1d326c3f1SJunchao Zhang #include <petsc_kokkos.hpp> 211d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 3f0e6e2d1SJunchao Zhang #include <petscpkg_version.h> 442550becSJunchao Zhang #include <petsc/private/sfimpl.h> 592896123SJunchao Zhang #include <petsc/private/kokkosimpl.hpp> 62c4ab24aSJunchao Zhang #include <../src/mat/impls/aij/seq/kokkos/aijkok.hpp> 78c3ff71bSJunchao Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8076ba34aSJunchao Zhang #include <KokkosSparse_spadd.hpp> 90e3ece09SJunchao Zhang #include <KokkosSparse_spgemm.hpp> 1011d22bbfSJunchao Zhang 1166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIAIJKokkos(Mat A, MatAssemblyType mode) 12d71ae5a4SJacob Faibussowitsch { 1330203840SJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)A->data; 148c3ff71bSJunchao Zhang 158c3ff71bSJunchao Zhang PetscFunctionBegin; 169566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd_MPIAIJ(A, mode)); 1730203840SJunchao Zhang /* E.g., MatCreateSubMatrix() calls MatCreateMPIAIJWithSeqAIJ(comm,A,B,..), which creates Bnew of SEQAIJ and destroys B of SEQAIJKOKKOS. 1830203840SJunchao Zhang Thus we finalize A/B/lvec's type in MatAssemblyEnd() to handle various cases. 1930203840SJunchao Zhang */ 2030203840SJunchao Zhang if (mode == MAT_FINAL_ASSEMBLY) { 2192896123SJunchao Zhang PetscScalarKokkosView v; 2292896123SJunchao Zhang 2330203840SJunchao Zhang PetscCall(MatSetType(mpiaij->A, MATSEQAIJKOKKOS)); 2430203840SJunchao Zhang PetscCall(MatSetType(mpiaij->B, MATSEQAIJKOKKOS)); 2592896123SJunchao Zhang PetscCall(VecSetType(mpiaij->lvec, VECSEQKOKKOS)); // lvec is init'ed on host, without copying to device 2692896123SJunchao Zhang PetscCall(VecGetKokkosViewWrite(mpiaij->lvec, &v)); // mark lvec updated on device, as we never need to init lvec on device 2792896123SJunchao Zhang PetscCall(VecRestoreKokkosViewWrite(mpiaij->lvec, &v)); 2830203840SJunchao Zhang } 293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 308c3ff71bSJunchao Zhang } 318c3ff71bSJunchao Zhang 3266976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJKokkos(Mat mat, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 33d71ae5a4SJacob Faibussowitsch { 342cdb1aeaSJunchao Zhang Mat_MPIAIJ *mpiaij; 358c3ff71bSJunchao Zhang 368c3ff71bSJunchao Zhang PetscFunctionBegin; 372cdb1aeaSJunchao Zhang // reuse MPIAIJ's preallocation, which sets A/B's blocksize along other things 382cdb1aeaSJunchao Zhang PetscCall(MatMPIAIJSetPreallocation_MPIAIJ(mat, d_nz, d_nnz, o_nz, o_nnz)); 392cdb1aeaSJunchao Zhang mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 402cdb1aeaSJunchao Zhang PetscCall(MatConvert_SeqAIJ_SeqAIJKokkos(mpiaij->A, MATSEQAIJKOKKOS, MAT_INPLACE_MATRIX, &mpiaij->A)); 412cdb1aeaSJunchao Zhang PetscCall(MatConvert_SeqAIJ_SeqAIJKokkos(mpiaij->B, MATSEQAIJKOKKOS, MAT_INPLACE_MATRIX, &mpiaij->B)); 423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 438c3ff71bSJunchao Zhang } 448c3ff71bSJunchao Zhang 4566976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJKokkos(Mat mat, Vec xx, Vec yy) 46d71ae5a4SJacob Faibussowitsch { 478c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 488c3ff71bSJunchao Zhang PetscInt nt; 498c3ff71bSJunchao Zhang 508c3ff71bSJunchao Zhang PetscFunctionBegin; 519566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 5208401ef6SPierre Jolivet PetscCheck(nt == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->cmap->n, nt); 539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 549566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->mult)(mpiaij->A, xx, yy)); 559566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 569566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multadd)(mpiaij->B, mpiaij->lvec, yy, yy)); 573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 588c3ff71bSJunchao Zhang } 598c3ff71bSJunchao Zhang 6066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJKokkos(Mat mat, Vec xx, Vec yy, Vec zz) 61d71ae5a4SJacob Faibussowitsch { 628c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 638c3ff71bSJunchao Zhang PetscInt nt; 648c3ff71bSJunchao Zhang 658c3ff71bSJunchao Zhang PetscFunctionBegin; 669566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 6708401ef6SPierre Jolivet PetscCheck(nt == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->cmap->n, nt); 689566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 699566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->multadd)(mpiaij->A, xx, yy, zz)); 709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, xx, mpiaij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 719566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multadd)(mpiaij->B, mpiaij->lvec, zz, zz)); 723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 738c3ff71bSJunchao Zhang } 748c3ff71bSJunchao Zhang 7566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJKokkos(Mat mat, Vec xx, Vec yy) 76d71ae5a4SJacob Faibussowitsch { 778c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 788c3ff71bSJunchao Zhang PetscInt nt; 798c3ff71bSJunchao Zhang 808c3ff71bSJunchao Zhang PetscFunctionBegin; 819566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 8208401ef6SPierre Jolivet PetscCheck(nt == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", mat->rmap->n, nt); 839566063dSJacob Faibussowitsch PetscCall((*mpiaij->B->ops->multtranspose)(mpiaij->B, xx, mpiaij->lvec)); 849566063dSJacob Faibussowitsch PetscCall((*mpiaij->A->ops->multtranspose)(mpiaij->A, xx, yy)); 859566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mpiaij->Mvctx, mpiaij->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 869566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mpiaij->Mvctx, mpiaij->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 888c3ff71bSJunchao Zhang } 898c3ff71bSJunchao Zhang 90076ba34aSJunchao Zhang /* Merge the "A, B" matrices of mat into a matrix C. mat's type is MPIAIJKOKKOS. C's type is MATSEQAIJKOKKOS. 91076ba34aSJunchao Zhang A is put before B. C's size would be A->rmap->n by (A->cmap->n + B->cmap->n). 92076ba34aSJunchao Zhang C still uses local column ids. Their corresponding global column ids are returned in glob. 93076ba34aSJunchao Zhang */ 9466976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIAIJGetLocalMatMerge_MPIAIJKokkos(Mat mat, MatReuse reuse, IS *glob, Mat *C) 95d71ae5a4SJacob Faibussowitsch { 96076ba34aSJunchao Zhang Mat Ad, Ao; 97076ba34aSJunchao Zhang const PetscInt *cmap; 98076ba34aSJunchao Zhang 99076ba34aSJunchao Zhang PetscFunctionBegin; 1009566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(mat, &Ad, &Ao, &cmap)); 1019566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosMergeMats(Ad, Ao, reuse, C)); 102076ba34aSJunchao Zhang if (glob) { 103076ba34aSJunchao Zhang PetscInt cst, i, dn, on, *gidx; 1049566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, NULL, &dn)); 1059566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 1069566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cst, NULL)); 1079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 108076ba34aSJunchao Zhang for (i = 0; i < dn; i++) gidx[i] = cst + i; 109076ba34aSJunchao Zhang for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 1109566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 111076ba34aSJunchao Zhang } 1123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 113076ba34aSJunchao Zhang } 114076ba34aSJunchao Zhang 1150e3ece09SJunchao Zhang /* Structs used in matrix products of type C=AB, C=A^tB and C=B^tAB */ 116076ba34aSJunchao Zhang struct MatMatStruct { 1170e3ece09SJunchao Zhang PetscInt n, *garray; // C's garray and its size. 1180e3ece09SJunchao Zhang KokkosCsrMatrix Cd, Co; // C is in split form matrices (all in local column indcies) 1190e3ece09SJunchao Zhang KokkosCsrMatrix C1, C2, C3, C4; // intermediate mat products 1200e3ece09SJunchao Zhang KokkosCsrMatrix C2_mid, C4_mid; // alias of C2, C4; share their a[], i[], but with different j[] (hence column size) 1210e3ece09SJunchao Zhang PetscIntKokkosView E_NzLeft; 1220e3ece09SJunchao Zhang PetscSF sf = nullptr; // SF to bcast or reduce matrices E to F 1230e3ece09SJunchao Zhang MatScalarKokkosView rootBuf, leafBuf; 1240e3ece09SJunchao Zhang KokkosCsrMatrix Fd, Fo; // F in split form 1250e3ece09SJunchao Zhang 1260e3ece09SJunchao Zhang KernelHandle kh1; // compute C1, add C1+C3 or C1+Fd 1270e3ece09SJunchao Zhang KernelHandle kh2; // compute C2, add C2+C4 or C2+Fo 1280e3ece09SJunchao Zhang KernelHandle kh3; // compute C3 1290e3ece09SJunchao Zhang KernelHandle kh4; // compute C4 1300e3ece09SJunchao Zhang 131aaa8cc7dSPierre Jolivet PetscInt E_TeamSize; // kernel launching parameters in merging E or splitting F 1320e3ece09SJunchao Zhang PetscInt E_VectorLength; 1330e3ece09SJunchao Zhang PetscInt E_RowsPerTeam; 1340e3ece09SJunchao Zhang PetscInt F_TeamSize; 1350e3ece09SJunchao Zhang PetscInt F_VectorLength; 1360e3ece09SJunchao Zhang PetscInt F_RowsPerTeam; 137076ba34aSJunchao Zhang 138d71ae5a4SJacob Faibussowitsch ~MatMatStruct() 139d71ae5a4SJacob Faibussowitsch { 1403ba16761SJacob Faibussowitsch PetscFunctionBegin; 1413ba16761SJacob Faibussowitsch PetscCallAbort(PETSC_COMM_SELF, PetscSFDestroy(&sf)); 1423ba16761SJacob Faibussowitsch PetscFunctionReturnVoid(); 143076ba34aSJunchao Zhang } 144076ba34aSJunchao Zhang }; 145076ba34aSJunchao Zhang 146076ba34aSJunchao Zhang struct MatMatStruct_AB : public MatMatStruct { 1470e3ece09SJunchao Zhang PetscIntKokkosView F_NzLeft; // plans to split F (in leafbuf) into Fd, Fo 1480e3ece09SJunchao Zhang PetscIntKokkosView irootloc; // plans to put E (i.e., Bd, Bo) into rootBuf 1490e3ece09SJunchao Zhang PetscIntKokkosView rowoffset; 150076ba34aSJunchao Zhang }; 151076ba34aSJunchao Zhang 152076ba34aSJunchao Zhang struct MatMatStruct_AtB : public MatMatStruct { 1530e3ece09SJunchao Zhang MatColIdxKokkosView Fdjmap; // plans to reduce data in rootBuf to Fd, Fo 1540e3ece09SJunchao Zhang MatColIdxKokkosView Fdjperm; 1550e3ece09SJunchao Zhang MatColIdxKokkosView Fojmap; 1560e3ece09SJunchao Zhang MatColIdxKokkosView Fojperm; 157076ba34aSJunchao Zhang }; 158076ba34aSJunchao Zhang 1599371c9d4SSatish Balay struct MatProductData_MPIAIJKokkos { 1603ba16761SJacob Faibussowitsch MatMatStruct_AB *mmAB = nullptr; 1613ba16761SJacob Faibussowitsch MatMatStruct_AtB *mmAtB = nullptr; 1623ba16761SJacob Faibussowitsch PetscBool reusesym = PETSC_FALSE; 1630e3ece09SJunchao Zhang Mat Z = nullptr; // store Z=AB in computing BtAB 164076ba34aSJunchao Zhang 165d71ae5a4SJacob Faibussowitsch ~MatProductData_MPIAIJKokkos() 166d71ae5a4SJacob Faibussowitsch { 167076ba34aSJunchao Zhang delete mmAB; 168076ba34aSJunchao Zhang delete mmAtB; 1690e3ece09SJunchao Zhang PetscCallAbort(PETSC_COMM_SELF, MatDestroy(&Z)); 170076ba34aSJunchao Zhang } 171076ba34aSJunchao Zhang }; 172076ba34aSJunchao Zhang 173d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductDataDestroy_MPIAIJKokkos(void *data) 174d71ae5a4SJacob Faibussowitsch { 175076ba34aSJunchao Zhang PetscFunctionBegin; 1769566063dSJacob Faibussowitsch PetscCallCXX(delete static_cast<MatProductData_MPIAIJKokkos *>(data)); 1773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 178076ba34aSJunchao Zhang } 179076ba34aSJunchao Zhang 180076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices - Set the diag and offdiag matrices of a MATMPIAIJKOKKOS matrix. 181076ba34aSJunchao Zhang It is similar to MatCreateMPIAIJWithSplitArrays. 182076ba34aSJunchao Zhang 183076ba34aSJunchao Zhang Input Parameters: 184076ba34aSJunchao Zhang + mat - the MATMPIAIJKOKKOS matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set 185076ba34aSJunchao Zhang . A - the diag matrix using local col ids 186076ba34aSJunchao Zhang - B - the offdiag matrix using global col ids 187076ba34aSJunchao Zhang 1882fe279fdSBarry Smith Output Parameter: 189076ba34aSJunchao Zhang . mat - the updated MATMPIAIJKOKKOS matrix 190076ba34aSJunchao Zhang */ 1910e3ece09SJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Mat mat, Mat A, Mat B, PetscInt *garray) 192d71ae5a4SJacob Faibussowitsch { 193076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 194076ba34aSJunchao Zhang PetscInt m, n, M, N, Am, An, Bm, Bn; 195076ba34aSJunchao Zhang 196076ba34aSJunchao Zhang PetscFunctionBegin; 1979566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 1989566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 1999566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &Am, &An)); 2009566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(B, &Bm, &Bn)); 201076ba34aSJunchao Zhang 202aed4548fSBarry Smith PetscCheck(m == Am && m == Bm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of rows do not match"); 20308401ef6SPierre Jolivet PetscCheck(n == An, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of columns do not match"); 2040e3ece09SJunchao Zhang // PetscCheck(N == Bn, PETSC_COMM_SELF, PETSC_ERR_PLIB, "global number of columns do not match"); 20508401ef6SPierre Jolivet PetscCheck(!mpiaij->A && !mpiaij->B, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A, B of the MPIAIJ matrix are not empty"); 206076ba34aSJunchao Zhang mpiaij->A = A; 207076ba34aSJunchao Zhang mpiaij->B = B; 2080e3ece09SJunchao Zhang mpiaij->garray = garray; 209076ba34aSJunchao Zhang 210076ba34aSJunchao Zhang mat->preallocated = PETSC_TRUE; 211076ba34aSJunchao Zhang mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 212076ba34aSJunchao Zhang 2139566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 2149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 215076ba34aSJunchao Zhang /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 216076ba34aSJunchao Zhang also gets mpiaij->B compacted, with its col ids and size reduced 217076ba34aSJunchao Zhang */ 2189566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 2199566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 2209566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 222076ba34aSJunchao Zhang } 223076ba34aSJunchao Zhang 2240e3ece09SJunchao Zhang // Adapted from Kokkos-Kernels spmv_launch_parameters(), to get parameters in Kokkos nested loops which we used to merge or 2250e3ece09SJunchao Zhang // split csr matrices. The rule is to have "vector_length * team_size" be around 256 on GPUs (e.g., for a CUDA thread block) 2260e3ece09SJunchao Zhang template <class ExecutionSpace> 2270e3ece09SJunchao Zhang static PetscErrorCode MatMergeGetLaunchParameters(PetscInt numRows, PetscInt nnz, PetscInt rows_per_thread, PetscInt &team_size, PetscInt &vector_length, PetscInt &rows_per_team) 228d71ae5a4SJacob Faibussowitsch { 2290e3ece09SJunchao Zhang Kokkos::TeamPolicy<ExecutionSpace> teamPolicy(128, Kokkos::AUTO); 230076ba34aSJunchao Zhang 231076ba34aSJunchao Zhang PetscFunctionBegin; 2320e3ece09SJunchao Zhang PetscInt nnz_per_row = numRows ? (nnz / numRows) : 0; // we might meet empty matrices 233076ba34aSJunchao Zhang 2340e3ece09SJunchao Zhang if (nnz_per_row < 1) nnz_per_row = 1; 235076ba34aSJunchao Zhang 2360e3ece09SJunchao Zhang int max_vector_length = teamPolicy.vector_length_max(); 237076ba34aSJunchao