1cb512458SBarry Smith #ifndef lint 2*0452661fSBarry Smith static char vcid[] = "$Id: mpiaij.c,v 1.96 1995/11/01 19:10:10 bsmith Exp bsmith $"; 3cb512458SBarry Smith #endif 48a729477SBarry Smith 51eb62cbbSBarry Smith #include "mpiaij.h" 68a729477SBarry Smith #include "vec/vecimpl.h" 7d6dfbf8fSBarry Smith #include "inline/spops.h" 88a729477SBarry Smith 99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column 109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 119e25ed09SBarry Smith storage of the matrix. This is done in a non scable way since the 129e25ed09SBarry Smith length of colmap equals the global matrix length. 139e25ed09SBarry Smith */ 14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat) 159e25ed09SBarry Smith { 1644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 17ec8511deSBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data; 18416022c9SBarry Smith int n = B->n,i,shift = B->indexshift; 19dbb450caSBarry Smith 20*0452661fSBarry Smith aij->colmap = (int *) PetscMalloc(aij->N*sizeof(int));CHKPTRQ(aij->colmap); 21464493b3SBarry Smith PLogObjectMemory(mat,aij->N*sizeof(int)); 22cddf8d76SBarry Smith PetscMemzero(aij->colmap,aij->N*sizeof(int)); 23dbb450caSBarry Smith for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i-shift; 249e25ed09SBarry Smith return 0; 259e25ed09SBarry Smith } 269e25ed09SBarry Smith 272493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat); 282493cbb0SBarry Smith 2951c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm) 30299609e3SLois Curfman McInnes { 31299609e3SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 32299609e3SLois Curfman McInnes int ierr; 3317699dbbSLois Curfman McInnes if (aij->size == 1) { 3451c98ccdSLois Curfman McInnes ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr); 3548d91487SBarry Smith } else SETERRQ(1,"MatGetReordering_MPIAIJ:not supported in parallel"); 36299609e3SLois Curfman McInnes return 0; 37299609e3SLois Curfman McInnes } 38299609e3SLois Curfman McInnes 392ee70a88SLois Curfman McInnes static int MatSetValues_MPIAIJ(Mat mat,int m,int *idxm,int n, 401eb62cbbSBarry Smith int *idxn,Scalar *v,InsertMode addv) 418a729477SBarry Smith { 4244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 43dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ*) aij->A->data; 441eb62cbbSBarry Smith int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 451eb62cbbSBarry Smith int cstart = aij->cstart, cend = aij->cend,row,col; 46dbb450caSBarry Smith int shift = C->indexshift; 478a729477SBarry Smith 4864119d58SLois Curfman McInnes if (aij->insertmode != NOT_SET_VALUES && aij->insertmode != addv) { 4948d91487SBarry Smith SETERRQ(1,"MatSetValues_MPIAIJ:Cannot mix inserts and adds"); 508a729477SBarry Smith } 511eb62cbbSBarry Smith aij->insertmode = addv; 528a729477SBarry Smith for ( i=0; i<m; i++ ) { 53bbb6d6a8SBarry Smith if (idxm[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row"); 54bbb6d6a8SBarry Smith if (idxm[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large"); 551eb62cbbSBarry Smith if (idxm[i] >= rstart && idxm[i] < rend) { 561eb62cbbSBarry Smith row = idxm[i] - rstart; 571eb62cbbSBarry Smith for ( j=0; j<n; j++ ) { 58bbb6d6a8SBarry Smith if (idxn[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column"); 59bbb6d6a8SBarry Smith if (idxn[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large"); 601eb62cbbSBarry Smith if (idxn[j] >= cstart && idxn[j] < cend){ 611eb62cbbSBarry Smith col = idxn[j] - cstart; 6278b31e54SBarry Smith ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 631eb62cbbSBarry Smith } 641eb62cbbSBarry Smith else { 65d6dfbf8fSBarry Smith if (aij->assembled) { 66b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 67dbb450caSBarry Smith col = aij->colmap[idxn[j]] + shift; 68ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 692493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 702493cbb0SBarry Smith col = idxn[j]; 71d6dfbf8fSBarry Smith } 729e25ed09SBarry Smith } 739e25ed09SBarry Smith else col = idxn[j]; 7478b31e54SBarry Smith ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr); 751eb62cbbSBarry Smith } 761eb62cbbSBarry Smith } 771eb62cbbSBarry Smith } 781eb62cbbSBarry Smith else { 79416022c9SBarry Smith ierr = StashValues_Private(&aij->stash,idxm[i],n,idxn,v+i*n,addv);CHKERRQ(ierr); 801eb62cbbSBarry Smith } 818a729477SBarry Smith } 828a729477SBarry Smith return 0; 838a729477SBarry Smith } 848a729477SBarry Smith 85fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode) 868a729477SBarry Smith { 8744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 88d6dfbf8fSBarry Smith MPI_Comm comm = mat->comm; 8917699dbbSLois Curfman McInnes int size = aij->size, *owners = aij->rowners; 9017699dbbSLois Curfman McInnes int rank = aij->rank,tag = mat->tag, *owner,*starts,count,ierr; 911eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 926abc6512SBarry Smith int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 931eb62cbbSBarry Smith InsertMode addv; 941eb62cbbSBarry Smith Scalar *rvalues,*svalues; 951eb62cbbSBarry Smith 961eb62cbbSBarry Smith /* make sure all processors are either in INSERTMODE or ADDMODE */ 97d65a2f8fSBarry Smith MPI_Allreduce(&aij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 98dbb450caSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 99bbb6d6a8SBarry Smith SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added"); 1001eb62cbbSBarry Smith } 1011eb62cbbSBarry Smith aij->insertmode = addv; /* in case this processor had no cache */ 1021eb62cbbSBarry Smith 1031eb62cbbSBarry Smith /* first count number of contributors to each processor */ 104*0452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 105cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 106*0452661fSBarry Smith owner = (int *) PetscMalloc( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 1071eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1081eb62cbbSBarry Smith idx = aij->stash.idx[i]; 10917699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 1101eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 1111eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; break; 1128a729477SBarry Smith } 1138a729477SBarry Smith } 1148a729477SBarry Smith } 11517699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 1161eb62cbbSBarry Smith 1171eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 118*0452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 11917699dbbSLois Curfman McInnes MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm); 12017699dbbSLois Curfman McInnes nreceives = work[rank]; 12117699dbbSLois Curfman McInnes MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 12217699dbbSLois Curfman McInnes nmax = work[rank]; 123*0452661fSBarry Smith PetscFree(work); 1241eb62cbbSBarry Smith 1251eb62cbbSBarry Smith /* post receives: 1261eb62cbbSBarry Smith 1) each message will consist of ordered pairs 1271eb62cbbSBarry Smith (global index,value) we store the global index as a double 128d6dfbf8fSBarry Smith to simplify the message passing. 1291eb62cbbSBarry Smith 2) since we don't know how long each individual message is we 1301eb62cbbSBarry Smith allocate the largest needed buffer for each receive. Potentially 1311eb62cbbSBarry Smith this is a lot of wasted space. 1321eb62cbbSBarry Smith 1331eb62cbbSBarry Smith 1341eb62cbbSBarry Smith This could be done better. 1351eb62cbbSBarry Smith */ 136*0452661fSBarry Smith rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 13778b31e54SBarry Smith CHKPTRQ(rvalues); 138*0452661fSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request)); 13978b31e54SBarry Smith CHKPTRQ(recv_waits); 1401eb62cbbSBarry Smith for ( i=0; i<nreceives; i++ ) { 141416022c9SBarry Smith MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 1421eb62cbbSBarry Smith comm,recv_waits+i); 1431eb62cbbSBarry Smith } 1441eb62cbbSBarry Smith 1451eb62cbbSBarry Smith /* do sends: 1461eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 1471eb62cbbSBarry Smith the ith processor 1481eb62cbbSBarry Smith */ 149*0452661fSBarry Smith svalues = (Scalar *) PetscMalloc(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 150*0452661fSBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 15178b31e54SBarry Smith CHKPTRQ(send_waits); 152*0452661fSBarry Smith starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 1531eb62cbbSBarry Smith starts[0] = 0; 15417699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1551eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1561eb62cbbSBarry Smith svalues[3*starts[owner[i]]] = (Scalar) aij->stash.idx[i]; 1571eb62cbbSBarry Smith svalues[3*starts[owner[i]]+1] = (Scalar) aij->stash.idy[i]; 1581eb62cbbSBarry Smith svalues[3*(starts[owner[i]]++)+2] = aij->stash.array[i]; 1591eb62cbbSBarry Smith } 160*0452661fSBarry Smith PetscFree(owner); 1611eb62cbbSBarry Smith starts[0] = 0; 16217699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1631eb62cbbSBarry Smith count = 0; 16417699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 1651eb62cbbSBarry Smith if (procs[i]) { 166416022c9SBarry Smith MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag, 1671eb62cbbSBarry Smith comm,send_waits+count++); 1681eb62cbbSBarry Smith } 1691eb62cbbSBarry Smith } 170*0452661fSBarry Smith PetscFree(starts); PetscFree(nprocs); 1711eb62cbbSBarry Smith 1721eb62cbbSBarry Smith /* Free cache space */ 17378b31e54SBarry Smith ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr); 1741eb62cbbSBarry Smith 1751eb62cbbSBarry Smith aij->svalues = svalues; aij->rvalues = rvalues; 1761eb62cbbSBarry Smith aij->nsends = nsends; aij->nrecvs = nreceives; 1771eb62cbbSBarry Smith aij->send_waits = send_waits; aij->recv_waits = recv_waits; 1781eb62cbbSBarry Smith aij->rmax = nmax; 1791eb62cbbSBarry Smith 1801eb62cbbSBarry Smith return 0; 1811eb62cbbSBarry Smith } 18244a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat); 1831eb62cbbSBarry Smith 184fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode) 1851eb62cbbSBarry Smith { 18644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 187dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ *) aij->A->data; 1881eb62cbbSBarry Smith MPI_Status *send_status,recv_status; 189416022c9SBarry Smith int imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr; 190416022c9SBarry Smith int row,col,other_disassembled,shift = C->indexshift; 1911eb62cbbSBarry Smith Scalar *values,val; 1921eb62cbbSBarry Smith InsertMode addv = aij->insertmode; 1931eb62cbbSBarry Smith 1941eb62cbbSBarry Smith /* wait on receives */ 1951eb62cbbSBarry Smith while (count) { 196d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status); 1971eb62cbbSBarry Smith /* unpack receives into our local space */ 198d6dfbf8fSBarry Smith values = aij->rvalues + 3*imdex*aij->rmax; 199c60448a5SBarry Smith MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 2001eb62cbbSBarry Smith n = n/3; 2011eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 2021eb62cbbSBarry Smith row = (int) PETSCREAL(values[3*i]) - aij->rstart; 2031eb62cbbSBarry Smith col = (int) PETSCREAL(values[3*i+1]); 2041eb62cbbSBarry Smith val = values[3*i+2]; 2051eb62cbbSBarry Smith if (col >= aij->cstart && col < aij->cend) { 2061eb62cbbSBarry Smith col -= aij->cstart; 2071eb62cbbSBarry Smith MatSetValues(aij->A,1,&row,1,&col,&val,addv); 2081eb62cbbSBarry Smith } 2091eb62cbbSBarry Smith else { 210d6dfbf8fSBarry Smith if (aij->assembled) { 211b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 212dbb450caSBarry Smith col = aij->colmap[col] + shift; 213ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 2142493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2152493cbb0SBarry Smith col = (int) PETSCREAL(values[3*i+1]); 216d6dfbf8fSBarry Smith } 2179e25ed09SBarry Smith } 2181eb62cbbSBarry Smith MatSetValues(aij->B,1,&row,1,&col,&val,addv); 2191eb62cbbSBarry Smith } 2201eb62cbbSBarry Smith } 2211eb62cbbSBarry Smith count--; 2221eb62cbbSBarry Smith } 223*0452661fSBarry Smith PetscFree(aij->recv_waits); PetscFree(aij->rvalues); 2241eb62cbbSBarry Smith 2251eb62cbbSBarry Smith /* wait on sends */ 2261eb62cbbSBarry Smith if (aij->nsends) { 227*0452661fSBarry Smith send_status = (MPI_Status *) PetscMalloc(aij->nsends*sizeof(MPI_Status)); 22878b31e54SBarry Smith CHKPTRQ(send_status); 2291eb62cbbSBarry Smith MPI_Waitall(aij->nsends,aij->send_waits,send_status); 230*0452661fSBarry Smith PetscFree(send_status); 2311eb62cbbSBarry Smith } 232*0452661fSBarry Smith PetscFree(aij->send_waits); PetscFree(aij->svalues); 2331eb62cbbSBarry Smith 23464119d58SLois Curfman McInnes aij->insertmode = NOT_SET_VALUES; 23578b31e54SBarry Smith ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr); 23678b31e54SBarry Smith ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr); 2371eb62cbbSBarry Smith 2382493cbb0SBarry Smith /* determine if any processor has disassembled, if so we must 2392493cbb0SBarry Smith also disassemble ourselfs, in order that we may reassemble. */ 240416022c9SBarry Smith MPI_Allreduce(&aij->assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm); 2412493cbb0SBarry Smith if (aij->assembled && !other_disassembled) { 2422493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2432493cbb0SBarry Smith } 2442493cbb0SBarry Smith 2455e42470aSBarry Smith if (!aij->assembled && mode == FINAL_ASSEMBLY) { 24678b31e54SBarry Smith ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr); 247d6dfbf8fSBarry Smith aij->assembled = 1; 2485e42470aSBarry Smith } 24978b31e54SBarry Smith ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr); 25078b31e54SBarry Smith ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr); 2515e42470aSBarry Smith 2528a729477SBarry Smith return 0; 2538a729477SBarry Smith } 2548a729477SBarry Smith 2552ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A) 2561eb62cbbSBarry Smith { 25744a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 258dbd7a890SLois Curfman McInnes int ierr; 25978b31e54SBarry Smith ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 26078b31e54SBarry Smith ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 2611eb62cbbSBarry Smith return 0; 2621eb62cbbSBarry Smith } 2631eb62cbbSBarry Smith 2641eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the 2651eb62cbbSBarry Smith matrix is square and the column and row owerships are identical. 2661eb62cbbSBarry Smith This is a BUG. The only way to fix it seems to be to access 2671eb62cbbSBarry Smith aij->A and aij->B directly and not through the MatZeroRows() 2681eb62cbbSBarry Smith routine. 2691eb62cbbSBarry Smith */ 27044a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag) 2711eb62cbbSBarry Smith { 27244a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 27317699dbbSLois Curfman McInnes int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 2746abc6512SBarry Smith int *procs,*nprocs,j,found,idx,nsends,*work; 27517699dbbSLois Curfman McInnes int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 2765392566eSBarry Smith int *rvalues,tag = A->tag,count,base,slen,n,*source; 277d6dfbf8fSBarry Smith int *lens,imdex,*lrows,*values; 278d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 2791eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 2801eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 2811eb62cbbSBarry Smith IS istmp; 2821eb62cbbSBarry Smith 28348d91487SBarry Smith if (!l->assembled) SETERRQ(1,"MatZeroRows_MPIAIJ:Must assemble matrix"); 28478b31e54SBarry Smith ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr); 28578b31e54SBarry Smith ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 2861eb62cbbSBarry Smith 2871eb62cbbSBarry Smith /* first count number of contributors to each processor */ 288*0452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 289cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 290*0452661fSBarry Smith owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 2911eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 2921eb62cbbSBarry Smith idx = rows[i]; 2931eb62cbbSBarry Smith found = 0; 29417699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 2951eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 2961eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 2971eb62cbbSBarry Smith } 2981eb62cbbSBarry Smith } 299bbb6d6a8SBarry Smith if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range"); 3001eb62cbbSBarry Smith } 30117699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 3021eb62cbbSBarry Smith 3031eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 304*0452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 30517699dbbSLois Curfman McInnes MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm); 30617699dbbSLois Curfman McInnes nrecvs = work[rank]; 30717699dbbSLois Curfman McInnes MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 30817699dbbSLois Curfman McInnes nmax = work[rank]; 309*0452661fSBarry Smith PetscFree(work); 3101eb62cbbSBarry Smith 3111eb62cbbSBarry Smith /* post receives: */ 312*0452661fSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 31378b31e54SBarry Smith CHKPTRQ(rvalues); 314*0452661fSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request)); 31578b31e54SBarry Smith CHKPTRQ(recv_waits); 3161eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 317416022c9SBarry Smith MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 3181eb62cbbSBarry Smith } 3191eb62cbbSBarry Smith 3201eb62cbbSBarry Smith /* do sends: 3211eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 3221eb62cbbSBarry Smith the ith processor 3231eb62cbbSBarry Smith */ 324*0452661fSBarry Smith svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 325*0452661fSBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 32678b31e54SBarry Smith CHKPTRQ(send_waits); 327*0452661fSBarry Smith starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 3281eb62cbbSBarry Smith starts[0] = 0; 32917699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3301eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3311eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 3321eb62cbbSBarry Smith } 3331eb62cbbSBarry Smith ISRestoreIndices(is,&rows); 3341eb62cbbSBarry Smith 3351eb62cbbSBarry Smith starts[0] = 0; 33617699dbbSLois Curfman McInnes for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3371eb62cbbSBarry Smith count = 0; 33817699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 3391eb62cbbSBarry Smith if (procs[i]) { 340416022c9SBarry Smith MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++); 3411eb62cbbSBarry Smith } 3421eb62cbbSBarry Smith } 343*0452661fSBarry Smith PetscFree(starts); 3441eb62cbbSBarry Smith 34517699dbbSLois Curfman McInnes base = owners[rank]; 3461eb62cbbSBarry Smith 3471eb62cbbSBarry Smith /* wait on receives */ 348*0452661fSBarry Smith lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 3491eb62cbbSBarry Smith source = lens + nrecvs; 3501eb62cbbSBarry Smith count = nrecvs; slen = 0; 3511eb62cbbSBarry Smith while (count) { 352d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 3531eb62cbbSBarry Smith /* unpack receives into our local space */ 3541eb62cbbSBarry Smith MPI_Get_count(&recv_status,MPI_INT,&n); 355d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 356d6dfbf8fSBarry Smith lens[imdex] = n; 3571eb62cbbSBarry Smith slen += n; 3581eb62cbbSBarry Smith count--; 3591eb62cbbSBarry Smith } 360*0452661fSBarry Smith PetscFree(recv_waits); 3611eb62cbbSBarry Smith 3621eb62cbbSBarry Smith /* move the data into the send scatter */ 363*0452661fSBarry Smith lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 3641eb62cbbSBarry Smith count = 0; 3651eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 3661eb62cbbSBarry Smith values = rvalues + i*nmax; 3671eb62cbbSBarry Smith for ( j=0; j<lens[i]; j++ ) { 3681eb62cbbSBarry Smith lrows[count++] = values[j] - base; 3691eb62cbbSBarry Smith } 3701eb62cbbSBarry Smith } 371*0452661fSBarry Smith PetscFree(rvalues); PetscFree(lens); 372*0452661fSBarry Smith PetscFree(owner); PetscFree(nprocs); 3731eb62cbbSBarry Smith 3741eb62cbbSBarry Smith /* actually zap the local rows */ 375416022c9SBarry Smith ierr = ISCreateSeq(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 376464493b3SBarry Smith PLogObjectParent(A,istmp); 377*0452661fSBarry Smith PetscFree(lrows); 37878b31e54SBarry Smith ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 37978b31e54SBarry Smith ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 38078b31e54SBarry Smith ierr = ISDestroy(istmp); CHKERRQ(ierr); 3811eb62cbbSBarry Smith 3821eb62cbbSBarry Smith /* wait on sends */ 3831eb62cbbSBarry Smith if (nsends) { 384*0452661fSBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status)); 38578b31e54SBarry Smith CHKPTRQ(send_status); 3861eb62cbbSBarry Smith MPI_Waitall(nsends,send_waits,send_status); 387*0452661fSBarry Smith PetscFree(send_status); 3881eb62cbbSBarry Smith } 389*0452661fSBarry Smith PetscFree(send_waits); PetscFree(svalues); 3901eb62cbbSBarry Smith 3911eb62cbbSBarry Smith return 0; 3921eb62cbbSBarry Smith } 3931eb62cbbSBarry Smith 394416022c9SBarry Smith static int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy) 3951eb62cbbSBarry Smith { 396416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 3971eb62cbbSBarry Smith int ierr; 398416022c9SBarry Smith 39948d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix"); 40064119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 401416022c9SBarry Smith ierr = MatMult(a->A,xx,yy); CHKERRQ(ierr); 40264119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 403416022c9SBarry Smith ierr = MatMultAdd(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 4041eb62cbbSBarry Smith return 0; 4051eb62cbbSBarry Smith } 4061eb62cbbSBarry Smith 407416022c9SBarry Smith static int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 408da3a660dSBarry Smith { 409416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 410da3a660dSBarry Smith int ierr; 41148d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix"); 