xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 0452661f6076db5def9dff5bdaf23ff50d8e3a7f)
1cb512458SBarry Smith #ifndef lint
2*0452661fSBarry Smith static char vcid[] = "$Id: mpiaij.c,v 1.96 1995/11/01 19:10:10 bsmith Exp bsmith $";
3cb512458SBarry Smith #endif
48a729477SBarry Smith 
51eb62cbbSBarry Smith #include "mpiaij.h"
68a729477SBarry Smith #include "vec/vecimpl.h"
7d6dfbf8fSBarry Smith #include "inline/spops.h"
88a729477SBarry Smith 
99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column
109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
119e25ed09SBarry Smith storage of the matrix.  This is done in a non scable way since the
129e25ed09SBarry Smith length of colmap equals the global matrix length.
139e25ed09SBarry Smith */
14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat)
159e25ed09SBarry Smith {
1644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
17ec8511deSBarry Smith   Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data;
18416022c9SBarry Smith   int        n = B->n,i,shift = B->indexshift;
19dbb450caSBarry Smith 
20*0452661fSBarry Smith   aij->colmap = (int *) PetscMalloc(aij->N*sizeof(int));CHKPTRQ(aij->colmap);
21464493b3SBarry Smith   PLogObjectMemory(mat,aij->N*sizeof(int));
22cddf8d76SBarry Smith   PetscMemzero(aij->colmap,aij->N*sizeof(int));
23dbb450caSBarry Smith   for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i-shift;
249e25ed09SBarry Smith   return 0;
259e25ed09SBarry Smith }
269e25ed09SBarry Smith 
272493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat);
282493cbb0SBarry Smith 
2951c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm)
30299609e3SLois Curfman McInnes {
31299609e3SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
32299609e3SLois Curfman McInnes   int ierr;
3317699dbbSLois Curfman McInnes   if (aij->size == 1) {
3451c98ccdSLois Curfman McInnes     ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr);
3548d91487SBarry Smith   } else SETERRQ(1,"MatGetReordering_MPIAIJ:not supported in parallel");
36299609e3SLois Curfman McInnes   return 0;
37299609e3SLois Curfman McInnes }
38299609e3SLois Curfman McInnes 
392ee70a88SLois Curfman McInnes static int MatSetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,
401eb62cbbSBarry Smith                                int *idxn,Scalar *v,InsertMode addv)
418a729477SBarry Smith {
4244a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
43dbb450caSBarry Smith   Mat_SeqAIJ *C = (Mat_SeqAIJ*) aij->A->data;
441eb62cbbSBarry Smith   int        ierr,i,j, rstart = aij->rstart, rend = aij->rend;
451eb62cbbSBarry Smith   int        cstart = aij->cstart, cend = aij->cend,row,col;
46dbb450caSBarry Smith   int        shift = C->indexshift;
478a729477SBarry Smith 
4864119d58SLois Curfman McInnes   if (aij->insertmode != NOT_SET_VALUES && aij->insertmode != addv) {
4948d91487SBarry Smith     SETERRQ(1,"MatSetValues_MPIAIJ:Cannot mix inserts and adds");
508a729477SBarry Smith   }
511eb62cbbSBarry Smith   aij->insertmode = addv;
528a729477SBarry Smith   for ( i=0; i<m; i++ ) {
53bbb6d6a8SBarry Smith     if (idxm[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row");
54bbb6d6a8SBarry Smith     if (idxm[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large");
551eb62cbbSBarry Smith     if (idxm[i] >= rstart && idxm[i] < rend) {
561eb62cbbSBarry Smith       row = idxm[i] - rstart;
571eb62cbbSBarry Smith       for ( j=0; j<n; j++ ) {
58bbb6d6a8SBarry Smith         if (idxn[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column");
59bbb6d6a8SBarry Smith         if (idxn[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large");
601eb62cbbSBarry Smith         if (idxn[j] >= cstart && idxn[j] < cend){
611eb62cbbSBarry Smith           col = idxn[j] - cstart;
6278b31e54SBarry Smith           ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr);
631eb62cbbSBarry Smith         }
641eb62cbbSBarry Smith         else {
65d6dfbf8fSBarry Smith           if (aij->assembled) {