Zhang 2380e3ece09SJunchao Zhang if (vector_length < 1) { 2390e3ece09SJunchao Zhang vector_length = 1; 2400e3ece09SJunchao Zhang while (vector_length < max_vector_length && vector_length * 6 < nnz_per_row) vector_length *= 2; 241076ba34aSJunchao Zhang } 242076ba34aSJunchao Zhang 2430e3ece09SJunchao Zhang // Determine rows per thread 2440e3ece09SJunchao Zhang if (rows_per_thread < 1) { 2450e3ece09SJunchao Zhang if (KokkosKernels::Impl::kk_is_gpu_exec_space<ExecutionSpace>()) rows_per_thread = 1; 2460e3ece09SJunchao Zhang else { 2470e3ece09SJunchao Zhang if (nnz_per_row < 20 && nnz > 5000000) { 2480e3ece09SJunchao Zhang rows_per_thread = 256; 2490e3ece09SJunchao Zhang } else rows_per_thread = 64; 250076ba34aSJunchao Zhang } 251076ba34aSJunchao Zhang } 252076ba34aSJunchao Zhang 2530e3ece09SJunchao Zhang if (team_size < 1) { 2540e3ece09SJunchao Zhang if (KokkosKernels::Impl::kk_is_gpu_exec_space<ExecutionSpace>()) { 2550e3ece09SJunchao Zhang team_size = 256 / vector_length; 256076ba34aSJunchao Zhang } else { 2570e3ece09SJunchao Zhang team_size = 1; 2580e3ece09SJunchao Zhang } 259076ba34aSJunchao Zhang } 260076ba34aSJunchao Zhang 2610e3ece09SJunchao Zhang rows_per_team = rows_per_thread * team_size; 262076ba34aSJunchao Zhang 2630e3ece09SJunchao Zhang if (rows_per_team < 0) { 2640e3ece09SJunchao Zhang PetscInt nnz_per_team = 4096; 2650e3ece09SJunchao Zhang PetscInt conc = ExecutionSpace().concurrency(); 2660e3ece09SJunchao Zhang while ((conc * nnz_per_team * 4 > nnz) && (nnz_per_team > 256)) nnz_per_team /= 2; 2670e3ece09SJunchao Zhang rows_per_team = (nnz_per_team + nnz_per_row - 1) / nnz_per_row; 2680e3ece09SJunchao Zhang } 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 270076ba34aSJunchao Zhang } 271076ba34aSJunchao Zhang 2720e3ece09SJunchao Zhang /* 2730e3ece09SJunchao Zhang Reduce two sets of global indices into local ones 274076ba34aSJunchao Zhang 275076ba34aSJunchao Zhang Input Parameters: 2760e3ece09SJunchao Zhang + n1 - size of garray1[], the first set 2770e3ece09SJunchao Zhang . garray1[n1] - a sorted global index array (without duplicates) 2780e3ece09SJunchao Zhang . m - size of indices[], the second set 2790e3ece09SJunchao Zhang - indices[m] - a unsorted global index array (might have duplicates), which will be updated on output into local ones 280076ba34aSJunchao Zhang 281076ba34aSJunchao Zhang Output Parameters: 2820e3ece09SJunchao Zhang + n2 - size of garray2[], the merged set, which combines garray1[] and indices[] 2830e3ece09SJunchao Zhang . garray2[n2] - allocated by callee using PetscMalloc1(). Contains sorted unique global indices (without duplicates). Caller needs to free it. 2840e3ece09SJunchao Zhang . map[n1] - allocated by caller. It gives garray1[i] = garray2[map[i]] 2850e3ece09SJunchao Zhang - indices[m] - on output, global indices in this array are rewritten with local ones, i.e, indices_input[i] = garray2[indices_output[i]] 286076ba34aSJunchao Zhang 2870e3ece09SJunchao Zhang Example, say 2880e3ece09SJunchao Zhang n1 = 5 2890e3ece09SJunchao Zhang garray1[5] = {1, 4, 7, 8, 10} 2900e3ece09SJunchao Zhang m = 4 2910e3ece09SJunchao Zhang indices[4] = {2, 4, 8, 9} 29211a5261eSBarry Smith 2930e3ece09SJunchao Zhang Combining them together, we have 7 global indices in garray2[] 2940e3ece09SJunchao Zhang n2 = 7 2950e3ece09SJunchao Zhang garray2[7] = {1, 2, 4, 7, 8, 9, 10} 2960e3ece09SJunchao Zhang 2970e3ece09SJunchao Zhang And we have map[] to connect "garray1[i] = garray2[map[i]], i=[0,n1)" 2980e3ece09SJunchao Zhang map[5] = {0, 2, 3, 4, 6} 2990e3ece09SJunchao Zhang 3000e3ece09SJunchao Zhang On output, indices[] is updated with local indices 3010e3ece09SJunchao Zhang indices[4] = {1, 2, 4, 5} 302076ba34aSJunchao Zhang */ 3030e3ece09SJunchao Zhang static PetscErrorCode ReduceTwoSetsOfGlobalIndices(PetscInt n1, const PetscInt *garray1, PetscInt m, PetscInt *indices, PetscInt *n2_, PetscInt **garray2_, PetscInt *map) 304d71ae5a4SJacob Faibussowitsch { 3050e3ece09SJunchao Zhang PetscHMapI g2l = nullptr; 3060e3ece09SJunchao Zhang PetscHashIter iter; 3070e3ece09SJunchao Zhang PetscInt tot, key, val; // total unique global indices. key is global id; val is local id 3080e3ece09SJunchao Zhang PetscInt n2, *garray2; 309076ba34aSJunchao Zhang 310076ba34aSJunchao Zhang PetscFunctionBegin; 3110e3ece09SJunchao Zhang tot = 0; 3120e3ece09SJunchao Zhang PetscCall(PetscHMapICreateWithSize(n1, &g2l)); 3130e3ece09SJunchao Zhang for (PetscInt i = 0; i < m; i++) { // insert those in indices[] 3140e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, indices[i], -1, &val)); // if not exist, val is set with -1 3150e3ece09SJunchao Zhang if (val < 0) PetscCall(PetscHMapISet(g2l, indices[i], tot++)); // val < 0 means gid is not in the hash table yet 316076ba34aSJunchao Zhang } 317076ba34aSJunchao Zhang 3180e3ece09SJunchao Zhang for (PetscInt i = 0; i < n1; i++) { // insert those in garray1[] 3190e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, garray1[i], -1, &val)); 3200e3ece09SJunchao Zhang if (val < 0) PetscCall(PetscHMapISet(g2l, garray1[i], tot++)); 321076ba34aSJunchao Zhang } 322076ba34aSJunchao Zhang 3230e3ece09SJunchao Zhang // Pull out (unique) globals in the hash table and put them in garray2[] 3240e3ece09SJunchao Zhang n2 = tot; 3250e3ece09SJunchao Zhang PetscCall(PetscMalloc1(n2, &garray2)); 3260e3ece09SJunchao Zhang tot = 0; 3270e3ece09SJunchao Zhang PetscHashIterBegin(g2l, iter); 3280e3ece09SJunchao Zhang while (!PetscHashIterAtEnd(g2l, iter)) { 3290e3ece09SJunchao Zhang PetscHashIterGetKey(g2l, iter, key); 3300e3ece09SJunchao Zhang PetscHashIterNext(g2l, iter); 3310e3ece09SJunchao Zhang garray2[tot++] = key; 332076ba34aSJunchao Zhang } 333076ba34aSJunchao Zhang 3340e3ece09SJunchao Zhang // Sort garray2[] and then map them to local indices starting from 0 3350e3ece09SJunchao Zhang PetscCall(PetscSortInt(n2, garray2)); 3360e3ece09SJunchao Zhang PetscCall(PetscHMapIClear(g2l)); 3370e3ece09SJunchao Zhang for (PetscInt i = 0; i < tot; i++) PetscCall(PetscHMapISet(g2l, garray2[i], i)); // i is the local id 338f0e6e2d1SJunchao Zhang 3390e3ece09SJunchao Zhang // Rewrite indices[] with local indices 340f0e6e2d1SJunchao Zhang for (PetscInt i = 0; i < m; i++) { 3410e3ece09SJunchao Zhang PetscCall(PetscHMapIGetWithDefault(g2l, indices[i], -1, &val)); 3420e3ece09SJunchao Zhang PetscAssert(val >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Met a negative local column index"); 3430e3ece09SJunchao Zhang indices[i] = val; 3440e3ece09SJunchao Zhang } 3450e3ece09SJunchao Zhang // Record the map that maps garray1[i] to garray2[map[i]] 3460e3ece09SJunchao Zhang for (PetscInt i = 0; i < n1; i++) PetscCall(PetscHMapIGetWithDefault(g2l, garray1[i], -1, &map[i])); 3470e3ece09SJunchao Zhang PetscCall(PetscHMapIDestroy(&g2l)); 3480e3ece09SJunchao Zhang *n2_ = n2; 3490e3ece09SJunchao Zhang *garray2_ = garray2; 3500e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 3510e3ece09SJunchao Zhang } 352f0e6e2d1SJunchao Zhang 3530e3ece09SJunchao Zhang /* 3540e3ece09SJunchao Zhang MatMPIAIJKokkosReduce - Reduce rows of a MPIAIJKOKKOS matrix (E, in split form) to produce another matrix (F, also in split form, stored in mm) 3550e3ece09SJunchao Zhang 3560e3ece09SJunchao Zhang It is the reverse of MatMPIAIJKokkosBcast() in some sense, but with a different signature since we do not really need a fully populated MPIAIJKOKKOS E. 3570e3ece09SJunchao Zhang 3580e3ece09SJunchao Zhang Think each row of E as a leaf, then the given ownerSF specifies roots for the leaves. Roots may connect to multiple leaves. 3590e3ece09SJunchao Zhang In this routine, we sparse-merge leaves (rows) at their roots to form potentially longer rows in F. F's number of rows will be nroots of ownerSF. 3600e3ece09SJunchao Zhang 3610e3ece09SJunchao Zhang Input Parameters: 3620e3ece09SJunchao Zhang + comm - MPI communicator of E 3630e3ece09SJunchao Zhang . A - diag block of E, using local column indices 3640e3ece09SJunchao Zhang . B - off-diag block of E, using local column indices 3650e3ece09SJunchao Zhang . cstart - (global) start column of Ed 3660e3ece09SJunchao Zhang . cend - (global) end column + 1 of Ed. In other words, E's column ownership is in range of [cstart, cend) 3670e3ece09SJunchao Zhang . garray1[n1] - global column indices of Eo. Here n1 is Eo's column size. 3680e3ece09SJunchao Zhang . ownerSF - the SF specifies ownership (root) of rows in E 3690e3ece09SJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 3700e3ece09SJunchao Zhang - mm - to stash intermediate data structures for reuse 3710e3ece09SJunchao Zhang 3720e3ece09SJunchao Zhang Output Parameters: 3730e3ece09SJunchao Zhang + map[n1] - allocated by caller. It maps garray1[] to garray2[]. See more at ReduceTwoSetsOfGlobalIndices(). 3740e3ece09SJunchao Zhang - mm - contains various info, such as garray2[], F (Fd, Fo) etc. 3750e3ece09SJunchao Zhang 3760e3ece09SJunchao Zhang Notes: 3770e3ece09SJunchao Zhang When reuse = MAT_REUSE_MATRIX, cstart, cend, garray1, ownerSF, map are not significant. 3780e3ece09SJunchao Zhang 3790e3ece09SJunchao Zhang */ 3800e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosReduceBegin(MPI_Comm comm, KokkosCsrMatrix A, KokkosCsrMatrix B, PetscInt cstart, PetscInt cend, const PetscInt *garray1, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AtB *mm) 3810e3ece09SJunchao Zhang { 3820e3ece09SJunchao Zhang PetscFunctionBegin; 3830e3ece09SJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 3840e3ece09SJunchao Zhang PetscInt Em = A.numRows(), Fm; 3850e3ece09SJunchao Zhang PetscInt n1 = B.numCols(); 3860e3ece09SJunchao Zhang 3870e3ece09SJunchao Zhang PetscCall(PetscSFGetGraph(ownerSF, &Fm, NULL, NULL, NULL)); // Fm = #rows of F = nroots of ownerSF 3880e3ece09SJunchao Zhang 3890e3ece09SJunchao Zhang // Do the analysis on host 3900e3ece09SJunchao Zhang auto Ai_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), A.graph.row_map); 3910e3ece09SJunchao Zhang auto Aj_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), A.graph.entries); 3920e3ece09SJunchao Zhang auto Bi_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), B.graph.row_map); 3930e3ece09SJunchao Zhang auto Bj_h = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace(), B.graph.entries); 3940e3ece09SJunchao Zhang const MatRowMapType *Ai = Ai_h.data(), *Bi = Bi_h.data(); 3950e3ece09SJunchao Zhang const MatColIdxType *Aj = Aj_h.data(), *Bj = Bj_h.data(); 3960e3ece09SJunchao Zhang 3970e3ece09SJunchao Zhang // Count how many nonzeros of each row in E are in the left of the diag block [cstart,cend) 3987b8d4ba6SJunchao Zhang PetscIntKokkosViewHost E_NzLeft_h(NoInit("E_NzLeft_h"), Em), E_RowLen_h(NoInit("E_RowLen_h"), Em); 3990e3ece09SJunchao Zhang PetscInt *E_NzLeft = E_NzLeft_h.data(), *E_RowLen = E_RowLen_h.data(); 4000e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) { 4010e3ece09SJunchao Zhang const PetscInt *first, *last, *it; 4020e3ece09SJunchao Zhang PetscInt count, step; 4030e3ece09SJunchao Zhang // std::lower_bound(first,last,cstart), but need to use global column indices 4040e3ece09SJunchao Zhang first = Bj + Bi[i]; 4050e3ece09SJunchao Zhang last = Bj + Bi[i + 1]; 406f0e6e2d1SJunchao Zhang count = last - first; 407f0e6e2d1SJunchao Zhang while (count > 0) { 408f0e6e2d1SJunchao Zhang it = first; 409f0e6e2d1SJunchao Zhang step = count / 2; 410f0e6e2d1SJunchao Zhang it += step; 4110e3ece09SJunchao Zhang if (garray1[*it] < cstart) { // map local to global 412f0e6e2d1SJunchao Zhang first = ++it; 413f0e6e2d1SJunchao Zhang count -= step + 1; 414f0e6e2d1SJunchao Zhang } else count = step; 415f0e6e2d1SJunchao Zhang } 4160e3ece09SJunchao Zhang E_NzLeft[i] = first - (Bj + Bi[i]); 4170e3ece09SJunchao Zhang E_RowLen[i] = (Ai[i + 1] - Ai[i]) + (Bi[i + 1] - Bi[i]); 418f0e6e2d1SJunchao Zhang } 419f0e6e2d1SJunchao Zhang 4200e3ece09SJunchao Zhang // Get length of rows (i.e., sizes of leaves) that contribute to my roots 4210e3ece09SJunchao Zhang const PetscMPIInt *iranks, *ranks; 4220e3ece09SJunchao Zhang const PetscInt *ioffset, *irootloc, *roffset, *rmine; 423*c09cee04SJames Wright PetscMPIInt niranks, nranks; 4240e3ece09SJunchao Zhang MPI_Request *reqs; 4250e3ece09SJunchao Zhang PetscMPIInt tag; 4260e3ece09SJunchao Zhang PetscSF reduceSF; 4270e3ece09SJunchao Zhang PetscInt *sdisp, *rdisp; 428f0e6e2d1SJunchao Zhang 4290e3ece09SJunchao Zhang PetscCall(PetscCommGetNewTag(comm, &tag)); 4300e3ece09SJunchao Zhang PetscCall(PetscSFGetLeafRanks(ownerSF, &niranks, &iranks, &ioffset, &irootloc)); // get leaf ranks connecting to roots on this process (I'll recv from them) 4310e3ece09SJunchao Zhang PetscCall(PetscSFGetRootRanks(ownerSF, &nranks, &ranks, &roffset, &rmine, NULL)); // get root ranks this process connects (I'll send to them) 432f0e6e2d1SJunchao Zhang 4330e3ece09SJunchao Zhang // Find out length of each row I will receive. Even for the same row index, when they are from 4340e3ece09SJunchao Zhang // different senders, they might have different lengths (and sparsity patterns) 4350e3ece09SJunchao Zhang PetscInt sendRowCnt = roffset[nranks], recvRowCnt = ioffset[niranks]; 4360e3ece09SJunchao Zhang PetscInt *sendRowLen, *recvRowLen; // lengths of rows of I need to send/recv per process 437f0e6e2d1SJunchao Zhang 4380e3ece09SJunchao Zhang PetscCall(PetscMalloc5(sendRowCnt, &sendRowLen, recvRowCnt + 1, &recvRowLen, nranks, &sdisp, niranks + 1, &rdisp, nranks + niranks, &reqs)); 4390e3ece09SJunchao Zhang 4400e3ece09SJunchao Zhang for (PetscInt i = 0; i < sendRowCnt; i++) sendRowLen[i] = E_RowLen[rmine[i]]; 4410e3ece09SJunchao Zhang recvRowLen[0] = 0; // since we will make it in CSR format later 4420e3ece09SJunchao Zhang recvRowLen++; // advance the pointer now 4436497c311SBarry Smith for (PetscInt i = 0; i < niranks; i++) MPI_Irecv(&recvRowLen[ioffset[i]], ioffset[i + 1] - ioffset[i], MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i]); 4446497c311SBarry Smith for (PetscInt i = 0; i < nranks; i++) MPIU_Isend(&sendRowLen[roffset[i]], roffset[i + 1] - roffset[i], MPIU_INT, ranks[i], tag, comm, &reqs[i]); 4450e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(nranks + niranks, reqs, MPI_STATUSES_IGNORE)); 4460e3ece09SJunchao Zhang 4470e3ece09SJunchao Zhang // Build the real PetscSF for reducing E rows (buffer to buffer) 4480e3ece09SJunchao Zhang rdisp[0] = 0; 4490e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { 4500e3ece09SJunchao Zhang rdisp[i + 1] = rdisp[i]; 4510e3ece09SJunchao Zhang for (PetscInt j = ioffset[i]; j < ioffset[i + 1]; j++) { rdisp[i + 1] += recvRowLen[j]; } 4520e3ece09SJunchao Zhang } 4530e3ece09SJunchao Zhang recvRowLen--; // put it back into csr format 4540e3ece09SJunchao Zhang for (PetscInt i = 0; i < recvRowCnt; i++) recvRowLen[i + 1] += recvRowLen[i]; 4550e3ece09SJunchao Zhang 4566497c311SBarry Smith for (PetscInt i = 0; i < nranks; i++) MPIU_Irecv(&sdisp[i], 1, MPIU_INT, ranks[i], tag, comm, &reqs[i]); 4576497c311SBarry Smith for (PetscInt i = 0; i < niranks; i++) MPIU_Isend(&rdisp[i], 1, MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i]); 