41264119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 413416022c9SBarry Smith ierr = MatMultAdd(a->A,xx,yy,zz); CHKERRQ(ierr); 41464119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 415416022c9SBarry Smith ierr = MatMultAdd(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 416da3a660dSBarry Smith return 0; 417da3a660dSBarry Smith } 418da3a660dSBarry Smith 419416022c9SBarry Smith static int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy) 420da3a660dSBarry Smith { 421416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 422da3a660dSBarry Smith int ierr; 423da3a660dSBarry Smith 42448d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMulTrans_MPIAIJ:must assemble matrix"); 425da3a660dSBarry Smith /* do nondiagonal part */ 426416022c9SBarry Smith ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr); 427da3a660dSBarry Smith /* send it on its way */ 428416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES, 42964119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 430da3a660dSBarry Smith /* do local part */ 431416022c9SBarry Smith ierr = MatMultTrans(a->A,xx,yy); CHKERRQ(ierr); 432da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 433da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 434da3a660dSBarry Smith /* but is not perhaps always true. */ 435416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES, 43664119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 437da3a660dSBarry Smith return 0; 438da3a660dSBarry Smith } 439da3a660dSBarry Smith 440416022c9SBarry Smith static int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 441da3a660dSBarry Smith { 442416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 443da3a660dSBarry Smith int ierr; 444da3a660dSBarry Smith 44548d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatMulTransAdd_MPIAIJ:must assemble matrix"); 446da3a660dSBarry Smith /* do nondiagonal part */ 447416022c9SBarry Smith ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr); 448da3a660dSBarry Smith /* send it on its way */ 449416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES, 45064119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 451da3a660dSBarry Smith /* do local part */ 452416022c9SBarry Smith ierr = MatMultTransAdd(a->A,xx,yy,zz); CHKERRQ(ierr); 453da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 454da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 455da3a660dSBarry Smith /* but is not perhaps always true. */ 456416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES, 45764119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 458da3a660dSBarry Smith return 0; 459da3a660dSBarry Smith } 460da3a660dSBarry Smith 4611eb62cbbSBarry Smith /* 4621eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 4631eb62cbbSBarry Smith diagonal block 4641eb62cbbSBarry Smith */ 465416022c9SBarry Smith static int MatGetDiagonal_MPIAIJ(Mat A,Vec v) 4661eb62cbbSBarry Smith { 467416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 46848d91487SBarry Smith if (!a->assembled) SETERRQ(1,"MatGetDiag_MPIAIJ:must assemble matrix"); 469416022c9SBarry Smith return MatGetDiagonal(a->A,v); 4701eb62cbbSBarry Smith } 4711eb62cbbSBarry Smith 47244a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj) 4731eb62cbbSBarry Smith { 4741eb62cbbSBarry Smith Mat mat = (Mat) obj; 47544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 4761eb62cbbSBarry Smith int ierr; 477a5a9c739SBarry Smith #if defined(PETSC_LOG) 4786e35fa57SLois Curfman McInnes PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N); 479a5a9c739SBarry Smith #endif 480*0452661fSBarry Smith PetscFree(aij->rowners); 48178b31e54SBarry Smith ierr = MatDestroy(aij->A); CHKERRQ(ierr); 48278b31e54SBarry Smith ierr = MatDestroy(aij->B); CHKERRQ(ierr); 483*0452661fSBarry Smith if (aij->colmap) PetscFree(aij->colmap); 484*0452661fSBarry Smith if (aij->garray) PetscFree(aij->garray); 4851eb62cbbSBarry Smith if (aij->lvec) VecDestroy(aij->lvec); 486a56f8943SBarry Smith if (aij->Mvctx) VecScatterDestroy(aij->Mvctx); 487*0452661fSBarry Smith PetscFree(aij); 488a5a9c739SBarry Smith PLogObjectDestroy(mat); 489*0452661fSBarry Smith PetscHeaderDestroy(mat); 4901eb62cbbSBarry Smith return 0; 4911eb62cbbSBarry Smith } 4927857610eSBarry Smith #include "draw.h" 493b16a3bb1SBarry Smith #include "pinclude/pviewer.h" 494ee50ffe9SBarry Smith 495416022c9SBarry Smith static int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer) 4961eb62cbbSBarry Smith { 497416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 498416022c9SBarry Smith int ierr; 499416022c9SBarry Smith 50017699dbbSLois Curfman McInnes if (aij->size == 1) { 501416022c9SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 502416022c9SBarry Smith } 503a523beb4SLois Curfman McInnes else SETERRQ(1,"MatView_MPIAIJ_Binary:Only uniprocessor output supported"); 504416022c9SBarry Smith return 0; 505416022c9SBarry Smith } 506416022c9SBarry Smith 507416022c9SBarry Smith static int MatView_MPIAIJ_ASCIIorDraw(Mat mat,Viewer viewer) 508416022c9SBarry Smith { 50944a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 510dbb450caSBarry Smith Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data; 511a56f8943SBarry Smith int ierr, format,shift = C->indexshift,rank; 512d13ab20cSBarry Smith PetscObject vobj = (PetscObject) viewer; 513d636dbe3SBarry Smith FILE *fd; 514416022c9SBarry Smith 515416022c9SBarry Smith if (vobj->type == ASCII_FILE_VIEWER || vobj->type == ASCII_FILES_VIEWER) { 516416022c9SBarry Smith ierr = ViewerFileGetFormat_Private(viewer,&format); 51708480c60SBarry Smith if (format == FILE_FORMAT_INFO_DETAILED) { 518a56f8943SBarry Smith int nz,nzalloc,mem; 519a56f8943SBarry Smith MPI_Comm_rank(mat->comm,&rank); 520a56f8943SBarry Smith ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr); 521a56f8943SBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&nz,&nzalloc,&mem); 522a56f8943SBarry Smith MPIU_Seq_begin(mat->comm,1); 523a56f8943SBarry Smith fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d \n",rank,aij->m,nz, 524a56f8943SBarry Smith nzalloc,mem); 52508480c60SBarry Smith ierr = MatGetInfo(aij->A,MAT_LOCAL,&nz,&nzalloc,&mem); 52608480c60SBarry Smith fprintf(fd,"[%d] on diagonal nz %d \n",rank,nz); 52708480c60SBarry Smith ierr = MatGetInfo(aij->B,MAT_LOCAL,&nz,&nzalloc,&mem); 52808480c60SBarry Smith fprintf(fd,"[%d] off diagonal nz %d \n",rank,nz); 529a56f8943SBarry Smith fflush(fd); 530a56f8943SBarry Smith MPIU_Seq_end(mat->comm,1); 531a56f8943SBarry Smith ierr = VecScatterView(aij->Mvctx,viewer); 532416022c9SBarry Smith return 0; 533416022c9SBarry Smith } 53408480c60SBarry Smith else if (format == FILE_FORMAT_INFO) { 53508480c60SBarry Smith return 0; 53608480c60SBarry Smith } 537416022c9SBarry Smith } 538416022c9SBarry Smith 539416022c9SBarry Smith if (vobj->type == ASCII_FILE_VIEWER) { 540d636dbe3SBarry Smith ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr); 5417f813858SBarry Smith MPIU_Seq_begin(mat->comm,1); 542d13ab20cSBarry Smith fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 54317699dbbSLois Curfman McInnes aij->rank,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart, 5441eb62cbbSBarry Smith aij->cend); 54578b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 54678b31e54SBarry Smith ierr = MatView(aij->B,viewer); CHKERRQ(ierr); 547d13ab20cSBarry Smith fflush(fd); 5487f813858SBarry Smith MPIU_Seq_end(mat->comm,1); 549d13ab20cSBarry Smith } 550416022c9SBarry Smith else { 551a56f8943SBarry Smith int size = aij->size; 552a56f8943SBarry Smith rank = aij->rank; 55317699dbbSLois Curfman McInnes if (size == 1) { 55478b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 55595373324SBarry Smith } 55695373324SBarry Smith else { 55795373324SBarry Smith /* assemble the entire matrix onto first processor. */ 55895373324SBarry Smith Mat A; 559ec8511deSBarry Smith Mat_SeqAIJ *Aloc; 5602eb8c8abSBarry Smith int M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct; 56195373324SBarry Smith Scalar *a; 5622ee70a88SLois Curfman McInnes 56317699dbbSLois Curfman McInnes if (!rank) { 564416022c9SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,0,0,0,&A);CHKERRQ(ierr); 56595373324SBarry Smith } 56695373324SBarry Smith else { 567416022c9SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,0,0,0,&A);CHKERRQ(ierr); 56895373324SBarry Smith } 569464493b3SBarry Smith PLogObjectParent(mat,A); 570416022c9SBarry Smith 57195373324SBarry Smith 57295373324SBarry Smith /* copy over the A part */ 573ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->A->data; 5742ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 57595373324SBarry Smith row = aij->rstart; 576dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;} 57795373324SBarry Smith for ( i=0; i<m; i++ ) { 578416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr); 57995373324SBarry Smith row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 58095373324SBarry Smith } 5812ee70a88SLois Curfman McInnes aj = Aloc->j; 582dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;} 58395373324SBarry Smith 58495373324SBarry Smith /* copy over the B part */ 585ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->B->data; 5862ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 58795373324SBarry Smith row = aij->rstart; 588*0452661fSBarry Smith ct = cols = (int *) PetscMalloc( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols); 589dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];} 59095373324SBarry Smith for ( i=0; i<m; i++ ) { 591416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr); 59295373324SBarry Smith row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 59395373324SBarry Smith } 594*0452661fSBarry Smith PetscFree(ct); 59578b31e54SBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 59678b31e54SBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 59717699dbbSLois Curfman McInnes if (!rank) { 59878b31e54SBarry Smith ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 59995373324SBarry Smith } 60078b31e54SBarry Smith ierr = MatDestroy(A); CHKERRQ(ierr); 60195373324SBarry Smith } 60295373324SBarry Smith } 6031eb62cbbSBarry Smith return 0; 6041eb62cbbSBarry Smith } 6051eb62cbbSBarry Smith 606416022c9SBarry Smith static int MatView_MPIAIJ(PetscObject obj,Viewer viewer) 607416022c9SBarry Smith { 608416022c9SBarry Smith Mat mat = (Mat) obj; 609416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 610416022c9SBarry Smith int ierr; 611416022c9SBarry Smith PetscObject vobj = (PetscObject) viewer; 612416022c9SBarry Smith 61348d91487SBarry Smith if (!aij->assembled) SETERRQ(1,"MatView_MPIAIJ:must assemble matrix"); 614416022c9SBarry Smith if (!viewer) { 615416022c9SBarry Smith viewer = STDOUT_VIEWER_SELF; vobj = (PetscObject) viewer; 616416022c9SBarry Smith } 617416022c9SBarry Smith if (vobj->cookie == DRAW_COOKIE && vobj->type == NULLWINDOW) return 0; 618416022c9SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILE_VIEWER) { 619416022c9SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr); 620416022c9SBarry Smith } 621416022c9SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILES_VIEWER) { 622416022c9SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr); 623416022c9SBarry Smith } 624416022c9SBarry Smith else if (vobj->cookie == DRAW_COOKIE) { 625416022c9SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr); 626416022c9SBarry Smith } 627416022c9SBarry Smith else if (vobj->type == BINARY_FILE_VIEWER) { 628416022c9SBarry Smith return MatView_MPIAIJ_Binary(mat,viewer); 629416022c9SBarry Smith } 630416022c9SBarry Smith return 0; 631416022c9SBarry Smith } 632416022c9SBarry Smith 633ec8511deSBarry Smith extern int MatMarkDiag_SeqAIJ(Mat); 6341eb62cbbSBarry Smith /* 6351eb62cbbSBarry Smith This has to provide several versions. 