111d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 2076ba34aSJunchao Zhang #include <petscsf.h> 342550becSJunchao Zhang #include <petsc/private/sfimpl.h> 48c3ff71bSJunchao Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 542550becSJunchao Zhang #include <../src/mat/impls/aij/mpi/kokkos/mpiaijkok.hpp> 6076ba34aSJunchao Zhang #include <KokkosSparse_spadd.hpp> 711d22bbfSJunchao Zhang 88c3ff71bSJunchao Zhang PetscErrorCode MatAssemblyEnd_MPIAIJKokkos(Mat A,MatAssemblyType mode) 98c3ff71bSJunchao Zhang { 108c3ff71bSJunchao Zhang PetscErrorCode ierr; 118c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)A->data; 12a587d139SMark Mat_SeqAIJKokkos *aijkok = mpiaij->A->spptr ? static_cast<Mat_SeqAIJKokkos*>(mpiaij->A->spptr) : NULL; 138c3ff71bSJunchao Zhang 148c3ff71bSJunchao Zhang PetscFunctionBegin; 158c3ff71bSJunchao Zhang ierr = MatAssemblyEnd_MPIAIJ(A,mode);CHKERRQ(ierr); 16a587d139SMark if (aijkok && aijkok->device_mat_d.data()) { 17a587d139SMark A->offloadmask = PETSC_OFFLOAD_GPU; // in GPU mode, no going back. MatSetValues checks this 18a587d139SMark } 19a587d139SMark 208c3ff71bSJunchao Zhang PetscFunctionReturn(0); 218c3ff71bSJunchao Zhang } 228c3ff71bSJunchao Zhang 238c3ff71bSJunchao Zhang PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJKokkos(Mat mat,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 248c3ff71bSJunchao Zhang { 258c3ff71bSJunchao Zhang PetscErrorCode ierr; 268c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 278c3ff71bSJunchao Zhang 288c3ff71bSJunchao Zhang PetscFunctionBegin; 298c3ff71bSJunchao Zhang ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 308c3ff71bSJunchao Zhang ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 316a29ce69SStefano Zampini #if defined(PETSC_USE_DEBUG) 328c3ff71bSJunchao Zhang if (d_nnz) { 336a29ce69SStefano Zampini PetscInt i; 348c3ff71bSJunchao Zhang for (i=0; i<mat->rmap->n; i++) { 352c71b3e2SJacob Faibussowitsch PetscCheckFalse(d_nnz[i] < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,d_nnz[i]); 368c3ff71bSJunchao Zhang } 378c3ff71bSJunchao Zhang } 388c3ff71bSJunchao Zhang if (o_nnz) { 396a29ce69SStefano Zampini PetscInt i; 408c3ff71bSJunchao Zhang for (i=0; i<mat->rmap->n; i++) { 412c71b3e2SJacob Faibussowitsch PetscCheckFalse(o_nnz[i] < 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,o_nnz[i]); 428c3ff71bSJunchao Zhang } 438c3ff71bSJunchao Zhang } 446a29ce69SStefano Zampini #endif 456a29ce69SStefano Zampini #if defined(PETSC_USE_CTABLE) 466a29ce69SStefano Zampini ierr = PetscTableDestroy(&mpiaij->colmap);CHKERRQ(ierr); 476a29ce69SStefano Zampini #else 486a29ce69SStefano Zampini ierr = PetscFree(mpiaij->colmap);CHKERRQ(ierr); 496a29ce69SStefano Zampini #endif 506a29ce69SStefano Zampini ierr = PetscFree(mpiaij->garray);CHKERRQ(ierr); 516a29ce69SStefano Zampini ierr = VecDestroy(&mpiaij->lvec);CHKERRQ(ierr); 526a29ce69SStefano Zampini ierr = VecScatterDestroy(&mpiaij->Mvctx);CHKERRQ(ierr); 536a29ce69SStefano Zampini /* Because the B will have been resized we simply destroy it and create a new one each time */ 546a29ce69SStefano Zampini ierr = MatDestroy(&mpiaij->B);CHKERRQ(ierr); 556a29ce69SStefano Zampini 566a29ce69SStefano Zampini if (!mpiaij->A) { 578c3ff71bSJunchao Zhang ierr = MatCreate(PETSC_COMM_SELF,&mpiaij->A);CHKERRQ(ierr); 588c3ff71bSJunchao Zhang ierr = MatSetSizes(mpiaij->A,mat->rmap->n,mat->cmap->n,mat->rmap->n,mat->cmap->n);CHKERRQ(ierr); 598c3ff71bSJunchao Zhang ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)mpiaij->A);CHKERRQ(ierr); 606a29ce69SStefano Zampini } 616a29ce69SStefano Zampini if (!mpiaij->B) { 626a29ce69SStefano Zampini PetscMPIInt size; 6355b25c41SPierre Jolivet ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRMPI(ierr); 648c3ff71bSJunchao Zhang ierr = MatCreate(PETSC_COMM_SELF,&mpiaij->B);CHKERRQ(ierr); 656a29ce69SStefano Zampini ierr = MatSetSizes(mpiaij->B,mat->rmap->n,size > 1 ? mat->cmap->N : 0,mat->rmap->n,size > 1 ? mat->cmap->N : 0);CHKERRQ(ierr); 668c3ff71bSJunchao Zhang ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)mpiaij->B);CHKERRQ(ierr); 678c3ff71bSJunchao Zhang } 686a29ce69SStefano Zampini ierr = MatSetType(mpiaij->A,MATSEQAIJKOKKOS);CHKERRQ(ierr); 696a29ce69SStefano Zampini ierr = MatSetType(mpiaij->B,MATSEQAIJKOKKOS);CHKERRQ(ierr); 708c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(mpiaij->A,d_nz,d_nnz);CHKERRQ(ierr); 718c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(mpiaij->B,o_nz,o_nnz);CHKERRQ(ierr); 728c3ff71bSJunchao Zhang mat->preallocated = PETSC_TRUE; 738c3ff71bSJunchao Zhang PetscFunctionReturn(0); 748c3ff71bSJunchao Zhang } 758c3ff71bSJunchao Zhang 768c3ff71bSJunchao Zhang PetscErrorCode MatMult_MPIAIJKokkos(Mat mat,Vec xx,Vec yy) 778c3ff71bSJunchao Zhang { 788c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 798c3ff71bSJunchao Zhang PetscErrorCode ierr; 808c3ff71bSJunchao Zhang PetscInt nt; 818c3ff71bSJunchao Zhang 828c3ff71bSJunchao Zhang PetscFunctionBegin; 838c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 842c71b3e2SJacob Faibussowitsch PetscCheckFalse(nt != mat->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",mat->cmap->n,nt); 858c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 868c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->mult)(mpiaij->A,xx,yy);CHKERRQ(ierr); 878c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 888c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multadd)(mpiaij->B,mpiaij->lvec,yy,yy);CHKERRQ(ierr); 898c3ff71bSJunchao Zhang PetscFunctionReturn(0); 908c3ff71bSJunchao Zhang } 918c3ff71bSJunchao Zhang 928c3ff71bSJunchao Zhang PetscErrorCode MatMultAdd_MPIAIJKokkos(Mat mat,Vec xx,Vec yy,Vec zz) 938c3ff71bSJunchao Zhang { 948c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 958c3ff71bSJunchao Zhang PetscErrorCode ierr; 968c3ff71bSJunchao Zhang PetscInt nt; 978c3ff71bSJunchao Zhang 988c3ff71bSJunchao Zhang PetscFunctionBegin; 998c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1002c71b3e2SJacob Faibussowitsch PetscCheckFalse(nt != mat->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",mat->cmap->n,nt); 1018c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1028c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->multadd)(mpiaij->A,xx,yy,zz);CHKERRQ(ierr); 1038c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,xx,mpiaij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1048c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multadd)(mpiaij->B,mpiaij->lvec,zz,zz);CHKERRQ(ierr); 1058c3ff71bSJunchao Zhang PetscFunctionReturn(0); 1068c3ff71bSJunchao Zhang } 1078c3ff71bSJunchao Zhang 1088c3ff71bSJunchao Zhang PetscErrorCode MatMultTranspose_MPIAIJKokkos(Mat mat,Vec xx,Vec yy) 1098c3ff71bSJunchao Zhang { 1108c3ff71bSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 1118c3ff71bSJunchao Zhang PetscErrorCode ierr; 1128c3ff71bSJunchao Zhang PetscInt nt; 1138c3ff71bSJunchao Zhang 1148c3ff71bSJunchao Zhang PetscFunctionBegin; 1158c3ff71bSJunchao Zhang ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1162c71b3e2SJacob Faibussowitsch PetscCheckFalse(nt != mat->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of mat (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")",mat->rmap->n,nt); 1178c3ff71bSJunchao Zhang ierr = (*mpiaij->B->ops->multtranspose)(mpiaij->B,xx,mpiaij->lvec);CHKERRQ(ierr); 1188c3ff71bSJunchao Zhang ierr = (*mpiaij->A->ops->multtranspose)(mpiaij->A,xx,yy);CHKERRQ(ierr); 1198c3ff71bSJunchao Zhang ierr = VecScatterBegin(mpiaij->Mvctx,mpiaij->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1208c3ff71bSJunchao Zhang ierr = VecScatterEnd(mpiaij->Mvctx,mpiaij->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1218c3ff71bSJunchao Zhang PetscFunctionReturn(0); 1228c3ff71bSJunchao Zhang } 1238c3ff71bSJunchao Zhang 124076ba34aSJunchao Zhang /* Merge the "A, B" matrices of mat into a matrix C. mat's type is MPIAIJKOKKOS. C's type is MATSEQAIJKOKKOS. 125076ba34aSJunchao Zhang A is put before B. C's size would be A->rmap->n by (A->cmap->n + B->cmap->n). 126076ba34aSJunchao Zhang C still uses local column ids. Their corresponding global column ids are returned in glob. 127076ba34aSJunchao Zhang */ 128076ba34aSJunchao Zhang PetscErrorCode MatMPIAIJGetLocalMatMerge_MPIAIJKokkos(Mat mat,MatReuse reuse,IS *glob,Mat *C) 129076ba34aSJunchao Zhang { 130076ba34aSJunchao Zhang Mat Ad,Ao; 131076ba34aSJunchao Zhang const PetscInt *cmap; 132076ba34aSJunchao Zhang PetscErrorCode ierr; 133076ba34aSJunchao Zhang 134076ba34aSJunchao Zhang PetscFunctionBegin; 135076ba34aSJunchao Zhang ierr = MatMPIAIJGetSeqAIJ(mat,&Ad,&Ao,&cmap);CHKERRQ(ierr); 136076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosMergeMats(Ad,Ao,reuse,C);CHKERRQ(ierr); 137076ba34aSJunchao Zhang if (glob) { 138076ba34aSJunchao Zhang PetscInt cst, i, dn, on, *gidx; 139076ba34aSJunchao Zhang ierr = MatGetLocalSize(Ad,NULL,&dn);CHKERRQ(ierr); 140076ba34aSJunchao Zhang ierr = MatGetLocalSize(Ao,NULL,&on);CHKERRQ(ierr); 141076ba34aSJunchao Zhang ierr = MatGetOwnershipRangeColumn(mat,&cst,NULL);CHKERRQ(ierr); 142076ba34aSJunchao Zhang ierr = PetscMalloc1(dn+on,&gidx);CHKERRQ(ierr); 143076ba34aSJunchao Zhang for (i=0; i<dn; i++) gidx[i] = cst + i; 144076ba34aSJunchao Zhang for (i=0; i<on; i++) gidx[i+dn] = cmap[i]; 145076ba34aSJunchao Zhang ierr = ISCreateGeneral(PetscObjectComm((PetscObject)Ad),dn+on,gidx,PETSC_OWN_POINTER,glob);CHKERRQ(ierr); 146076ba34aSJunchao Zhang } 147076ba34aSJunchao Zhang PetscFunctionReturn(0); 148076ba34aSJunchao Zhang } 149076ba34aSJunchao Zhang 150076ba34aSJunchao Zhang /* Structs used in matrix product C=AB, C=A^tB and C=B^tAB */ 151076ba34aSJunchao Zhang struct MatMatStruct { 152076ba34aSJunchao Zhang MatRowMapKokkosView Cdstart; /* Used to split sequential matrix into petsc's A, B format */ 153076ba34aSJunchao Zhang PetscSF sf; /* SF to send/recv matrix entries */ 154076ba34aSJunchao Zhang MatScalarKokkosView abuf; /* buf of mat values in send/recv */ 155076ba34aSJunchao Zhang Mat C1,C2,B_local; 156076ba34aSJunchao Zhang KokkosCsrMatrix C1_global,C2_global,C_global; 157076ba34aSJunchao Zhang KernelHandle kh; 158076ba34aSJunchao Zhang MatMatStruct() { 159076ba34aSJunchao Zhang C1 = C2 = B_local = NULL; 160076ba34aSJunchao Zhang sf = NULL; 161076ba34aSJunchao Zhang } 162076ba34aSJunchao Zhang 163076ba34aSJunchao Zhang ~MatMatStruct() { 164076ba34aSJunchao Zhang MatDestroy(&C1); 165076ba34aSJunchao Zhang MatDestroy(&C2); 166076ba34aSJunchao Zhang MatDestroy(&B_local); 167076ba34aSJunchao Zhang PetscSFDestroy(&sf); 168076ba34aSJunchao Zhang kh.destroy_spadd_handle(); 169076ba34aSJunchao Zhang } 170076ba34aSJunchao Zhang }; 171076ba34aSJunchao Zhang 172076ba34aSJunchao Zhang struct MatMatStruct_AB : public MatMatStruct { 173076ba34aSJunchao Zhang MatColIdxKokkosView rows; 174076ba34aSJunchao Zhang MatRowMapKokkosView rowoffset; 175076ba34aSJunchao Zhang Mat B_other,C_petsc; /* SEQAIJKOKKOS matrices. TODO: have a better var name than C_petsc */ 176076ba34aSJunchao Zhang 177076ba34aSJunchao Zhang MatMatStruct_AB() : B_other(NULL),C_petsc(NULL){} 178076ba34aSJunchao Zhang ~MatMatStruct_AB() { 179076ba34aSJunchao Zhang MatDestroy(&B_other); 180076ba34aSJunchao Zhang MatDestroy(&C_petsc); 181076ba34aSJunchao Zhang } 182076ba34aSJunchao Zhang }; 183076ba34aSJunchao Zhang 184076ba34aSJunchao Zhang struct MatMatStruct_AtB : public MatMatStruct { 185076ba34aSJunchao Zhang MatRowMapKokkosView srcrowoffset,dstrowoffset; 186076ba34aSJunchao Zhang }; 187076ba34aSJunchao Zhang 188076ba34aSJunchao Zhang struct MatProductData_MPIAIJKokkos 189076ba34aSJunchao Zhang { 190076ba34aSJunchao Zhang MatMatStruct_AB *mmAB; 191076ba34aSJunchao Zhang MatMatStruct_AtB *mmAtB; 192076ba34aSJunchao Zhang PetscBool reusesym; 193076ba34aSJunchao Zhang 194076ba34aSJunchao Zhang MatProductData_MPIAIJKokkos(): mmAB(NULL),mmAtB(NULL),reusesym(PETSC_FALSE){} 195076ba34aSJunchao Zhang ~MatProductData_MPIAIJKokkos() { 196076ba34aSJunchao Zhang delete mmAB; 197076ba34aSJunchao Zhang delete mmAtB; 198076ba34aSJunchao Zhang } 199076ba34aSJunchao Zhang }; 200076ba34aSJunchao Zhang 201076ba34aSJunchao Zhang static PetscErrorCode MatProductDataDestroy_MPIAIJKokkos(void *data) 202076ba34aSJunchao Zhang { 203076ba34aSJunchao Zhang PetscFunctionBegin; 204076ba34aSJunchao Zhang CHKERRCXX(delete static_cast<MatProductData_MPIAIJKokkos*>(data)); 205076ba34aSJunchao Zhang PetscFunctionReturn(0); 206076ba34aSJunchao Zhang } 207076ba34aSJunchao Zhang 208076ba34aSJunchao Zhang /* MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds - Get a KokkosCsrMatrix from a MATSEQAIJKOKKOS matrix 209076ba34aSJunchao Zhang 210076ba34aSJunchao Zhang Input Parameters: 211076ba34aSJunchao Zhang + A - the MATSEQAIJKOKKOS matrix 212076ba34aSJunchao Zhang . N - new column size for the returned Kokkos matrix 213076ba34aSJunchao Zhang - l2g - a map that maps old col ids to new col ids 214076ba34aSJunchao Zhang 215076ba34aSJunchao Zhang Output Parameters: 216076ba34aSJunchao Zhang . csrmat - the Kokkos matrix, which has the same row size as A, shares a, i but not j with A. 217076ba34aSJunchao Zhang */ 218076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(Mat A,PetscInt N,const ConstMatColIdxKokkosView& l2g,KokkosCsrMatrix& csrmat) 219076ba34aSJunchao Zhang { 220076ba34aSJunchao Zhang KokkosCsrMatrix& orig = static_cast<Mat_SeqAIJKokkos*>(A->spptr)->csrmat; 221076ba34aSJunchao Zhang MatColIdxKokkosView jg("jg",orig.nnz()); /* New j array for csrmat */ 222076ba34aSJunchao Zhang 223076ba34aSJunchao Zhang PetscFunctionBegin; 224076ba34aSJunchao Zhang CHKERRCXX(Kokkos::parallel_for(orig.nnz(), KOKKOS_LAMBDA(const PetscInt i) {jg(i) = l2g(orig.graph.entries(i));})); 225076ba34aSJunchao Zhang CHKERRCXX(csrmat = KokkosCsrMatrix("csrmat",orig.numRows(),N,orig.nnz(),orig.values,orig.graph.row_map,jg)); 226076ba34aSJunchao Zhang PetscFunctionReturn(0); 227076ba34aSJunchao Zhang } 228076ba34aSJunchao Zhang 229076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices - Set the diag and offdiag matrices of a MATMPIAIJKOKKOS matrix. 230076ba34aSJunchao Zhang It is similar to MatCreateMPIAIJWithSplitArrays. 