xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 0002213b90195bcd405ac4cf164e4be01d02f7a5)
1cb512458SBarry Smith #ifndef lint
2*0002213bSLois Curfman McInnes static char vcid[] = "$Id: mpiaij.c,v 1.91 1995/10/19 22:22:37 curfman Exp curfman $";
3cb512458SBarry Smith #endif
48a729477SBarry Smith 
51eb62cbbSBarry Smith #include "mpiaij.h"
68a729477SBarry Smith #include "vec/vecimpl.h"
7d6dfbf8fSBarry Smith #include "inline/spops.h"
88a729477SBarry Smith 
99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column
109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
119e25ed09SBarry Smith storage of the matrix.  This is done in a non scable way since the
129e25ed09SBarry Smith length of colmap equals the global matrix length.
139e25ed09SBarry Smith */
14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat)
159e25ed09SBarry Smith {
1644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
17ec8511deSBarry Smith   Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data;
18416022c9SBarry Smith   int        n = B->n,i,shift = B->indexshift;
19dbb450caSBarry Smith 
2078b31e54SBarry Smith   aij->colmap = (int *) PETSCMALLOC(aij->N*sizeof(int));CHKPTRQ(aij->colmap);
21464493b3SBarry Smith   PLogObjectMemory(mat,aij->N*sizeof(int));
22416022c9SBarry Smith   PetscZero(aij->colmap,aij->N*sizeof(int));
23dbb450caSBarry Smith   for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i-shift;
249e25ed09SBarry Smith   return 0;
259e25ed09SBarry Smith }
269e25ed09SBarry Smith 
272493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat);
282493cbb0SBarry Smith 
2951c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm)
30299609e3SLois Curfman McInnes {
31299609e3SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
32299609e3SLois Curfman McInnes   int ierr;
3317699dbbSLois Curfman McInnes   if (aij->size == 1) {
3451c98ccdSLois Curfman McInnes     ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr);
3548d91487SBarry Smith   } else SETERRQ(1,"MatGetReordering_MPIAIJ:not supported in parallel");
36299609e3SLois Curfman McInnes   return 0;
37299609e3SLois Curfman McInnes }
38299609e3SLois Curfman McInnes 
392ee70a88SLois Curfman McInnes static int MatSetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,
401eb62cbbSBarry Smith                                int *idxn,Scalar *v,InsertMode addv)
418a729477SBarry Smith {
4244a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
43dbb450caSBarry Smith   Mat_SeqAIJ *C = (Mat_SeqAIJ*) aij->A->data;
441eb62cbbSBarry Smith   int        ierr,i,j, rstart = aij->rstart, rend = aij->rend;
451eb62cbbSBarry Smith   int        cstart = aij->cstart, cend = aij->cend,row,col;
46dbb450caSBarry Smith   int        shift = C->indexshift;
478a729477SBarry Smith 
4864119d58SLois Curfman McInnes   if (aij->insertmode != NOT_SET_VALUES && aij->insertmode != addv) {
4948d91487SBarry Smith     SETERRQ(1,"MatSetValues_MPIAIJ:Cannot mix inserts and adds");
508a729477SBarry Smith   }
511eb62cbbSBarry Smith   aij->insertmode = addv;
528a729477SBarry Smith   for ( i=0; i<m; i++ ) {
53bbb6d6a8SBarry Smith     if (idxm[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row");
54bbb6d6a8SBarry Smith     if (idxm[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large");
551eb62cbbSBarry Smith     if (idxm[i] >= rstart && idxm[i] < rend) {
561eb62cbbSBarry Smith       row = idxm[i] - rstart;
571eb62cbbSBarry Smith       for ( j=0; j<n; j++ ) {
58bbb6d6a8SBarry Smith         if (idxn[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column");
59bbb6d6a8SBarry Smith         if (idxn[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large");
601eb62cbbSBarry Smith         if (idxn[j] >= cstart && idxn[j] < cend){
611eb62cbbSBarry Smith           col = idxn[j] - cstart;
6278b31e54SBarry Smith           ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr);
631eb62cbbSBarry Smith         }
641eb62cbbSBarry Smith         else {
65d6dfbf8fSBarry Smith           if (aij->assembled) {
66b7c46309SBarry Smith             if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);}
67dbb450caSBarry Smith             col = aij->colmap[idxn[j]] + shift;
68ec8511deSBarry Smith             if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
692493cbb0SBarry Smith               ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
702493cbb0SBarry Smith               col =  idxn[j];
71d6dfbf8fSBarry Smith             }
729e25ed09SBarry Smith           }
739e25ed09SBarry Smith           else col = idxn[j];
7478b31e54SBarry Smith           ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr);
751eb62cbbSBarry Smith         }
761eb62cbbSBarry Smith       }
771eb62cbbSBarry Smith     }
781eb62cbbSBarry Smith     else {
79416022c9SBarry Smith       ierr = StashValues_Private(&aij->stash,idxm[i],n,idxn,v+i*n,addv);CHKERRQ(ierr);
801eb62cbbSBarry Smith     }
818a729477SBarry Smith   }
828a729477SBarry Smith   return 0;
838a729477SBarry Smith }
848a729477SBarry Smith 
85fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode)
868a729477SBarry Smith {
8744a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
88d6dfbf8fSBarry Smith   MPI_Comm    comm = mat->comm;
8917699dbbSLois Curfman McInnes   int         size = aij->size, *owners = aij->rowners;
9017699dbbSLois Curfman McInnes   int         rank = aij->rank,tag = mat->tag, *owner,*starts,count,ierr;
911eb62cbbSBarry Smith   MPI_Request *send_waits,*recv_waits;
926abc6512SBarry Smith   int         *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
931eb62cbbSBarry Smith   InsertMode  addv;
941eb62cbbSBarry Smith   Scalar      *rvalues,*svalues;
951eb62cbbSBarry Smith 
961eb62cbbSBarry Smith   /* make sure all processors are either in INSERTMODE or ADDMODE */
97d65a2f8fSBarry Smith   MPI_Allreduce(&aij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);
98dbb450caSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
99bbb6d6a8SBarry Smith     SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added");
1001eb62cbbSBarry Smith   }
1011eb62cbbSBarry Smith   aij->insertmode = addv; /* in case this processor had no cache */
1021eb62cbbSBarry Smith 
1031eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
10417699dbbSLois Curfman McInnes   nprocs = (int *) PETSCMALLOC( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
10517699dbbSLois Curfman McInnes   PetscZero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
10678b31e54SBarry Smith   owner = (int *) PETSCMALLOC( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
1071eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
1081eb62cbbSBarry Smith     idx = aij->stash.idx[i];
10917699dbbSLois Curfman McInnes     for ( j=0; j<size; j++ ) {
1101eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
1111eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
1128a729477SBarry Smith       }
1138a729477SBarry Smith     }
1148a729477SBarry Smith   }
11517699dbbSLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
1161eb62cbbSBarry Smith 
1171eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
11817699dbbSLois Curfman McInnes   work = (int *) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(work);
11917699dbbSLois Curfman McInnes   MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);
12017699dbbSLois Curfman McInnes   nreceives = work[rank];
12117699dbbSLois Curfman McInnes   MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);
12217699dbbSLois Curfman McInnes   nmax = work[rank];
12378b31e54SBarry Smith   PETSCFREE(work);
1241eb62cbbSBarry Smith 
1251eb62cbbSBarry Smith   /* post receives:
1261eb62cbbSBarry Smith        1) each message will consist of ordered pairs
1271eb62cbbSBarry Smith      (global index,value) we store the global index as a double
128d6dfbf8fSBarry Smith      to simplify the message passing.
1291eb62cbbSBarry Smith        2) since we don't know how long each individual message is we
1301eb62cbbSBarry Smith      allocate the largest needed buffer for each receive. Potentially
1311eb62cbbSBarry Smith      this is a lot of wasted space.
1321eb62cbbSBarry Smith 
1331eb62cbbSBarry Smith 
1341eb62cbbSBarry Smith        This could be done better.
1351eb62cbbSBarry Smith   */
13678b31e54SBarry Smith   rvalues = (Scalar *) PETSCMALLOC(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));
13778b31e54SBarry Smith   CHKPTRQ(rvalues);
13878b31e54SBarry Smith   recv_waits = (MPI_Request *) PETSCMALLOC((nreceives+1)*sizeof(MPI_Request));
13978b31e54SBarry Smith   CHKPTRQ(recv_waits);
1401eb62cbbSBarry Smith   for ( i=0; i<nreceives; i++ ) {
141416022c9SBarry Smith     MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,
1421eb62cbbSBarry Smith               comm,recv_waits+i);
1431eb62cbbSBarry Smith   }
1441eb62cbbSBarry Smith 
1451eb62cbbSBarry Smith   /* do sends:
1461eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
1471eb62cbbSBarry Smith          the ith processor
1481eb62cbbSBarry Smith   */
149416022c9SBarry Smith   svalues = (Scalar *) PETSCMALLOC(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues);
15078b31e54SBarry Smith   send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request));
15178b31e54SBarry Smith   CHKPTRQ(send_waits);
15217699dbbSLois Curfman McInnes   starts = (int *) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(starts);
1531eb62cbbSBarry Smith   starts[0] = 0;
15417699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
1551eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
1561eb62cbbSBarry Smith     svalues[3*starts[owner[i]]]       = (Scalar)  aij->stash.idx[i];
1571eb62cbbSBarry Smith     svalues[3*starts[owner[i]]+1]     = (Scalar)  aij->stash.idy[i];
1581eb62cbbSBarry Smith     svalues[3*(starts[owner[i]]++)+2] =  aij->stash.array[i];
1591eb62cbbSBarry Smith   }
16078b31e54SBarry Smith   PETSCFREE(owner);
1611eb62cbbSBarry Smith   starts[0] = 0;
16217699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
1631eb62cbbSBarry Smith   count = 0;
16417699dbbSLois Curfman McInnes   for ( i=0; i<size; i++ ) {
1651eb62cbbSBarry Smith     if (procs[i]) {
166416022c9SBarry Smith       MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,
1671eb62cbbSBarry Smith                 comm,send_waits+count++);
1681eb62cbbSBarry Smith     }
1691eb62cbbSBarry Smith   }
17078b31e54SBarry Smith   PETSCFREE(starts); PETSCFREE(nprocs);
1711eb62cbbSBarry Smith 
1721eb62cbbSBarry Smith   /* Free cache space */
17378b31e54SBarry Smith   ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr);
1741eb62cbbSBarry Smith 
1751eb62cbbSBarry Smith   aij->svalues    = svalues;    aij->rvalues    = rvalues;
1761eb62cbbSBarry Smith   aij->nsends     = nsends;     aij->nrecvs     = nreceives;
1771eb62cbbSBarry Smith   aij->send_waits = send_waits; aij->recv_waits = recv_waits;
1781eb62cbbSBarry Smith   aij->rmax       = nmax;
1791eb62cbbSBarry Smith 
1801eb62cbbSBarry Smith   return 0;
1811eb62cbbSBarry Smith }
18244a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat);
1831eb62cbbSBarry Smith 
184fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode)
1851eb62cbbSBarry Smith {
18644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
187dbb450caSBarry Smith   Mat_SeqAIJ *C = (Mat_SeqAIJ *) aij->A->data;
1881eb62cbbSBarry Smith   MPI_Status  *send_status,recv_status;
189416022c9SBarry Smith   int         imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr;
190416022c9SBarry Smith   int         row,col,other_disassembled,shift = C->indexshift;
1911eb62cbbSBarry Smith   Scalar      *values,val;
1921eb62cbbSBarry Smith   InsertMode  addv = aij->insertmode;
1931eb62cbbSBarry Smith 
1941eb62cbbSBarry Smith   /*  wait on receives */
1951eb62cbbSBarry Smith   while (count) {
196d6dfbf8fSBarry Smith     MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status);
1971eb62cbbSBarry Smith     /* unpack receives into our local space */
198d6dfbf8fSBarry Smith     values = aij->rvalues + 3*imdex*aij->rmax;