6361eb62cbbSBarry Smith 6371eb62cbbSBarry Smith 1) per sequential 6381eb62cbbSBarry Smith 2) a) use only local smoothing updating outer values only once. 6391eb62cbbSBarry Smith b) local smoothing updating outer values each inner iteration 640d6dfbf8fSBarry Smith 3) color updating out values betwen colors. 6411eb62cbbSBarry Smith */ 642fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag, 643dbb450caSBarry Smith double fshift,int its,Vec xx) 6448a729477SBarry Smith { 64544a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 646d6dfbf8fSBarry Smith Mat AA = mat->A, BB = mat->B; 647ec8511deSBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data; 6486abc6512SBarry Smith Scalar zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts; 6496abc6512SBarry Smith int ierr,*idx, *diag; 650416022c9SBarry Smith int n = mat->n, m = mat->m, i,shift = A->indexshift; 651da3a660dSBarry Smith Vec tt; 6528a729477SBarry Smith 65348d91487SBarry Smith if (!mat->assembled) SETERRQ(1,"MatRelax_MPIAIJ:must assemble matrix"); 6541eb62cbbSBarry Smith 655d6dfbf8fSBarry Smith VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls); 656dbb450caSBarry Smith xs = x + shift; /* shift by one for index start of 1 */ 657dbb450caSBarry Smith ls = ls + shift; 658ec8511deSBarry Smith if (!A->diag) {if ((ierr = MatMarkDiag_SeqAIJ(AA))) return ierr;} 659d6dfbf8fSBarry Smith diag = A->diag; 660acb40c82SBarry Smith if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) { 66148d91487SBarry Smith SETERRQ(1,"MatRelax_MPIAIJ:Option not supported"); 662acb40c82SBarry Smith } 663da3a660dSBarry Smith if (flag & SOR_EISENSTAT) { 664da3a660dSBarry Smith /* Let A = L + U + D; where L is lower trianglar, 665da3a660dSBarry Smith U is upper triangular, E is diagonal; This routine applies 666da3a660dSBarry Smith 667da3a660dSBarry Smith (L + E)^{-1} A (U + E)^{-1} 668da3a660dSBarry Smith 669da3a660dSBarry Smith to a vector efficiently using Eisenstat's trick. This is for 670da3a660dSBarry Smith the case of SSOR preconditioner, so E is D/omega where omega 671da3a660dSBarry Smith is the relaxation factor. 672da3a660dSBarry Smith */ 67378b31e54SBarry Smith ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr); 674464493b3SBarry Smith PLogObjectParent(matin,tt); 675da3a660dSBarry Smith VecGetArray(tt,&t); 676da3a660dSBarry Smith scale = (2.0/omega) - 1.0; 677da3a660dSBarry Smith /* x = (E + U)^{-1} b */ 678da3a660dSBarry Smith VecSet(&zero,mat->lvec); 67964119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 68078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 681da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 682da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 683dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 684dbb450caSBarry Smith v = A->a + diag[i] + !shift; 685da3a660dSBarry Smith sum = b[i]; 686da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 687dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 688da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 689dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 690dbb450caSBarry Smith v = B->a + B->i[i] + shift; 691da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 692da3a660dSBarry Smith x[i] = omega*(sum/d); 693da3a660dSBarry Smith } 69464119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 69578b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 696da3a660dSBarry Smith 697da3a660dSBarry Smith /* t = b - (2*E - D)x */ 698da3a660dSBarry Smith v = A->a; 699dbb450caSBarry Smith for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ + shift])*x[i]; } 700da3a660dSBarry Smith 701da3a660dSBarry Smith /* t = (E + L)^{-1}t */ 702dbb450caSBarry Smith ts = t + shift; /* shifted by one for index start of a or mat->j*/ 703da3a660dSBarry Smith diag = A->diag; 704da3a660dSBarry Smith VecSet(&zero,mat->lvec); 70564119d58SLois Curfman McInnes ierr = VecPipelineBegin(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 70678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 707da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 708da3a660dSBarry Smith n = diag[i] - A->i[i]; 709dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 710dbb450caSBarry Smith v = A->a + A->i[i] + shift; 711da3a660dSBarry Smith sum = t[i]; 712da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ts,v,idx,n); 713dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 714da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 715dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 716dbb450caSBarry Smith v = B->a + B->i[i] + shift; 717da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 718da3a660dSBarry Smith t[i] = omega*(sum/d); 719da3a660dSBarry Smith } 72064119d58SLois Curfman McInnes ierr = VecPipelineEnd(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 72178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 722da3a660dSBarry Smith /* x = x + t */ 723da3a660dSBarry Smith for ( i=0; i<m; i++ ) { x[i] += t[i]; } 724da3a660dSBarry Smith VecDestroy(tt); 725da3a660dSBarry Smith return 0; 726da3a660dSBarry Smith } 727da3a660dSBarry Smith 7281eb62cbbSBarry Smith 729d6dfbf8fSBarry Smith if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){ 730da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 731da3a660dSBarry Smith VecSet(&zero,mat->lvec); VecSet(&zero,xx); 732da3a660dSBarry Smith } 733da3a660dSBarry Smith else { 73464119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 73578b31e54SBarry Smith CHKERRQ(ierr); 73664119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 73778b31e54SBarry Smith CHKERRQ(ierr); 738da3a660dSBarry Smith } 739d6dfbf8fSBarry Smith while (its--) { 740d6dfbf8fSBarry Smith /* go down through the rows */ 74164119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 74278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 743d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 744d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 745dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 746dbb450caSBarry Smith v = A->a + A->i[i] + shift; 747d6dfbf8fSBarry Smith sum = b[i]; 748d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 749dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 750d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 751dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 752dbb450caSBarry Smith v = B->a + B->i[i] + shift; 753d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 754d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 755d6dfbf8fSBarry Smith } 75664119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 75778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 758d6dfbf8fSBarry Smith /* come up through the rows */ 75964119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 76078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 761d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 762d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 763dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 764dbb450caSBarry Smith v = A->a + A->i[i] + shift; 765d6dfbf8fSBarry Smith sum = b[i]; 766d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 767dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 768d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 769dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 770dbb450caSBarry Smith v = B->a + B->i[i] + shift; 771d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 772d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 773d6dfbf8fSBarry Smith } 77464119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 77578b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 776d6dfbf8fSBarry Smith } 777d6dfbf8fSBarry Smith } 778d6dfbf8fSBarry Smith else if (flag & SOR_FORWARD_SWEEP){ 779da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 780da3a660dSBarry Smith VecSet(&zero,mat->lvec); 78164119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 78278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 783da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 784da3a660dSBarry Smith n = diag[i] - A->i[i]; 785dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 786dbb450caSBarry Smith v = A->a + A->i[i] + shift; 787da3a660dSBarry Smith sum = b[i]; 788da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 789dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 790da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 791dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 792dbb450caSBarry Smith v = B->a + B->i[i] + shift; 793da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 794da3a660dSBarry Smith x[i] = omega*(sum/d); 795da3a660dSBarry Smith } 79664119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 79778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 798da3a660dSBarry Smith its--; 799da3a660dSBarry Smith } 800d6dfbf8fSBarry Smith while (its--) { 80164119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 80278b31e54SBarry Smith CHKERRQ(ierr); 80364119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 80478b31e54SBarry Smith CHKERRQ(ierr); 80564119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 80678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 807d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 808d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 809dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 810dbb450caSBarry Smith v = A->a + A->i[i] + shift; 811d6dfbf8fSBarry Smith sum = b[i]; 812d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 813dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 814d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 815dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 816dbb450caSBarry Smith v = B->a + B->i[i] + shift; 817d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 818d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 819d6dfbf8fSBarry Smith } 82064119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 82178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 822d6dfbf8fSBarry Smith } 823d6dfbf8fSBarry Smith } 824d6dfbf8fSBarry Smith else if (flag & SOR_BACKWARD_SWEEP){ 825da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 826da3a660dSBarry Smith VecSet(&zero,mat->lvec); 