1cb512458SBarry Smith #ifndef lint 2*0002213bSLois Curfman McInnes static char vcid[] = "$Id: mpiaij.c,v 1.91 1995/10/19 22:22:37 curfman Exp curfman $"; 3cb512458SBarry Smith #endif 48a729477SBarry Smith 51eb62cbbSBarry Smith #include "mpiaij.h" 68a729477SBarry Smith #include "vec/vecimpl.h" 7d6dfbf8fSBarry Smith #include "inline/spops.h" 88a729477SBarry Smith 99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column 109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 119e25ed09SBarry Smith storage of the matrix. This is done in a non scable way since the 129e25ed09SBarry Smith length of colmap equals the global matrix length. 139e25ed09SBarry Smith */ 14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat) 159e25ed09SBarry Smith { 1644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 17ec8511deSBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data; 18416022c9SBarry Smith int n = B->n,i,shift = B->indexshift; 19dbb450caSBarry Smith 2078b31e54SBarry Smith aij->colmap = (int *) PETSCMALLOC(aij->N*sizeof(int));CHKPTRQ(aij->colmap); 21464493b3SBarry Smith PLogObjectMemory(mat,aij->N*sizeof(int)); 22416022c9SBarry Smith PetscZero(aij->colmap,aij->N*sizeof(int)); 23dbb450caSBarry Smith for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i-shift; 249e25ed09SBarry Smith return 0; 259e25ed09SBarry Smith } 269e25ed09SBarry Smith 272493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat); 282493cbb0SBarry Smith 2951c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm) 30299609e3SLois Curfman McInnes { 31299609e3SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 32299609e3SLois Curfman McInnes int ierr; 3317699dbbSLois Curfman McInnes if (aij->size == 1) { 3451c98ccdSLois Curfman McInnes ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr); 3548d91487SBarry Smith } else SETERRQ(1,"MatGetReordering_MPIAIJ:not supported in parallel"); 36299609e3SLois Curfman McInnes return 0; 37299609e3SLois Curfman McInnes } 38299609e3SLois Curfman McInnes 392ee70a88SLois Curfman McInnes static int MatSetValues_MPIAIJ(Mat mat,int m,int *idxm,int n, 401eb62cbbSBarry Smith int *idxn,Scalar *v,InsertMode addv) 418a729477SBarry Smith { 4244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 43dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ*) aij->A->data; 441eb62cbbSBarry Smith int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 451eb62cbbSBarry Smith int cstart = aij->cstart, cend = aij->cend,row,col; 46dbb450caSBarry Smith int shift = C->indexshift; 478a729477SBarry Smith 4864119d58SLois Curfman McInnes if (aij->insertmode != NOT_SET_VALUES && aij->insertmode != addv) { 4948d91487SBarry Smith SETERRQ(1,"MatSetValues_MPIAIJ:Cannot mix inserts and adds"); 508a729477SBarry Smith } 511eb62cbbSBarry Smith aij->insertmode = addv; 528a729477SBarry Smith for ( i=0; i<m; i++ ) { 53bbb6d6a8SBarry Smith if (idxm[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row"); 54bbb6d6a8SBarry Smith if (idxm[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large"); 551eb62cbbSBarry Smith if (idxm[i] >= rstart && idxm[i] < rend) { 561eb62cbbSBarry Smith row = idxm[i] - rstart; 571eb62cbbSBarry Smith for ( j=0; j<n; j++ ) { 58bbb6d6a8SBarry Smith if (idxn[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column"); 59bbb6d6a8SBarry Smith if (idxn[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large"); 601eb62cbbSBarry Smith if (idxn[j] >= cstart && idxn[j] < cend){ 611eb62cbbSBarry Smith col = idxn[j] - cstart; 6278b31e54SBarry Smith ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 631eb62cbbSBarry Smith } 641eb62cbbSBarry Smith else { 65d6dfbf8fSBarry Smith if (aij->assembled) { 66b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 67dbb450caSBarry Smith col = aij->colmap[idxn[j]] + shift; 68ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 692493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 702493cbb0SBarry Smith col = idxn[j]; 71d6dfbf8fSBarry Smith } 729e25ed09SBarry Smith } 739e25ed09SBarry Smith else col = idxn[j]; 7478b31e54SBarry Smith ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 751eb62cbbSBarry Smith } 761eb62cbbSBarry Smith } 771eb62cbbSBarry Smith } 781eb62cbbSBarry Smith else { 79416022c9SBarry Smith ierr = StashValues_Private(&aij->stash,idxm[i],n,idxn,v+i*n,addv);CHKERRQ(ierr); 801eb62cbbSBarry Smith } 818a729477SBarry Smith } 828a729477SBarry Smith return 0; 838a729477SBarry Smith } 848a729477SBarry Smith 85fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode) 868a729477SBarry Smith { 8744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 88d6dfbf8fSBarry Smith MPI_Comm comm = mat->comm; 8917699dbbSLois Curfman McInnes int size = aij->size, *owners = aij->rowners; 9017699dbbSLois Curfman McInnes int rank = aij->rank,tag = mat->tag, *owner,*starts,count,ierr; 911eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 926abc6512SBarry Smith int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 931eb62cbbSBarry Smith InsertMode addv; 941eb62cbbSBarry Smith Scalar *rvalues,*svalues; 951eb62cbbSBarry Smith 961eb62cbbSBarry Smith /* make sure all processors are either in INSERTMODE or ADDMODE */ 97d65a2f8fSBarry Smith MPI_Allreduce(&aij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 98dbb450caSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 99bbb6d6a8SBarry Smith SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added"); 1001eb62cbbSBarry Smith } 1011eb62cbbSBarry Smith aij->insertmode = addv; /* in case this processor had no cache */ 1021eb62cbbSBarry Smith 1031eb62cbbSBarry Smith /* first count number of contributors to each processor */ 10417699dbbSLois Curfman McInnes nprocs = (int *) PETSCMALLOC( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 10517699dbbSLois Curfman McInnes PetscZero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 10678b31e54SBarry Smith owner = (int *) PETSCMALLOC( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 1071eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1081eb62cbbSBarry Smith idx = aij->stash.idx[i]; 10917699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 1101eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 1111eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; break; 1128a729477SBarry Smith } 1138a729477SBarry Smith } 1148a729477SBarry Smith } 11517699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 1161eb62cbbSBarry Smith 1171eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 11817699dbbSLois Curfman McInnes work = (int *) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(work); 11917699dbbSLois Curfman McInnes MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm); 12017699dbbSLois Curfman McInnes nreceives = work[rank]; 12117699dbbSLois Curfman McInnes MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 12217699dbbSLois Curfman McInnes nmax = work[rank]; 12378b31e54SBarry Smith PETSCFREE(work); 1241eb62cbbSBarry Smith 1251eb62cbbSBarry Smith /* post receives: 1261eb62cbbSBarry Smith 1) each message will consist of ordered pairs 1271eb62cbbSBarry Smith (global index,value) we store the global index as a double 128d6dfbf8fSBarry Smith to simplify the message passing. 1291eb62cbbSBarry Smith 2) since we don't know how long each individual message is we 1301eb62cbbSBarry Smith allocate the largest needed buffer for each receive. Potentially 1311eb62cbbSBarry Smith this is a lot of wasted space. 1321eb62cbbSBarry Smith 1331eb62cbbSBarry Smith 1341eb62cbbSBarry Smith This could be done better. 1351eb62cbbSBarry Smith */ 13678b31e54SBarry Smith rvalues = (Scalar *) PETSCMALLOC(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 13778b31e54SBarry Smith CHKPTRQ(rvalues); 13878b31e54SBarry Smith recv_waits = (MPI_Request *) PETSCMALLOC((nreceives+1)*sizeof(MPI_Request)); 13978b31e54SBarry Smith CHKPTRQ(recv_waits); 1401eb62cbbSBarry Smith for ( i=0; i<nreceives; i++ ) { 141416022c9SBarry Smith MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 1421eb62cbbSBarry Smith comm,recv_waits+i); 1431eb62cbbSBarry Smith } 1441eb62cbbSBarry Smith 1451eb62cbbSBarry Smith /* do sends: 1461eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 1471eb62cbbSBarry Smith the ith processor 1481eb62cbbSBarry Smith */ 149416022c9SBarry Smith svalues = (Scalar *) PETSCMALLOC(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 15078b31e54SBarry Smith send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request)); 15178b31e54SBarry Smith CHKPTRQ(send_waits); 15217699dbbSLois Curfman McInnes starts = (int *) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(starts); 1531eb62cbbSBarry Smith starts[0] = 0; 15417699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1551eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1561eb62cbbSBarry Smith svalues[3*starts[owner[i]]] = (Scalar) aij->stash.idx[i]; 1571eb62cbbSBarry Smith svalues[3*starts[owner[i]]+1] = (Scalar) aij->stash.idy[i]; 1581eb62cbbSBarry Smith svalues[3*(starts[owner[i]]++)+2] = aij->stash.array[i]; 1591eb62cbbSBarry Smith } 16078b31e54SBarry Smith PETSCFREE(owner); 1611eb62cbbSBarry Smith starts[0] = 0; 16217699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1631eb62cbbSBarry Smith count = 0; 16417699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 1651eb62cbbSBarry Smith if (procs[i]) { 166416022c9SBarry Smith MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag, 1671eb62cbbSBarry Smith comm,send_waits+count++); 1681eb62cbbSBarry Smith } 1691eb62cbbSBarry Smith } 17078b31e54SBarry Smith PETSCFREE(starts); PETSCFREE(nprocs); 1711eb62cbbSBarry Smith 1721eb62cbbSBarry Smith /* Free cache space */ 17378b31e54SBarry Smith ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr); 1741eb62cbbSBarry Smith 1751eb62cbbSBarry Smith aij->svalues = svalues; aij->rvalues = rvalues; 1761eb62cbbSBarry Smith aij->nsends = nsends; aij->nrecvs = nreceives; 1771eb62cbbSBarry Smith aij->send_waits = send_waits; aij->recv_waits = recv_waits; 1781eb62cbbSBarry Smith aij->rmax = nmax; 1791eb62cbbSBarry Smith 1801eb62cbbSBarry Smith return 0; 1811eb62cbbSBarry Smith } 18244a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat); 1831eb62cbbSBarry Smith 184fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode) 1851eb62cbbSBarry Smith { 18644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 187dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ *) aij->A->data; 1881eb62cbbSBarry Smith MPI_Status *send_status,recv_status; 189416022c9SBarry Smith int imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr; 190416022c9SBarry Smith int row,col,other_disassembled,shift = C->indexshift; 1911eb62cbbSBarry Smith Scalar *values,val; 1921eb62cbbSBarry Smith InsertMode addv = aij->insertmode; 1931eb62cbbSBarry Smith 1941eb62cbbSBarry Smith /* wait on receives */ 1951eb62cbbSBarry Smith while (count) { 196d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status); 1971eb62cbbSBarry Smith /* unpack receives into our local space */ 198d6dfbf8fSBarry Smith values = aij->rvalues + 3*imdex*aij->rmax; 199c60448a5SBarry Smith MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 2001eb62cbbSBarry Smith n = n/3; 2011eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 2021eb62cbbSBarry Smith row = (int) PETSCREAL(values[3*i]) - aij->rstart; 2031eb62cbbSBarry Smith col = (int) PETSCREAL(values[3*i+1]); 2041eb62cbbSBarry Smith val = values[3*i+2]; 2051eb62cbbSBarry Smith if (col >= aij->cstart && col < aij->cend) { 2061eb62cbbSBarry Smith col -= aij->cstart; 2071eb62cbbSBarry Smith MatSetValues(aij->A,1,&row,1,&col,&val,addv); 2081eb62cbbSBarry Smith } 2091eb62cbbSBarry Smith else { 210d6dfbf8fSBarry Smith if (aij->assembled) { 211b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 212dbb450caSBarry Smith col = aij->colmap[col] + shift; 213ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 2142493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2152493cbb0SBarry Smith col = (int) PETSCREAL(values[3*i+1]); 216d6dfbf8fSBarry Smith } 2179e25ed09SBarry Smith } 2181eb62cbbSBarry Smith MatSetValues(aij->B,1,&row,1,&col,&val,addv); 2191eb62cbbSBarry Smith } 2201eb62cbbSBarry Smith } 2211eb62cbbSBarry Smith count--; 2221eb62cbbSBarry Smith } 22378b31e54SBarry Smith PETSCFREE(aij->recv_waits); PETSCFREE(aij->rvalues); 2241eb62cbbSBarry Smith 2251eb62cbbSBarry Smith /* wait on sends */ 2261eb62cbbSBarry Smith if (aij->nsends) { 22778b31e54SBarry Smith send_status = (MPI_Status *) PETSCMALLOC(aij->nsends*sizeof(MPI_Status)); 22878b31e54SBarry Smith CHKPTRQ(send_status); 2291eb62cbbSBarry Smith MPI_Waitall(aij->nsends,aij->send_waits,send_status); 23078b31e54SBarry Smith PETSCFREE(send_status); 2311eb62cbbSBarry Smith } 23278b31e54SBarry Smith PETSCFREE(aij->send_waits); PETSCFREE(aij->svalues); 2331eb62cbbSBarry Smith 23464119d58SLois Curfman McInnes aij->insertmode = NOT_SET_VALUES; 23578b31e54SBarry Smith ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr); 23678b31e54SBarry Smith ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr); 2371eb62cbbSBarry Smith 2382493cbb0SBarry Smith /* determine if any processor has disassembled, if so we must 2392493cbb0SBarry Smith also disassemble ourselfs, in order that we may reassemble. */ 240416022c9SBarry Smith MPI_Allreduce(&aij->assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm); 2412493cbb0SBarry Smith if (aij->assembled && !other_disassembled) { 2422493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2432493cbb0SBarry Smith } 2442493cbb0SBarry Smith 2455e42470aSBarry Smith if (!aij->assembled && mode == FINAL_ASSEMBLY) { 24678b31e54SBarry Smith ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr); 247d6dfbf8fSBarry Smith aij->assembled = 1; 2485e42470aSBarry Smith } 24978b31e54SBarry Smith ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr); 25078b31e54SBarry Smith ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr); 2515e42470aSBarry Smith 2528a729477SBarry Smith return 0; 2538a729477SBarry Smith } 2548a729477SBarry Smith 2552ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A) 2561eb62cbbSBarry Smith { 25744a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 258dbd7a890SLois Curfman McInnes int ierr; 25978b31e54SBarry Smith ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 26078b31e54SBarry Smith ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 2611eb62cbbSBarry Smith return 0; 2621eb62cbbSBarry Smith } 2631eb62cbbSBarry Smith 2641eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the 2651eb62cbbSBarry Smith matrix is square and the column and row owerships are identical. 2661eb62cbbSBarry Smith This is a BUG. The only way to fix it seems to be to access 2671eb62cbbSBarry Smith aij->A and aij->B directly and not through the MatZeroRows() 2681eb62cbbSBarry Smith routine. 2691eb62cbbSBarry Smith */ 27044a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag) 2711eb62cbbSBarry Smith { 27244a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 27317699dbbSLois Curfman McInnes int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 2746abc6512SBarry Smith int *procs,*nprocs,j,found,idx,nsends,*work; 27517699dbbSLois Curfman McInnes int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 2765392566eSBarry Smith int *rvalues,tag = A->tag,count,base,slen,n,*source; 277d6dfbf8fSBarry Smith int *lens,imdex,*lrows,*values; 278d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 2791eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 2801eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 2811eb62cbbSBarry Smith IS istmp; 2821eb62cbbSBarry Smith 28348d91487SBarry Smith if (!l->assembled) SETERRQ(1,"MatZeroRows_MPIAIJ:Must assemble matrix"); 28478b31e54SBarry Smith ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr); 28578b31e54SBarry Smith ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 2861eb62cbbSBarry Smith 2871eb62cbbSBarry Smith /* first count number of contributors to each processor */ 28817699dbbSLois Curfman McInnes nprocs = (int *) PETSCMALLOC( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 28917699dbbSLois Curfman McInnes PetscZero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 29078b31e54SBarry Smith owner = (int *) PETSCMALLOC((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 2911eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 2921eb62cbbSBarry Smith idx = rows[i]; 2931eb62cbbSBarry Smith found = 0; 29417699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 2951eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 2961eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 2971eb62cbbSBarry Smith } 2981eb62cbbSBarry Smith } 299bbb6d6a8SBarry Smith if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range"); 3001eb62cbbSBarry Smith } 30117699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 3021eb62cbbSBarry Smith 3031eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 30417699dbbSLois Curfman McInnes work = (int *) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(work); 30517699dbbSLois Curfman McInnes MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm); 30617699dbbSLois Curfman McInnes nrecvs = work[rank]; 30717699dbbSLois Curfman McInnes MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 30817699dbbSLois Curfman McInnes nmax = work[rank]; 30978b31e54SBarry Smith PETSCFREE(work); 3101eb62cbbSBarry Smith 3111eb62cbbSBarry Smith /* post receives: */ 31278b31e54SBarry Smith rvalues = (int *) PETSCMALLOC((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 31378b31e54SBarry Smith CHKPTRQ(rvalues); 31478b31e54SBarry Smith recv_waits = (MPI_Request *) PETSCMALLOC((nrecvs+1)*sizeof(MPI_Request)); 31578b31e54SBarry Smith CHKPTRQ(recv_waits); 3161eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 317416022c9SBarry Smith MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 3181eb62cbbSBarry Smith } 3191eb62cbbSBarry Smith 3201eb62cbbSBarry Smith /* do sends: 3211eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 3221eb62cbbSBarry Smith the ith processor 3231eb62cbbSBarry Smith */ 32478b31e54SBarry Smith svalues = (int *) PETSCMALLOC( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 32578b31e54SBarry Smith send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request)); 32678b31e54SBarry Smith CHKPTRQ(send_waits); 32717699dbbSLois Curfman McInnes starts = (int *) PETSCMALLOC( (size+1)*sizeof(int) ); CHKPTRQ(starts); 3281eb62cbbSBarry Smith starts[0] = 0; 32917699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3301eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3311eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 3321eb62cbbSBarry Smith } 3331eb62cbbSBarry Smith ISRestoreIndices(is,&rows); 3341eb62cbbSBarry Smith 3351eb62cbbSBarry Smith starts[0] = 0; 33617699dbbSLois Curfman McInnes for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3371eb62cbbSBarry Smith count = 0; 33817699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 3391eb62cbbSBarry Smith if (procs[i]) { 340416022c9SBarry Smith MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++); 3411eb62cbbSBarry Smith } 3421eb62cbbSBarry Smith } 34378b31e54SBarry Smith PETSCFREE(starts); 3441eb62cbbSBarry Smith 34517699dbbSLois Curfman McInnes base = owners[rank]; 3461eb62cbbSBarry Smith 3471eb62cbbSBarry Smith /* wait on receives */ 34878b31e54SBarry Smith lens = (int *) PETSCMALLOC( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 3491eb62cbbSBarry Smith source = lens + nrecvs; 3501eb62cbbSBarry Smith count = nrecvs; slen = 0; 3511eb62cbbSBarry Smith while (count) { 352d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 3531eb62cbbSBarry Smith /* unpack receives into our local space */ 3541eb62cbbSBarry Smith MPI_Get_count(&recv_status,MPI_INT,&n); 355d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 356d6dfbf8fSBarry Smith lens[imdex] = n; 3571eb62cbbSBarry Smith slen += n; 3581eb62cbbSBarry Smith count--; 3591eb62cbbSBarry Smith } 36078b31e54SBarry Smith PETSCFREE(recv_waits); 3611eb62cbbSBarry Smith 3621eb62cbbSBarry Smith /* move the data into the send scatter */ 36378b31e54SBarry Smith lrows = (int *) PETSCMALLOC( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 3641eb62cbbSBarry Smith count = 0; 3651eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 3661eb62cbbSBarry Smith values = rvalues + i*nmax; 3671eb62cbbSBarry Smith for ( j=0; j<lens[i]; j++ ) { 3681eb62cbbSBarry Smith lrows[count++] = values[j] - base; 3691eb62cbbSBarry Smith } 3701eb62cbbSBarry Smith } 37178b31e54SBarry Smith PETSCFREE(rvalues); PETSCFREE(lens); 37278b31e54SBarry Smith PETSCFREE(owner); PETSCFREE(nprocs); 3731eb62cbbSBarry Smith 3741eb62cbbSBarry Smith /* actually zap the local rows */ 375416022c9SBarry Smith ierr = ISCreateSeq(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 376464493b3SBarry Smith PLogObjectParent(A,istmp); 377416022c9SBarry Smith PETSCFREE(lrows); 37878b31e54SBarry Smith ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 37978b31e54SBarry Smith ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 38078b31e54SBarry Smith ierr = ISDestroy(istmp); CHKERRQ(ierr); 3811eb62cbbSBarry Smith 3821eb62cbbSBarry Smith /* wait on sends */ 3831eb62cbbSBarry Smith if (nsends) { 38478b31e54SBarry Smith send_status = (MPI_Status *) PETSCMALLOC(nsends*sizeof(MPI_Status)); 38578b31e54SBarry Smith CHKPTRQ(send_status); 3861eb62cbbSBarry Smith MPI_Waitall(nsends,send_waits,send_status); 38778b31e54SBarry Smith PETSCFREE(send_status); 3881eb62cbbSBarry Smith } 38978b31e54SBarry Smith PETSCFREE(send_waits); PETSCFREE(svalues); 3901eb62cbbSBarry Smith 3911eb62cbbSBarry Smith return 0; 3921eb62cbbSBarry Smith } 3931eb62cbbSBarry Smith 394416022c9SBarry Smith static int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy) 3951eb62cbbSBarry Smith { 396416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 3971eb62cbbSBarry Smith int ierr; 398416022c9SBarry Smith 39948d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix"); 40064119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 401416022c9SBarry Smith ierr = MatMult(a->A,xx,yy); CHKERRQ(ierr); 40264119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 403416022c9SBarry