66b7c46309SBarry Smith             if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);}
67dbb450caSBarry Smith             col = aij->colmap[idxn[j]] + shift;
68ec8511deSBarry Smith             if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
692493cbb0SBarry Smith               ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
702493cbb0SBarry Smith               col =  idxn[j];
71d6dfbf8fSBarry Smith             }
729e25ed09SBarry Smith           }
739e25ed09SBarry Smith           else col = idxn[j];
7478b31e54SBarry Smith           ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr);
751eb62cbbSBarry Smith         }
761eb62cbbSBarry Smith       }
771eb62cbbSBarry Smith     }
781eb62cbbSBarry Smith     else {
79416022c9SBarry Smith       ierr = StashValues_Private(&aij->stash,idxm[i],n,idxn,v+i*n,addv);CHKERRQ(ierr);
801eb62cbbSBarry Smith     }
818a729477SBarry Smith   }
828a729477SBarry Smith   return 0;
838a729477SBarry Smith }
848a729477SBarry Smith 
85fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode)
868a729477SBarry Smith {
8744a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
88d6dfbf8fSBarry Smith   MPI_Comm    comm = mat->comm;
8917699dbbSLois Curfman McInnes   int         size = aij->size, *owners = aij->rowners;
9017699dbbSLois Curfman McInnes   int         rank = aij->rank,tag = mat->tag, *owner,*starts,count,ierr;
911eb62cbbSBarry Smith   MPI_Request *send_waits,*recv_waits;
926abc6512SBarry Smith   int         *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
931eb62cbbSBarry Smith   InsertMode  addv;
941eb62cbbSBarry Smith   Scalar      *rvalues,*svalues;
951eb62cbbSBarry Smith 
961eb62cbbSBarry Smith   /* make sure all processors are either in INSERTMODE or ADDMODE */
97d65a2f8fSBarry Smith   MPI_Allreduce(&aij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);
98dbb450caSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
99bbb6d6a8SBarry Smith     SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added");
1001eb62cbbSBarry Smith   }
1011eb62cbbSBarry Smith   aij->insertmode = addv; /* in case this processor had no cache */
1021eb62cbbSBarry Smith 
1031eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
104*0452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
105cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
106*0452661fSBarry Smith   owner = (int *) PetscMalloc( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
1071eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
1081eb62cbbSBarry Smith     idx = aij->stash.idx[i];
10917699dbbSLois Curfman McInnes     for ( j=0; j<size; j++ ) {
1101eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
1111eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
1128a729477SBarry Smith       }
1138a729477SBarry Smith     }
1148a729477SBarry Smith   }
11517699dbbSLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
1161eb62cbbSBarry Smith 
1171eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
118*0452661fSBarry Smith   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
11917699dbbSLois Curfman McInnes   MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);
12017699dbbSLois Curfman McInnes   nreceives = work[rank];
12117699dbbSLois Curfman McInnes   MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);
12217699dbbSLois Curfman McInnes   nmax = work[rank];
123*0452661fSBarry Smith   PetscFree(work);
1241eb62cbbSBarry Smith 
1251eb62cbbSBarry Smith   /* post receives:
1261eb62cbbSBarry Smith        1) each message will consist of ordered pairs
1271eb62cbbSBarry Smith      (global index,value) we store the global index as a double
128d6dfbf8fSBarry Smith      to simplify the message passing.
1291eb62cbbSBarry Smith        2) since we don't know how long each individual message is we
1301eb62cbbSBarry Smith      allocate the largest needed buffer for each receive. Potentially
1311eb62cbbSBarry Smith      this is a lot of wasted space.
1321eb62cbbSBarry Smith 
1331eb62cbbSBarry Smith 
1341eb62cbbSBarry Smith        This could be done better.