82764119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 82878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 829da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 830da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 831dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 832dbb450caSBarry Smith v = A->a + diag[i] + !shift; 833da3a660dSBarry Smith sum = b[i]; 834da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 835dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 836da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 837dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 838dbb450caSBarry Smith v = B->a + B->i[i] + shift; 839da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 840da3a660dSBarry Smith x[i] = omega*(sum/d); 841da3a660dSBarry Smith } 84264119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 84378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 844da3a660dSBarry Smith its--; 845da3a660dSBarry Smith } 846d6dfbf8fSBarry Smith while (its--) { 84764119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN, 84878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 84964119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN, 85078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 85164119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 85278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 853d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 854d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 855dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 856dbb450caSBarry Smith v = A->a + A->i[i] + shift; 857d6dfbf8fSBarry Smith sum = b[i]; 858d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 859dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 860d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 861dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 862dbb450caSBarry Smith v = B->a + B->i[i] + shift; 863d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 864d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 865d6dfbf8fSBarry Smith } 86664119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 86778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 868d6dfbf8fSBarry Smith } 869d6dfbf8fSBarry Smith } 870d6dfbf8fSBarry Smith else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 871da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 872dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 873da3a660dSBarry Smith } 87464119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 87578b31e54SBarry Smith CHKERRQ(ierr); 87664119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 87778b31e54SBarry Smith CHKERRQ(ierr); 878d6dfbf8fSBarry Smith while (its--) { 879d6dfbf8fSBarry Smith /* go down through the rows */ 880d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 881d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 882dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 883dbb450caSBarry Smith v = A->a + A->i[i] + shift; 884d6dfbf8fSBarry Smith sum = b[i]; 885d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 886dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 887d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 888dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 889dbb450caSBarry Smith v = B->a + B->i[i] + shift; 890d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 891d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 892d6dfbf8fSBarry Smith } 893d6dfbf8fSBarry Smith /* come up through the rows */ 894d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 895d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 896dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 897dbb450caSBarry Smith v = A->a + A->i[i] + shift; 898d6dfbf8fSBarry Smith sum = b[i]; 899d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 900dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 901d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 902dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 903dbb450caSBarry Smith v = B->a + B->i[i] + shift; 904d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 905d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 906d6dfbf8fSBarry Smith } 907d6dfbf8fSBarry Smith } 908d6dfbf8fSBarry Smith } 909d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 910da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 911dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 912da3a660dSBarry Smith } 91364119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 91478b31e54SBarry Smith CHKERRQ(ierr); 91564119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 91678b31e54SBarry Smith CHKERRQ(ierr); 917d6dfbf8fSBarry Smith while (its--) { 918d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 919d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 920dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 921dbb450caSBarry Smith v = A->a + A->i[i] + shift; 922d6dfbf8fSBarry Smith sum = b[i]; 923d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 924dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 925d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 926dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 927dbb450caSBarry Smith v = B->a + B->i[i] + shift; 928d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 929d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 930d6dfbf8fSBarry Smith } 931d6dfbf8fSBarry Smith } 932d6dfbf8fSBarry Smith } 933d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 934da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 935dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 936da3a660dSBarry Smith } 93764119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL, 93878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 93964119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL, 94078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 941d6dfbf8fSBarry Smith while (its--) { 942d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 943d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 944dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 945dbb450caSBarry Smith v = A->a + A->i[i] + shift; 946d6dfbf8fSBarry Smith sum = b[i]; 947d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 948dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 949d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 950dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 951dbb450caSBarry Smith v = B->a + B->i[i] + shift; 952d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 953d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 954d6dfbf8fSBarry Smith } 955d6dfbf8fSBarry Smith } 956d6dfbf8fSBarry Smith } 9578a729477SBarry Smith return 0; 9588a729477SBarry Smith } 959a66be287SLois Curfman McInnes 960fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz, 961fc76ce87SLois Curfman McInnes int *nzalloc,int *mem) 962a66be287SLois Curfman McInnes { 963a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 964a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 965a66be287SLois Curfman McInnes int ierr, isend[3], irecv[3], nzA, nzallocA, memA; 966a66be287SLois Curfman McInnes 96778b31e54SBarry Smith ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr); 96878b31e54SBarry Smith ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr); 969a66be287SLois Curfman McInnes isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA; 970a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 971a66be287SLois Curfman McInnes *nz = isend[0]; *nzalloc = isend[1]; *mem = isend[2]; 972a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 973d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_MAX,matin->comm); 974a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 975a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 976d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_SUM,matin->comm); 977a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 978a66be287SLois Curfman McInnes } 979a66be287SLois Curfman McInnes return 0; 980a66be287SLois Curfman McInnes } 981a66be287SLois Curfman McInnes 982299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*); 983299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*); 984299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double); 985299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *); 986299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec); 987299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec); 988299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec); 989299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec); 990299609e3SLois Curfman McInnes 991416022c9SBarry Smith static int MatSetOption_MPIAIJ(Mat A,MatOption op) 992c74985f6SBarry Smith { 993c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 994c74985f6SBarry Smith 995c0bbcb79SLois Curfman McInnes if (op == NO_NEW_NONZERO_LOCATIONS || 996c0bbcb79SLois Curfman McInnes op == YES_NEW_NONZERO_LOCATIONS || 997c0bbcb79SLois Curfman McInnes op == COLUMNS_SORTED || 998c0bbcb79SLois Curfman McInnes op == ROW_ORIENTED) { 999c0bbcb79SLois Curfman McInnes MatSetOption(a->A,op); 1000c0bbcb79SLois Curfman McInnes MatSetOption(a->B,op); 1001c74985f6SBarry Smith } 1002c0bbcb79SLois Curfman McInnes else if (op == ROWS_SORTED || 1003c0bbcb79SLois Curfman McInnes op == SYMMETRIC_MATRIX || 1004c0bbcb79SLois Curfman McInnes op == STRUCTURALLY_SYMMETRIC_MATRIX || 1005c0bbcb79SLois Curfman McInnes op == YES_NEW_DIAGONALS) 1006c0bbcb79SLois Curfman McInnes PLogInfo((PetscObject)A,"Info:MatSetOption_MPIAIJ:Option ignored\n"); 1007bbb6d6a8SBarry Smith else if (op == COLUMN_ORIENTED) 10084d39ef84SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:COLUMN_ORIENTED");} 1009c0bbcb79SLois Curfman McInnes else if (op == NO_NEW_DIAGONALS) 10104d39ef84SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:NO_NEW_DIAGONALS");} 1011c0bbcb79SLois Curfman McInnes else 10124d39ef84SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:unknown option");} 1013c74985f6SBarry Smith return 0; 1014c74985f6SBarry Smith } 1015c74985f6SBarry Smith 1016d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n) 1017c74985f6SBarry Smith { 101844a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1019c74985f6SBarry Smith *m = mat->M; *n = mat->N; 1020c74985f6SBarry Smith return 0; 1021c74985f6SBarry Smith } 1022c74985f6SBarry Smith 1023d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n) 1024c74985f6SBarry Smith { 102544a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1026b7c46309SBarry Smith *m = mat->m; *n = mat->N; 1027c74985f6SBarry Smith return 0; 1028c74985f6SBarry Smith } 1029c74985f6SBarry Smith 1030d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n) 1031c74985f6SBarry Smith { 103244a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1033c74985f6SBarry Smith *m = mat->rstart; *n = mat->rend; 1034c74985f6SBarry Smith return 0; 1035c74985f6SBarry Smith } 1036c74985f6SBarry Smith 103739e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 