Smith ierr = MatMultAdd(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 4041eb62cbbSBarry Smith return 0; 4051eb62cbbSBarry Smith } 4061eb62cbbSBarry Smith 407416022c9SBarry Smith static int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 408da3a660dSBarry Smith { 409416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 410da3a660dSBarry Smith int ierr; 41148d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix"); 41264119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 413416022c9SBarry Smith ierr = MatMultAdd(a->A,xx,yy,zz); CHKERRQ(ierr); 41464119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 415416022c9SBarry Smith ierr = MatMultAdd(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 416da3a660dSBarry Smith return 0; 417da3a660dSBarry Smith } 418da3a660dSBarry Smith 419416022c9SBarry Smith static int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy) 420da3a660dSBarry Smith { 421416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 422da3a660dSBarry Smith int ierr; 423da3a660dSBarry Smith 42448d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMulTrans_MPIAIJ:must assemble matrix"); 425da3a660dSBarry Smith /* do nondiagonal part */ 426416022c9SBarry Smith ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr); 427da3a660dSBarry Smith /* send it on its way */ 428416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES, 42964119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 430da3a660dSBarry Smith /* do local part */ 431416022c9SBarry Smith ierr = MatMultTrans(a->A,xx,yy); CHKERRQ(ierr); 432da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 433da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 434da3a660dSBarry Smith /* but is not perhaps always true. */ 435416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES, 43664119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 437da3a660dSBarry Smith return 0; 438da3a660dSBarry Smith } 439da3a660dSBarry Smith 440416022c9SBarry Smith static int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 441da3a660dSBarry Smith { 442416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 443da3a660dSBarry Smith int ierr; 444da3a660dSBarry Smith 44548d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMulTransAdd_MPIAIJ:must assemble matrix"); 446da3a660dSBarry Smith /* do nondiagonal part */ 447416022c9SBarry Smith ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr); 448da3a660dSBarry Smith /* send it on its way */ 449416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES, 45064119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 451da3a660dSBarry Smith /* do local part */ 452416022c9SBarry Smith ierr = MatMultTransAdd(a->A,xx,yy,zz); CHKERRQ(ierr); 453da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 454da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 455da3a660dSBarry Smith /* but is not perhaps always true. */ 456416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES, 45764119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 458da3a660dSBarry Smith return 0; 459da3a660dSBarry Smith } 460da3a660dSBarry Smith 4611eb62cbbSBarry Smith /* 4621eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 4631eb62cbbSBarry Smith diagonal block 4641eb62cbbSBarry Smith */ 465416022c9SBarry Smith static int MatGetDiagonal_MPIAIJ(Mat A,Vec v) 4661eb62cbbSBarry Smith { 467416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 46848d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatGetDiag_MPIAIJ:must assemble matrix"); 469416022c9SBarry Smith return MatGetDiagonal(a->A,v); 4701eb62cbbSBarry Smith } 4711eb62cbbSBarry Smith 47244a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj) 4731eb62cbbSBarry Smith { 4741eb62cbbSBarry Smith Mat mat = (Mat) obj; 47544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 4761eb62cbbSBarry Smith int ierr; 477a5a9c739SBarry Smith #if defined(PETSC_LOG) 4786e35fa57SLois Curfman McInnes PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N); 479a5a9c739SBarry Smith #endif 48078b31e54SBarry Smith PETSCFREE(aij->rowners); 48178b31e54SBarry Smith ierr = MatDestroy(aij->A); CHKERRQ(ierr); 48278b31e54SBarry Smith ierr = MatDestroy(aij->B); CHKERRQ(ierr); 48378b31e54SBarry Smith if (aij->colmap) PETSCFREE(aij->colmap); 48478b31e54SBarry Smith if (aij->garray) PETSCFREE(aij->garray); 4851eb62cbbSBarry Smith if (aij->lvec) VecDestroy(aij->lvec); 4861eb62cbbSBarry Smith if (aij->Mvctx) VecScatterCtxDestroy(aij->Mvctx); 48778b31e54SBarry Smith PETSCFREE(aij); 488a5a9c739SBarry Smith PLogObjectDestroy(mat); 489a5a9c739SBarry Smith PETSCHEADERDESTROY(mat); 4901eb62cbbSBarry Smith return 0; 4911eb62cbbSBarry Smith } 4927857610eSBarry Smith #include "draw.h" 493b16a3bb1SBarry Smith #include "pinclude/pviewer.h" 494ee50ffe9SBarry Smith 495416022c9SBarry Smith static int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer) 4961eb62cbbSBarry Smith { 497416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 498416022c9SBarry Smith int ierr; 499416022c9SBarry Smith 50017699dbbSLois Curfman McInnes if (aij->size == 1) { 501416022c9SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 502416022c9SBarry Smith } 503a523beb4SLois Curfman McInnes else SETERRQ(1,"MatView_MPIAIJ_Binary:Only uniprocessor output supported"); 504416022c9SBarry Smith return 0; 505416022c9SBarry Smith } 506416022c9SBarry Smith 507416022c9SBarry Smith static int MatView_MPIAIJ_ASCIIorDraw(Mat mat,Viewer viewer) 508416022c9SBarry Smith { 50944a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 510dbb450caSBarry Smith Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data; 511416022c9SBarry Smith int ierr, format,shift = C->indexshift; 512d13ab20cSBarry Smith PetscObject vobj = (PetscObject) viewer; 513d636dbe3SBarry Smith FILE *fd; 514416022c9SBarry Smith 515416022c9SBarry Smith if (vobj->type == ASCII_FILE_VIEWER || vobj->type == ASCII_FILES_VIEWER) { 516416022c9SBarry Smith ierr = ViewerFileGetFormat_Private(viewer,&format); 517416022c9SBarry Smith if (format == FILE_FORMAT_INFO) { 518416022c9SBarry Smith return 0; 519416022c9SBarry Smith } 520416022c9SBarry Smith } 521416022c9SBarry Smith 522416022c9SBarry Smith if (vobj->type == ASCII_FILE_VIEWER) { 523d636dbe3SBarry Smith ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr); 5247f813858SBarry Smith MPIU_Seq_begin(mat->comm,1); 525d13ab20cSBarry Smith fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 52617699dbbSLois Curfman McInnes aij->rank,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart, 5271eb62cbbSBarry Smith aij->cend); 52878b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 52978b31e54SBarry Smith ierr = MatView(aij->B,viewer); CHKERRQ(ierr); 530d13ab20cSBarry Smith fflush(fd); 5317f813858SBarry Smith MPIU_Seq_end(mat->comm,1); 532d13ab20cSBarry Smith } 533416022c9SBarry Smith else { 53417699dbbSLois Curfman McInnes int size = aij->size, rank = aij->rank; 53517699dbbSLois Curfman McInnes if (size == 1) { 53678b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 53795373324SBarry Smith } 53895373324SBarry Smith else { 53995373324SBarry Smith /* assemble the entire matrix onto first processor. */ 54095373324SBarry Smith Mat A; 541ec8511deSBarry Smith Mat_SeqAIJ *Aloc; 5422eb8c8abSBarry Smith int M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct; 54395373324SBarry Smith Scalar *a; 5442ee70a88SLois Curfman McInnes 54517699dbbSLois Curfman McInnes if (!rank) { 546416022c9SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,0,0,0,&A);CHKERRQ(ierr); 54795373324SBarry Smith } 54895373324SBarry Smith else { 549416022c9SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,0,0,0,&A);CHKERRQ(ierr); 55095373324SBarry Smith } 551464493b3SBarry Smith PLogObjectParent(mat,A); 552416022c9SBarry Smith 55395373324SBarry Smith 55495373324SBarry Smith /* copy over the A part */ 555ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->A->data; 5562ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 55795373324SBarry Smith row = aij->rstart; 558dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;} 55995373324SBarry Smith for ( i=0; i<m; i++ ) { 560416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr); 56195373324SBarry Smith row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 56295373324SBarry Smith } 5632ee70a88SLois Curfman McInnes aj = Aloc->j; 564dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;} 56595373324SBarry Smith 56695373324SBarry Smith /* copy over the B part */ 567ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->B->data; 5682ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 56995373324SBarry Smith row = aij->rstart; 57078b31e54SBarry Smith ct = cols = (int *) PETSCMALLOC( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols); 571dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];} 57295373324SBarry Smith for ( i=0; i<m; i++ ) { 573416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr); 57495373324SBarry Smith row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 57595373324SBarry Smith } 57678b31e54SBarry Smith PETSCFREE(ct); 57778b31e54SBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 57878b31e54SBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 57917699dbbSLois Curfman McInnes if (!rank) { 58078b31e54SBarry Smith ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 58195373324SBarry Smith } 58278b31e54SBarry Smith ierr = MatDestroy(A); CHKERRQ(ierr); 58395373324SBarry Smith } 58495373324SBarry Smith } 5851eb62cbbSBarry Smith return 0; 5861eb62cbbSBarry Smith } 5871eb62cbbSBarry Smith 588416022c9SBarry Smith static int MatView_MPIAIJ(PetscObject obj,Viewer viewer) 589416022c9SBarry Smith { 590416022c9SBarry Smith Mat mat = (Mat) obj; 591416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 592416022c9SBarry Smith int ierr; 593416022c9SBarry Smith PetscObject vobj = (PetscObject) viewer; 594416022c9SBarry Smith 59548d91487SBarry Smith if (!aij->assembled) SETERRQ(1,"MatView_MPIAIJ:must assemble matrix"); 596416022c9SBarry Smith if (!viewer) { 597416022c9SBarry Smith viewer = STDOUT_VIEWER_SELF; vobj = (PetscObject) viewer; 598416022c9SBarry Smith } 599416022c9SBarry Smith if (vobj->cookie == DRAW_COOKIE && vobj->type == NULLWINDOW) return 0; 600416022c9SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILE_VIEWER) { 601416022c9SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr); 602416022c9SBarry Smith } 603416022c9SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILES_VIEWER) { 604416022c9SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr); 605416022c9SBarry Smith } 606416022c9SBarry Smith else if (vobj->cookie == DRAW_COOKIE) { 607416022c9SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr); 608416022c9SBarry Smith } 609416022c9SBarry Smith else if (vobj->type == BINARY_FILE_VIEWER) { 610416022c9SBarry Smith return MatView_MPIAIJ_Binary(mat,viewer); 611416022c9SBarry Smith } 612416022c9SBarry Smith return 0; 613416022c9SBarry Smith } 614416022c9SBarry Smith 615ec8511deSBarry Smith extern int MatMarkDiag_SeqAIJ(Mat); 6161eb62cbbSBarry Smith /* 6171eb62cbbSBarry Smith This has to provide several versions. 