199c60448a5SBarry Smith     MPI_Get_count(&recv_status,MPIU_SCALAR,&n);
2001eb62cbbSBarry Smith     n = n/3;
2011eb62cbbSBarry Smith     for ( i=0; i<n; i++ ) {
2021eb62cbbSBarry Smith       row = (int) PETSCREAL(values[3*i]) - aij->rstart;
2031eb62cbbSBarry Smith       col = (int) PETSCREAL(values[3*i+1]);
2041eb62cbbSBarry Smith       val = values[3*i+2];
2051eb62cbbSBarry Smith       if (col >= aij->cstart && col < aij->cend) {
2061eb62cbbSBarry Smith         col -= aij->cstart;
2071eb62cbbSBarry Smith         MatSetValues(aij->A,1,&row,1,&col,&val,addv);
2081eb62cbbSBarry Smith       }
2091eb62cbbSBarry Smith       else {
210d6dfbf8fSBarry Smith         if (aij->assembled) {
211b7c46309SBarry Smith           if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);}
212dbb450caSBarry Smith           col = aij->colmap[col] + shift;
213ec8511deSBarry Smith           if (col < 0  && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
2142493cbb0SBarry Smith             ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
2152493cbb0SBarry Smith             col = (int) PETSCREAL(values[3*i+1]);
216d6dfbf8fSBarry Smith           }
2179e25ed09SBarry Smith         }
2181eb62cbbSBarry Smith         MatSetValues(aij->B,1,&row,1,&col,&val,addv);
2191eb62cbbSBarry Smith       }
2201eb62cbbSBarry Smith     }
2211eb62cbbSBarry Smith     count--;
2221eb62cbbSBarry Smith   }
22378b31e54SBarry Smith   PETSCFREE(aij->recv_waits); PETSCFREE(aij->rvalues);
2241eb62cbbSBarry Smith 
2251eb62cbbSBarry Smith   /* wait on sends */
2261eb62cbbSBarry Smith   if (aij->nsends) {
22778b31e54SBarry Smith     send_status = (MPI_Status *) PETSCMALLOC(aij->nsends*sizeof(MPI_Status));
22878b31e54SBarry Smith     CHKPTRQ(send_status);
2291eb62cbbSBarry Smith     MPI_Waitall(aij->nsends,aij->send_waits,send_status);
23078b31e54SBarry Smith     PETSCFREE(send_status);
2311eb62cbbSBarry Smith   }
23278b31e54SBarry Smith   PETSCFREE(aij->send_waits); PETSCFREE(aij->svalues);
2331eb62cbbSBarry Smith 
23464119d58SLois Curfman McInnes   aij->insertmode = NOT_SET_VALUES;
23578b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr);
23678b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr);
2371eb62cbbSBarry Smith 
2382493cbb0SBarry Smith   /* determine if any processor has disassembled, if so we must
2392493cbb0SBarry Smith      also disassemble ourselfs, in order that we may reassemble. */
240416022c9SBarry Smith   MPI_Allreduce(&aij->assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);
2412493cbb0SBarry Smith   if (aij->assembled && !other_disassembled) {
2422493cbb0SBarry Smith     ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
2432493cbb0SBarry Smith   }
2442493cbb0SBarry Smith 
2455e42470aSBarry Smith   if (!aij->assembled && mode == FINAL_ASSEMBLY) {
24678b31e54SBarry Smith     ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr);
247d6dfbf8fSBarry Smith     aij->assembled = 1;
2485e42470aSBarry Smith   }
24978b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr);
25078b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr);
2515e42470aSBarry Smith 
2528a729477SBarry Smith   return 0;
2538a729477SBarry Smith }
2548a729477SBarry Smith 
2552ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A)
2561eb62cbbSBarry Smith {
25744a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data;
258dbd7a890SLois Curfman McInnes   int        ierr;
25978b31e54SBarry Smith   ierr = MatZeroEntries(l->A); CHKERRQ(ierr);
26078b31e54SBarry Smith   ierr = MatZeroEntries(l->B); CHKERRQ(ierr);
2611eb62cbbSBarry Smith   return 0;
2621eb62cbbSBarry Smith }
2631eb62cbbSBarry Smith 
2641eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the
2651eb62cbbSBarry Smith    matrix is square and the column and row owerships are identical.
2661eb62cbbSBarry Smith    This is a BUG. The only way to fix it seems to be to access
2671eb62cbbSBarry Smith    aij->A and aij->B directly and not through the MatZeroRows()
2681eb62cbbSBarry Smith    routine.
2691eb62cbbSBarry Smith */
27044a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag)
2711eb62cbbSBarry Smith {
27244a69424SLois Curfman McInnes   Mat_MPIAIJ     *l = (Mat_MPIAIJ *) A->data;
27317699dbbSLois Curfman McInnes   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
2746abc6512SBarry Smith   int            *procs,*nprocs,j,found,idx,nsends,*work;
27517699dbbSLois Curfman McInnes   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
2765392566eSBarry Smith   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
277d6dfbf8fSBarry Smith   int            *lens,imdex,*lrows,*values;
278d6dfbf8fSBarry Smith   MPI_Comm       comm = A->comm;
2791eb62cbbSBarry Smith   MPI_Request    *send_waits,*recv_waits;
2801eb62cbbSBarry Smith   MPI_Status     recv_status,*send_status;
2811eb62cbbSBarry Smith   IS             istmp;
2821eb62cbbSBarry Smith 
28348d91487SBarry Smith   if (!l->assembled) SETERRQ(1,"MatZeroRows_MPIAIJ:Must assemble matrix");
28478b31e54SBarry Smith   ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr);
28578b31e54SBarry Smith   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
2861eb62cbbSBarry Smith 
2871eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
28817699dbbSLois Curfman McInnes   nprocs = (int *) PETSCMALLOC( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
28917699dbbSLois Curfman McInnes   PetscZero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
29078b31e54SBarry Smith   owner = (int *) PETSCMALLOC((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
2911eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
2921eb62cbbSBarry Smith     idx = rows[i];
2931eb62cbbSBarry Smith     found = 0;
29417699dbbSLois Curfman McInnes     for ( j=0; j<size; j++ ) {
2951eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
2961eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
2971eb62cbbSBarry Smith       }
2981eb62cbbSBarry Smith     }
299bbb6d6a8SBarry Smith     if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range");
3001eb62cbbSBarry Smith   }
30117699dbbSLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
3021eb62cbbSBarry Smith 
3031eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
30417699dbbSLois Curfman McInnes   work = (int *) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(work);
30517699dbbSLois Curfman McInnes   MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);
30617699dbbSLois Curfman McInnes   nrecvs = work[rank];
30717699dbbSLois Curfman McInnes   MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);
30817699dbbSLois Curfman McInnes   nmax = work[rank];
30978b31e54SBarry Smith   PETSCFREE(work);
3101eb62cbbSBarry Smith 
3111eb62cbbSBarry Smith   /* post receives:   */
31278b31e54SBarry Smith   rvalues = (int *) PETSCMALLOC((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */
31378b31e54SBarry Smith   CHKPTRQ(rvalues);
31478b31e54SBarry Smith   recv_waits = (MPI_Request *) PETSCMALLOC((nrecvs+1)*sizeof(MPI_Request));
31578b31e54SBarry Smith   CHKPTRQ(recv_waits);
3161eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
317416022c9SBarry Smith     MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);
3181eb62cbbSBarry Smith   }
3191eb62cbbSBarry Smith 
3201eb62cbbSBarry Smith   /* do sends:
3211eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
3221eb62cbbSBarry Smith          the ith processor
3231eb62cbbSBarry Smith   */
32478b31e54SBarry Smith   svalues = (int *) PETSCMALLOC( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
32578b31e54SBarry Smith   send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request));
32678b31e54SBarry Smith   CHKPTRQ(send_waits);
32717699dbbSLois Curfman McInnes   starts = (int *) PETSCMALLOC( (size+1)*sizeof(int) ); CHKPTRQ(starts);
3281eb62cbbSBarry Smith   starts[0] = 0;
32917699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3301eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
3311eb62cbbSBarry Smith     svalues[starts[owner[i]]++] = rows[i];
3321eb62cbbSBarry Smith   }
3331eb62cbbSBarry Smith   ISRestoreIndices(is,&rows);
3341eb62cbbSBarry Smith 
3351eb62cbbSBarry Smith   starts[0] = 0;
33617699dbbSLois Curfman McInnes   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3371eb62cbbSBarry Smith   count = 0;
33817699dbbSLois Curfman McInnes   for ( i=0; i<size; i++ ) {
3391eb62cbbSBarry Smith     if (procs[i]) {
340416022c9SBarry Smith       MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);
3411eb62cbbSBarry Smith     }
3421eb62cbbSBarry Smith   }
34378b31e54SBarry Smith   PETSCFREE(starts);
3441eb62cbbSBarry Smith 
34517699dbbSLois Curfman McInnes   base = owners[rank];
3461eb62cbbSBarry Smith 
3471eb62cbbSBarry Smith   /*  wait on receives */
34878b31e54SBarry Smith   lens   = (int *) PETSCMALLOC( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
3491eb62cbbSBarry Smith   source = lens + nrecvs;
3501eb62cbbSBarry Smith   count  = nrecvs; slen = 0;
3511eb62cbbSBarry Smith   while (count) {
352d6dfbf8fSBarry Smith     MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);
3531eb62cbbSBarry Smith     /* unpack receives into our local space */
3541eb62cbbSBarry Smith     MPI_Get_count(&recv_status,MPI_INT,&n);
355d6dfbf8fSBarry Smith     source[imdex]  = recv_status.MPI_SOURCE;
356d6dfbf8fSBarry Smith     lens[imdex]  = n;
3571eb62cbbSBarry Smith     slen += n;
3581eb62cbbSBarry Smith     count--;
3591eb62cbbSBarry Smith   }
36078b31e54SBarry Smith   PETSCFREE(recv_waits);
3611eb62cbbSBarry Smith 
3621eb62cbbSBarry Smith   /* move the data into the send scatter */
36378b31e54SBarry Smith   lrows = (int *) PETSCMALLOC( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
3641eb62cbbSBarry Smith   count = 0;
3651eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
3661eb62cbbSBarry Smith     values = rvalues + i*nmax;
3671eb62cbbSBarry Smith     for ( j=0; j<lens[i]; j++ ) {
3681eb62cbbSBarry Smith       lrows[count++] = values[j] - base;
3691eb62cbbSBarry Smith     }
3701eb62cbbSBarry Smith   }
37178b31e54SBarry Smith   PETSCFREE(rvalues); PETSCFREE(lens);
37278b31e54SBarry Smith   PETSCFREE(owner); PETSCFREE(nprocs);
3731eb62cbbSBarry Smith 
3741eb62cbbSBarry Smith   /* actually zap the local rows */
375416022c9SBarry Smith   ierr = ISCreateSeq(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
376464493b3SBarry Smith   PLogObjectParent(A,istmp);
377416022c9SBarry Smith   PETSCFREE(lrows);
37878b31e54SBarry Smith   ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr);
37978b31e54SBarry Smith   ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr);
38078b31e54SBarry Smith   ierr = ISDestroy(istmp); CHKERRQ(ierr);
3811eb62cbbSBarry Smith 
3821eb62cbbSBarry Smith   /* wait on sends */
3831eb62cbbSBarry Smith   if (nsends) {
38478b31e54SBarry Smith     send_status = (MPI_Status *) PETSCMALLOC(nsends*sizeof(MPI_Status));
38578b31e54SBarry Smith     CHKPTRQ(send_status);
3861eb62cbbSBarry Smith     MPI_Waitall(nsends,send_waits,send_status);
38778b31e54SBarry Smith     PETSCFREE(send_status);
3881eb62cbbSBarry Smith   }
38978b31e54SBarry Smith   PETSCFREE(send_waits); PETSCFREE(svalues);
3901eb62cbbSBarry Smith 
3911eb62cbbSBarry Smith   return 0;
3921eb62cbbSBarry Smith }
3931eb62cbbSBarry Smith 
394416022c9SBarry Smith static int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy)
3951eb62cbbSBarry Smith {
396416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
3971eb62cbbSBarry Smith   int        ierr;
398416022c9SBarry Smith 
39948d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix");
40064119d58SLois Curfman McInnes   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
401416022c9SBarry Smith   ierr = MatMult(a->A,xx,yy); CHKERRQ(ierr);
40264119d58SLois Curfman McInnes   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
403416022c9SBarry Smith   ierr = MatMultAdd(a->B,a->lvec,yy,yy); CHKERRQ(ierr);
4041eb62cbbSBarry Smith   return 0;
4051eb62cbbSBarry Smith }
4061eb62cbbSBarry Smith 
407416022c9SBarry Smith static int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