231076ba34aSJunchao Zhang 232076ba34aSJunchao Zhang Input Parameters: 233076ba34aSJunchao Zhang + mat - the MATMPIAIJKOKKOS matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set 234076ba34aSJunchao Zhang . A - the diag matrix using local col ids 235076ba34aSJunchao Zhang - B - the offdiag matrix using global col ids 236076ba34aSJunchao Zhang 237076ba34aSJunchao Zhang Output Parameters: 238076ba34aSJunchao Zhang . mat - the updated MATMPIAIJKOKKOS matrix 239076ba34aSJunchao Zhang */ 240076ba34aSJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(Mat mat,Mat A,Mat B) 241076ba34aSJunchao Zhang { 242076ba34aSJunchao Zhang PetscErrorCode ierr; 243076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ*>(mat->data); 244076ba34aSJunchao Zhang PetscInt m,n,M,N,Am,An,Bm,Bn; 245076ba34aSJunchao Zhang Mat_SeqAIJKokkos *bkok = static_cast<Mat_SeqAIJKokkos*>(B->spptr); 246076ba34aSJunchao Zhang 247076ba34aSJunchao Zhang PetscFunctionBegin; 248076ba34aSJunchao Zhang ierr = MatGetSize(mat,&M,&N);CHKERRQ(ierr); 249076ba34aSJunchao Zhang ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 250076ba34aSJunchao Zhang ierr = MatGetLocalSize(A,&Am,&An);CHKERRQ(ierr); 251076ba34aSJunchao Zhang ierr = MatGetLocalSize(B,&Bm,&Bn);CHKERRQ(ierr); 252076ba34aSJunchao Zhang 2532c71b3e2SJacob Faibussowitsch PetscCheckFalse(m != Am || m != Bm,PETSC_COMM_SELF,PETSC_ERR_PLIB,"local number of rows do not match"); 2542c71b3e2SJacob Faibussowitsch PetscCheckFalse(n != An,PETSC_COMM_SELF,PETSC_ERR_PLIB,"local number of columns do not match"); 2552c71b3e2SJacob Faibussowitsch PetscCheckFalse(N != Bn,PETSC_COMM_SELF,PETSC_ERR_PLIB,"global number of columns do not match"); 2562c71b3e2SJacob Faibussowitsch PetscCheckFalse(mpiaij->A || mpiaij->B,PETSC_COMM_SELF,PETSC_ERR_PLIB,"A, B of the MPIAIJ matrix are not empty"); 257076ba34aSJunchao Zhang mpiaij->A = A; 258076ba34aSJunchao Zhang mpiaij->B = B; 259076ba34aSJunchao Zhang 260076ba34aSJunchao Zhang mat->preallocated = PETSC_TRUE; 261076ba34aSJunchao Zhang mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 262076ba34aSJunchao Zhang 263076ba34aSJunchao Zhang ierr = MatSetOption(mat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE);CHKERRQ(ierr); 264076ba34aSJunchao Zhang ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 265076ba34aSJunchao Zhang /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 266076ba34aSJunchao Zhang also gets mpiaij->B compacted, with its col ids and size reduced 267076ba34aSJunchao Zhang */ 268076ba34aSJunchao Zhang ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 269076ba34aSJunchao Zhang ierr = MatSetOption(mat,MAT_NO_OFF_PROC_ENTRIES,PETSC_FALSE);CHKERRQ(ierr); 270076ba34aSJunchao Zhang ierr = MatSetOption(mat,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 271076ba34aSJunchao Zhang 272076ba34aSJunchao Zhang /* Update bkok with new local col ids (stored on host) and size */ 273076ba34aSJunchao Zhang bkok->j_dual.modify_host(); 274076ba34aSJunchao Zhang bkok->j_dual.sync_device(); 275076ba34aSJunchao Zhang bkok->SetColSize(mpiaij->B->cmap->n); 276076ba34aSJunchao Zhang PetscFunctionReturn(0); 277076ba34aSJunchao Zhang } 278076ba34aSJunchao Zhang 279076ba34aSJunchao Zhang /* MatSeqAIJKokkosBcast - Bcast rows of a SEQAIJKOKKOS matrice (B) to form a SEQAIJKOKKOS matrix (C). 280076ba34aSJunchao Zhang 281076ba34aSJunchao Zhang It is essentially the MPIAIJKOKKOS counterpart of MatGetBrowsOfAoCols_MPIAIJ, but supports device and uses PetscSF. 282076ba34aSJunchao Zhang In the given ownerSF, leaves correspond to rows in C, and roots correspond to rows in B. Roots may connect to multiple leaves. 283076ba34aSJunchao Zhang Suppose C's j-th row is connected to a root identified by PetscSFNode (k,i), it means we will bcast the i-th row of B on rank k 284076ba34aSJunchao Zhang to j-th row of C. ownerSF's leaves must be contiguous (in other words, as if ilocal=NULL was used to set its graph). 285076ba34aSJunchao Zhang 286076ba34aSJunchao Zhang Collective on comm of ownerSF 287076ba34aSJunchao Zhang 288076ba34aSJunchao Zhang Input Parameters: 289076ba34aSJunchao Zhang + B - the SEQAIJKOKKOS matrix, using local col ids 290076ba34aSJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 291076ba34aSJunchao Zhang . N - global col ids are in range of [0,N). N Must be the same across ranks (nonsignificant in MAT_REUSE_MATRIX) 292076ba34aSJunchao Zhang . l2g - a map mapping B's local col ids to global ones (nonsignificant in MAT_REUSE_MATRIX) 293076ba34aSJunchao Zhang . ownerSF - the ownership SF (nonsignificant in MAT_REUSE_MATRIX) 294076ba34aSJunchao Zhang 295076ba34aSJunchao Zhang Input/Output Parameters (out when resue = MAT_INITIAL_MATRIX, inout when reuse = MAT_REUSE_MATRIX) 296076ba34aSJunchao Zhang + bcastSF - the SF used to bcast rows of B. This plain SF does buffer (abuf) to buffer (Ca) send/recv. In this SF, vertices are nonzeros. 297076ba34aSJunchao Zhang . abuf - buffer for sending matrix values 298076ba34aSJunchao Zhang . rows - array containing indices of (local) rows that this rank needs to bcast to others. Each receiver rank has a chunk in rows[]. 299076ba34aSJunchao Zhang Values in rows[] might have repeats, which simply indicates a row will be bcast'ed to multiple neighbors. 300076ba34aSJunchao Zhang . rowoffset - For each row in rows[], it will be copied to rowoffset[] at abuf[] 301076ba34aSJunchao Zhang - C - the SEQAIJKOKKOS matrix made of the bcast'ed rows, using local col ids. 302076ba34aSJunchao Zhang */ 303076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJKokkosBcast(Mat B,MatReuse reuse,PetscInt N,const ConstMatColIdxKokkosView& l2g,PetscSF ownerSF, 304076ba34aSJunchao Zhang PetscSF& bcastSF,MatScalarKokkosView& abuf,MatColIdxKokkosView& rows, 305076ba34aSJunchao Zhang MatRowMapKokkosView& rowoffset,Mat& C) 306076ba34aSJunchao Zhang { 307076ba34aSJunchao Zhang PetscErrorCode ierr; 308076ba34aSJunchao Zhang Mat_SeqAIJKokkos *bkok,*ckok; 309076ba34aSJunchao Zhang 310076ba34aSJunchao Zhang PetscFunctionBegin; 311076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosSyncDevice(B);CHKERRQ(ierr); /* Make sure B->spptr is accessible */ 312076ba34aSJunchao Zhang bkok = static_cast<Mat_SeqAIJKokkos*>(B->spptr); 313076ba34aSJunchao Zhang 314076ba34aSJunchao Zhang if (reuse == MAT_REUSE_MATRIX) { 315076ba34aSJunchao Zhang ckok = static_cast<Mat_SeqAIJKokkos*>(C->spptr); 316076ba34aSJunchao Zhang 317076ba34aSJunchao Zhang const auto& Ba = bkok->a_dual.view_device(); 318076ba34aSJunchao Zhang const auto& Bi = bkok->i_dual.view_device(); 319076ba34aSJunchao Zhang const auto& Ca = ckok->a_dual.view_device(); 320076ba34aSJunchao Zhang 321076ba34aSJunchao Zhang /* Copy Ba to abuf */ 322076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(rows.extent(0), Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 323076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* rows[i] is r-th row of B */ 324076ba34aSJunchao Zhang PetscInt r = rows(i); 325076ba34aSJunchao Zhang PetscInt base = rowoffset(i); /* Copy r-th row of B to this offset in abuf[] */ 326076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,Bi(r+1)-Bi(r)),[&](PetscInt k) { 327076ba34aSJunchao Zhang abuf(base+k) = Ba(Bi(r)+k); 328076ba34aSJunchao Zhang }); 329076ba34aSJunchao Zhang }); 330076ba34aSJunchao Zhang 331076ba34aSJunchao Zhang /* Send abuf to Ca through bcastSF and then mark C is updated on device */ 332076ba34aSJunchao Zhang ierr = PetscSFBcastBegin(bcastSF,MPIU_SCALAR,abuf.data(),Ca.data(),MPI_REPLACE);CHKERRQ(ierr); /* TODO: get memtype for abuf */ 333076ba34aSJunchao Zhang ierr = PetscSFBcastEnd (bcastSF,MPIU_SCALAR,abuf.data(),Ca.data(),MPI_REPLACE);CHKERRQ(ierr); 334076ba34aSJunchao Zhang ckok->a_dual.modify_device(); 335076ba34aSJunchao Zhang } else if (reuse == MAT_INITIAL_MATRIX) { 336076ba34aSJunchao Zhang MPI_Comm comm; 337076ba34aSJunchao Zhang PetscMPIInt tag; 338076ba34aSJunchao Zhang PetscInt k,Cm,Cn,Cnnz,*Ci_h,nroots,nleaves; 339076ba34aSJunchao Zhang 340076ba34aSJunchao Zhang ierr = PetscObjectGetComm((PetscObject)ownerSF,&comm);CHKERRMPI(ierr); 341076ba34aSJunchao Zhang ierr = PetscSFGetGraph(ownerSF,&nroots,&nleaves,NULL,NULL);CHKERRQ(ierr); 342076ba34aSJunchao Zhang Cm = nleaves; /* row size of C */ 343076ba34aSJunchao Zhang Cn = N; /* col size of C, which initially uses global ids, so we can safely set its col size as N */ 344076ba34aSJunchao Zhang 345076ba34aSJunchao Zhang /* Get row lens (nz) of B's rows for later fast query */ 346076ba34aSJunchao Zhang PetscInt *Browlens; 347076ba34aSJunchao Zhang const PetscInt *tmp = bkok->i_host_data(); 348076ba34aSJunchao Zhang ierr = PetscMalloc1(nroots,&Browlens);CHKERRQ(ierr); 349076ba34aSJunchao Zhang for (k=0; k<nroots; k++) Browlens[k] = tmp[k+1]-tmp[k]; 350076ba34aSJunchao Zhang 351076ba34aSJunchao Zhang /* By ownerSF, each proc gets lens of rows of C */ 352076ba34aSJunchao Zhang MatRowMapKokkosDualView Ci("i",Cm+1); /* C's rowmap */ 353076ba34aSJunchao Zhang Ci_h = Ci.view_host().data(); 354076ba34aSJunchao Zhang Ci_h[0] = 0; 355076ba34aSJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(ownerSF,MPIU_INT,PETSC_MEMTYPE_HOST,Browlens,PETSC_MEMTYPE_HOST,&Ci_h[1],MPI_REPLACE);CHKERRQ(ierr); 356076ba34aSJunchao Zhang ierr = PetscSFBcastEnd(ownerSF,MPIU_INT,Browlens,&Ci_h[1],MPI_REPLACE);CHKERRQ(ierr); 357076ba34aSJunchao Zhang for (k=1; k<Cm+1; k++) Ci_h[k] += Ci_h[k-1]; /* Convert lens to CSR */ 358076ba34aSJunchao Zhang Cnnz = Ci_h[Cm]; 359076ba34aSJunchao Zhang Ci.modify_host(); 360076ba34aSJunchao Zhang Ci.sync_device(); 361076ba34aSJunchao Zhang 362076ba34aSJunchao Zhang /* With the newly known Cnnz, we are able to allocate (j, a) for C on host & device */ 363076ba34aSJunchao Zhang MatColIdxKokkosDualView Cj("j",Cnnz); 364076ba34aSJunchao Zhang MatScalarKokkosDualView Ca("a",Cnnz); 365076ba34aSJunchao Zhang 366076ba34aSJunchao Zhang /* Now build the bcastSF to fill Ca, Cj. This plain SF only does (contiguous) buffer to buffer send/recv */ 367076ba34aSJunchao Zhang const PetscMPIInt *iranks,*ranks; 368076ba34aSJunchao Zhang const PetscInt *ioffset,*irootloc,*roffset; 369076ba34aSJunchao Zhang PetscInt i,j,niranks,nranks,*sdisp,*rdisp,*rowptr; 370076ba34aSJunchao Zhang MPI_Request *reqs; 371076ba34aSJunchao Zhang 372076ba34aSJunchao Zhang ierr = PetscSFGetLeafRanks(ownerSF,&niranks,&iranks,&ioffset,&irootloc);CHKERRQ(ierr); /* irootloc[] contains indices of rows I need to send to each receiver */ 373076ba34aSJunchao Zhang ierr = PetscSFGetRootRanks(ownerSF,&nranks,&ranks,&roffset,NULL/*rmine*/,NULL/*rremote*/);CHKERRQ(ierr); /* recv info */ 374076ba34aSJunchao Zhang 375076ba34aSJunchao Zhang /* figure out offsets at the send buffer, to build the SF 376076ba34aSJunchao Zhang sdisp[] - stores offsets of nonzeros (in abuf or jbuf, see later) I need to send, per receiver. 377076ba34aSJunchao Zhang rowptr[] - stores offsets for data of each row in abuf 378076ba34aSJunchao Zhang 379076ba34aSJunchao Zhang rdisp[] - to receive sdisp[] 380076ba34aSJunchao Zhang */ 381076ba34aSJunchao Zhang ierr = PetscMalloc3(niranks+1,&sdisp,nranks,&rdisp,niranks+nranks,&reqs);CHKERRQ(ierr); 382076ba34aSJunchao Zhang MatRowMapKokkosViewHost rowptr_h("rowptr_h",ioffset[niranks]+1); /* Let Kokkos do the allocation, so that we can do an easy mirror later */ 383076ba34aSJunchao Zhang rowptr = rowptr_h.data(); 384076ba34aSJunchao Zhang 385076ba34aSJunchao Zhang sdisp[0] = 0; 386076ba34aSJunchao Zhang rowptr[0] = 0; 387076ba34aSJunchao Zhang for (i=0; i<niranks; i++) { /* for each receiver */ 388076ba34aSJunchao Zhang PetscInt len, nz = 0; 389076ba34aSJunchao Zhang for (j=ioffset[i]; j<ioffset[i+1]; j++) { /* for each row to this receiver */ 390076ba34aSJunchao Zhang len = Browlens[irootloc[j]]; 391076ba34aSJunchao Zhang rowptr[j+1] = rowptr[j] + len; 392076ba34aSJunchao Zhang nz += len; 393076ba34aSJunchao Zhang } 394076ba34aSJunchao Zhang sdisp[i+1] = sdisp[i] + nz; 395076ba34aSJunchao Zhang } 396076ba34aSJunchao Zhang ierr = PetscCommGetNewTag(comm,&tag);CHKERRMPI(ierr); 397076ba34aSJunchao Zhang for (i=0; i<nranks; i++) {ierr = MPI_Irecv(&rdisp[i],1,MPIU_INT,ranks[i],tag,comm,&reqs[i]);CHKERRMPI(ierr);} 398076ba34aSJunchao Zhang for (i=0; i<niranks; i++) {ierr = MPI_Isend(&sdisp[i],1,MPIU_INT,iranks[i],tag,comm,&reqs[nranks+i]);CHKERRMPI(ierr);} 399076ba34aSJunchao Zhang ierr = MPI_Waitall(niranks+nranks,reqs,MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 400076ba34aSJunchao Zhang 401076ba34aSJunchao Zhang PetscInt nleaves2 = Cnnz; /* leaves are the nonzeros I will receive */ 402076ba34aSJunchao Zhang PetscInt nroots2 = sdisp[niranks]; /* roots are the nonzeros (in abuf) I will send */ 403076ba34aSJunchao Zhang PetscSFNode *iremote; 404076ba34aSJunchao Zhang ierr = PetscMalloc1(nleaves2,&iremote);CHKERRQ(ierr); 405076ba34aSJunchao Zhang for (i=0; i<nranks; i++) { /* for each sender */ 406076ba34aSJunchao Zhang k = 0; 407076ba34aSJunchao Zhang for (j=Ci_h[roffset[i]]; j<Ci_h[roffset[i+1]]; j++) { 408076ba34aSJunchao Zhang iremote[j].rank = ranks[i]; 409076ba34aSJunchao Zhang iremote[j].index = rdisp[i] + k; 410076ba34aSJunchao Zhang k++; 411076ba34aSJunchao Zhang } 412076ba34aSJunchao Zhang } 413076ba34aSJunchao Zhang /* TODO: we should extend PetscSF APIs for this buffer-to-buffer send/recv */ 414076ba34aSJunchao Zhang ierr = PetscSFCreate(comm,&bcastSF);CHKERRQ(ierr); 415076ba34aSJunchao Zhang ierr = PetscSFSetGraph(bcastSF,nroots2,nleaves2,NULL/*ilocal*/,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 416076ba34aSJunchao Zhang 417076ba34aSJunchao Zhang /* Extract selected rows of B, and copy their (a, j) into abuf[] and jbuf[], with j converted 418076ba34aSJunchao Zhang from local to global. Then use bcastSF to fill Ca, Cj. 419076ba34aSJunchao Zhang */ 420076ba34aSJunchao Zhang ConstMatColIdxKokkosViewHost rows_h(irootloc,ioffset[niranks]); /* irootloc[] stores indices of rows I need to send */ 421076ba34aSJunchao Zhang MatColIdxKokkosView rows("rows",ioffset[niranks]); 422076ba34aSJunchao Zhang Kokkos::deep_copy(rows,rows_h); /* Use deep copy since irootoc is managed by PetscSF and we want 'rows' to be standalone */ 423076ba34aSJunchao Zhang 424076ba34aSJunchao Zhang rowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),rowptr_h); /* If no device, rowoffset will be an alias to rowptr_h */ 425076ba34aSJunchao Zhang 426076ba34aSJunchao Zhang MatColIdxKokkosView jbuf("jbuf",sdisp[niranks]); /* send buf for (global) col ids */ 427076ba34aSJunchao Zhang abuf = MatScalarKokkosView("abuf",sdisp[niranks]); /* send buf for mat values */ 428076ba34aSJunchao Zhang 429076ba34aSJunchao Zhang const auto& Ba = bkok->a_dual.view_device(); 430076ba34aSJunchao Zhang const auto& Bi = bkok->i_dual.view_device(); 431076ba34aSJunchao Zhang const auto& Bj = bkok->j_dual.view_device(); 432076ba34aSJunchao Zhang 433076ba34aSJunchao Zhang /* Copy Ba, Bj to abuf, jbuf with change col ids from local to global */ 434076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(rows.extent(0), Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 435076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* rows[i] is r-th row of B */ 436076ba34aSJunchao Zhang PetscInt r = rows(i); 437076ba34aSJunchao Zhang PetscInt base = rowoffset(i); /* Copy r-th row of B to this offset in abuf[] */ 438076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,Bi(r+1)-Bi(r)),[&](PetscInt k) { 439076ba34aSJunchao Zhang abuf(base+k) = Ba(Bi(r)+k); 440076ba34aSJunchao Zhang jbuf(base+k) = l2g(Bj(Bi(r)+k)); 441076ba34aSJunchao Zhang }); 442076ba34aSJunchao Zhang }); 443076ba34aSJunchao Zhang 444076ba34aSJunchao Zhang /* Send abuf & jbuf to fill Ca, Cj */ 445076ba34aSJunchao Zhang ierr = PetscSFBcastBegin(bcastSF,MPIU_INT, jbuf.data(),Cj.