJunchao Zhang }); 817076ba34aSJunchao Zhang 818076ba34aSJunchao Zhang Cdj_dual.modify_device(); 819076ba34aSJunchao Zhang Cda_dual.modify_device(); 820076ba34aSJunchao Zhang Coj_dual.modify_device(); 821076ba34aSJunchao Zhang Coa_dual.modify_device(); 822076ba34aSJunchao Zhang /* With a, i, j for Cd and Co, finally build Cd, Co and then C. Their offloadmask will be set in each's MatAssemblyEnd */ 823076ba34aSJunchao Zhang auto cdkok = new Mat_SeqAIJKokkos(m,n,Cd_nnz,Cdi_dual,Cdj_dual,Cda_dual); 824076ba34aSJunchao Zhang auto cokok = new Mat_SeqAIJKokkos(m,N,Co_nnz,Coi_dual,Coj_dual,Coa_dual); 825076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,cdkok,&Cd);CHKERRQ(ierr); 826076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,cokok,&Co);CHKERRQ(ierr); 827076ba34aSJunchao Zhang ierr = MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(C,Cd,Co);CHKERRQ(ierr); /* Coj will be converted to local ids within */ 828076ba34aSJunchao Zhang } 829076ba34aSJunchao Zhang PetscFunctionReturn(0); 830076ba34aSJunchao Zhang } 831076ba34aSJunchao Zhang 832076ba34aSJunchao Zhang /* MatSeqAIJCompactOutExtraColumns_SeqAIJKokkos - Compact a SEQAIJKOKKS matrix's global col ids. 833076ba34aSJunchao Zhang 834076ba34aSJunchao Zhang It is similar to MatSeqAIJCompactOutExtraColumns_SeqAIJ, but it applies to SEQAIJKOKKOS and returns the l2g map in Kokkos view. 835076ba34aSJunchao Zhang 836076ba34aSJunchao Zhang Input Parameters: 837076ba34aSJunchao Zhang + C - the MATMPIAIJKOKKOS matrix, of size m,n,M,N 838076ba34aSJunchao Zhang . reuse - indicate whether the matrix has called this function before 839076ba34aSJunchao Zhang . csrmat - the KokkosCsrMatrix, of size m,N 840076ba34aSJunchao Zhang - Cdoffset - when reuse == MAT_REUSE_MATRIX, it is an input parameter. For each row in csrmat, it stores the offset of the first 841076ba34aSJunchao Zhang entry of the diag block of C in csrmat's j array. 842076ba34aSJunchao Zhang 843076ba34aSJunchao Zhang Output Parameters: 844076ba34aSJunchao Zhang + C - the updated MATMPIAIJKOKKOS matrix 845076ba34aSJunchao Zhang - Cdoffset - when reuse == MAT_INITIAL_MATRIX, it is an output parameter 846076ba34aSJunchao Zhang 847076ba34aSJunchao Zhang Notes: the input matrix's col ids and col size will be changed. 848076ba34aSJunchao Zhang */ 849076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJCompactOutExtraColumns_SeqAIJKokkos(Mat C,MatColIdxKokkosView& l2g) 850076ba34aSJunchao Zhang { 851076ba34aSJunchao Zhang PetscErrorCode ierr; 852076ba34aSJunchao Zhang Mat_SeqAIJKokkos *ckok; 853076ba34aSJunchao Zhang ISLocalToGlobalMapping l2gmap; 854076ba34aSJunchao Zhang const PetscInt *garray; 855076ba34aSJunchao Zhang PetscInt sz; 856076ba34aSJunchao Zhang 857076ba34aSJunchao Zhang PetscFunctionBegin; 858076ba34aSJunchao Zhang /* Compact P_other's global col ids and col size. We do it since we guess with local ids KK might be more memory scalable */ 859076ba34aSJunchao Zhang ierr = MatSeqAIJCompactOutExtraColumns_SeqAIJ(C,&l2gmap);CHKERRQ(ierr); 860076ba34aSJunchao Zhang ckok = static_cast<Mat_SeqAIJKokkos*>(C->spptr); 861076ba34aSJunchao Zhang ckok->j_dual.modify_host(); /* P_other's j is modified on host; we need to sync it on device */ 862076ba34aSJunchao Zhang ckok->j_dual.sync_device(); 863076ba34aSJunchao Zhang ckok->SetColSize(C->cmap->n); /* Update col size of the csrmat in spptr */ 864076ba34aSJunchao Zhang 865076ba34aSJunchao Zhang /* Build l2g -- the local to global mapping of C's cols */ 866076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingGetIndices(l2gmap,&garray);CHKERRQ(ierr); 867076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingGetSize(l2gmap,&sz);CHKERRQ(ierr); 8689ace16cdSJacob Faibussowitsch PetscAssertFalse(C->cmap->n != sz,PETSC_COMM_SELF,PETSC_ERR_PLIB,"matrix column size(%" PetscInt_FMT ") != l2g mapping size(%" PetscInt_FMT ")", C->cmap->n,sz); 869076ba34aSJunchao Zhang 870076ba34aSJunchao Zhang ConstMatColIdxKokkosViewHost tmp(garray,sz); 871076ba34aSJunchao Zhang l2g = MatColIdxKokkosView("l2g",sz); 872076ba34aSJunchao Zhang Kokkos::deep_copy(l2g,tmp); 873076ba34aSJunchao Zhang 874076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingRestoreIndices(l2gmap,&garray);CHKERRQ(ierr); 875076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingDestroy(&l2gmap);CHKERRQ(ierr); 876076ba34aSJunchao Zhang PetscFunctionReturn(0); 877076ba34aSJunchao Zhang } 878076ba34aSJunchao Zhang 879076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AB - AB flavor of MatProductSymbolic_MPIAIJKokkos 880076ba34aSJunchao Zhang 881076ba34aSJunchao Zhang Input Parameters: 882076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 883076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 884076ba34aSJunchao Zhang . B - an MPIAIJKOKKOS matrix 885076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data when computing AB. Persist from symbolic to numeric operations. 886076ba34aSJunchao Zhang 887076ba34aSJunchao Zhang Notes: The local part of the result C is stored as mm->C_global, which is of type KokkosCsrMatrix and uses global col ids. 888076ba34aSJunchao Zhang */ 889076ba34aSJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AB(Mat_Product *product,Mat A,Mat B,MatMatStruct_AB *mm) 890076ba34aSJunchao Zhang { 891076ba34aSJunchao Zhang PetscErrorCode ierr; 892076ba34aSJunchao Zhang Mat_MPIAIJ *a = static_cast<Mat_MPIAIJ*>(A->data); 893076ba34aSJunchao Zhang Mat Ad = a->A,Ao = a->B; /* diag and offdiag of A */ 894076ba34aSJunchao Zhang IS glob = NULL; 895076ba34aSJunchao Zhang const PetscInt *garray; 896076ba34aSJunchao Zhang PetscInt N = B->cmap->N,sz; 897076ba34aSJunchao Zhang ConstMatColIdxKokkosView l2g1; /* two temp maps mapping local col ids to global ones */ 898076ba34aSJunchao Zhang MatColIdxKokkosView l2g2; 899076ba34aSJunchao Zhang Mat C1,C2; /* intermediate matrices */ 900076ba34aSJunchao Zhang 901076ba34aSJunchao Zhang PetscFunctionBegin; 902076ba34aSJunchao Zhang /* C1 = Ad * B_local. B_local is a matrix got by merging Bd and Bo, and uses local col ids */ 903076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_INITIAL_MATRIX,&glob,&mm->B_local);CHKERRQ(ierr); 904076ba34aSJunchao Zhang ierr = MatProductCreate(Ad,mm->B_local,NULL,&C1);CHKERRQ(ierr); 905076ba34aSJunchao Zhang ierr = MatProductSetType(C1,MATPRODUCT_AB);CHKERRQ(ierr); 906076ba34aSJunchao Zhang ierr = MatProductSetFill(C1,product->fill);CHKERRQ(ierr); 907076ba34aSJunchao Zhang C1->product->api_user = product->api_user; 908076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C1);CHKERRQ(ierr); 9099ace16cdSJacob Faibussowitsch PetscAssertFalse(!C1->ops->productsymbolic,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C1->product->type]); 910076ba34aSJunchao Zhang ierr = (*C1->ops->productsymbolic)(C1);CHKERRQ(ierr); 911076ba34aSJunchao Zhang 912076ba34aSJunchao Zhang ierr = ISGetIndices(glob,&garray);CHKERRQ(ierr); 913076ba34aSJunchao Zhang ierr = ISGetSize(glob,&sz);CHKERRQ(ierr); 914076ba34aSJunchao Zhang const auto& tmp = ConstMatColIdxKokkosViewHost(garray,sz); /* wrap garray as a view */ 915076ba34aSJunchao Zhang l2g1 = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),tmp); /* maybe just an alias to tmp, so we restore garray at the very end */ 916076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(C1,N,l2g1,mm->C1_global); 917076ba34aSJunchao Zhang 918076ba34aSJunchao Zhang /* C2 = Ao * B_other. B_other is a matrix consisting of needed rows of B gathered from other procs */ 919076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosBcast(mm->B_local,MAT_INITIAL_MATRIX,N,l2g1,a->Mvctx,mm->sf, 920076ba34aSJunchao Zhang mm->abuf,mm->rows,mm->rowoffset,mm->B_other);CHKERRQ(ierr); 921076ba34aSJunchao Zhang 922076ba34aSJunchao Zhang /* Compact B_other to use local ids as we guess KK spgemm is more memroy scalable with that; We could skip the compaction to simplify code */ 923076ba34aSJunchao Zhang ierr = MatSeqAIJCompactOutExtraColumns_SeqAIJKokkos(mm->B_other,l2g2);CHKERRQ(ierr); 924076ba34aSJunchao Zhang ierr = MatProductCreate(Ao,mm->B_other,NULL,&C2);CHKERRQ(ierr); 925076ba34aSJunchao Zhang ierr = MatProductSetType(C2,MATPRODUCT_AB);CHKERRQ(ierr); 926076ba34aSJunchao Zhang ierr = MatProductSetFill(C2,product->fill);CHKERRQ(ierr); 927076ba34aSJunchao Zhang C2->product->api_user = product->api_user; 928076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C2);CHKERRQ(ierr); 9299ace16cdSJacob Faibussowitsch PetscAssertFalse(!C2->ops->productsymbolic,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C2->product->type]); 930076ba34aSJunchao Zhang ierr = (*C2->ops->productsymbolic)(C2);CHKERRQ(ierr); 931076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(C2,N,l2g2,mm->C2_global); 932076ba34aSJunchao Zhang 933076ba34aSJunchao Zhang /* C = C1 + C2. We actually use their global col ids versions in adding */ 934076ba34aSJunchao Zhang mm->kh.create_spadd_handle(false); /* Input C1, C2 are NOT sorted, since B_local, B_other are not */ 935076ba34aSJunchao Zhang KokkosSparse::spadd_symbolic(&mm->kh,mm->C1_global,mm->C2_global,mm->C_global); 936076ba34aSJunchao Zhang /* Have to do numeric since spadd_symbolic does not really populate column indices of the result matrix */ 937076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&mm->kh,(MatScalarType)1.0,mm->C1_global,(MatScalarType)1.0,mm->C2_global,mm->C_global); 938076ba34aSJunchao Zhang 939076ba34aSJunchao Zhang mm->C1 = C1; 940076ba34aSJunchao Zhang mm->C2 = C2; 941076ba34aSJunchao Zhang ierr = ISRestoreIndices(glob,&garray);CHKERRQ(ierr); 942076ba34aSJunchao Zhang ierr = ISDestroy(&glob);CHKERRQ(ierr); 943076ba34aSJunchao Zhang PetscFunctionReturn(0); 944076ba34aSJunchao Zhang } 945076ba34aSJunchao Zhang 946076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AtB - A^tB flavor of MatProductSymbolic_MPIAIJKokkos 947076ba34aSJunchao Zhang 948076ba34aSJunchao Zhang Input Parameters: 949076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 950076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 951076ba34aSJunchao Zhang . B - a SEQAIJKOKKOS matrix. It works as if A^t is multiplied by a parallel matrix made up of Bs on each rank. 952076ba34aSJunchao Zhang . localB - Does B use local col ids? If false, then B is already in global col ids. 953076ba34aSJunchao Zhang . N - col size of the "parallel B matrix". It implies B's global col ids are in range of [0,N) and N is the same across the communicator. 