408da3a660dSBarry Smith {
409416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
410da3a660dSBarry Smith   int        ierr;
41148d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix");
41264119d58SLois Curfman McInnes   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
413416022c9SBarry Smith   ierr = MatMultAdd(a->A,xx,yy,zz); CHKERRQ(ierr);
41464119d58SLois Curfman McInnes   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
415416022c9SBarry Smith   ierr = MatMultAdd(a->B,a->lvec,zz,zz); CHKERRQ(ierr);
416da3a660dSBarry Smith   return 0;
417da3a660dSBarry Smith }
418da3a660dSBarry Smith 
419416022c9SBarry Smith static int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy)
420da3a660dSBarry Smith {
421416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
422da3a660dSBarry Smith   int        ierr;
423da3a660dSBarry Smith 
42448d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMulTrans_MPIAIJ:must assemble matrix");
425da3a660dSBarry Smith   /* do nondiagonal part */
426416022c9SBarry Smith   ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr);
427da3a660dSBarry Smith   /* send it on its way */
428416022c9SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,
42964119d58SLois Curfman McInnes                 (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
430da3a660dSBarry Smith   /* do local part */
431416022c9SBarry Smith   ierr = MatMultTrans(a->A,xx,yy); CHKERRQ(ierr);
432da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
433da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
434da3a660dSBarry Smith   /* but is not perhaps always true. */
435416022c9SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,
43664119d58SLois Curfman McInnes                   (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
437da3a660dSBarry Smith   return 0;
438da3a660dSBarry Smith }
439da3a660dSBarry Smith 
440416022c9SBarry Smith static int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
441da3a660dSBarry Smith {
442416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
443da3a660dSBarry Smith   int        ierr;
444da3a660dSBarry Smith 
44548d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMulTransAdd_MPIAIJ:must assemble matrix");
446da3a660dSBarry Smith   /* do nondiagonal part */
447416022c9SBarry Smith   ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr);
448da3a660dSBarry Smith   /* send it on its way */
449416022c9SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,
45064119d58SLois Curfman McInnes                  (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
451da3a660dSBarry Smith   /* do local part */
452416022c9SBarry Smith   ierr = MatMultTransAdd(a->A,xx,yy,zz); CHKERRQ(ierr);
453da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
454da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
455da3a660dSBarry Smith   /* but is not perhaps always true. */
456416022c9SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,
45764119d58SLois Curfman McInnes                   (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
458da3a660dSBarry Smith   return 0;
459da3a660dSBarry Smith }
460da3a660dSBarry Smith 
4611eb62cbbSBarry Smith /*
4621eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
4631eb62cbbSBarry Smith    diagonal block
4641eb62cbbSBarry Smith */
465416022c9SBarry Smith static int MatGetDiagonal_MPIAIJ(Mat A,Vec v)
4661eb62cbbSBarry Smith {
467416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
46848d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatGetDiag_MPIAIJ:must assemble matrix");
469416022c9SBarry Smith   return MatGetDiagonal(a->A,v);
4701eb62cbbSBarry Smith }
4711eb62cbbSBarry Smith 
47244a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj)
4731eb62cbbSBarry Smith {
4741eb62cbbSBarry Smith   Mat        mat = (Mat) obj;
47544a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
4761eb62cbbSBarry Smith   int        ierr;
477a5a9c739SBarry Smith #if defined(PETSC_LOG)
4786e35fa57SLois Curfman McInnes   PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N);
479a5a9c739SBarry Smith #endif
48078b31e54SBarry Smith   PETSCFREE(aij->rowners);
48178b31e54SBarry Smith   ierr = MatDestroy(aij->A); CHKERRQ(ierr);
48278b31e54SBarry Smith   ierr = MatDestroy(aij->B); CHKERRQ(ierr);
48378b31e54SBarry Smith   if (aij->colmap) PETSCFREE(aij->colmap);
48478b31e54SBarry Smith   if (aij->garray) PETSCFREE(aij->garray);
4851eb62cbbSBarry Smith   if (aij->lvec)   VecDestroy(aij->lvec);
4861eb62cbbSBarry Smith   if (aij->Mvctx)  VecScatterCtxDestroy(aij->Mvctx);
48778b31e54SBarry Smith   PETSCFREE(aij);
488a5a9c739SBarry Smith   PLogObjectDestroy(mat);
489a5a9c739SBarry Smith   PETSCHEADERDESTROY(mat);
4901eb62cbbSBarry Smith   return 0;
4911eb62cbbSBarry Smith }
4927857610eSBarry Smith #include "draw.h"
493b16a3bb1SBarry Smith #include "pinclude/pviewer.h"
494ee50ffe9SBarry Smith 
495416022c9SBarry Smith static int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer)
4961eb62cbbSBarry Smith {
497416022c9SBarry Smith   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
498416022c9SBarry Smith   int         ierr;
499416022c9SBarry Smith 
50017699dbbSLois Curfman McInnes   if (aij->size == 1) {
501416022c9SBarry Smith     ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
502416022c9SBarry Smith   }
503a523beb4SLois Curfman McInnes   else SETERRQ(1,"MatView_MPIAIJ_Binary:Only uniprocessor output supported");
504416022c9SBarry Smith   return 0;
505416022c9SBarry Smith }
506416022c9SBarry Smith 
507416022c9SBarry Smith static int MatView_MPIAIJ_ASCIIorDraw(Mat mat,Viewer viewer)
508416022c9SBarry Smith {
50944a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
510dbb450caSBarry Smith   Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data;
511416022c9SBarry Smith   int         ierr, format,shift = C->indexshift;
512d13ab20cSBarry Smith   PetscObject vobj = (PetscObject) viewer;
513d636dbe3SBarry Smith   FILE        *fd;
514416022c9SBarry Smith 
515416022c9SBarry Smith   if (vobj->type == ASCII_FILE_VIEWER || vobj->type == ASCII_FILES_VIEWER) {
516416022c9SBarry Smith     ierr = ViewerFileGetFormat_Private(viewer,&format);
517416022c9SBarry Smith     if (format == FILE_FORMAT_INFO) {
518416022c9SBarry Smith       return 0;
519416022c9SBarry Smith     }
520416022c9SBarry Smith   }
521416022c9SBarry Smith 
522416022c9SBarry Smith   if (vobj->type == ASCII_FILE_VIEWER) {
523d636dbe3SBarry Smith     ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr);
5247f813858SBarry Smith     MPIU_Seq_begin(mat->comm,1);
525d13ab20cSBarry Smith     fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n",
52617699dbbSLois Curfman McInnes            aij->rank,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart,
5271eb62cbbSBarry Smith            aij->cend);
52878b31e54SBarry Smith     ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
52978b31e54SBarry Smith     ierr = MatView(aij->B,viewer); CHKERRQ(ierr);
530d13ab20cSBarry Smith     fflush(fd);
5317f813858SBarry Smith     MPIU_Seq_end(mat->comm,1);
532d13ab20cSBarry Smith   }
533416022c9SBarry Smith   else {
53417699dbbSLois Curfman McInnes     int size = aij->size, rank = aij->rank;
53517699dbbSLois Curfman McInnes     if (size == 1) {
53678b31e54SBarry Smith       ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
53795373324SBarry Smith     }
53895373324SBarry Smith     else {
53995373324SBarry Smith       /* assemble the entire matrix onto first processor. */
54095373324SBarry Smith       Mat         A;
541ec8511deSBarry Smith       Mat_SeqAIJ *Aloc;
5422eb8c8abSBarry Smith       int         M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct;
54395373324SBarry Smith       Scalar      *a;
5442ee70a88SLois Curfman McInnes 
54517699dbbSLois Curfman McInnes       if (!rank) {
546416022c9SBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,0,0,0,&A);CHKERRQ(ierr);
54795373324SBarry Smith       }
54895373324SBarry Smith       else {
549416022c9SBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,0,0,0,&A);CHKERRQ(ierr);
55095373324SBarry Smith       }
551464493b3SBarry Smith       PLogObjectParent(mat,A);
552416022c9SBarry Smith 
55395373324SBarry Smith 
55495373324SBarry Smith       /* copy over the A part */
555ec8511deSBarry Smith       Aloc = (Mat_SeqAIJ*) aij->A->data;
5562ee70a88SLois Curfman McInnes       m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
55795373324SBarry Smith       row = aij->rstart;
558dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;}
55995373324SBarry Smith       for ( i=0; i<m; i++ ) {
560416022c9SBarry Smith         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr);
56195373324SBarry Smith         row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
56295373324SBarry Smith       }
5632ee70a88SLois Curfman McInnes       aj = Aloc->j;
564dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;}
56595373324SBarry Smith 
56695373324SBarry Smith       /* copy over the B part */
567ec8511deSBarry Smith       Aloc = (Mat_SeqAIJ*) aij->B->data;
5682ee70a88SLois Curfman McInnes       m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
56995373324SBarry Smith       row = aij->rstart;
57078b31e54SBarry Smith       ct = cols = (int *) PETSCMALLOC( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols);
571dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];}
57295373324SBarry Smith       for ( i=0; i<m; i++ ) {
573416022c9SBarry Smith         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr);
57495373324SBarry Smith         row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
57595373324SBarry Smith       }
57678b31e54SBarry Smith       PETSCFREE(ct);
57778b31e54SBarry Smith       ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
57878b31e54SBarry Smith       ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
57917699dbbSLois Curfman McInnes       if (!rank) {
58078b31e54SBarry Smith         ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr);
58195373324SBarry Smith       }
58278b31e54SBarry Smith       ierr = MatDestroy(A); CHKERRQ(ierr);
58395373324SBarry Smith     }
58495373324SBarry Smith   }
5851eb62cbbSBarry Smith   return 0;
5861eb62cbbSBarry Smith }
5871eb62cbbSBarry Smith 
588416022c9SBarry Smith static int MatView_MPIAIJ(PetscObject obj,Viewer viewer)
589416022c9SBarry Smith {
590416022c9SBarry Smith   Mat         mat = (Mat) obj;
591416022c9SBarry Smith   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
592416022c9SBarry Smith   int         ierr;
593416022c9SBarry Smith   PetscObject vobj = (PetscObject) viewer;
594416022c9SBarry Smith 
59548d91487SBarry Smith   if (!aij->assembled) SETERRQ(1,"MatView_MPIAIJ:must assemble matrix");
596416022c9SBarry Smith   if (!viewer) {
597416022c9SBarry Smith     viewer = STDOUT_VIEWER_SELF; vobj = (PetscObject) viewer;
598416022c9SBarry Smith   }
599416022c9SBarry Smith   if (vobj->cookie == DRAW_COOKIE && vobj->type == NULLWINDOW) return 0;
600416022c9SBarry Smith   else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILE_VIEWER) {
601416022c9SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr);
602416022c9SBarry Smith   }
603416022c9SBarry Smith   else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILES_VIEWER) {
604416022c9SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr);
605416022c9SBarry Smith   }
606416022c9SBarry Smith   else if (vobj->cookie == DRAW_COOKIE) {
607416022c9SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr);
608416022c9SBarry Smith   }
609416022c9SBarry Smith   else if (vobj->type == BINARY_FILE_VIEWER) {
610416022c9SBarry Smith     return MatView_MPIAIJ_Binary(mat,viewer);
611416022c9SBarry Smith   }
612416022c9SBarry Smith   return 0;
613416022c9SBarry Smith }
614416022c9SBarry Smith 
615ec8511deSBarry Smith extern int MatMarkDiag_SeqAIJ(Mat);
6161eb62cbbSBarry Smith /*
6171eb62cbbSBarry Smith     This has to provide several versions.