4580e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(nranks + niranks, reqs, MPI_STATUSES_IGNORE)); 4590e3ece09SJunchao Zhang 4600e3ece09SJunchao Zhang PetscInt nleaves = 0, Enz = 0; // leaves are nonzeros I will send 4610e3ece09SJunchao Zhang PetscInt nroots = rdisp[niranks]; // roots are nonzeros I will recv 4620e3ece09SJunchao Zhang PetscSFNode *iremote; 4630e3ece09SJunchao Zhang 4640e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) Enz += E_RowLen[i]; 4650e3ece09SJunchao Zhang PetscAssert(A.nnz() + B.nnz() == Enz, comm, PETSC_ERR_PLIB, "Enz should be equal to sum of nnz of A and B"); 4660e3ece09SJunchao Zhang PetscCallMPI(PetscMalloc1(Enz, &iremote)); // no free, since we give ownership to reduceSF 4670e3ece09SJunchao Zhang 4680e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { 4690e3ece09SJunchao Zhang PetscInt count = 0; 4700e3ece09SJunchao Zhang for (PetscInt j = roffset[i]; j < roffset[i + 1]; j++) count += E_RowLen[rmine[j]]; 4710e3ece09SJunchao Zhang for (PetscInt j = 0; j < count; j++) { 4720e3ece09SJunchao Zhang iremote[nleaves + j].rank = ranks[i]; 4730e3ece09SJunchao Zhang iremote[nleaves + j].index = sdisp[i] + j; 4740e3ece09SJunchao Zhang } 4750e3ece09SJunchao Zhang nleaves += count; 4760e3ece09SJunchao Zhang } 4770e3ece09SJunchao Zhang PetscCheck(nleaves == Enz, comm, PETSC_ERR_PLIB, "nleaves should be equal to Enz"); 4780e3ece09SJunchao Zhang 4790e3ece09SJunchao Zhang PetscCall(PetscSFCreate(comm, &reduceSF)); 4800e3ece09SJunchao Zhang PetscCall(PetscSFSetGraph(reduceSF, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 4810e3ece09SJunchao Zhang 4820e3ece09SJunchao Zhang // Copy (global) column indices of the needed rows in E to sendCol[], and then PetscSFReduce to recvCol[] 4830e3ece09SJunchao Zhang PetscInt *sendCol, *recvCol; 4840e3ece09SJunchao Zhang PetscCall(PetscMalloc2(nleaves, &sendCol, nroots, &recvCol)); 4850e3ece09SJunchao Zhang for (PetscInt k = 0; k < roffset[nranks]; k++) { 4860e3ece09SJunchao Zhang PetscInt i = rmine[k]; // row to be copied 4870e3ece09SJunchao Zhang PetscInt *buf = &sendCol[Ai[i] + Bi[i]]; 4880e3ece09SJunchao Zhang PetscInt nzLeft = E_NzLeft[i]; 4890e3ece09SJunchao Zhang PetscInt alen = Ai[i + 1] - Ai[i], blen = Bi[i + 1] - Bi[i]; 4900e3ece09SJunchao Zhang for (PetscInt j = 0; j < alen + blen; j++) { 4910e3ece09SJunchao Zhang if (j < nzLeft) { 4920e3ece09SJunchao Zhang buf[j] = garray1[Bj[Bi[i] + j]]; // left B, in global 4930e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { 4940e3ece09SJunchao Zhang buf[j] = Aj[Ai[i] + j - nzLeft] + cstart; // diag A, also in global 4950e3ece09SJunchao Zhang } else { 4960e3ece09SJunchao Zhang buf[j] = garray1[Bj[Bi[i] + j - alen]]; // right B, in global 4970e3ece09SJunchao Zhang } 4980e3ece09SJunchao Zhang } 4990e3ece09SJunchao Zhang } 5000e3ece09SJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(reduceSF, MPIU_INT, PETSC_MEMTYPE_HOST, sendCol, PETSC_MEMTYPE_HOST, recvCol, MPI_REPLACE)); 5010e3ece09SJunchao Zhang PetscCall(PetscSFReduceEnd(reduceSF, MPIU_INT, sendCol, recvCol, MPI_REPLACE)); 5020e3ece09SJunchao Zhang 5030e3ece09SJunchao Zhang // With recvCol[], we do a series of analysis to get i, j of Fd, Fo, and build plans to reduce nonzeros in recv buffers to Fd and Fo 5040e3ece09SJunchao Zhang PetscInt *recvRowPerm, *recvColSorted; 5050e3ece09SJunchao Zhang PetscInt *recvNzPerm, *recvNzPermSorted; 5060e3ece09SJunchao Zhang PetscCall(PetscMalloc4(recvRowCnt, &recvRowPerm, nroots, &recvColSorted, nroots, &recvNzPerm, nroots, &recvNzPermSorted)); 5070e3ece09SJunchao Zhang 5080e3ece09SJunchao Zhang for (PetscInt i = 0; i < nroots; i++) recvNzPerm[i] = i; // numbering all received nonzeros 5090e3ece09SJunchao Zhang for (PetscInt i = 0; i < recvRowCnt; i++) recvRowPerm[i] = i; // put up a permutation array, so that after sorting we know where to get a row in recvCol[] 5100e3ece09SJunchao Zhang PetscCall(PetscSortIntWithPermutation(recvRowCnt, irootloc, recvRowPerm)); // irootloc[] (owned by ownerSF) won't be changed 5110e3ece09SJunchao Zhang 5120e3ece09SJunchao Zhang // i[] array, nz are always easiest to compute 5137b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdi_h(NoInit("Fdi_h"), Fm + 1), Foi_h(NoInit("Foi_h"), Fm + 1); 5140e3ece09SJunchao Zhang MatRowMapType *Fdi, *Foi; 5150e3ece09SJunchao Zhang PetscInt FnzDups = 0, Fdnz = 0, FdnzDups = 0, Fonz = 0, FonzDups = 0; // nz (with or without dups) in F, Fd, Fo 5160e3ece09SJunchao Zhang PetscInt iter; 5170e3ece09SJunchao Zhang 5180e3ece09SJunchao Zhang Kokkos::deep_copy(Fdi_h, 0); // zero, as we will do 'val++' on them 5190e3ece09SJunchao Zhang Kokkos::deep_copy(Foi_h, 0); 5200e3ece09SJunchao Zhang Fdi = Fdi_h.data() + 1; // +1 for easy indexing in code below 5210e3ece09SJunchao Zhang Foi = Foi_h.data() + 1; 5220e3ece09SJunchao Zhang iter = 0; 5230e3ece09SJunchao Zhang while (iter < recvRowCnt) { // iter over received rows 5240e3ece09SJunchao Zhang PetscInt curRowIdx = irootloc[recvRowPerm[iter]]; 5250e3ece09SJunchao Zhang PetscInt dupRows = 1; // current row has this many contributing rows (of various sparsity patterns) 5260e3ece09SJunchao Zhang 5270e3ece09SJunchao Zhang while (iter + dupRows < recvRowCnt && irootloc[recvRowPerm[iter + dupRows]] == curRowIdx) dupRows++; 5280e3ece09SJunchao Zhang 5290e3ece09SJunchao Zhang // Copy column indices (and their permutation) of these rows into recvColSorted & recvNzPermSorted 5300e3ece09SJunchao Zhang PetscInt nz = 0; // nz (with dups) in the current row 5310e3ece09SJunchao Zhang PetscInt *jbuf = recvColSorted + FnzDups; 5320e3ece09SJunchao Zhang PetscInt *pbuf = recvNzPermSorted + FnzDups; 5330e3ece09SJunchao Zhang PetscInt *jbuf2 = jbuf; // temp pointers 5340e3ece09SJunchao Zhang PetscInt *pbuf2 = pbuf; 5350e3ece09SJunchao Zhang for (PetscInt d = 0; d < dupRows; d++) { 5360e3ece09SJunchao Zhang PetscInt i = recvRowPerm[iter + d]; 5370e3ece09SJunchao Zhang PetscInt len = recvRowLen[i + 1] - recvRowLen[i]; 5380e3ece09SJunchao Zhang PetscCall(PetscArraycpy(jbuf2, &recvCol[recvRowLen[i]], len)); 5390e3ece09SJunchao Zhang PetscCall(PetscArraycpy(pbuf2, &recvNzPerm[recvRowLen[i]], len)); 5400e3ece09SJunchao Zhang jbuf2 += len; 5410e3ece09SJunchao Zhang pbuf2 += len; 5420e3ece09SJunchao Zhang nz += len; 5430e3ece09SJunchao Zhang } 5440e3ece09SJunchao Zhang PetscCall(PetscIntSortSemiOrderedWithArray(nz, jbuf, pbuf)); // It could be improved with k-way merge sort, since the rows are already sorted 5450e3ece09SJunchao Zhang 5460e3ece09SJunchao Zhang // Scan column indices (in jbuf[0,nz), might have dups) of this row, and see how many go to Fd and how many go to Fo 5470e3ece09SJunchao Zhang PetscInt cur = 0; 5480e3ece09SJunchao Zhang while (cur < nz) { 5490e3ece09SJunchao Zhang PetscInt curColIdx = jbuf[cur]; 5500e3ece09SJunchao Zhang PetscInt dups = 1; 5510e3ece09SJunchao Zhang 5520e3ece09SJunchao Zhang while (cur + dups < nz && jbuf[cur + dups] == curColIdx) dups++; 5530e3ece09SJunchao Zhang if (curColIdx >= cstart && curColIdx < cend) { 5540e3ece09SJunchao Zhang Fdi[curRowIdx]++; 5550e3ece09SJunchao Zhang FdnzDups += dups; 5560e3ece09SJunchao Zhang } else { 5570e3ece09SJunchao Zhang Foi[curRowIdx]++; 5580e3ece09SJunchao Zhang FonzDups += dups; 5590e3ece09SJunchao Zhang } 5600e3ece09SJunchao Zhang cur += dups; 5610e3ece09SJunchao Zhang } 5620e3ece09SJunchao Zhang 5630e3ece09SJunchao Zhang FnzDups += nz; 5640e3ece09SJunchao Zhang iter += dupRows; // Move to next unique row 5650e3ece09SJunchao Zhang } 5660e3ece09SJunchao Zhang 5670e3ece09SJunchao Zhang Fdi = Fdi_h.data(); // restore Fdi, Foi and make them CSR 5680e3ece09SJunchao Zhang Foi = Foi_h.data(); 5690e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 5700e3ece09SJunchao Zhang Fdi[i + 1] += Fdi[i]; 5710e3ece09SJunchao Zhang Foi[i + 1] += Foi[i]; 5720e3ece09SJunchao Zhang } 5730e3ece09SJunchao Zhang Fdnz = Fdi[Fm]; 5740e3ece09SJunchao Zhang Fonz = Foi[Fm]; 5750e3ece09SJunchao Zhang PetscCall(PetscFree2(sendCol, recvCol)); 5760e3ece09SJunchao Zhang 5770e3ece09SJunchao Zhang // Allocate j, jmap, jperm for Fd and Fo 5787b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost Fdj_h(NoInit("Fdj_h"), Fdnz), Foj_h(NoInit("Foj_h"), Fonz); 5797b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdjmap_h(NoInit("Fdjmap_h"), Fdnz + 1), Fojmap_h(NoInit("Fojmap_h"), Fonz + 1); // +1 to make csr 5807b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdjperm_h(NoInit("Fdjperm_h"), FdnzDups), Fojperm_h(NoInit("Fojperm_h"), FonzDups); 5810e3ece09SJunchao Zhang MatColIdxType *Fdj = Fdj_h.data(), *Foj = Foj_h.data(); 5820e3ece09SJunchao Zhang MatRowMapType *Fdjmap = Fdjmap_h.data(), *Fojmap = Fojmap_h.data(); 5830e3ece09SJunchao Zhang MatRowMapType *Fdjperm = Fdjperm_h.data(), *Fojperm = Fojperm_h.data(); 5840e3ece09SJunchao Zhang 5850e3ece09SJunchao Zhang // Scan recvColSorted[] again, and fill j, jmap, jperm for Fd and Fo 5860e3ece09SJunchao Zhang Fdjmap[0] = 0; 5870e3ece09SJunchao Zhang Fojmap[0] = 0; 5880e3ece09SJunchao Zhang FnzDups = 0; 5890e3ece09SJunchao Zhang Fdnz = 0; 5900e3ece09SJunchao Zhang Fonz = 0; 5910e3ece09SJunchao Zhang iter = 0; // iter over received rows 5920e3ece09SJunchao Zhang while (iter < recvRowCnt) { 5930e3ece09SJunchao Zhang PetscInt curRowIdx = irootloc[recvRowPerm[iter]]; // current row idx 5940e3ece09SJunchao Zhang PetscInt dupRows = 1; // It has this many contributing rows (of various lengths) 5950e3ece09SJunchao Zhang PetscInt nz = 0; // nz (with dups) in the current row 5960e3ece09SJunchao Zhang 5970e3ece09SJunchao Zhang while (iter + dupRows < recvRowCnt && irootloc[recvRowPerm[iter + dupRows]] == curRowIdx) dupRows++; 5980e3ece09SJunchao Zhang for (PetscInt d = 0; d < dupRows; d++) { 5990e3ece09SJunchao Zhang PetscInt i = recvRowPerm[iter + d]; 6000e3ece09SJunchao Zhang nz += recvRowLen[i + 1] - recvRowLen[i]; 6010e3ece09SJunchao Zhang } 6020e3ece09SJunchao Zhang 6030e3ece09SJunchao Zhang PetscInt *jbuf = recvColSorted + FnzDups; 6040e3ece09SJunchao Zhang // Scan columns (in jbuf[0,nz) of this row, copy them and their permutation to j[] and jperm[] of Fd and Fo 6050e3ece09SJunchao Zhang PetscInt cur = 0; 6060e3ece09SJunchao Zhang while (cur < nz) { 6070e3ece09SJunchao Zhang PetscInt curColIdx = jbuf[cur]; 6080e3ece09SJunchao Zhang PetscInt dups = 1; 6090e3ece09SJunchao Zhang 6100e3ece09SJunchao Zhang while (cur + dups < nz && jbuf[cur + dups] == curColIdx) dups++; 6110e3ece09SJunchao Zhang if (curColIdx >= cstart && curColIdx < cend) { 6120e3ece09SJunchao Zhang Fdj[Fdnz] = curColIdx - cstart; // easily convert to local 6130e3ece09SJunchao Zhang Fdjmap[Fdnz + 1] = Fdjmap[Fdnz] + dups; 6140e3ece09SJunchao Zhang for (PetscInt j = 0; j < dups; j++) Fdjperm[Fdjmap[Fdnz] + j] = recvNzPermSorted[FnzDups + j]; 6150e3ece09SJunchao Zhang FdnzDups += dups; 6160e3ece09SJunchao Zhang Fdnz++; 6170e3ece09SJunchao Zhang } else { 6180e3ece09SJunchao Zhang Foj[Fonz] = curColIdx; // in global 6190e3ece09SJunchao Zhang Fojmap[Fonz + 1] = Fojmap[Fonz] + dups; 6200e3ece09SJunchao Zhang for (PetscInt j = 0; j < dups; j++) Fojperm[Fojmap[Fonz] + j] = recvNzPermSorted[FnzDups + j]; 6210e3ece09SJunchao Zhang FonzDups += dups; 6220e3ece09SJunchao Zhang Fonz++; 6230e3ece09SJunchao Zhang } 6240e3ece09SJunchao Zhang cur += dups; 6250e3ece09SJunchao Zhang FnzDups += dups; 6260e3ece09SJunchao Zhang } 6270e3ece09SJunchao Zhang iter += dupRows; // Move to next unique row 6280e3ece09SJunchao Zhang } 6290e3ece09SJunchao Zhang PetscCall(PetscFree4(recvRowPerm, recvColSorted, recvNzPerm, recvNzPermSorted)); 6300e3ece09SJunchao Zhang PetscCall(PetscFree5(sendRowLen, recvRowLen, sdisp, rdisp, reqs)); 6310e3ece09SJunchao Zhang 6320e3ece09SJunchao Zhang // Combine global column indices in garray1[] and Foj[] 6330e3ece09SJunchao Zhang PetscInt n2, *garray2; 6340e3ece09SJunchao Zhang 6350e3ece09SJunchao Zhang PetscCall(ReduceTwoSetsOfGlobalIndices(n1, garray1, Fonz, Foj, &n2, &garray2, map)); 6360e3ece09SJunchao Zhang mm->sf = reduceSF; 6377b8d4ba6SJunchao Zhang mm->leafBuf = MatScalarKokkosView(NoInit("leafBuf"), nleaves); 6387b8d4ba6SJunchao Zhang mm->rootBuf = MatScalarKokkosView(NoInit("rootBuf"), nroots); 639aaa8cc7dSPierre Jolivet mm->garray = garray2; // give ownership, so no free 6400e3ece09SJunchao Zhang mm->n = n2; 6410e3ece09SJunchao Zhang mm->E_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), E_NzLeft_h); 6420e3ece09SJunchao Zhang mm->Fdjmap = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdjmap_h); 6430e3ece09SJunchao Zhang mm->Fdjperm = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdjperm_h); 6440e3ece09SJunchao Zhang mm->Fojmap = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fojmap_h); 6450e3ece09SJunchao Zhang mm->Fojperm = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fojperm_h); 6460e3ece09SJunchao Zhang 6470e3ece09SJunchao Zhang // Output Fd and Fo in KokkosCsrMatrix format 6487b8d4ba6SJunchao Zhang MatScalarKokkosView Fda_d(NoInit("Fda_d"), Fdnz); 6490e3ece09SJunchao Zhang MatRowMapKokkosView Fdi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdi_h); 6500e3ece09SJunchao Zhang MatColIdxKokkosView Fdj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdj_h); 6517b8d4ba6SJunchao Zhang MatScalarKokkosView Foa_d(NoInit("Foa_d"), Fonz); 6520e3ece09SJunchao Zhang MatRowMapKokkosView Foi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foi_h); 6530e3ece09SJunchao Zhang MatColIdxKokkosView Foj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foj_h); 6540e3ece09SJunchao Zhang 6550e3ece09SJunchao Zhang PetscCallCXX(mm->Fd = KokkosCsrMatrix("Fd", Fm, cend - cstart, Fdnz, Fda_d, Fdi_d, Fdj_d)); 6560e3ece09SJunchao Zhang PetscCallCXX(mm->Fo = KokkosCsrMatrix("Fo", Fm, n2, Fonz, Foa_d, Foi_d, Foj_d)); // Fo's column size is n2, length of garray2[] 6570e3ece09SJunchao Zhang 6580e3ece09SJunchao Zhang // Compute kernel launch parameters in merging E 6590e3ece09SJunchao Zhang PetscInt teamSize, vectorLength, rowsPerTeam; 6600e3ece09SJunchao Zhang 6610e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 6620e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(Em, Enz, -1, teamSize, vectorLength, rowsPerTeam)); 6630e3ece09SJunchao Zhang mm->E_TeamSize = teamSize; 6640e3ece09SJunchao Zhang mm->E_VectorLength = vectorLength; 6650e3ece09SJunchao Zhang mm->E_RowsPerTeam = rowsPerTeam; 6660e3ece09SJunchao Zhang } else PetscCheck(reuse == MAT_REUSE_MATRIX, comm, PETSC_ERR_PLIB, "Unsupported MatReuse enum %d", reuse); 6670e3ece09SJunchao Zhang 6680e3ece09SJunchao Zhang // Handy aliases 6690e3ece09SJunchao Zhang auto &Aa = A.values; 6700e3ece09SJunchao Zhang auto &Ba = B.values; 6710e3ece09SJunchao Zhang const auto &Ai = A.graph.row_map; 6720e3ece09SJunchao Zhang const auto &Bi = B.graph.row_map; 6730e3ece09SJunchao Zhang const auto &E_NzLeft = mm->E_NzLeft; 6740e3ece09SJunchao Zhang auto &leafBuf = mm->leafBuf; 6750e3ece09SJunchao Zhang auto &rootBuf = mm->rootBuf; 6760e3ece09SJunchao Zhang PetscSF reduceSF = mm->sf; 6770e3ece09SJunchao Zhang PetscInt Em = A.numRows(); 6780e3ece09SJunchao Zhang PetscInt teamSize = mm->E_TeamSize; 6790e3ece09SJunchao Zhang PetscInt vectorLength = mm->E_VectorLength; 6800e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->E_RowsPerTeam; 6810e3ece09SJunchao Zhang PetscInt workSets = (Em + rowsPerTeam - 1) / rowsPerTeam; 6820e3ece09SJunchao Zhang 6830e3ece09SJunchao Zhang // Copy rows in A/B of E to leafBuf, then pass it to rootBuf 6840e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 685d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(PetscGetKokkosExecutionSpace(), workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 6860e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 6870e3ece09SJunchao Zhang PetscInt i = t.league_rank() * rowsPerTeam + k; // i-th row in F 6880e3ece09SJunchao Zhang if (i < Em) { 6890e3ece09SJunchao Zhang PetscInt disp = Ai(i) + Bi(i); 6900e3ece09SJunchao Zhang PetscInt alen = Ai(i + 1) - Ai(i); 6910e3ece09SJunchao Zhang PetscInt blen = Bi(i + 1) - Bi(i); 6920e3ece09SJunchao Zhang PetscInt nzleft = E_NzLeft(i); 6930e3ece09SJunchao Zhang 6940e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 6950e3ece09SJunchao Zhang MatScalar &val = leafBuf(disp + j); 6960e3ece09SJunchao Zhang if (j < nzleft) { // B left 6970e3ece09SJunchao Zhang val = Ba(Bi(i) + j); 6980e3ece09SJunchao Zhang } else if (j < nzleft + alen) { // diag A 6990e3ece09SJunchao Zhang val = Aa(Ai(i) + j - nzleft); 7000e3ece09SJunchao Zhang } else { // B right 7010e3ece09SJunchao Zhang val = Ba(Bi(i) + j - alen); 702f0e6e2d1SJunchao Zhang } 703f0e6e2d1SJunchao Zhang }); 704f0e6e2d1SJunchao Zhang } 705f0e6e2d1SJunchao Zhang }); 7060e3ece09SJunchao Zhang })); 7070e3ece09SJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(reduceSF, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, leafBuf.data(), PETSC_MEMTYPE_KOKKOS, rootBuf.data(), MPI_REPLACE)); 708f0e6e2d1SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 709f0e6e2d1SJunchao Zhang } 7100e3ece09SJunchao Zhang 711aaa8cc7dSPierre Jolivet // To finish MatMPIAIJKokkosReduce. 