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 446076ba34aSJunchao Zhang ierr = PetscSFBcastBegin(bcastSF,MPIU_SCALAR,abuf.data(),Ca.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 447076ba34aSJunchao Zhang ierr = PetscSFBcastEnd (bcastSF,MPIU_INT, jbuf.data(),Cj.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 448076ba34aSJunchao Zhang ierr = PetscSFBcastEnd (bcastSF,MPIU_SCALAR,abuf.data(),Ca.view_device().data(),MPI_REPLACE);CHKERRQ(ierr); 449076ba34aSJunchao Zhang Cj.modify_device(); /* Mark Cj, Ca modified on device, but only sync Cj since we might not need Ca on host at all */ 450076ba34aSJunchao Zhang Cj.sync_host(); 451076ba34aSJunchao Zhang Ca.modify_device(); 452076ba34aSJunchao Zhang 453076ba34aSJunchao Zhang /* Construct C with Ca, Ci, Cj */ 454076ba34aSJunchao Zhang auto ckok = new Mat_SeqAIJKokkos(Cm,Cn,Cnnz,Ci,Cj,Ca); 455076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,ckok,&C);CHKERRQ(ierr); 456076ba34aSJunchao Zhang ierr = PetscFree3(sdisp,rdisp,reqs);CHKERRQ(ierr); 457076ba34aSJunchao Zhang ierr = PetscFree(Browlens);CHKERRQ(ierr); 45898921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unsupported MatReuse enum %d",reuse); 459076ba34aSJunchao Zhang PetscFunctionReturn(0); 460076ba34aSJunchao Zhang } 461076ba34aSJunchao Zhang 462076ba34aSJunchao Zhang /* MatSeqAIJKokkosReduce - Reduce rows of a SEQAIJKOKKOS matrix (A) to form a Kokkos Csr matrix (C) 463076ba34aSJunchao Zhang 464076ba34aSJunchao Zhang It is the reverse of MatSeqAIJKokkosBcast in some sense. 465076ba34aSJunchao Zhang 466076ba34aSJunchao Zhang Think each row of A as a leaf, then the given ownerSF specifies roots of the leaves. Roots may connect to multiple leaves. 467076ba34aSJunchao Zhang In this routine, we reduce (i.e., concatenate) leaves (rows) at their roots to form potentially longer rows in C. Such rows might 468076ba34aSJunchao Zhang contain repeats, which does not matter since they will be summed up by other routines. C's row size will be nroots of ownerSF. 469076ba34aSJunchao Zhang 470076ba34aSJunchao Zhang Input Parameters: 471076ba34aSJunchao Zhang + A - the SEQAIJKOKKOS matrix to be reduced 472076ba34aSJunchao Zhang . reuse - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 473076ba34aSJunchao Zhang . local - true if A uses local col ids; false if A is already in global col ids. 474076ba34aSJunchao Zhang . N - if local, N is A's global col size 475076ba34aSJunchao Zhang . l2g - if local, a map mapping A's local col ids to global ones, which are in range of [0,N). 476076ba34aSJunchao Zhang - ownerSF - the SF specifies ownership (root) of rows in A 477076ba34aSJunchao Zhang 478076ba34aSJunchao Zhang Output Parameters: 479076ba34aSJunchao Zhang + reduceSF - the SF to reduce A's rows to contiguous buffers at the receiver side 480076ba34aSJunchao Zhang . abuf - a contiguous buffer to receive A's rows sent to this proc. Suppose there are 'nrows' such rows. 481076ba34aSJunchao Zhang . srcrowoffset - offset array of size nrows+1. Each entry is the corresponding row's offset in abuf[]. srcrowoffset[i+1]-srcrowoffset[i] is row i's len. 482076ba34aSJunchao Zhang . dstrowoffset - offset array of size nrows. Each entry is the corresponding row's offset in Ca[], i.e., C's 'a' array. Row i, i+1 in abuf[] may go to 483076ba34aSJunchao Zhang unrelated places in Ca, so dstrowoffset is not in CSR-like format as srcrowoffset. 484076ba34aSJunchao Zhang - C - the matrix made up by rows sent to me from other ranks, using global col ids 485076ba34aSJunchao Zhang 486076ba34aSJunchao Zhang TODO: we can even have MatSeqAIJKokkosReduceBegin/End to provide oppertunity for callers to overlap comp./comm. when reuse = MAT_REUSE_MATRIX. 487076ba34aSJunchao Zhang */ 488076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJKokkosReduce(Mat A,MatReuse reuse,PetscBool local,PetscInt N,const ConstMatColIdxKokkosView& l2g,PetscSF ownerSF, 489076ba34aSJunchao Zhang PetscSF& reduceSF,MatScalarKokkosView& abuf, 490076ba34aSJunchao Zhang MatRowMapKokkosView& srcrowoffset,MatRowMapKokkosView& dstrowoffset, 491076ba34aSJunchao Zhang KokkosCsrMatrix& C) 492076ba34aSJunchao Zhang { 493076ba34aSJunchao Zhang PetscErrorCode ierr; 494076ba34aSJunchao Zhang PetscInt i,r,Am,An,Annz,Cnnz,nrows; 495076ba34aSJunchao Zhang const PetscInt *Ai; 496076ba34aSJunchao Zhang Mat_SeqAIJKokkos *akok; 497076ba34aSJunchao Zhang 498076ba34aSJunchao Zhang PetscFunctionBegin; 499076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosSyncDevice(A);CHKERRQ(ierr); /* So that A's latest data is on device */ 500076ba34aSJunchao Zhang ierr = MatGetSize(A,&Am,&An); 501076ba34aSJunchao Zhang Ai = static_cast<Mat_SeqAIJ*>(A->data)->i; 502076ba34aSJunchao Zhang akok = static_cast<Mat_SeqAIJKokkos*>(A->spptr); 503076ba34aSJunchao Zhang Annz = Ai[Am]; 504076ba34aSJunchao Zhang 505076ba34aSJunchao Zhang if (reuse == MAT_REUSE_MATRIX) { 506076ba34aSJunchao Zhang /* Send Aa to abuf */ 507076ba34aSJunchao Zhang ierr = PetscSFReduceBegin(reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 508076ba34aSJunchao Zhang ierr = PetscSFReduceEnd (reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 509076ba34aSJunchao Zhang 510076ba34aSJunchao Zhang /* Copy abuf to Ca */ 511076ba34aSJunchao Zhang const MatScalarKokkosView& Ca = C.values; 512076ba34aSJunchao Zhang nrows = dstrowoffset.extent(0); /* Not srcrowoffset[] since it has an extra entry for CSR */ 513076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(nrows, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 514076ba34aSJunchao Zhang PetscInt i = t.league_rank(); 515076ba34aSJunchao Zhang PetscInt src = srcrowoffset(i), dst = dstrowoffset(i); 516076ba34aSJunchao Zhang PetscInt len = srcrowoffset(i+1) - srcrowoffset(i); 517076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,len), [&](PetscInt k) {Ca(dst+k) = abuf(src+k);}); 518076ba34aSJunchao Zhang }); 519076ba34aSJunchao Zhang } else if (reuse == MAT_INITIAL_MATRIX) { 520076ba34aSJunchao Zhang MPI_Comm comm; 521076ba34aSJunchao Zhang MPI_Request *reqs; 522076ba34aSJunchao Zhang PetscMPIInt tag; 523076ba34aSJunchao Zhang PetscInt Cm; 524076ba34aSJunchao Zhang 525076ba34aSJunchao Zhang ierr = PetscObjectGetComm((PetscObject)ownerSF,&comm);CHKERRQ(ierr); 526076ba34aSJunchao Zhang ierr = PetscCommGetNewTag(comm,&tag);CHKERRQ(ierr); 527076ba34aSJunchao Zhang 528076ba34aSJunchao Zhang PetscInt niranks,nranks,nroots,nleaves; 529076ba34aSJunchao Zhang const PetscMPIInt *iranks,*ranks; 530076ba34aSJunchao Zhang const PetscInt *ioffset,*rows,*roffset; /* rows[] contains local indices of rows scattered to me from others. ioffset[] is a CSR on rows[] */ 531076ba34aSJunchao Zhang ierr = PetscSFSetUp(ownerSF);CHKERRQ(ierr); 532076ba34aSJunchao Zhang ierr = PetscSFGetLeafRanks(ownerSF,&niranks,&iranks,&ioffset,&rows);CHKERRQ(ierr); /* recv info: iranks[] will send rows to me */ 533076ba34aSJunchao Zhang ierr = PetscSFGetRootRanks(ownerSF,&nranks,&ranks,&roffset,NULL/*rmine*/,NULL/*rremote*/);CHKERRQ(ierr); /* send info */ 534076ba34aSJunchao Zhang ierr = PetscSFGetGraph(ownerSF,&nroots,&nleaves,NULL,NULL);CHKERRQ(ierr); 5352c71b3e2SJacob Faibussowitsch PetscCheckFalse(nleaves != Am,PETSC_COMM_SELF,PETSC_ERR_PLIB,"ownerSF's nleaves(%" PetscInt_FMT ") != row size of A(%" PetscInt_FMT ")",nleaves,Am); 536076ba34aSJunchao Zhang Cm = nroots; 537076ba34aSJunchao Zhang nrows = ioffset[niranks]; /* # of rows to be received. Might receive same row (each is partial) from different senders */ 538076ba34aSJunchao Zhang 539076ba34aSJunchao Zhang /* Tell owners how long each row I will send */ 540076ba34aSJunchao Zhang PetscInt *srowlens; /* send buf of row lens */ 541076ba34aSJunchao Zhang MatRowMapKokkosViewHost rrowlens_h("rrowoffset_h",nrows+1); /* recv buf of row lens. +1 to make CSR later. Memory might be passed to other views */ 542076ba34aSJunchao Zhang PetscInt *rrowlens = rrowlens_h.data(); 543076ba34aSJunchao Zhang 544076ba34aSJunchao Zhang ierr = PetscMalloc2(Am,&srowlens,niranks+nranks,&reqs);CHKERRQ(ierr); 545076ba34aSJunchao Zhang for (i=0; i<Am; i++) srowlens[i] = Ai[i+1] - Ai[i]; 546076ba34aSJunchao Zhang rrowlens[0] = 0; 547076ba34aSJunchao Zhang rrowlens++; /* shift the pointer to make the following expression more readable */ 548076ba34aSJunchao Zhang for (i=0; i<niranks; i++){ierr = MPI_Irecv(&rrowlens[ioffset[i]],ioffset[i+1]-ioffset[i],MPIU_INT,iranks[i],tag,comm,&reqs[i]);CHKERRMPI(ierr);} 549076ba34aSJunchao Zhang for (i=0; i<nranks; i++) {ierr = MPI_Isend(&srowlens[roffset[i]],roffset[i+1]-roffset[i],MPIU_INT,ranks[i],tag,comm,&reqs[niranks+i]);CHKERRMPI(ierr);} 550076ba34aSJunchao Zhang ierr = MPI_Waitall(niranks+nranks,reqs,MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 551076ba34aSJunchao Zhang 552076ba34aSJunchao Zhang /* Owner builds Ci on host by histogramming rrowlens[] */ 553076ba34aSJunchao Zhang MatRowMapKokkosViewHost Ci_h("i",Cm+1); 554076ba34aSJunchao Zhang Kokkos::deep_copy(Ci_h,0); /* Zero Ci */ 555076ba34aSJunchao Zhang MatRowMapType *Ci_ptr = Ci_h.data(); 556076ba34aSJunchao Zhang 557076ba34aSJunchao Zhang for (i=0; i<nrows; i++) { 558076ba34aSJunchao Zhang r = rows[i]; /* local row id of i-th received row */ 559076ba34aSJunchao Zhang #if defined(PETSC_USE_DEBUG) 5602c71b3e2SJacob Faibussowitsch PetscCheckFalse(r<0 || r>=Cm,PETSC_COMM_SELF,PETSC_ERR_PLIB,"local row id (%" PetscInt_FMT ") is out of range [0,%" PetscInt_FMT ")",r,Cm); 561076ba34aSJunchao Zhang #endif 562076ba34aSJunchao Zhang Ci_ptr[r+1] += rrowlens[i]; /* add to length of row r in C */ 563076ba34aSJunchao Zhang } 564076ba34aSJunchao Zhang for (i=0; i<Cm; i++) Ci_ptr[i+1] += Ci_ptr[i]; /* to CSR format */ 565076ba34aSJunchao Zhang Cnnz = Ci_ptr[Cm]; 566076ba34aSJunchao Zhang 567076ba34aSJunchao Zhang /* For each received row, compute src & dst offsets in memory copying (from recv bufs abuf, jbuf to Ca, Cj) */ 568076ba34aSJunchao Zhang MatRowMapKokkosViewHost dstrowoffset_h("dstrowoffset_h",nrows); 569076ba34aSJunchao Zhang PetscInt *dstrowoffset_hptr = dstrowoffset_h.data(); 570076ba34aSJunchao Zhang PetscInt *currowlens; /* Current row lens. They are temp accumulators for row lens in C, to help build dstrowoffset */ 571076ba34aSJunchao Zhang 572076ba34aSJunchao Zhang ierr = PetscCalloc1(Cm,&currowlens);CHKERRQ(ierr); /* Init with zero, to be added to */ 573076ba34aSJunchao Zhang for (i=0; i<nrows; i++) { /* for each row I receive */ 574076ba34aSJunchao Zhang r = rows[i]; /* row id in C */ 575076ba34aSJunchao Zhang dstrowoffset_hptr[i] = Ci_ptr[r] + currowlens[r]; /* dst offset of the new place for each recv'ed row in Ca/Cj */ 576076ba34aSJunchao Zhang currowlens[r] += rrowlens[i]; /* accumulate to length of row r in C */ 577076ba34aSJunchao Zhang } 578076ba34aSJunchao Zhang ierr = PetscFree(currowlens);CHKERRQ(ierr); 579076ba34aSJunchao Zhang 580076ba34aSJunchao Zhang rrowlens--; 581076ba34aSJunchao Zhang for (i=0; i<nrows; i++) rrowlens[i+1] += rrowlens[i]; /* Change rrowlens[] to CSR format */ 582076ba34aSJunchao Zhang dstrowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),dstrowoffset_h); 583076ba34aSJunchao Zhang srcrowoffset = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),rrowlens_h); /* src offset of each recv'ed row in abuf/jbuf */ 584076ba34aSJunchao Zhang 585076ba34aSJunchao Zhang /* Build the reduceSF, which performs buffer to buffer send/recv */ 586076ba34aSJunchao Zhang PetscInt *sdisp,*rdisp; /* buffer to send offsets of roots, and buffer to recv them */ 587076ba34aSJunchao Zhang ierr = PetscMalloc2(niranks,&sdisp,nranks,&rdisp);CHKERRQ(ierr); 588076ba34aSJunchao Zhang for (i=0; i<niranks; i++) sdisp[i] = rrowlens[ioffset[i]]; 589076ba34aSJunchao Zhang for (i=0; i<nranks; i++) {ierr = MPI_Irecv(&rdisp[i],1,MPIU_INT,ranks[i],tag,comm,&reqs[i]);CHKERRMPI(ierr);} 590076ba34aSJunchao Zhang for (i=0; i<niranks; i++) {ierr = MPI_Isend(&sdisp[i],1,MPIU_INT,iranks[i],tag,comm,&reqs[nranks+i]);CHKERRMPI(ierr);} 591076ba34aSJunchao Zhang ierr = MPI_Waitall(niranks+nranks,reqs,MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 592076ba34aSJunchao Zhang 593076ba34aSJunchao Zhang /* Nonzeros in abuf/jbuf are roots and those in A are leaves */ 594076ba34aSJunchao Zhang PetscInt nroots2 = Cnnz,nleaves2 = Annz; 595076ba34aSJunchao Zhang PetscSFNode *iremote; 596076ba34aSJunchao Zhang ierr = PetscMalloc1(nleaves2,&iremote);CHKERRQ(ierr); /* no free, since memory will be given to reduceSF */ 597076ba34aSJunchao Zhang for (i=0; i<nranks; i++) { 598076ba34aSJunchao Zhang PetscInt rootbase = rdisp[i]; /* root offset at this root rank */ 599076ba34aSJunchao Zhang PetscInt leafbase = Ai[roffset[i]]; /* leaf base */ 600076ba34aSJunchao Zhang PetscInt nz = Ai[roffset[i+1]] - leafbase; /* I will send nz nonzeros to this root rank */ 601076ba34aSJunchao Zhang for (PetscInt k=0; k<nz; k++) { 602076ba34aSJunchao Zhang iremote[leafbase+k].rank = ranks[i]; 603076ba34aSJunchao Zhang iremote[leafbase+k].index = rootbase + k; 604076ba34aSJunchao Zhang } 605076ba34aSJunchao Zhang } 606076ba34aSJunchao Zhang ierr = PetscSFCreate(comm,&reduceSF);CHKERRQ(ierr); 607076ba34aSJunchao Zhang ierr = PetscSFSetGraph(reduceSF,nroots2,nleaves2,NULL,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 608076ba34aSJunchao Zhang ierr = PetscFree2(sdisp,rdisp);CHKERRQ(ierr); 609076ba34aSJunchao Zhang 610076ba34aSJunchao Zhang /* Reduce Aa, Ajg to abuf and jbuf */ 611076ba34aSJunchao Zhang 612076ba34aSJunchao Zhang /* If A uses local col ids, convert them to global ones before sending */ 613076ba34aSJunchao Zhang MatColIdxKokkosView Ajg; 614076ba34aSJunchao Zhang if (local) { 615076ba34aSJunchao Zhang Ajg = MatColIdxKokkosView("j",Annz); 616076ba34aSJunchao Zhang const MatColIdxKokkosView& Aj = akok->j_dual.view_device(); 617076ba34aSJunchao Zhang Kokkos::parallel_for(Annz,KOKKOS_LAMBDA(const PetscInt i) {Ajg(i) = l2g(Aj(i));}); 618076ba34aSJunchao Zhang } else { 619076ba34aSJunchao Zhang Ajg = akok->j_dual.view_device(); /* no data copy, just take a reference */ 620076ba34aSJunchao Zhang } 621076ba34aSJunchao Zhang 622076ba34aSJunchao Zhang MatColIdxKokkosView jbuf("jbuf",Cnnz); 623076ba34aSJunchao Zhang abuf = MatScalarKokkosView("abuf",Cnnz); 624076ba34aSJunchao Zhang ierr = PetscSFReduceBegin(reduceSF,MPIU_INT, Ajg.data(), jbuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 625076ba34aSJunchao Zhang ierr = PetscSFReduceEnd (reduceSF,MPIU_INT, Ajg.data(), jbuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 626076ba34aSJunchao Zhang ierr = PetscSFReduceBegin(reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 627076ba34aSJunchao Zhang ierr = PetscSFReduceEnd (reduceSF,MPIU_SCALAR,akok->a_device_data(),abuf.data(),MPI_REPLACE);CHKERRMPI(ierr); 628076ba34aSJunchao Zhang 629076ba34aSJunchao Zhang /* Copy data from abuf, jbuf to Ca, Cj */ 630076ba34aSJunchao Zhang MatRowMapKokkosView Ci = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),Ci_h); /* Ci is an alias of Ci_h if no device */ 631076ba34aSJunchao Zhang MatColIdxKokkosView Cj("j",Cnnz); 632076ba34aSJunchao Zhang MatScalarKokkosView Ca("a",Cnnz); 633076ba34aSJunchao Zhang 634076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(nrows, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 635076ba34aSJunchao Zhang PetscInt i = t.league_rank(); 636076ba34aSJunchao Zhang PetscInt src = srcrowoffset(i), dst = dstrowoffset(i); 637076ba34aSJunchao Zhang PetscInt len = srcrowoffset(i+1) - srcrowoffset(i); 638076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t,len), [&](PetscInt k) { 639076ba34aSJunchao Zhang Ca(dst+k) = abuf(src+k); 640076ba34aSJunchao Zhang Cj(dst+k) = jbuf(src+k); 641076ba34aSJunchao Zhang }); 642076ba34aSJunchao Zhang }); 643076ba34aSJunchao Zhang 644076ba34aSJunchao Zhang /* Build C with Ca, Ci, Cj */ 645076ba34aSJunchao Zhang C = KokkosCsrMatrix("csrmat",Cm,N,Cnnz,Ca,Ci,Cj); 646076ba34aSJunchao Zhang ierr = PetscFree2(srowlens,reqs);CHKERRQ(ierr); 64798921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Unsupported MatReuse enum %d",reuse); 648076ba34aSJunchao Zhang PetscFunctionReturn(0); 649076ba34aSJunchao Zhang } 650076ba34aSJunchao Zhang 651076ba34aSJunchao Zhang /* MatSetMPIAIJKokkosWithGlobalCSRMatrix - Set the diag and offdiag parts of a MATMPIAIJKOKKOS matrix by splitting a KokkosCsrMatrix 652076ba34aSJunchao Zhang 653076ba34aSJunchao Zhang Input Parameters: 654076ba34aSJunchao Zhang + C - the MATMPIAIJKOKKOS matrix, of size m,n,M,N 655076ba34aSJunchao Zhang . reuse - indicate whether the matrix has called this function before 656076ba34aSJunchao Zhang . csrmat - the KokkosCsrMatrix, of size m,N 657076ba34aSJunchao Zhang - Cdstart - when reuse == MAT_REUSE_MATRIX, it is an input parameter. For each row in csrmat, it stores the start of the first 658076ba34aSJunchao Zhang entry of the diag block of C in csrmat's j array. E.g, if row i has col ids = {0, 3, 4, 5, 7, 9} and the first diag 659076ba34aSJunchao Zhang entry is 5, then Cdstart[i] = 3. 660076ba34aSJunchao Zhang 661076ba34aSJunchao Zhang Output Parameters: 662076ba34aSJunchao Zhang + C - the updated MATMPIAIJKOKKOS matrix 663076ba34aSJunchao Zhang - Cdstart - when reuse == MAT_INITIAL_MATRIX, it is an output parameter 664076ba34aSJunchao Zhang 665076ba34aSJunchao Zhang Notes: 666076ba34aSJunchao Zhang Between calls with MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX, csrmat must have the same nonzero pattern 667076ba34aSJunchao Zhang */ 668076ba34aSJunchao Zhang static PetscErrorCode MatSetMPIAIJKokkosWithGlobalCSRMatrix(Mat C,MatReuse reuse,const KokkosCsrMatrix& csrmat,MatRowMapKokkosView& Cdstart) 669076ba34aSJunchao Zhang { 670076ba34aSJunchao Zhang PetscErrorCode ierr; 671076ba34aSJunchao Zhang const MatScalarKokkosView& Ca = csrmat.values; 672076ba34aSJunchao Zhang const ConstMatRowMapKokkosView& Ci = csrmat.graph.row_map; 673076ba34aSJunchao Zhang PetscInt m,n,N; 674076ba34aSJunchao Zhang 675076ba34aSJunchao Zhang PetscFunctionBegin; 676076ba34aSJunchao Zhang ierr = MatGetLocalSize(C,&m,&n);CHKERRQ(ierr); 677076ba34aSJunchao Zhang ierr = MatGetSize(C,NULL,&N);CHKERRQ(ierr); 678076ba34aSJunchao Zhang 679076ba34aSJunchao Zhang if (reuse == MAT_REUSE_MATRIX) { 680076ba34aSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ*>(C->data); 681076ba34aSJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos*>(mpiaij->A->spptr); 682076ba34aSJunchao Zhang Mat_SeqAIJKokkos *bkok = static_cast<Mat_SeqAIJKokkos*>(mpiaij->B->spptr); 683076ba34aSJunchao Zhang const MatScalarKokkosView& Cda = akok->a_dual.view_device(),Coa = bkok->a_dual.view_device(); 684076ba34aSJunchao Zhang const MatRowMapKokkosView& Cdi = akok->i_dual.view_device(),Coi = bkok->i_dual.view_device(); 685076ba34aSJunchao Zhang 686076ba34aSJunchao Zhang /* Fill 'a' of Cd and Co on device */ 687076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(m, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 688076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 689076ba34aSJunchao Zhang PetscInt clen = Ci(i+1) - Ci(i); /* len of row i of C */ 690076ba34aSJunchao Zhang PetscInt cdlen = Cdi(i+1) - Cdi(i); /* len of row i of Cd */ 691076ba34aSJunchao Zhang PetscInt cdstart = Cdstart(i); /* [start, end) of row i of Cd in C */ 692076ba34aSJunchao Zhang PetscInt cdend = cdstart + cdlen; 693076ba34aSJunchao Zhang /* [0, clen) is cut into three blocks: [0, cdstart), [cdstart, cdend), [cdend, clen) */ 694076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, clen), [&](PetscInt k) { 695076ba34aSJunchao Zhang if (k < cdstart) { /* k in [0, cdstart) */ 696076ba34aSJunchao Zhang Coa(Coi(i)+k) = Ca(Ci(i)+k); 697076ba34aSJunchao Zhang } else if (k < cdend) { /* k in [cdstart, cdend) */ 698076ba34aSJunchao Zhang Cda(Cdi(i)+(k-cdstart)) = Ca(Ci(i)+k); 699076ba34aSJunchao Zhang } else { /* k in [cdend, clen) */ 700076ba34aSJunchao Zhang Coa(Coi(i)+k-cdlen) = Ca(Ci(i)+k); 701076ba34aSJunchao Zhang } 702076ba34aSJunchao Zhang }); 703076ba34aSJunchao Zhang }); 704076ba34aSJunchao Zhang 705076ba34aSJunchao Zhang akok->a_dual.modify_device(); 706076ba34aSJunchao Zhang bkok->a_dual.modify_device(); 707076ba34aSJunchao Zhang } else if (reuse == MAT_INITIAL_MATRIX) { 708076ba34aSJunchao Zhang Mat Cd,Co; 709076ba34aSJunchao Zhang const MatColIdxKokkosView& Cj = csrmat.graph.entries; 710076ba34aSJunchao Zhang MatRowMapKokkosDualView Cdi_dual("i",m+1),Coi_dual("i",m+1); 711076ba34aSJunchao Zhang MatRowMapKokkosView Cdi = Cdi_dual.view_device(),Coi = Coi_dual.view_device(); 712076ba34aSJunchao Zhang PetscInt cstart,cend; 713076ba34aSJunchao Zhang 714076ba34aSJunchao Zhang /* Note that each row of C is sorted by col ids. We want to find out how to cut each row into three blocks: 715076ba34aSJunchao Zhang left to the diag block, diag block, right to the diag block. The diag block have col ids in [cstart,cend). 716076ba34aSJunchao Zhang Suppose a row of C has len nonzeros, indexed by [0, len). We want to know two indices: cdstart and cdend, 717076ba34aSJunchao Zhang such that the three blocks are [0,cdstart), [cdstart,cdend), [cdend,len). The following code equivalentaly 718076ba34aSJunchao Zhang stores values of cdstart and cdend-cstart (aka Cdi[]) instead. 719076ba34aSJunchao Zhang */ 720076ba34aSJunchao Zhang Cdstart = MatRowMapKokkosView("Cdstart",m); 721076ba34aSJunchao Zhang ierr = PetscLayoutGetRange(C->cmap,&cstart,&cend);CHKERRQ(ierr); /* Not MatGetOwnershipRangeColumn() since C has not been preallocated yet */ 722076ba34aSJunchao Zhang 723076ba34aSJunchao Zhang /* I could use RangePolicy and one thread per row. But since each thread essentially does binary search, threads in a 724076ba34aSJunchao Zhang CUDA warp would completely diverge. So I use TeamPolicy with a team size 1. 725076ba34aSJunchao Zhang */ 726076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(m, 1),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 727076ba34aSJunchao Zhang Kokkos::single(Kokkos::PerTeam(t), [=] () { /* Only one thread works in a team */ 728076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 729076ba34aSJunchao Zhang PetscInt j,first,count,step; 730076ba34aSJunchao Zhang 731076ba34aSJunchao Zhang if (i == 0) { /* Set the first entry of the i arrays to zero on device, to be used in CSR */ 732076ba34aSJunchao Zhang Cdi(0) = 0; 733076ba34aSJunchao Zhang Coi(0) = 0; 734076ba34aSJunchao Zhang } 735076ba34aSJunchao Zhang 736076ba34aSJunchao Zhang /* Do std::lower_bound(Ci(i),Ci(i+1),cstart) on Cj[]. We use j as the iterator. lower_bound() returns 737076ba34aSJunchao Zhang in 'first' the first iterator with a value >= cstart, or last iterator if no such element is found. 738076ba34aSJunchao Zhang */ 739076ba34aSJunchao Zhang count = Ci(i+1)-Ci(i); 740076ba34aSJunchao Zhang first = Ci(i); 741076ba34aSJunchao Zhang while (count > 0) { 742076ba34aSJunchao Zhang j = first; 743076ba34aSJunchao Zhang step = count / 2; 744076ba34aSJunchao Zhang j += step; 745076ba34aSJunchao Zhang if (Cj(j) < cstart) { 746076ba34aSJunchao Zhang first = ++j; 747076ba34aSJunchao Zhang count -= step + 1; 748076ba34aSJunchao Zhang } else count = step; 749076ba34aSJunchao Zhang } 750076ba34aSJunchao Zhang Cdstart(i) = first - Ci(i); /* 'first' is the while-loop's output */ 751076ba34aSJunchao Zhang 752076ba34aSJunchao Zhang /* Do std::lower_bound(first,Ci(i+1),cend) on Cj[] */ 753076ba34aSJunchao Zhang count = Ci(i+1) - first; 754076ba34aSJunchao Zhang while (count > 0) { 755076ba34aSJunchao Zhang j = first; 756076ba34aSJunchao Zhang step = count / 2; 757076ba34aSJunchao Zhang j += step; 758076ba34aSJunchao Zhang if (Cj(j) < cend) { 759076ba34aSJunchao Zhang first = ++j; 760076ba34aSJunchao Zhang count -= step + 1; 761076ba34aSJunchao Zhang } else count = step; 762076ba34aSJunchao Zhang } 763076ba34aSJunchao Zhang Cdi(i+1) = first - (Ci(i)+Cdstart(i)); /* 'first' is the while-loop's output */ 764076ba34aSJunchao Zhang Coi(i+1) = (Ci(i+1)-Ci(i)) - Cdi(i+1); /* Co's row len = C's row len - Cd's row len */ 765076ba34aSJunchao Zhang }); 766076ba34aSJunchao Zhang }); 767076ba34aSJunchao Zhang 768076ba34aSJunchao Zhang /* Convert row lens in Cdi[], Coi[] to CSR format using inclusive scan, e.g., changing [0,1,2,3] into [0,1,3,6] */ 769076ba34aSJunchao Zhang Kokkos::parallel_scan(m+1,KOKKOS_LAMBDA(const PetscInt i,PetscInt& update,const bool final) { 770076ba34aSJunchao Zhang update += Cdi(i); 771076ba34aSJunchao Zhang if (final) Cdi(i) = update; 772076ba34aSJunchao Zhang }); 773076ba34aSJunchao Zhang Kokkos::parallel_scan(m+1,KOKKOS_LAMBDA(const PetscInt i,PetscInt& update,const bool final) { 774076ba34aSJunchao Zhang update += Coi(i); 775076ba34aSJunchao Zhang if (final) Coi(i) = update; 776076ba34aSJunchao Zhang }); 777076ba34aSJunchao Zhang 778076ba34aSJunchao Zhang /* Get Cdi, Coi on host (it is not a waste, since we do need them on host in 779076ba34aSJunchao Zhang MatCreateSeqAIJKokkosWithCSRMatrix() below), then get nnz of Cd and Co. 780076ba34aSJunchao Zhang */ 781076ba34aSJunchao Zhang Cdi_dual.modify_device(); 782076ba34aSJunchao Zhang Coi_dual.modify_device(); 783076ba34aSJunchao Zhang Cdi_dual.sync_host(); 784076ba34aSJunchao Zhang Coi_dual.sync_host(); 785076ba34aSJunchao Zhang PetscInt Cd_nnz = Cdi_dual.view_host().data()[m]; 786076ba34aSJunchao Zhang PetscInt Co_nnz = Coi_dual.view_host().data()[m]; 787076ba34aSJunchao Zhang 788076ba34aSJunchao Zhang /* With nnz, allocate a, j for Cd and Co */ 789076ba34aSJunchao Zhang MatColIdxKokkosDualView Cdj_dual("j",Cd_nnz),Coj_dual("j",Co_nnz); 790076ba34aSJunchao Zhang MatScalarKokkosDualView Cda_dual("a",Cd_nnz),Coa_dual("a",Co_nnz); 791076ba34aSJunchao Zhang 792076ba34aSJunchao Zhang /* Fill a, j of Cd and Co on device */ 793076ba34aSJunchao Zhang MatColIdxKokkosView Cdj = Cdj_dual.view_device(),Coj = Coj_dual.view_device(); 794076ba34aSJunchao Zhang MatScalarKokkosView Cda = Cda_dual.view_device(),Coa = Coa_dual.view_device(); 795076ba34aSJunchao Zhang 796076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamPolicy<>(m, Kokkos::AUTO()),KOKKOS_LAMBDA(const KokkosTeamMemberType& t) { 797076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 798076ba34aSJunchao Zhang PetscInt clen = Ci(i+1) - Ci(i); /* len of row i of C */ 799076ba34aSJunchao Zhang PetscInt cdlen = Cdi(i+1) - Cdi(i); /* len of row i of Cd */ 800076ba34aSJunchao Zhang PetscInt cdstart = Cdstart(i); /* [start, end) of row i of Cd in C */ 801076ba34aSJunchao Zhang PetscInt cdend = cdstart + cdlen; 802076ba34aSJunchao Zhang /* [0, clen) is cut into three blocks: [0, cdstart), [cdstart, cdend), [cdend, clen) */ 803076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, clen), [&](PetscInt k) { 804076ba34aSJunchao Zhang if (k < cdstart) { /* k in [0, cdstart) */ 805076ba34aSJunchao Zhang Coa(Coi(i)+k) = Ca(Ci(i)+k); 806076ba34aSJunchao Zhang Coj(Coi(i)+k) = Cj(Ci(i)+k); 807076ba34aSJunchao Zhang } else if (k < cdend) { /* k in [cdstart, cdend) */ 808076ba34aSJunchao Zhang Cda(Cdi(i)+(k-cdstart)) = Ca(Ci(i)+k); 809076ba34aSJunchao Zhang Cdj(Cdi(i)+(k-cdstart)) = Cj(Ci(i)+k) - cstart; /* Use local col ids in Cdj */ 810076ba34aSJunchao Zhang } else { /* k in [cdend, clen) */ 811076ba34aSJunchao Zhang Coa(Coi(i)+k-cdlen) = Ca(Ci(i)+k); 812076ba34aSJunchao Zhang Coj(Coi(i)+k-cdlen) = Cj(Ci(i)+k); 813076ba34aSJunchao Zhang } 814076ba34aSJunchao Zhang }); 815076ba34aSJunchao Zhang }); 816076ba34aSJunchao Zhang 817076ba34aSJunchao Zhang Cdj_dual.modify_device(); 818076ba34aSJunchao Zhang Cda_dual.modify_device(); 819076ba34aSJunchao Zhang Coj_dual.modify_device(); 820076ba34aSJunchao Zhang Coa_dual.modify_device(); 821076ba34aSJunchao Zhang /* With a, i, j for Cd and Co, finally build Cd, Co and then C. Their offloadmask will be set in each's MatAssemblyEnd */ 822076ba34aSJunchao Zhang auto cdkok = new Mat_SeqAIJKokkos(m,n,Cd_nnz,Cdi_dual,Cdj_dual,Cda_dual); 823076ba34aSJunchao Zhang auto cokok = new Mat_SeqAIJKokkos(m,N,Co_nnz,Coi_dual,Coj_dual,Coa_dual); 824076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,cdkok,&Cd);CHKERRQ(ierr); 825076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,cokok,&Co);CHKERRQ(ierr); 826076ba34aSJunchao Zhang ierr = MatSetMPIAIJKokkosWithSplitSeqAIJKokkosMatrices(C,Cd,Co);CHKERRQ(ierr); /* Coj will be converted to local ids within */ 827076ba34aSJunchao Zhang } 828076ba34aSJunchao Zhang PetscFunctionReturn(0); 829076ba34aSJunchao Zhang } 830076ba34aSJunchao Zhang 831076ba34aSJunchao Zhang /* MatSeqAIJCompactOutExtraColumns_SeqAIJKokkos - Compact a SEQAIJKOKKS matrix's global col ids. 832076ba34aSJunchao Zhang 833076ba34aSJunchao Zhang It is similar to MatSeqAIJCompactOutExtraColumns_SeqAIJ, but it applies to SEQAIJKOKKOS and returns the l2g map in Kokkos view. 834076ba34aSJunchao Zhang 835076ba34aSJunchao Zhang Input Parameters: 836076ba34aSJunchao Zhang + C - the MATMPIAIJKOKKOS matrix, of size m,n,M,N 837076ba34aSJunchao Zhang . reuse - indicate whether the matrix has called this function before 838076ba34aSJunchao Zhang . csrmat - the KokkosCsrMatrix, of size m,N 839076ba34aSJunchao Zhang - Cdoffset - when reuse == MAT_REUSE_MATRIX, it is an input parameter. For each row in csrmat, it stores the offset of the first 840076ba34aSJunchao Zhang entry of the diag block of C in csrmat's j array. 