6181eb62cbbSBarry Smith 6191eb62cbbSBarry Smith 1) per sequential 6201eb62cbbSBarry Smith 2) a) use only local smoothing updating outer values only once. 6211eb62cbbSBarry Smith b) local smoothing updating outer values each inner iteration 622d6dfbf8fSBarry Smith 3) color updating out values betwen colors. 6231eb62cbbSBarry Smith */ 624fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag, 625dbb450caSBarry Smith double fshift,int its,Vec xx) 6268a729477SBarry Smith { 62744a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 628d6dfbf8fSBarry Smith Mat AA = mat->A, BB = mat->B; 629ec8511deSBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data; 6306abc6512SBarry Smith Scalar zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts; 6316abc6512SBarry Smith int ierr,*idx, *diag; 632416022c9SBarry Smith int n = mat->n, m = mat->m, i,shift = A->indexshift; 633da3a660dSBarry Smith Vec tt; 6348a729477SBarry Smith 63548d91487SBarry Smith if (!mat->assembled) SETERRQ(1,"MatRelax_MPIAIJ:must assemble matrix"); 6361eb62cbbSBarry Smith 637d6dfbf8fSBarry Smith VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls); 638dbb450caSBarry Smith xs = x + shift; /* shift by one for index start of 1 */ 639dbb450caSBarry Smith ls = ls + shift; 640ec8511deSBarry Smith if (!A->diag) {if ((ierr = MatMarkDiag_SeqAIJ(AA))) return ierr;} 641d6dfbf8fSBarry Smith diag = A->diag; 642acb40c82SBarry Smith if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) { 64348d91487SBarry Smith SETERRQ(1,"MatRelax_MPIAIJ:Option not supported"); 644acb40c82SBarry Smith } 645da3a660dSBarry Smith if (flag & SOR_EISENSTAT) { 646da3a660dSBarry Smith /* Let A = L + U + D; where L is lower trianglar, 647da3a660dSBarry Smith U is upper triangular, E is diagonal; This routine applies 648da3a660dSBarry Smith 649da3a660dSBarry Smith (L + E)^{-1} A (U + E)^{-1} 650da3a660dSBarry Smith 651da3a660dSBarry Smith to a vector efficiently using Eisenstat's trick. This is for 652da3a660dSBarry Smith the case of SSOR preconditioner, so E is D/omega where omega 653da3a660dSBarry Smith is the relaxation factor. 654da3a660dSBarry Smith */ 65578b31e54SBarry Smith ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr); 656464493b3SBarry Smith PLogObjectParent(matin,tt); 657da3a660dSBarry Smith VecGetArray(tt,&t); 658da3a660dSBarry Smith scale = (2.0/omega) - 1.0; 659da3a660dSBarry Smith /* x = (E + U)^{-1} b */ 660da3a660dSBarry Smith VecSet(&zero,mat->lvec); 66164119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 66278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 663da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 664da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 665dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 666dbb450caSBarry Smith v = A->a + diag[i] + !shift; 667da3a660dSBarry Smith sum = b[i]; 668da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 669dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 670da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 671dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 672dbb450caSBarry Smith v = B->a + B->i[i] + shift; 673da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 674da3a660dSBarry Smith x[i] = omega*(sum/d); 675da3a660dSBarry Smith } 67664119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 67778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 678da3a660dSBarry Smith 679da3a660dSBarry Smith /* t = b - (2*E - D)x */ 680da3a660dSBarry Smith v = A->a; 681dbb450caSBarry Smith for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ + shift])*x[i]; } 682da3a660dSBarry Smith 683da3a660dSBarry Smith /* t = (E + L)^{-1}t */ 684dbb450caSBarry Smith ts = t + shift; /* shifted by one for index start of a or mat->j*/ 685da3a660dSBarry Smith diag = A->diag; 686da3a660dSBarry Smith VecSet(&zero,mat->lvec); 68764119d58SLois Curfman McInnes ierr = VecPipelineBegin(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 68878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 689da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 690da3a660dSBarry Smith n = diag[i] - A->i[i]; 691dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 692dbb450caSBarry Smith v = A->a + A->i[i] + shift; 693da3a660dSBarry Smith sum = t[i]; 694da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ts,v,idx,n); 695dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 696da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 697dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 698dbb450caSBarry Smith v = B->a + B->i[i] + shift; 699da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 700da3a660dSBarry Smith t[i] = omega*(sum/d); 701da3a660dSBarry Smith } 70264119d58SLois Curfman McInnes ierr = VecPipelineEnd(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 70378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 704da3a660dSBarry Smith /* x = x + t */ 705da3a660dSBarry Smith for ( i=0; i<m; i++ ) { x[i] += t[i]; } 706da3a660dSBarry Smith VecDestroy(tt); 707da3a660dSBarry Smith return 0; 708da3a660dSBarry Smith } 709da3a660dSBarry Smith 7101eb62cbbSBarry Smith 711d6dfbf8fSBarry Smith if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){ 712da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 713da3a660dSBarry Smith VecSet(&zero,mat->lvec); VecSet(&zero,xx); 714da3a660dSBarry Smith } 715da3a660dSBarry Smith else { 71664119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 71778b31e54SBarry Smith CHKERRQ(ierr); 71864119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 71978b31e54SBarry Smith CHKERRQ(ierr); 720da3a660dSBarry Smith } 721d6dfbf8fSBarry Smith while (its--) { 722d6dfbf8fSBarry Smith /* go down through the rows */ 72364119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 72478b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 725d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 726d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 727dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 728dbb450caSBarry Smith v = A->a + A->i[i] + shift; 729d6dfbf8fSBarry Smith sum = b[i]; 730d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 731dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 732d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 733dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 734dbb450caSBarry Smith v = B->a + B->i[i] + shift; 735d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 736d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 737d6dfbf8fSBarry Smith } 73864119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 73978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 740d6dfbf8fSBarry Smith /* come up through the rows */ 74164119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 74278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 743d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 744d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 745dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 746dbb450caSBarry Smith v = A->a + A->i[i] + shift; 747d6dfbf8fSBarry Smith sum = b[i]; 748d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 749dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 750d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 751dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 752dbb450caSBarry Smith v = B->a + B->i[i] + shift; 753d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 754d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 755d6dfbf8fSBarry Smith } 75664119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 75778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 758d6dfbf8fSBarry Smith } 759d6dfbf8fSBarry Smith } 760d6dfbf8fSBarry Smith else if (flag & SOR_FORWARD_SWEEP){ 761da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 762da3a660dSBarry Smith VecSet(&zero,mat->lvec); 76364119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 76478b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 765da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 766da3a660dSBarry Smith n = diag[i] - A->i[i]; 767dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 768dbb450caSBarry Smith v = A->a + A->i[i] + shift; 769da3a660dSBarry Smith sum = b[i]; 770da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 771dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 772da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 773dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 774dbb450caSBarry Smith v = B->a + B->i[i] + shift; 775da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 776da3a660dSBarry Smith x[i] = omega*(sum/d); 777da3a660dSBarry Smith } 77864119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 77978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 780da3a660dSBarry Smith its--; 781da3a660dSBarry Smith } 782d6dfbf8fSBarry Smith while (its--) { 78364119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 78478b31e54SBarry Smith CHKERRQ(ierr); 78564119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 78678b31e54SBarry Smith CHKERRQ(ierr); 78764119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 78878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 789d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 790d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 791dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 792dbb450caSBarry Smith v = A->a + A->i[i] + shift; 793d6dfbf8fSBarry Smith sum = b[i]; 794d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 795dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 796d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 797dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 798dbb450caSBarry Smith v = B->a + B->i[i] + shift; 799d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 800d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 801d6dfbf8fSBarry Smith } 80264119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 80378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 804d6dfbf8fSBarry Smith } 805d6dfbf8fSBarry Smith } 806d6dfbf8fSBarry Smith else if (flag & SOR_BACKWARD_SWEEP){ 807da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 808da3a660dSBarry Smith VecSet(&zero,mat->lvec); 80964119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 81078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 811da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 812da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 813dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 814dbb450caSBarry Smith v = A->a + diag[i] + !shift; 815da3a660dSBarry Smith sum = b[i]; 816da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 817dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 818da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 819dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 820dbb450caSBarry Smith v = B->a + B->i[i] + shift; 821da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 822da3a660dSBarry Smith x[i] = omega*(sum/d); 823da3a660dSBarry Smith } 