7120e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosReduceEnd(MPI_Comm comm, KokkosCsrMatrix A, KokkosCsrMatrix B, PetscInt cstart, PetscInt cend, const PetscInt *garray1, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AtB *mm) 7130e3ece09SJunchao Zhang { 7140e3ece09SJunchao Zhang auto &leafBuf = mm->leafBuf; 7150e3ece09SJunchao Zhang auto &rootBuf = mm->rootBuf; 7160e3ece09SJunchao Zhang auto &Fda = mm->Fd.values; 7170e3ece09SJunchao Zhang const auto &Fdjmap = mm->Fdjmap; 7180e3ece09SJunchao Zhang const auto &Fdjperm = mm->Fdjperm; 7190e3ece09SJunchao Zhang auto Fdnz = mm->Fd.nnz(); 7200e3ece09SJunchao Zhang auto &Foa = mm->Fo.values; 7210e3ece09SJunchao Zhang const auto &Fojmap = mm->Fojmap; 7220e3ece09SJunchao Zhang const auto &Fojperm = mm->Fojperm; 7230e3ece09SJunchao Zhang auto Fonz = mm->Fo.nnz(); 7240e3ece09SJunchao Zhang PetscSF reduceSF = mm->sf; 7250e3ece09SJunchao Zhang 726d326c3f1SJunchao Zhang PetscFunctionBegin; 7270e3ece09SJunchao Zhang PetscCall(PetscSFReduceEnd(reduceSF, MPIU_SCALAR, leafBuf.data(), rootBuf.data(), MPI_REPLACE)); 7280e3ece09SJunchao Zhang 7290e3ece09SJunchao Zhang // Reduce data in rootBuf to Fd and Fo 7300e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 731d326c3f1SJunchao Zhang Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, Fdnz), KOKKOS_LAMBDA(const MatRowMapType i) { 7320e3ece09SJunchao Zhang PetscScalar sum = 0.0; 7330e3ece09SJunchao Zhang for (MatRowMapType k = Fdjmap(i); k < Fdjmap(i + 1); k++) sum += rootBuf(Fdjperm(k)); 7340e3ece09SJunchao Zhang Fda(i) = sum; 7350e3ece09SJunchao Zhang })); 7360e3ece09SJunchao Zhang 7370e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 738d326c3f1SJunchao Zhang Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, Fonz), KOKKOS_LAMBDA(const MatRowMapType i) { 7390e3ece09SJunchao Zhang PetscScalar sum = 0.0; 7400e3ece09SJunchao Zhang for (MatRowMapType k = Fojmap(i); k < Fojmap(i + 1); k++) sum += rootBuf(Fojperm(k)); 7410e3ece09SJunchao Zhang Foa(i) = sum; 7420e3ece09SJunchao Zhang })); 7430e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 7440e3ece09SJunchao Zhang } 7450e3ece09SJunchao Zhang 7460e3ece09SJunchao Zhang /* 7470e3ece09SJunchao Zhang MatMPIAIJKokkosBcast - Bcast local rows of a MPIAIJKOKKOS matrix (E) to produce a local matrix (F, stored in mm) in split form 7480e3ece09SJunchao Zhang 7490e3ece09SJunchao Zhang This is a complex routine. It is essentially the MPIAIJKOKKOS counterpart of MatGetBrowsOfAoCols_MPIAIJ, but supports 7500e3ece09SJunchao Zhang device and involves various index mapping. 7510e3ece09SJunchao Zhang 7520e3ece09SJunchao Zhang In the given ownerSF, leaves correspond to rows in F, and roots correspond to rows in E. Roots may connect to multiple leaves. 7530e3ece09SJunchao Zhang Suppose F's j-th row is connected to a root identified by PetscSFNode (k,i), it means we need to bcast the i-th row of E on rank k 7540e3ece09SJunchao Zhang to j-th row of F. ownerSF is not an arbitrary SF, instead it is the Mvctx of another MPIAIJ matrix A that is able to perform A*E. 7550e3ece09SJunchao Zhang F has the same column layout as E. 7560e3ece09SJunchao Zhang 7570e3ece09SJunchao Zhang Conceptually F has global column indices. In this routine, we spit F into diagonal Fd and off-diagonal Fo. 758aaa8cc7dSPierre Jolivet Fd uses local column indices, which are easy to compute. We just need to subtract the "local column range start" from the global indices. 7590e3ece09SJunchao Zhang Fo had global column indices at first. We will reduce them into local ones. In doing that, we also take into account the global 7600e3ece09SJunchao Zhang column indices that E's off-diag block has. Let's say there are n1 such indices stored in garray1[]. We will reduce them along with 7610e3ece09SJunchao Zhang column indices in Fo and update Fo with local indices. 7620e3ece09SJunchao Zhang 7630e3ece09SJunchao Zhang Input Parameters: 7640e3ece09SJunchao Zhang + E - the MPIAIJKOKKOS matrix 7659c89aa79SPierre Jolivet . ownerSF - the ownership SF (insignificant in MAT_REUSE_MATRIX) 7660e3ece09SJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 7670e3ece09SJunchao Zhang - mm - to stash matproduct intermediate data structures 7680e3ece09SJunchao Zhang 7690e3ece09SJunchao Zhang Output Parameters: 7700e3ece09SJunchao Zhang + map[n1] - allocated by caller. It maps garray1[] to garray2[]. See more at ReduceTwoSetsOfGlobalIndices. 7710e3ece09SJunchao Zhang - mm - contains various info, such as garray2[], Fd, Fo, etc. 7720e3ece09SJunchao Zhang 7730e3ece09SJunchao Zhang Notes: 7740e3ece09SJunchao Zhang When reuse = MAT_REUSE_MATRIX, ownerSF, map are not significant. 7750e3ece09SJunchao Zhang The routine is provide in split-phase form MatMPIAIJKokkosBcastBegin/End() to provide computation/communication opportunities. 7760e3ece09SJunchao Zhang */ 7770e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosBcastBegin(Mat E, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AB *mm) 7780e3ece09SJunchao Zhang { 7790e3ece09SJunchao Zhang Mat_MPIAIJ *empi = static_cast<Mat_MPIAIJ *>(E->data); 7800e3ece09SJunchao Zhang Mat A = empi->A, B = empi->B; // diag and off-diag 7810e3ece09SJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos *>(A->spptr), *bkok = static_cast<Mat_SeqAIJKokkos *>(B->spptr); 7820e3ece09SJunchao Zhang PetscInt Em = E->rmap->n; // #local rows 7830e3ece09SJunchao Zhang MPI_Comm comm; 7840e3ece09SJunchao Zhang 7850e3ece09SJunchao Zhang PetscFunctionBegin; 7860e3ece09SJunchao Zhang PetscCallMPI(PetscObjectGetComm((PetscObject)E, &comm)); 7870e3ece09SJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 7880e3ece09SJunchao Zhang Mat_SeqAIJ *aseq = static_cast<Mat_SeqAIJ *>(A->data), *bseq = static_cast<Mat_SeqAIJ *>(B->data); 7890e3ece09SJunchao Zhang PetscInt n1 = B->cmap->n, *Ai = aseq->i, *Aj = aseq->j, *Bi = bseq->i, *Bj = bseq->j; 7900e3ece09SJunchao Zhang const PetscInt *garray1 = empi->garray; // its size is n1 7910e3ece09SJunchao Zhang PetscInt cstart, cend; 7920e3ece09SJunchao Zhang PetscSF bcastSF; 7930e3ece09SJunchao Zhang 7940e3ece09SJunchao Zhang PetscCall(MatGetOwnershipRangeColumn(E, &cstart, &cend)); 7950e3ece09SJunchao Zhang 7960e3ece09SJunchao Zhang // Count how many nonzeros of each row in E are in the left of the diag block [cstart,cend) 7977b8d4ba6SJunchao Zhang PetscIntKokkosViewHost E_NzLeft_h(NoInit("E_NzLeft_h"), Em), E_RowLen_h(NoInit("E_RowLen_h"), Em); 7980e3ece09SJunchao Zhang PetscInt *E_NzLeft = E_NzLeft_h.data(), *E_RowLen = E_RowLen_h.data(); 7990e3ece09SJunchao Zhang for (PetscInt i = 0; i < Em; i++) { 8000e3ece09SJunchao Zhang const PetscInt *first, *last, *it; 8010e3ece09SJunchao Zhang PetscInt count, step; 8020e3ece09SJunchao Zhang // std::lower_bound(first,last,cstart), but need to use global column indices 8030e3ece09SJunchao Zhang first = Bj + Bi[i]; 8040e3ece09SJunchao Zhang last = Bj + Bi[i + 1]; 8050e3ece09SJunchao Zhang count = last - first; 8060e3ece09SJunchao Zhang while (count > 0) { 8070e3ece09SJunchao Zhang it = first; 8080e3ece09SJunchao Zhang step = count / 2; 8090e3ece09SJunchao Zhang it += step; 8100e3ece09SJunchao Zhang if (empi->garray[*it] < cstart) { // map local to global 8110e3ece09SJunchao Zhang first = ++it; 8120e3ece09SJunchao Zhang count -= step + 1; 8130e3ece09SJunchao Zhang } else count = step; 8140e3ece09SJunchao Zhang } 8150e3ece09SJunchao Zhang E_NzLeft[i] = first - (Bj + Bi[i]); 8160e3ece09SJunchao Zhang E_RowLen[i] = (Ai[i + 1] - Ai[i]) + (Bi[i + 1] - Bi[i]); 8170e3ece09SJunchao Zhang } 8180e3ece09SJunchao Zhang 8190e3ece09SJunchao Zhang // Compute row pointer Fi of F 8200e3ece09SJunchao Zhang PetscInt *Fi, Fm, Fnz; 8210e3ece09SJunchao Zhang PetscCall(PetscSFGetGraph(ownerSF, NULL, &Fm, NULL, NULL)); // Fm = #rows of F = nleaves of ownerSF 8220e3ece09SJunchao Zhang PetscCall(PetscMalloc1(Fm + 1, &Fi)); 8230e3ece09SJunchao Zhang Fi[0] = 0; 8240e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(ownerSF, MPIU_INT, PETSC_MEMTYPE_HOST, E_RowLen, PETSC_MEMTYPE_HOST, &Fi[1], MPI_REPLACE)); 8250e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(ownerSF, MPIU_INT, E_RowLen, &Fi[1], MPI_REPLACE)); 8260e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) Fi[i + 1] += Fi[i]; 8270e3ece09SJunchao Zhang Fnz = Fi[Fm]; 8280e3ece09SJunchao Zhang 8290e3ece09SJunchao Zhang // Build the real PetscSF for bcasting E rows (buffer to buffer) 8300e3ece09SJunchao Zhang const PetscMPIInt *iranks, *ranks; 8310e3ece09SJunchao Zhang const PetscInt *ioffset, *irootloc, *roffset; 832*c09cee04SJames Wright PetscMPIInt niranks, nranks; 833*c09cee04SJames Wright PetscInt *sdisp, *rdisp; 8340e3ece09SJunchao Zhang MPI_Request *reqs; 8350e3ece09SJunchao Zhang PetscMPIInt tag; 8360e3ece09SJunchao Zhang 8370e3ece09SJunchao Zhang PetscCall(PetscSFGetLeafRanks(ownerSF, &niranks, &iranks, &ioffset, &irootloc)); // get leaf ranks referencing roots on this process 8380e3ece09SJunchao Zhang PetscCall(PetscSFGetRootRanks(ownerSF, &nranks, &ranks, &roffset, NULL, NULL)); // recv info 8390e3ece09SJunchao Zhang PetscCall(PetscMalloc3(niranks + 1, &sdisp, nranks, &rdisp, niranks + nranks, &reqs)); 8400e3ece09SJunchao Zhang 8410e3ece09SJunchao Zhang sdisp[0] = 0; // send displacement 8420e3ece09SJunchao Zhang for (PetscInt i = 0; i < niranks; i++) { 8430e3ece09SJunchao Zhang sdisp[i + 1] = sdisp[i]; 8440e3ece09SJunchao Zhang for (PetscInt j = ioffset[i]; j < ioffset[i + 1]; j++) { 8450e3ece09SJunchao Zhang PetscInt r = irootloc[j]; // row to be sent 8460e3ece09SJunchao Zhang sdisp[i + 1] += E_RowLen[r]; 8470e3ece09SJunchao Zhang } 8480e3ece09SJunchao Zhang } 8490e3ece09SJunchao Zhang 8500e3ece09SJunchao Zhang PetscCallMPI(PetscCommGetNewTag(comm, &tag)); 8516497c311SBarry Smith for (PetscInt i = 0; i < nranks; i++) PetscCallMPI(MPIU_Irecv(&rdisp[i], 1, MPIU_INT, ranks[i], tag, comm, &reqs[i])); 8526497c311SBarry Smith for (PetscInt i = 0; i < niranks; i++) PetscCallMPI(MPIU_Isend(&sdisp[i], 1, MPIU_INT, iranks[i], tag, comm, &reqs[nranks + i])); 8530e3ece09SJunchao Zhang PetscCallMPI(MPI_Waitall(niranks + nranks, reqs, MPI_STATUSES_IGNORE)); 8540e3ece09SJunchao Zhang 8550e3ece09SJunchao Zhang PetscInt nleaves = Fnz; // leaves are nonzeros I will receive 8560e3ece09SJunchao Zhang PetscInt nroots = sdisp[niranks]; // roots are nonzeros I will send 8570e3ece09SJunchao Zhang PetscSFNode *iremote; // give ownership to bcastSF 8580e3ece09SJunchao Zhang PetscCall(PetscMalloc1(nleaves, &iremote)); 8590e3ece09SJunchao Zhang for (PetscInt i = 0; i < nranks; i++) { // for each sender rank 8600e3ece09SJunchao Zhang PetscInt k = 0; 8610e3ece09SJunchao Zhang for (PetscInt j = Fi[roffset[i]]; j < Fi[roffset[i + 1]]; j++) { // I will receive rows [roffset[i], roffset[i+1]) of F from ranks[i] 8620e3ece09SJunchao Zhang iremote[j].rank = ranks[i]; 8630e3ece09SJunchao Zhang iremote[j].index = rdisp[i] + k; // their root location 8640e3ece09SJunchao Zhang k++; 8650e3ece09SJunchao Zhang } 8660e3ece09SJunchao Zhang } 8670e3ece09SJunchao Zhang PetscCall(PetscSFCreate(comm, &bcastSF)); 8680e3ece09SJunchao Zhang PetscCall(PetscSFSetGraph(bcastSF, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 8690e3ece09SJunchao Zhang PetscCall(PetscFree3(sdisp, rdisp, reqs)); 8700e3ece09SJunchao Zhang 8710e3ece09SJunchao Zhang // Build a plan (rowoffset, irootloc, E_NzLeft) to copy rows in E to rootdata of bcastSF in parallel 8727b8d4ba6SJunchao Zhang PetscIntKokkosViewHost rowoffset_h(NoInit("rowoffset_h"), ioffset[niranks] + 1); 8730e3ece09SJunchao Zhang PetscInt *rowoffset = rowoffset_h.data(); // for each entry (row) indicated in irootloc[], we calculate its destinate offset in copying 8740e3ece09SJunchao Zhang rowoffset[0] = 0; 8757b8d4ba6SJunchao Zhang for (PetscInt i = 0; i < ioffset[niranks]; i++) { rowoffset[i + 1] = rowoffset[i] + E_RowLen[irootloc[i]]; } 8760e3ece09SJunchao Zhang 8770e3ece09SJunchao Zhang // Copy (global) column indices of the needed rows in E to a buffer, and then bcast to Fj[] 8780e3ece09SJunchao Zhang PetscInt *jbuf, *Fj; 8790e3ece09SJunchao Zhang PetscCall(PetscMalloc2(nroots, &jbuf, Fnz, &Fj)); 8800e3ece09SJunchao Zhang for (PetscInt k = 0; k < ioffset[niranks]; k++) { 8810e3ece09SJunchao Zhang PetscInt i = irootloc[k]; // row to be copied 8820e3ece09SJunchao Zhang PetscInt *buf = &jbuf[rowoffset[k]]; 8830e3ece09SJunchao Zhang PetscInt nzLeft = E_NzLeft[i]; 8840e3ece09SJunchao Zhang PetscInt alen = Ai[i + 1] - Ai[i], blen = Bi[i + 1] - Bi[i]; 8850e3ece09SJunchao Zhang for (PetscInt j = 0; j < alen + blen; j++) { 8860e3ece09SJunchao Zhang if (j < nzLeft) { 8870e3ece09SJunchao Zhang buf[j] = empi->garray[Bj[Bi[i] + j]]; // left B, in global 8880e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { 8890e3ece09SJunchao Zhang buf[j] = Aj[Ai[i] + j - nzLeft] + cstart; // diag A, also in global 8900e3ece09SJunchao Zhang } else { 8910e3ece09SJunchao Zhang buf[j] = empi->garray[Bj[Bi[i] + j - alen]]; // right B, in global 8920e3ece09SJunchao Zhang } 8930e3ece09SJunchao Zhang } 8940e3ece09SJunchao Zhang } 