954076ba34aSJunchao Zhang . l2g - If localB, then l2g maps B's local col ids to global ones. 955076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data in AtB 956076ba34aSJunchao Zhang 957076ba34aSJunchao Zhang Notes: The local part of the result C is stored as mm->C_global, which is of type KokkosCsrMatrix and uses global col ids. 958076ba34aSJunchao Zhang */ 959076ba34aSJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AtB(Mat_Product *product,Mat A,Mat B,PetscBool localB,PetscInt N,const ConstMatColIdxKokkosView& l2g,MatMatStruct_AtB *mm) 960076ba34aSJunchao Zhang { 961076ba34aSJunchao Zhang PetscErrorCode ierr; 962076ba34aSJunchao Zhang Mat_MPIAIJ *a = static_cast<Mat_MPIAIJ*>(A->data); 963076ba34aSJunchao Zhang Mat Ad = a->A,Ao = a->B; /* diag and offdiag of A */ 964076ba34aSJunchao Zhang Mat C1,C2; /* intermediate matrices */ 965076ba34aSJunchao Zhang 966076ba34aSJunchao Zhang PetscFunctionBegin; 967076ba34aSJunchao Zhang /* C1 = Ad^t * B */ 968076ba34aSJunchao Zhang ierr = MatProductCreate(Ad,B,NULL,&C1);CHKERRQ(ierr); 969076ba34aSJunchao Zhang ierr = MatProductSetType(C1,MATPRODUCT_AtB);CHKERRQ(ierr); 970076ba34aSJunchao Zhang ierr = MatProductSetFill(C1,product->fill);CHKERRQ(ierr); 971076ba34aSJunchao Zhang C1->product->api_user = product->api_user; 972076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C1);CHKERRQ(ierr); 9739ace16cdSJacob Faibussowitsch PetscAssertFalse(!C1->ops->productsymbolic,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C1->product->type]); 974076ba34aSJunchao Zhang ierr = (*C1->ops->productsymbolic)(C1);CHKERRQ(ierr); 975076ba34aSJunchao Zhang 976076ba34aSJunchao Zhang if (localB) {ierr = MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(C1,N,l2g,mm->C1_global);} 977076ba34aSJunchao Zhang else mm->C1_global = static_cast<Mat_SeqAIJKokkos*>(C1->spptr)->csrmat; /* the csrmat already uses global col ids */ 978076ba34aSJunchao Zhang 979076ba34aSJunchao Zhang /* C2 = Ao^t * B */ 980076ba34aSJunchao Zhang ierr = MatProductCreate(Ao,B,NULL,&C2);CHKERRQ(ierr); 981076ba34aSJunchao Zhang ierr = MatProductSetType(C2,MATPRODUCT_AtB);CHKERRQ(ierr); 982076ba34aSJunchao Zhang ierr = MatProductSetFill(C2,product->fill);CHKERRQ(ierr); 983076ba34aSJunchao Zhang C2->product->api_user = product->api_user; 984076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C2);CHKERRQ(ierr); 9859ace16cdSJacob Faibussowitsch PetscAssertFalse(!C2->ops->productsymbolic,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C2->product->type]); 986076ba34aSJunchao Zhang ierr = (*C2->ops->productsymbolic)(C2);CHKERRQ(ierr); 987076ba34aSJunchao Zhang 988076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosReduce(C2,MAT_INITIAL_MATRIX,localB,N,l2g,a->Mvctx,mm->sf,mm->abuf, 989076ba34aSJunchao Zhang mm->srcrowoffset,mm->dstrowoffset,mm->C2_global);CHKERRQ(ierr); 990076ba34aSJunchao Zhang 991076ba34aSJunchao Zhang mm->kh.create_spadd_handle(false); /* Input C1, C2 are NOT sorted, since B may be not */ 992076ba34aSJunchao Zhang KokkosSparse::spadd_symbolic(&mm->kh,mm->C1_global,mm->C2_global,mm->C_global); 993076ba34aSJunchao Zhang /* Have to do numeric since spadd_symbolic does not really populate column indices of the result matrix */ 994076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&mm->kh,(MatScalarType)1.0,mm->C1_global,(MatScalarType)1.0,mm->C2_global,mm->C_global); 995076ba34aSJunchao Zhang mm->C1 = C1; 996076ba34aSJunchao Zhang mm->C2 = C2; 997076ba34aSJunchao Zhang PetscFunctionReturn(0); 998076ba34aSJunchao Zhang } 999076ba34aSJunchao Zhang 1000076ba34aSJunchao Zhang PetscErrorCode MatProductNumeric_MPIAIJKokkos(Mat C) 1001076ba34aSJunchao Zhang { 1002076ba34aSJunchao Zhang PetscErrorCode ierr; 1003076ba34aSJunchao Zhang Mat_Product *product = C->product; 1004076ba34aSJunchao Zhang MatProductType ptype; 1005076ba34aSJunchao Zhang MatProductData_MPIAIJKokkos *mmdata; 1006076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 1007076ba34aSJunchao Zhang MatMatStruct_AB *ab; 1008076ba34aSJunchao Zhang MatMatStruct_AtB *atb; 1009076ba34aSJunchao Zhang Mat A,B,Ad,Ao,Bd,Bo; 1010076ba34aSJunchao Zhang const MatScalarType one = 1.0; /* Not use literal 1.0 directly, to avoid wrong template instantiation in KokkosSparse::spadd_numeric */ 1011076ba34aSJunchao Zhang 1012076ba34aSJunchao Zhang PetscFunctionBegin; 1013076ba34aSJunchao Zhang MatCheckProduct(C,1); 1014076ba34aSJunchao Zhang mmdata = static_cast<MatProductData_MPIAIJKokkos*>(product->data); 1015076ba34aSJunchao Zhang ptype = product->type; 1016076ba34aSJunchao Zhang A = product->A; 1017076ba34aSJunchao Zhang B = product->B; 1018076ba34aSJunchao Zhang Ad = static_cast<Mat_MPIAIJ*>(A->data)->A; 1019076ba34aSJunchao Zhang Ao = static_cast<Mat_MPIAIJ*>(A->data)->B; 1020076ba34aSJunchao Zhang Bd = static_cast<Mat_MPIAIJ*>(B->data)->A; 1021076ba34aSJunchao Zhang Bo = static_cast<Mat_MPIAIJ*>(B->data)->B; 1022076ba34aSJunchao Zhang 1023076ba34aSJunchao Zhang if (mmdata->reusesym) { /* We reached here through e.g., MatMatMult(A,B,MAT_INITIAL_MATRIX,..,C), where symbolic/numeric are combined */ 1024076ba34aSJunchao Zhang mmdata->reusesym = PETSC_FALSE; /* So that next time when user calls MatMatMult(E,F,MAT_REUSE_MATRIX,..,C), we still do numeric */ 1025076ba34aSJunchao Zhang ab = mmdata->mmAB; 1026076ba34aSJunchao Zhang atb = mmdata->mmAtB; 1027076ba34aSJunchao Zhang if (ab) { 1028076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(ab->C1->product->data)->reusesym = PETSC_FALSE; 1029076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(ab->C2->product->data)->reusesym = PETSC_FALSE; 1030076ba34aSJunchao Zhang } 1031076ba34aSJunchao Zhang if (atb) { 1032076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(atb->C1->product->data)->reusesym = PETSC_FALSE; 1033076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(atb->C2->product->data)->reusesym = PETSC_FALSE; 1034076ba34aSJunchao Zhang } 1035076ba34aSJunchao Zhang PetscFunctionReturn(0); 1036076ba34aSJunchao Zhang } 1037076ba34aSJunchao Zhang 1038076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 1039076ba34aSJunchao Zhang ab = mmdata->mmAB; 1040076ba34aSJunchao Zhang /* C1 = Ad * B_local */ 10419ace16cdSJacob Faibussowitsch PetscAssertFalse(!ab->C1->ops->productnumeric || !ab->C2->ops->productnumeric,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing numeric op for MATPRODUCT_AB"); 1042076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_REUSE_MATRIX,NULL/*glob*/,&ab->B_local);CHKERRQ(ierr); 10439ace16cdSJacob Faibussowitsch PetscAssertFalse(ab->C1->product->B != ab->B_local,PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AB, internal mat product matrix C1->B has unexpectedly changed"); 1044076ba34aSJunchao Zhang if (ab->C1->product->A != Ad) {ierr = MatProductReplaceMats(Ad,NULL,NULL,ab->C1);CHKERRQ(ierr);} 1045076ba34aSJunchao Zhang ierr = (*ab->C1->ops->productnumeric)(ab->C1);CHKERRQ(ierr); 1046076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosBcast(ab->B_local,MAT_REUSE_MATRIX,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,ab->sf, 1047076ba34aSJunchao Zhang ab->abuf,ab->rows,ab->rowoffset,ab->B_other);CHKERRQ(ierr); 1048076ba34aSJunchao Zhang /* C2 = Ao * B_other */ 10499ace16cdSJacob Faibussowitsch PetscAssertFalse(ab->C2->product->B != ab->B_other,PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AB, internal mat product matrix C2->B has unexpectedly changed"); 1050076ba34aSJunchao Zhang if (ab->C1->product->A != Ao) {ierr = MatProductReplaceMats(Ao,NULL,NULL,ab->C2);CHKERRQ(ierr);} 1051076ba34aSJunchao Zhang ierr = (*ab->C2->ops->productnumeric)(ab->C2);CHKERRQ(ierr); 1052076ba34aSJunchao Zhang /* C = C1_global + C2_global */ 1053076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&ab->kh,one,ab->C1_global,one,ab->C2_global,ab->C_global); 1054076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(ab); 1055076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 1056076ba34aSJunchao Zhang atb = mmdata->mmAtB; 10579ace16cdSJacob Faibussowitsch PetscAssertFalse(!atb->C1->ops->productnumeric || !atb->C2->ops->productnumeric,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing numeric op for MATPRODUCT_AtB"); 1058076ba34aSJunchao Zhang /* C1 = Ad^t * B_local */ 1059076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_REUSE_MATRIX,NULL/*glob*/,&atb->B_local);CHKERRQ(ierr); 10609ace16cdSJacob Faibussowitsch PetscAssertFalse(atb->C1->product->B != atb->B_local,PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AtB, internal mat product matrix C1->B has unexpectedly changed"); 1061076ba34aSJunchao Zhang if (atb->C1->product->A != Ad) {ierr = MatProductReplaceMats(Ad,NULL,NULL,atb->C1);CHKERRQ(ierr);} 1062076ba34aSJunchao Zhang ierr = (*atb->C1->ops->productnumeric)(atb->C1);CHKERRQ(ierr); 1063076ba34aSJunchao Zhang 1064076ba34aSJunchao Zhang /* C2 = Ao^t * B_local */ 10659ace16cdSJacob Faibussowitsch PetscAssertFalse(atb->C2->product->B != atb->B_local,PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AtB, internal mat product matrix C2->B has unexpectedly changed"); 1066076ba34aSJunchao Zhang if (atb->C2->product->A != Ao) {ierr = MatProductReplaceMats(Ao,NULL,NULL,atb->C2);CHKERRQ(ierr);} 1067076ba34aSJunchao Zhang ierr = (*atb->C2->ops->productnumeric)(atb->C2);CHKERRQ(ierr); 1068076ba34aSJunchao Zhang /* Form C2_global */ 1069076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosReduce(atb->C2,MAT_REUSE_MATRIX,PETSC_TRUE,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,atb->sf, 1070076ba34aSJunchao Zhang atb->abuf,atb->srcrowoffset,atb->dstrowoffset,atb->C2_global);CHKERRQ(ierr); 1071076ba34aSJunchao Zhang /* C = C1_global + C2_global */ 1072076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&atb->kh,one,atb->C1_global,one,atb->C2_global,atb->C_global); 1073076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1074076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { /* BtAB */ 1075076ba34aSJunchao Zhang ab = mmdata->mmAB; 1076076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_REUSE_MATRIX,NULL/*glob*/,&ab->B_local);CHKERRQ(ierr); 1077076ba34aSJunchao Zhang 1078076ba34aSJunchao Zhang /* ab->C1 = Ad * B_local */ 10799ace16cdSJacob Faibussowitsch PetscAssertFalse(ab->C1->product->B != ab->B_local,PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_PtAP, internal mat product matrix ab->C1->B has unexpectedly changed"); 1080076ba34aSJunchao Zhang if (ab->C1->product->A != Ad) {ierr = MatProductReplaceMats(Ad,NULL,NULL,ab->C1);CHKERRQ(ierr);} 1081076ba34aSJunchao Zhang ierr = (*ab->C1->ops->productnumeric)(ab->C1);CHKERRQ(ierr); 1082076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosBcast(ab->B_local,MAT_REUSE_MATRIX,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,ab->sf, 1083076ba34aSJunchao Zhang ab->abuf,ab->rows,ab->rowoffset,ab->B_other);CHKERRQ(ierr); 1084076ba34aSJunchao Zhang /* ab->C2 = Ao * B_other */ 1085076ba34aSJunchao Zhang if (ab->C2->product->A != Ao) {ierr = MatProductReplaceMats(Ao,NULL,NULL,ab->C2);CHKERRQ(ierr);} 1086076ba34aSJunchao Zhang ierr = (*ab->C2->ops->productnumeric)(ab->C2);CHKERRQ(ierr); /* C2 = Ao * B_other */ 1087076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&ab->kh,one,ab->C1_global,one,ab->C2_global,ab->C_global); 1088076ba34aSJunchao Zhang 1089076ba34aSJunchao Zhang /* atb->C1 = Bd^t * ab->C_petsc */ 1090076ba34aSJunchao Zhang atb = mmdata->mmAtB; 10919ace16cdSJacob Faibussowitsch PetscAssertFalse(atb->C1->product->B != ab->C_petsc,PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_PtAP, internal mat product matrix atb->C1->B has unexpectedly changed"); 1092076ba34aSJunchao Zhang if (atb->C1->product->A != Bd) {ierr = MatProductReplaceMats(Bd,NULL,NULL,atb->C1);CHKERRQ(ierr);} 1093076ba34aSJunchao Zhang ierr = (*atb->C1->ops->productnumeric)(atb->C1);CHKERRQ(ierr); 1094076ba34aSJunchao Zhang /* atb->C2 = Bo^t * ab->C_petsc */ 1095076ba34aSJunchao Zhang if (atb->C2->product->A != Bo) {ierr = MatProductReplaceMats(Bo,NULL,NULL,atb->C2);CHKERRQ(ierr);} 1096076ba34aSJunchao Zhang ierr = (*atb->C2->ops->productnumeric)(atb->C2);CHKERRQ(ierr); 1097076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosReduce(atb->C2,MAT_REUSE_MATRIX,PETSC_FALSE,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,atb->sf, 1098076ba34aSJunchao Zhang atb->abuf,atb->srcrowoffset,atb->dstrowoffset,atb->C2_global);CHKERRQ(ierr); 1099076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&atb->kh,one,atb->C1_global,one,atb->C2_global,atb->C_global); 1100076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1101076ba34aSJunchao Zhang } 1102076ba34aSJunchao Zhang /* Split C_global to form C */ 1103076ba34aSJunchao Zhang ierr = MatSetMPIAIJKokkosWithGlobalCSRMatrix(C,MAT_REUSE_MATRIX,mm->C_global,mm->Cdstart);CHKERRQ(ierr); 1104076ba34aSJunchao Zhang PetscFunctionReturn(0); 1105076ba34aSJunchao Zhang } 1106076ba34aSJunchao Zhang 1107076ba34aSJunchao Zhang PetscErrorCode MatProductSymbolic_MPIAIJKokkos(Mat C) 1108076ba34aSJunchao Zhang { 1109076ba34aSJunchao Zhang PetscErrorCode ierr; 1110076ba34aSJunchao Zhang Mat A,B; 1111076ba34aSJunchao Zhang Mat_Product *product = C->product; 1112076ba34aSJunchao Zhang MatProductType ptype; 1113076ba34aSJunchao Zhang MatProductData_MPIAIJKokkos *mmdata; 1114076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 1115076ba34aSJunchao Zhang IS glob = NULL; 1116076ba34aSJunchao Zhang const PetscInt *garray; 1117076ba34aSJunchao Zhang PetscInt m,n,M,N,sz; 1118076ba34aSJunchao Zhang ConstMatColIdxKokkosView l2g; /* map local col ids to global ones */ 1119076ba34aSJunchao Zhang 1120076ba34aSJunchao Zhang PetscFunctionBegin; 1121076ba34aSJunchao Zhang MatCheckProduct(C,1); 11229ace16cdSJacob Faibussowitsch PetscAssertFalse(product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 1123076ba34aSJunchao Zhang ptype = product->type; 1124076ba34aSJunchao Zhang A = product->A; 1125076ba34aSJunchao Zhang B = product->B; 1126076ba34aSJunchao Zhang 1127076ba34aSJunchao Zhang switch (ptype) { 1128076ba34aSJunchao Zhang case MATPRODUCT_AB: m = A->rmap->n; n = B->cmap->n; M = A->rmap->N; N = B->cmap->N; break; 1129076ba34aSJunchao Zhang case MATPRODUCT_AtB: m = A->cmap->n; n = B->cmap->n; M = A->cmap->N; N = B->cmap->N; break; 1130076ba34aSJunchao Zhang case MATPRODUCT_PtAP: m = B->cmap->n; n = B->cmap->n; M = B->cmap->N; N = B->cmap->N; break; /* BtAB */ 113198921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Not for product type %s",MatProductTypes[ptype]); 1132076ba34aSJunchao Zhang } 1133076ba34aSJunchao Zhang 1134076ba34aSJunchao Zhang ierr = MatSetSizes(C,m,n,M,N);CHKERRQ(ierr); 1135076ba34aSJunchao Zhang ierr = PetscLayoutSetUp(C->rmap);CHKERRQ(ierr); 1136076ba34aSJunchao Zhang ierr = PetscLayoutSetUp(C->cmap);CHKERRQ(ierr); 1137076ba34aSJunchao Zhang ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 1138076ba34aSJunchao Zhang 1139076ba34aSJunchao Zhang mmdata = new MatProductData_MPIAIJKokkos(); 1140076ba34aSJunchao Zhang mmdata->reusesym = product->api_user; 1141076ba34aSJunchao Zhang 1142076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 1143076ba34aSJunchao Zhang mmdata->mmAB = new MatMatStruct_AB(); 1144076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AB(product,A,B,mmdata->mmAB);CHKERRQ(ierr); 1145076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(mmdata->mmAB); 1146076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 1147076ba34aSJunchao Zhang mmdata->mmAtB = new MatMatStruct_AtB(); 1148076ba34aSJunchao Zhang auto atb = mmdata->mmAtB; 1149076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_INITIAL_MATRIX,&glob,&atb->B_local);CHKERRQ(ierr); 1150076ba34aSJunchao Zhang ierr = ISGetIndices(glob,&garray);CHKERRQ(ierr); 1151076ba34aSJunchao Zhang ierr = ISGetSize(glob,&sz);CHKERRQ(ierr); 1152076ba34aSJunchao Zhang l2g = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),ConstMatColIdxKokkosViewHost(garray,sz)); 1153076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AtB(product,A,atb->B_local,PETSC_TRUE,N,l2g,atb);CHKERRQ(ierr); 1154076ba34aSJunchao Zhang ierr = ISRestoreIndices(glob,&garray);CHKERRQ(ierr); 1155076ba34aSJunchao Zhang ierr = ISDestroy(&glob);CHKERRQ(ierr); 1156076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1157076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { /* BtAB */ 1158076ba34aSJunchao Zhang mmdata->mmAB = new MatMatStruct_AB(); /* tmp=A*B */ 1159076ba34aSJunchao Zhang mmdata->mmAtB = new MatMatStruct_AtB(); /* C=B^t*tmp */ 1160076ba34aSJunchao Zhang auto ab = mmdata->mmAB; 1161076ba34aSJunchao Zhang auto atb = mmdata->mmAtB; 1162076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AB(product,A,B,ab);CHKERRQ(ierr); 1163076ba34aSJunchao Zhang auto tmp = new Mat_SeqAIJKokkos(ab->C_global); /* Memory will be owned by ab->C_petsc */ 1164076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,tmp,&ab->C_petsc);CHKERRQ(ierr); 1165076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AtB(product,B,ab->C_petsc,PETSC_FALSE,N,l2g/*not used*/,atb);CHKERRQ(ierr); 1166076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1167076ba34aSJunchao Zhang } 1168076ba34aSJunchao Zhang /* Split the C_global into petsc A, B format */ 1169076ba34aSJunchao Zhang ierr = MatSetMPIAIJKokkosWithGlobalCSRMatrix(C,MAT_INITIAL_MATRIX,mm->C_global,mm->Cdstart);CHKERRQ(ierr); 1170076ba34aSJunchao Zhang C->product->data = mmdata; 1171076ba34aSJunchao Zhang C->product->destroy = MatProductDataDestroy_MPIAIJKokkos; 1172076ba34aSJunchao Zhang C->ops->productnumeric = MatProductNumeric_MPIAIJKokkos; 1173076ba34aSJunchao Zhang PetscFunctionReturn(0); 1174076ba34aSJunchao Zhang } 1175076ba34aSJunchao Zhang 1176076ba34aSJunchao Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJKokkos(Mat mat) 1177076ba34aSJunchao Zhang { 1178076ba34aSJunchao Zhang PetscErrorCode ierr; 1179076ba34aSJunchao Zhang Mat_Product *product = mat->product; 1180076ba34aSJunchao Zhang PetscBool match = PETSC_FALSE; 1181076ba34aSJunchao Zhang PetscBool usecpu = PETSC_FALSE; 1182076ba34aSJunchao Zhang 1183076ba34aSJunchao Zhang PetscFunctionBegin; 1184076ba34aSJunchao Zhang MatCheckProduct(mat,1); 1185076ba34aSJunchao Zhang if (!product->A->boundtocpu && !product->B->boundtocpu) { 1186076ba34aSJunchao Zhang ierr = PetscObjectTypeCompare((PetscObject)product->B,((PetscObject)product->A)->type_name,&match);CHKERRQ(ierr); 1187076ba34aSJunchao Zhang } 1188076ba34aSJunchao Zhang if (match) { /* we can always fallback to the CPU if requested */ 1189076ba34aSJunchao Zhang switch (product->type) { 1190076ba34aSJunchao Zhang case MATPRODUCT_AB: 1191076ba34aSJunchao Zhang if (product->api_user) { 1192076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatMatMult","Mat");CHKERRQ(ierr); 1193076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matmatmult_backend_cpu","Use CPU code","MatMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1194076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1195076ba34aSJunchao Zhang } else { 1196076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatProduct_AB","Mat");CHKERRQ(ierr); 11973e662e0bSHong Zhang ierr = PetscOptionsBool("-mat_product_algorithm_backend_cpu","Use CPU code","MatMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1198076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1199076ba34aSJunchao Zhang } 1200076ba34aSJunchao Zhang break; 1201076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1202076ba34aSJunchao Zhang if (product->api_user) { 1203076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatTransposeMatMult","Mat");CHKERRQ(ierr); 1204076ba34aSJunchao Zhang ierr = PetscOptionsBool("-mattransposematmult_backend_cpu","Use CPU code","MatTransposeMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1205076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1206076ba34aSJunchao Zhang } else { 1207076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatProduct_AtB","Mat");CHKERRQ(ierr); 12083e662e0bSHong Zhang ierr = PetscOptionsBool("-mat_product_algorithm_backend_cpu","Use CPU code","MatTransposeMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1209076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1210076ba34aSJunchao Zhang } 1211076ba34aSJunchao Zhang break; 1212076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1213076ba34aSJunchao Zhang if (product->api_user) { 1214076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatPtAP","Mat");CHKERRQ(ierr); 1215076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matptap_backend_cpu","Use CPU code","MatPtAP",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1216076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1217076ba34aSJunchao Zhang } else { 1218076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatProduct_PtAP","Mat");CHKERRQ(ierr); 12193e662e0bSHong Zhang ierr = PetscOptionsBool("-mat_product_algorithm_backend_cpu","Use CPU code","MatPtAP",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1220076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1221076ba34aSJunchao Zhang } 1222076ba34aSJunchao Zhang break; 1223076ba34aSJunchao Zhang default: 1224076ba34aSJunchao Zhang break; 1225076ba34aSJunchao Zhang } 1226076ba34aSJunchao Zhang match = (PetscBool)!usecpu; 1227076ba34aSJunchao Zhang } 1228076ba34aSJunchao Zhang if (match) { 1229076ba34aSJunchao Zhang switch (product->type) { 1230076ba34aSJunchao Zhang case MATPRODUCT_AB: 1231076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1232076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1233076ba34aSJunchao Zhang mat->ops->productsymbolic = MatProductSymbolic_MPIAIJKokkos; 1234076ba34aSJunchao Zhang break; 1235076ba34aSJunchao Zhang default: 1236076ba34aSJunchao Zhang break; 1237076ba34aSJunchao Zhang } 1238076ba34aSJunchao Zhang } 1239076ba34aSJunchao Zhang /* fallback to MPIAIJ ops */ 1240076ba34aSJunchao Zhang if (!mat->ops->productsymbolic) { 1241076ba34aSJunchao Zhang ierr = MatProductSetFromOptions_MPIAIJ(mat);CHKERRQ(ierr); 1242076ba34aSJunchao Zhang } 1243076ba34aSJunchao Zhang PetscFunctionReturn(0); 1244076ba34aSJunchao Zhang } 1245076ba34aSJunchao Zhang 124642550becSJunchao Zhang /* std::upper_bound(): Given a sorted array, return index of the first element in range [first,last) whose value 124742550becSJunchao Zhang is greater than value, or last if there is no such element. 