6181eb62cbbSBarry Smith 
6191eb62cbbSBarry Smith      1) per sequential
6201eb62cbbSBarry Smith      2) a) use only local smoothing updating outer values only once.
6211eb62cbbSBarry Smith         b) local smoothing updating outer values each inner iteration
622d6dfbf8fSBarry Smith      3) color updating out values betwen colors.
6231eb62cbbSBarry Smith */
624fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag,
625dbb450caSBarry Smith                            double fshift,int its,Vec xx)
6268a729477SBarry Smith {
62744a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
628d6dfbf8fSBarry Smith   Mat        AA = mat->A, BB = mat->B;
629ec8511deSBarry Smith   Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data;
6306abc6512SBarry Smith   Scalar     zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts;
6316abc6512SBarry Smith   int        ierr,*idx, *diag;
632416022c9SBarry Smith   int        n = mat->n, m = mat->m, i,shift = A->indexshift;
633da3a660dSBarry Smith   Vec        tt;
6348a729477SBarry Smith 
63548d91487SBarry Smith   if (!mat->assembled) SETERRQ(1,"MatRelax_MPIAIJ:must assemble matrix");
6361eb62cbbSBarry Smith 
637d6dfbf8fSBarry Smith   VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls);
638dbb450caSBarry Smith   xs = x + shift; /* shift by one for index start of 1 */
639dbb450caSBarry Smith   ls = ls + shift;
640ec8511deSBarry Smith   if (!A->diag) {if ((ierr = MatMarkDiag_SeqAIJ(AA))) return ierr;}
641d6dfbf8fSBarry Smith   diag = A->diag;
642acb40c82SBarry Smith   if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) {
64348d91487SBarry Smith     SETERRQ(1,"MatRelax_MPIAIJ:Option not supported");
644acb40c82SBarry Smith   }
645da3a660dSBarry Smith   if (flag & SOR_EISENSTAT) {
646da3a660dSBarry Smith     /* Let  A = L + U + D; where L is lower trianglar,
647da3a660dSBarry Smith     U is upper triangular, E is diagonal; This routine applies
648da3a660dSBarry Smith 
649da3a660dSBarry Smith             (L + E)^{-1} A (U + E)^{-1}
650da3a660dSBarry Smith 
651da3a660dSBarry Smith     to a vector efficiently using Eisenstat's trick. This is for
652da3a660dSBarry Smith     the case of SSOR preconditioner, so E is D/omega where omega
653da3a660dSBarry Smith     is the relaxation factor.
654da3a660dSBarry Smith     */
65578b31e54SBarry Smith     ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr);
656464493b3SBarry Smith     PLogObjectParent(matin,tt);
657da3a660dSBarry Smith     VecGetArray(tt,&t);
658da3a660dSBarry Smith     scale = (2.0/omega) - 1.0;
659da3a660dSBarry Smith     /*  x = (E + U)^{-1} b */
660da3a660dSBarry Smith     VecSet(&zero,mat->lvec);
66164119d58SLois Curfman McInnes     ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
66278b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
663da3a660dSBarry Smith     for ( i=m-1; i>-1; i-- ) {
664da3a660dSBarry Smith       n    = A->i[i+1] - diag[i] - 1;
665dbb450caSBarry Smith       idx  = A->j + diag[i] + !shift;
666dbb450caSBarry Smith       v    = A->a + diag[i] + !shift;
667da3a660dSBarry Smith       sum  = b[i];
668da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,xs,v,idx,n);
669dbb450caSBarry Smith       d    = fshift + A->a[diag[i]+shift];
670da3a660dSBarry Smith       n    = B->i[i+1] - B->i[i];
671dbb450caSBarry Smith       idx  = B->j + B->i[i] + shift;
672dbb450caSBarry Smith       v    = B->a + B->i[i] + shift;
673da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ls,v,idx,n);
674da3a660dSBarry Smith       x[i] = omega*(sum/d);
675da3a660dSBarry Smith     }
67664119d58SLois Curfman McInnes     ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
67778b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
678da3a660dSBarry Smith 
679da3a660dSBarry Smith     /*  t = b - (2*E - D)x */
680da3a660dSBarry Smith     v = A->a;
681dbb450caSBarry Smith     for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ + shift])*x[i]; }
682da3a660dSBarry Smith 
683da3a660dSBarry Smith     /*  t = (E + L)^{-1}t */
684dbb450caSBarry Smith     ts = t + shift; /* shifted by one for index start of a or mat->j*/
685da3a660dSBarry Smith     diag = A->diag;
686da3a660dSBarry Smith     VecSet(&zero,mat->lvec);
68764119d58SLois Curfman McInnes     ierr = VecPipelineBegin(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
68878b31e54SBarry Smith                                                  mat->Mvctx); CHKERRQ(ierr);
689da3a660dSBarry Smith     for ( i=0; i<m; i++ ) {
690da3a660dSBarry Smith       n    = diag[i] - A->i[i];
691dbb450caSBarry Smith       idx  = A->j + A->i[i] + shift;
692dbb450caSBarry Smith       v    = A->a + A->i[i] + shift;
693da3a660dSBarry Smith       sum  = t[i];
694da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ts,v,idx,n);
695dbb450caSBarry Smith       d    = fshift + A->a[diag[i]+shift];
696da3a660dSBarry Smith       n    = B->i[i+1] - B->i[i];
697dbb450caSBarry Smith       idx  = B->j + B->i[i] + shift;
698dbb450caSBarry Smith       v    = B->a + B->i[i] + shift;
699da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ls,v,idx,n);
700da3a660dSBarry Smith       t[i] = omega*(sum/d);
701da3a660dSBarry Smith     }
70264119d58SLois Curfman McInnes     ierr = VecPipelineEnd(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
70378b31e54SBarry Smith                                                     mat->Mvctx); CHKERRQ(ierr);
704da3a660dSBarry Smith     /*  x = x + t */
705da3a660dSBarry Smith     for ( i=0; i<m; i++ ) { x[i] += t[i]; }
706da3a660dSBarry Smith     VecDestroy(tt);
707da3a660dSBarry Smith     return 0;
708da3a660dSBarry Smith   }
709da3a660dSBarry Smith 
7101eb62cbbSBarry Smith 
711d6dfbf8fSBarry Smith   if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){
712da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
713da3a660dSBarry Smith       VecSet(&zero,mat->lvec); VecSet(&zero,xx);
714da3a660dSBarry Smith     }
715da3a660dSBarry Smith     else {
71664119d58SLois Curfman McInnes       ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
71778b31e54SBarry Smith       CHKERRQ(ierr);
71864119d58SLois Curfman McInnes       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
71978b31e54SBarry Smith       CHKERRQ(ierr);
720da3a660dSBarry Smith     }
721d6dfbf8fSBarry Smith     while (its--) {
722d6dfbf8fSBarry Smith       /* go down through the rows */
72364119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
72478b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
725d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
726d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
727dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
728dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
729d6dfbf8fSBarry Smith         sum  = b[i];
730d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
731dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
732d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
733dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
734dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
735d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
736d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
737d6dfbf8fSBarry Smith       }
73864119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
73978b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
740d6dfbf8fSBarry Smith       /* come up through the rows */
74164119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
74278b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
743d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
744d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
745dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
746dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
747d6dfbf8fSBarry Smith         sum  = b[i];
748d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
749dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
750d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
751dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
752dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
753d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
754d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
755d6dfbf8fSBarry Smith       }
75664119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
75778b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
758d6dfbf8fSBarry Smith     }
759d6dfbf8fSBarry Smith   }
760d6dfbf8fSBarry Smith   else if (flag & SOR_FORWARD_SWEEP){
761da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
762da3a660dSBarry Smith       VecSet(&zero,mat->lvec);
76364119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
76478b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
765da3a660dSBarry Smith       for ( i=0; i<m; i++ ) {
766da3a660dSBarry Smith         n    = diag[i] - A->i[i];
767dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
768dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
769da3a660dSBarry Smith         sum  = b[i];
770da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
771dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
772da3a660dSBarry Smith         n    = B->i[i+1] - B->i[i];
773dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
774dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
775da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
776da3a660dSBarry Smith         x[i] = omega*(sum/d);
777da3a660dSBarry Smith       }
77864119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
77978b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
780da3a660dSBarry Smith       its--;
781da3a660dSBarry Smith     }
782d6dfbf8fSBarry Smith     while (its--) {
78364119d58SLois Curfman McInnes       ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
78478b31e54SBarry Smith       CHKERRQ(ierr);
78564119d58SLois Curfman McInnes       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
78678b31e54SBarry Smith       CHKERRQ(ierr);
78764119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
78878b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
789d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
790d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
791dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
792dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
793d6dfbf8fSBarry Smith         sum  = b[i];
794d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
795dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
796d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
797dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
798dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
799d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
800d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
801d6dfbf8fSBarry Smith       }
80264119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
80378b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
804d6dfbf8fSBarry Smith     }
805d6dfbf8fSBarry Smith   }
806d6dfbf8fSBarry Smith   else if (flag & SOR_BACKWARD_SWEEP){
807da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
808da3a660dSBarry Smith       VecSet(&zero,mat->lvec);
80964119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
81078b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
811da3a660dSBarry Smith       for ( i=m-1; i>-1; i-- ) {
812da3a660dSBarry Smith         n    = A->i[i+1] - diag[i] - 1;
813dbb450caSBarry Smith         idx  = A->j + diag[i] + !shift;
814dbb450caSBarry Smith         v    = A->a + diag[i] + !shift;
815da3a660dSBarry Smith         sum  = b[i];
816da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
817dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
818da3a660dSBarry Smith         n    = B->i[i+1] - B->i[i];
819dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
820dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
821da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
822da3a660dSBarry Smith         x[i] = omega*(sum/d);
823da3a660dSBarry Smith       }
82464119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
82578b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
826da3a660dSBarry Smith       its--;
827da3a660dSBarry Smith     }
828d6dfbf8fSBarry Smith     while (its--) {
82964119d58SLois Curfman McInnes       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN,
83078b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
83164119d58SLois Curfman McInnes       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN,
83278b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
83364119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
83478b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
835d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
836d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
837dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
838dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
839d6dfbf8fSBarry Smith         sum  = b[i];
840d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
841dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
842d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
843dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
844dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
845d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
846d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
847d6dfbf8fSBarry Smith       }
84864119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
84978b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
850d6dfbf8fSBarry Smith     }
851d6dfbf8fSBarry Smith   }
852d6dfbf8fSBarry Smith   else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
853da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
854dbb450caSBarry Smith       return MatRelax(mat->A,bb,omega,flag,fshift,its,xx);
855da3a660dSBarry Smith     }
85664119d58SLois Curfman McInnes     ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
85778b31e54SBarry Smith     CHKERRQ(ierr);
85864119d58SLois Curfman McInnes     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
85978b31e54SBarry Smith     CHKERRQ(ierr);
860d6dfbf8fSBarry Smith     while (its--) {
861d6dfbf8fSBarry Smith       /* go down through the rows */
862d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
863d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
864dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
865dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
866d6dfbf8fSBarry Smith         sum  = b[i];
867d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
868dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
869d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
870dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
871dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
872d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
873d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
874d6dfbf8fSBarry Smith       }
875d6dfbf8fSBarry Smith       /* come up through the rows */
876d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
877d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
878dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
879dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
880d6dfbf8fSBarry Smith         sum  = b[i];
881d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
882dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
883d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
884dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
885dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
886d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
887d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
888d6dfbf8fSBarry Smith       }
889d6dfbf8fSBarry Smith     }
890d6dfbf8fSBarry Smith   }
891d6dfbf8fSBarry Smith   else if (flag & SOR_LOCAL_FORWARD_SWEEP){
892da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
893dbb450caSBarry Smith       return MatRelax(mat->A,bb,omega,flag,fshift,its,xx);
894da3a660dSBarry Smith     }
89564119d58SLois Curfman McInnes     ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
89678b31e54SBarry Smith     CHKERRQ(ierr);
89764119d58SLois Curfman McInnes     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
89878b31e54SBarry Smith     CHKERRQ(ierr);
899d6dfbf8fSBarry Smith     while (its--) {
900d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
901d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
902dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
903dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
904d6dfbf8fSBarry Smith         sum  = b[i];
905d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
906dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
907d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
908dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
909dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
910d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
911d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
912d6dfbf8fSBarry Smith       }
913d6dfbf8fSBarry Smith     }
914d6dfbf8fSBarry Smith   }
915d6dfbf8fSBarry Smith   else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
916da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
917dbb450caSBarry Smith       return MatRelax(mat->A,bb,omega,flag,fshift,its,xx);
918da3a660dSBarry Smith     }
91964119d58SLois Curfman McInnes     ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,
92078b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
92164119d58SLois Curfman McInnes     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,
92278b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
923d6dfbf8fSBarry Smith     while (its--) {
924d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
925d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
926dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
927dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
928d6dfbf8fSBarry Smith         sum  = b[i];
929d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
930dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
931d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
932dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
933dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
934d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
935d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
936d6dfbf8fSBarry Smith       }
937d6dfbf8fSBarry Smith     }
938d6dfbf8fSBarry Smith   }
9398a729477SBarry Smith   return 0;
9408a729477SBarry Smith }
941a66be287SLois Curfman McInnes 
942fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz,
943fc76ce87SLois Curfman McInnes                              int *nzalloc,int *mem)
944a66be287SLois Curfman McInnes {
945a66be287SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
946a66be287SLois Curfman McInnes   Mat        A = mat->A, B = mat->B;
947a66be287SLois Curfman McInnes   int        ierr, isend[3], irecv[3], nzA, nzallocA, memA;
948a66be287SLois Curfman McInnes 
94978b31e54SBarry Smith   ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr);
95078b31e54SBarry Smith   ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr);
951a66be287SLois Curfman McInnes   isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA;
952a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
953a66be287SLois Curfman McInnes     *nz = isend[0]; *nzalloc = isend[1]; *mem = isend[2];
954a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
955d65a2f8fSBarry Smith     MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_MAX,matin->comm);
956a66be287SLois Curfman McInnes     *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2];
957a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
958d65a2f8fSBarry Smith     MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_SUM,matin->comm);
959a66be287SLois Curfman McInnes     *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2];
960a66be287SLois Curfman McInnes   }
961a66be287SLois Curfman McInnes   return 0;
962a66be287SLois Curfman McInnes }
963a66be287SLois Curfman McInnes 
964299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*);
965299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*);
966299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double);
967299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *);
968299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec);
969299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec);
970299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec);
971299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec);
972299609e3SLois Curfman McInnes 
973416022c9SBarry Smith static int MatSetOption_MPIAIJ(Mat A,MatOption op)
974c74985f6SBarry Smith {
975c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
976c74985f6SBarry Smith 
977c0bbcb79SLois Curfman McInnes   if (op == NO_NEW_NONZERO_LOCATIONS ||
978c0bbcb79SLois Curfman McInnes       op == YES_NEW_NONZERO_LOCATIONS ||
979c0bbcb79SLois Curfman McInnes       op == COLUMNS_SORTED ||
980c0bbcb79SLois Curfman McInnes       op == ROW_ORIENTED) {
981c0bbcb79SLois Curfman McInnes         MatSetOption(a->A,op);
982c0bbcb79SLois Curfman McInnes         MatSetOption(a->B,op);
983c74985f6SBarry Smith   }
984c0bbcb79SLois Curfman McInnes   else if (op == ROWS_SORTED ||
985c0bbcb79SLois Curfman McInnes            op == SYMMETRIC_MATRIX ||
986c0bbcb79SLois Curfman McInnes            op == STRUCTURALLY_SYMMETRIC_MATRIX ||
987c0bbcb79SLois Curfman McInnes            op == YES_NEW_DIAGONALS)
988c0bbcb79SLois Curfman McInnes     PLogInfo((PetscObject)A,"Info:MatSetOption_MPIAIJ:Option ignored\n");
989bbb6d6a8SBarry Smith   else if (op == COLUMN_ORIENTED)
9904d39ef84SLois Curfman McInnes     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:COLUMN_ORIENTED");}
991c0bbcb79SLois Curfman McInnes   else if (op == NO_NEW_DIAGONALS)
9924d39ef84SLois Curfman McInnes     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:NO_NEW_DIAGONALS");}
993c0bbcb79SLois Curfman McInnes   else
9944d39ef84SLois Curfman McInnes     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:unknown option");}
995c74985f6SBarry Smith   return 0;
996c74985f6SBarry Smith }
997c74985f6SBarry Smith 
998d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n)
999c74985f6SBarry Smith {
100044a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1001c74985f6SBarry Smith   *m = mat->M; *n = mat->N;
1002c74985f6SBarry Smith   return 0;
1003c74985f6SBarry Smith }
1004c74985f6SBarry Smith 
1005d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n)
1006c74985f6SBarry Smith {
100744a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1008b7c46309SBarry Smith   *m = mat->m; *n = mat->N;
1009c74985f6SBarry Smith   return 0;
1010c74985f6SBarry Smith }
1011c74985f6SBarry Smith 
1012d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n)
1013c74985f6SBarry Smith {
101444a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1015c74985f6SBarry Smith   *m = mat->rstart; *n = mat->rend;
1016c74985f6SBarry Smith   return 0;
1017c74985f6SBarry Smith }
1018c74985f6SBarry Smith 
101939e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v)
102039e00950SLois Curfman McInnes {
1021154123eaSLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1022154123eaSLois Curfman McInnes   Scalar     *vworkA, *vworkB, **pvA, **pvB;
1023154123eaSLois Curfman McInnes   int        i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart;
1024154123eaSLois Curfman McInnes   int        nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend;
102539e00950SLois Curfman McInnes 
1026416022c9SBarry Smith   if (row < rstart || row >= rend) SETERRQ(1,"MatGetRow_MPIAIJ:only local rows")
1027abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
102839e00950SLois Curfman McInnes 
1029154123eaSLois Curfman McInnes   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1030154123eaSLois Curfman McInnes   if (!v)   {pvA = 0; pvB = 0;}
1031154123eaSLois Curfman McInnes   if (!idx) {pcA = 0; if (!v) pcB = 0;}
103278b31e54SBarry Smith   ierr = MatGetRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
103378b31e54SBarry Smith   ierr = MatGetRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
1034154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1035154123eaSLois Curfman McInnes 
1036154123eaSLois Curfman McInnes   if (v  || idx) {
1037154123eaSLois Curfman McInnes     if (nztot) {
1038154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1039299609e3SLois Curfman McInnes       int imark;
104048b35521SBarry Smith       if (mat->assembled) {
1041154123eaSLois Curfman McInnes         for (i=0; i<nzB; i++) cworkB[i] = mat->garray[cworkB[i]];
104248b35521SBarry Smith       }
1043154123eaSLois Curfman McInnes       if (v) {
104478b31e54SBarry Smith         *v = (Scalar *) PETSCMALLOC( (nztot)*sizeof(Scalar) ); CHKPTRQ(*v);
104539e00950SLois Curfman McInnes         for ( i=0; i<nzB; i++ ) {
1046154123eaSLois Curfman McInnes           if (cworkB[i] < cstart)   (*v)[i] = vworkB[i];
1047154123eaSLois Curfman McInnes           else break;
1048154123eaSLois Curfman McInnes         }
1049154123eaSLois Curfman McInnes         imark = i;
1050154123eaSLois Curfman McInnes         for ( i=0; i<nzA; i++ )     (*v)[imark+i] = vworkA[i];
1051299609e3SLois Curfman McInnes         for ( i=imark; i<nzB; i++ ) (*v)[nzA+i] = vworkB[i];
1052154123eaSLois Curfman McInnes       }
1053154123eaSLois Curfman McInnes       if (idx) {
105478b31e54SBarry Smith         *idx = (int *) PETSCMALLOC( (nztot)*sizeof(int) ); CHKPTRQ(*idx);
1055154123eaSLois Curfman McInnes         for (i=0; i<nzA; i++) cworkA[i] += cstart;
1056154123eaSLois Curfman McInnes         for ( i=0; i<nzB; i++ ) {
1057154123eaSLois Curfman McInnes           if (cworkB[i] < cstart)   (*idx)[i] = cworkB[i];
1058154123eaSLois Curfman McInnes           else break;
1059154123eaSLois Curfman McInnes         }
1060154123eaSLois Curfman McInnes         imark = i;
1061154123eaSLois Curfman McInnes         for ( i=0; i<nzA; i++ )     (*idx)[imark+i] = cworkA[i];
1062299609e3SLois Curfman McInnes         for ( i=imark; i<nzB; i++ ) (*idx)[nzA+i] = cworkB[i];