1351eb62cbbSBarry Smith   */
136*0452661fSBarry Smith   rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));
13778b31e54SBarry Smith   CHKPTRQ(rvalues);
138*0452661fSBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));
13978b31e54SBarry Smith   CHKPTRQ(recv_waits);
1401eb62cbbSBarry Smith   for ( i=0; i<nreceives; i++ ) {
141416022c9SBarry Smith     MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,
1421eb62cbbSBarry Smith               comm,recv_waits+i);
1431eb62cbbSBarry Smith   }
1441eb62cbbSBarry Smith 
1451eb62cbbSBarry Smith   /* do sends:
1461eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
1471eb62cbbSBarry Smith          the ith processor
1481eb62cbbSBarry Smith   */
149*0452661fSBarry Smith   svalues = (Scalar *) PetscMalloc(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues);
150*0452661fSBarry Smith   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));
15178b31e54SBarry Smith   CHKPTRQ(send_waits);
152*0452661fSBarry Smith   starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts);
1531eb62cbbSBarry Smith   starts[0] = 0;
15417699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
1551eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
1561eb62cbbSBarry Smith     svalues[3*starts[owner[i]]]       = (Scalar)  aij->stash.idx[i];
1571eb62cbbSBarry Smith     svalues[3*starts[owner[i]]+1]     = (Scalar)  aij->stash.idy[i];
1581eb62cbbSBarry Smith     svalues[3*(starts[owner[i]]++)+2] =  aij->stash.array[i];
1591eb62cbbSBarry Smith   }
160*0452661fSBarry Smith   PetscFree(owner);
1611eb62cbbSBarry Smith   starts[0] = 0;
16217699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
1631eb62cbbSBarry Smith   count = 0;
16417699dbbSLois Curfman McInnes   for ( i=0; i<size; i++ ) {
1651eb62cbbSBarry Smith     if (procs[i]) {
166416022c9SBarry Smith       MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,
1671eb62cbbSBarry Smith                 comm,send_waits+count++);
1681eb62cbbSBarry Smith     }
1691eb62cbbSBarry Smith   }
170*0452661fSBarry Smith   PetscFree(starts); PetscFree(nprocs);
1711eb62cbbSBarry Smith 
1721eb62cbbSBarry Smith   /* Free cache space */
17378b31e54SBarry Smith   ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr);
1741eb62cbbSBarry Smith 
1751eb62cbbSBarry Smith   aij->svalues    = svalues;    aij->rvalues    = rvalues;
1761eb62cbbSBarry Smith   aij->nsends     = nsends;     aij->nrecvs     = nreceives;
1771eb62cbbSBarry Smith   aij->send_waits = send_waits; aij->recv_waits = recv_waits;
1781eb62cbbSBarry Smith   aij->rmax       = nmax;
1791eb62cbbSBarry Smith 
1801eb62cbbSBarry Smith   return 0;
1811eb62cbbSBarry Smith }
18244a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat);
1831eb62cbbSBarry Smith 
184fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode)
1851eb62cbbSBarry Smith {
18644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
187dbb450caSBarry Smith   Mat_SeqAIJ *C = (Mat_SeqAIJ *) aij->A->data;
1881eb62cbbSBarry Smith   MPI_Status  *send_status,recv_status;
189416022c9SBarry Smith   int         imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr;
190416022c9SBarry Smith   int         row,col,other_disassembled,shift = C->indexshift;
1911eb62cbbSBarry Smith   Scalar      *values,val;
1921eb62cbbSBarry Smith   InsertMode  addv = aij->insertmode;
1931eb62cbbSBarry Smith 
1941eb62cbbSBarry Smith   /*  wait on receives */
1951eb62cbbSBarry Smith   while (count) {
196d6dfbf8fSBarry Smith     MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status);
1971eb62cbbSBarry Smith     /* unpack receives into our local space */
198d6dfbf8fSBarry Smith     values = aij->rvalues + 3*imdex*aij->rmax;
199c60448a5SBarry Smith     MPI_Get_count(&recv_status,MPIU_SCALAR,&n);
2001eb62cbbSBarry Smith     n = n/3;
2011eb62cbbSBarry Smith     for ( i=0; i<n; i++ ) {