124842550becSJunchao Zhang */ 1249*9fbee547SJacob Faibussowitsch static inline PetscErrorCode PetscSortedIntUpperBound(PetscInt *array,PetscInt first,PetscInt last,PetscInt value,PetscInt *upper) 125042550becSJunchao Zhang { 125142550becSJunchao Zhang PetscInt it,step,count = last - first; 125242550becSJunchao Zhang 125342550becSJunchao Zhang PetscFunctionBegin; 125442550becSJunchao Zhang while (count > 0) { 125542550becSJunchao Zhang it = first; 125642550becSJunchao Zhang step = count / 2; 125742550becSJunchao Zhang it += step; 125842550becSJunchao Zhang if (!(value < array[it])) { 125942550becSJunchao Zhang first = ++it; 126042550becSJunchao Zhang count -= step + 1; 126142550becSJunchao Zhang } else count = step; 126242550becSJunchao Zhang } 126342550becSJunchao Zhang *upper = first; 126442550becSJunchao Zhang PetscFunctionReturn(0); 126542550becSJunchao Zhang } 126642550becSJunchao Zhang 126742550becSJunchao Zhang /* Merge two sets of sorted nonzero entries and return a CSR for the merged (sequential) matrix 126842550becSJunchao Zhang 126942550becSJunchao Zhang Input Parameters: 127042550becSJunchao Zhang 127142550becSJunchao Zhang j1,rowBegin1,rowEnd1,perm1,jmap1: describe the first set of nonzeros (Set1) 127242550becSJunchao Zhang j2,rowBegin2,rowEnd2,perm2,jmap2: describe the second set of nonzeros (Set2) 127342550becSJunchao Zhang 127442550becSJunchao Zhang mat: both sets' entries are on m rows, where m is the number of local rows of the matrix mat 127542550becSJunchao Zhang 127642550becSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 127742550becSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 127842550becSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 127942550becSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 128042550becSJunchao Zhang 128142550becSJunchao Zhang Similar for Set2. 128242550becSJunchao Zhang 128342550becSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 128442550becSJunchao Zhang 128542550becSJunchao Zhang Output Parameters: (memories are allocated by the caller) 128642550becSJunchao Zhang 128742550becSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 128842550becSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 128942550becSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 129042550becSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 129142550becSJunchao Zhang */ 129242550becSJunchao Zhang static PetscErrorCode MatMergeEntries_Internal(Mat mat,const PetscInt *j1,const PetscInt *j2,const PetscInt *rowBegin1,const PetscInt *rowEnd1, 129342550becSJunchao Zhang const PetscInt *rowBegin2,const PetscInt *rowEnd2,const MatRowMapKokkosViewHost& jmap1_h,const MatRowMapKokkosViewHost& jmap2_h, 129442550becSJunchao Zhang MatRowMapKokkosViewHost& imap1_h,MatRowMapKokkosViewHost& imap2_h,PetscInt *i,PetscInt *j) 129542550becSJunchao Zhang { 129642550becSJunchao Zhang PetscErrorCode ierr; 129742550becSJunchao Zhang PetscInt r,m,t,t1,t2,b1,e1,b2,e2; 129842550becSJunchao Zhang PetscInt *jmap1 = jmap1_h.data(),*jmap2 = jmap2_h.data(),*imap1 = imap1_h.data(),*imap2 = imap2_h.data(); 129942550becSJunchao Zhang 130042550becSJunchao Zhang PetscFunctionBegin; 130142550becSJunchao Zhang ierr = MatGetLocalSize(mat,&m,NULL);CHKERRQ(ierr); 130242550becSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 130342550becSJunchao Zhang i[0] = 0; 130442550becSJunchao Zhang for (r=0; r<m; r++) { /* Do row by row merging */ 130542550becSJunchao Zhang b1 = rowBegin1[r]; 130642550becSJunchao Zhang e1 = rowEnd1[r]; 130742550becSJunchao Zhang b2 = rowBegin2[r]; 130842550becSJunchao Zhang e2 = rowEnd2[r]; 130942550becSJunchao Zhang while (b1 < e1 && b2 < e2) { 131042550becSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 131142550becSJunchao Zhang j[t] = j1[b1]; 131242550becSJunchao Zhang imap1[t1] = t; 131342550becSJunchao Zhang imap2[t2] = t; 131442550becSJunchao Zhang b1 += jmap1[t1+1] - jmap1[t1]; /* Jump to next unique local nonzero */ 131542550becSJunchao Zhang b2 += jmap2[t2+1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 131642550becSJunchao Zhang t1++; t2++; t++; 131742550becSJunchao Zhang } else if (j1[b1] < j2[b2]) { 131842550becSJunchao Zhang j[t] = j1[b1]; 131942550becSJunchao Zhang imap1[t1] = t; 132042550becSJunchao Zhang b1 += jmap1[t1+1] - jmap1[t1]; 132142550becSJunchao Zhang t1++; t++; 132242550becSJunchao Zhang } else { 132342550becSJunchao Zhang j[t] = j2[b2]; 132442550becSJunchao Zhang imap2[t2] = t; 132542550becSJunchao Zhang b2 += jmap2[t2+1] - jmap2[t2]; 132642550becSJunchao Zhang t2++; t++; 132742550becSJunchao Zhang } 132842550becSJunchao Zhang } 132942550becSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 133042550becSJunchao Zhang while (b1 < e1) { 133142550becSJunchao Zhang j[t] = j1[b1]; 133242550becSJunchao Zhang imap1[t1] = t; 133342550becSJunchao Zhang b1 += jmap1[t1+1] - jmap1[t1]; 133442550becSJunchao Zhang t1++; t++; 133542550becSJunchao Zhang } 133642550becSJunchao Zhang while (b2 < e2) { 133742550becSJunchao Zhang j[t] = j2[b2]; 133842550becSJunchao Zhang imap2[t2] = t; 133942550becSJunchao Zhang b2 += jmap2[t2+1] - jmap2[t2]; 134042550becSJunchao Zhang t2++; t++; 134142550becSJunchao Zhang } 134242550becSJunchao Zhang i[r+1] = t; 134342550becSJunchao Zhang } 134442550becSJunchao Zhang PetscFunctionReturn(0); 134542550becSJunchao Zhang } 134642550becSJunchao Zhang 134742550becSJunchao Zhang /* Split a set/group of local entries into two subsets: those in the diagonal block and those in the off-diagonal block 134842550becSJunchao Zhang 134942550becSJunchao Zhang Input Parameters: 135042550becSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's assume its number of local rows is m. 135142550becSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 135242550becSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 135342550becSJunchao Zhang 135442550becSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 135542550becSJunchao Zhang i[] might contain negative indices at the beginning, which says the corresponding entries should be ignored in the splitting. 135642550becSJunchao Zhang 135742550becSJunchao Zhang Output Parameters: 135842550becSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 135942550becSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 136042550becSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries in row r of the diagonal block, 136142550becSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries in row r of the off-diagonal block. 136242550becSJunchao Zhang 136342550becSJunchao Zhang Aperm_h,Ajmap_h: They are Kokkos views on host. This routine will resize and fill them with proper values. Let's say Aperm = Aperm_h.data(), 136442550becSJunchao Zhang and Ajmap = Ajmap_h.data(). Aperm[] stores values from perm[] for entries in the diagonal block. Hence length of Aperm[] is the number 136542550becSJunchao Zhang of entries in the diagonal block, though those entries might have repeats (i.e., same 'i,j' pair). 136642550becSJunchao Zhang Ajmap[] stores the number of repeats of each unique nonzero in the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] is the number of 136742550becSJunchao Zhang repeats for the t-th unique nonzero in the diagonal block. Ajmap[0] is always 0. 136842550becSJunchao Zhang Length of Aperm_h is the number of nonzeros in the diagonal block. 136942550becSJunchao Zhang Length of Ajmap_h is the number of unique nonzeros in the diagonal block + 1. 137042550becSJunchao Zhang 137142550becSJunchao Zhang Bperm_h and Bjmap_h are similar to Aperm_h and Ajmap_h, respectively, but for the off-diagonal block. 137242550becSJunchao Zhang */ 137342550becSJunchao Zhang 137442550becSJunchao Zhang static PetscErrorCode MatSplitEntries_Internal(Mat mat,PetscInt n,const PetscInt i[], 137542550becSJunchao Zhang PetscInt j[],PetscInt perm[],PetscInt rowBegin[],PetscInt rowMid[],PetscInt rowEnd[], 137642550becSJunchao Zhang MatRowMapKokkosViewHost& Aperm_h,MatRowMapKokkosViewHost& Ajmap_h,MatRowMapKokkosViewHost& Bperm_h,MatRowMapKokkosViewHost& Bjmap_h) 137742550becSJunchao Zhang { 137842550becSJunchao Zhang PetscErrorCode ierr; 137942550becSJunchao Zhang PetscInt cstart,cend,rstart,rend,mid; 138042550becSJunchao Zhang PetscInt Atot=0,Btot=0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 138142550becSJunchao Zhang PetscInt Annz=0,Bnnz=0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 138242550becSJunchao Zhang PetscInt k,m,p,q,r,s,row,col; 138342550becSJunchao Zhang PetscInt *Aperm,*Bperm,*Ajmap,*Bjmap; 138442550becSJunchao Zhang 138542550becSJunchao Zhang PetscFunctionBegin; 138642550becSJunchao Zhang ierr = PetscLayoutGetRange(mat->rmap,&rstart,&rend);CHKERRQ(ierr); 138742550becSJunchao Zhang ierr = PetscLayoutGetRange(mat->cmap,&cstart,&cend);CHKERRQ(ierr); 138842550becSJunchao Zhang m = rend - rstart; 138942550becSJunchao Zhang 139042550becSJunchao Zhang for (k=0; k<n; k++) {if (i[k]>=0) break;} /* Skip negative rows */ 139142550becSJunchao Zhang 139242550becSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 139342550becSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 139442550becSJunchao Zhang */ 139542550becSJunchao Zhang while (k<n) { 139642550becSJunchao Zhang row = i[k]; 139742550becSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 139842550becSJunchao Zhang for (s=k; s<n; s++) if (i[s] != row) break; 139942550becSJunchao Zhang for (p=k; p<s; p++) { 140042550becSJunchao Zhang if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT; /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */ 140142550becSJunchao Zhang #if defined(PETSC_USE_DEBUG) 14029ace16cdSJacob Faibussowitsch else PetscAssertFalse(j[p] < 0 || j[p] > mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index %" PetscInt_FMT " is out of range",j[p]); 140342550becSJunchao Zhang #endif 140442550becSJunchao Zhang } 140542550becSJunchao Zhang ierr = PetscSortIntWithArray(s-k,j+k,perm+k);CHKERRQ(ierr); 140642550becSJunchao Zhang ierr = PetscSortedIntUpperBound(j,k,s,-1,&mid);CHKERRQ(ierr); /* Seperate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 