106339e00950SLois Curfman McInnes       }
106439e00950SLois Curfman McInnes     }
106539e00950SLois Curfman McInnes     else {*idx = 0; *v=0;}
1066154123eaSLois Curfman McInnes   }
106739e00950SLois Curfman McInnes   *nz = nztot;
106878b31e54SBarry Smith   ierr = MatRestoreRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
106978b31e54SBarry Smith   ierr = MatRestoreRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
107039e00950SLois Curfman McInnes   return 0;
107139e00950SLois Curfman McInnes }
107239e00950SLois Curfman McInnes 
107339e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v)
107439e00950SLois Curfman McInnes {
107578b31e54SBarry Smith   if (idx) PETSCFREE(*idx);
107678b31e54SBarry Smith   if (v) PETSCFREE(*v);
107739e00950SLois Curfman McInnes   return 0;
107839e00950SLois Curfman McInnes }
107939e00950SLois Curfman McInnes 
1080855ac2c5SLois Curfman McInnes static int MatNorm_MPIAIJ(Mat mat,MatNormType type,double *norm)
1081855ac2c5SLois Curfman McInnes {
1082855ac2c5SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
1083ec8511deSBarry Smith   Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data;
1084416022c9SBarry Smith   int        ierr, i, j, cstart = aij->cstart,shift = amat->indexshift;
1085416022c9SBarry Smith   double     sum = 0.0;
108604ca555eSLois Curfman McInnes   Scalar     *v;
108704ca555eSLois Curfman McInnes 
1088416022c9SBarry Smith   if (!aij->assembled) SETERRQ(1,"MatNorm_MPIAIJ:Must assemble matrix");
108917699dbbSLois Curfman McInnes   if (aij->size == 1) {
109014183eadSLois Curfman McInnes     ierr =  MatNorm(aij->A,type,norm); CHKERRQ(ierr);
109137fa93a5SLois Curfman McInnes   } else {
109204ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
109304ca555eSLois Curfman McInnes       v = amat->a;
109404ca555eSLois Curfman McInnes       for (i=0; i<amat->nz; i++ ) {
109504ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
109604ca555eSLois Curfman McInnes         sum += real(conj(*v)*(*v)); v++;
109704ca555eSLois Curfman McInnes #else
109804ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
109904ca555eSLois Curfman McInnes #endif
110004ca555eSLois Curfman McInnes       }
110104ca555eSLois Curfman McInnes       v = bmat->a;
110204ca555eSLois Curfman McInnes       for (i=0; i<bmat->nz; i++ ) {
110304ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
110404ca555eSLois Curfman McInnes         sum += real(conj(*v)*(*v)); v++;
110504ca555eSLois Curfman McInnes #else
110604ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
110704ca555eSLois Curfman McInnes #endif
110804ca555eSLois Curfman McInnes       }
110904ca555eSLois Curfman McInnes       MPI_Allreduce((void*)&sum,(void*)norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);
111004ca555eSLois Curfman McInnes       *norm = sqrt(*norm);
111104ca555eSLois Curfman McInnes     }
111204ca555eSLois Curfman McInnes     else if (type == NORM_1) { /* max column norm */
111304ca555eSLois Curfman McInnes       double *tmp, *tmp2;
111404ca555eSLois Curfman McInnes       int    *jj, *garray = aij->garray;
111504ca555eSLois Curfman McInnes       tmp  = (double *) PETSCMALLOC( aij->N*sizeof(double) ); CHKPTRQ(tmp);
111604ca555eSLois Curfman McInnes       tmp2 = (double *) PETSCMALLOC( aij->N*sizeof(double) ); CHKPTRQ(tmp2);
1117416022c9SBarry Smith       PetscZero(tmp,aij->N*sizeof(double));
111804ca555eSLois Curfman McInnes       *norm = 0.0;
111904ca555eSLois Curfman McInnes       v = amat->a; jj = amat->j;
112004ca555eSLois Curfman McInnes       for ( j=0; j<amat->nz; j++ ) {
112104ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
1122dbb450caSBarry Smith         tmp[cstart + *jj++ + shift] += abs(*v++);
112304ca555eSLois Curfman McInnes #else
1124dbb450caSBarry Smith         tmp[cstart + *jj++ + shift] += fabs(*v++);
112504ca555eSLois Curfman McInnes #endif
112604ca555eSLois Curfman McInnes       }
112704ca555eSLois Curfman McInnes       v = bmat->a; jj = bmat->j;
112804ca555eSLois Curfman McInnes       for ( j=0; j<bmat->nz; j++ ) {
112904ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
1130dbb450caSBarry Smith         tmp[garray[*jj++ + shift]] += abs(*v++);
113104ca555eSLois Curfman McInnes #else
1132dbb450caSBarry Smith         tmp[garray[*jj++ + shift]] += fabs(*v++);
113304ca555eSLois Curfman McInnes #endif
113404ca555eSLois Curfman McInnes       }
113504ca555eSLois Curfman McInnes       MPI_Allreduce((void*)tmp,(void*)tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm);
113604ca555eSLois Curfman McInnes       for ( j=0; j<aij->N; j++ ) {
113704ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
113804ca555eSLois Curfman McInnes       }
113904ca555eSLois Curfman McInnes       PETSCFREE(tmp); PETSCFREE(tmp2);
114004ca555eSLois Curfman McInnes     }
114104ca555eSLois Curfman McInnes     else if (type == NORM_INFINITY) { /* max row norm */
114204ca555eSLois Curfman McInnes       double normtemp = 0.0;
114304ca555eSLois Curfman McInnes       for ( j=0; j<amat->m; j++ ) {
1144dbb450caSBarry Smith         v = amat->a + amat->i[j] + shift;
114504ca555eSLois Curfman McInnes         sum = 0.0;
114604ca555eSLois Curfman McInnes         for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) {
114704ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
114804ca555eSLois Curfman McInnes           sum += abs(*v); v++;
114904ca555eSLois Curfman McInnes #else
115004ca555eSLois Curfman McInnes           sum += fabs(*v); v++;
115104ca555eSLois Curfman McInnes #endif
115204ca555eSLois Curfman McInnes         }
1153dbb450caSBarry Smith         v = bmat->a + bmat->i[j] + shift;
115404ca555eSLois Curfman McInnes         for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) {
115504ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
115604ca555eSLois Curfman McInnes           sum += abs(*v); v++;
115704ca555eSLois Curfman McInnes #else
115804ca555eSLois Curfman McInnes           sum += fabs(*v); v++;
115904ca555eSLois Curfman McInnes #endif
116004ca555eSLois Curfman McInnes         }
116104ca555eSLois Curfman McInnes         if (sum > normtemp) normtemp = sum;
116204ca555eSLois Curfman McInnes         MPI_Allreduce((void*)&normtemp,(void*)norm,1,MPI_DOUBLE,MPI_MAX,mat->comm);
116304ca555eSLois Curfman McInnes       }
116404ca555eSLois Curfman McInnes     }
116504ca555eSLois Curfman McInnes     else {
116648d91487SBarry Smith       SETERRQ(1,"MatNorm_MPIRow:No support for two norm");
116704ca555eSLois Curfman McInnes     }
116837fa93a5SLois Curfman McInnes   }
1169855ac2c5SLois Curfman McInnes   return 0;
1170855ac2c5SLois Curfman McInnes }
1171855ac2c5SLois Curfman McInnes 
11720de55854SLois Curfman McInnes static int MatTranspose_MPIAIJ(Mat A,Mat *matout)
1173b7c46309SBarry Smith {
1174b7c46309SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
1175dbb450caSBarry Smith   Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data;
1176416022c9SBarry Smith   int        ierr,shift = Aloc->indexshift;
1177416022c9SBarry Smith   Mat        B;
1178b7c46309SBarry Smith   int        M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct;
1179b7c46309SBarry Smith   Scalar     *array;
1180b7c46309SBarry Smith 
1181416022c9SBarry Smith   if (!matout && M != N) SETERRQ(1,"MatTranspose_MPIAIJ:Square only in-place");
1182b7c46309SBarry Smith   ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,0,0,0,&B);
1183b7c46309SBarry Smith   CHKERRQ(ierr);
1184b7c46309SBarry Smith 
1185b7c46309SBarry Smith   /* copy over the A part */
1186ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*) a->A->data;
1187b7c46309SBarry Smith   m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1188b7c46309SBarry Smith   row = a->rstart;
1189dbb450caSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;}
1190b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1191416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1192b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
1193b7c46309SBarry Smith   }
1194b7c46309SBarry Smith   aj = Aloc->j;
1195dbb450caSBarry Smith   for ( i=0; i<ai[m]|+shift; i++ ) {aj[i] -= a->cstart + shift;}
1196b7c46309SBarry Smith 
1197b7c46309SBarry Smith   /* copy over the B part */
1198ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*) a->B->data;
1199b7c46309SBarry Smith   m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1200b7c46309SBarry Smith   row = a->rstart;
12011987afe7SBarry Smith   ct = cols = (int *) PETSCMALLOC( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols);
1202dbb450caSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];}
1203b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1204416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1205b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
1206b7c46309SBarry Smith   }
1207b7c46309SBarry Smith   PETSCFREE(ct);
1208b7c46309SBarry Smith   ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr);
1209b7c46309SBarry Smith   ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr);
12100de55854SLois Curfman McInnes   if (matout) {
12110de55854SLois Curfman McInnes     *matout = B;
12120de55854SLois Curfman McInnes   } else {
12130de55854SLois Curfman McInnes     /* This isn't really an in-place transpose .... but free data structures from a */
12140de55854SLois Curfman McInnes     PETSCFREE(a->rowners);
12150de55854SLois Curfman McInnes     ierr = MatDestroy(a->A); CHKERRQ(ierr);
12160de55854SLois Curfman McInnes     ierr = MatDestroy(a->B); CHKERRQ(ierr);
12170de55854SLois Curfman McInnes     if (a->colmap) PETSCFREE(a->colmap);
12180de55854SLois Curfman McInnes     if (a->garray) PETSCFREE(a->garray);
12190de55854SLois Curfman McInnes     if (a->lvec) VecDestroy(a->lvec);
12200de55854SLois Curfman McInnes     if (a->Mvctx) VecScatterCtxDestroy(a->Mvctx);
12210de55854SLois Curfman McInnes     PETSCFREE(a);
1222416022c9SBarry Smith     PetscMemcpy(A,B,sizeof(struct _Mat));
12230de55854SLois Curfman McInnes     PETSCHEADERDESTROY(B);
12240de55854SLois Curfman McInnes   }
1225b7c46309SBarry Smith   return 0;
1226b7c46309SBarry Smith }
1227b7c46309SBarry Smith 
1228fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *);
1229ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat,Mat *);
1230d6dfbf8fSBarry Smith 
12318a729477SBarry Smith /* -------------------------------------------------------------------*/
12322ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ,
123339e00950SLois Curfman McInnes        MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ,
123444a69424SLois Curfman McInnes        MatMult_MPIAIJ,MatMultAdd_MPIAIJ,
123544a69424SLois Curfman McInnes        MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ,
1236299609e3SLois Curfman McInnes        MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ,
1237299609e3SLois Curfman McInnes        MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ,
1238299609e3SLois Curfman McInnes        MatLUFactor_MPIAIJ,0,
123944a69424SLois Curfman McInnes        MatRelax_MPIAIJ,
1240b7c46309SBarry Smith        MatTranspose_MPIAIJ,
1241a66be287SLois Curfman McInnes        MatGetInfo_MPIAIJ,0,
1242855ac2c5SLois Curfman McInnes        MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ,
1243ee50ffe9SBarry Smith        MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ,
12441eb62cbbSBarry Smith        0,
1245299609e3SLois Curfman McInnes        MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ,
1246299609e3SLois Curfman McInnes        MatGetReordering_MPIAIJ,
1247299609e3SLois Curfman McInnes        MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0,
1248d1710a03SLois Curfman McInnes        MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ,
1249299609e3SLois Curfman McInnes        MatILUFactorSymbolic_MPIAIJ,0,
1250ff7509f2SBarry Smith        0,0,MatConvert_MPIAIJ,0,0,MatCopyPrivate_MPIAIJ};
12518a729477SBarry Smith 
12521987afe7SBarry Smith /*@C
1253ff756334SLois Curfman McInnes    MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format
1254ff756334SLois Curfman McInnes    (the default parallel PETSc format).
12558a729477SBarry Smith 
12568a729477SBarry Smith    Input Parameters:
12571eb62cbbSBarry Smith .  comm - MPI communicator
12587d3e4905SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
12597d3e4905SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated
12607d3e4905SLois Curfman McInnes            if N is given)
12617d3e4905SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
12627d3e4905SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated
12637d3e4905SLois Curfman McInnes            if n is given)
1264ab693e5aSLois Curfman McInnes .  d_nz - number of nonzeros per row in diagonal portion of local submatrix
1265ff756334SLois Curfman McInnes            (same for all local rows)
1266ab693e5aSLois Curfman McInnes .  d_nzz - number of nonzeros per row in diagonal portion of local submatrix
1267ab693e5aSLois Curfman McInnes            or null (possibly different for each row).  You must leave room
1268ab693e5aSLois Curfman McInnes            for the diagonal entry even if it is zero.