8950e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(bcastSF, MPIU_INT, PETSC_MEMTYPE_HOST, jbuf, PETSC_MEMTYPE_HOST, Fj, MPI_REPLACE)); 8960e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(bcastSF, MPIU_INT, jbuf, Fj, MPI_REPLACE)); 8970e3ece09SJunchao Zhang 8980e3ece09SJunchao Zhang // Build a plan (i.e., F_NzLeft) to split F into Fd and Fo 8997b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Fdi_h(NoInit("Fdi_h"), Fm + 1), Foi_h(NoInit("Foi_h"), Fm + 1); // row pointer of Fd, Fo 9007b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost F_NzLeft_h(NoInit("F_NzLeft_h"), Fm); // split each row of F into Left, Diag, Right. We only need to record #nz in Left and Diag. 9010e3ece09SJunchao Zhang MatRowMapType *Fdi = Fdi_h.data(), *Foi = Foi_h.data(); 9020e3ece09SJunchao Zhang MatColIdxType *F_NzLeft = F_NzLeft_h.data(); 9030e3ece09SJunchao Zhang 9040e3ece09SJunchao Zhang Fdi[0] = Foi[0] = 0; 9050e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9060e3ece09SJunchao Zhang PetscInt *first, *last, *lb1, *lb2; 9070e3ece09SJunchao Zhang // cut the row into: Left, [cstart, cend), Right 9080e3ece09SJunchao Zhang first = Fj + Fi[i]; 9090e3ece09SJunchao Zhang last = Fj + Fi[i + 1]; 9100e3ece09SJunchao Zhang lb1 = std::lower_bound(first, last, cstart); 9110e3ece09SJunchao Zhang F_NzLeft[i] = lb1 - first; 9120e3ece09SJunchao Zhang lb2 = std::lower_bound(first, last, cend); 9130e3ece09SJunchao Zhang Fdi[i + 1] = lb2 - lb1; // row i length in Fdi 9140e3ece09SJunchao Zhang Foi[i + 1] = (Fi[i + 1] - Fi[i]) - Fdi[i + 1]; // row i length in Foi 9150e3ece09SJunchao Zhang } 9160e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9170e3ece09SJunchao Zhang Fdi[i + 1] += Fdi[i]; 9180e3ece09SJunchao Zhang Foi[i + 1] += Foi[i]; 9190e3ece09SJunchao Zhang } 9200e3ece09SJunchao Zhang 9210e3ece09SJunchao Zhang // Fill Fdj[] and Foj[], i.e., columns of Fd and Fo. Fdj[] are local, but Foj[] are not yet. 9220e3ece09SJunchao Zhang PetscInt Fdnz = Fdi[Fm], Fonz = Foi[Fm]; 9237b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost Fdj_h(NoInit("Fdj_h"), Fdnz), Foj_h(NoInit("Foj_h"), Fonz); 9240e3ece09SJunchao Zhang MatColIdxType *Fdj = Fdj_h.data(), *Foj = Foj_h.data(), gid; 9250e3ece09SJunchao Zhang 9260e3ece09SJunchao Zhang for (PetscInt i = 0; i < Fm; i++) { 9270e3ece09SJunchao Zhang PetscInt nzLeft = F_NzLeft[i]; 9280e3ece09SJunchao Zhang PetscInt len = Fdi[i + 1] - Fdi[i]; // diag row len 9290e3ece09SJunchao Zhang for (PetscInt j = 0; j < Fi[i + 1] - Fi[i]; j++) { 9300e3ece09SJunchao Zhang gid = Fj[Fi[i] + j]; 9310e3ece09SJunchao Zhang if (j < nzLeft) { // left, in global 9320e3ece09SJunchao Zhang Foj[Foi[i] + j] = gid; 9330e3ece09SJunchao Zhang } else if (j < nzLeft + len) { // diag, in local 9340e3ece09SJunchao Zhang Fdj[Fdi[i] + j - nzLeft] = gid - cstart; 9350e3ece09SJunchao Zhang } else { // right, in global 9360e3ece09SJunchao Zhang Foj[Foi[i] + j - len] = gid; 9370e3ece09SJunchao Zhang } 9380e3ece09SJunchao Zhang } 9390e3ece09SJunchao Zhang } 9400e3ece09SJunchao Zhang PetscCall(PetscFree2(jbuf, Fj)); 9410e3ece09SJunchao Zhang PetscCall(PetscFree(Fi)); 9420e3ece09SJunchao Zhang 9430e3ece09SJunchao Zhang // Reduce global indices in Foj[] and garray1[] into local ones 9440e3ece09SJunchao Zhang PetscInt n2, *garray2; 9450e3ece09SJunchao Zhang PetscCall(ReduceTwoSetsOfGlobalIndices(n1, garray1, Fonz, Foj, &n2, &garray2, map)); 9460e3ece09SJunchao Zhang 9470e3ece09SJunchao Zhang // Record the plans built above, for reuse 9480e3ece09SJunchao Zhang PetscIntKokkosViewHost tmp(const_cast<PetscInt *>(irootloc), ioffset[niranks]); // irootloc[] is owned by ownerSF. We create a copy for safety 9497b8d4ba6SJunchao Zhang PetscIntKokkosViewHost irootloc_h(NoInit("irootloc_h"), ioffset[niranks]); 9500e3ece09SJunchao Zhang Kokkos::deep_copy(irootloc_h, tmp); 9510e3ece09SJunchao Zhang mm->sf = bcastSF; 9520e3ece09SJunchao Zhang mm->E_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), E_NzLeft_h); 9530e3ece09SJunchao Zhang mm->F_NzLeft = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), F_NzLeft_h); 9540e3ece09SJunchao Zhang mm->irootloc = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), irootloc_h); 9550e3ece09SJunchao Zhang mm->rowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), rowoffset_h); 9567b8d4ba6SJunchao Zhang mm->rootBuf = MatScalarKokkosView(NoInit("rootBuf"), nroots); 9577b8d4ba6SJunchao Zhang mm->leafBuf = MatScalarKokkosView(NoInit("leafBuf"), nleaves); 9580e3ece09SJunchao Zhang mm->garray = garray2; 9590e3ece09SJunchao Zhang mm->n = n2; 9600e3ece09SJunchao Zhang 9610e3ece09SJunchao Zhang // Output Fd and Fo in KokkosCsrMatrix format 9627b8d4ba6SJunchao Zhang MatScalarKokkosView Fda_d(NoInit("Fda_d"), Fdnz), Foa_d(NoInit("Foa_d"), Fonz); 9630e3ece09SJunchao Zhang MatRowMapKokkosView Fdi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdi_h); 9640e3ece09SJunchao Zhang MatColIdxKokkosView Fdj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Fdj_h); 9650e3ece09SJunchao Zhang MatRowMapKokkosView Foi_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foi_h); 9660e3ece09SJunchao Zhang MatColIdxKokkosView Foj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Foj_h); 9670e3ece09SJunchao Zhang 9680e3ece09SJunchao Zhang PetscCallCXX(mm->Fd = KokkosCsrMatrix("Fd", Fm, cend - cstart, Fdnz, Fda_d, Fdi_d, Fdj_d)); 9690e3ece09SJunchao Zhang PetscCallCXX(mm->Fo = KokkosCsrMatrix("Fo", Fm, n2, Fonz, Foa_d, Foi_d, Foj_d)); 9700e3ece09SJunchao Zhang 9710e3ece09SJunchao Zhang // Compute kernel launch parameters in merging E or splitting F 9720e3ece09SJunchao Zhang PetscInt teamSize, vectorLength, rowsPerTeam; 9730e3ece09SJunchao Zhang 9740e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 9750e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(mm->irootloc.extent(0), mm->rootBuf.extent(0), -1, teamSize, vectorLength, rowsPerTeam)); 9760e3ece09SJunchao Zhang mm->E_TeamSize = teamSize; 9770e3ece09SJunchao Zhang mm->E_VectorLength = vectorLength; 9780e3ece09SJunchao Zhang mm->E_RowsPerTeam = rowsPerTeam; 9790e3ece09SJunchao Zhang 9800e3ece09SJunchao Zhang teamSize = vectorLength = rowsPerTeam = -1; 9810e3ece09SJunchao Zhang PetscCall(MatMergeGetLaunchParameters<DefaultExecutionSpace>(Fm, Fnz, -1, teamSize, vectorLength, rowsPerTeam)); 9820e3ece09SJunchao Zhang mm->F_TeamSize = teamSize; 9830e3ece09SJunchao Zhang mm->F_VectorLength = vectorLength; 9840e3ece09SJunchao Zhang mm->F_RowsPerTeam = rowsPerTeam; 9850e3ece09SJunchao Zhang } else PetscCheck(reuse == MAT_REUSE_MATRIX, comm, PETSC_ERR_PLIB, "Unsupported MatReuse enum %d", reuse); 9860e3ece09SJunchao Zhang 9870e3ece09SJunchao Zhang // Sync E's value to device 9880e3ece09SJunchao Zhang akok->a_dual.sync_device(); 9890e3ece09SJunchao Zhang bkok->a_dual.sync_device(); 9900e3ece09SJunchao Zhang 9910e3ece09SJunchao Zhang // Handy aliases 9920e3ece09SJunchao Zhang const auto &Aa = akok->a_dual.view_device(); 9930e3ece09SJunchao Zhang const auto &Ba = bkok->a_dual.view_device(); 9940e3ece09SJunchao Zhang const auto &Ai = akok->i_dual.view_device(); 9950e3ece09SJunchao Zhang const auto &Bi = bkok->i_dual.view_device(); 9960e3ece09SJunchao Zhang 9970e3ece09SJunchao Zhang // Fetch the plans 9980e3ece09SJunchao Zhang PetscIntKokkosView &E_NzLeft = mm->E_NzLeft; 9990e3ece09SJunchao Zhang PetscSF &bcastSF = mm->sf; 10000e3ece09SJunchao Zhang MatScalarKokkosView &rootBuf = mm->rootBuf; 10010e3ece09SJunchao Zhang MatScalarKokkosView &leafBuf = mm->leafBuf; 10020e3ece09SJunchao Zhang PetscIntKokkosView &irootloc = mm->irootloc; 10030e3ece09SJunchao Zhang PetscIntKokkosView &rowoffset = mm->rowoffset; 10040e3ece09SJunchao Zhang 10050e3ece09SJunchao Zhang PetscInt teamSize = mm->E_TeamSize; 10060e3ece09SJunchao Zhang PetscInt vectorLength = mm->E_VectorLength; 10070e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->E_RowsPerTeam; 10080e3ece09SJunchao Zhang PetscInt workSets = (irootloc.extent(0) + rowsPerTeam - 1) / rowsPerTeam; 10090e3ece09SJunchao Zhang 10100e3ece09SJunchao Zhang // Copy rows in A/B of E to rootBuf, then bcast it to leafBuf 10110e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 1012d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(PetscGetKokkosExecutionSpace(), workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 10130e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 10140e3ece09SJunchao Zhang size_t r = t.league_rank() * rowsPerTeam + k; // r-th entry in irootloc[] 10150e3ece09SJunchao Zhang if (r < irootloc.extent(0)) { 10160e3ece09SJunchao Zhang PetscInt i = irootloc(r); // row i of E 10170e3ece09SJunchao Zhang PetscInt disp = rowoffset(r); 10180e3ece09SJunchao Zhang PetscInt alen = Ai(i + 1) - Ai(i); 10190e3ece09SJunchao Zhang PetscInt blen = Bi(i + 1) - Bi(i); 10200e3ece09SJunchao Zhang PetscInt nzleft = E_NzLeft(i); 10210e3ece09SJunchao Zhang 10220e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 10230e3ece09SJunchao Zhang if (j < nzleft) { // B left 10240e3ece09SJunchao Zhang rootBuf(disp + j) = Ba(Bi(i) + j); 10250e3ece09SJunchao Zhang } else if (j < nzleft + alen) { // diag A 10260e3ece09SJunchao Zhang rootBuf(disp + j) = Aa(Ai(i) + j - nzleft); 10270e3ece09SJunchao Zhang } else { // B right 10280e3ece09SJunchao Zhang rootBuf(disp + j) = Ba(Bi(i) + j - alen); 10290e3ece09SJunchao Zhang } 10300e3ece09SJunchao Zhang }); 10310e3ece09SJunchao Zhang } 10320e3ece09SJunchao Zhang }); 10330e3ece09SJunchao Zhang })); 10340e3ece09SJunchao Zhang PetscCall(PetscSFBcastWithMemTypeBegin(bcastSF, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, rootBuf.data(), PETSC_MEMTYPE_KOKKOS, leafBuf.data(), MPI_REPLACE)); 10350e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 10360e3ece09SJunchao Zhang } 10370e3ece09SJunchao Zhang 10380e3ece09SJunchao Zhang // To finish MatMPIAIJKokkosBcast. 10390e3ece09SJunchao Zhang static PetscErrorCode MatMPIAIJKokkosBcastEnd(Mat E, PetscSF ownerSF, MatReuse reuse, PetscInt *map, MatMatStruct_AB *mm) 10400e3ece09SJunchao Zhang { 10410e3ece09SJunchao Zhang PetscFunctionBegin; 10420e3ece09SJunchao Zhang const auto &Fd = mm->Fd; 10430e3ece09SJunchao Zhang const auto &Fo = mm->Fo; 10440e3ece09SJunchao Zhang const auto &Fdi = Fd.graph.row_map; 10450e3ece09SJunchao Zhang const auto &Foi = Fo.graph.row_map; 10460e3ece09SJunchao Zhang auto &Fda = Fd.values; 10470e3ece09SJunchao Zhang auto &Foa = Fo.values; 10480e3ece09SJunchao Zhang auto Fm = Fd.numRows(); 10490e3ece09SJunchao Zhang 10500e3ece09SJunchao Zhang PetscIntKokkosView &F_NzLeft = mm->F_NzLeft; 10510e3ece09SJunchao Zhang PetscSF &bcastSF = mm->sf; 10520e3ece09SJunchao Zhang MatScalarKokkosView &rootBuf = mm->rootBuf; 10530e3ece09SJunchao Zhang MatScalarKokkosView &leafBuf = mm->leafBuf; 10540e3ece09SJunchao Zhang PetscInt teamSize = mm->F_TeamSize; 10550e3ece09SJunchao Zhang PetscInt vectorLength = mm->F_VectorLength; 10560e3ece09SJunchao Zhang PetscInt rowsPerTeam = mm->F_RowsPerTeam; 10570e3ece09SJunchao Zhang PetscInt workSets = (Fm + rowsPerTeam - 1) / rowsPerTeam; 10580e3ece09SJunchao Zhang 10590e3ece09SJunchao Zhang PetscCall(PetscSFBcastEnd(bcastSF, MPIU_SCALAR, rootBuf.data(), leafBuf.data(), MPI_REPLACE)); 10600e3ece09SJunchao Zhang 10610e3ece09SJunchao Zhang // Update Fda and Foa with new data in leafBuf (as if it is Fa) 10620e3ece09SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 1063d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(PetscGetKokkosExecutionSpace(), workSets, teamSize, vectorLength), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 10640e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, 0, rowsPerTeam), [&](PetscInt k) { 10650e3ece09SJunchao Zhang PetscInt i = t.league_rank() * rowsPerTeam + k; // i-th row in F 10660e3ece09SJunchao Zhang if (i < Fm) { 10670e3ece09SJunchao Zhang PetscInt nzLeft = F_NzLeft(i); 10680e3ece09SJunchao Zhang PetscInt alen = Fdi(i + 1) - Fdi(i); 10690e3ece09SJunchao Zhang PetscInt blen = Foi(i + 1) - Foi(i); 10700e3ece09SJunchao Zhang PetscInt Fii = Fdi(i) + Foi(i); 10710e3ece09SJunchao Zhang 10720e3ece09SJunchao Zhang Kokkos::parallel_for(Kokkos::ThreadVectorRange(t, alen + blen), [&](PetscInt j) { 10730e3ece09SJunchao Zhang PetscScalar val = leafBuf(Fii + j); 10740e3ece09SJunchao Zhang if (j < nzLeft) { // left 10750e3ece09SJunchao Zhang Foa(Foi(i) + j) = val; 10760e3ece09SJunchao Zhang } else if (j < nzLeft + alen) { // diag 10770e3ece09SJunchao Zhang Fda(Fdi(i) + j - nzLeft) = val; 10780e3ece09SJunchao Zhang } else { // right 10790e3ece09SJunchao Zhang Foa(Foi(i) + j - alen) = val; 10800e3ece09SJunchao Zhang } 10810e3ece09SJunchao Zhang }); 10820e3ece09SJunchao Zhang } 10830e3ece09SJunchao Zhang }); 10840e3ece09SJunchao Zhang })); 10850e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 10860e3ece09SJunchao Zhang } 10870e3ece09SJunchao Zhang 10880e3ece09SJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AtB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AtB *mm) 10890e3ece09SJunchao Zhang { 10900e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 10910e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 10920e3ece09SJunchao Zhang KokkosCsrMatrix Adt, Aot, Ad, Ao, Bd, Bo; 10930e3ece09SJunchao Zhang PetscInt cstart, cend; 10940e3ece09SJunchao Zhang MPI_Comm comm; 10950e3ece09SJunchao Zhang 10960e3ece09SJunchao Zhang PetscFunctionBegin; 10970e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 10980e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->A, &Adt)); 10990e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->B, &Aot)); 11000e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 11010e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 11020e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 11030e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 11040e3ece09SJunchao Zhang 11050e3ece09SJunchao Zhang // TODO: add command line options to select spgemm algorithms 11060e3ece09SJunchao Zhang auto spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_DEFAULT; // default is TPL if enabled, otherwise KK 11070e3ece09SJunchao Zhang 11080e3ece09SJunchao Zhang // CUDA-10.2's spgemm has bugs. We prefer the SpGEMMreuse APIs introduced in cuda-11.4 11090e3ece09SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 11100e3ece09SJunchao Zhang #if PETSC_PKG_CUDA_VERSION_LT(11, 4, 0) 11110e3ece09SJunchao Zhang spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_KK; 1112f0e6e2d1SJunchao Zhang #endif 11130e3ece09SJunchao Zhang #endif 11140e3ece09SJunchao Zhang 11150e3ece09SJunchao Zhang PetscCallCXX(mm->kh1.create_spgemm_handle(spgemm_alg)); 11160e3ece09SJunchao Zhang PetscCallCXX(mm->kh2.create_spgemm_handle(spgemm_alg)); 11170e3ece09SJunchao Zhang PetscCallCXX(mm->kh3.create_spgemm_handle(spgemm_alg)); 11180e3ece09SJunchao Zhang PetscCallCXX(mm->kh4.create_spgemm_handle(spgemm_alg)); 11190e3ece09SJunchao Zhang 11200e3ece09SJunchao Zhang // Aot * (B's diag + B's off-diag) 11210e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh3, Aot, false, Bd, false, mm->C3)); 11220e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh4, Aot, false, Bo, false, mm->C4)); 11230e3ece09SJunchao Zhang // KK spgemm_symbolic() only populates the result's row map, but not its columns. 