2021eb62cbbSBarry Smith       row = (int) PETSCREAL(values[3*i]) - aij->rstart;
2031eb62cbbSBarry Smith       col = (int) PETSCREAL(values[3*i+1]);
2041eb62cbbSBarry Smith       val = values[3*i+2];
2051eb62cbbSBarry Smith       if (col >= aij->cstart && col < aij->cend) {
2061eb62cbbSBarry Smith         col -= aij->cstart;
2071eb62cbbSBarry Smith         MatSetValues(aij->A,1,&row,1,&col,&val,addv);
2081eb62cbbSBarry Smith       }
2091eb62cbbSBarry Smith       else {
210d6dfbf8fSBarry Smith         if (aij->assembled) {
211b7c46309SBarry Smith           if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);}
212dbb450caSBarry Smith           col = aij->colmap[col] + shift;
213ec8511deSBarry Smith           if (col < 0  && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
2142493cbb0SBarry Smith             ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
2152493cbb0SBarry Smith             col = (int) PETSCREAL(values[3*i+1]);
216d6dfbf8fSBarry Smith           }
2179e25ed09SBarry Smith         }
2181eb62cbbSBarry Smith         MatSetValues(aij->B,1,&row,1,&col,&val,addv);
2191eb62cbbSBarry Smith       }
2201eb62cbbSBarry Smith     }
2211eb62cbbSBarry Smith     count--;
2221eb62cbbSBarry Smith   }
223*0452661fSBarry Smith   PetscFree(aij->recv_waits); PetscFree(aij->rvalues);
2241eb62cbbSBarry Smith 
2251eb62cbbSBarry Smith   /* wait on sends */
2261eb62cbbSBarry Smith   if (aij->nsends) {
227*0452661fSBarry Smith     send_status = (MPI_Status *) PetscMalloc(aij->nsends*sizeof(MPI_Status));
22878b31e54SBarry Smith     CHKPTRQ(send_status);
2291eb62cbbSBarry Smith     MPI_Waitall(aij->nsends,aij->send_waits,send_status);
230*0452661fSBarry Smith     PetscFree(send_status);
2311eb62cbbSBarry Smith   }
232*0452661fSBarry Smith   PetscFree(aij->send_waits); PetscFree(aij->svalues);
2331eb62cbbSBarry Smith 
23464119d58SLois Curfman McInnes   aij->insertmode = NOT_SET_VALUES;
23578b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr);
23678b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr);
2371eb62cbbSBarry Smith 
2382493cbb0SBarry Smith   /* determine if any processor has disassembled, if so we must
2392493cbb0SBarry Smith      also disassemble ourselfs, in order that we may reassemble. */
240416022c9SBarry Smith   MPI_Allreduce(&aij->assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);
2412493cbb0SBarry Smith   if (aij->assembled && !other_disassembled) {
2422493cbb0SBarry Smith     ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
2432493cbb0SBarry Smith   }
2442493cbb0SBarry Smith 
2455e42470aSBarry Smith   if (!aij->assembled && mode == FINAL_ASSEMBLY) {
24678b31e54SBarry Smith     ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr);
247d6dfbf8fSBarry Smith     aij->assembled = 1;
2485e42470aSBarry Smith   }
24978b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr);
25078b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr);
2515e42470aSBarry Smith 
2528a729477SBarry Smith   return 0;
2538a729477SBarry Smith }
2548a729477SBarry Smith 
2552ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A)
2561eb62cbbSBarry Smith {
25744a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data;
258dbd7a890SLois Curfman McInnes   int        ierr;
25978b31e54SBarry Smith   ierr = MatZeroEntries(l->A); CHKERRQ(ierr);
26078b31e54SBarry Smith   ierr = MatZeroEntries(l->B); CHKERRQ(ierr);
2611eb62cbbSBarry Smith   return 0;
2621eb62cbbSBarry Smith }
2631eb62cbbSBarry Smith 
2641eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the
2651eb62cbbSBarry Smith    matrix is square and the column and row owerships are identical.
2661eb62cbbSBarry Smith    This is a BUG. The only way to fix it seems to be to access
2671eb62cbbSBarry Smith    aij->A and aij->B directly and not through the MatZeroRows()
2681eb62cbbSBarry Smith    routine.