82464119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 82578b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 826da3a660dSBarry Smith its--; 827da3a660dSBarry Smith } 828d6dfbf8fSBarry Smith while (its--) { 82964119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN, 83078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 83164119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN, 83278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 83364119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 83478b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 835d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 836d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 837dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 838dbb450caSBarry Smith v = A->a + A->i[i] + shift; 839d6dfbf8fSBarry Smith sum = b[i]; 840d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 841dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 842d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 843dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 844dbb450caSBarry Smith v = B->a + B->i[i] + shift; 845d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 846d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 847d6dfbf8fSBarry Smith } 84864119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 84978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 850d6dfbf8fSBarry Smith } 851d6dfbf8fSBarry Smith } 852d6dfbf8fSBarry Smith else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 853da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 854dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 855da3a660dSBarry Smith } 85664119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 85778b31e54SBarry Smith CHKERRQ(ierr); 85864119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 85978b31e54SBarry Smith CHKERRQ(ierr); 860d6dfbf8fSBarry Smith while (its--) { 861d6dfbf8fSBarry Smith /* go down through the rows */ 862d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 863d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 864dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 865dbb450caSBarry Smith v = A->a + A->i[i] + shift; 866d6dfbf8fSBarry Smith sum = b[i]; 867d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 868dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 869d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 870dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 871dbb450caSBarry Smith v = B->a + B->i[i] + shift; 872d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 873d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 874d6dfbf8fSBarry Smith } 875d6dfbf8fSBarry Smith /* come up through the rows */ 876d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 877d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 878dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 879dbb450caSBarry Smith v = A->a + A->i[i] + shift; 880d6dfbf8fSBarry Smith sum = b[i]; 881d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 882dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 883d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 884dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 885dbb450caSBarry Smith v = B->a + B->i[i] + shift; 886d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 887d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 888d6dfbf8fSBarry Smith } 889d6dfbf8fSBarry Smith } 890d6dfbf8fSBarry Smith } 891d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 892da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 893dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 894da3a660dSBarry Smith } 89564119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 89678b31e54SBarry Smith CHKERRQ(ierr); 89764119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 89878b31e54SBarry Smith CHKERRQ(ierr); 899d6dfbf8fSBarry Smith while (its--) { 900d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 901d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 902dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 903dbb450caSBarry Smith v = A->a + A->i[i] + shift; 904d6dfbf8fSBarry Smith sum = b[i]; 905d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 906dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 907d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 908dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 909dbb450caSBarry Smith v = B->a + B->i[i] + shift; 910d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 911d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 912d6dfbf8fSBarry Smith } 913d6dfbf8fSBarry Smith } 914d6dfbf8fSBarry Smith } 915d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 916da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 917dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 918da3a660dSBarry Smith } 91964119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL, 92078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 92164119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL, 92278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 923d6dfbf8fSBarry Smith while (its--) { 924d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 925d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 926dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 927dbb450caSBarry Smith v = A->a + A->i[i] + shift; 928d6dfbf8fSBarry Smith sum = b[i]; 929d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 930dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 931d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 932dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 933dbb450caSBarry Smith v = B->a + B->i[i] + shift; 934d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 935d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 936d6dfbf8fSBarry Smith } 937d6dfbf8fSBarry Smith } 938d6dfbf8fSBarry Smith } 9398a729477SBarry Smith return 0; 9408a729477SBarry Smith } 941a66be287SLois Curfman McInnes 942fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz, 943fc76ce87SLois Curfman McInnes int *nzalloc,int *mem) 944a66be287SLois Curfman McInnes { 945a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 946a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 947a66be287SLois Curfman McInnes int ierr, isend[3], irecv[3], nzA, nzallocA, memA; 948a66be287SLois Curfman McInnes 94978b31e54SBarry Smith ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr); 95078b31e54SBarry Smith ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr); 951a66be287SLois Curfman McInnes isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA; 952a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 953a66be287SLois Curfman McInnes *nz = isend[0]; *nzalloc = isend[1]; *mem = isend[2]; 954a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 955d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_MAX,matin->comm); 956a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 957a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 958d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_SUM,matin->comm); 959a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 960a66be287SLois Curfman McInnes } 961a66be287SLois Curfman McInnes return 0; 962a66be287SLois Curfman McInnes } 963a66be287SLois Curfman McInnes 964299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*); 965299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*); 966299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double); 967299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *); 968299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec); 969299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec); 970299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec); 971299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec); 972299609e3SLois Curfman McInnes 973416022c9SBarry Smith static int MatSetOption_MPIAIJ(Mat A,MatOption op) 974c74985f6SBarry Smith { 975c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 976c74985f6SBarry Smith 977c0bbcb79SLois Curfman McInnes if (op == NO_NEW_NONZERO_LOCATIONS || 978c0bbcb79SLois Curfman McInnes op == YES_NEW_NONZERO_LOCATIONS || 979c0bbcb79SLois Curfman McInnes op == COLUMNS_SORTED || 980c0bbcb79SLois Curfman McInnes op == ROW_ORIENTED) { 981c0bbcb79SLois Curfman McInnes MatSetOption(a->A,op); 982c0bbcb79SLois Curfman McInnes MatSetOption(a->B,op); 983c74985f6SBarry Smith } 984c0bbcb79SLois Curfman McInnes else if (op == ROWS_SORTED || 985c0bbcb79SLois Curfman McInnes op == SYMMETRIC_MATRIX || 986c0bbcb79SLois Curfman McInnes op == STRUCTURALLY_SYMMETRIC_MATRIX || 987c0bbcb79SLois Curfman McInnes op == YES_NEW_DIAGONALS) 988c0bbcb79SLois Curfman McInnes PLogInfo((PetscObject)A,"Info:MatSetOption_MPIAIJ:Option ignored\n"); 989bbb6d6a8SBarry Smith else if (op == COLUMN_ORIENTED) 9904d39ef84SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:COLUMN_ORIENTED");} 991c0bbcb79SLois Curfman McInnes else if (op == NO_NEW_DIAGONALS) 9924d39ef84SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:NO_NEW_DIAGONALS");} 993c0bbcb79SLois Curfman McInnes else 9944d39ef84SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:unknown option");} 995c74985f6SBarry Smith return 0; 996c74985f6SBarry Smith } 997c74985f6SBarry Smith 998d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n) 999c74985f6SBarry Smith { 100044a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1001c74985f6SBarry Smith *m = mat->M; *n = mat->N; 1002c74985f6SBarry Smith return 0; 1003c74985f6SBarry Smith } 1004c74985f6SBarry Smith 1005d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n) 1006c74985f6SBarry Smith { 100744a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1008b7c46309SBarry Smith *m = mat->m; *n = mat->N; 1009c74985f6SBarry Smith return 0; 1010c74985f6SBarry Smith } 1011c74985f6SBarry Smith 1012d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n) 1013c74985f6SBarry Smith { 101444a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1015c74985f6SBarry Smith *m = mat->rstart; *n = mat->rend; 1016c74985f6SBarry Smith return 0; 1017c74985f6SBarry Smith } 1018c74985f6SBarry Smith 101939e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 102039e00950SLois Curfman McInnes { 1021154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1022154123eaSLois Curfman McInnes Scalar *vworkA, *vworkB, **pvA, **pvB; 1023154123eaSLois Curfman McInnes int i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart; 1024154123eaSLois Curfman McInnes int nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend; 102539e00950SLois Curfman McInnes 1026416022c9SBarry Smith if (row < rstart || row >= rend) SETERRQ(1,"MatGetRow_MPIAIJ:only local rows") 1027abc0e9e4SLois Curfman McInnes lrow = row - rstart; 102839e00950SLois Curfman McInnes 1029154123eaSLois Curfman McInnes pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1030154123eaSLois Curfman McInnes if (!v) {pvA = 0; pvB = 0;} 1031154123eaSLois Curfman McInnes if (!idx) {pcA = 0; if (!v) pcB = 0;} 103278b31e54SBarry Smith ierr = MatGetRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 103378b31e54SBarry