1269ab693e5aSLois Curfman McInnes .  o_nz - number of nonzeros per row in off-diagonal portion of local
1270ab693e5aSLois Curfman McInnes            submatrix (same for all local rows).
1271ab693e5aSLois Curfman McInnes .  o_nzz - number of nonzeros per row in off-diagonal portion of local
1272ab693e5aSLois Curfman McInnes            submatrix or null (possibly different for each row).
12738a729477SBarry Smith 
1274ff756334SLois Curfman McInnes    Output Parameter:
12758a729477SBarry Smith .  newmat - the matrix
12768a729477SBarry Smith 
1277ff756334SLois Curfman McInnes    Notes:
1278ff756334SLois Curfman McInnes    The AIJ format (also called the Yale sparse matrix format or
1279ff756334SLois Curfman McInnes    compressed row storage), is fully compatible with standard Fortran 77
1280*0002213bSLois Curfman McInnes    storage.  That is, the stored row and column indices can begin at
1281*0002213bSLois Curfman McInnes    either one (as in Fortran) or zero.  See the users manual for details.
1282ff756334SLois Curfman McInnes 
1283ff756334SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
1284ff756334SLois Curfman McInnes    (possibly both).
1285ff756334SLois Curfman McInnes 
1286e0245417SLois Curfman McInnes    Storage Information:
1287e0245417SLois Curfman McInnes    For a square global matrix we define each processor's diagonal portion
1288e0245417SLois Curfman McInnes    to be its local rows and the corresponding columns (a square submatrix);
1289e0245417SLois Curfman McInnes    each processor's off-diagonal portion encompasses the remainder of the
1290e0245417SLois Curfman McInnes    local matrix (a rectangular submatrix).
1291e0245417SLois Curfman McInnes 
1292e0245417SLois Curfman McInnes    The user can specify preallocated storage for the diagonal part of
1293e0245417SLois Curfman McInnes    the local submatrix with either d_nz or d_nnz (not both). Set both
1294e0245417SLois Curfman McInnes    d_nz and d_nnz to zero for PETSc to control dynamic memory allocation.
1295e0245417SLois Curfman McInnes    Likewise, specify preallocated storage for the off-diagonal part of
1296e0245417SLois Curfman McInnes    the local submatrix with o_nz or o_nnz (not both).
1297ff756334SLois Curfman McInnes 
1298dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel
1299ff756334SLois Curfman McInnes 
1300fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
13018a729477SBarry Smith @*/
13021eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N,
13031eb62cbbSBarry Smith                     int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat)
13048a729477SBarry Smith {
13058a729477SBarry Smith   Mat          mat;
1306416022c9SBarry Smith   Mat_MPIAIJ   *a;
13076abc6512SBarry Smith   int          ierr, i,sum[2],work[2];
1308416022c9SBarry Smith 
13098a729477SBarry Smith   *newmat         = 0;
131044a69424SLois Curfman McInnes   PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm);
1311a5a9c739SBarry Smith   PLogObjectCreate(mat);
1312416022c9SBarry Smith   mat->data       = (void *) (a = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(a);
1313416022c9SBarry Smith   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
131444a69424SLois Curfman McInnes   mat->destroy    = MatDestroy_MPIAIJ;
131544a69424SLois Curfman McInnes   mat->view       = MatView_MPIAIJ;
13168a729477SBarry Smith   mat->factor     = 0;
1317d6dfbf8fSBarry Smith 
131864119d58SLois Curfman McInnes   a->insertmode = NOT_SET_VALUES;
131917699dbbSLois Curfman McInnes   MPI_Comm_rank(comm,&a->rank);
132017699dbbSLois Curfman McInnes   MPI_Comm_size(comm,&a->size);
13211eb62cbbSBarry Smith 
13221987afe7SBarry Smith   if (m == PETSC_DECIDE && (d_nnz || o_nnz))
13231987afe7SBarry Smith     SETERRQ(1,"MatCreateMPIAIJ:Cannot have PETSc decide rows but set d_nnz or o_nnz");
13241987afe7SBarry Smith 
1325dbd7a890SLois Curfman McInnes   if (M == PETSC_DECIDE || N == PETSC_DECIDE) {
13261eb62cbbSBarry Smith     work[0] = m; work[1] = n;
1327d65a2f8fSBarry Smith     MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );
1328dbd7a890SLois Curfman McInnes     if (M == PETSC_DECIDE) M = sum[0];
1329dbd7a890SLois Curfman McInnes     if (N == PETSC_DECIDE) N = sum[1];
13301eb62cbbSBarry Smith   }
133117699dbbSLois Curfman McInnes   if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);}
133217699dbbSLois Curfman McInnes   if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);}
1333416022c9SBarry Smith   a->m = m;
1334416022c9SBarry Smith   a->n = n;
1335416022c9SBarry Smith   a->N = N;
1336416022c9SBarry Smith   a->M = M;
13371eb62cbbSBarry Smith 
13381eb62cbbSBarry Smith   /* build local table of row and column ownerships */
133917699dbbSLois Curfman McInnes   a->rowners = (int *) PETSCMALLOC(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners);
134017699dbbSLois Curfman McInnes   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+
1341464493b3SBarry Smith                        sizeof(Mat_MPIAIJ));
134217699dbbSLois Curfman McInnes   a->cowners = a->rowners + a->size + 1;
1343416022c9SBarry Smith   MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm);
1344416022c9SBarry Smith   a->rowners[0] = 0;
134517699dbbSLois Curfman McInnes   for ( i=2; i<=a->size; i++ ) {
1346416022c9SBarry Smith     a->rowners[i] += a->rowners[i-1];
13478a729477SBarry Smith   }
134817699dbbSLois Curfman McInnes   a->rstart = a->rowners[a->rank];
134917699dbbSLois Curfman McInnes   a->rend   = a->rowners[a->rank+1];
1350416022c9SBarry Smith   MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm);
1351416022c9SBarry Smith   a->cowners[0] = 0;
135217699dbbSLois Curfman McInnes   for ( i=2; i<=a->size; i++ ) {
1353416022c9SBarry Smith     a->cowners[i] += a->cowners[i-1];
13548a729477SBarry Smith   }
135517699dbbSLois Curfman McInnes   a->cstart = a->cowners[a->rank];
135617699dbbSLois Curfman McInnes   a->cend   = a->cowners[a->rank+1];
13578a729477SBarry Smith 
1358416022c9SBarry Smith   ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&a->A); CHKERRQ(ierr);
1359416022c9SBarry Smith   PLogObjectParent(mat,a->A);
1360416022c9SBarry Smith   ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&a->B); CHKERRQ(ierr);
1361416022c9SBarry Smith   PLogObjectParent(mat,a->B);
13628a729477SBarry Smith 
13631eb62cbbSBarry Smith   /* build cache for off array entries formed */
1364416022c9SBarry Smith   ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr);
1365416022c9SBarry Smith   a->colmap    = 0;
1366416022c9SBarry Smith   a->garray    = 0;
13678a729477SBarry Smith 
13681eb62cbbSBarry Smith   /* stuff used for matrix vector multiply */
1369416022c9SBarry Smith   a->lvec      = 0;
1370416022c9SBarry Smith   a->Mvctx     = 0;
1371416022c9SBarry Smith   a->assembled = 0;
13728a729477SBarry Smith 
1373d6dfbf8fSBarry Smith   *newmat = mat;
1374d6dfbf8fSBarry Smith   return 0;
1375d6dfbf8fSBarry Smith }
1376c74985f6SBarry Smith 
1377ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat matin,Mat *newmat)
1378d6dfbf8fSBarry Smith {
1379d6dfbf8fSBarry Smith   Mat        mat;
1380416022c9SBarry Smith   Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data;
13812ee70a88SLois Curfman McInnes   int        ierr, len;
1382d6dfbf8fSBarry Smith 
1383416022c9SBarry Smith   if (!oldmat->assembled) SETERRQ(1,"MatCopyPrivate_MPIAIJ:Must assemble matrix");
1384416022c9SBarry Smith   *newmat       = 0;
138544a69424SLois Curfman McInnes   PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm);
1386a5a9c739SBarry Smith   PLogObjectCreate(mat);
1387416022c9SBarry Smith   mat->data     = (void *) (a = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(a);
1388416022c9SBarry Smith   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
138944a69424SLois Curfman McInnes   mat->destroy  = MatDestroy_MPIAIJ;
139044a69424SLois Curfman McInnes   mat->view     = MatView_MPIAIJ;
1391d6dfbf8fSBarry Smith   mat->factor   = matin->factor;
1392d6dfbf8fSBarry Smith 
1393416022c9SBarry Smith   a->m          = oldmat->m;
1394416022c9SBarry Smith   a->n          = oldmat->n;
1395416022c9SBarry Smith   a->M          = oldmat->M;
1396416022c9SBarry Smith   a->N          = oldmat->N;
1397d6dfbf8fSBarry Smith 
1398416022c9SBarry Smith   a->assembled  = 1;
1399416022c9SBarry Smith   a->rstart     = oldmat->rstart;
1400416022c9SBarry Smith   a->rend       = oldmat->rend;
1401416022c9SBarry Smith   a->cstart     = oldmat->cstart;
1402416022c9SBarry Smith   a->cend       = oldmat->cend;
140317699dbbSLois Curfman McInnes   a->size       = oldmat->size;
140417699dbbSLois Curfman McInnes   a->rank       = oldmat->rank;
140564119d58SLois Curfman McInnes   a->insertmode = NOT_SET_VALUES;
1406d6dfbf8fSBarry Smith 
140717699dbbSLois Curfman McInnes   a->rowners = (int *) PETSCMALLOC((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners);
140817699dbbSLois Curfman McInnes   PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ));
140917699dbbSLois Curfman McInnes   PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int));
1410416022c9SBarry Smith   ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr);
14112ee70a88SLois Curfman McInnes   if (oldmat->colmap) {
1412416022c9SBarry Smith     a->colmap = (int *) PETSCMALLOC((a->N)*sizeof(int));CHKPTRQ(a->colmap);
1413416022c9SBarry Smith     PLogObjectMemory(mat,(a->N)*sizeof(int));
1414416022c9SBarry Smith     PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int));
1415416022c9SBarry Smith   } else a->colmap = 0;
1416ec8511deSBarry Smith   if (oldmat->garray && (len = ((Mat_SeqAIJ *) (oldmat->B->data))->n)) {
1417416022c9SBarry Smith     a->garray = (int *) PETSCMALLOC(len*sizeof(int)); CHKPTRQ(a->garray);
1418464493b3SBarry Smith     PLogObjectMemory(mat,len*sizeof(int));
1419416022c9SBarry Smith     PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));
1420416022c9SBarry Smith   } else a->garray = 0;
1421d6dfbf8fSBarry Smith 
1422416022c9SBarry Smith   ierr =  VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr);
1423416022c9SBarry Smith   PLogObjectParent(mat,a->lvec);
1424416022c9SBarry Smith   ierr =  VecScatterCtxCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr);
1425416022c9SBarry Smith   PLogObjectParent(mat,a->Mvctx);
1426416022c9SBarry Smith   ierr =  MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr);