11240e3ece09SJunchao Zhang // TODO: Remove the fake spgemm_numeric() after KK fixed this problem. 11250e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Aot, false, Bd, false, mm->C3)); 11260e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Aot, false, Bo, false, mm->C4)); 11270e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 1128d326c3f1SJunchao Zhang 11290e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C3)); 11300e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C4)); 11310e3ece09SJunchao Zhang #endif 11320e3ece09SJunchao Zhang 11330e3ece09SJunchao Zhang // Reduce E (i.e., C3 and C4)'s rows to form F, and overlap the communication 11347b8d4ba6SJunchao Zhang PetscIntKokkosViewHost map_h(NoInit("map_h"), bmpi->B->cmap->n); 11350e3ece09SJunchao Zhang PetscCall(MatGetOwnershipRangeColumn(B, &cstart, &cend)); 11360e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceBegin(comm, mm->C3, mm->C4, cstart, cend, bmpi->garray, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 11370e3ece09SJunchao Zhang 11380e3ece09SJunchao Zhang // Adt * (B's diag + B's off-diag) 11390e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh1, Adt, false, Bd, false, mm->C1)); 11400e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 11410e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Adt, false, Bd, false, mm->C1)); 11420e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 11430e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 11440e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C1)); 11450e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C2_mid)); 11460e3ece09SJunchao Zhang #endif 11470e3ece09SJunchao Zhang 11480e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceEnd(comm, mm->C3, mm->C4, cstart, cend, bmpi->garray, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 11490e3ece09SJunchao Zhang 11500e3ece09SJunchao Zhang // Create C2, which shares a, i arrays with C2_mid, but with new column indices and potentially larger column size 11517b8d4ba6SJunchao Zhang MatColIdxKokkosView oldj = mm->C2_mid.graph.entries, newj(NoInit("j"), oldj.extent(0)); 11520e3ece09SJunchao Zhang PetscIntKokkosView map = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), map_h); 1153d326c3f1SJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, oldj.extent(0)), KOKKOS_LAMBDA(const PetscInt i) { newj(i) = map(oldj(i)); })); 11540e3ece09SJunchao Zhang PetscCallCXX(mm->C2 = KokkosCsrMatrix("C2", mm->C2_mid.numRows(), mm->n /*new column size*/, mm->C2_mid.nnz(), mm->C2_mid.values, mm->C2_mid.graph.row_map, newj)); 11550e3ece09SJunchao Zhang 11560e3ece09SJunchao Zhang // C = (C1+Fd, C2+Fo) 11570e3ece09SJunchao Zhang PetscCallCXX(mm->kh1.create_spadd_handle(true)); // C1, Fd are sorted 11580e3ece09SJunchao Zhang PetscCallCXX(mm->kh2.create_spadd_handle(true)); // C2, Fo are sorted 11590e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh1, mm->C1, mm->Fd, mm->Cd)); 11600e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh2, mm->C2, mm->Fo, mm->Co)); 11610e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->Fd, mm->Cd)); 11620e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->Fo, mm->Co)); 11630e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 11640e3ece09SJunchao Zhang } 11650e3ece09SJunchao Zhang 11660e3ece09SJunchao Zhang static PetscErrorCode MatProductNumeric_MPIAIJKokkos_AtB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AtB *mm) 11670e3ece09SJunchao Zhang { 11680e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 11690e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 11700e3ece09SJunchao Zhang KokkosCsrMatrix Adt, Aot, Bd, Bo; 11710e3ece09SJunchao Zhang MPI_Comm comm; 11720e3ece09SJunchao Zhang 11730e3ece09SJunchao Zhang PetscFunctionBegin; 11740e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)B, &comm)); 11750e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->A, &Adt)); 11760e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(ampi->B, &Aot)); 11770e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 11780e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 11790e3ece09SJunchao Zhang 11800e3ece09SJunchao Zhang // Aot * (B's diag + B's off-diag) 11810e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Aot, false, Bd, false, mm->C3)); 11820e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Aot, false, Bo, false, mm->C4)); 11830e3ece09SJunchao Zhang 11840e3ece09SJunchao Zhang // Reduce E (i.e., C3 and C4)'s rows to form F, and overlap the communication 11850e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceBegin(comm, mm->C3, mm->C4, 0, 0, NULL, NULL, MAT_REUSE_MATRIX, NULL, mm)); 11860e3ece09SJunchao Zhang 11870e3ece09SJunchao Zhang // Adt * (B's diag + B's off-diag) 11880e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Adt, false, Bd, false, mm->C1)); 11890e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Adt, false, Bo, false, mm->C2_mid)); 11900e3ece09SJunchao Zhang 11910e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosReduceEnd(comm, mm->C3, mm->C4, 0, 0, NULL, NULL, MAT_REUSE_MATRIX, NULL, mm)); 11920e3ece09SJunchao Zhang 11930e3ece09SJunchao Zhang // C = (C1+Fd, C2+Fo) 11940e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->Fd, mm->Cd)); 11950e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->Fo, mm->Co)); 11960e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 11970e3ece09SJunchao Zhang } 1198f0e6e2d1SJunchao Zhang 1199076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AB - AB flavor of MatProductSymbolic_MPIAIJKokkos 1200076ba34aSJunchao Zhang 1201076ba34aSJunchao Zhang Input Parameters: 1202076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 1203076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 1204076ba34aSJunchao Zhang . B - an MPIAIJKOKKOS matrix 1205076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data when computing AB. Persist from symbolic to numeric operations. 1206076ba34aSJunchao Zhang */ 1207d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AB *mm) 1208d71ae5a4SJacob Faibussowitsch { 12090e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 12100e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 12110e3ece09SJunchao Zhang KokkosCsrMatrix Ad, Ao, Bd, Bo; 1212076ba34aSJunchao Zhang 1213076ba34aSJunchao Zhang PetscFunctionBegin; 12140e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 12150e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 12160e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 12170e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 12180e3ece09SJunchao Zhang 12190e3ece09SJunchao Zhang // TODO: add command line options to select spgemm algorithms 12200e3ece09SJunchao Zhang auto spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_DEFAULT; // default is TPL if enabled, otherwise KK 12210e3ece09SJunchao Zhang 12220e3ece09SJunchao Zhang // CUDA-10.2's spgemm has bugs. We prefer the SpGEMMreuse APIs introduced in cuda-11.4 12230e3ece09SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 12240e3ece09SJunchao Zhang #if PETSC_PKG_CUDA_VERSION_LT(11, 4, 0) 12250e3ece09SJunchao Zhang spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_KK; 12260e3ece09SJunchao Zhang #endif 1227f0e6e2d1SJunchao Zhang #endif 1228f0e6e2d1SJunchao Zhang 12290e3ece09SJunchao Zhang mm->kh1.create_spgemm_handle(spgemm_alg); 12300e3ece09SJunchao Zhang mm->kh2.create_spgemm_handle(spgemm_alg); 12310e3ece09SJunchao Zhang mm->kh3.create_spgemm_handle(spgemm_alg); 12320e3ece09SJunchao Zhang mm->kh4.create_spgemm_handle(spgemm_alg); 1233076ba34aSJunchao Zhang 12340e3ece09SJunchao Zhang // Bcast B's rows to form F, and overlap the communication 12357b8d4ba6SJunchao Zhang PetscIntKokkosViewHost map_h(NoInit("map_h"), bmpi->B->cmap->n); 12360e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastBegin(B, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1237076ba34aSJunchao Zhang 12380e3ece09SJunchao Zhang // A's diag * (B's diag + B's off-diag) 12390e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh1, Ad, false, Bd, false, mm->C1)); 12400e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); // C2 aliases with C2_mid, except with new column indices 12410e3ece09SJunchao Zhang // KK spgemm_symbolic() only populates the result's row map, but not its columns. 12420e3ece09SJunchao Zhang // TODO: Remove the fake spgemm_numeric() after KK fixed this problem. 12430e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Ad, false, Bd, false, mm->C1)); 12440e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); 12450e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 12460e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C1)); 12470e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C2_mid)); 12480e3ece09SJunchao Zhang #endif 1249076ba34aSJunchao Zhang 12500e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastEnd(B, ampi->Mvctx, MAT_INITIAL_MATRIX, map_h.data(), mm)); 1251076ba34aSJunchao Zhang 12520e3ece09SJunchao Zhang // A's off-diag * (F's diag + F's off-diag) 12530e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 12540e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 12550e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 12560e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 12570e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 12580e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C3)); 12590e3ece09SJunchao Zhang PetscCallCXX(sort_crs_matrix(mm->C4)); 12600e3ece09SJunchao Zhang #endif 1261076ba34aSJunchao Zhang 12620e3ece09SJunchao Zhang // Create C2, which shares a, i arrays with C2_mid, but with new column indices and potentially larger column size 12637b8d4ba6SJunchao Zhang MatColIdxKokkosView oldj = mm->C2_mid.graph.entries, newj(NoInit("j"), oldj.extent(0)); 12640e3ece09SJunchao Zhang PetscIntKokkosView map = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), map_h); 1265d326c3f1SJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, oldj.extent(0)), KOKKOS_LAMBDA(const PetscInt i) { newj(i) = map(oldj(i)); })); 12660e3ece09SJunchao Zhang mm->C2 = KokkosCsrMatrix("C2", mm->C2_mid.numRows(), mm->n /*new column size*/, mm->C2_mid.nnz(), mm->C2_mid.values, mm->C2_mid.graph.row_map, newj); 12670e3ece09SJunchao Zhang 12680e3ece09SJunchao Zhang // C = (Cd, Co) = (C1+C3, C2+C4) 12690e3ece09SJunchao Zhang mm->kh1.create_spadd_handle(true); // C1, C3 are sorted 12700e3ece09SJunchao Zhang mm->kh2.create_spadd_handle(true); // C2, C4 are sorted 12710e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh1, mm->C1, mm->C3, mm->Cd)); 12720e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_symbolic(&mm->kh2, mm->C2, mm->C4, mm->Co)); 12730e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->C3, mm->Cd)); 12740e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->C4, mm->Co)); 12753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1276076ba34aSJunchao Zhang } 1277076ba34aSJunchao Zhang 12780e3ece09SJunchao Zhang static PetscErrorCode MatProductNumeric_MPIAIJKokkos_AB(Mat_Product *product, Mat A, Mat B, MatMatStruct_AB *mm) 1279d71ae5a4SJacob Faibussowitsch { 12800e3ece09SJunchao Zhang Mat_MPIAIJ *ampi = static_cast<Mat_MPIAIJ *>(A->data); 12810e3ece09SJunchao Zhang Mat_MPIAIJ *bmpi = static_cast<Mat_MPIAIJ *>(B->data); 12820e3ece09SJunchao Zhang KokkosCsrMatrix Ad, Ao, Bd, Bo; 1283076ba34aSJunchao Zhang 1284076ba34aSJunchao Zhang PetscFunctionBegin; 12850e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->A, &Ad)); 12860e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(ampi->B, &Ao)); 12870e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->A, &Bd)); 12880e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGetKokkosCsrMatrix(bmpi->B, &Bo)); 1289076ba34aSJunchao Zhang 12900e3ece09SJunchao Zhang // Bcast B's rows to form F, and overlap the communication 12910e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastBegin(B, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1292076ba34aSJunchao Zhang 12930e3ece09SJunchao Zhang // A's diag * (B's diag + B's off-diag) 12940e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh1, Ad, false, Bd, false, mm->C1)); 12950e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh2, Ad, false, Bo, false, mm->C2_mid)); 1296076ba34aSJunchao Zhang 12970e3ece09SJunchao Zhang PetscCall(MatMPIAIJKokkosBcastEnd(B, NULL, MAT_REUSE_MATRIX, NULL, mm)); 1298076ba34aSJunchao Zhang 12990e3ece09SJunchao Zhang // A's off-diag * (F's diag + F's off-diag) 13000e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh3, Ao, false, mm->Fd, false, mm->C3)); 13010e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(mm->kh4, Ao, false, mm->Fo, false, mm->C4)); 13020e3ece09SJunchao Zhang 13030e3ece09SJunchao Zhang // C = (Cd, Co) = (C1+C3, C2+C4) 13040e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh1, 1.0, mm->C1, 1.0, mm->C3, mm->Cd)); 13050e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spadd_numeric(&mm->kh2, 1.0, mm->C2, 1.0, mm->C4, mm->Co)); 13063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1307076ba34aSJunchao Zhang } 1308076ba34aSJunchao Zhang 130966976f2fSJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJKokkos(Mat C) 1310d71ae5a4SJacob Faibussowitsch { 13110e3ece09SJunchao Zhang Mat_MPIAIJ *cmpi = static_cast<Mat_MPIAIJ *>(C->data); 13120e3ece09SJunchao Zhang Mat_Product *product; 13130e3ece09SJunchao Zhang MatProductData_MPIAIJKokkos *pdata; 1314076ba34aSJunchao Zhang MatProductType ptype; 13150e3ece09SJunchao Zhang Mat A, B; 1316076ba34aSJunchao Zhang 1317076ba34aSJunchao Zhang PetscFunctionBegin; 13180e3ece09SJunchao Zhang MatCheckProduct(C, 1); // make sure C is a product 13190e3ece09SJunchao Zhang product = C->product; 13200e3ece09SJunchao Zhang pdata = static_cast<MatProductData_MPIAIJKokkos *>(product->data); 1321076ba34aSJunchao Zhang ptype = product->type; 1322076ba34aSJunchao Zhang A = product->A; 1323076ba34aSJunchao Zhang B = product->B; 1324076ba34aSJunchao Zhang 13250e3ece09SJunchao Zhang // See if numeric has already been done in symbolic (e.g., user calls MatMatMult(A,B,MAT_INITIAL_MATRIX,..,C)). 13260e3ece09SJunchao Zhang // If yes, skip the numeric, but reset the flag so that next time when user calls MatMatMult(E,F,MAT_REUSE_MATRIX,..,C), 13270e3ece09SJunchao Zhang // we still do numeric. 