2691eb62cbbSBarry Smith */
27044a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag)
2711eb62cbbSBarry Smith {
27244a69424SLois Curfman McInnes   Mat_MPIAIJ     *l = (Mat_MPIAIJ *) A->data;
27317699dbbSLois Curfman McInnes   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
2746abc6512SBarry Smith   int            *procs,*nprocs,j,found,idx,nsends,*work;
27517699dbbSLois Curfman McInnes   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
2765392566eSBarry Smith   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
277d6dfbf8fSBarry Smith   int            *lens,imdex,*lrows,*values;
278d6dfbf8fSBarry Smith   MPI_Comm       comm = A->comm;
2791eb62cbbSBarry Smith   MPI_Request    *send_waits,*recv_waits;
2801eb62cbbSBarry Smith   MPI_Status     recv_status,*send_status;
2811eb62cbbSBarry Smith   IS             istmp;
2821eb62cbbSBarry Smith 
28348d91487SBarry Smith   if (!l->assembled) SETERRQ(1,"MatZeroRows_MPIAIJ:Must assemble matrix");
28478b31e54SBarry Smith   ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr);
28578b31e54SBarry Smith   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
2861eb62cbbSBarry Smith 
2871eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
288*0452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
289cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
290*0452661fSBarry Smith   owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
2911eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
2921eb62cbbSBarry Smith     idx = rows[i];
2931eb62cbbSBarry Smith     found = 0;
29417699dbbSLois Curfman McInnes     for ( j=0; j<size; j++ ) {
2951eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
2961eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
2971eb62cbbSBarry Smith       }
2981eb62cbbSBarry Smith     }
299bbb6d6a8SBarry Smith     if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range");
3001eb62cbbSBarry Smith   }
30117699dbbSLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
3021eb62cbbSBarry Smith 
3031eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
304*0452661fSBarry Smith   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
30517699dbbSLois Curfman McInnes   MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);
30617699dbbSLois Curfman McInnes   nrecvs = work[rank];
30717699dbbSLois Curfman McInnes   MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);
30817699dbbSLois Curfman McInnes   nmax = work[rank];
309*0452661fSBarry Smith   PetscFree(work);
3101eb62cbbSBarry Smith 
3111eb62cbbSBarry Smith   /* post receives:   */
312*0452661fSBarry Smith   rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */
31378b31e54SBarry Smith   CHKPTRQ(rvalues);
314*0452661fSBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));
31578b31e54SBarry Smith   CHKPTRQ(recv_waits);
3161eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
317416022c9SBarry Smith     MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);
3181eb62cbbSBarry Smith   }
3191eb62cbbSBarry Smith 
3201eb62cbbSBarry Smith   /* do sends:
3211eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
3221eb62cbbSBarry Smith          the ith processor
3231eb62cbbSBarry Smith   */
324*0452661fSBarry Smith   svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
325*0452661fSBarry Smith   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));
32678b31e54SBarry Smith   CHKPTRQ(send_waits);
327*0452661fSBarry Smith   starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts);
3281eb62cbbSBarry Smith   starts[0] = 0;
32917699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3301eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
3311eb62cbbSBarry Smith     svalues[starts[owner[i]]++] = rows[i];
3321eb62cbbSBarry Smith   }
3331eb62cbbSBarry Smith   ISRestoreIndices(is,&rows);
3341eb62cbbSBarry Smith 
3351eb62cbbSBarry Smith   starts[0] = 0;
33617699dbbSLois Curfman McInnes   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3371eb62cbbSBarry Smith   count = 0;
33817699dbbSLois Curfman McInnes   for ( i=0; i<size; i++ ) {
3391eb62cbbSBarry Smith     if (procs[i]) {
340416022c9SBarry Smith       MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);
3411eb62cbbSBarry Smith     }
3421eb62cbbSBarry Smith   }
343*0452661fSBarry Smith   PetscFree(starts);
3441eb62cbbSBarry Smith 
34517699dbbSLois Curfman McInnes   base = owners[rank];
3461eb62cbbSBarry Smith 
3471eb62cbbSBarry Smith   /*  wait on receives */
348*0452661fSBarry Smith   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
3491eb62cbbSBarry Smith   source = lens + nrecvs;