841076ba34aSJunchao Zhang 842076ba34aSJunchao Zhang Output Parameters: 843076ba34aSJunchao Zhang + C - the updated MATMPIAIJKOKKOS matrix 844076ba34aSJunchao Zhang - Cdoffset - when reuse == MAT_INITIAL_MATRIX, it is an output parameter 845076ba34aSJunchao Zhang 846076ba34aSJunchao Zhang Notes: the input matrix's col ids and col size will be changed. 847076ba34aSJunchao Zhang */ 848076ba34aSJunchao Zhang static PetscErrorCode MatSeqAIJCompactOutExtraColumns_SeqAIJKokkos(Mat C,MatColIdxKokkosView& l2g) 849076ba34aSJunchao Zhang { 850076ba34aSJunchao Zhang PetscErrorCode ierr; 851076ba34aSJunchao Zhang Mat_SeqAIJKokkos *ckok; 852076ba34aSJunchao Zhang ISLocalToGlobalMapping l2gmap; 853076ba34aSJunchao Zhang const PetscInt *garray; 854076ba34aSJunchao Zhang PetscInt sz; 855076ba34aSJunchao Zhang 856076ba34aSJunchao Zhang PetscFunctionBegin; 857076ba34aSJunchao Zhang /* Compact P_other's global col ids and col size. We do it since we guess with local ids KK might be more memory scalable */ 858076ba34aSJunchao Zhang ierr = MatSeqAIJCompactOutExtraColumns_SeqAIJ(C,&l2gmap);CHKERRQ(ierr); 859076ba34aSJunchao Zhang ckok = static_cast<Mat_SeqAIJKokkos*>(C->spptr); 860076ba34aSJunchao Zhang ckok->j_dual.modify_host(); /* P_other's j is modified on host; we need to sync it on device */ 861076ba34aSJunchao Zhang ckok->j_dual.sync_device(); 862076ba34aSJunchao Zhang ckok->SetColSize(C->cmap->n); /* Update col size of the csrmat in spptr */ 863076ba34aSJunchao Zhang 864076ba34aSJunchao Zhang /* Build l2g -- the local to global mapping of C's cols */ 865076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingGetIndices(l2gmap,&garray);CHKERRQ(ierr); 866076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingGetSize(l2gmap,&sz);CHKERRQ(ierr); 8672c71b3e2SJacob Faibussowitsch PetscCheckFalse(C->cmap->n != sz,PETSC_COMM_SELF,PETSC_ERR_PLIB,"matrix column size(%" PetscInt_FMT ") != l2g mapping size(%" PetscInt_FMT ")", C->cmap->n,sz); 868076ba34aSJunchao Zhang 869076ba34aSJunchao Zhang ConstMatColIdxKokkosViewHost tmp(garray,sz); 870076ba34aSJunchao Zhang l2g = MatColIdxKokkosView("l2g",sz); 871076ba34aSJunchao Zhang Kokkos::deep_copy(l2g,tmp); 872076ba34aSJunchao Zhang 873076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingRestoreIndices(l2gmap,&garray);CHKERRQ(ierr); 874076ba34aSJunchao Zhang ierr = ISLocalToGlobalMappingDestroy(&l2gmap);CHKERRQ(ierr); 875076ba34aSJunchao Zhang PetscFunctionReturn(0); 876076ba34aSJunchao Zhang } 877076ba34aSJunchao Zhang 878076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AB - AB flavor of MatProductSymbolic_MPIAIJKokkos 879076ba34aSJunchao Zhang 880076ba34aSJunchao Zhang Input Parameters: 881076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 882076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 883076ba34aSJunchao Zhang . B - an MPIAIJKOKKOS matrix 884076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data when computing AB. Persist from symbolic to numeric operations. 885076ba34aSJunchao Zhang 886076ba34aSJunchao Zhang Notes: The local part of the result C is stored as mm->C_global, which is of type KokkosCsrMatrix and uses global col ids. 887076ba34aSJunchao Zhang */ 888076ba34aSJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AB(Mat_Product *product,Mat A,Mat B,MatMatStruct_AB *mm) 889076ba34aSJunchao Zhang { 890076ba34aSJunchao Zhang PetscErrorCode ierr; 891076ba34aSJunchao Zhang Mat_MPIAIJ *a = static_cast<Mat_MPIAIJ*>(A->data); 892076ba34aSJunchao Zhang Mat Ad = a->A,Ao = a->B; /* diag and offdiag of A */ 893076ba34aSJunchao Zhang IS glob = NULL; 894076ba34aSJunchao Zhang const PetscInt *garray; 895076ba34aSJunchao Zhang PetscInt N = B->cmap->N,sz; 896076ba34aSJunchao Zhang ConstMatColIdxKokkosView l2g1; /* two temp maps mapping local col ids to global ones */ 897076ba34aSJunchao Zhang MatColIdxKokkosView l2g2; 898076ba34aSJunchao Zhang Mat C1,C2; /* intermediate matrices */ 899076ba34aSJunchao Zhang 900076ba34aSJunchao Zhang PetscFunctionBegin; 901076ba34aSJunchao Zhang /* C1 = Ad * B_local. B_local is a matrix got by merging Bd and Bo, and uses local col ids */ 902076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_INITIAL_MATRIX,&glob,&mm->B_local);CHKERRQ(ierr); 903076ba34aSJunchao Zhang ierr = MatProductCreate(Ad,mm->B_local,NULL,&C1);CHKERRQ(ierr); 904076ba34aSJunchao Zhang ierr = MatProductSetType(C1,MATPRODUCT_AB);CHKERRQ(ierr); 905076ba34aSJunchao Zhang ierr = MatProductSetFill(C1,product->fill);CHKERRQ(ierr); 906076ba34aSJunchao Zhang C1->product->api_user = product->api_user; 907076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C1);CHKERRQ(ierr); 9082c71b3e2SJacob Faibussowitsch PetscCheckFalse(!C1->ops->productsymbolic,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C1->product->type]); 909076ba34aSJunchao Zhang ierr = (*C1->ops->productsymbolic)(C1);CHKERRQ(ierr); 910076ba34aSJunchao Zhang 911076ba34aSJunchao Zhang ierr = ISGetIndices(glob,&garray);CHKERRQ(ierr); 912076ba34aSJunchao Zhang ierr = ISGetSize(glob,&sz);CHKERRQ(ierr); 913076ba34aSJunchao Zhang const auto& tmp = ConstMatColIdxKokkosViewHost(garray,sz); /* wrap garray as a view */ 914076ba34aSJunchao Zhang l2g1 = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),tmp); /* maybe just an alias to tmp, so we restore garray at the very end */ 915076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(C1,N,l2g1,mm->C1_global); 916076ba34aSJunchao Zhang 917076ba34aSJunchao Zhang /* C2 = Ao * B_other. B_other is a matrix consisting of needed rows of B gathered from other procs */ 918076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosBcast(mm->B_local,MAT_INITIAL_MATRIX,N,l2g1,a->Mvctx,mm->sf, 919076ba34aSJunchao Zhang mm->abuf,mm->rows,mm->rowoffset,mm->B_other);CHKERRQ(ierr); 920076ba34aSJunchao Zhang 921076ba34aSJunchao Zhang /* Compact B_other to use local ids as we guess KK spgemm is more memroy scalable with that; We could skip the compaction to simplify code */ 922076ba34aSJunchao Zhang ierr = MatSeqAIJCompactOutExtraColumns_SeqAIJKokkos(mm->B_other,l2g2);CHKERRQ(ierr); 923076ba34aSJunchao Zhang ierr = MatProductCreate(Ao,mm->B_other,NULL,&C2);CHKERRQ(ierr); 924076ba34aSJunchao Zhang ierr = MatProductSetType(C2,MATPRODUCT_AB);CHKERRQ(ierr); 925076ba34aSJunchao Zhang ierr = MatProductSetFill(C2,product->fill);CHKERRQ(ierr); 926076ba34aSJunchao Zhang C2->product->api_user = product->api_user; 927076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C2);CHKERRQ(ierr); 9282c71b3e2SJacob Faibussowitsch PetscCheckFalse(!C2->ops->productsymbolic,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C2->product->type]); 929076ba34aSJunchao Zhang ierr = (*C2->ops->productsymbolic)(C2);CHKERRQ(ierr); 930076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(C2,N,l2g2,mm->C2_global); 931076ba34aSJunchao Zhang 932076ba34aSJunchao Zhang /* C = C1 + C2. We actually use their global col ids versions in adding */ 933076ba34aSJunchao Zhang mm->kh.create_spadd_handle(false); /* Input C1, C2 are NOT sorted, since B_local, B_other are not */ 934076ba34aSJunchao Zhang KokkosSparse::spadd_symbolic(&mm->kh,mm->C1_global,mm->C2_global,mm->C_global); 935076ba34aSJunchao Zhang /* Have to do numeric since spadd_symbolic does not really populate column indices of the result matrix */ 936076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&mm->kh,(MatScalarType)1.0,mm->C1_global,(MatScalarType)1.0,mm->C2_global,mm->C_global); 937076ba34aSJunchao Zhang 938076ba34aSJunchao Zhang mm->C1 = C1; 939076ba34aSJunchao Zhang mm->C2 = C2; 940076ba34aSJunchao Zhang ierr = ISRestoreIndices(glob,&garray);CHKERRQ(ierr); 941076ba34aSJunchao Zhang ierr = ISDestroy(&glob);CHKERRQ(ierr); 942076ba34aSJunchao Zhang PetscFunctionReturn(0); 943076ba34aSJunchao Zhang } 944076ba34aSJunchao Zhang 945076ba34aSJunchao Zhang /* MatProductSymbolic_MPIAIJKokkos_AtB - A^tB flavor of MatProductSymbolic_MPIAIJKokkos 946076ba34aSJunchao Zhang 947076ba34aSJunchao Zhang Input Parameters: 948076ba34aSJunchao Zhang + product - Mat_Product which carried out the computation. Passed in to access info about this mat product. 949076ba34aSJunchao Zhang . A - an MPIAIJKOKKOS matrix 950076ba34aSJunchao Zhang . B - a SEQAIJKOKKOS matrix. It works as if A^t is multiplied by a parallel matrix made up of Bs on each rank. 951076ba34aSJunchao Zhang . localB - Does B use local col ids? If false, then B is already in global col ids. 952076ba34aSJunchao Zhang . N - col size of the "parallel B matrix". It implies B's global col ids are in range of [0,N) and N is the same across the communicator. 953076ba34aSJunchao Zhang . l2g - If localB, then l2g maps B's local col ids to global ones. 954076ba34aSJunchao Zhang - mm - a struct used to stash intermediate data in AtB 955076ba34aSJunchao Zhang 956076ba34aSJunchao Zhang Notes: The local part of the result C is stored as mm->C_global, which is of type KokkosCsrMatrix and uses global col ids. 957076ba34aSJunchao Zhang */ 958076ba34aSJunchao Zhang static PetscErrorCode MatProductSymbolic_MPIAIJKokkos_AtB(Mat_Product *product,Mat A,Mat B,PetscBool localB,PetscInt N,const ConstMatColIdxKokkosView& l2g,MatMatStruct_AtB *mm) 959076ba34aSJunchao Zhang { 960076ba34aSJunchao Zhang PetscErrorCode ierr; 961076ba34aSJunchao Zhang Mat_MPIAIJ *a = static_cast<Mat_MPIAIJ*>(A->data); 962076ba34aSJunchao Zhang Mat Ad = a->A,Ao = a->B; /* diag and offdiag of A */ 963076ba34aSJunchao Zhang Mat C1,C2; /* intermediate matrices */ 964076ba34aSJunchao Zhang 965076ba34aSJunchao Zhang PetscFunctionBegin; 966076ba34aSJunchao Zhang /* C1 = Ad^t * B */ 967076ba34aSJunchao Zhang ierr = MatProductCreate(Ad,B,NULL,&C1);CHKERRQ(ierr); 968076ba34aSJunchao Zhang ierr = MatProductSetType(C1,MATPRODUCT_AtB);CHKERRQ(ierr); 969076ba34aSJunchao Zhang ierr = MatProductSetFill(C1,product->fill);CHKERRQ(ierr); 970076ba34aSJunchao Zhang C1->product->api_user = product->api_user; 971076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C1);CHKERRQ(ierr); 9722c71b3e2SJacob Faibussowitsch PetscCheckFalse(!C1->ops->productsymbolic,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C1->product->type]); 973076ba34aSJunchao Zhang ierr = (*C1->ops->productsymbolic)(C1);CHKERRQ(ierr); 974076ba34aSJunchao Zhang 975076ba34aSJunchao Zhang if (localB) {ierr = MatSeqAIJKokkosGetCSRMatrixWithGlobalColumnIds(C1,N,l2g,mm->C1_global);} 976076ba34aSJunchao Zhang else mm->C1_global = static_cast<Mat_SeqAIJKokkos*>(C1->spptr)->csrmat; /* the csrmat already uses global col ids */ 977076ba34aSJunchao Zhang 978076ba34aSJunchao Zhang /* C2 = Ao^t * B */ 979076ba34aSJunchao Zhang ierr = MatProductCreate(Ao,B,NULL,&C2);CHKERRQ(ierr); 980076ba34aSJunchao Zhang ierr = MatProductSetType(C2,MATPRODUCT_AtB);CHKERRQ(ierr); 981076ba34aSJunchao Zhang ierr = MatProductSetFill(C2,product->fill);CHKERRQ(ierr); 982076ba34aSJunchao Zhang C2->product->api_user = product->api_user; 983076ba34aSJunchao Zhang ierr = MatProductSetFromOptions(C2);CHKERRQ(ierr); 9842c71b3e2SJacob Faibussowitsch PetscCheckFalse(!C2->ops->productsymbolic,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing symbolic op for %s",MatProductTypes[C2->product->type]); 985076ba34aSJunchao Zhang ierr = (*C2->ops->productsymbolic)(C2);CHKERRQ(ierr); 986076ba34aSJunchao Zhang 987076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosReduce(C2,MAT_INITIAL_MATRIX,localB,N,l2g,a->Mvctx,mm->sf,mm->abuf, 988076ba34aSJunchao Zhang mm->srcrowoffset,mm->dstrowoffset,mm->C2_global);CHKERRQ(ierr); 989076ba34aSJunchao Zhang 990076ba34aSJunchao Zhang mm->kh.create_spadd_handle(false); /* Input C1, C2 are NOT sorted, since B may be not */ 991076ba34aSJunchao Zhang KokkosSparse::spadd_symbolic(&mm->kh,mm->C1_global,mm->C2_global,mm->C_global); 992076ba34aSJunchao Zhang /* Have to do numeric since spadd_symbolic does not really populate column indices of the result matrix */ 993076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&mm->kh,(MatScalarType)1.0,mm->C1_global,(MatScalarType)1.0,mm->C2_global,mm->C_global); 994076ba34aSJunchao Zhang mm->C1 = C1; 995076ba34aSJunchao Zhang mm->C2 = C2; 996076ba34aSJunchao Zhang PetscFunctionReturn(0); 997076ba34aSJunchao Zhang } 998076ba34aSJunchao Zhang 999076ba34aSJunchao Zhang PetscErrorCode MatProductNumeric_MPIAIJKokkos(Mat C) 1000076ba34aSJunchao Zhang { 1001076ba34aSJunchao Zhang PetscErrorCode ierr; 1002076ba34aSJunchao Zhang Mat_Product *product = C->product; 1003076ba34aSJunchao Zhang MatProductType ptype; 1004076ba34aSJunchao Zhang MatProductData_MPIAIJKokkos *mmdata; 1005076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 1006076ba34aSJunchao Zhang MatMatStruct_AB *ab; 