103839e00950SLois Curfman McInnes { 1039154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1040154123eaSLois Curfman McInnes Scalar *vworkA, *vworkB, **pvA, **pvB; 1041154123eaSLois Curfman McInnes int i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart; 1042154123eaSLois Curfman McInnes int nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend; 104339e00950SLois Curfman McInnes 1044416022c9SBarry Smith if (row < rstart || row >= rend) SETERRQ(1,"MatGetRow_MPIAIJ:only local rows") 1045abc0e9e4SLois Curfman McInnes lrow = row - rstart; 104639e00950SLois Curfman McInnes 1047154123eaSLois Curfman McInnes pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1048154123eaSLois Curfman McInnes if (!v) {pvA = 0; pvB = 0;} 1049154123eaSLois Curfman McInnes if (!idx) {pcA = 0; if (!v) pcB = 0;} 105078b31e54SBarry Smith ierr = MatGetRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 105178b31e54SBarry Smith ierr = MatGetRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1052154123eaSLois Curfman McInnes nztot = nzA + nzB; 1053154123eaSLois Curfman McInnes 1054154123eaSLois Curfman McInnes if (v || idx) { 1055154123eaSLois Curfman McInnes if (nztot) { 1056154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1057299609e3SLois Curfman McInnes int imark; 105848b35521SBarry Smith if (mat->assembled) { 1059154123eaSLois Curfman McInnes for (i=0; i<nzB; i++) cworkB[i] = mat->garray[cworkB[i]]; 106048b35521SBarry Smith } 1061154123eaSLois Curfman McInnes if (v) { 1062*0452661fSBarry Smith *v = (Scalar *) PetscMalloc( (nztot)*sizeof(Scalar) ); CHKPTRQ(*v); 106339e00950SLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1064154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*v)[i] = vworkB[i]; 1065154123eaSLois Curfman McInnes else break; 1066154123eaSLois Curfman McInnes } 1067154123eaSLois Curfman McInnes imark = i; 1068154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*v)[imark+i] = vworkA[i]; 1069299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*v)[nzA+i] = vworkB[i]; 1070154123eaSLois Curfman McInnes } 1071154123eaSLois Curfman McInnes if (idx) { 1072*0452661fSBarry Smith *idx = (int *) PetscMalloc( (nztot)*sizeof(int) ); CHKPTRQ(*idx); 1073154123eaSLois Curfman McInnes for (i=0; i<nzA; i++) cworkA[i] += cstart; 1074154123eaSLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 1075154123eaSLois Curfman McInnes if (cworkB[i] < cstart) (*idx)[i] = cworkB[i]; 1076154123eaSLois Curfman McInnes else break; 1077154123eaSLois Curfman McInnes } 1078154123eaSLois Curfman McInnes imark = i; 1079154123eaSLois Curfman McInnes for ( i=0; i<nzA; i++ ) (*idx)[imark+i] = cworkA[i]; 1080299609e3SLois Curfman McInnes for ( i=imark; i<nzB; i++ ) (*idx)[nzA+i] = cworkB[i]; 108139e00950SLois Curfman McInnes } 108239e00950SLois Curfman McInnes } 108339e00950SLois Curfman McInnes else {*idx = 0; *v=0;} 1084154123eaSLois Curfman McInnes } 108539e00950SLois Curfman McInnes *nz = nztot; 108678b31e54SBarry Smith ierr = MatRestoreRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 108778b31e54SBarry Smith ierr = MatRestoreRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 108839e00950SLois Curfman McInnes return 0; 108939e00950SLois Curfman McInnes } 109039e00950SLois Curfman McInnes 109139e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 109239e00950SLois Curfman McInnes { 1093*0452661fSBarry Smith if (idx) PetscFree(*idx); 1094*0452661fSBarry Smith if (v) PetscFree(*v); 109539e00950SLois Curfman McInnes return 0; 109639e00950SLois Curfman McInnes } 109739e00950SLois Curfman McInnes 1098cddf8d76SBarry Smith static int MatNorm_MPIAIJ(Mat mat,NormType type,double *norm) 1099855ac2c5SLois Curfman McInnes { 1100855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1101ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data; 1102416022c9SBarry Smith int ierr, i, j, cstart = aij->cstart,shift = amat->indexshift; 1103416022c9SBarry Smith double sum = 0.0; 110404ca555eSLois Curfman McInnes Scalar *v; 110504ca555eSLois Curfman McInnes 1106416022c9SBarry Smith if (!aij->assembled) SETERRQ(1,"MatNorm_MPIAIJ:Must assemble matrix"); 110717699dbbSLois Curfman McInnes if (aij->size == 1) { 110814183eadSLois Curfman McInnes ierr = MatNorm(aij->A,type,norm); CHKERRQ(ierr); 110937fa93a5SLois Curfman McInnes } else { 111004ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 111104ca555eSLois Curfman McInnes v = amat->a; 111204ca555eSLois Curfman McInnes for (i=0; i<amat->nz; i++ ) { 111304ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 111404ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 111504ca555eSLois Curfman McInnes #else 111604ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 111704ca555eSLois Curfman McInnes #endif 111804ca555eSLois Curfman McInnes } 111904ca555eSLois Curfman McInnes v = bmat->a; 112004ca555eSLois Curfman McInnes for (i=0; i<bmat->nz; i++ ) { 112104ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 112204ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 112304ca555eSLois Curfman McInnes #else 112404ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 112504ca555eSLois Curfman McInnes #endif 112604ca555eSLois Curfman McInnes } 112704ca555eSLois Curfman McInnes MPI_Allreduce((void*)&sum,(void*)norm,1,MPI_DOUBLE,MPI_SUM,mat->comm); 112804ca555eSLois Curfman McInnes *norm = sqrt(*norm); 112904ca555eSLois Curfman McInnes } 113004ca555eSLois Curfman McInnes else if (type == NORM_1) { /* max column norm */ 113104ca555eSLois Curfman McInnes double *tmp, *tmp2; 113204ca555eSLois Curfman McInnes int *jj, *garray = aij->garray; 1133*0452661fSBarry Smith tmp = (double *) PetscMalloc( aij->N*sizeof(double) ); CHKPTRQ(tmp); 1134*0452661fSBarry Smith tmp2 = (double *) PetscMalloc( aij->N*sizeof(double) ); CHKPTRQ(tmp2); 1135cddf8d76SBarry Smith PetscMemzero(tmp,aij->N*sizeof(double)); 113604ca555eSLois Curfman McInnes *norm = 0.0; 113704ca555eSLois Curfman McInnes v = amat->a; jj = amat->j; 113804ca555eSLois Curfman McInnes for ( j=0; j<amat->nz; j++ ) { 1139cddf8d76SBarry Smith tmp[cstart + *jj++ + shift] += PetscAbsScalar(*v++); 114004ca555eSLois Curfman McInnes } 114104ca555eSLois Curfman McInnes v = bmat->a; jj = bmat->j; 114204ca555eSLois Curfman McInnes for ( j=0; j<bmat->nz; j++ ) { 1143cddf8d76SBarry Smith tmp[garray[*jj++ + shift]] += PetscAbsScalar(*v++); 114404ca555eSLois Curfman McInnes } 114504ca555eSLois Curfman McInnes MPI_Allreduce((void*)tmp,(void*)tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm); 114604ca555eSLois Curfman McInnes for ( j=0; j<aij->N; j++ ) { 114704ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 114804ca555eSLois Curfman McInnes } 1149*0452661fSBarry Smith PetscFree(tmp); PetscFree(tmp2); 115004ca555eSLois Curfman McInnes } 115104ca555eSLois Curfman McInnes else if (type == NORM_INFINITY) { /* max row norm */ 1152515d9167SLois Curfman McInnes double ntemp = 0.0; 115304ca555eSLois Curfman McInnes for ( j=0; j<amat->m; j++ ) { 1154dbb450caSBarry Smith v = amat->a + amat->i[j] + shift; 115504ca555eSLois Curfman McInnes sum = 0.0; 115604ca555eSLois Curfman McInnes for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) { 1157cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 115804ca555eSLois Curfman McInnes } 1159dbb450caSBarry Smith v = bmat->a + bmat->i[j] + shift; 116004ca555eSLois Curfman McInnes for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) { 1161cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 116204ca555eSLois Curfman McInnes } 1163515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 116404ca555eSLois Curfman McInnes } 1165515d9167SLois Curfman McInnes MPI_Allreduce((void*)&ntemp,(void*)norm,1,MPI_DOUBLE,MPI_MAX,mat->comm); 116604ca555eSLois Curfman McInnes } 116704ca555eSLois Curfman McInnes else { 1168515d9167SLois Curfman McInnes SETERRQ(1,"MatNorm_MPIAIJ:No support for two norm"); 116904ca555eSLois Curfman McInnes } 117037fa93a5SLois Curfman McInnes } 1171855ac2c5SLois Curfman McInnes return 0; 1172855ac2c5SLois Curfman McInnes } 1173855ac2c5SLois Curfman McInnes 11740de55854SLois Curfman McInnes static int MatTranspose_MPIAIJ(Mat A,Mat *matout) 1175b7c46309SBarry Smith { 1176b7c46309SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1177dbb450caSBarry Smith Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data; 1178416022c9SBarry Smith int ierr,shift = Aloc->indexshift; 1179416022c9SBarry Smith Mat B; 1180b7c46309SBarry Smith int M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct; 1181b7c46309SBarry Smith Scalar *array; 1182b7c46309SBarry Smith 1183416022c9SBarry Smith if (!matout && M != N) SETERRQ(1,"MatTranspose_MPIAIJ:Square only in-place"); 1184b7c46309SBarry Smith ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,0,0,0,&B); 1185b7c46309SBarry Smith CHKERRQ(ierr); 1186b7c46309SBarry Smith 1187b7c46309SBarry Smith /* copy over the A part */ 1188ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->A->data; 1189b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1190b7c46309SBarry Smith row = a->rstart; 1191dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;} 1192b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1193416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1194b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 1195b7c46309SBarry Smith } 1196b7c46309SBarry Smith aj = Aloc->j; 1197dbb450caSBarry Smith for ( i=0; i<ai[m]|+shift; i++ ) {aj[i] -= a->cstart + shift;} 1198b7c46309SBarry Smith 1199b7c46309SBarry Smith /* copy over the B part */ 1200ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->B->data; 1201b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1202b7c46309SBarry Smith row = a->rstart; 1203*0452661fSBarry Smith ct = cols = (int *) PetscMalloc( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols); 1204dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];} 1205b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1206416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1207b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 1208b7c46309SBarry Smith } 1209*0452661fSBarry Smith PetscFree(ct); 1210b7c46309SBarry Smith ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 1211b7c46309SBarry Smith ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 12120de55854SLois Curfman McInnes if (matout) { 12130de55854SLois Curfman McInnes *matout = B; 12140de55854SLois Curfman McInnes } else { 12150de55854SLois Curfman McInnes /* This isn't really an in-place transpose .... but free data structures from a */ 1216*0452661fSBarry Smith PetscFree(a->rowners); 12170de55854SLois Curfman McInnes ierr = MatDestroy(a->A); CHKERRQ(ierr); 12180de55854SLois Curfman McInnes ierr = MatDestroy(a->B); CHKERRQ(ierr); 1219*0452661fSBarry Smith if (a->colmap) PetscFree(a->colmap); 1220*0452661fSBarry Smith if (a->garray) PetscFree(a->garray); 12210de55854SLois Curfman McInnes if (a->lvec) VecDestroy(a->lvec); 1222a56f8943SBarry Smith if (a->Mvctx) VecScatterDestroy(a->Mvctx); 