3501eb62cbbSBarry Smith   count  = nrecvs; slen = 0;
3511eb62cbbSBarry Smith   while (count) {
352d6dfbf8fSBarry Smith     MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);
3531eb62cbbSBarry Smith     /* unpack receives into our local space */
3541eb62cbbSBarry Smith     MPI_Get_count(&recv_status,MPI_INT,&n);
355d6dfbf8fSBarry Smith     source[imdex]  = recv_status.MPI_SOURCE;
356d6dfbf8fSBarry Smith     lens[imdex]  = n;
3571eb62cbbSBarry Smith     slen += n;
3581eb62cbbSBarry Smith     count--;
3591eb62cbbSBarry Smith   }
360*0452661fSBarry Smith   PetscFree(recv_waits);
3611eb62cbbSBarry Smith 
3621eb62cbbSBarry Smith   /* move the data into the send scatter */
363*0452661fSBarry Smith   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
3641eb62cbbSBarry Smith   count = 0;
3651eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
3661eb62cbbSBarry Smith     values = rvalues + i*nmax;
3671eb62cbbSBarry Smith     for ( j=0; j<lens[i]; j++ ) {
3681eb62cbbSBarry Smith       lrows[count++] = values[j] - base;
3691eb62cbbSBarry Smith     }
3701eb62cbbSBarry Smith   }
371*0452661fSBarry Smith   PetscFree(rvalues); PetscFree(lens);
372*0452661fSBarry Smith   PetscFree(owner); PetscFree(nprocs);
3731eb62cbbSBarry Smith 
3741eb62cbbSBarry Smith   /* actually zap the local rows */
375416022c9SBarry Smith   ierr = ISCreateSeq(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
376464493b3SBarry Smith   PLogObjectParent(A,istmp);
377*0452661fSBarry Smith   PetscFree(lrows);
37878b31e54SBarry Smith   ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr);
37978b31e54SBarry Smith   ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr);
38078b31e54SBarry Smith   ierr = ISDestroy(istmp); CHKERRQ(ierr);
3811eb62cbbSBarry Smith 
3821eb62cbbSBarry Smith   /* wait on sends */
3831eb62cbbSBarry Smith   if (nsends) {
384*0452661fSBarry Smith     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));
38578b31e54SBarry Smith     CHKPTRQ(send_status);
3861eb62cbbSBarry Smith     MPI_Waitall(nsends,send_waits,send_status);
387*0452661fSBarry Smith     PetscFree(send_status);
3881eb62cbbSBarry Smith   }
389*0452661fSBarry Smith   PetscFree(send_waits); PetscFree(svalues);
3901eb62cbbSBarry Smith 
3911eb62cbbSBarry Smith   return 0;
3921eb62cbbSBarry Smith }
3931eb62cbbSBarry Smith 
394416022c9SBarry Smith static int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy)
3951eb62cbbSBarry Smith {
396416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
3971eb62cbbSBarry Smith   int        ierr;
398416022c9SBarry Smith 
39948d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix");
40064119d58SLois Curfman McInnes   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
401416022c9SBarry Smith   ierr = MatMult(a->A,xx,yy); CHKERRQ(ierr);
40264119d58SLois Curfman McInnes   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
403416022c9SBarry Smith   ierr = MatMultAdd(a->B,a->lvec,yy,yy); CHKERRQ(ierr);
4041eb62cbbSBarry Smith   return 0;
4051eb62cbbSBarry Smith }
4061eb62cbbSBarry Smith 
407416022c9SBarry Smith static int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
408da3a660dSBarry Smith {
409416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
410da3a660dSBarry Smith   int        ierr;
41148d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix");
41264119d58SLois Curfman McInnes   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
413416022c9SBarry Smith   ierr = MatMultAdd(a->A,xx,yy,zz); CHKERRQ(ierr);
41464119d58SLois Curfman McInnes   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
415416022c9SBarry Smith   ierr = MatMultAdd(a->B,a->lvec,zz,zz); CHKERRQ(ierr);
416da3a660dSBarry Smith   return 0;
417da3a660dSBarry Smith }
418da3a660dSBarry Smith 
419416022c9SBarry Smith static int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy)
420da3a660dSBarry Smith {
421416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
422da3a660dSBarry Smith   int        ierr;
423da3a660dSBarry Smith 
42448d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMulTrans_MPIAIJ:must assemble matrix");
425da3a660dSBarry Smith   /* do nondiagonal part */
426416022c9SBarry Smith   ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr);
427da3a660dSBarry Smith   /* send it on its way */
428416022c9SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,
42964119d58SLois Curfman McInnes                 (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
430da3a660dSBarry Smith   /* do local part */
431416022c9SBarry Smith   ierr = MatMultTrans(a->A,xx,yy); CHKERRQ(ierr);
432da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