140742550becSJunchao Zhang rowBegin[row-rstart] = k; 140842550becSJunchao Zhang rowMid[row-rstart] = mid; 140942550becSJunchao Zhang rowEnd[row-rstart] = s; 141042550becSJunchao Zhang 141142550becSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 141242550becSJunchao Zhang Atot += mid - k; 141342550becSJunchao Zhang Btot += s - mid; 141442550becSJunchao Zhang 141542550becSJunchao Zhang /* Count unique nonzeros of this diag/offdiag row */ 141642550becSJunchao Zhang for (p=k; p<mid;) { 141742550becSJunchao Zhang col = j[p]; 141842550becSJunchao Zhang do {j[p] += PETSC_MAX_INT; p++;} while (p<mid && j[p] == col); /* Revert the modified diagonal indices */ 141942550becSJunchao Zhang Annz++; 142042550becSJunchao Zhang } 142142550becSJunchao Zhang 142242550becSJunchao Zhang for (p=mid; p<s;) { 142342550becSJunchao Zhang col = j[p]; 142442550becSJunchao Zhang do {p++;} while (p<s && j[p] == col); 142542550becSJunchao Zhang Bnnz++; 142642550becSJunchao Zhang } 142742550becSJunchao Zhang k = s; 142842550becSJunchao Zhang } 142942550becSJunchao Zhang 143042550becSJunchao Zhang /* Resize views according to Atot, Btot, Annz, Bnnz */ 143142550becSJunchao Zhang Kokkos::resize(Aperm_h,Atot); 143242550becSJunchao Zhang Kokkos::resize(Ajmap_h,Annz+1); 143342550becSJunchao Zhang Kokkos::resize(Bperm_h,Btot); 143442550becSJunchao Zhang Kokkos::resize(Bjmap_h,Bnnz+1); 143542550becSJunchao Zhang Aperm = Aperm_h.data(); 143642550becSJunchao Zhang Bperm = Bperm_h.data(); 143742550becSJunchao Zhang Ajmap = Ajmap_h.data(); 143842550becSJunchao Zhang Bjmap = Bjmap_h.data(); 143942550becSJunchao Zhang Ajmap[0] = 0; 144042550becSJunchao Zhang Bjmap[0] = 0; 144142550becSJunchao Zhang 144242550becSJunchao Zhang /* Re-scan indices and copy diag/offdiag permuation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 144342550becSJunchao Zhang Atot = Btot = Annz = Bnnz = 0; 144442550becSJunchao Zhang for (r=0; r<m; r++) { 144542550becSJunchao Zhang k = rowBegin[r]; 144642550becSJunchao Zhang mid = rowMid[r]; 144742550becSJunchao Zhang s = rowEnd[r]; 144842550becSJunchao Zhang ierr = PetscArraycpy(Aperm+Atot,perm+k, mid-k);CHKERRQ(ierr); 144942550becSJunchao Zhang ierr = PetscArraycpy(Bperm+Btot,perm+mid,s-mid);CHKERRQ(ierr); 145042550becSJunchao Zhang Atot += mid - k; 145142550becSJunchao Zhang Btot += s - mid; 145242550becSJunchao Zhang 145342550becSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 145442550becSJunchao Zhang for (p=k; p<mid;) { 145542550becSJunchao Zhang col = j[p]; 145642550becSJunchao Zhang q = p; 145742550becSJunchao Zhang do {p++;} while (p<mid && j[p] == col); 145842550becSJunchao Zhang Ajmap[Annz+1] = Ajmap[Annz] + (p - q); 145942550becSJunchao Zhang Annz++; 146042550becSJunchao Zhang } 146142550becSJunchao Zhang 146242550becSJunchao Zhang for (p=mid; p<s;) { 146342550becSJunchao Zhang col = j[p]; 146442550becSJunchao Zhang q = p; 146542550becSJunchao Zhang do {p++;} while (p<s && j[p] == col); 146642550becSJunchao Zhang Bjmap[Bnnz+1] = Bjmap[Bnnz] + (p - q); 146742550becSJunchao Zhang Bnnz++; 146842550becSJunchao Zhang } 146942550becSJunchao Zhang } 147042550becSJunchao Zhang PetscFunctionReturn(0); 147142550becSJunchao Zhang } 147242550becSJunchao Zhang 147382a78a4eSJed Brown static PetscErrorCode MatSetPreallocationCOO_MPIAIJKokkos(Mat mat, PetscCount coo_n, const PetscInt coo_i[], const PetscInt coo_j[]) 147442550becSJunchao Zhang { 147542550becSJunchao Zhang PetscErrorCode ierr; 147642550becSJunchao Zhang MPI_Comm comm; 147742550becSJunchao Zhang PetscMPIInt rank,size; 147842550becSJunchao Zhang PetscInt m,n,M,N,k,p,q,rstart,rend,cstart,cend,rem; 147942550becSJunchao Zhang 148042550becSJunchao Zhang PetscFunctionBegin; 148142550becSJunchao Zhang ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 148242550becSJunchao Zhang ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 148342550becSJunchao Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 148442550becSJunchao Zhang 148542550becSJunchao Zhang ierr = PetscLayoutGetRange(mat->rmap,&rstart,&rend);CHKERRQ(ierr); 148642550becSJunchao Zhang ierr = PetscLayoutGetRange(mat->cmap,&cstart,&cend);CHKERRQ(ierr); 148742550becSJunchao Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 148842550becSJunchao Zhang ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr); 148942550becSJunchao Zhang 149042550becSJunchao Zhang /* ---------------------------------------------------------------------------*/ 149142550becSJunchao Zhang /* Sort (i,j) by row along with a permuation array, so that the to-be-ignored */ 149242550becSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 149342550becSJunchao Zhang /* ---------------------------------------------------------------------------*/ 149482a78a4eSJed Brown PetscCount n1 = coo_n; 149582a78a4eSJed Brown PetscInt *i1,*j1,*perm1; /* Copies of input COOs along with a permutation array */ 149642550becSJunchao Zhang ierr = PetscMalloc3(n1,&i1,n1,&j1,n1,&perm1);CHKERRQ(ierr); 149742550becSJunchao Zhang ierr = PetscArraycpy(i1,coo_i,n1);CHKERRQ(ierr); /* Make a copy since we'll modify it */ 149842550becSJunchao Zhang ierr = PetscArraycpy(j1,coo_j,n1);CHKERRQ(ierr); 149942550becSJunchao Zhang for (k=0; k<n1; k++) perm1[k] = k; 150042550becSJunchao Zhang 150142550becSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 150242550becSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 150342550becSJunchao Zhang will have positive row indices. 150442550becSJunchao Zhang */ 150542550becSJunchao Zhang for (k=0; k<n1; k++) { 150642550becSJunchao Zhang if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT; /* e.g., -2^31, minimal to move them ahead */ 150742550becSJunchao Zhang else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */ 150842550becSJunchao Zhang } 150942550becSJunchao Zhang 151042550becSJunchao Zhang /* Sort by row; after that, [0,k) have ignored entires, [k,rem) have local rows and [rem,n1) have remote rows */ 151142550becSJunchao Zhang ierr = PetscSortIntWithArrayPair(n1,i1,j1,perm1);CHKERRQ(ierr); 151242550becSJunchao Zhang for (k=0; k<n1; k++) {if (i1[k] > PETSC_MIN_INT) break;} /* Advance k to the first entry we need to take care of */ 151342550becSJunchao Zhang ierr = PetscSortedIntUpperBound(i1,k,n1,rend-1-PETSC_MAX_INT,&rem);CHKERRQ(ierr); /* rem is upper bound of the last local row */ 151442550becSJunchao Zhang for (; k<rem; k++) i1[k] += PETSC_MAX_INT; /* Revert row indices of local rows*/ 151542550becSJunchao Zhang 151642550becSJunchao Zhang /* ---------------------------------------------------------------------------*/ 151742550becSJunchao Zhang /* Split local rows into diag/offdiag portions */ 151842550becSJunchao Zhang /* ---------------------------------------------------------------------------*/ 151942550becSJunchao Zhang PetscInt *rowBegin1,*rowMid1,*rowEnd1; 152042550becSJunchao Zhang MatRowMapKokkosViewHost Ajmap1_h,Aperm1_h,Bjmap1_h,Bperm1_h,Cperm1_h("Cperm1_h",n1-rem); 152142550becSJunchao Zhang 152242550becSJunchao Zhang ierr = PetscCalloc3(m,&rowBegin1,m,&rowMid1,m,&rowEnd1);CHKERRQ(ierr); 152342550becSJunchao Zhang ierr = MatSplitEntries_Internal(mat,rem,i1,j1,perm1,rowBegin1,rowMid1,rowEnd1,Aperm1_h,Ajmap1_h,Bperm1_h,Bjmap1_h);CHKERRQ(ierr); 152442550becSJunchao Zhang 152542550becSJunchao Zhang /* ---------------------------------------------------------------------------*/ 152642550becSJunchao Zhang /* Send remote rows to their owner */ 152742550becSJunchao Zhang /* ---------------------------------------------------------------------------*/ 152842550becSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 152942550becSJunchao Zhang PetscInt nsend = 0; 153042550becSJunchao Zhang PetscMPIInt *sendto; /* Of length nsend, storing remote ranks */ 153142550becSJunchao Zhang PetscInt *nentries; /* Of length nsend, storing number of entries to be sent to each remote rank */ 153242550becSJunchao Zhang const PetscInt *ranges; 153342550becSJunchao Zhang PetscInt maxNsend = size >= 128? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 153442550becSJunchao Zhang 153542550becSJunchao Zhang ierr = PetscLayoutGetRanges(mat->rmap,&ranges);CHKERRQ(ierr); 153642550becSJunchao Zhang ierr = PetscMalloc2(maxNsend,&sendto,maxNsend,&nentries);CHKERRQ(ierr); 153742550becSJunchao Zhang for (k=rem; k<n1;) { 153842550becSJunchao Zhang PetscMPIInt owner; 153942550becSJunchao Zhang PetscInt firstRow,lastRow; 154042550becSJunchao Zhang /* Locate a row range */ 154142550becSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 154242550becSJunchao Zhang ierr = PetscLayoutFindOwner(mat->rmap,firstRow,&owner);CHKERRQ(ierr); 154342550becSJunchao Zhang lastRow = ranges[owner+1]-1; /* last row of this owner */ 154442550becSJunchao Zhang 154542550becSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 154642550becSJunchao Zhang ierr = PetscSortedIntUpperBound(i1,k,n1,lastRow,&p);CHKERRQ(ierr); 154742550becSJunchao Zhang 154842550becSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 154942550becSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 155042550becSJunchao Zhang PetscMPIInt *sendto2; 155142550becSJunchao Zhang PetscInt *nentries2; 155242550becSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size/2) ? maxNsend*2 : size; 155342550becSJunchao Zhang ierr = PetscMalloc2(maxNsend2,&sendto2,maxNsend2,&nentries2);CHKERRQ(ierr); 155442550becSJunchao Zhang ierr = PetscArraycpy(sendto2,sendto,maxNsend);CHKERRQ(ierr); 155542550becSJunchao Zhang ierr = PetscArraycpy(nentries2,nentries2,maxNsend+1);CHKERRQ(ierr); 155642550becSJunchao Zhang ierr = PetscFree2(sendto,nentries2);CHKERRQ(ierr); 155742550becSJunchao Zhang sendto = sendto2; 155842550becSJunchao Zhang nentries = nentries2; 155942550becSJunchao Zhang maxNsend = maxNsend2; 156042550becSJunchao Zhang } 156142550becSJunchao Zhang sendto[nsend] = owner; 156242550becSJunchao Zhang nentries[nsend] = p - k; 156342550becSJunchao Zhang nsend++; 156442550becSJunchao Zhang k = p; 156542550becSJunchao Zhang } 156642550becSJunchao Zhang 156742550becSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 156842550becSJunchao Zhang PetscSF sf1; 156942550becSJunchao Zhang PetscInt nroots = 1,nroots2 = 0; 157042550becSJunchao Zhang PetscInt nleaves = nsend,nleaves2 = 0; 157142550becSJunchao Zhang PetscInt *offsets; 157242550becSJunchao Zhang PetscSFNode *iremote; 157342550becSJunchao Zhang 157442550becSJunchao Zhang ierr = PetscSFCreate(comm,&sf1);CHKERRQ(ierr); 157542550becSJunchao Zhang ierr = PetscMalloc1(nsend,&iremote);CHKERRQ(ierr); 157642550becSJunchao Zhang ierr = PetscMalloc1(nsend,&offsets);CHKERRQ(ierr); 157742550becSJunchao Zhang for (k=0; k<nsend; k++) { 