1007076ba34aSJunchao Zhang MatMatStruct_AtB *atb; 1008076ba34aSJunchao Zhang Mat A,B,Ad,Ao,Bd,Bo; 1009076ba34aSJunchao Zhang const MatScalarType one = 1.0; /* Not use literal 1.0 directly, to avoid wrong template instantiation in KokkosSparse::spadd_numeric */ 1010076ba34aSJunchao Zhang 1011076ba34aSJunchao Zhang PetscFunctionBegin; 1012076ba34aSJunchao Zhang MatCheckProduct(C,1); 1013076ba34aSJunchao Zhang mmdata = static_cast<MatProductData_MPIAIJKokkos*>(product->data); 1014076ba34aSJunchao Zhang ptype = product->type; 1015076ba34aSJunchao Zhang A = product->A; 1016076ba34aSJunchao Zhang B = product->B; 1017076ba34aSJunchao Zhang Ad = static_cast<Mat_MPIAIJ*>(A->data)->A; 1018076ba34aSJunchao Zhang Ao = static_cast<Mat_MPIAIJ*>(A->data)->B; 1019076ba34aSJunchao Zhang Bd = static_cast<Mat_MPIAIJ*>(B->data)->A; 1020076ba34aSJunchao Zhang Bo = static_cast<Mat_MPIAIJ*>(B->data)->B; 1021076ba34aSJunchao Zhang 1022076ba34aSJunchao Zhang if (mmdata->reusesym) { /* We reached here through e.g., MatMatMult(A,B,MAT_INITIAL_MATRIX,..,C), where symbolic/numeric are combined */ 1023076ba34aSJunchao Zhang mmdata->reusesym = PETSC_FALSE; /* So that next time when user calls MatMatMult(E,F,MAT_REUSE_MATRIX,..,C), we still do numeric */ 1024076ba34aSJunchao Zhang ab = mmdata->mmAB; 1025076ba34aSJunchao Zhang atb = mmdata->mmAtB; 1026076ba34aSJunchao Zhang if (ab) { 1027076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(ab->C1->product->data)->reusesym = PETSC_FALSE; 1028076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(ab->C2->product->data)->reusesym = PETSC_FALSE; 1029076ba34aSJunchao Zhang } 1030076ba34aSJunchao Zhang if (atb) { 1031076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(atb->C1->product->data)->reusesym = PETSC_FALSE; 1032076ba34aSJunchao Zhang static_cast<MatProductData_SeqAIJKokkos*>(atb->C2->product->data)->reusesym = PETSC_FALSE; 1033076ba34aSJunchao Zhang } 1034076ba34aSJunchao Zhang PetscFunctionReturn(0); 1035076ba34aSJunchao Zhang } 1036076ba34aSJunchao Zhang 1037076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 1038076ba34aSJunchao Zhang ab = mmdata->mmAB; 1039076ba34aSJunchao Zhang /* C1 = Ad * B_local */ 10402c71b3e2SJacob Faibussowitsch PetscCheckFalse(!ab->C1->ops->productnumeric || !ab->C2->ops->productnumeric,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing numeric op for MATPRODUCT_AB"); 1041076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_REUSE_MATRIX,NULL/*glob*/,&ab->B_local);CHKERRQ(ierr); 10422c71b3e2SJacob Faibussowitsch PetscCheckFalse(ab->C1->product->B != ab->B_local,PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AB, internal mat product matrix C1->B has unexpectedly changed"); 1043076ba34aSJunchao Zhang if (ab->C1->product->A != Ad) {ierr = MatProductReplaceMats(Ad,NULL,NULL,ab->C1);CHKERRQ(ierr);} 1044076ba34aSJunchao Zhang ierr = (*ab->C1->ops->productnumeric)(ab->C1);CHKERRQ(ierr); 1045076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosBcast(ab->B_local,MAT_REUSE_MATRIX,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,ab->sf, 1046076ba34aSJunchao Zhang ab->abuf,ab->rows,ab->rowoffset,ab->B_other);CHKERRQ(ierr); 1047076ba34aSJunchao Zhang /* C2 = Ao * B_other */ 10482c71b3e2SJacob Faibussowitsch PetscCheckFalse(ab->C2->product->B != ab->B_other,PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AB, internal mat product matrix C2->B has unexpectedly changed"); 1049076ba34aSJunchao Zhang if (ab->C1->product->A != Ao) {ierr = MatProductReplaceMats(Ao,NULL,NULL,ab->C2);CHKERRQ(ierr);} 1050076ba34aSJunchao Zhang ierr = (*ab->C2->ops->productnumeric)(ab->C2);CHKERRQ(ierr); 1051076ba34aSJunchao Zhang /* C = C1_global + C2_global */ 1052076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&ab->kh,one,ab->C1_global,one,ab->C2_global,ab->C_global); 1053076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(ab); 1054076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 1055076ba34aSJunchao Zhang atb = mmdata->mmAtB; 10562c71b3e2SJacob Faibussowitsch PetscCheckFalse(!atb->C1->ops->productnumeric || !atb->C2->ops->productnumeric,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing numeric op for MATPRODUCT_AtB"); 1057076ba34aSJunchao Zhang /* C1 = Ad^t * B_local */ 1058076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_REUSE_MATRIX,NULL/*glob*/,&atb->B_local);CHKERRQ(ierr); 10592c71b3e2SJacob Faibussowitsch PetscCheckFalse(atb->C1->product->B != atb->B_local,PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AtB, internal mat product matrix C1->B has unexpectedly changed"); 1060076ba34aSJunchao Zhang if (atb->C1->product->A != Ad) {ierr = MatProductReplaceMats(Ad,NULL,NULL,atb->C1);CHKERRQ(ierr);} 1061076ba34aSJunchao Zhang ierr = (*atb->C1->ops->productnumeric)(atb->C1);CHKERRQ(ierr); 1062076ba34aSJunchao Zhang 1063076ba34aSJunchao Zhang /* C2 = Ao^t * B_local */ 10642c71b3e2SJacob Faibussowitsch PetscCheckFalse(atb->C2->product->B != atb->B_local,PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_AtB, internal mat product matrix C2->B has unexpectedly changed"); 1065076ba34aSJunchao Zhang if (atb->C2->product->A != Ao) {ierr = MatProductReplaceMats(Ao,NULL,NULL,atb->C2);CHKERRQ(ierr);} 1066076ba34aSJunchao Zhang ierr = (*atb->C2->ops->productnumeric)(atb->C2);CHKERRQ(ierr); 1067076ba34aSJunchao Zhang /* Form C2_global */ 1068076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosReduce(atb->C2,MAT_REUSE_MATRIX,PETSC_TRUE,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,atb->sf, 1069076ba34aSJunchao Zhang atb->abuf,atb->srcrowoffset,atb->dstrowoffset,atb->C2_global);CHKERRQ(ierr); 1070076ba34aSJunchao Zhang /* C = C1_global + C2_global */ 1071076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&atb->kh,one,atb->C1_global,one,atb->C2_global,atb->C_global); 1072076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1073076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { /* BtAB */ 1074076ba34aSJunchao Zhang ab = mmdata->mmAB; 1075076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_REUSE_MATRIX,NULL/*glob*/,&ab->B_local);CHKERRQ(ierr); 1076076ba34aSJunchao Zhang 1077076ba34aSJunchao Zhang /* ab->C1 = Ad * B_local */ 10782c71b3e2SJacob Faibussowitsch PetscCheckFalse(ab->C1->product->B != ab->B_local,PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_PtAP, internal mat product matrix ab->C1->B has unexpectedly changed"); 1079076ba34aSJunchao Zhang if (ab->C1->product->A != Ad) {ierr = MatProductReplaceMats(Ad,NULL,NULL,ab->C1);CHKERRQ(ierr);} 1080076ba34aSJunchao Zhang ierr = (*ab->C1->ops->productnumeric)(ab->C1);CHKERRQ(ierr); 1081076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosBcast(ab->B_local,MAT_REUSE_MATRIX,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,ab->sf, 1082076ba34aSJunchao Zhang ab->abuf,ab->rows,ab->rowoffset,ab->B_other);CHKERRQ(ierr); 1083076ba34aSJunchao Zhang /* ab->C2 = Ao * B_other */ 1084076ba34aSJunchao Zhang if (ab->C2->product->A != Ao) {ierr = MatProductReplaceMats(Ao,NULL,NULL,ab->C2);CHKERRQ(ierr);} 1085076ba34aSJunchao Zhang ierr = (*ab->C2->ops->productnumeric)(ab->C2);CHKERRQ(ierr); /* C2 = Ao * B_other */ 1086076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&ab->kh,one,ab->C1_global,one,ab->C2_global,ab->C_global); 1087076ba34aSJunchao Zhang 1088076ba34aSJunchao Zhang /* atb->C1 = Bd^t * ab->C_petsc */ 1089076ba34aSJunchao Zhang atb = mmdata->mmAtB; 10902c71b3e2SJacob Faibussowitsch PetscCheckFalse(atb->C1->product->B != ab->C_petsc,PETSC_COMM_SELF,PETSC_ERR_PLIB,"In MATPRODUCT_PtAP, internal mat product matrix atb->C1->B has unexpectedly changed"); 1091076ba34aSJunchao Zhang if (atb->C1->product->A != Bd) {ierr = MatProductReplaceMats(Bd,NULL,NULL,atb->C1);CHKERRQ(ierr);} 1092076ba34aSJunchao Zhang ierr = (*atb->C1->ops->productnumeric)(atb->C1);CHKERRQ(ierr); 1093076ba34aSJunchao Zhang /* atb->C2 = Bo^t * ab->C_petsc */ 1094076ba34aSJunchao Zhang if (atb->C2->product->A != Bo) {ierr = MatProductReplaceMats(Bo,NULL,NULL,atb->C2);CHKERRQ(ierr);} 1095076ba34aSJunchao Zhang ierr = (*atb->C2->ops->productnumeric)(atb->C2);CHKERRQ(ierr); 1096076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosReduce(atb->C2,MAT_REUSE_MATRIX,PETSC_FALSE,0/*N*/,MatColIdxKokkosView()/*l2g*/,NULL/*ownerSF*/,atb->sf, 1097076ba34aSJunchao Zhang atb->abuf,atb->srcrowoffset,atb->dstrowoffset,atb->C2_global);CHKERRQ(ierr); 1098076ba34aSJunchao Zhang KokkosSparse::spadd_numeric(&atb->kh,one,atb->C1_global,one,atb->C2_global,atb->C_global); 1099076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1100076ba34aSJunchao Zhang } 1101076ba34aSJunchao Zhang /* Split C_global to form C */ 1102076ba34aSJunchao Zhang ierr = MatSetMPIAIJKokkosWithGlobalCSRMatrix(C,MAT_REUSE_MATRIX,mm->C_global,mm->Cdstart);CHKERRQ(ierr); 1103076ba34aSJunchao Zhang PetscFunctionReturn(0); 1104076ba34aSJunchao Zhang } 1105076ba34aSJunchao Zhang 1106076ba34aSJunchao Zhang PetscErrorCode MatProductSymbolic_MPIAIJKokkos(Mat C) 1107076ba34aSJunchao Zhang { 1108076ba34aSJunchao Zhang PetscErrorCode ierr; 1109076ba34aSJunchao Zhang Mat A,B; 1110076ba34aSJunchao Zhang Mat_Product *product = C->product; 1111076ba34aSJunchao Zhang MatProductType ptype; 1112076ba34aSJunchao Zhang MatProductData_MPIAIJKokkos *mmdata; 1113076ba34aSJunchao Zhang MatMatStruct *mm = NULL; 1114076ba34aSJunchao Zhang IS glob = NULL; 1115076ba34aSJunchao Zhang const PetscInt *garray; 1116076ba34aSJunchao Zhang PetscInt m,n,M,N,sz; 1117076ba34aSJunchao Zhang ConstMatColIdxKokkosView l2g; /* map local col ids to global ones */ 1118076ba34aSJunchao Zhang 1119076ba34aSJunchao Zhang PetscFunctionBegin; 1120076ba34aSJunchao Zhang MatCheckProduct(C,1); 11212c71b3e2SJacob Faibussowitsch PetscCheckFalse(product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 1122076ba34aSJunchao Zhang ptype = product->type; 1123076ba34aSJunchao Zhang A = product->A; 1124076ba34aSJunchao Zhang B = product->B; 1125076ba34aSJunchao Zhang 1126076ba34aSJunchao Zhang switch (ptype) { 1127076ba34aSJunchao Zhang case MATPRODUCT_AB: m = A->rmap->n; n = B->cmap->n; M = A->rmap->N; N = B->cmap->N; break; 1128076ba34aSJunchao Zhang case MATPRODUCT_AtB: m = A->cmap->n; n = B->cmap->n; M = A->cmap->N; N = B->cmap->N; break; 1129076ba34aSJunchao Zhang case MATPRODUCT_PtAP: m = B->cmap->n; n = B->cmap->n; M = B->cmap->N; N = B->cmap->N; break; /* BtAB */ 113098921bdaSJacob Faibussowitsch default: SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Not for product type %s",MatProductTypes[ptype]); 1131076ba34aSJunchao Zhang } 1132076ba34aSJunchao Zhang 1133076ba34aSJunchao Zhang ierr = MatSetSizes(C,m,n,M,N);CHKERRQ(ierr); 1134076ba34aSJunchao Zhang ierr = PetscLayoutSetUp(C->rmap);CHKERRQ(ierr); 1135076ba34aSJunchao Zhang ierr = PetscLayoutSetUp(C->cmap);CHKERRQ(ierr); 1136076ba34aSJunchao Zhang ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 1137076ba34aSJunchao Zhang 1138076ba34aSJunchao Zhang mmdata = new MatProductData_MPIAIJKokkos(); 1139076ba34aSJunchao Zhang mmdata->reusesym = product->api_user; 1140076ba34aSJunchao Zhang 1141076ba34aSJunchao Zhang if (ptype == MATPRODUCT_AB) { 1142076ba34aSJunchao Zhang mmdata->mmAB = new MatMatStruct_AB(); 1143076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AB(product,A,B,mmdata->mmAB);CHKERRQ(ierr); 1144076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(mmdata->mmAB); 1145076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_AtB) { 1146076ba34aSJunchao Zhang mmdata->mmAtB = new MatMatStruct_AtB(); 1147076ba34aSJunchao Zhang auto atb = mmdata->mmAtB; 1148076ba34aSJunchao Zhang ierr = MatMPIAIJGetLocalMatMerge(B,MAT_INITIAL_MATRIX,&glob,&atb->B_local);CHKERRQ(ierr); 1149076ba34aSJunchao Zhang ierr = ISGetIndices(glob,&garray);CHKERRQ(ierr); 1150076ba34aSJunchao Zhang ierr = ISGetSize(glob,&sz);CHKERRQ(ierr); 1151076ba34aSJunchao Zhang l2g = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),ConstMatColIdxKokkosViewHost(garray,sz)); 1152076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AtB(product,A,atb->B_local,PETSC_TRUE,N,l2g,atb);CHKERRQ(ierr); 1153076ba34aSJunchao Zhang ierr = ISRestoreIndices(glob,&garray);CHKERRQ(ierr); 1154076ba34aSJunchao Zhang ierr = ISDestroy(&glob);CHKERRQ(ierr); 1155076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1156076ba34aSJunchao Zhang } else if (ptype == MATPRODUCT_PtAP) { /* BtAB */ 1157076ba34aSJunchao Zhang mmdata->mmAB = new MatMatStruct_AB(); /* tmp=A*B */ 1158076ba34aSJunchao Zhang mmdata->mmAtB = new MatMatStruct_AtB(); /* C=B^t*tmp */ 1159076ba34aSJunchao Zhang auto ab = mmdata->mmAB; 1160076ba34aSJunchao Zhang auto atb = mmdata->mmAtB; 1161076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AB(product,A,B,ab);CHKERRQ(ierr); 1162076ba34aSJunchao Zhang auto tmp = new Mat_SeqAIJKokkos(ab->C_global); /* Memory will be owned by ab->C_petsc */ 1163076ba34aSJunchao Zhang ierr = MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF,tmp,&ab->C_petsc);CHKERRQ(ierr); 1164076ba34aSJunchao Zhang ierr = MatProductSymbolic_MPIAIJKokkos_AtB(product,B,ab->C_petsc,PETSC_FALSE,N,l2g/*not used*/,atb);CHKERRQ(ierr); 1165076ba34aSJunchao Zhang mm = static_cast<MatMatStruct*>(atb); 1166076ba34aSJunchao Zhang } 1167076ba34aSJunchao Zhang /* Split the C_global into petsc A, B format */ 1168076ba34aSJunchao Zhang ierr = MatSetMPIAIJKokkosWithGlobalCSRMatrix(C,MAT_INITIAL_MATRIX,mm->C_global,mm->Cdstart);CHKERRQ(ierr); 1169076ba34aSJunchao Zhang C->product->data = mmdata; 1170076ba34aSJunchao Zhang C->product->destroy = MatProductDataDestroy_MPIAIJKokkos; 1171076ba34aSJunchao Zhang C->ops->productnumeric = MatProductNumeric_MPIAIJKokkos; 1172076ba34aSJunchao Zhang PetscFunctionReturn(0); 1173076ba34aSJunchao Zhang } 1174076ba34aSJunchao Zhang 1175076ba34aSJunchao Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJKokkos(Mat mat) 1176076ba34aSJunchao Zhang { 1177076ba34aSJunchao Zhang PetscErrorCode ierr; 1178076ba34aSJunchao Zhang Mat_Product *product = mat->product; 1179076ba34aSJunchao Zhang PetscBool match = PETSC_FALSE; 1180076ba34aSJunchao Zhang PetscBool usecpu = PETSC_FALSE; 1181076ba34aSJunchao Zhang 1182076ba34aSJunchao Zhang PetscFunctionBegin; 1183076ba34aSJunchao Zhang MatCheckProduct(mat,1); 1184076ba34aSJunchao Zhang if (!product->A->boundtocpu && !product->B->boundtocpu) { 1185076ba34aSJunchao Zhang ierr = PetscObjectTypeCompare((PetscObject)product->B,((PetscObject)product->A)->type_name,&match);CHKERRQ(ierr); 1186076ba34aSJunchao Zhang } 1187076ba34aSJunchao Zhang if (match) { /* we can always fallback to the CPU if requested */ 1188076ba34aSJunchao Zhang switch (product->type) { 1189076ba34aSJunchao Zhang case MATPRODUCT_AB: 1190076ba34aSJunchao Zhang if (product->api_user) { 1191076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatMatMult","Mat");CHKERRQ(ierr); 1192076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matmatmult_backend_cpu","Use CPU code","MatMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1193076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1194076ba34aSJunchao Zhang } else { 1195076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatProduct_AB","Mat");CHKERRQ(ierr); 11963e662e0bSHong Zhang ierr = PetscOptionsBool("-mat_product_algorithm_backend_cpu","Use CPU code","MatMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1197076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1198076ba34aSJunchao Zhang } 1199076ba34aSJunchao Zhang break; 1200076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1201076ba34aSJunchao Zhang if (product->api_user) { 1202076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatTransposeMatMult","Mat");CHKERRQ(ierr); 1203076ba34aSJunchao Zhang ierr = PetscOptionsBool("-mattransposematmult_backend_cpu","Use CPU code","MatTransposeMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1204076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1205076ba34aSJunchao Zhang } else { 1206076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatProduct_AtB","Mat");CHKERRQ(ierr); 12073e662e0bSHong Zhang ierr = PetscOptionsBool("-mat_product_algorithm_backend_cpu","Use CPU code","MatTransposeMatMult",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1208076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1209076ba34aSJunchao Zhang } 1210076ba34aSJunchao Zhang break; 1211076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1212076ba34aSJunchao Zhang if (product->api_user) { 1213076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatPtAP","Mat");CHKERRQ(ierr); 1214076ba34aSJunchao Zhang ierr = PetscOptionsBool("-matptap_backend_cpu","Use CPU code","MatPtAP",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1215076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1216076ba34aSJunchao Zhang } else { 1217076ba34aSJunchao Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)mat),((PetscObject)mat)->prefix,"MatProduct_PtAP","Mat");CHKERRQ(ierr); 12183e662e0bSHong Zhang ierr = PetscOptionsBool("-mat_product_algorithm_backend_cpu","Use CPU code","MatPtAP",usecpu,&usecpu,NULL);CHKERRQ(ierr); 1219076ba34aSJunchao Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 1220076ba34aSJunchao Zhang } 1221076ba34aSJunchao Zhang break; 1222076ba34aSJunchao Zhang default: 1223076ba34aSJunchao Zhang break; 1224076ba34aSJunchao Zhang } 1225076ba34aSJunchao Zhang match = (PetscBool)!usecpu; 1226076ba34aSJunchao Zhang } 1227076ba34aSJunchao Zhang if (match) { 1228076ba34aSJunchao Zhang switch (product->type) { 1229076ba34aSJunchao Zhang case MATPRODUCT_AB: 1230076ba34aSJunchao Zhang case MATPRODUCT_AtB: 1231076ba34aSJunchao Zhang case MATPRODUCT_PtAP: 1232076ba34aSJunchao Zhang mat->ops->productsymbolic = MatProductSymbolic_MPIAIJKokkos; 1233076ba34aSJunchao Zhang break; 1234076ba34aSJunchao Zhang default: 1235076ba34aSJunchao Zhang break; 1236076ba34aSJunchao Zhang } 1237076ba34aSJunchao Zhang } 1238076ba34aSJunchao Zhang /* fallback to MPIAIJ ops */ 1239076ba34aSJunchao Zhang if (!mat->ops->productsymbolic) { 1240076ba34aSJunchao Zhang ierr = MatProductSetFromOptions_MPIAIJ(mat);CHKERRQ(ierr); 1241076ba34aSJunchao Zhang } 1242076ba34aSJunchao Zhang PetscFunctionReturn(0); 1243076ba34aSJunchao Zhang } 1244076ba34aSJunchao Zhang 124582a78a4eSJed Brown static PetscErrorCode MatSetPreallocationCOO_MPIAIJKokkos(Mat mat, PetscCount coo_n, const PetscInt coo_i[], const PetscInt coo_j[]) 124642550becSJunchao Zhang { 1247394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)mat->data; 1248*cbc6b225SStefano Zampini Mat_MPIAIJKokkos *mpikok; 1249*cbc6b225SStefano Zampini PetscErrorCode ierr; 125042550becSJunchao Zhang 125142550becSJunchao Zhang PetscFunctionBegin; 1252*cbc6b225SStefano Zampini ierr = MatSetPreallocationCOO_MPIAIJ(mat,coo_n,coo_i,coo_j);CHKERRQ(ierr); 1253*cbc6b225SStefano Zampini mat->preallocated = PETSC_TRUE; 1254*cbc6b225SStefano Zampini ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1255*cbc6b225SStefano Zampini ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1256*cbc6b225SStefano Zampini ierr = MatZeroEntries(mat);CHKERRQ(ierr); 1257*cbc6b225SStefano Zampini mpikok = static_cast<Mat_MPIAIJKokkos*>(mpiaij->spptr); 1258*cbc6b225SStefano Zampini delete mpikok; 1259394ed5ebSJunchao Zhang mpiaij->spptr = new Mat_MPIAIJKokkos(mpiaij); 126042550becSJunchao Zhang PetscFunctionReturn(0); 126142550becSJunchao Zhang } 126242550becSJunchao Zhang 126342550becSJunchao Zhang static PetscErrorCode MatSetValuesCOO_MPIAIJKokkos(Mat mat,const PetscScalar v[],InsertMode imode) 126442550becSJunchao Zhang { 126542550becSJunchao Zhang PetscErrorCode ierr; 1266394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = static_cast<Mat_MPIAIJ*>(mat->data); 126742550becSJunchao Zhang Mat_MPIAIJKokkos *mpikok = static_cast<Mat_MPIAIJKokkos*>(mpiaij->spptr); 126842550becSJunchao Zhang Mat A = mpiaij->A,B = mpiaij->B; 1269394ed5ebSJunchao Zhang PetscCount Annz1 = mpiaij->Annz1,Annz2 = mpiaij->Annz2,Bnnz1 = mpiaij->Bnnz1,Bnnz2 = mpiaij->Bnnz2; 127042550becSJunchao Zhang MatScalarKokkosView Aa,Ba; 1271394ed5ebSJunchao Zhang MatScalarKokkosView v1; 127242550becSJunchao Zhang MatScalarKokkosView& vsend = mpikok->sendbuf_d; 127342550becSJunchao Zhang const MatScalarKokkosView& v2 = mpikok->recvbuf_d; 1274394ed5ebSJunchao Zhang const PetscCountKokkosView& Ajmap1 = mpikok->Ajmap1_d,Ajmap2 = mpikok->Ajmap2_d,Aimap1 = mpikok->Aimap1_d,Aimap2 = mpikok->Aimap2_d; 1275394ed5ebSJunchao Zhang const PetscCountKokkosView& Bjmap1 = mpikok->Bjmap1_d,Bjmap2 = mpikok->Bjmap2_d,Bimap1 = mpikok->Bimap1_d,Bimap2 = mpikok->Bimap2_d; 1276394ed5ebSJunchao Zhang const PetscCountKokkosView& Aperm1 = mpikok->Aperm1_d,Aperm2 = mpikok->Aperm2_d,Bperm1 = mpikok->Bperm1_d,Bperm2 = mpikok->Bperm2_d; 1277394ed5ebSJunchao Zhang const PetscCountKokkosView& Cperm1 = mpikok->Cperm1_d; 127842550becSJunchao Zhang PetscMemType memtype; 127942550becSJunchao Zhang 128042550becSJunchao Zhang PetscFunctionBegin; 1281394ed5ebSJunchao Zhang ierr = PetscGetMemType(v,&memtype);CHKERRQ(ierr); /* Return PETSC_MEMTYPE_HOST when v is NULL */ 128242550becSJunchao Zhang if (PetscMemTypeHost(memtype)) { /* If user gave v[] in host, we need to copy it to device if any */ 1283394ed5ebSJunchao Zhang v1 = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(),MatScalarKokkosViewHost((PetscScalar*)v,mpiaij->coo_n)); 128442550becSJunchao Zhang } else { 1285394ed5ebSJunchao Zhang v1 = MatScalarKokkosView((PetscScalar*)v,mpiaij->coo_n); /* Directly use v[]'s memory */ 128642550becSJunchao Zhang } 128742550becSJunchao Zhang 128842550becSJunchao Zhang if (imode == INSERT_VALUES) { 1289394ed5ebSJunchao Zhang ierr = MatSeqAIJGetKokkosViewWrite(A,&Aa);CHKERRQ(ierr); /* write matrix values */ 1290394ed5ebSJunchao Zhang ierr = MatSeqAIJGetKokkosViewWrite(B,&Ba);CHKERRQ(ierr); 129142550becSJunchao Zhang Kokkos::deep_copy(Aa,0.0); /* Zero matrix values since INSERT_VALUES still requires summing replicated values in v[] */ 129242550becSJunchao Zhang Kokkos::deep_copy(Ba,0.0); 1293394ed5ebSJunchao Zhang } else { 1294394ed5ebSJunchao Zhang ierr = MatSeqAIJGetKokkosView(A,&Aa);CHKERRQ(ierr); /* read & write matrix values */ 1295394ed5ebSJunchao Zhang ierr = MatSeqAIJGetKokkosView(B,&Ba);CHKERRQ(ierr); 129642550becSJunchao Zhang } 129742550becSJunchao Zhang 129842550becSJunchao Zhang /* Pack entries to be sent to remote */ 1299394ed5ebSJunchao Zhang Kokkos::parallel_for(vsend.extent(0),KOKKOS_LAMBDA(const PetscCount i) {vsend(i) = v1(Cperm1(i));}); 130042550becSJunchao Zhang 130142550becSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 1302394ed5ebSJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(mpiaij->coo_sf,MPIU_SCALAR,PETSC_MEMTYPE_KOKKOS,vsend.data(),PETSC_MEMTYPE_KOKKOS,v2.data(),MPI_REPLACE);CHKERRQ(ierr); 130342550becSJunchao Zhang /* Add local entries to A and B */ 1304394ed5ebSJunchao Zhang Kokkos::parallel_for(Annz1,KOKKOS_LAMBDA(const PetscCount i) {for (PetscCount k=Ajmap1(i); k<Ajmap1(i+1); k++) Aa(Aimap1(i)) += v1(Aperm1(k));}); 1305394ed5ebSJunchao Zhang Kokkos::parallel_for(Bnnz1,KOKKOS_LAMBDA(const PetscCount i) {for (PetscCount k=Bjmap1(i); k<Bjmap1(i+1); k++) Ba(Bimap1(i)) += v1(Bperm1(k));}); 1306394ed5ebSJunchao Zhang ierr = PetscSFReduceEnd(mpiaij->coo_sf,MPIU_SCALAR,vsend.data(),v2.data(),MPI_REPLACE);CHKERRQ(ierr); 130742550becSJunchao Zhang 130842550becSJunchao Zhang /* Add received remote entries to A and B */ 1309394ed5ebSJunchao Zhang Kokkos::parallel_for(Annz2,KOKKOS_LAMBDA(const PetscCount i) {for (PetscCount k=Ajmap2(i); k<Ajmap2(i+1); k++) Aa(Aimap2(i)) += v2(Aperm2(k));}); 1310394ed5ebSJunchao Zhang Kokkos::parallel_for(Bnnz2,KOKKOS_LAMBDA(const PetscCount i) {for (PetscCount k=Bjmap2(i); k<Bjmap2(i+1); k++) Ba(Bimap2(i)) += v2(Bperm2(k));}); 131142550becSJunchao Zhang 1312394ed5ebSJunchao Zhang if (imode == INSERT_VALUES) { 1313394ed5ebSJunchao Zhang ierr = MatSeqAIJRestoreKokkosViewWrite(A,&Aa);CHKERRQ(ierr); /* Increase A & B's state etc. */ 1314394ed5ebSJunchao Zhang ierr = MatSeqAIJRestoreKokkosViewWrite(B,&Ba);CHKERRQ(ierr); 1315394ed5ebSJunchao Zhang } else { 131642550becSJunchao Zhang ierr = MatSeqAIJRestoreKokkosView(A,&Aa);CHKERRQ(ierr); 131742550becSJunchao Zhang ierr = MatSeqAIJRestoreKokkosView(B,&Ba);CHKERRQ(ierr); 1318394ed5ebSJunchao Zhang } 131942550becSJunchao Zhang PetscFunctionReturn(0); 132042550becSJunchao Zhang } 132142550becSJunchao Zhang 1322076ba34aSJunchao Zhang PetscErrorCode MatDestroy_MPIAIJKokkos(Mat A) 1323076ba34aSJunchao Zhang { 1324076ba34aSJunchao Zhang PetscErrorCode ierr; 132542550becSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*)A->data; 1326076ba34aSJunchao Zhang 1327076ba34aSJunchao Zhang PetscFunctionBegin; 1328076ba34aSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1329076ba34aSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJGetLocalMatMerge_C",NULL);CHKERRQ(ierr); 133042550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetPreallocationCOO_C", NULL);CHKERRQ(ierr); 133142550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)A,"MatSetValuesCOO_C", NULL);CHKERRQ(ierr); 133242550becSJunchao Zhang delete (Mat_MPIAIJKokkos*)mpiaij->spptr; 1333076ba34aSJunchao Zhang ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr); 1334076ba34aSJunchao Zhang PetscFunctionReturn(0); 1335076ba34aSJunchao Zhang } 1336076ba34aSJunchao Zhang 13378c3ff71bSJunchao Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat A, MatType mtype, MatReuse reuse, Mat* newmat) 13388c3ff71bSJunchao Zhang { 13398c3ff71bSJunchao Zhang PetscErrorCode ierr; 13408c3ff71bSJunchao Zhang Mat B; 1341076ba34aSJunchao Zhang Mat_MPIAIJ *a; 13428c3ff71bSJunchao Zhang 13438c3ff71bSJunchao Zhang PetscFunctionBegin; 13448c3ff71bSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 13458c3ff71bSJunchao Zhang ierr = MatDuplicate(A,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 13468c3ff71bSJunchao Zhang } else if (reuse == MAT_REUSE_MATRIX) { 13478c3ff71bSJunchao Zhang ierr = MatCopy(A,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 13488c3ff71bSJunchao Zhang } 13498c3ff71bSJunchao Zhang B = *newmat; 13508c3ff71bSJunchao Zhang 13516f3d89d0SStefano Zampini B->boundtocpu = PETSC_FALSE; 13528c3ff71bSJunchao Zhang ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 13538c3ff71bSJunchao Zhang ierr = PetscStrallocpy(VECKOKKOS,&B->defaultvectype);CHKERRQ(ierr); 13543d0639e7SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIAIJKOKKOS);CHKERRQ(ierr); 13558c3ff71bSJunchao Zhang 1356076ba34aSJunchao Zhang a = static_cast<Mat_MPIAIJ*>(A->data); 1357076ba34aSJunchao Zhang if (a->A) {ierr = MatSetType(a->A,MATSEQAIJKOKKOS);CHKERRQ(ierr);} 1358076ba34aSJunchao Zhang if (a->B) {ierr = MatSetType(a->B,MATSEQAIJKOKKOS);CHKERRQ(ierr);} 1359076ba34aSJunchao Zhang if (a->lvec) {ierr = VecSetType(a->lvec,VECSEQKOKKOS);CHKERRQ(ierr);} 1360076ba34aSJunchao Zhang 13618c3ff71bSJunchao Zhang B->ops->assemblyend = MatAssemblyEnd_MPIAIJKokkos; 13628c3ff71bSJunchao Zhang B->ops->mult = MatMult_MPIAIJKokkos; 13638c3ff71bSJunchao Zhang B->ops->multadd = MatMultAdd_MPIAIJKokkos; 13648c3ff71bSJunchao Zhang B->ops->multtranspose = MatMultTranspose_MPIAIJKokkos; 1365076ba34aSJunchao Zhang B->ops->productsetfromoptions = MatProductSetFromOptions_MPIAIJKokkos; 1366076ba34aSJunchao Zhang B->ops->destroy = MatDestroy_MPIAIJKokkos; 13678c3ff71bSJunchao Zhang 13683d0639e7SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIAIJSetPreallocation_C",MatMPIAIJSetPreallocation_MPIAIJKokkos);CHKERRQ(ierr); 136942550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIAIJGetLocalMatMerge_C",MatMPIAIJGetLocalMatMerge_MPIAIJKokkos);CHKERRQ(ierr); 137042550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJKokkos);CHKERRQ(ierr); 137142550becSJunchao Zhang ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJKokkos);CHKERRQ(ierr); 13728c3ff71bSJunchao Zhang PetscFunctionReturn(0); 13738c3ff71bSJunchao Zhang } 13743f3ba80aSJunchao Zhang /*MC 13753f3ba80aSJunchao Zhang MATSMPIAIJKOKKOS - MATAIJKOKKOS = "(mpi)aijkokkos" - A matrix type to be used for sparse matrices with Kokkos 13768c3ff71bSJunchao Zhang 13773f3ba80aSJunchao Zhang A matrix type type using Kokkos-Kernels CrsMatrix type for portability across different device types 13783f3ba80aSJunchao Zhang 13793f3ba80aSJunchao Zhang Options Database Keys: 13803f3ba80aSJunchao Zhang . -mat_type aijkokkos - sets the matrix type to "aijkokkos" during a call to MatSetFromOptions() 13813f3ba80aSJunchao Zhang 13823f3ba80aSJunchao Zhang Level: beginner 13833f3ba80aSJunchao Zhang 13843f3ba80aSJunchao Zhang .seealso: MatCreateAIJKokkos(), MATSEQAIJKOKKOS 13853f3ba80aSJunchao Zhang M*/ 13868c3ff71bSJunchao Zhang PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJKokkos(Mat A) 13878c3ff71bSJunchao Zhang { 13888c3ff71bSJunchao Zhang PetscErrorCode ierr; 13898c3ff71bSJunchao Zhang 13908c3ff71bSJunchao Zhang PetscFunctionBegin; 13918c3ff71bSJunchao Zhang ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr); 13928c3ff71bSJunchao Zhang ierr = MatCreate_MPIAIJ(A);CHKERRQ(ierr); 13938c3ff71bSJunchao Zhang ierr = MatConvert_MPIAIJ_MPIAIJKokkos(A,MATMPIAIJKOKKOS,MAT_INPLACE_MATRIX,&A);CHKERRQ(ierr); 13948c3ff71bSJunchao Zhang PetscFunctionReturn(0); 13958c3ff71bSJunchao Zhang } 13968c3ff71bSJunchao Zhang 13978c3ff71bSJunchao Zhang /*@C 13988c3ff71bSJunchao Zhang MatCreateAIJKokkos - Creates a sparse matrix in AIJ (compressed row) format 13998c3ff71bSJunchao Zhang (the default parallel PETSc format). This matrix will ultimately pushed down 14008c3ff71bSJunchao Zhang to Kokkos for calculations. For good matrix 14018c3ff71bSJunchao Zhang assembly performance the user should preallocate the matrix storage by setting 14028c3ff71bSJunchao Zhang the parameter nz (or the array nnz). By setting these parameters accurately, 14038c3ff71bSJunchao Zhang performance during matrix assembly can be increased by more than a factor of 50. 