1223*0452661fSBarry Smith PetscFree(a); 1224416022c9SBarry Smith PetscMemcpy(A,B,sizeof(struct _Mat)); 1225*0452661fSBarry Smith PetscHeaderDestroy(B); 12260de55854SLois Curfman McInnes } 1227b7c46309SBarry Smith return 0; 1228b7c46309SBarry Smith } 1229b7c46309SBarry Smith 1230fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *); 1231a56f8943SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat,Mat *,int); 1232d6dfbf8fSBarry Smith 12338a729477SBarry Smith /* -------------------------------------------------------------------*/ 12342ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ, 123539e00950SLois Curfman McInnes MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ, 123644a69424SLois Curfman McInnes MatMult_MPIAIJ,MatMultAdd_MPIAIJ, 123744a69424SLois Curfman McInnes MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ, 1238299609e3SLois Curfman McInnes MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ, 1239299609e3SLois Curfman McInnes MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ, 1240299609e3SLois Curfman McInnes MatLUFactor_MPIAIJ,0, 124144a69424SLois Curfman McInnes MatRelax_MPIAIJ, 1242b7c46309SBarry Smith MatTranspose_MPIAIJ, 1243a66be287SLois Curfman McInnes MatGetInfo_MPIAIJ,0, 1244855ac2c5SLois Curfman McInnes MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ, 1245ee50ffe9SBarry Smith MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ, 12461eb62cbbSBarry Smith 0, 1247299609e3SLois Curfman McInnes MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ, 1248299609e3SLois Curfman McInnes MatGetReordering_MPIAIJ, 1249299609e3SLois Curfman McInnes MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0, 1250d1710a03SLois Curfman McInnes MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ, 1251299609e3SLois Curfman McInnes MatILUFactorSymbolic_MPIAIJ,0, 1252ff7509f2SBarry Smith 0,0,MatConvert_MPIAIJ,0,0,MatCopyPrivate_MPIAIJ}; 12538a729477SBarry Smith 12541987afe7SBarry Smith /*@C 1255ff756334SLois Curfman McInnes MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format 1256ff756334SLois Curfman McInnes (the default parallel PETSc format). 12578a729477SBarry Smith 12588a729477SBarry Smith Input Parameters: 12591eb62cbbSBarry Smith . comm - MPI communicator 12607d3e4905SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 12617d3e4905SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated 12627d3e4905SLois Curfman McInnes if N is given) 12637d3e4905SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 12647d3e4905SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated 12657d3e4905SLois Curfman McInnes if n is given) 1266ab693e5aSLois Curfman McInnes . d_nz - number of nonzeros per row in diagonal portion of local submatrix 1267ff756334SLois Curfman McInnes (same for all local rows) 1268ab693e5aSLois Curfman McInnes . d_nzz - number of nonzeros per row in diagonal portion of local submatrix 1269ab693e5aSLois Curfman McInnes or null (possibly different for each row). You must leave room 1270ab693e5aSLois Curfman McInnes for the diagonal entry even if it is zero. 1271ab693e5aSLois Curfman McInnes . o_nz - number of nonzeros per row in off-diagonal portion of local 1272ab693e5aSLois Curfman McInnes submatrix (same for all local rows). 1273ab693e5aSLois Curfman McInnes . o_nzz - number of nonzeros per row in off-diagonal portion of local 1274ab693e5aSLois Curfman McInnes submatrix or null (possibly different for each row). 12758a729477SBarry Smith 1276ff756334SLois Curfman McInnes Output Parameter: 12778a729477SBarry Smith . newmat - the matrix 12788a729477SBarry Smith 1279ff756334SLois Curfman McInnes Notes: 1280ff756334SLois Curfman McInnes The AIJ format (also called the Yale sparse matrix format or 1281ff756334SLois Curfman McInnes compressed row storage), is fully compatible with standard Fortran 77 12820002213bSLois Curfman McInnes storage. That is, the stored row and column indices can begin at 12830002213bSLois Curfman McInnes either one (as in Fortran) or zero. See the users manual for details. 1284ff756334SLois Curfman McInnes 1285ff756334SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 1286ff756334SLois Curfman McInnes (possibly both). 1287ff756334SLois Curfman McInnes 1288e0245417SLois Curfman McInnes Storage Information: 1289e0245417SLois Curfman McInnes For a square global matrix we define each processor's diagonal portion 1290e0245417SLois Curfman McInnes to be its local rows and the corresponding columns (a square submatrix); 1291e0245417SLois Curfman McInnes each processor's off-diagonal portion encompasses the remainder of the 1292e0245417SLois Curfman McInnes local matrix (a rectangular submatrix). 1293e0245417SLois Curfman McInnes 1294e0245417SLois Curfman McInnes The user can specify preallocated storage for the diagonal part of 1295e0245417SLois Curfman McInnes the local submatrix with either d_nz or d_nnz (not both). Set both 1296e0245417SLois Curfman McInnes d_nz and d_nnz to zero for PETSc to control dynamic memory allocation. 1297e0245417SLois Curfman McInnes Likewise, specify preallocated storage for the off-diagonal part of 1298e0245417SLois Curfman McInnes the local submatrix with o_nz or o_nnz (not both). 1299ff756334SLois Curfman McInnes 1300dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel 1301ff756334SLois Curfman McInnes 1302fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues() 13038a729477SBarry Smith @*/ 13041eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N, 13051eb62cbbSBarry Smith int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat) 13068a729477SBarry Smith { 13078a729477SBarry Smith Mat mat; 1308416022c9SBarry Smith Mat_MPIAIJ *a; 13096abc6512SBarry Smith int ierr, i,sum[2],work[2]; 1310416022c9SBarry Smith 13118a729477SBarry Smith *newmat = 0; 1312*0452661fSBarry Smith PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm); 1313a5a9c739SBarry Smith PLogObjectCreate(mat); 1314*0452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a); 1315416022c9SBarry Smith PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 131644a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 131744a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 13188a729477SBarry Smith mat->factor = 0; 1319d6dfbf8fSBarry Smith 132064119d58SLois Curfman McInnes a->insertmode = NOT_SET_VALUES; 132117699dbbSLois Curfman McInnes MPI_Comm_rank(comm,&a->rank); 132217699dbbSLois Curfman McInnes MPI_Comm_size(comm,&a->size); 13231eb62cbbSBarry Smith 13241987afe7SBarry Smith if (m == PETSC_DECIDE && (d_nnz || o_nnz)) 13251987afe7SBarry Smith SETERRQ(1,"MatCreateMPIAIJ:Cannot have PETSc decide rows but set d_nnz or o_nnz"); 13261987afe7SBarry Smith 1327dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 13281eb62cbbSBarry Smith work[0] = m; work[1] = n; 1329d65a2f8fSBarry Smith MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm ); 1330dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE) M = sum[0]; 1331dbd7a890SLois Curfman McInnes if (N == PETSC_DECIDE) N = sum[1]; 13321eb62cbbSBarry Smith } 133317699dbbSLois Curfman McInnes if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);} 133417699dbbSLois Curfman McInnes if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);} 1335416022c9SBarry Smith a->m = m; 1336416022c9SBarry Smith a->n = n; 1337416022c9SBarry Smith a->N = N; 1338416022c9SBarry Smith a->M = M; 13391eb62cbbSBarry Smith 13401eb62cbbSBarry Smith /* build local table of row and column ownerships */ 1341*0452661fSBarry Smith a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 134217699dbbSLois Curfman McInnes PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+ 1343464493b3SBarry Smith sizeof(Mat_MPIAIJ)); 134417699dbbSLois Curfman McInnes a->cowners = a->rowners + a->size + 1; 1345416022c9SBarry Smith MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm); 1346416022c9SBarry Smith a->rowners[0] = 0; 134717699dbbSLois Curfman McInnes for ( i=2; i<=a->size; i++ ) { 1348416022c9SBarry Smith a->rowners[i] += a->rowners[i-1]; 13498a729477SBarry Smith } 135017699dbbSLois Curfman McInnes a->rstart = a->rowners[a->rank]; 135117699dbbSLois Curfman McInnes a->rend = a->rowners[a->rank+1]; 1352416022c9SBarry Smith MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm); 1353416022c9SBarry Smith a->cowners[0] = 0; 135417699dbbSLois Curfman McInnes for ( i=2; i<=a->size; i++ ) { 1355416022c9SBarry Smith a->cowners[i] += a->cowners[i-1]; 13568a729477SBarry Smith } 135717699dbbSLois Curfman McInnes a->cstart = a->cowners[a->rank]; 135817699dbbSLois Curfman McInnes a->cend = a->cowners[a->rank+1]; 13598a729477SBarry Smith 1360416022c9SBarry Smith ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&a->A); CHKERRQ(ierr); 1361416022c9SBarry Smith PLogObjectParent(mat,a->A); 1362416022c9SBarry Smith ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&a->B); CHKERRQ(ierr); 1363416022c9SBarry Smith PLogObjectParent(mat,a->B); 13648a729477SBarry Smith 13651eb62cbbSBarry Smith /* build cache for off array entries formed */ 1366416022c9SBarry Smith ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr); 1367416022c9SBarry Smith a->colmap = 0; 1368416022c9SBarry Smith a->garray = 0; 13698a729477SBarry Smith 13701eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 1371416022c9SBarry Smith a->lvec = 0; 1372416022c9SBarry Smith a->Mvctx = 0; 1373416022c9SBarry Smith a->assembled = 0; 13748a729477SBarry Smith 1375d6dfbf8fSBarry Smith *newmat = mat; 1376d6dfbf8fSBarry Smith return 0; 1377d6dfbf8fSBarry Smith } 1378c74985f6SBarry Smith 1379a56f8943SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat matin,Mat *newmat,int cpvalues) 1380d6dfbf8fSBarry Smith { 1381d6dfbf8fSBarry Smith Mat mat; 1382416022c9SBarry Smith Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data; 13832ee70a88SLois Curfman McInnes int ierr, len; 1384d6dfbf8fSBarry Smith 1385416022c9SBarry Smith if (!oldmat->assembled) SETERRQ(1,"MatCopyPrivate_MPIAIJ:Must assemble matrix"); 1386416022c9SBarry Smith *newmat = 0; 1387*0452661fSBarry Smith PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm); 1388a5a9c739SBarry Smith PLogObjectCreate(mat); 1389*0452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a); 1390416022c9SBarry Smith PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 139144a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 139244a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 1393d6dfbf8fSBarry Smith mat->factor = matin->factor; 1394d6dfbf8fSBarry Smith 1395416022c9SBarry Smith a->m = oldmat->m; 1396416022c9SBarry Smith a->n = oldmat->n; 1397416022c9SBarry Smith a->M = oldmat->M; 1398416022c9SBarry Smith a->N = oldmat->N; 1399d6dfbf8fSBarry Smith 1400416022c9SBarry Smith a->assembled = 1; 1401416022c9SBarry Smith a->rstart = oldmat->rstart; 1402416022c9SBarry Smith a->rend = oldmat->rend; 1403416022c9SBarry Smith a->cstart = oldmat->cstart; 1404416022c9SBarry Smith a->cend = oldmat->cend; 140517699dbbSLois Curfman McInnes a->size = oldmat->size; 140617699dbbSLois