157842550becSJunchao Zhang iremote[k].rank = sendto[k]; 157942550becSJunchao Zhang iremote[k].index = 0; 158042550becSJunchao Zhang nleaves2 += nentries[k]; 158142550becSJunchao Zhang } 158242550becSJunchao Zhang ierr = PetscSFSetGraph(sf1,nroots,nleaves,NULL,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 158342550becSJunchao Zhang ierr = PetscSFFetchAndOpWithMemTypeBegin(sf1,MPIU_INT,PETSC_MEMTYPE_HOST,&nroots2/*rootdata*/,PETSC_MEMTYPE_HOST,nentries/*leafdata*/,PETSC_MEMTYPE_HOST,offsets/*leafupdate*/,MPI_SUM);CHKERRQ(ierr); 158442550becSJunchao Zhang ierr = PetscSFFetchAndOpEnd(sf1,MPIU_INT,&nroots2,nentries,offsets,MPI_SUM);CHKERRQ(ierr); 158542550becSJunchao Zhang ierr = PetscSFDestroy(&sf1);CHKERRQ(ierr); 158642550becSJunchao Zhang 158742550becSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 158842550becSJunchao Zhang PetscSF sf2; 158942550becSJunchao Zhang nroots = nroots2; 159042550becSJunchao Zhang nleaves = nleaves2; 159142550becSJunchao Zhang ierr = PetscSFCreate(comm,&sf2);CHKERRQ(ierr); 159242550becSJunchao Zhang ierr = PetscSFSetFromOptions(sf2);CHKERRQ(ierr); 159342550becSJunchao Zhang ierr = PetscMalloc1(nleaves,&iremote);CHKERRQ(ierr); 159442550becSJunchao Zhang p = 0; 159542550becSJunchao Zhang for (k=0; k<nsend; k++) { 159642550becSJunchao Zhang for (q=0; q<nentries[k]; q++,p++) { 159742550becSJunchao Zhang iremote[p].rank = sendto[k]; 159842550becSJunchao Zhang iremote[p].index = offsets[k] + q; 159942550becSJunchao Zhang } 160042550becSJunchao Zhang } 160142550becSJunchao Zhang ierr = PetscSFSetGraph(sf2,nroots,nleaves,NULL,PETSC_USE_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 160242550becSJunchao Zhang 160342550becSJunchao Zhang /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permuation which will be used to fill leafdata */ 160442550becSJunchao Zhang ierr = PetscArraycpy(Cperm1_h.data(),perm1+rem,n1-rem);CHKERRQ(ierr); 160542550becSJunchao Zhang 160642550becSJunchao Zhang /* Send the remote COOs to their owner */ 160742550becSJunchao Zhang PetscInt n2 = nroots,*i2,*j2,*perm2; /* Buffers for received COOs from other ranks, along with a permutation array */ 160842550becSJunchao Zhang ierr = PetscMalloc3(n2,&i2,n2,&j2,n2,&perm2);CHKERRQ(ierr); 160942550becSJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(sf2,MPIU_INT,PETSC_MEMTYPE_HOST,i1+rem,PETSC_MEMTYPE_HOST,i2,MPI_REPLACE);CHKERRQ(ierr); 161042550becSJunchao Zhang ierr = PetscSFReduceEnd(sf2,MPIU_INT,i1+rem,i2,MPI_REPLACE);CHKERRQ(ierr); 161142550becSJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(sf2,MPIU_INT,PETSC_MEMTYPE_HOST,j1+rem,PETSC_MEMTYPE_HOST,j2,MPI_REPLACE);CHKERRQ(ierr); 161242550becSJunchao Zhang ierr = PetscSFReduceEnd(sf2,MPIU_INT,j1+rem,j2,MPI_REPLACE);CHKERRQ(ierr); 161342550becSJunchao Zhang 161442550becSJunchao Zhang ierr = PetscFree(offsets);CHKERRQ(ierr); 161542550becSJunchao Zhang ierr = PetscFree2(sendto,nentries);CHKERRQ(ierr); 161642550becSJunchao Zhang 161742550becSJunchao Zhang /* ---------------------------------------------------------------*/ 161842550becSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 161942550becSJunchao Zhang /* ---------------------------------------------------------------*/ 162042550becSJunchao Zhang for (k=0; k<n2; k++) perm2[k] = k; 162142550becSJunchao Zhang ierr = PetscSortIntWithArrayPair(n2,i2,j2,perm2);CHKERRQ(ierr); 162242550becSJunchao Zhang 162342550becSJunchao Zhang /* ---------------------------------------------------------------*/ 162442550becSJunchao Zhang /* Split received COOs into diag/offdiag portions */ 162542550becSJunchao Zhang /* ---------------------------------------------------------------*/ 162642550becSJunchao Zhang PetscInt *rowBegin2,*rowMid2,*rowEnd2; 162742550becSJunchao Zhang MatRowMapKokkosViewHost Ajmap2_h,Aperm2_h,Bjmap2_h,Bperm2_h; 162842550becSJunchao Zhang 162942550becSJunchao Zhang ierr = PetscCalloc3(m,&rowBegin2,m,&rowMid2,m,&rowEnd2);CHKERRQ(ierr); 163042550becSJunchao Zhang ierr = MatSplitEntries_Internal(mat,n2,i2,j2,perm2,rowBegin2,rowMid2,rowEnd2,Aperm2_h,Ajmap2_h,Bperm2_h,Bjmap2_h);CHKERRQ(ierr); 163142550becSJunchao Zhang 163242550becSJunchao Zhang /* --------------------------------------------------------------------------*/ 163342550becSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 163442550becSJunchao Zhang /* --------------------------------------------------------------------------*/ 163542550becSJunchao Zhang PetscInt Annz1,Annz2,Bnnz1,Bnnz2; 163642550becSJunchao Zhang PetscInt *Ai,*Aj,*Bi,*Bj; 163742550becSJunchao Zhang 163842550becSJunchao Zhang Annz1 = Ajmap1_h.extent(0)-1; /* Number of unique local nonzeros in the diagonal block */ 163942550becSJunchao Zhang Annz2 = Ajmap2_h.extent(0)-1; /* Number of unique received nonzeros in the diagonal block */ 164042550becSJunchao Zhang Bnnz1 = Bjmap1_h.extent(0)-1; /* Similar, but for the off-diagonal block */ 164142550becSJunchao Zhang Bnnz2 = Bjmap2_h.extent(0)-1; 164242550becSJunchao Zhang ierr = PetscMalloc1(m+1,&Ai);CHKERRQ(ierr); 164342550becSJunchao Zhang ierr = PetscMalloc1(m+1,&Bi);CHKERRQ(ierr); 164442550becSJunchao Zhang ierr = PetscMalloc1(Annz1+Annz2,&Aj);CHKERRQ(ierr); /* Since local and remote entries might have dups, we might allocate excess memory */ 164542550becSJunchao Zhang ierr = PetscMalloc1(Bnnz1+Bnnz2,&Bj);CHKERRQ(ierr); 164642550becSJunchao Zhang 164742550becSJunchao Zhang MatRowMapKokkosViewHost Aimap1_h("Aimpa1",Annz1),Aimap2_h("Aimpa2",Annz2),Bimap1_h("Bimap1",Bnnz1),Bimap2_h("Bimap2",Bnnz2); 164842550becSJunchao Zhang ierr = MatMergeEntries_Internal(mat,j1,j2,rowBegin1,rowMid1,rowBegin2,rowMid2,Ajmap1_h,Ajmap2_h,Aimap1_h,Aimap2_h,Ai,Aj);CHKERRQ(ierr); 164942550becSJunchao Zhang ierr = MatMergeEntries_Internal(mat,j1,j2,rowMid1, rowEnd1,rowMid2, rowEnd2,Bjmap1_h,Bjmap2_h,Bimap1_h,Bimap2_h,Bi,Bj);CHKERRQ(ierr); 165042550becSJunchao Zhang ierr = PetscFree3(rowBegin1,rowMid1,rowEnd1);CHKERRQ(ierr); 165142550becSJunchao Zhang ierr = PetscFree3(rowBegin2,rowMid2,rowEnd2);CHKERRQ(ierr); 165242550becSJunchao Zhang ierr = PetscFree3(i1,j1,perm1);CHKERRQ(ierr); 165342550becSJunchao Zhang ierr = PetscFree3(i2,j2,perm2);CHKERRQ(ierr); 165442550becSJunchao Zhang 165542550becSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 165642550becSJunchao Zhang PetscInt Annz = Ai[m]; 165742550becSJunchao Zhang PetscInt Bnnz = Bi[m]; 165842550becSJunchao Zhang if (Annz < Annz1 + Annz2) { 165942550becSJunchao Zhang PetscInt *Aj_new; 166042550becSJunchao Zhang ierr = PetscMalloc1(Annz,&Aj_new);CHKERRQ(ierr); 166142550becSJunchao Zhang ierr = PetscArraycpy(Aj_new,Aj,Annz);CHKERRQ(ierr); 166242550becSJunchao Zhang ierr = PetscFree(Aj);CHKERRQ(ierr); 166342550becSJunchao Zhang Aj = Aj_new; 166442550becSJunchao Zhang } 166542550becSJunchao Zhang 166642550becSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 166742550becSJunchao Zhang PetscInt *Bj_new; 166842550becSJunchao Zhang ierr = PetscMalloc1(Bnnz,&Bj_new);CHKERRQ(ierr); 166942550becSJunchao Zhang ierr = PetscArraycpy(Bj_new,Bj,Bnnz);CHKERRQ(ierr); 167042550becSJunchao Zhang ierr = PetscFree(Bj);CHKERRQ(ierr); 167142550becSJunchao Zhang Bj = Bj_new; 167242550becSJunchao Zhang } 167342550becSJunchao Zhang 167442550becSJunchao Zhang /* --------------------------------------------------------------------------------*/ 167542550becSJunchao Zhang /* Create a MPIAIJKOKKOS newmat with CSRs of A and B, then replace mat with newmat */ 167642550becSJunchao Zhang /* --------------------------------------------------------------------------------*/ 167742550becSJunchao Zhang Mat newmat; 167842550becSJunchao Zhang PetscScalar *Aa,*Ba; 167942550becSJunchao Zhang Mat_MPIAIJ *mpiaij; 168042550becSJunchao Zhang Mat_SeqAIJ *a,*b; 168142550becSJunchao Zhang 168242550becSJunchao Zhang ierr = PetscMalloc1(Annz,&Aa);CHKERRQ(ierr); 168342550becSJunchao Zhang ierr = PetscMalloc1(Bnnz,&Ba);CHKERRQ(ierr); 168442550becSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 168542550becSJunchao Zhang if (cstart) {for (k=0; k<Annz; k++) Aj[k] -= cstart;} 168642550becSJunchao Zhang ierr = MatCreateMPIAIJWithSplitArrays(comm,m,n,M,N,Ai,Aj,Aa,Bi,Bj,Ba,&newmat);CHKERRQ(ierr); 168742550becSJunchao Zhang mpiaij = (Mat_MPIAIJ*)newmat->data; 168842550becSJunchao Zhang a = (Mat_SeqAIJ*)mpiaij->A->data; 168942550becSJunchao Zhang b = (Mat_SeqAIJ*)mpiaij->B->data; 169042550becSJunchao Zhang a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */ 169142550becSJunchao Zhang a->free_a = b->free_a = PETSC_TRUE; 169242550becSJunchao Zhang a->free_ij = b->free_ij = PETSC_TRUE; 169342550becSJunchao Zhang ierr = MatConvert(newmat,MATMPIAIJKOKKOS,MAT_INPLACE_MATRIX,&newmat);CHKERRQ(ierr); 169442550becSJunchao Zhang ierr = MatHeaderMerge(mat,&newmat);CHKERRQ(ierr); 169542550becSJunchao Zhang ierr = MatZeroEntries(mat);CHKERRQ(ierr); /* Zero matrix on device */ 169642550becSJunchao Zhang mpiaij = (Mat_MPIAIJ*)mat->data; 169742550becSJunchao Zhang mpiaij->spptr = new Mat_MPIAIJKokkos(n1,sf2,nroots,nleaves,Annz1,Annz2,Bnnz1,Bnnz2, 169842550becSJunchao Zhang Aimap1_h,Aimap2_h,Bimap1_h,Bimap2_h, 169942550becSJunchao Zhang Ajmap1_h,Ajmap2_h,Bjmap1_h,Bjmap2_h, 170042550becSJunchao Zhang Aperm1_h,Aperm2_h,Bperm1_h,Bperm2_h,Cperm1_h); 170142550becSJunchao Zhang ierr = PetscSFDestroy(&sf2);CHKERRQ(ierr); /* ctor of Mat_MPIAIJKokkos already took a reference of sf3 */ 170242550becSJunchao Zhang PetscFunctionReturn(0); 170342550becSJunchao Zhang } 170442550becSJunchao Zhang 170542550becSJunchao Zhang static PetscErrorCode MatSetValuesCOO_MPIAIJKokkos(Mat mat,const PetscScalar v[],InsertMode imode) 170642550becSJunchao Zhang { 170742550becSJunchao Zhang PetscErrorCode ierr; 170842550becSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 170942550becSJunchao Zhang Mat_MPIAIJKokkos *mpikok = static_cast<Mat_MPIAIJKokkos*>(mpiaij->spptr); 171042550becSJunchao Zhang Mat A = mpiaij->A,B = mpiaij->B; 171142550becSJunchao Zhang PetscInt Annz1 = mpikok->Annz1,Annz2 = mpikok->Annz2,Bnnz1 = mpikok->Bnnz1,Bnnz2 = mpikok->Bnnz2; 171242550becSJunchao Zhang MatScalarKokkosView Aa,Ba; 171342550becSJunchao Zhang ConstMatScalarKokkosView v1; 171442550becSJunchao Zhang MatScalarKokkosView& vsend = mpikok->sendbuf_d; 171542550becSJunchao Zhang const MatScalarKokkosView& v2 = mpikok->recvbuf_d; 171642550becSJunchao Zhang const MatRowMapKokkosView& Ajmap1 = mpikok->Ajmap1_d,Ajmap2 = mpikok->Ajmap2_d,Aimap1 = mpikok->Aimap1_d,Aimap2 = mpikok->Aimap2_d; 171742550becSJunchao Zhang const MatRowMapKokkosView& Bjmap1 = mpikok->Bjmap1_d,Bjmap2 = mpikok->Bjmap2_d,Bimap1 = mpikok->Bimap1_d,Bimap2 = mpikok->Bimap2_d; 171842550becSJunchao Zhang const MatRowMapKokkosView& Aperm1 = mpikok->Aperm1_d,Aperm2 = mpikok->Aperm2_d,Bperm1 = mpikok->Bperm1_d,Bperm2 = mpikok->Bperm2_d; 171942550becSJunchao Zhang const MatRowMapKokkosView& Cperm1 = mpikok->Cperm1_d; 172042550becSJunchao Zhang PetscMemType memtype; 172142550becSJunchao Zhang 172242550becSJunchao Zhang PetscFunctionBegin; 172342550becSJunchao Zhang if (!v) { /* NULL v means an all zero array */ 172442550becSJunchao Zhang ierr = MatZeroEntries(mat);CHKERRQ(ierr); 172542550becSJunchao Zhang PetscFunctionReturn(0); 172642550becSJunchao Zhang } 172742550becSJunchao Zhang 172842550becSJunchao Zhang ierr = PetscGetMemType(v,&memtype);CHKERRQ(ierr); 172942550becSJunchao Zhang if (PetscMemTypeHost(memtype)) { /* If user gave v[] in host, we need to copy it to device if any */ 173042550becSJunchao Zhang v1 = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),ConstMatScalarKokkosViewHost(v,mpikok->coo_n)); 173142550becSJunchao Zhang } else { 173242550becSJunchao Zhang v1 = ConstMatScalarKokkosView(v,mpikok->coo_n); /* Directly use v[]'s memory */ 173342550becSJunchao Zhang } 173442550becSJunchao Zhang 173542550becSJunchao Zhang ierr = MatSeqAIJGetKokkosView(A,&Aa);CHKERRQ(ierr); /* Might read and write matrix values */ 173642550becSJunchao Zhang ierr = MatSeqAIJGetKokkosView(B,&Ba);CHKERRQ(ierr); 173742550becSJunchao Zhang if (imode == INSERT_VALUES) { 173842550becSJunchao Zhang Kokkos::deep_copy(Aa,0.0); /* Zero matrix values since INSERT_VALUES still requires summing replicated values in v[] */ 173942550becSJunchao Zhang Kokkos::deep_copy(Ba,0.0); 174042550becSJunchao Zhang } 174142550becSJunchao Zhang 174242550becSJunchao Zhang /* Pack entries to be sent to remote */ 174342550becSJunchao Zhang Kokkos::parallel_for(vsend.extent(0),KOKKOS_LAMBDA(const PetscInt i) {vsend(i) = v1(Cperm1(i));}); 174442550becSJunchao Zhang 174542550becSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 174642550becSJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(mpikok->coo_sf,MPIU_SCALAR,PETSC_MEMTYPE_KOKKOS,vsend.data(),PETSC_MEMTYPE_KOKKOS,v2.data(),MPI_REPLACE);CHKERRQ(ierr); 174742550becSJunchao Zhang /* Add local entries to A and B */ 174842550becSJunchao Zhang Kokkos::parallel_for(Annz1,KOKKOS_LAMBDA(const PetscInt i) {for (PetscInt k=Ajmap1(i); k<Ajmap1(i+1); k++) Aa(Aimap1(i)) += v1(Aperm1(k));}); 174942550becSJunchao Zhang Kokkos::parallel_for(Bnnz1,KOKKOS_LAMBDA(const PetscInt i) {for (PetscInt k=Bjmap1(i); k<Bjmap1(i+1); k++) Ba(Bimap1(i)) += v1(Bperm1(k));}); 175042550becSJunchao Zhang ierr = PetscSFReduceEnd(mpikok->coo_sf,MPIU_SCALAR,vsend.data(),v2.data(),MPI_REPLACE);CHKERRQ(ierr); 175142550becSJunchao Zhang 175242550becSJunchao Zhang /* Add received remote entries to A and B */ 175342550becSJunchao Zhang Kokkos::parallel_for(Annz2,KOKKOS_LAMBDA(const PetscInt i) {for (PetscInt k=Ajmap2(i); k<Ajmap2(i+1); k++) Aa(Aimap2(i)) += v2(Aperm2(k));}); 175442550becSJunchao Zhang Kokkos::parallel_for(Bnnz2,KOKKOS_LAMBDA(const PetscInt i) {for (PetscInt k=Bjmap2(i); k<Bjmap2(i+1); k++) Ba(Bimap2(i)) += v2(Bperm2(k));}); 175542550becSJunchao Zhang 175642550becSJunchao Zhang ierr = MatSeqAIJRestoreKokkosView(A,&Aa);CHKERRQ(ierr); 175742550becSJunchao Zhang ierr = MatSeqAIJRestoreKokkosView(B,&Ba);CHKERRQ(ierr); 175842550becSJunchao Zhang 175942550becSJunchao Zhang ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 176042550becSJunchao Zhang ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 176142550becSJunchao Zhang PetscFunctionReturn(0); 176242550becSJunchao Zhang } 176342550becSJunchao Zhang 1764076ba34aSJunchao Zhang PetscErrorCode MatDestroy_MPIAIJKokkos(Mat A) 1765076ba34aSJunchao Zhang { 1766076ba34aSJunchao Zhang PetscErrorCode ierr; 176742550becSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)A->data; 1768076ba34aSJunchao Zhang 1769076ba34aSJunchao Zhang PetscFunctionBegin; 1770076ba34aSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1771076ba34aSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJGetLocalMatMerge_C",NULL);CHKERRQ(ierr); 177242550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetPreallocationCOO_C", NULL);CHKERRQ(ierr); 177342550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetValuesCOO_C", NULL);CHKERRQ(ierr); 177442550becSJunchao Zhang delete (Mat_MPIAIJKokkos*)mpiaij->spptr; 1775076ba34aSJunchao Zhang ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr); 1776076ba34aSJunchao Zhang PetscFunctionReturn(0); 1777076ba34aSJunchao Zhang } 1778076ba34aSJunchao Zhang 17798c3ff71bSJunchao Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat A, MatType mtype, MatReuse reuse, Mat* newmat) 17808c3ff71bSJunchao Zhang { 17818c3ff71bSJunchao Zhang PetscErrorCode ierr; 17828c3ff71bSJunchao Zhang Mat B; 1783076ba34aSJunchao Zhang Mat_MPIAIJ *a; 17848c3ff71bSJunchao Zhang 17858c3ff71bSJunchao Zhang PetscFunctionBegin; 17868c3ff71bSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 17878c3ff71bSJunchao Zhang ierr = MatDuplicate(A,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 17888c3ff71bSJunchao Zhang } else if (reuse == MAT_REUSE_MATRIX) { 17898c3ff71bSJunchao Zhang ierr = MatCopy(A,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 17908c3ff71bSJunchao Zhang } 17918c3ff71bSJunchao Zhang B = *newmat; 17928c3ff71bSJunchao Zhang 17936f3d89d0SStefano Zampini B->boundtocpu = PETSC_FALSE; 17948c3ff71bSJunchao Zhang ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 17958c3ff71bSJunchao Zhang ierr = PetscStrallocpy(VECKOKKOS,&B->defaultvectype);CHKERRQ(ierr); 17963d0639e7SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIAIJKOKKOS);CHKERRQ(ierr); 17978c3ff71bSJunchao Zhang 1798076ba34aSJunchao Zhang a = static_cast<Mat_MPIAIJ*>(A->data); 1799076ba34aSJunchao Zhang if (a->A) {ierr = MatSetType(a->A,MATSEQAIJKOKKOS);CHKERRQ(ierr);} 1800076ba34aSJunchao Zhang if (a->B) {ierr = MatSetType(a->B,MATSEQAIJKOKKOS);CHKERRQ(ierr);} 1801076ba34aSJunchao Zhang if (a->lvec) {ierr = VecSetType(a->lvec,VECSEQKOKKOS);CHKERRQ(ierr);} 1802076ba34aSJunchao Zhang 18038c3ff71bSJunchao Zhang B->ops->assemblyend = MatAssemblyEnd_MPIAIJKokkos; 18048c3ff71bSJunchao Zhang B->ops->mult = MatMult_MPIAIJKokkos; 18058c3ff71bSJunchao Zhang B->ops->multadd = MatMultAdd_MPIAIJKokkos; 18068c3ff71bSJunchao Zhang B->ops->multtranspose = MatMultTranspose_MPIAIJKokkos; 1807076ba34aSJunchao Zhang B->ops->productsetfromoptions = MatProductSetFromOptions_MPIAIJKokkos; 1808076ba34aSJunchao Zhang B->ops->destroy = MatDestroy_MPIAIJKokkos; 18098c3ff71bSJunchao Zhang 18103d0639e7SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIAIJSetPreallocation_C",MatMPIAIJSetPreallocation_MPIAIJKokkos);CHKERRQ(ierr); 181142550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIAIJGetLocalMatMerge_C",MatMPIAIJGetLocalMatMerge_MPIAIJKokkos);CHKERRQ(ierr); 181242550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJKokkos);CHKERRQ(ierr); 181342550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJKokkos);CHKERRQ(ierr); 18148c3ff71bSJunchao Zhang PetscFunctionReturn(0); 18158c3ff71bSJunchao Zhang } 18168c3ff71bSJunchao Zhang 18178c3ff71bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJKokkos(Mat A) 18188c3ff71bSJunchao Zhang { 18198c3ff71bSJunchao Zhang PetscErrorCode ierr; 18208c3ff71bSJunchao Zhang 18218c3ff71bSJunchao Zhang PetscFunctionBegin; 18228c3ff71bSJunchao Zhang ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr); 18238c3ff71bSJunchao Zhang ierr = MatCreate_MPIAIJ(A);CHKERRQ(ierr); 18248c3ff71bSJunchao Zhang ierr = MatConvert_MPIAIJ_MPIAIJKokkos(A,MATMPIAIJKOKKOS,MAT_INPLACE_MATRIX,&A);CHKERRQ(ierr); 18258c3ff71bSJunchao Zhang PetscFunctionReturn(0); 18268c3ff71bSJunchao Zhang } 18278c3ff71bSJunchao Zhang 18288c3ff71bSJunchao Zhang /*@C 18298c3ff71bSJunchao Zhang MatCreateAIJKokkos - Creates a sparse matrix in AIJ (compressed row) format 18308c3ff71bSJunchao Zhang (the default parallel PETSc format). This matrix will ultimately pushed down 18318c3ff71bSJunchao Zhang to Kokkos for calculations. For good matrix 18328c3ff71bSJunchao Zhang assembly performance the user should preallocate the matrix storage by setting 18338c3ff71bSJunchao Zhang the parameter nz (or the array nnz). By setting these parameters accurately, 18348c3ff71bSJunchao Zhang performance during matrix assembly can be increased by more than a factor of 50. 18358c3ff71bSJunchao Zhang 18368c3ff71bSJunchao Zhang Collective 18378c3ff71bSJunchao Zhang 18388c3ff71bSJunchao Zhang Input Parameters: 18398c3ff71bSJunchao Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 18408c3ff71bSJunchao Zhang . m - number of rows 18418c3ff71bSJunchao Zhang . n - number of columns 18428c3ff71bSJunchao Zhang . nz - number of nonzeros per row (same for all rows) 18438c3ff71bSJunchao Zhang - nnz - array containing the number of nonzeros in the various rows 18448c3ff71bSJunchao Zhang (possibly different for each row) or NULL 18458c3ff71bSJunchao Zhang 18468c3ff71bSJunchao Zhang Output Parameter: 18478c3ff71bSJunchao Zhang . A - the matrix 18488c3ff71bSJunchao Zhang 18498c3ff71bSJunchao Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 18508c3ff71bSJunchao Zhang MatXXXXSetPreallocation() paradigm instead of this routine directly. 18518c3ff71bSJunchao Zhang [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 18528c3ff71bSJunchao Zhang 18538c3ff71bSJunchao Zhang Notes: 18548c3ff71bSJunchao Zhang If nnz is given then nz is ignored 18558c3ff71bSJunchao Zhang 18568c3ff71bSJunchao Zhang The AIJ format (also called the Yale sparse matrix format or 18578c3ff71bSJunchao Zhang compressed row storage), is fully compatible with standard Fortran 77 18588c3ff71bSJunchao Zhang storage. That is, the stored row and column indices can begin at 18598c3ff71bSJunchao Zhang either one (as in Fortran) or zero. See the users' manual for details. 18608c3ff71bSJunchao Zhang 18618c3ff71bSJunchao Zhang Specify the preallocated storage with either nz or nnz (not both). 18628c3ff71bSJunchao Zhang Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 18638c3ff71bSJunchao Zhang allocation. For large problems you MUST preallocate memory or you 18648c3ff71bSJunchao Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 18658c3ff71bSJunchao Zhang 18668c3ff71bSJunchao Zhang By default, this format uses inodes (identical nodes) when possible, to 18678c3ff71bSJunchao Zhang improve numerical efficiency of matrix-vector products and solves. We 18688c3ff71bSJunchao Zhang search for consecutive rows with the same nonzero structure, thereby 18698c3ff71bSJunchao Zhang reusing matrix information to achieve increased efficiency. 