433da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
434da3a660dSBarry Smith   /* but is not perhaps always true. */
435416022c9SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,
43664119d58SLois Curfman McInnes                   (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
437da3a660dSBarry Smith   return 0;
438da3a660dSBarry Smith }
439da3a660dSBarry Smith 
440416022c9SBarry Smith static int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
441da3a660dSBarry Smith {
442416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
443da3a660dSBarry Smith   int        ierr;
444da3a660dSBarry Smith 
44548d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMulTransAdd_MPIAIJ:must assemble matrix");
446da3a660dSBarry Smith   /* do nondiagonal part */
447416022c9SBarry Smith   ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr);
448da3a660dSBarry Smith   /* send it on its way */
449416022c9SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,
45064119d58SLois Curfman McInnes                  (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
451da3a660dSBarry Smith   /* do local part */
452416022c9SBarry Smith   ierr = MatMultTransAdd(a->A,xx,yy,zz); CHKERRQ(ierr);
453da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
454da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
455da3a660dSBarry Smith   /* but is not perhaps always true. */
456416022c9SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,
45764119d58SLois Curfman McInnes                   (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
458da3a660dSBarry Smith   return 0;
459da3a660dSBarry Smith }
460da3a660dSBarry Smith 
4611eb62cbbSBarry Smith /*
4621eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
4631eb62cbbSBarry Smith    diagonal block
4641eb62cbbSBarry Smith */
465416022c9SBarry Smith static int MatGetDiagonal_MPIAIJ(Mat A,Vec v)
4661eb62cbbSBarry Smith {
467416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
46848d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatGetDiag_MPIAIJ:must assemble matrix");
469416022c9SBarry Smith   return MatGetDiagonal(a->A,v);
4701eb62cbbSBarry Smith }
4711eb62cbbSBarry Smith 
47244a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj)
4731eb62cbbSBarry Smith {
4741eb62cbbSBarry Smith   Mat        mat = (Mat) obj;
47544a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
4761eb62cbbSBarry Smith   int        ierr;
477a5a9c739SBarry Smith #if defined(PETSC_LOG)
4786e35fa57SLois Curfman McInnes   PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N);
479a5a9c739SBarry Smith #endif
480*0452661fSBarry Smith   PetscFree(aij->rowners);
48178b31e54SBarry Smith   ierr = MatDestroy(aij->A); CHKERRQ(ierr);
48278b31e54SBarry Smith   ierr = MatDestroy(aij->B); CHKERRQ(ierr);
483*0452661fSBarry Smith   if (aij->colmap) PetscFree(aij->colmap);
484*0452661fSBarry Smith   if (aij->garray) PetscFree(aij->garray);
4851eb62cbbSBarry Smith   if (aij->lvec)   VecDestroy(aij->lvec);
486a56f8943SBarry Smith   if (aij->Mvctx)  VecScatterDestroy(aij->Mvctx);
487*0452661fSBarry Smith   PetscFree(aij);
488a5a9c739SBarry Smith   PLogObjectDestroy(mat);
489*0452661fSBarry Smith   PetscHeaderDestroy(mat);
4901eb62cbbSBarry Smith   return 0;
4911eb62cbbSBarry Smith }
4927857610eSBarry Smith #include "draw.h"
493b16a3bb1SBarry Smith #include "pinclude/pviewer.h"
494ee50ffe9SBarry Smith 
495416022c9SBarry Smith static int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer)
4961eb62cbbSBarry Smith {
497416022c9SBarry Smith   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
498416022c9SBarry Smith   int         ierr;
499416022c9SBarry Smith 
50017699dbbSLois Curfman McInnes   if (aij->size == 1) {
501416022c9SBarry Smith     ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
502416022c9SBarry Smith   }
503a523beb4SLois Curfman McInnes   else SETERRQ(1,"MatView_MPIAIJ_Binary:Only uniprocessor output supported");
504416022c9SBarry Smith   return 0;
505416022c9SBarry Smith }
506416022c9SBarry Smith 
507416022c9SBarry Smith static int MatView_MPIAIJ_ASCIIorDraw(Mat mat,Viewer viewer)
508416022c9SBarry Smith {
50944a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
510dbb450caSBarry Smith   Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data;
511a56f8943SBarry Smith   int         ierr, format,shift = C->indexshift,rank;
512d13ab20cSBarry Smith   PetscObject vobj = (PetscObject) viewer;
513d636dbe3SBarry Smith   FILE        *fd;
514416022c9SBarry Smith 
515416022c9SBarry Smith   if (vobj->type == ASCII_FILE_VIEWER || vobj->type == ASCII_FILES_VIEWER) {