Smith ierr = MatGetRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1034154123eaSLois Curfman McInnes nztot = nzA + nzB; 1035154123eaSLois Curfman McInnes 1036154123eaSLois Curfman McInnes if (v || idx) { 1037154123eaSLois Curfman McInnes if (nztot) { 1038154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1039299609e3SLois Curfman McInnes int imark; 104048b35521SBarry Smith if (mat->assembled) { 1041154123eaSLois Curfman McInnes for (i=0; i<nzB; i++) cworkB[i] = mat->garray[cworkB[i]]; 104248b35521SBarry Smith } 1043154123eaSLois Curfman McInnes if (v) { 104478b31e54SBarry Smith *v = (Scalar *) PETSCMALLOC( (nztot)*sizeof(Scalar) ); CHKPTRQ(*v); 104539e00950SLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1046154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*v)[i] = vworkB[i]; 1047154123eaSLois Curfman McInnes else break; 1048154123eaSLois Curfman McInnes } 1049154123eaSLois Curfman McInnes imark = i; 1050154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*v)[imark+i] = vworkA[i]; 1051299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*v)[nzA+i] = vworkB[i]; 1052154123eaSLois Curfman McInnes } 1053154123eaSLois Curfman McInnes if (idx) { 105478b31e54SBarry Smith *idx = (int *) PETSCMALLOC( (nztot)*sizeof(int) ); CHKPTRQ(*idx); 1055154123eaSLois Curfman McInnes for (i=0; i<nzA; i++) cworkA[i] += cstart; 1056154123eaSLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1057154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*idx)[i] = cworkB[i]; 1058154123eaSLois Curfman McInnes else break; 1059154123eaSLois Curfman McInnes } 1060154123eaSLois Curfman McInnes imark = i; 1061154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*idx)[imark+i] = cworkA[i]; 1062299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*idx)[nzA+i] = cworkB[i]; 106339e00950SLois Curfman McInnes } 106439e00950SLois Curfman McInnes } 106539e00950SLois Curfman McInnes else {*idx = 0; *v=0;} 1066154123eaSLois Curfman McInnes } 106739e00950SLois Curfman McInnes *nz = nztot; 106878b31e54SBarry Smith ierr = MatRestoreRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 106978b31e54SBarry Smith ierr = MatRestoreRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 107039e00950SLois Curfman McInnes return 0; 107139e00950SLois Curfman McInnes } 107239e00950SLois Curfman McInnes 107339e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 107439e00950SLois Curfman McInnes { 107578b31e54SBarry Smith if (idx) PETSCFREE(*idx); 107678b31e54SBarry Smith if (v) PETSCFREE(*v); 107739e00950SLois Curfman McInnes return 0; 107839e00950SLois Curfman McInnes } 107939e00950SLois Curfman McInnes 1080855ac2c5SLois Curfman McInnes static int MatNorm_MPIAIJ(Mat mat,MatNormType type,double *norm) 1081855ac2c5SLois Curfman McInnes { 1082855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1083ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data; 1084416022c9SBarry Smith int ierr, i, j, cstart = aij->cstart,shift = amat->indexshift; 1085416022c9SBarry Smith double sum = 0.0; 108604ca555eSLois Curfman McInnes Scalar *v; 108704ca555eSLois Curfman McInnes 1088416022c9SBarry Smith if (!aij->assembled) SETERRQ(1,"MatNorm_MPIAIJ:Must assemble matrix"); 108917699dbbSLois Curfman McInnes if (aij->size == 1) { 109014183eadSLois Curfman McInnes ierr = MatNorm(aij->A,type,norm); CHKERRQ(ierr); 109137fa93a5SLois Curfman McInnes } else { 109204ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 109304ca555eSLois Curfman McInnes v = amat->a; 109404ca555eSLois Curfman McInnes for (i=0; i<amat->nz; i++ ) { 109504ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 109604ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 109704ca555eSLois Curfman McInnes #else 109804ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 109904ca555eSLois Curfman McInnes #endif 110004ca555eSLois Curfman McInnes } 110104ca555eSLois Curfman McInnes v = bmat->a; 110204ca555eSLois Curfman McInnes for (i=0; i<bmat->nz; i++ ) { 110304ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 110404ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 110504ca555eSLois Curfman McInnes #else 110604ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 110704ca555eSLois Curfman McInnes #endif 110804ca555eSLois Curfman McInnes } 110904ca555eSLois Curfman McInnes MPI_Allreduce((void*)&sum,(void*)norm,1,MPI_DOUBLE,MPI_SUM,mat->comm); 111004ca555eSLois Curfman McInnes *norm = sqrt(*norm); 111104ca555eSLois Curfman McInnes } 111204ca555eSLois Curfman McInnes else if (type == NORM_1) { /* max column norm */ 111304ca555eSLois Curfman McInnes double *tmp, *tmp2; 111404ca555eSLois Curfman McInnes int *jj, *garray = aij->garray; 111504ca555eSLois Curfman McInnes tmp = (double *) PETSCMALLOC( aij->N*sizeof(double) ); CHKPTRQ(tmp); 111604ca555eSLois Curfman McInnes tmp2 = (double *) PETSCMALLOC( aij->N*sizeof(double) ); CHKPTRQ(tmp2); 1117416022c9SBarry Smith PetscZero(tmp,aij->N*sizeof(double)); 111804ca555eSLois Curfman McInnes *norm = 0.0; 111904ca555eSLois Curfman McInnes v = amat->a; jj = amat->j; 112004ca555eSLois Curfman McInnes for ( j=0; j<amat->nz; j++ ) { 112104ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 1122dbb450caSBarry Smith tmp[cstart + *jj++ + shift] += abs(*v++); 112304ca555eSLois Curfman McInnes #else 1124dbb450caSBarry Smith tmp[cstart + *jj++ + shift] += fabs(*v++); 112504ca555eSLois Curfman McInnes #endif 112604ca555eSLois Curfman McInnes } 112704ca555eSLois Curfman McInnes v = bmat->a; jj = bmat->j; 112804ca555eSLois Curfman McInnes for ( j=0; j<bmat->nz; j++ ) { 112904ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 1130dbb450caSBarry Smith tmp[garray[*jj++ + shift]] += abs(*v++); 113104ca555eSLois Curfman McInnes #else 1132dbb450caSBarry Smith tmp[garray[*jj++ + shift]] += fabs(*v++); 113304ca555eSLois Curfman McInnes #endif 113404ca555eSLois Curfman McInnes } 113504ca555eSLois Curfman McInnes MPI_Allreduce((void*)tmp,(void*)tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm); 113604ca555eSLois Curfman McInnes for ( j=0; j<aij->N; j++ ) { 113704ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 113804ca555eSLois Curfman McInnes } 113904ca555eSLois Curfman McInnes PETSCFREE(tmp); PETSCFREE(tmp2); 114004ca555eSLois Curfman McInnes } 114104ca555eSLois Curfman McInnes else if (type == NORM_INFINITY) { /* max row norm */ 114204ca555eSLois Curfman McInnes double normtemp = 0.0; 114304ca555eSLois Curfman McInnes for ( j=0; j<amat->m; j++ ) { 1144dbb450caSBarry Smith v = amat->a + amat->i[j] + shift; 114504ca555eSLois Curfman McInnes sum = 0.0; 114604ca555eSLois Curfman McInnes for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) { 114704ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 114804ca555eSLois Curfman McInnes sum += abs(*v); v++; 114904ca555eSLois Curfman McInnes #else 115004ca555eSLois Curfman McInnes sum += fabs(*v); v++; 115104ca555eSLois Curfman McInnes #endif 115204ca555eSLois Curfman McInnes } 1153dbb450caSBarry Smith v = bmat->a + bmat->i[j] + shift; 115404ca555eSLois Curfman McInnes for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) { 115504ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 115604ca555eSLois Curfman McInnes sum += abs(*v); v++; 115704ca555eSLois Curfman McInnes #else 115804ca555eSLois Curfman McInnes sum += fabs(*v); v++; 115904ca555eSLois Curfman McInnes #endif 116004ca555eSLois Curfman McInnes } 116104ca555eSLois Curfman McInnes if (sum > normtemp) normtemp = sum; 116204ca555eSLois Curfman McInnes MPI_Allreduce((void*)&normtemp,(void*)norm,1,MPI_DOUBLE,MPI_MAX,mat->comm); 116304ca555eSLois Curfman McInnes } 116404ca555eSLois Curfman McInnes } 116504ca555eSLois Curfman McInnes else { 116648d91487SBarry Smith SETERRQ(1,"MatNorm_MPIRow:No support for two norm"); 116704ca555eSLois Curfman McInnes } 116837fa93a5SLois Curfman McInnes } 1169855ac2c5SLois Curfman McInnes return 0; 1170855ac2c5SLois Curfman McInnes } 1171855ac2c5SLois Curfman McInnes 11720de55854SLois Curfman McInnes static int MatTranspose_MPIAIJ(Mat A,Mat *matout) 1173b7c46309SBarry Smith { 1174b7c46309SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1175dbb450caSBarry Smith Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data; 1176416022c9SBarry Smith int ierr,shift = Aloc->indexshift; 1177416022c9SBarry Smith Mat B; 1178b7c46309SBarry Smith int M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct; 1179b7c46309SBarry Smith Scalar *array; 1180b7c46309SBarry Smith 1181416022c9SBarry Smith if (!matout && M != N) SETERRQ(1,"MatTranspose_MPIAIJ:Square only in-place"); 1182b7c46309SBarry Smith ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,0,0,0,&B); 1183b7c46309SBarry Smith CHKERRQ(ierr); 1184b7c46309SBarry Smith 1185b7c46309SBarry Smith /* copy over the A part */ 1186ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->A->data; 1187b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1188b7c46309SBarry Smith row = a->rstart; 1189dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;} 1190b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1191416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1192b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 1193b7c46309SBarry Smith } 1194b7c46309SBarry Smith aj = Aloc->j; 1195dbb450caSBarry Smith for ( i=0; i<ai[m]|+shift; i++ ) {aj[i] -= a->cstart + shift;} 1196b7c46309SBarry Smith 1197b7c46309SBarry Smith /* copy over the B part */ 1198ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->B->data; 1199b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1200b7c46309SBarry Smith row = a->rstart; 12011987afe7SBarry Smith ct = cols = (int *) PETSCMALLOC( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols); 1202dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];} 1203b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1204416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1205b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 1206b7c46309SBarry Smith } 1207b7c46309SBarry Smith PETSCFREE(ct); 1208b7c46309SBarry Smith ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 1209b7c46309SBarry Smith ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 12100de55854SLois Curfman McInnes if (matout) { 12110de55854SLois Curfman McInnes *matout = B; 12120de55854SLois Curfman McInnes } else { 12130de55854SLois Curfman McInnes /* This isn't really an in-place transpose .... but free data structures from a */ 12140de55854SLois Curfman McInnes PETSCFREE(a->rowners); 12150de55854SLois Curfman McInnes ierr = MatDestroy(a->A); CHKERRQ(ierr); 12160de55854SLois Curfman McInnes ierr = MatDestroy(a->B); CHKERRQ(ierr); 12170de55854SLois Curfman McInnes if (a->colmap) PETSCFREE(a->colmap); 12180de55854SLois Curfman McInnes if (a->garray) PETSCFREE(a->garray); 12190de55854SLois Curfman McInnes if (a->lvec) VecDestroy(a->lvec); 12200de55854SLois Curfman McInnes if (a->Mvctx) VecScatterCtxDestroy(a->Mvctx); 12210de55854SLois Curfman McInnes PETSCFREE(a); 1222416022c9SBarry Smith PetscMemcpy(A,B,sizeof(struct _Mat)); 12230de55854SLois Curfman McInnes PETSCHEADERDESTROY(B); 12240de55854SLois