18708c3ff71bSJunchao Zhang 18718c3ff71bSJunchao Zhang Level: intermediate 18728c3ff71bSJunchao Zhang 18738c3ff71bSJunchao Zhang .seealso: MatCreate(), MatCreateAIJ(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ(), MATMPIAIJKOKKOS, MATAIJKokkos 18748c3ff71bSJunchao Zhang @*/ 18758c3ff71bSJunchao Zhang PetscErrorCode MatCreateAIJKokkos(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 18768c3ff71bSJunchao Zhang { 18778c3ff71bSJunchao Zhang PetscErrorCode ierr; 18788c3ff71bSJunchao Zhang PetscMPIInt size; 18798c3ff71bSJunchao Zhang 18808c3ff71bSJunchao Zhang PetscFunctionBegin; 18818c3ff71bSJunchao Zhang ierr = MatCreate(comm,A);CHKERRQ(ierr); 18828c3ff71bSJunchao Zhang ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1883ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 18848c3ff71bSJunchao Zhang if (size > 1) { 18858c3ff71bSJunchao Zhang ierr = MatSetType(*A,MATMPIAIJKOKKOS);CHKERRQ(ierr); 18868c3ff71bSJunchao Zhang ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 18878c3ff71bSJunchao Zhang } else { 18888c3ff71bSJunchao Zhang ierr = MatSetType(*A,MATSEQAIJKOKKOS);CHKERRQ(ierr); 18898c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr); 18908c3ff71bSJunchao Zhang } 18918c3ff71bSJunchao Zhang PetscFunctionReturn(0); 18928c3ff71bSJunchao Zhang } 18938c3ff71bSJunchao Zhang 1894a587d139SMark // get GPU pointer to stripped down Mat. For both Seq and MPI Mat. 1895042217e8SBarry Smith PetscErrorCode MatKokkosGetDeviceMatWrite(Mat A, PetscSplitCSRDataStructure *B) 1896a587d139SMark { 1897a587d139SMark PetscMPIInt size,rank; 1898a587d139SMark MPI_Comm comm; 1899a587d139SMark PetscErrorCode ierr; 1900042217e8SBarry Smith PetscSplitCSRDataStructure d_mat=NULL; 1901a587d139SMark 1902a587d139SMark PetscFunctionBegin; 1903a587d139SMark ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 190455b25c41SPierre Jolivet ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 190555b25c41SPierre Jolivet ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 1906a587d139SMark if (size == 1) { 1907a587d139SMark ierr = MatSeqAIJKokkosGetDeviceMat(A,&d_mat);CHKERRQ(ierr); 1908fc76dfabSMark Adams ierr = MatSeqAIJKokkosModifyDevice(A);CHKERRQ(ierr); /* Since we are going to modify matrix values on device */ 1909a587d139SMark } else { 1910a587d139SMark Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 1911a587d139SMark ierr = MatSeqAIJKokkosGetDeviceMat(aij->A,&d_mat);CHKERRQ(ierr); 1912fc76dfabSMark Adams ierr = MatSeqAIJKokkosModifyDevice(aij->A);CHKERRQ(ierr); 1913fc76dfabSMark Adams ierr = MatSeqAIJKokkosModifyDevice(aij->B);CHKERRQ(ierr); 19149ace16cdSJacob Faibussowitsch PetscAssert(A->nooffprocentries || aij->donotstash,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Device assembly does not currently support offproc values insertion. Use MatSetOption(A,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) or MatSetOption(A,MAT_IGNORE_OFF_PROC_ENTRIES,PETSC_TRUE)"); 1915a587d139SMark } 1916a587d139SMark // act like MatSetValues because not called on host 1917a587d139SMark if (A->assembled) { 1918a587d139SMark if (A->was_assembled) { 1919a587d139SMark ierr = PetscInfo(A,"Assemble more than once already\n");CHKERRQ(ierr); 1920a587d139SMark } 1921a587d139SMark A->was_assembled = PETSC_TRUE; // this is done (lazy) in MatAssemble but we are not calling it anymore - done in AIJ AssemblyEnd, need here? 1922a587d139SMark } else { 19237d3de750SJacob Faibussowitsch ierr = PetscInfo(A,"Warning !assemble ??? assembled=%" PetscInt_FMT "\n",A->assembled);CHKERRQ(ierr); 1924a587d139SMark } 1925a587d139SMark if (!d_mat) { 1926042217e8SBarry Smith struct _n_SplitCSRMat h_mat; /* host container */ 1927a587d139SMark Mat_SeqAIJKokkos *aijkokA; 1928a587d139SMark Mat_SeqAIJ *jaca; 1929a587d139SMark PetscInt n = A->rmap->n, nnz; 1930a587d139SMark Mat Amat; 1931042217e8SBarry Smith PetscInt *colmap; 1932042217e8SBarry Smith 1933042217e8SBarry Smith /* create and copy h_mat */ 193449b994a9SMark Adams h_mat.M = A->cmap->N; // use for debug build 1935a587d139SMark ierr = PetscInfo(A,"Create device matrix in Kokkos\n");CHKERRQ(ierr); 1936a587d139SMark if (size == 1) { 1937a587d139SMark Amat = A; 1938a587d139SMark jaca = (Mat_SeqAIJ*)A->data; 1939a587d139SMark h_mat.rstart = 0; h_mat.rend = A->rmap->n; 1940a587d139SMark h_mat.cstart = 0; h_mat.cend = A->cmap->n; 1941a587d139SMark h_mat.offdiag.i = h_mat.offdiag.j = NULL; 1942a587d139SMark h_mat.offdiag.a = NULL; 1943a587d139SMark aijkokA = static_cast<Mat_SeqAIJKokkos*>(A->spptr); 1944a587d139SMark } else { 1945a587d139SMark Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 1946a587d139SMark Mat_SeqAIJ *jacb = (Mat_SeqAIJ*)aij->B->data; 1947a587d139SMark PetscInt ii; 1948a587d139SMark Mat_SeqAIJKokkos *aijkokB; 1949042217e8SBarry Smith 1950a587d139SMark Amat = aij->A; 1951a587d139SMark aijkokA = static_cast<Mat_SeqAIJKokkos*>(aij->A->spptr); 1952a587d139SMark aijkokB = static_cast<Mat_SeqAIJKokkos*>(aij->B->spptr); 1953a587d139SMark jaca = (Mat_SeqAIJ*)aij->A->data; 19549ace16cdSJacob Faibussowitsch PetscAssertFalse(aij->B->cmap->n && !aij->garray,comm,PETSC_ERR_PLIB,"MPIAIJ Matrix was assembled but is missing garray"); 19559ace16cdSJacob Faibussowitsch PetscAssertFalse(aij->B->rmap->n != aij->A->rmap->n,comm,PETSC_ERR_SUP,"Only support aij->B->rmap->n == aij->A->rmap->n"); 1956a587d139SMark aij->donotstash = PETSC_TRUE; 1957a587d139SMark aij->A->nooffprocentries = aij->B->nooffprocentries = A->nooffprocentries = PETSC_TRUE; 1958a5b23f4aSJose E. Roman jaca->nonew = jacb->nonew = PETSC_TRUE; // no more disassembly 1959042217e8SBarry Smith ierr = PetscCalloc1(A->cmap->N,&colmap);CHKERRQ(ierr); 1960042217e8SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,(A->cmap->N)*sizeof(PetscInt));CHKERRQ(ierr); 1961042217e8SBarry Smith for (ii=0; ii<aij->B->cmap->n; ii++) colmap[aij->garray[ii]] = ii+1; 1962a587d139SMark // allocate B copy data 1963a587d139SMark h_mat.rstart = A->rmap->rstart; h_mat.rend = A->rmap->rend; 1964a587d139SMark h_mat.cstart = A->cmap->rstart; h_mat.cend = A->cmap->rend; 1965a587d139SMark nnz = jacb->i[n]; 1966a587d139SMark if (jacb->compressedrow.use) { 1967a587d139SMark const Kokkos::View<PetscInt*, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_i_k (jacb->i,n+1); 1968300d22a6SJunchao Zhang aijkokB->i_uncompressed_d = Kokkos::View<PetscInt*>(Kokkos::create_mirror(DefaultMemorySpace(),h_i_k)); 1969300d22a6SJunchao Zhang Kokkos::deep_copy (aijkokB->i_uncompressed_d, h_i_k); 1970300d22a6SJunchao Zhang h_mat.offdiag.i = aijkokB->i_uncompressed_d.data(); 1971a587d139SMark } else { 197299551766SMark Adams h_mat.offdiag.i = aijkokB->i_device_data(); 1973a587d139SMark } 197499551766SMark Adams h_mat.offdiag.j = aijkokB->j_device_data(); 1975076ba34aSJunchao Zhang h_mat.offdiag.a = aijkokB->a_device_data(); 1976a587d139SMark { 1977042217e8SBarry Smith Kokkos::View<PetscInt*, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_colmap_k (colmap,A->cmap->N); 1978300d22a6SJunchao Zhang aijkokB->colmap_d = Kokkos::View<PetscInt*>(Kokkos::create_mirror(DefaultMemorySpace(),h_colmap_k)); 1979300d22a6SJunchao Zhang Kokkos::deep_copy (aijkokB->colmap_d, h_colmap_k); 1980300d22a6SJunchao Zhang h_mat.colmap = aijkokB->colmap_d.data(); 1981042217e8SBarry Smith ierr = PetscFree(colmap);CHKERRQ(ierr); 1982a587d139SMark } 1983a587d139SMark h_mat.offdiag.ignorezeroentries = jacb->ignorezeroentries; 1984a587d139SMark h_mat.offdiag.n = n; 1985a587d139SMark } 1986a587d139SMark // allocate A copy data 1987a587d139SMark nnz = jaca->i[n]; 1988a587d139SMark h_mat.diag.n = n; 1989a587d139SMark h_mat.diag.ignorezeroentries = jaca->ignorezeroentries; 199055b25c41SPierre Jolivet ierr = MPI_Comm_rank(comm,&h_mat.rank);CHKERRMPI(ierr); 19919ace16cdSJacob Faibussowitsch PetscAssertFalse(jaca->compressedrow.use,PETSC_COMM_SELF,PETSC_ERR_PLIB,"A does not suppport compressed row (todo)"); 1992042217e8SBarry Smith else { 199399551766SMark Adams h_mat.diag.i = aijkokA->i_device_data(); 1994a587d139SMark } 199599551766SMark Adams h_mat.diag.j = aijkokA->j_device_data(); 1996076ba34aSJunchao Zhang h_mat.diag.a = aijkokA->a_device_data(); 1997a587d139SMark // copy pointers and metdata to device 1998a587d139SMark ierr = MatSeqAIJKokkosSetDeviceMat(Amat,&h_mat);CHKERRQ(ierr); 1999a587d139SMark ierr = MatSeqAIJKokkosGetDeviceMat(Amat,&d_mat);CHKERRQ(ierr); 20007d3de750SJacob Faibussowitsch ierr = PetscInfo(A,"Create device Mat n=%" PetscInt_FMT " nnz=%" PetscInt_FMT "\n",h_mat.diag.n, nnz);CHKERRQ(ierr); 2001a587d139SMark } 2002a587d139SMark *B = d_mat; // return it, set it in Mat, and set it up 2003a587d139SMark A->assembled = PETSC_FALSE; // ready to write with matsetvalues - this done (lazy) in normal MatSetValues 2004a587d139SMark PetscFunctionReturn(0); 2005a587d139SMark } 2006076ba34aSJunchao Zhang 2007076ba34aSJunchao Zhang PETSC_INTERN PetscErrorCode MatSeqAIJKokkosGetOffloadMask(Mat A, const char **mask) 2008076ba34aSJunchao Zhang { 2009076ba34aSJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos*>(A->spptr); 2010076ba34aSJunchao Zhang 2011076ba34aSJunchao Zhang PetscFunctionBegin; 2012076ba34aSJunchao Zhang if (!aijkok) *mask = "AIJKOK_UNALLOCATED"; 2013076ba34aSJunchao Zhang else if (aijkok->a_dual.need_sync_host()) *mask = "PETSC_OFFLOAD_GPU"; 2014076ba34aSJunchao Zhang else if (aijkok->a_dual.need_sync_device()) *mask = "PETSC_OFFLOAD_CPU"; 2015076ba34aSJunchao Zhang else *mask = "PETSC_OFFLOAD_BOTH"; 2016076ba34aSJunchao Zhang PetscFunctionReturn(0); 2017076ba34aSJunchao Zhang } 2018076ba34aSJunchao Zhang 2019076ba34aSJunchao Zhang PETSC_INTERN PetscErrorCode MatAIJKokkosPrintOffloadMask(Mat A) 2020076ba34aSJunchao Zhang { 2021076ba34aSJunchao Zhang PetscErrorCode ierr; 2022076ba34aSJunchao Zhang PetscMPIInt size; 2023076ba34aSJunchao Zhang Mat Ad,Ao; 2024076ba34aSJunchao Zhang const char *amask,*bmask; 2025076ba34aSJunchao Zhang 2026076ba34aSJunchao Zhang PetscFunctionBegin; 2027076ba34aSJunchao Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr); 2028076ba34aSJunchao Zhang 2029076ba34aSJunchao Zhang if (size == 1) { 2030076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetOffloadMask(A,&amask);CHKERRQ(ierr); 2031076ba34aSJunchao Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"%s\n",amask);CHKERRQ(ierr); 2032076ba34aSJunchao Zhang } else { 2033076ba34aSJunchao Zhang Ad = ((Mat_MPIAIJ*)A->data)->A; 2034076ba34aSJunchao Zhang Ao = ((Mat_MPIAIJ*)A->data)->B; 2035076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetOffloadMask(Ad,&amask);CHKERRQ(ierr); 2036076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetOffloadMask(Ao,&bmask);CHKERRQ(ierr); 2037076ba34aSJunchao Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"Diag : Off-diag = %s : %s\n",amask,bmask);CHKERRQ(ierr); 2038076ba34aSJunchao Zhang } 2039076ba34aSJunchao Zhang PetscFunctionReturn(0); 2040076ba34aSJunchao Zhang } 2041