14048c3ff71bSJunchao Zhang 14058c3ff71bSJunchao Zhang Collective 14068c3ff71bSJunchao Zhang 14078c3ff71bSJunchao Zhang Input Parameters: 14088c3ff71bSJunchao Zhang + comm - MPI communicator, set to PETSC_COMM_SELF 14098c3ff71bSJunchao Zhang . m - number of rows 14108c3ff71bSJunchao Zhang . n - number of columns 14118c3ff71bSJunchao Zhang . nz - number of nonzeros per row (same for all rows) 14128c3ff71bSJunchao Zhang - nnz - array containing the number of nonzeros in the various rows 14138c3ff71bSJunchao Zhang (possibly different for each row) or NULL 14148c3ff71bSJunchao Zhang 14158c3ff71bSJunchao Zhang Output Parameter: 14168c3ff71bSJunchao Zhang . A - the matrix 14178c3ff71bSJunchao Zhang 14188c3ff71bSJunchao Zhang It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 14198c3ff71bSJunchao Zhang MatXXXXSetPreallocation() paradigm instead of this routine directly. 14208c3ff71bSJunchao Zhang [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 14218c3ff71bSJunchao Zhang 14228c3ff71bSJunchao Zhang Notes: 14238c3ff71bSJunchao Zhang If nnz is given then nz is ignored 14248c3ff71bSJunchao Zhang 14258c3ff71bSJunchao Zhang The AIJ format (also called the Yale sparse matrix format or 14268c3ff71bSJunchao Zhang compressed row storage), is fully compatible with standard Fortran 77 14278c3ff71bSJunchao Zhang storage. That is, the stored row and column indices can begin at 14288c3ff71bSJunchao Zhang either one (as in Fortran) or zero. See the users' manual for details. 14298c3ff71bSJunchao Zhang 14308c3ff71bSJunchao Zhang Specify the preallocated storage with either nz or nnz (not both). 14318c3ff71bSJunchao Zhang Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 14328c3ff71bSJunchao Zhang allocation. For large problems you MUST preallocate memory or you 14338c3ff71bSJunchao Zhang will get TERRIBLE performance, see the users' manual chapter on matrices. 14348c3ff71bSJunchao Zhang 14358c3ff71bSJunchao Zhang By default, this format uses inodes (identical nodes) when possible, to 14368c3ff71bSJunchao Zhang improve numerical efficiency of matrix-vector products and solves. We 14378c3ff71bSJunchao Zhang search for consecutive rows with the same nonzero structure, thereby 14388c3ff71bSJunchao Zhang reusing matrix information to achieve increased efficiency. 14398c3ff71bSJunchao Zhang 14408c3ff71bSJunchao Zhang Level: intermediate 14418c3ff71bSJunchao Zhang 14428c3ff71bSJunchao Zhang .seealso: MatCreate(), MatCreateAIJ(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ(), MATMPIAIJKOKKOS, MATAIJKokkos 14438c3ff71bSJunchao Zhang @*/ 14448c3ff71bSJunchao Zhang PetscErrorCode MatCreateAIJKokkos(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 14458c3ff71bSJunchao Zhang { 14468c3ff71bSJunchao Zhang PetscErrorCode ierr; 14478c3ff71bSJunchao Zhang PetscMPIInt size; 14488c3ff71bSJunchao Zhang 14498c3ff71bSJunchao Zhang PetscFunctionBegin; 14508c3ff71bSJunchao Zhang ierr = MatCreate(comm,A);CHKERRQ(ierr); 14518c3ff71bSJunchao Zhang ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1452ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 14538c3ff71bSJunchao Zhang if (size > 1) { 14548c3ff71bSJunchao Zhang ierr = MatSetType(*A,MATMPIAIJKOKKOS);CHKERRQ(ierr); 14558c3ff71bSJunchao Zhang ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 14568c3ff71bSJunchao Zhang } else { 14578c3ff71bSJunchao Zhang ierr = MatSetType(*A,MATSEQAIJKOKKOS);CHKERRQ(ierr); 14588c3ff71bSJunchao Zhang ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr); 14598c3ff71bSJunchao Zhang } 14608c3ff71bSJunchao Zhang PetscFunctionReturn(0); 14618c3ff71bSJunchao Zhang } 14628c3ff71bSJunchao Zhang 1463a587d139SMark // get GPU pointer to stripped down Mat. For both Seq and MPI Mat. 1464042217e8SBarry Smith PetscErrorCode MatKokkosGetDeviceMatWrite(Mat A, PetscSplitCSRDataStructure *B) 1465a587d139SMark { 1466a587d139SMark PetscMPIInt size,rank; 1467a587d139SMark MPI_Comm comm; 1468a587d139SMark PetscErrorCode ierr; 1469042217e8SBarry Smith PetscSplitCSRDataStructure d_mat=NULL; 1470a587d139SMark 1471a587d139SMark PetscFunctionBegin; 1472a587d139SMark ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 147355b25c41SPierre Jolivet ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 147455b25c41SPierre Jolivet ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 1475a587d139SMark if (size == 1) { 1476a587d139SMark ierr = MatSeqAIJKokkosGetDeviceMat(A,&d_mat);CHKERRQ(ierr); 1477fc76dfabSMark Adams ierr = MatSeqAIJKokkosModifyDevice(A);CHKERRQ(ierr); /* Since we are going to modify matrix values on device */ 1478a587d139SMark } else { 1479a587d139SMark Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 1480a587d139SMark ierr = MatSeqAIJKokkosGetDeviceMat(aij->A,&d_mat);CHKERRQ(ierr); 1481fc76dfabSMark Adams ierr = MatSeqAIJKokkosModifyDevice(aij->A);CHKERRQ(ierr); 1482fc76dfabSMark Adams ierr = MatSeqAIJKokkosModifyDevice(aij->B);CHKERRQ(ierr); 14832c71b3e2SJacob Faibussowitsch PetscCheck(A->nooffprocentries || aij->donotstash,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Device assembly does not currently support offproc values insertion. Use MatSetOption(A,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) or MatSetOption(A,MAT_IGNORE_OFF_PROC_ENTRIES,PETSC_TRUE)"); 1484a587d139SMark } 1485a587d139SMark // act like MatSetValues because not called on host 1486a587d139SMark if (A->assembled) { 1487a587d139SMark if (A->was_assembled) { 1488a587d139SMark ierr = PetscInfo(A,"Assemble more than once already\n");CHKERRQ(ierr); 1489a587d139SMark } 1490a587d139SMark A->was_assembled = PETSC_TRUE; // this is done (lazy) in MatAssemble but we are not calling it anymore - done in AIJ AssemblyEnd, need here? 1491a587d139SMark } else { 14927d3de750SJacob Faibussowitsch ierr = PetscInfo(A,"Warning !assemble ??? assembled=%" PetscInt_FMT "\n",A->assembled);CHKERRQ(ierr); 1493a587d139SMark } 1494a587d139SMark if (!d_mat) { 1495042217e8SBarry Smith struct _n_SplitCSRMat h_mat; /* host container */ 1496a587d139SMark Mat_SeqAIJKokkos *aijkokA; 1497a587d139SMark Mat_SeqAIJ *jaca; 1498a587d139SMark PetscInt n = A->rmap->n, nnz; 1499a587d139SMark Mat Amat; 1500042217e8SBarry Smith PetscInt *colmap; 1501042217e8SBarry Smith 1502042217e8SBarry Smith /* create and copy h_mat */ 150349b994a9SMark Adams h_mat.M = A->cmap->N; // use for debug build 1504a587d139SMark ierr = PetscInfo(A,"Create device matrix in Kokkos\n");CHKERRQ(ierr); 1505a587d139SMark if (size == 1) { 1506a587d139SMark Amat = A; 1507a587d139SMark jaca = (Mat_SeqAIJ*)A->data; 1508a587d139SMark h_mat.rstart = 0; h_mat.rend = A->rmap->n; 1509a587d139SMark h_mat.cstart = 0; h_mat.cend = A->cmap->n; 1510a587d139SMark h_mat.offdiag.i = h_mat.offdiag.j = NULL; 1511a587d139SMark h_mat.offdiag.a = NULL; 1512a587d139SMark aijkokA = static_cast<Mat_SeqAIJKokkos*>(A->spptr); 1513a587d139SMark } else { 1514a587d139SMark Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 1515a587d139SMark Mat_SeqAIJ *jacb = (Mat_SeqAIJ*)aij->B->data; 1516a587d139SMark PetscInt ii; 1517a587d139SMark Mat_SeqAIJKokkos *aijkokB; 1518042217e8SBarry Smith 1519a587d139SMark Amat = aij->A; 1520a587d139SMark aijkokA = static_cast<Mat_SeqAIJKokkos*>(aij->A->spptr); 1521a587d139SMark aijkokB = static_cast<Mat_SeqAIJKokkos*>(aij->B->spptr); 1522a587d139SMark jaca = (Mat_SeqAIJ*)aij->A->data; 15232c71b3e2SJacob Faibussowitsch PetscCheckFalse(aij->B->cmap->n && !aij->garray,comm,PETSC_ERR_PLIB,"MPIAIJ Matrix was assembled but is missing garray"); 15242c71b3e2SJacob Faibussowitsch PetscCheckFalse(aij->B->rmap->n != aij->A->rmap->n,comm,PETSC_ERR_SUP,"Only support aij->B->rmap->n == aij->A->rmap->n"); 1525a587d139SMark aij->donotstash = PETSC_TRUE; 1526a587d139SMark aij->A->nooffprocentries = aij->B->nooffprocentries = A->nooffprocentries = PETSC_TRUE; 1527a5b23f4aSJose E. Roman jaca->nonew = jacb->nonew = PETSC_TRUE; // no more disassembly 1528042217e8SBarry Smith ierr = PetscCalloc1(A->cmap->N,&colmap);CHKERRQ(ierr); 1529042217e8SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,(A->cmap->N)*sizeof(PetscInt));CHKERRQ(ierr); 1530042217e8SBarry Smith for (ii=0; ii<aij->B->cmap->n; ii++) colmap[aij->garray[ii]] = ii+1; 1531a587d139SMark // allocate B copy data 1532a587d139SMark h_mat.rstart = A->rmap->rstart; h_mat.rend = A->rmap->rend; 1533a587d139SMark h_mat.cstart = A->cmap->rstart; h_mat.cend = A->cmap->rend; 1534a587d139SMark nnz = jacb->i[n]; 1535a587d139SMark if (jacb->compressedrow.use) { 1536a587d139SMark const Kokkos::View<PetscInt*, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_i_k (jacb->i,n+1); 1537300d22a6SJunchao Zhang aijkokB->i_uncompressed_d = Kokkos::View<PetscInt*>(Kokkos::create_mirror(DefaultMemorySpace(),h_i_k)); 1538300d22a6SJunchao Zhang Kokkos::deep_copy (aijkokB->i_uncompressed_d, h_i_k); 1539300d22a6SJunchao Zhang h_mat.offdiag.i = aijkokB->i_uncompressed_d.data(); 1540a587d139SMark } else { 154199551766SMark Adams h_mat.offdiag.i = aijkokB->i_device_data(); 1542a587d139SMark } 154399551766SMark Adams h_mat.offdiag.j = aijkokB->j_device_data(); 1544076ba34aSJunchao Zhang h_mat.offdiag.a = aijkokB->a_device_data(); 1545a587d139SMark { 1546042217e8SBarry Smith Kokkos::View<PetscInt*, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_colmap_k (colmap,A->cmap->N); 1547300d22a6SJunchao Zhang aijkokB->colmap_d = Kokkos::View<PetscInt*>(Kokkos::create_mirror(DefaultMemorySpace(),h_colmap_k)); 1548300d22a6SJunchao Zhang Kokkos::deep_copy (aijkokB->colmap_d, h_colmap_k); 1549300d22a6SJunchao Zhang h_mat.colmap = aijkokB->colmap_d.data(); 1550042217e8SBarry Smith ierr = PetscFree(colmap);CHKERRQ(ierr); 1551a587d139SMark } 1552a587d139SMark h_mat.offdiag.ignorezeroentries = jacb->ignorezeroentries; 1553a587d139SMark h_mat.offdiag.n = n; 1554a587d139SMark } 1555a587d139SMark // allocate A copy data 1556a587d139SMark nnz = jaca->i[n]; 1557a587d139SMark h_mat.diag.n = n; 1558a587d139SMark h_mat.diag.ignorezeroentries = jaca->ignorezeroentries; 155955b25c41SPierre Jolivet ierr = MPI_Comm_rank(comm,&h_mat.rank);CHKERRMPI(ierr); 15602c71b3e2SJacob Faibussowitsch PetscCheckFalse(jaca->compressedrow.use,PETSC_COMM_SELF,PETSC_ERR_PLIB,"A does not suppport compressed row (todo)"); 1561042217e8SBarry Smith else { 156299551766SMark Adams h_mat.diag.i = aijkokA->i_device_data(); 1563a587d139SMark } 156499551766SMark Adams h_mat.diag.j = aijkokA->j_device_data(); 1565076ba34aSJunchao Zhang h_mat.diag.a = aijkokA->a_device_data(); 1566a587d139SMark // copy pointers and metdata to device 1567a587d139SMark ierr = MatSeqAIJKokkosSetDeviceMat(Amat,&h_mat);CHKERRQ(ierr); 1568a587d139SMark ierr = MatSeqAIJKokkosGetDeviceMat(Amat,&d_mat);CHKERRQ(ierr); 15697d3de750SJacob Faibussowitsch ierr = PetscInfo(A,"Create device Mat n=%" PetscInt_FMT " nnz=%" PetscInt_FMT "\n",h_mat.diag.n, nnz);CHKERRQ(ierr); 1570a587d139SMark } 1571a587d139SMark *B = d_mat; // return it, set it in Mat, and set it up 1572a587d139SMark A->assembled = PETSC_FALSE; // ready to write with matsetvalues - this done (lazy) in normal MatSetValues 1573a587d139SMark PetscFunctionReturn(0); 1574a587d139SMark } 1575076ba34aSJunchao Zhang 1576076ba34aSJunchao Zhang PETSC_INTERN PetscErrorCode MatSeqAIJKokkosGetOffloadMask(Mat A, const char **mask) 1577076ba34aSJunchao Zhang { 1578076ba34aSJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos*>(A->spptr); 1579076ba34aSJunchao Zhang 1580076ba34aSJunchao Zhang PetscFunctionBegin; 1581076ba34aSJunchao Zhang if (!aijkok) *mask = "AIJKOK_UNALLOCATED"; 1582076ba34aSJunchao Zhang else if (aijkok->a_dual.need_sync_host()) *mask = "PETSC_OFFLOAD_GPU"; 1583076ba34aSJunchao Zhang else if (aijkok->a_dual.need_sync_device()) *mask = "PETSC_OFFLOAD_CPU"; 1584076ba34aSJunchao Zhang else *mask = "PETSC_OFFLOAD_BOTH"; 1585076ba34aSJunchao Zhang PetscFunctionReturn(0); 1586076ba34aSJunchao Zhang } 1587076ba34aSJunchao Zhang 1588076ba34aSJunchao Zhang PETSC_INTERN PetscErrorCode MatAIJKokkosPrintOffloadMask(Mat A) 1589076ba34aSJunchao Zhang { 1590076ba34aSJunchao Zhang PetscErrorCode ierr; 1591076ba34aSJunchao Zhang PetscMPIInt size; 1592076ba34aSJunchao Zhang Mat Ad,Ao; 1593076ba34aSJunchao Zhang const char *amask,*bmask; 1594076ba34aSJunchao Zhang 1595076ba34aSJunchao Zhang PetscFunctionBegin; 1596076ba34aSJunchao Zhang ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr); 1597076ba34aSJunchao Zhang 1598076ba34aSJunchao Zhang if (size == 1) { 1599076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetOffloadMask(A,&amask);CHKERRQ(ierr); 1600076ba34aSJunchao Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"%s\n",amask);CHKERRQ(ierr); 1601076ba34aSJunchao Zhang } else { 1602076ba34aSJunchao Zhang Ad = ((Mat_MPIAIJ*)A->data)->A; 1603076ba34aSJunchao Zhang Ao = ((Mat_MPIAIJ*)A->data)->B; 1604076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetOffloadMask(Ad,&amask);CHKERRQ(ierr); 1605076ba34aSJunchao Zhang ierr = MatSeqAIJKokkosGetOffloadMask(Ao,&bmask);CHKERRQ(ierr); 1606076ba34aSJunchao Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"Diag : Off-diag = %s : %s\n",amask,bmask);CHKERRQ(ierr); 1607076ba34aSJunchao Zhang } 1608076ba34aSJunchao Zhang PetscFunctionReturn(0); 1609076ba34aSJunchao Zhang } 1610