Curfman McInnes } 1225b7c46309SBarry Smith return 0; 1226b7c46309SBarry Smith } 1227b7c46309SBarry Smith 1228fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *); 1229ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat,Mat *); 1230d6dfbf8fSBarry Smith 12318a729477SBarry Smith /* -------------------------------------------------------------------*/ 12322ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ, 123339e00950SLois Curfman McInnes MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ, 123444a69424SLois Curfman McInnes MatMult_MPIAIJ,MatMultAdd_MPIAIJ, 123544a69424SLois Curfman McInnes MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ, 1236299609e3SLois Curfman McInnes MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ, 1237299609e3SLois Curfman McInnes MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ, 1238299609e3SLois Curfman McInnes MatLUFactor_MPIAIJ,0, 123944a69424SLois Curfman McInnes MatRelax_MPIAIJ, 1240b7c46309SBarry Smith MatTranspose_MPIAIJ, 1241a66be287SLois Curfman McInnes MatGetInfo_MPIAIJ,0, 1242855ac2c5SLois Curfman McInnes MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ, 1243ee50ffe9SBarry Smith MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ, 12441eb62cbbSBarry Smith 0, 1245299609e3SLois Curfman McInnes MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ, 1246299609e3SLois Curfman McInnes MatGetReordering_MPIAIJ, 1247299609e3SLois Curfman McInnes MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0, 1248d1710a03SLois Curfman McInnes MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ, 1249299609e3SLois Curfman McInnes MatILUFactorSymbolic_MPIAIJ,0, 1250ff7509f2SBarry Smith 0,0,MatConvert_MPIAIJ,0,0,MatCopyPrivate_MPIAIJ}; 12518a729477SBarry Smith 12521987afe7SBarry Smith /*@C 1253ff756334SLois Curfman McInnes MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format 1254ff756334SLois Curfman McInnes (the default parallel PETSc format). 12558a729477SBarry Smith 12568a729477SBarry Smith Input Parameters: 12571eb62cbbSBarry Smith . comm - MPI communicator 12587d3e4905SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 12597d3e4905SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated 12607d3e4905SLois Curfman McInnes if N is given) 12617d3e4905SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 12627d3e4905SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated 12637d3e4905SLois Curfman McInnes if n is given) 1264ab693e5aSLois Curfman McInnes . d_nz - number of nonzeros per row in diagonal portion of local submatrix 1265ff756334SLois Curfman McInnes (same for all local rows) 1266ab693e5aSLois Curfman McInnes . d_nzz - number of nonzeros per row in diagonal portion of local submatrix 1267ab693e5aSLois Curfman McInnes or null (possibly different for each row). You must leave room 1268ab693e5aSLois Curfman McInnes for the diagonal entry even if it is zero. 1269ab693e5aSLois Curfman McInnes . o_nz - number of nonzeros per row in off-diagonal portion of local 1270ab693e5aSLois Curfman McInnes submatrix (same for all local rows). 1271ab693e5aSLois Curfman McInnes . o_nzz - number of nonzeros per row in off-diagonal portion of local 1272ab693e5aSLois Curfman McInnes submatrix or null (possibly different for each row). 12738a729477SBarry Smith 1274ff756334SLois Curfman McInnes Output Parameter: 12758a729477SBarry Smith . newmat - the matrix 12768a729477SBarry Smith 1277ff756334SLois Curfman McInnes Notes: 1278ff756334SLois Curfman McInnes The AIJ format (also called the Yale sparse matrix format or 1279ff756334SLois Curfman McInnes compressed row storage), is fully compatible with standard Fortran 77 1280*0002213bSLois Curfman McInnes storage. That is, the stored row and column indices can begin at 1281*0002213bSLois Curfman McInnes either one (as in Fortran) or zero. See the users manual for details. 1282ff756334SLois Curfman McInnes 1283ff756334SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 1284ff756334SLois Curfman McInnes (possibly both). 1285ff756334SLois Curfman McInnes 1286e0245417SLois Curfman McInnes Storage Information: 1287e0245417SLois Curfman McInnes For a square global matrix we define each processor's diagonal portion 1288e0245417SLois Curfman McInnes to be its local rows and the corresponding columns (a square submatrix); 1289e0245417SLois Curfman McInnes each processor's off-diagonal portion encompasses the remainder of the 1290e0245417SLois Curfman McInnes local matrix (a rectangular submatrix). 1291e0245417SLois Curfman McInnes 1292e0245417SLois Curfman McInnes The user can specify preallocated storage for the diagonal part of 1293e0245417SLois Curfman McInnes the local submatrix with either d_nz or d_nnz (not both). Set both 1294e0245417SLois Curfman McInnes d_nz and d_nnz to zero for PETSc to control dynamic memory allocation. 1295e0245417SLois Curfman McInnes Likewise, specify preallocated storage for the off-diagonal part of 1296e0245417SLois Curfman McInnes the local submatrix with o_nz or o_nnz (not both). 1297ff756334SLois Curfman McInnes 1298dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel 1299ff756334SLois Curfman McInnes 1300fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues() 13018a729477SBarry Smith @*/ 13021eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N, 13031eb62cbbSBarry Smith int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat) 13048a729477SBarry Smith { 13058a729477SBarry Smith Mat mat; 1306416022c9SBarry Smith Mat_MPIAIJ *a; 13076abc6512SBarry Smith int ierr, i,sum[2],work[2]; 1308416022c9SBarry Smith 13098a729477SBarry Smith *newmat = 0; 131044a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm); 1311a5a9c739SBarry Smith PLogObjectCreate(mat); 1312416022c9SBarry Smith mat->data = (void *) (a = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(a); 1313416022c9SBarry Smith PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 131444a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 131544a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 13168a729477SBarry Smith mat->factor = 0; 1317d6dfbf8fSBarry Smith 131864119d58SLois Curfman McInnes a->insertmode = NOT_SET_VALUES; 131917699dbbSLois Curfman McInnes MPI_Comm_rank(comm,&a->rank); 132017699dbbSLois Curfman McInnes MPI_Comm_size(comm,&a->size); 13211eb62cbbSBarry Smith 13221987afe7SBarry Smith if (m == PETSC_DECIDE && (d_nnz || o_nnz)) 13231987afe7SBarry Smith SETERRQ(1,"MatCreateMPIAIJ:Cannot have PETSc decide rows but set d_nnz or o_nnz"); 13241987afe7SBarry Smith 1325dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 13261eb62cbbSBarry Smith work[0] = m; work[1] = n; 1327d65a2f8fSBarry Smith MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm ); 1328dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE) M = sum[0]; 1329dbd7a890SLois Curfman McInnes if (N == PETSC_DECIDE) N = sum[1]; 13301eb62cbbSBarry Smith } 133117699dbbSLois Curfman McInnes if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);} 133217699dbbSLois Curfman McInnes if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);} 1333416022c9SBarry Smith a->m = m; 1334416022c9SBarry Smith a->n = n; 1335416022c9SBarry Smith a->N = N; 1336416022c9SBarry Smith a->M = M; 13371eb62cbbSBarry Smith 13381eb62cbbSBarry Smith /* build local table of row and column ownerships */ 133917699dbbSLois Curfman McInnes a->rowners = (int *) PETSCMALLOC(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 134017699dbbSLois Curfman McInnes PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+ 1341464493b3SBarry Smith sizeof(Mat_MPIAIJ)); 134217699dbbSLois Curfman McInnes a->cowners = a->rowners + a->size + 1; 1343416022c9SBarry Smith MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm); 1344416022c9SBarry Smith a->rowners[0] = 0; 134517699dbbSLois Curfman McInnes for ( i=2; i<=a->size; i++ ) { 1346416022c9SBarry Smith a->rowners[i] += a->rowners[i-1]; 13478a729477SBarry Smith } 134817699dbbSLois Curfman McInnes a->rstart = a->rowners[a->rank]; 134917699dbbSLois Curfman McInnes a->rend = a->rowners[a->rank+1]; 1350416022c9SBarry Smith MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm); 1351416022c9SBarry Smith a->cowners[0] = 0; 135217699dbbSLois Curfman McInnes for ( i=2; i<=a->size; i++ ) { 1353416022c9SBarry Smith a->cowners[i] += a->cowners[i-1]; 13548a729477SBarry Smith } 135517699dbbSLois Curfman McInnes a->cstart = a->cowners[a->rank]; 135617699dbbSLois Curfman McInnes a->cend = a->cowners[a->rank+1]; 13578a729477SBarry Smith 1358416022c9SBarry Smith ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&a->A); CHKERRQ(ierr); 1359416022c9SBarry Smith PLogObjectParent(mat,a->A); 1360416022c9SBarry Smith ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&a->B); CHKERRQ(ierr); 1361416022c9SBarry Smith PLogObjectParent(mat,a->B); 13628a729477SBarry Smith 13631eb62cbbSBarry Smith /* build cache for off array entries formed */ 1364416022c9SBarry Smith ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr); 1365416022c9SBarry Smith a->colmap = 0; 1366416022c9SBarry Smith a->garray = 0; 13678a729477SBarry Smith 13681eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 1369416022c9SBarry Smith a->lvec = 0; 1370416022c9SBarry Smith a->Mvctx = 0; 1371416022c9SBarry Smith a->assembled = 0; 13728a729477SBarry Smith 1373d6dfbf8fSBarry Smith *newmat = mat; 1374d6dfbf8fSBarry Smith return 0; 1375d6dfbf8fSBarry Smith } 1376c74985f6SBarry Smith 1377ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat matin,Mat *newmat) 1378d6dfbf8fSBarry Smith { 1379d6dfbf8fSBarry Smith Mat mat; 1380416022c9SBarry Smith Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data; 13812ee70a88SLois Curfman McInnes int ierr, len; 1382d6dfbf8fSBarry Smith 1383416022c9SBarry Smith if (!oldmat->assembled) SETERRQ(1,"MatCopyPrivate_MPIAIJ:Must assemble matrix"); 1384416022c9SBarry Smith *newmat = 0; 138544a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm); 1386a5a9c739SBarry Smith PLogObjectCreate(mat); 1387416022c9SBarry Smith mat->data = (void *) (a = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(a); 1388416022c9SBarry Smith PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 138944a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 139044a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 1391d6dfbf8fSBarry Smith mat->factor = matin->factor; 1392d6dfbf8fSBarry Smith 1393416022c9SBarry Smith a->m = oldmat->m; 1394416022c9SBarry Smith a->n = oldmat->n; 1395416022c9SBarry Smith a->M = oldmat->M; 1396416022c9SBarry Smith a->N = oldmat->N; 1397d6dfbf8fSBarry Smith 1398416022c9SBarry Smith a->assembled = 1; 1399416022c9SBarry Smith a->rstart = oldmat->rstart; 1400416022c9SBarry Smith a->rend = oldmat->rend; 1401416022c9SBarry Smith a->cstart = oldmat->cstart; 1402416022c9SBarry Smith a->cend = oldmat->cend; 140317699dbbSLois Curfman McInnes a->size = oldmat->size; 140417699dbbSLois Curfman McInnes a->rank = oldmat->rank; 140564119d58SLois Curfman McInnes a->insertmode = NOT_SET_VALUES; 1406d6dfbf8fSBarry Smith 140717699dbbSLois Curfman McInnes a->rowners = (int *) PETSCMALLOC((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners); 140817699dbbSLois Curfman McInnes PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ)); 140917699dbbSLois Curfman McInnes PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int)); 1410416022c9SBarry Smith ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 14112ee70a88SLois Curfman McInnes if (oldmat->colmap) { 1412416022c9SBarry Smith a->colmap = (int *) PETSCMALLOC((a->N)*sizeof(int));CHKPTRQ(a->colmap); 1413416022c9SBarry Smith PLogObjectMemory(mat,(a->N)*sizeof(int)); 1414416022c9SBarry Smith PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int)); 1415416022c9SBarry Smith } else a->colmap = 0; 1416ec8511deSBarry Smith if (oldmat->garray && (len = ((Mat_SeqAIJ *) (oldmat->B->data))->n)) { 1417416022c9SBarry Smith a->garray = (int *) PETSCMALLOC(len*sizeof(int)); CHKPTRQ(a->garray); 1418464493b3SBarry Smith PLogObjectMemory(mat,len*sizeof(int)); 1419416022c9SBarry Smith PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 1420416022c9SBarry Smith } else a->garray = 0; 1421d6dfbf8fSBarry Smith 1422416022c9SBarry Smith ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 1423416022c9SBarry Smith PLogObjectParent(mat,a->lvec); 1424416022c9SBarry Smith ierr = VecScatterCtxCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 1425416022c9SBarry Smith PLogObjectParent(mat,a->Mvctx); 1426416022c9SBarry Smith ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 1427416022c9SBarry Smith PLogObjectParent(mat,a->A); 1428416022c9SBarry Smith ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 1429416022c9SBarry Smith PLogObjectParent(mat,a->B); 14308a729477SBarry Smith *newmat = mat; 14318a729477SBarry Smith return 0; 14328a729477SBarry Smith } 1433416022c9SBarry Smith 1434416022c9SBarry Smith #include "sysio.h" 1435416022c9SBarry Smith 143602834360SBarry Smith int MatLoad_MPIAIJorMPIRow(Viewer bview,MatType type,Mat *newmat) 1437416022c9SBarry Smith { 1438d65a2f8fSBarry Smith Mat A; 1439416022c9SBarry Smith int i, nz, ierr, j,rstart, rend, fd; 1440d65a2f8fSBarry Smith Scalar *vals,*svals; 1441416022c9SBarry Smith PetscObject vobj = (PetscObject) bview; 1442416022c9SBarry Smith MPI_Comm comm = vobj->comm; 1443416022c9SBarry Smith MPI_Status status; 144417699dbbSLois Curfman McInnes int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 1445d65a2f8fSBarry Smith int *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols; 1446d65a2f8fSBarry Smith int tag = ((PetscObject)bview)->tag; 1447416022c9SBarry Smith 144817699dbbSLois Curfman McInnes MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 144917699dbbSLois Curfman McInnes if (!rank) { 1450416022c9SBarry Smith ierr = ViewerFileGetDescriptor_Private(bview,&fd); CHKERRQ(ierr); 1451416022c9SBarry Smith ierr = SYRead(fd,(char *)header,4,SYINT); CHKERRQ(ierr); 145202834360SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:not matrix object"); 1453416022c9SBarry Smith } 1454416022c9SBarry Smith 1455416022c9SBarry Smith MPI_Bcast(header+1,3,MPI_INT,0,comm); 1456416022c9SBarry Smith M = header[1]; N = header[2]; 1457416022c9SBarry Smith /* determine ownership of all rows */ 145817699dbbSLois Curfman McInnes m = M/size + ((M % size) > rank); 145917699dbbSLois Curfman McInnes rowners = (int *) PETSCMALLOC((size+2)*sizeof(int)); CHKPTRQ(rowners); 1460416022c9SBarry Smith MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm); 1461416022c9SBarry Smith rowners[0] = 0; 146217699dbbSLois Curfman McInnes for ( i=2; i<=size; i++ ) { 1463416022c9SBarry Smith rowners[i] += rowners[i-1]; 1464416022c9SBarry Smith } 146517699dbbSLois Curfman McInnes rstart = rowners[rank]; 146617699dbbSLois Curfman McInnes rend = rowners[rank+1]; 1467416022c9SBarry Smith 1468416022c9SBarry Smith /* distribute row lengths to all processors */ 1469416022c9SBarry Smith ourlens = (int*) PETSCMALLOC( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens); 1470416022c9SBarry Smith offlens = ourlens + (rend-rstart); 147117699dbbSLois Curfman McInnes if (!rank) { 1472416022c9SBarry Smith rowlengths = (int*) PETSCMALLOC( M*sizeof(int) ); CHKPTRQ(rowlengths); 1473416022c9SBarry Smith ierr = SYRead(fd,rowlengths,M,SYINT); CHKERRQ(ierr); 147417699dbbSLois Curfman McInnes sndcounts = (int*) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(sndcounts); 147517699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i]; 1476d65a2f8fSBarry Smith MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm); 14776ef5f50fSLois Curfman McInnes PETSCFREE(sndcounts); 1478416022c9SBarry Smith } 1479416022c9SBarry Smith else { 1480416022c9SBarry Smith MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm); 1481416022c9SBarry Smith } 1482416022c9SBarry Smith 148317699dbbSLois Curfman McInnes if (!rank) { 1484416022c9SBarry Smith /* calculate the number of nonzeros on each processor */ 148517699dbbSLois Curfman McInnes procsnz = (int*) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(procsnz); 148617699dbbSLois Curfman McInnes PetscZero(procsnz,size*sizeof(int)); 148717699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 1488416022c9SBarry Smith for ( j=rowners[i]; j< rowners[i+1]; j++ ) { 1489416022c9SBarry Smith procsnz[i] += rowlengths[j]; 1490416022c9SBarry Smith } 1491416022c9SBarry Smith } 14926ef5f50fSLois Curfman McInnes PETSCFREE(rowlengths); 1493416022c9SBarry Smith 1494416022c9SBarry Smith /* determine max buffer needed and allocate it */ 1495416022c9SBarry Smith maxnz = 0; 149617699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 1497416022c9SBarry Smith maxnz = PETSCMAX(maxnz,procsnz[i]); 1498416022c9SBarry Smith } 1499416022c9SBarry Smith cols = (int *) PETSCMALLOC( maxnz*sizeof(int) ); CHKPTRQ(cols); 1500416022c9SBarry Smith 1501416022c9SBarry Smith /* read in my part of the matrix column indices */ 1502416022c9SBarry Smith nz = procsnz[0]; 1503d65a2f8fSBarry Smith mycols = (int *) PETSCMALLOC( nz*sizeof(int) ); CHKPTRQ(mycols); 1504d65a2f8fSBarry Smith ierr = SYRead(fd,mycols,nz,SYINT); CHKERRQ(ierr); 1505d65a2f8fSBarry Smith 1506d65a2f8fSBarry Smith /* read in every one elses and ship off */ 150717699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1508d65a2f8fSBarry Smith nz = procsnz[i]; 1509416022c9SBarry Smith ierr = SYRead(fd,cols,nz,SYINT); CHKERRQ(ierr); 1510d65a2f8fSBarry Smith MPI_Send(cols,nz,MPI_INT,i,tag,comm); 1511d65a2f8fSBarry Smith } 1512d65a2f8fSBarry Smith PETSCFREE(cols); 1513416022c9SBarry Smith } 1514416022c9SBarry Smith else { 1515416022c9SBarry Smith /* determine buffer space needed for message */ 1516416022c9SBarry Smith nz = 0; 1517416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1518416022c9SBarry Smith nz += ourlens[i]; 1519416022c9SBarry Smith } 1520d65a2f8fSBarry Smith mycols = (int*) PETSCMALLOC( nz*sizeof(int) ); CHKPTRQ(mycols); 1521416022c9SBarry Smith 1522416022c9SBarry Smith /* receive message of column indices*/ 1523d65a2f8fSBarry Smith MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 1524416022c9SBarry Smith MPI_Get_count(&status,MPI_INT,&maxnz); 152502834360SBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file"); 1526416022c9SBarry Smith } 1527416022c9SBarry Smith 1528416022c9SBarry Smith /* loop over local rows, determining number of off diagonal entries */ 1529416022c9SBarry Smith PetscZero(offlens,m*sizeof(int)); 1530416022c9SBarry Smith jj = 0; 1531416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1532416022c9SBarry Smith for ( j=0; j<ourlens[i]; j++ ) { 1533d65a2f8fSBarry Smith if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 1534416022c9SBarry Smith jj++; 1535416022c9SBarry Smith } 1536416022c9SBarry Smith } 1537d65a2f8fSBarry Smith 1538d65a2f8fSBarry Smith /* create our matrix */ 1539416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1540416022c9SBarry Smith ourlens[i] -= offlens[i]; 1541416022c9SBarry Smith } 1542d65a2f8fSBarry Smith if (type == MATMPIAIJ) { 1543d65a2f8fSBarry Smith ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1544d65a2f8fSBarry Smith } 1545d65a2f8fSBarry Smith else if (type == MATMPIROW) { 1546d65a2f8fSBarry Smith ierr = MatCreateMPIRow(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1547d65a2f8fSBarry Smith } 1548d65a2f8fSBarry Smith A = *newmat; 1549d65a2f8fSBarry Smith MatSetOption(A,COLUMNS_SORTED); 1550d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1551d65a2f8fSBarry Smith ourlens[i] += offlens[i]; 1552d65a2f8fSBarry Smith } 1553416022c9SBarry Smith 155417699dbbSLois Curfman McInnes if (!rank) { 1555416022c9SBarry Smith vals = (Scalar *) PETSCMALLOC( maxnz*sizeof(Scalar) ); CHKPTRQ(vals); 1556416022c9SBarry Smith 1557416022c9SBarry Smith /* read in my part of the matrix numerical values */ 1558416022c9SBarry Smith nz = procsnz[0]; 1559416022c9SBarry Smith ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr); 1560d65a2f8fSBarry Smith 1561d65a2f8fSBarry Smith /* insert into matrix */ 1562d65a2f8fSBarry Smith jj = rstart; 1563d65a2f8fSBarry Smith smycols = mycols; 1564d65a2f8fSBarry Smith svals = vals; 1565d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1566d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1567d65a2f8fSBarry Smith smycols += ourlens[i]; 1568d65a2f8fSBarry Smith svals += ourlens[i]; 1569d65a2f8fSBarry Smith jj++; 1570416022c9SBarry Smith } 1571416022c9SBarry Smith 1572d65a2f8fSBarry Smith /* read in other processors and ship out */ 157317699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1574416022c9SBarry Smith nz = procsnz[i]; 1575416022c9SBarry Smith ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr); 1576d65a2f8fSBarry Smith MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 1577416022c9SBarry Smith } 15786ef5f50fSLois Curfman McInnes PETSCFREE(procsnz); 1579416022c9SBarry Smith } 1580d65a2f8fSBarry Smith else { 1581d65a2f8fSBarry Smith /* receive numeric values */ 1582d65a2f8fSBarry Smith vals = (Scalar*) PETSCMALLOC( nz*sizeof(Scalar) ); CHKPTRQ(vals); 1583416022c9SBarry Smith 1584d65a2f8fSBarry Smith /* receive message of values*/ 1585d65a2f8fSBarry Smith MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 1586d65a2f8fSBarry Smith MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 158702834360SBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file"); 1588d65a2f8fSBarry Smith 1589d65a2f8fSBarry Smith /* insert into matrix */ 1590d65a2f8fSBarry Smith jj = rstart; 1591d65a2f8fSBarry Smith smycols = mycols; 1592d65a2f8fSBarry Smith svals = vals; 1593d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1594d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1595d65a2f8fSBarry Smith smycols += ourlens[i]; 1596d65a2f8fSBarry Smith svals += ourlens[i]; 1597d65a2f8fSBarry Smith jj++; 1598d65a2f8fSBarry Smith } 1599d65a2f8fSBarry Smith } 16006ef5f50fSLois Curfman McInnes PETSCFREE(ourlens); PETSCFREE(vals); PETSCFREE(mycols); PETSCFREE(rowners); 1601d65a2f8fSBarry Smith 1602d65a2f8fSBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1603d65a2f8fSBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1604416022c9SBarry Smith return 0; 1605416022c9SBarry Smith } 1606