1427416022c9SBarry Smith   PLogObjectParent(mat,a->A);
1428416022c9SBarry Smith   ierr =  MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr);
1429416022c9SBarry Smith   PLogObjectParent(mat,a->B);
14308a729477SBarry Smith   *newmat = mat;
14318a729477SBarry Smith   return 0;
14328a729477SBarry Smith }
1433416022c9SBarry Smith 
1434416022c9SBarry Smith #include "sysio.h"
1435416022c9SBarry Smith 
143602834360SBarry Smith int MatLoad_MPIAIJorMPIRow(Viewer bview,MatType type,Mat *newmat)
1437416022c9SBarry Smith {
1438d65a2f8fSBarry Smith   Mat          A;
1439416022c9SBarry Smith   int          i, nz, ierr, j,rstart, rend, fd;
1440d65a2f8fSBarry Smith   Scalar       *vals,*svals;
1441416022c9SBarry Smith   PetscObject  vobj = (PetscObject) bview;
1442416022c9SBarry Smith   MPI_Comm     comm = vobj->comm;
1443416022c9SBarry Smith   MPI_Status   status;
144417699dbbSLois Curfman McInnes   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols;
1445d65a2f8fSBarry Smith   int          *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols;
1446d65a2f8fSBarry Smith   int          tag = ((PetscObject)bview)->tag;
1447416022c9SBarry Smith 
144817699dbbSLois Curfman McInnes   MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank);
144917699dbbSLois Curfman McInnes   if (!rank) {
1450416022c9SBarry Smith     ierr = ViewerFileGetDescriptor_Private(bview,&fd); CHKERRQ(ierr);
1451416022c9SBarry Smith     ierr = SYRead(fd,(char *)header,4,SYINT); CHKERRQ(ierr);
145202834360SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:not matrix object");
1453416022c9SBarry Smith   }
1454416022c9SBarry Smith 
1455416022c9SBarry Smith   MPI_Bcast(header+1,3,MPI_INT,0,comm);
1456416022c9SBarry Smith   M = header[1]; N = header[2];
1457416022c9SBarry Smith   /* determine ownership of all rows */
145817699dbbSLois Curfman McInnes   m = M/size + ((M % size) > rank);
145917699dbbSLois Curfman McInnes   rowners = (int *) PETSCMALLOC((size+2)*sizeof(int)); CHKPTRQ(rowners);
1460416022c9SBarry Smith   MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);
1461416022c9SBarry Smith   rowners[0] = 0;
146217699dbbSLois Curfman McInnes   for ( i=2; i<=size; i++ ) {
1463416022c9SBarry Smith     rowners[i] += rowners[i-1];
1464416022c9SBarry Smith   }
146517699dbbSLois Curfman McInnes   rstart = rowners[rank];
146617699dbbSLois Curfman McInnes   rend   = rowners[rank+1];
1467416022c9SBarry Smith 
1468416022c9SBarry Smith   /* distribute row lengths to all processors */
1469416022c9SBarry Smith   ourlens = (int*) PETSCMALLOC( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens);
1470416022c9SBarry Smith   offlens = ourlens + (rend-rstart);
147117699dbbSLois Curfman McInnes   if (!rank) {
1472416022c9SBarry Smith     rowlengths = (int*) PETSCMALLOC( M*sizeof(int) ); CHKPTRQ(rowlengths);
1473416022c9SBarry Smith     ierr = SYRead(fd,rowlengths,M,SYINT); CHKERRQ(ierr);
147417699dbbSLois Curfman McInnes     sndcounts = (int*) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(sndcounts);
147517699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i];
1476d65a2f8fSBarry Smith     MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);
14776ef5f50fSLois Curfman McInnes     PETSCFREE(sndcounts);
1478416022c9SBarry Smith   }
1479416022c9SBarry Smith   else {
1480416022c9SBarry Smith     MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);
1481416022c9SBarry Smith   }
1482416022c9SBarry Smith 
148317699dbbSLois Curfman McInnes   if (!rank) {
1484416022c9SBarry Smith     /* calculate the number of nonzeros on each processor */
148517699dbbSLois Curfman McInnes     procsnz = (int*) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(procsnz);
148617699dbbSLois Curfman McInnes     PetscZero(procsnz,size*sizeof(int));
148717699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) {
1488416022c9SBarry Smith       for ( j=rowners[i]; j< rowners[i+1]; j++ ) {
1489416022c9SBarry Smith         procsnz[i] += rowlengths[j];
1490416022c9SBarry Smith       }
1491416022c9SBarry Smith     }
14926ef5f50fSLois Curfman McInnes     PETSCFREE(rowlengths);
1493416022c9SBarry Smith 
1494416022c9SBarry Smith     /* determine max buffer needed and allocate it */
1495416022c9SBarry Smith     maxnz = 0;
149617699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) {
1497416022c9SBarry Smith       maxnz = PETSCMAX(maxnz,procsnz[i]);
1498416022c9SBarry Smith     }
1499416022c9SBarry Smith     cols = (int *) PETSCMALLOC( maxnz*sizeof(int) ); CHKPTRQ(cols);
1500416022c9SBarry Smith 
1501416022c9SBarry Smith     /* read in my part of the matrix column indices  */
1502416022c9SBarry Smith     nz = procsnz[0];
1503d65a2f8fSBarry Smith     mycols = (int *) PETSCMALLOC( nz*sizeof(int) ); CHKPTRQ(mycols);
1504d65a2f8fSBarry Smith     ierr = SYRead(fd,mycols,nz,SYINT); CHKERRQ(ierr);
1505d65a2f8fSBarry Smith 
1506d65a2f8fSBarry Smith     /* read in every one elses and ship off */
150717699dbbSLois Curfman McInnes     for ( i=1; i<size; i++ ) {
1508d65a2f8fSBarry Smith       nz = procsnz[i];
1509416022c9SBarry Smith       ierr = SYRead(fd,cols,nz,SYINT); CHKERRQ(ierr);
1510d65a2f8fSBarry Smith       MPI_Send(cols,nz,MPI_INT,i,tag,comm);
1511d65a2f8fSBarry Smith     }
1512d65a2f8fSBarry Smith     PETSCFREE(cols);
1513416022c9SBarry Smith   }
1514416022c9SBarry Smith   else {
1515416022c9SBarry Smith     /* determine buffer space needed for message */
1516416022c9SBarry Smith     nz = 0;
1517416022c9SBarry Smith     for ( i=0; i<m; i++ ) {
1518416022c9SBarry Smith       nz += ourlens[i];
1519416022c9SBarry Smith     }
1520d65a2f8fSBarry Smith     mycols = (int*) PETSCMALLOC( nz*sizeof(int) ); CHKPTRQ(mycols);
1521416022c9SBarry Smith 
1522416022c9SBarry Smith     /* receive message of column indices*/
1523d65a2f8fSBarry Smith     MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);
1524416022c9SBarry Smith     MPI_Get_count(&status,MPI_INT,&maxnz);
152502834360SBarry Smith     if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file");
1526416022c9SBarry Smith   }
1527416022c9SBarry Smith 
1528416022c9SBarry Smith   /* loop over local rows, determining number of off diagonal entries */
1529416022c9SBarry Smith   PetscZero(offlens,m*sizeof(int));
1530416022c9SBarry Smith   jj = 0;
1531416022c9SBarry Smith   for ( i=0; i<m; i++ ) {
1532416022c9SBarry Smith     for ( j=0; j<ourlens[i]; j++ ) {
1533d65a2f8fSBarry Smith       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
1534416022c9SBarry Smith       jj++;
1535416022c9SBarry Smith     }
1536416022c9SBarry Smith   }
1537d65a2f8fSBarry Smith 
1538d65a2f8fSBarry Smith   /* create our matrix */
1539416022c9SBarry Smith   for ( i=0; i<m; i++ ) {
1540416022c9SBarry Smith     ourlens[i] -= offlens[i];
1541416022c9SBarry Smith   }
1542d65a2f8fSBarry Smith   if (type == MATMPIAIJ) {
1543d65a2f8fSBarry Smith     ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr);
1544d65a2f8fSBarry Smith   }
1545d65a2f8fSBarry Smith   else if (type == MATMPIROW) {
1546d65a2f8fSBarry Smith     ierr = MatCreateMPIRow(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr);
1547d65a2f8fSBarry Smith   }
1548d65a2f8fSBarry Smith   A = *newmat;
1549d65a2f8fSBarry Smith   MatSetOption(A,COLUMNS_SORTED);
1550d65a2f8fSBarry Smith   for ( i=0; i<m; i++ ) {
1551d65a2f8fSBarry Smith     ourlens[i] += offlens[i];
1552d65a2f8fSBarry Smith   }
1553416022c9SBarry Smith 
155417699dbbSLois Curfman McInnes   if (!rank) {
1555416022c9SBarry Smith     vals = (Scalar *) PETSCMALLOC( maxnz*sizeof(Scalar) ); CHKPTRQ(vals);
1556416022c9SBarry Smith 
1557416022c9SBarry Smith     /* read in my part of the matrix numerical values  */
1558416022c9SBarry Smith     nz = procsnz[0];
1559416022c9SBarry Smith     ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr);
1560d65a2f8fSBarry Smith 
1561d65a2f8fSBarry Smith     /* insert into matrix */
1562d65a2f8fSBarry Smith     jj      = rstart;
1563d65a2f8fSBarry Smith     smycols = mycols;
1564d65a2f8fSBarry Smith     svals   = vals;
1565d65a2f8fSBarry Smith     for ( i=0; i<m; i++ ) {
1566d65a2f8fSBarry Smith       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1567d65a2f8fSBarry Smith       smycols += ourlens[i];
1568d65a2f8fSBarry Smith       svals   += ourlens[i];
1569d65a2f8fSBarry Smith       jj++;
1570416022c9SBarry Smith     }
1571416022c9SBarry Smith 
1572d65a2f8fSBarry Smith     /* read in other processors and ship out */
157317699dbbSLois Curfman McInnes     for ( i=1; i<size; i++ ) {
1574416022c9SBarry Smith       nz = procsnz[i];
1575416022c9SBarry Smith       ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr);
1576d65a2f8fSBarry Smith       MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);
1577416022c9SBarry Smith     }
15786ef5f50fSLois Curfman McInnes     PETSCFREE(procsnz);
1579416022c9SBarry Smith   }
1580d65a2f8fSBarry Smith   else {
1581d65a2f8fSBarry Smith     /* receive numeric values */
1582d65a2f8fSBarry Smith     vals = (Scalar*) PETSCMALLOC( nz*sizeof(Scalar) ); CHKPTRQ(vals);
1583416022c9SBarry Smith 
1584d65a2f8fSBarry Smith     /* receive message of values*/
1585d65a2f8fSBarry Smith     MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);
1586d65a2f8fSBarry Smith     MPI_Get_count(&status,MPIU_SCALAR,&maxnz);
158702834360SBarry Smith     if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file");
1588d65a2f8fSBarry Smith 
1589d65a2f8fSBarry Smith     /* insert into matrix */
1590d65a2f8fSBarry Smith     jj      = rstart;
1591d65a2f8fSBarry Smith     smycols = mycols;
1592d65a2f8fSBarry Smith     svals   = vals;
1593d65a2f8fSBarry Smith     for ( i=0; i<m; i++ ) {
1594d65a2f8fSBarry Smith       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1595d65a2f8fSBarry Smith       smycols += ourlens[i];
1596d65a2f8fSBarry Smith       svals   += ourlens[i];
1597d65a2f8fSBarry Smith       jj++;
1598d65a2f8fSBarry Smith     }
1599d65a2f8fSBarry Smith   }
16006ef5f50fSLois Curfman McInnes   PETSCFREE(ourlens); PETSCFREE(vals); PETSCFREE(mycols); PETSCFREE(rowners);
1601d65a2f8fSBarry Smith 
1602d65a2f8fSBarry Smith   ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
1603d65a2f8fSBarry Smith   ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
1604416022c9SBarry Smith   return 0;
1605416022c9SBarry Smith }
1606