Curfman McInnes a->rank = oldmat->rank; 140764119d58SLois Curfman McInnes a->insertmode = NOT_SET_VALUES; 1408d6dfbf8fSBarry Smith 1409*0452661fSBarry Smith a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners); 141017699dbbSLois Curfman McInnes PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ)); 141117699dbbSLois Curfman McInnes PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int)); 1412416022c9SBarry Smith ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 14132ee70a88SLois Curfman McInnes if (oldmat->colmap) { 1414*0452661fSBarry Smith a->colmap = (int *) PetscMalloc((a->N)*sizeof(int));CHKPTRQ(a->colmap); 1415416022c9SBarry Smith PLogObjectMemory(mat,(a->N)*sizeof(int)); 1416416022c9SBarry Smith PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int)); 1417416022c9SBarry Smith } else a->colmap = 0; 1418ec8511deSBarry Smith if (oldmat->garray && (len = ((Mat_SeqAIJ *) (oldmat->B->data))->n)) { 1419*0452661fSBarry Smith a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray); 1420464493b3SBarry Smith PLogObjectMemory(mat,len*sizeof(int)); 1421416022c9SBarry Smith PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 1422416022c9SBarry Smith } else a->garray = 0; 1423d6dfbf8fSBarry Smith 1424416022c9SBarry Smith ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 1425416022c9SBarry Smith PLogObjectParent(mat,a->lvec); 1426a56f8943SBarry Smith ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 1427416022c9SBarry Smith PLogObjectParent(mat,a->Mvctx); 1428416022c9SBarry Smith ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 1429416022c9SBarry Smith PLogObjectParent(mat,a->A); 1430416022c9SBarry Smith ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 1431416022c9SBarry Smith PLogObjectParent(mat,a->B); 14328a729477SBarry Smith *newmat = mat; 14338a729477SBarry Smith return 0; 14348a729477SBarry Smith } 1435416022c9SBarry Smith 1436416022c9SBarry Smith #include "sysio.h" 1437416022c9SBarry Smith 143802834360SBarry Smith int MatLoad_MPIAIJorMPIRow(Viewer bview,MatType type,Mat *newmat) 1439416022c9SBarry Smith { 1440d65a2f8fSBarry Smith Mat A; 1441416022c9SBarry Smith int i, nz, ierr, j,rstart, rend, fd; 1442d65a2f8fSBarry Smith Scalar *vals,*svals; 1443416022c9SBarry Smith PetscObject vobj = (PetscObject) bview; 1444416022c9SBarry Smith MPI_Comm comm = vobj->comm; 1445416022c9SBarry Smith MPI_Status status; 144617699dbbSLois Curfman McInnes int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 1447d65a2f8fSBarry Smith int *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols; 1448d65a2f8fSBarry Smith int tag = ((PetscObject)bview)->tag; 1449416022c9SBarry Smith 145017699dbbSLois Curfman McInnes MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 145117699dbbSLois Curfman McInnes if (!rank) { 1452416022c9SBarry Smith ierr = ViewerFileGetDescriptor_Private(bview,&fd); CHKERRQ(ierr); 1453416022c9SBarry Smith ierr = SYRead(fd,(char *)header,4,SYINT); CHKERRQ(ierr); 145402834360SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:not matrix object"); 1455416022c9SBarry Smith } 1456416022c9SBarry Smith 1457416022c9SBarry Smith MPI_Bcast(header+1,3,MPI_INT,0,comm); 1458416022c9SBarry Smith M = header[1]; N = header[2]; 1459416022c9SBarry Smith /* determine ownership of all rows */ 146017699dbbSLois Curfman McInnes m = M/size + ((M % size) > rank); 1461*0452661fSBarry Smith rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 1462416022c9SBarry Smith MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm); 1463416022c9SBarry Smith rowners[0] = 0; 146417699dbbSLois Curfman McInnes for ( i=2; i<=size; i++ ) { 1465416022c9SBarry Smith rowners[i] += rowners[i-1]; 1466416022c9SBarry Smith } 146717699dbbSLois Curfman McInnes rstart = rowners[rank]; 146817699dbbSLois Curfman McInnes rend = rowners[rank+1]; 1469416022c9SBarry Smith 1470416022c9SBarry Smith /* distribute row lengths to all processors */ 1471*0452661fSBarry Smith ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens); 1472416022c9SBarry Smith offlens = ourlens + (rend-rstart); 147317699dbbSLois Curfman McInnes if (!rank) { 1474*0452661fSBarry Smith rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths); 1475416022c9SBarry Smith ierr = SYRead(fd,rowlengths,M,SYINT); CHKERRQ(ierr); 1476*0452661fSBarry Smith sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 147717699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i]; 1478d65a2f8fSBarry Smith MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm); 1479*0452661fSBarry Smith PetscFree(sndcounts); 1480416022c9SBarry Smith } 1481416022c9SBarry Smith else { 1482416022c9SBarry Smith MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm); 1483416022c9SBarry Smith } 1484416022c9SBarry Smith 148517699dbbSLois Curfman McInnes if (!rank) { 1486416022c9SBarry Smith /* calculate the number of nonzeros on each processor */ 1487*0452661fSBarry Smith procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 1488cddf8d76SBarry Smith PetscMemzero(procsnz,size*sizeof(int)); 148917699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 1490416022c9SBarry Smith for ( j=rowners[i]; j< rowners[i+1]; j++ ) { 1491416022c9SBarry Smith procsnz[i] += rowlengths[j]; 1492416022c9SBarry Smith } 1493416022c9SBarry Smith } 1494*0452661fSBarry Smith PetscFree(rowlengths); 1495416022c9SBarry Smith 1496416022c9SBarry Smith /* determine max buffer needed and allocate it */ 1497416022c9SBarry Smith maxnz = 0; 149817699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 1499*0452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 1500416022c9SBarry Smith } 1501*0452661fSBarry Smith cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 1502416022c9SBarry Smith 1503416022c9SBarry Smith /* read in my part of the matrix column indices */ 1504416022c9SBarry Smith nz = procsnz[0]; 1505*0452661fSBarry Smith mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 1506d65a2f8fSBarry Smith ierr = SYRead(fd,mycols,nz,SYINT); CHKERRQ(ierr); 1507d65a2f8fSBarry Smith 1508d65a2f8fSBarry Smith /* read in every one elses and ship off */ 150917699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1510d65a2f8fSBarry Smith nz = procsnz[i]; 1511416022c9SBarry Smith ierr = SYRead(fd,cols,nz,SYINT); CHKERRQ(ierr); 1512d65a2f8fSBarry Smith MPI_Send(cols,nz,MPI_INT,i,tag,comm); 1513d65a2f8fSBarry Smith } 1514*0452661fSBarry Smith PetscFree(cols); 1515416022c9SBarry Smith } 1516416022c9SBarry Smith else { 1517416022c9SBarry Smith /* determine buffer space needed for message */ 1518416022c9SBarry Smith nz = 0; 1519416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1520416022c9SBarry Smith nz += ourlens[i]; 1521416022c9SBarry Smith } 1522*0452661fSBarry Smith mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 1523416022c9SBarry Smith 1524416022c9SBarry Smith /* receive message of column indices*/ 1525d65a2f8fSBarry Smith MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 1526416022c9SBarry Smith MPI_Get_count(&status,MPI_INT,&maxnz); 152702834360SBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file"); 1528416022c9SBarry Smith } 1529416022c9SBarry Smith 1530416022c9SBarry Smith /* loop over local rows, determining number of off diagonal entries */ 1531cddf8d76SBarry Smith PetscMemzero(offlens,m*sizeof(int)); 1532416022c9SBarry Smith jj = 0; 1533416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1534416022c9SBarry Smith for ( j=0; j<ourlens[i]; j++ ) { 1535d65a2f8fSBarry Smith if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 1536416022c9SBarry Smith jj++; 1537416022c9SBarry Smith } 1538416022c9SBarry Smith } 1539d65a2f8fSBarry Smith 1540d65a2f8fSBarry Smith /* create our matrix */ 1541416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1542416022c9SBarry Smith ourlens[i] -= offlens[i]; 1543416022c9SBarry Smith } 1544d65a2f8fSBarry Smith if (type == MATMPIAIJ) { 1545d65a2f8fSBarry Smith ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1546d65a2f8fSBarry Smith } 1547d65a2f8fSBarry Smith else if (type == MATMPIROW) { 1548d65a2f8fSBarry Smith ierr = MatCreateMPIRow(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1549d65a2f8fSBarry Smith } 1550d65a2f8fSBarry Smith A = *newmat; 1551d65a2f8fSBarry Smith MatSetOption(A,COLUMNS_SORTED); 1552d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1553d65a2f8fSBarry Smith ourlens[i] += offlens[i]; 1554d65a2f8fSBarry Smith } 1555416022c9SBarry Smith 155617699dbbSLois Curfman McInnes if (!rank) { 1557*0452661fSBarry Smith vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals); 1558416022c9SBarry Smith 1559416022c9SBarry Smith /* read in my part of the matrix numerical values */ 1560416022c9SBarry Smith nz = procsnz[0]; 1561416022c9SBarry Smith ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr); 1562d65a2f8fSBarry Smith 1563d65a2f8fSBarry Smith /* insert into matrix */ 1564d65a2f8fSBarry Smith jj = rstart; 1565d65a2f8fSBarry Smith smycols = mycols; 1566d65a2f8fSBarry Smith svals = vals; 1567d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1568d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1569d65a2f8fSBarry Smith smycols += ourlens[i]; 1570d65a2f8fSBarry Smith svals += ourlens[i]; 1571d65a2f8fSBarry Smith jj++; 1572416022c9SBarry Smith } 1573416022c9SBarry Smith 1574d65a2f8fSBarry Smith /* read in other processors and ship out */ 157517699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1576416022c9SBarry Smith nz = procsnz[i]; 1577416022c9SBarry Smith ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr); 1578d65a2f8fSBarry Smith MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 1579416022c9SBarry Smith } 1580*0452661fSBarry Smith PetscFree(procsnz); 1581416022c9SBarry Smith } 1582d65a2f8fSBarry Smith else { 1583d65a2f8fSBarry Smith /* receive numeric values */ 1584*0452661fSBarry Smith vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals); 1585416022c9SBarry Smith 1586d65a2f8fSBarry Smith /* receive message of values*/ 1587d65a2f8fSBarry Smith MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 1588d65a2f8fSBarry Smith MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 158902834360SBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file"); 1590d65a2f8fSBarry Smith 1591d65a2f8fSBarry Smith /* insert into matrix */ 1592d65a2f8fSBarry Smith jj = rstart; 1593d65a2f8fSBarry Smith smycols = mycols; 1594d65a2f8fSBarry Smith svals = vals; 1595d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1596d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1597d65a2f8fSBarry Smith smycols += ourlens[i]; 1598d65a2f8fSBarry Smith svals += ourlens[i]; 1599d65a2f8fSBarry Smith jj++; 1600d65a2f8fSBarry Smith } 1601d65a2f8fSBarry Smith } 1602*0452661fSBarry Smith PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners); 1603d65a2f8fSBarry Smith 1604d65a2f8fSBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1605d65a2f8fSBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1606416022c9SBarry Smith return 0; 1607416022c9SBarry Smith } 1608