13280e3ece09SJunchao Zhang if (pdata->reusesym) { // numeric reuses results from symbolic 13290e3ece09SJunchao Zhang pdata->reusesym = PETSC_FALSE; 13303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1331076ba34aSJunchao Zhang } 1332076ba34aSJunchao Zhang 1333076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 13340e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AB(product, A, B, pdata->mmAB)); 1335076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 13360e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AtB(product, A, B, pdata->mmAtB)); 13370e3ece09SJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { // BtAB, computed by Z = AB; C= BtZ 13380e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AB(product, A, B, pdata->mmAB)); 13390e3ece09SJunchao Zhang PetscCall(MatProductNumeric_MPIAIJKokkos_AtB(product, B, pdata->Z, pdata->mmAtB)); 1340076ba34aSJunchao Zhang } 13410e3ece09SJunchao Zhang 13420e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(cmpi->A)); // mark that A, B on device are modified 13430e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(cmpi->B)); 13443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1345076ba34aSJunchao Zhang } 1346076ba34aSJunchao Zhang 134766976f2fSJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_MPIAIJKokkos(Mat C) 1348d71ae5a4SJacob Faibussowitsch { 1349076ba34aSJunchao Zhang Mat A, B; 13500e3ece09SJunchao Zhang Mat_Product *product; 1351076ba34aSJunchao Zhang MatProductType ptype; 13520e3ece09SJunchao Zhang MatProductData_MPIAIJKokkos *pdata; 1353076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 13540e3ece09SJunchao Zhang PetscInt m, n, M, N; 13550e3ece09SJunchao Zhang Mat Cd, Co; 13560e3ece09SJunchao Zhang MPI_Comm comm; 1357076ba34aSJunchao Zhang 1358076ba34aSJunchao Zhang PetscFunctionBegin; 13590e3ece09SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 1360076ba34aSJunchao Zhang MatCheckProduct(C, 1); 13610e3ece09SJunchao Zhang product = C->product; 13620e3ece09SJunchao Zhang PetscCheck(!product->data, comm, PETSC_ERR_PLIB, "Product data not empty"); 1363076ba34aSJunchao Zhang ptype = product->type; 1364076ba34aSJunchao Zhang A = product->A; 1365076ba34aSJunchao Zhang B = product->B; 1366076ba34aSJunchao Zhang 1367076ba34aSJunchao Zhang switch (ptype) { 13689371c9d4SSatish Balay case MATPRODUCT_AB: 13699371c9d4SSatish Balay m = A->rmap->n; 13709371c9d4SSatish Balay n = B->cmap->n; 13719371c9d4SSatish Balay M = A->rmap->N; 13729371c9d4SSatish Balay N = B->cmap->N; 13739371c9d4SSatish Balay break; 13749371c9d4SSatish Balay case MATPRODUCT_AtB: 13759371c9d4SSatish Balay m = A->cmap->n; 13769371c9d4SSatish Balay n = B->cmap->n; 13779371c9d4SSatish Balay M = A->cmap->N; 13789371c9d4SSatish Balay N = B->cmap->N; 13799371c9d4SSatish Balay break; 13809371c9d4SSatish Balay case MATPRODUCT_PtAP: 13819371c9d4SSatish Balay m = B->cmap->n; 13829371c9d4SSatish Balay n = B->cmap->n; 13839371c9d4SSatish Balay M = B->cmap->N; 13849371c9d4SSatish Balay N = B->cmap->N; 13859371c9d4SSatish Balay break; /* BtAB */ 1386d71ae5a4SJacob Faibussowitsch default: 13870e3ece09SJunchao Zhang SETERRQ(comm, PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 1388076ba34aSJunchao Zhang } 1389076ba34aSJunchao Zhang 13909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 13919566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 13929566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 13939566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 1394076ba34aSJunchao Zhang 13950e3ece09SJunchao Zhang pdata = new MatProductData_MPIAIJKokkos(); 13960e3ece09SJunchao Zhang pdata->reusesym = product->api_user; 1397076ba34aSJunchao Zhang 1398076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 13990e3ece09SJunchao Zhang auto mmAB = new MatMatStruct_AB(); 14000e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AB(product, A, B, mmAB)); 14010e3ece09SJunchao Zhang mm = pdata->mmAB = mmAB; 1402076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 14030e3ece09SJunchao Zhang auto mmAtB = new MatMatStruct_AtB(); 14040e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AtB(product, A, B, mmAtB)); 14050e3ece09SJunchao Zhang mm = pdata->mmAtB = mmAtB; 14060e3ece09SJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { // C = BtAB, computed as Z = AB; C= BtZ 14070e3ece09SJunchao Zhang Mat Zd, Zo, Z; // Zd, Zo are owned by pdata->Z 14080e3ece09SJunchao Zhang 14090e3ece09SJunchao Zhang auto mmAB = new MatMatStruct_AB(); 14100e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AB(product, A, B, mmAB)); // Z stored as mmAB->{Cd, Co} 14110e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mmAB->Cd, &Zd)); 14120e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mmAB->Co, &Zo)); 14130e3ece09SJunchao Zhang pdata->mmAB = mmAB; 14140e3ece09SJunchao Zhang 14150e3ece09SJunchao Zhang m = A->rmap->n; // Z's layout 14160e3ece09SJunchao Zhang n = B->cmap->n; 14170e3ece09SJunchao Zhang M = A->rmap->N; 14180e3ece09SJunchao Zhang N = B->cmap->N; 14190e3ece09SJunchao Zhang PetscCall(MatCreate(comm, &Z)); 14200e3ece09SJunchao Zhang PetscCall(MatSetSizes(Z, m, n, M, N)); 14210e3ece09SJunchao Zhang PetscCall(PetscLayoutSetUp(Z->rmap)); 14220e3ece09SJunchao Zhang PetscCall(PetscLayoutSetUp(Z->cmap)); 14230e3ece09SJunchao Zhang PetscCall(MatSetType(Z, MATMPIAIJKOKKOS)); 14240e3ece09SJunchao Zhang PetscCall(MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Z, Zd, Zo, mmAB->garray)); 14250e3ece09SJunchao Zhang 14260e3ece09SJunchao Zhang auto mmAtB = new MatMatStruct_AtB(); 14270e3ece09SJunchao Zhang PetscCall(MatProductSymbolic_MPIAIJKokkos_AtB(product, B, Z, mmAtB)); // final result C stored as mmAtB->{Cd, Co} 14280e3ece09SJunchao Zhang 14290e3ece09SJunchao Zhang pdata->Z = Z; // give ownership to pdata 14300e3ece09SJunchao Zhang mm = pdata->mmAtB = mmAtB; 1431076ba34aSJunchao Zhang } 14320e3ece09SJunchao Zhang 14330e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mm->Cd, &Cd)); 14340e3ece09SJunchao Zhang PetscCall(MatCreateSeqAIJKokkosWithKokkosCsrMatrix(PETSC_COMM_SELF, mm->Co, &Co)); 14350e3ece09SJunchao Zhang PetscCall(MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(C, Cd, Co, mm->garray)); 14360e3ece09SJunchao Zhang 14370e3ece09SJunchao Zhang C->product->data = pdata; 1438076ba34aSJunchao Zhang C->product->destroy = MatProductDataDestroy_MPIAIJKokkos; 1439076ba34aSJunchao Zhang C->ops->productnumeric = MatProductNumeric_MPIAIJKokkos; 14403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1441076ba34aSJunchao Zhang } 1442076ba34aSJunchao Zhang 1443d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJKokkos(Mat mat) 1444d71ae5a4SJacob Faibussowitsch { 1445076ba34aSJunchao Zhang Mat_Product *product = mat->product; 1446076ba34aSJunchao Zhang PetscBool match = PETSC_FALSE; 1447076ba34aSJunchao Zhang PetscBool usecpu = PETSC_FALSE; 1448076ba34aSJunchao Zhang 1449076ba34aSJunchao Zhang PetscFunctionBegin; 1450076ba34aSJunchao Zhang MatCheckProduct(mat, 1); 145148a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 1452076ba34aSJunchao Zhang if (match) { /* we can always fallback to the CPU if requested */ 1453076ba34aSJunchao Zhang switch (product->type) { 1454076ba34aSJunchao Zhang case MATPRODUCT_AB: 1455076ba34aSJunchao Zhang if (product->api_user) { 1456d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 14579566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 1458d0609cedSBarry Smith PetscOptionsEnd(); 1459076ba34aSJunchao Zhang } else { 1460d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 14619566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 1462d0609cedSBarry Smith PetscOptionsEnd(); 1463076ba34aSJunchao Zhang } 1464076ba34aSJunchao Zhang break; 1465076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1466076ba34aSJunchao Zhang if (product->api_user) { 1467d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 14689566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 1469d0609cedSBarry Smith PetscOptionsEnd(); 1470076ba34aSJunchao Zhang } else { 1471d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 14729566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 1473d0609cedSBarry Smith PetscOptionsEnd(); 1474076ba34aSJunchao Zhang } 1475076ba34aSJunchao Zhang break; 1476076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1477076ba34aSJunchao Zhang if (product->api_user) { 1478d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 14799566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 1480d0609cedSBarry Smith PetscOptionsEnd(); 1481076ba34aSJunchao Zhang } else { 1482d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 14839566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 1484d0609cedSBarry Smith PetscOptionsEnd(); 1485076ba34aSJunchao Zhang } 1486076ba34aSJunchao Zhang break; 1487d71ae5a4SJacob Faibussowitsch default: 1488d71ae5a4SJacob Faibussowitsch break; 1489076ba34aSJunchao Zhang } 1490076ba34aSJunchao Zhang match = (PetscBool)!usecpu; 1491076ba34aSJunchao Zhang } 1492076ba34aSJunchao Zhang if (match) { 1493076ba34aSJunchao Zhang switch (product->type) { 1494076ba34aSJunchao Zhang case MATPRODUCT_AB: 1495076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1496d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 1497d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJKokkos; 1498d71ae5a4SJacob Faibussowitsch break; 1499d71ae5a4SJacob Faibussowitsch default: 1500d71ae5a4SJacob Faibussowitsch break; 1501076ba34aSJunchao Zhang } 1502076ba34aSJunchao Zhang } 1503076ba34aSJunchao Zhang /* fallback to MPIAIJ ops */ 150448a46eb9SPierre Jolivet if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 15053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1506076ba34aSJunchao Zhang } 1507076ba34aSJunchao Zhang 15082c4ab24aSJunchao Zhang // Mirror of MatCOOStruct_MPIAIJ on device 15092c4ab24aSJunchao Zhang struct MatCOOStruct_MPIAIJKokkos { 15102c4ab24aSJunchao Zhang PetscCount n; 15112c4ab24aSJunchao Zhang PetscSF sf; 15122c4ab24aSJunchao Zhang PetscCount Annz, Bnnz; 15132c4ab24aSJunchao Zhang PetscCount Annz2, Bnnz2; 15142c4ab24aSJunchao Zhang PetscCountKokkosView Ajmap1, Aperm1; 15152c4ab24aSJunchao Zhang PetscCountKokkosView Bjmap1, Bperm1; 15162c4ab24aSJunchao Zhang PetscCountKokkosView Aimap2, Ajmap2, Aperm2; 15172c4ab24aSJunchao Zhang PetscCountKokkosView Bimap2, Bjmap2, Bperm2; 15182c4ab24aSJunchao Zhang PetscCountKokkosView Cperm1; 15192c4ab24aSJunchao Zhang MatScalarKokkosView sendbuf, recvbuf; 15202c4ab24aSJunchao Zhang 152192896123SJunchao Zhang MatCOOStruct_MPIAIJKokkos(const MatCOOStruct_MPIAIJ *coo_h) 15222c4ab24aSJunchao Zhang { 152392896123SJunchao Zhang auto &exec = PetscGetKokkosExecutionSpace(); 152492896123SJunchao Zhang 152592896123SJunchao Zhang n = coo_h->n; 152692896123SJunchao Zhang sf = coo_h->sf; 152792896123SJunchao Zhang Annz = coo_h->Annz; 152892896123SJunchao Zhang Bnnz = coo_h->Bnnz; 152992896123SJunchao Zhang Annz2 = coo_h->Annz2; 153092896123SJunchao Zhang Bnnz2 = coo_h->Bnnz2; 153192896123SJunchao Zhang Ajmap1 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Ajmap1, coo_h->Annz + 1)); 153292896123SJunchao Zhang Aperm1 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Aperm1, coo_h->Atot1)); 153392896123SJunchao Zhang Bjmap1 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Bjmap1, coo_h->Bnnz + 1)); 153492896123SJunchao Zhang Bperm1 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Bperm1, coo_h->Btot1)); 153592896123SJunchao Zhang Aimap2 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Aimap2, coo_h->Annz2)); 153692896123SJunchao Zhang Ajmap2 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Ajmap2, coo_h->Annz2 + 1)); 153792896123SJunchao Zhang Aperm2 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Aperm2, coo_h->Atot2)); 153892896123SJunchao Zhang Bimap2 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Bimap2, coo_h->Bnnz2)); 153992896123SJunchao Zhang Bjmap2 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Bjmap2, coo_h->Bnnz2 + 1)); 154092896123SJunchao Zhang Bperm2 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Bperm2, coo_h->Btot2)); 154192896123SJunchao Zhang Cperm1 = Kokkos::create_mirror_view_and_copy(exec, PetscCountKokkosViewHost(coo_h->Cperm1, coo_h->sendlen)); 154292896123SJunchao Zhang sendbuf = Kokkos::create_mirror_view(Kokkos::WithoutInitializing, exec, MatScalarKokkosViewHost(coo_h->sendbuf, coo_h->sendlen)); 154392896123SJunchao Zhang recvbuf = Kokkos::create_mirror_view(Kokkos::WithoutInitializing, exec, MatScalarKokkosViewHost(coo_h->recvbuf, coo_h->recvlen)); 15442c4ab24aSJunchao Zhang PetscCallVoid(PetscObjectReference((PetscObject)sf)); 15452c4ab24aSJunchao Zhang } 15462c4ab24aSJunchao Zhang 15472c4ab24aSJunchao Zhang ~MatCOOStruct_MPIAIJKokkos() { PetscCallVoid(PetscSFDestroy(&sf)); } 15482c4ab24aSJunchao Zhang }; 15492c4ab24aSJunchao Zhang 15502c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJKokkos(void *data) 15512c4ab24aSJunchao Zhang { 15522c4ab24aSJunchao Zhang PetscFunctionBegin; 15532c4ab24aSJunchao Zhang PetscCallCXX(delete static_cast<MatCOOStruct_MPIAIJKokkos *>(data)); 15542c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 15552c4ab24aSJunchao Zhang } 15562c4ab24aSJunchao Zhang 1557d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetPreallocationCOO_MPIAIJKokkos(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 1558d71ae5a4SJacob Faibussowitsch { 15592c4ab24aSJunchao Zhang PetscContainer container_h, container_d; 15602c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo_h; 15612c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJKokkos *coo_d; 156242550becSJunchao Zhang 156342550becSJunchao Zhang PetscFunctionBegin; 156430203840SJunchao Zhang PetscCall(MatSetPreallocationCOO_MPIAIJ(mat, coo_n, coo_i, coo_j)); /* mpiaij->A,B's type is set to seqaijkokkos */ 1565cbc6b225SStefano Zampini mat->preallocated = PETSC_TRUE; 15669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 15679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 15689566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(mat)); 15692c4ab24aSJunchao Zhang 15702c4ab24aSJunchao Zhang // Copy the COO struct to device 15712c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container_h)); 15722c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container_h, (void **)&coo_h)); 15732c4ab24aSJunchao Zhang PetscCallCXX(coo_d = new MatCOOStruct_MPIAIJKokkos(coo_h)); 15742c4ab24aSJunchao Zhang 15752c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 15762c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container_d)); 15772c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container_d, coo_d)); 15782c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container_d, MatCOOStructDestroy_MPIAIJKokkos)); 15792c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Device", (PetscObject)container_d)); 15802c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container_d)); 15813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 158242550becSJunchao Zhang } 158342550becSJunchao Zhang 1584d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJKokkos(Mat mat, const PetscScalar v[], InsertMode imode) 1585d71ae5a4SJacob Faibussowitsch { 1586394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(mat->data); 158742550becSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 158842550becSJunchao Zhang MatScalarKokkosView Aa, Ba; 1589394ed5ebSJunchao Zhang MatScalarKokkosView v1; 159042550becSJunchao Zhang PetscMemType memtype; 15912c4ab24aSJunchao Zhang PetscContainer container; 15922c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJKokkos *coo; 159392896123SJunchao Zhang Kokkos::DefaultExecutionSpace &exec = PetscGetKokkosExecutionSpace(); 159442550becSJunchao Zhang 159542550becSJunchao Zhang PetscFunctionBegin; 15962c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Device", (PetscObject *)&container)); 15972c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 15982c4ab24aSJunchao Zhang 15992c4ab24aSJunchao Zhang const auto &n = coo->n; 16002c4ab24aSJunchao Zhang const auto &Annz = coo->Annz; 16012c4ab24aSJunchao Zhang const auto &Annz2 = coo->Annz2; 16022c4ab24aSJunchao Zhang const auto &Bnnz = coo->Bnnz; 16032c4ab24aSJunchao Zhang const auto &Bnnz2 = coo->Bnnz2; 16042c4ab24aSJunchao Zhang const auto &vsend = coo->sendbuf; 16052c4ab24aSJunchao Zhang const auto &v2 = coo->recvbuf; 16062c4ab24aSJunchao Zhang const auto &Ajmap1 = coo->Ajmap1; 16072c4ab24aSJunchao Zhang const auto &Ajmap2 = coo->Ajmap2; 16082c4ab24aSJunchao Zhang const auto &Aimap2 = coo->Aimap2; 16092c4ab24aSJunchao Zhang const auto &Bjmap1 = coo->Bjmap1; 16102c4ab24aSJunchao Zhang const auto &Bjmap2 = coo->Bjmap2; 16112c4ab24aSJunchao Zhang const auto &Bimap2 = coo->Bimap2; 16122c4ab24aSJunchao Zhang const auto &Aperm1 = coo->Aperm1; 16132c4ab24aSJunchao Zhang const auto &Aperm2 = coo->Aperm2; 16142c4ab24aSJunchao Zhang const auto &Bperm1 = coo->Bperm1; 16152c4ab24aSJunchao Zhang const auto &Bperm2 = coo->Bperm2; 16162c4ab24aSJunchao Zhang const auto &Cperm1 = coo->Cperm1; 16172c4ab24aSJunchao Zhang 16189566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(v, &memtype)); /* Return PETSC_MEMTYPE_HOST when v is NULL */ 161942550becSJunchao Zhang if (PetscMemTypeHost(memtype)) { /* If user gave v[] in host, we need to copy it to device if any */ 162092896123SJunchao Zhang v1 = Kokkos::create_mirror_view_and_copy(exec, MatScalarKokkosViewHost((PetscScalar *)v, n)); 162142550becSJunchao Zhang } else { 16222c4ab24aSJunchao Zhang v1 = MatScalarKokkosView((PetscScalar *)v, n); /* Directly use v[]'s memory */ 162342550becSJunchao Zhang } 162442550becSJunchao Zhang 162542550becSJunchao Zhang if (imode == INSERT_VALUES) { 16269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosViewWrite(A, &Aa)); /* write matrix values */ 16279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosViewWrite(B, &Ba)); 1628394ed5ebSJunchao Zhang } else { 16299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosView(A, &Aa)); /* read & write matrix values */ 16309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetKokkosView(B, &Ba)); 163142550becSJunchao Zhang } 163242550becSJunchao Zhang 163308bb9926SJunchao Zhang PetscCall(PetscLogGpuTimeBegin()); 163442550becSJunchao Zhang /* Pack entries to be sent to remote */ 163592896123SJunchao Zhang Kokkos::parallel_for(Kokkos::RangePolicy<>(exec, 0, vsend.extent(0)), KOKKOS_LAMBDA(const PetscCount i) { vsend(i) = v1(Cperm1(i)); }); 163642550becSJunchao Zhang 163742550becSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 16382c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_KOKKOS, vsend.data(), PETSC_MEMTYPE_KOKKOS, v2.data(), MPI_REPLACE)); 1639158ec288SJunchao Zhang /* Add local entries to A and B in one kernel */ 16409371c9d4SSatish Balay Kokkos::parallel_for( 164192896123SJunchao Zhang Kokkos::RangePolicy<>(exec, 0, Annz + Bnnz), KOKKOS_LAMBDA(PetscCount i) { 1642158ec288SJunchao Zhang PetscScalar sum = 0.0; 1643158ec288SJunchao Zhang if (i < Annz) { 1644158ec288SJunchao Zhang for (PetscCount k = Ajmap1(i); k < Ajmap1(i + 1); k++) sum += v1(Aperm1(k)); 1645ac38520cSJunchao Zhang Aa(i) = (imode == INSERT_VALUES ? 0.0 : Aa(i)) + sum; 1646158ec288SJunchao Zhang } else { 1647158ec288SJunchao Zhang i -= Annz; 1648158ec288SJunchao Zhang for (PetscCount k = Bjmap1(i); k < Bjmap1(i + 1); k++) sum += v1(Bperm1(k)); 1649ac38520cSJunchao Zhang Ba(i) = (imode == INSERT_VALUES ? 0.0 : Ba(i)) + sum; 1650158ec288SJunchao Zhang } 1651158ec288SJunchao Zhang }); 16522c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, vsend.data(), v2.data(), MPI_REPLACE)); 165342550becSJunchao Zhang 1654158ec288SJunchao Zhang /* Add received remote entries to A and B in one kernel */ 16559371c9d4SSatish Balay Kokkos::parallel_for( 165692896123SJunchao Zhang Kokkos::RangePolicy<>(exec, 0, Annz2 + Bnnz2), KOKKOS_LAMBDA(PetscCount i) { 1657158ec288SJunchao Zhang if (i < Annz2) { 1658158ec288SJunchao Zhang for (PetscCount k = Ajmap2(i); k < Ajmap2(i + 1); k++) Aa(Aimap2(i)) += v2(Aperm2(k)); 1659158ec288SJunchao Zhang } else { 1660158ec288SJunchao Zhang i -= Annz2; 1661158ec288SJunchao Zhang for (PetscCount k = Bjmap2(i); k < Bjmap2(i + 1); k++) Ba(Bimap2(i)) += v2(Bperm2(k)); 1662158ec288SJunchao Zhang } 1663158ec288SJunchao Zhang }); 166408bb9926SJunchao Zhang PetscCall(PetscLogGpuTimeEnd()); 166542550becSJunchao Zhang 1666394ed5ebSJunchao Zhang if (imode == INSERT_VALUES) { 16679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosViewWrite(A, &Aa)); /* Increase A & B's state etc. */ 16689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosViewWrite(B, &Ba)); 1669394ed5ebSJunchao Zhang } else { 16709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosView(A, &Aa)); 16719566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreKokkosView(B, &Ba)); 1672394ed5ebSJunchao Zhang } 16733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 167442550becSJunchao Zhang } 167542550becSJunchao Zhang 16762c4ab24aSJunchao Zhang static PetscErrorCode MatDestroy_MPIAIJKokkos(Mat A) 1677d71ae5a4SJacob Faibussowitsch { 1678076ba34aSJunchao Zhang PetscFunctionBegin; 16799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatMPIAIJSetPreallocation_C", NULL)); 16809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", NULL)); 16819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetPreallocationCOO_C", NULL)); 16829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetValuesCOO_C", NULL)); 16839566063dSJacob Faibussowitsch PetscCall(MatDestroy_MPIAIJ(A)); 16843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1685076ba34aSJunchao Zhang } 1686076ba34aSJunchao Zhang 1687f4747e26SJunchao Zhang static PetscErrorCode MatShift_MPIAIJKokkos(Mat A, PetscScalar a) 1688f4747e26SJunchao Zhang { 1689f4747e26SJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ *>(A->data); 1690f4747e26SJunchao Zhang PetscBool congruent; 1691f4747e26SJunchao Zhang 1692f4747e26SJunchao Zhang PetscFunctionBegin; 1693f4747e26SJunchao Zhang PetscCall(MatHasCongruentLayouts(A, &congruent)); 1694f4747e26SJunchao Zhang if (congruent) { // square matrix and the diagonals are solely in the diag block 1695f4747e26SJunchao Zhang PetscCall(MatShift(mpiaij->A, a)); 1696f4747e26SJunchao Zhang } else { // too hard, use the general version 1697f4747e26SJunchao Zhang PetscCall(MatShift_Basic(A, a)); 1698f4747e26SJunchao Zhang } 1699f4747e26SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 1700f4747e26SJunchao Zhang } 1701f4747e26SJunchao Zhang 17022c4ab24aSJunchao Zhang static PetscErrorCode MatSetOps_MPIAIJKokkos(Mat B) 17032c4ab24aSJunchao Zhang { 17042c4ab24aSJunchao Zhang PetscFunctionBegin; 17052c4ab24aSJunchao Zhang B->ops->assemblyend = MatAssemblyEnd_MPIAIJKokkos; 17062c4ab24aSJunchao Zhang B->ops->mult = MatMult_MPIAIJKokkos; 17072c4ab24aSJunchao Zhang B->ops->multadd = MatMultAdd_MPIAIJKokkos; 17082c4ab24aSJunchao Zhang B->ops->multtranspose = MatMultTranspose_MPIAIJKokkos; 17092c4ab24aSJunchao Zhang B->ops->productsetfromoptions = MatProductSetFromOptions_MPIAIJKokkos; 17102c4ab24aSJunchao Zhang B->ops->destroy = MatDestroy_MPIAIJKokkos; 1711f4747e26SJunchao Zhang B->ops->shift = MatShift_MPIAIJKokkos; 17122c4ab24aSJunchao Zhang 17132c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJKokkos)); 17142c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJGetLocalMatMerge_C", MatMPIAIJGetLocalMatMerge_MPIAIJKokkos)); 17152c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJKokkos)); 17162c4ab24aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJKokkos)); 17172c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 17182c4ab24aSJunchao Zhang } 17192c4ab24aSJunchao Zhang 1720d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat A, MatType mtype, MatReuse reuse, Mat *newmat) 1721d71ae5a4SJacob Faibussowitsch { 17228c3ff71bSJunchao Zhang Mat B; 1723076ba34aSJunchao Zhang Mat_MPIAIJ *a; 17248c3ff71bSJunchao Zhang 17258c3ff71bSJunchao Zhang PetscFunctionBegin; 17268c3ff71bSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 17279566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, newmat)); 17288c3ff71bSJunchao Zhang } else if (reuse == MAT_REUSE_MATRIX) { 17299566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *newmat, SAME_NONZERO_PATTERN)); 17308c3ff71bSJunchao Zhang } 17318c3ff71bSJunchao Zhang B = *newmat; 17328c3ff71bSJunchao Zhang 17336f3d89d0SStefano Zampini B->boundtocpu = PETSC_FALSE; 17349566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 17359566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECKOKKOS, &B->defaultvectype)); 17369566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJKOKKOS)); 17378c3ff71bSJunchao Zhang 1738076ba34aSJunchao Zhang a = static_cast<Mat_MPIAIJ *>(A->data); 17399566063dSJacob Faibussowitsch if (a->A) PetscCall(MatSetType(a->A, MATSEQAIJKOKKOS)); 17409566063dSJacob Faibussowitsch if (a->B) PetscCall(MatSetType(a->B, MATSEQAIJKOKKOS)); 17419566063dSJacob Faibussowitsch if (a->lvec) PetscCall(VecSetType(a->lvec, VECSEQKOKKOS)); 17422c4ab24aSJunchao Zhang PetscCall(MatSetOps_MPIAIJKokkos(B)); 17433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17448c3ff71bSJunchao Zhang } 17452c4ab24aSJunchao Zhang 17463f3ba80aSJunchao Zhang /*MC 174711a5261eSBarry Smith MATAIJKOKKOS - "mpiaijkokkos", a matrix type to be used for CSR sparse matrices with Kokkos 17488c3ff71bSJunchao Zhang 174915229ffcSPierre Jolivet A matrix type using Kokkos-Kernels CrsMatrix type for portability across different device types 17503f3ba80aSJunchao Zhang 17512ef1f0ffSBarry Smith Options Database Key: 17522ef1f0ffSBarry Smith . -mat_type aijkokkos - sets the matrix type to `MATAIJKOKKOS` 17533f3ba80aSJunchao Zhang 17543f3ba80aSJunchao Zhang Level: beginner 17553f3ba80aSJunchao Zhang 17561cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJKokkos()`, `MATSEQAIJKOKKOS`, `MATSEQAIJ`, `MATMPIAIJ` 17573f3ba80aSJunchao Zhang M*/ 1758d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJKokkos(Mat A) 1759d71ae5a4SJacob Faibussowitsch { 17608c3ff71bSJunchao Zhang PetscFunctionBegin; 17619566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 17629566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIAIJ(A)); 17639566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIAIJ_MPIAIJKokkos(A, MATMPIAIJKOKKOS, MAT_INPLACE_MATRIX, &A)); 17643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17658c3ff71bSJunchao Zhang } 17668c3ff71bSJunchao Zhang 17678c3ff71bSJunchao Zhang /*@C 176811a5261eSBarry Smith MatCreateAIJKokkos - Creates a sparse matrix in `MATAIJKOKOS` (compressed row) format 17698c3ff71bSJunchao Zhang (the default parallel PETSc format). This matrix will ultimately pushed down 177020f4b53cSBarry Smith to Kokkos for calculations. 17718c3ff71bSJunchao Zhang 17728c3ff71bSJunchao Zhang Collective 17738c3ff71bSJunchao Zhang 17748c3ff71bSJunchao Zhang Input Parameters: 177511a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF` 177620f4b53cSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 177720f4b53cSBarry Smith This value should be the same as the local size used in creating the 177820f4b53cSBarry Smith y vector for the matrix-vector product y = Ax. 177920f4b53cSBarry Smith . n - This value should be the same as the local size used in creating the 178020f4b53cSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 178120f4b53cSBarry Smith calculated if N is given) For square matrices n is almost always `m`. 178220f4b53cSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 178320f4b53cSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 178420f4b53cSBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 178520f4b53cSBarry Smith (same value is used for all local rows) 178620f4b53cSBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 178720f4b53cSBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 178820f4b53cSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 178920f4b53cSBarry Smith The size of this array is equal to the number of local rows, i.e `m`. 179020f4b53cSBarry Smith For matrices you plan to factor you must leave room for the diagonal entry and 179120f4b53cSBarry Smith put in the entry even if it is zero. 179220f4b53cSBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 179320f4b53cSBarry Smith submatrix (same value is used for all local rows). 179420f4b53cSBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 179520f4b53cSBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 179620f4b53cSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 179720f4b53cSBarry Smith structure. The size of this array is equal to the number 179820f4b53cSBarry Smith of local rows, i.e `m`. 17998c3ff71bSJunchao Zhang 18008c3ff71bSJunchao Zhang Output Parameter: 18018c3ff71bSJunchao Zhang . A - the matrix 18028c3ff71bSJunchao Zhang 18032ef1f0ffSBarry Smith Level: intermediate 18042ef1f0ffSBarry Smith 18052ef1f0ffSBarry Smith Notes: 180611a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 18078c3ff71bSJunchao Zhang MatXXXXSetPreallocation() paradigm instead of this routine directly. 180811a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 18098c3ff71bSJunchao Zhang 1810667f096bSBarry Smith The AIJ format, also called compressed row storage), is fully compatible with standard Fortran 18118c3ff71bSJunchao Zhang storage. That is, the stored row and column indices can begin at 18122ef1f0ffSBarry Smith either one (as in Fortran) or zero. 18138c3ff71bSJunchao Zhang 18141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATAIJKOKOS`, `MATSEQAIJKOKOS`, `MATMPIAIJKOKOS`, `MatCreate()`, `MatCreateAIJ()`, `MatSetValues()`, 1815fe59aa6dSJacob Faibussowitsch `MatSeqAIJSetColumnIndices()`, `MatCreateSeqAIJWithArrays()`, `MATMPIAIJKOKKOS`, `MATAIJKOKKOS` 18168c3ff71bSJunchao Zhang @*/ 1817d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJKokkos(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 1818d71ae5a4SJacob Faibussowitsch { 18198c3ff71bSJunchao Zhang PetscMPIInt size; 18208c3ff71bSJunchao Zhang 18218c3ff71bSJunchao Zhang PetscFunctionBegin; 18229566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 18239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 18249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 18258c3ff71bSJunchao Zhang if (size > 1) { 18269566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJKOKKOS)); 18279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 18288c3ff71bSJunchao Zhang } else { 18299566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJKOKKOS)); 18309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 18318c3ff71bSJunchao Zhang } 18323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18338c3ff71bSJunchao Zhang } 1834