516416022c9SBarry Smith     ierr = ViewerFileGetFormat_Private(viewer,&format);
51708480c60SBarry Smith     if (format == FILE_FORMAT_INFO_DETAILED) {
518a56f8943SBarry Smith       int nz,nzalloc,mem;
519a56f8943SBarry Smith       MPI_Comm_rank(mat->comm,&rank);
520a56f8943SBarry Smith       ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr);
521a56f8943SBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&nz,&nzalloc,&mem);
522a56f8943SBarry Smith       MPIU_Seq_begin(mat->comm,1);
523a56f8943SBarry Smith       fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d \n",rank,aij->m,nz,
524a56f8943SBarry Smith                 nzalloc,mem);
52508480c60SBarry Smith       ierr = MatGetInfo(aij->A,MAT_LOCAL,&nz,&nzalloc,&mem);
52608480c60SBarry Smith       fprintf(fd,"[%d] on diagonal nz %d \n",rank,nz);
52708480c60SBarry Smith       ierr = MatGetInfo(aij->B,MAT_LOCAL,&nz,&nzalloc,&mem);
52808480c60SBarry Smith       fprintf(fd,"[%d] off diagonal nz %d \n",rank,nz);
529a56f8943SBarry Smith       fflush(fd);
530a56f8943SBarry Smith       MPIU_Seq_end(mat->comm,1);
531a56f8943SBarry Smith       ierr = VecScatterView(aij->Mvctx,viewer);
532416022c9SBarry Smith       return 0;
533416022c9SBarry Smith     }
53408480c60SBarry Smith     else if (format == FILE_FORMAT_INFO) {
53508480c60SBarry Smith       return 0;
53608480c60SBarry Smith     }
537416022c9SBarry Smith   }
538416022c9SBarry Smith 
539416022c9SBarry Smith   if (vobj->type == ASCII_FILE_VIEWER) {
540d636dbe3SBarry Smith     ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr);
5417f813858SBarry Smith     MPIU_Seq_begin(mat->comm,1);
542d13ab20cSBarry Smith     fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n",
54317699dbbSLois Curfman McInnes            aij->rank,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart,
5441eb62cbbSBarry Smith            aij->cend);
54578b31e54SBarry Smith     ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
54678b31e54SBarry Smith     ierr = MatView(aij->B,viewer); CHKERRQ(ierr);
547d13ab20cSBarry Smith     fflush(fd);
5487f813858SBarry Smith     MPIU_Seq_end(mat->comm,1);
549d13ab20cSBarry Smith   }
550416022c9SBarry Smith   else {
551a56f8943SBarry Smith     int size = aij->size;
552a56f8943SBarry Smith     rank = aij->rank;
55317699dbbSLois Curfman McInnes     if (size == 1) {
55478b31e54SBarry Smith       ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
55595373324SBarry Smith     }
55695373324SBarry Smith     else {
55795373324SBarry Smith       /* assemble the entire matrix onto first processor. */
55895373324SBarry Smith       Mat         A;
559ec8511deSBarry Smith       Mat_SeqAIJ *Aloc;
5602eb8c8abSBarry Smith       int         M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct;
56195373324SBarry Smith       Scalar      *a;
5622ee70a88SLois Curfman McInnes 
56317699dbbSLois Curfman McInnes       if (!rank) {
564416022c9SBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,0,0,0,&A);CHKERRQ(ierr);
56595373324SBarry Smith       }
56695373324SBarry Smith       else {
567416022c9SBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,0,0,0,&A);CHKERRQ(ierr);
56895373324SBarry Smith       }
569464493b3SBarry Smith       PLogObjectParent(mat,A);
570416022c9SBarry Smith 
57195373324SBarry Smith 
57295373324SBarry Smith       /* copy over the A part */
573ec8511deSBarry Smith       Aloc = (Mat_SeqAIJ*) aij->A->data;
5742ee70a88SLois Curfman McInnes       m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
57595373324SBarry Smith       row = aij->rstart;
576dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;}
57795373324SBarry Smith       for ( i=0; i<m; i++ ) {
578416022c9SBarry Smith         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr);
57995373324SBarry Smith         row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
58095373324SBarry Smith       }
5812ee70a88SLois Curfman McInnes       aj = Aloc->j;
582dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;}
58395373324SBarry Smith 
58495373324SBarry Smith       /* copy over the B part */
585ec8511deSBarry Smith       Aloc = (Mat_SeqAIJ*) aij->B->data;
5862ee70a88SLois Curfman McInnes       m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
58795373324SBarry Smith       row = aij->rstart;
588*0452661fSBarry Smith       ct = cols = (int *) PetscMalloc( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols);
589dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];}
59095373324SBarry Smith       for ( i=0; i<m; i++ ) {
591416022c9SBarry Smith         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr);
59295373324SBarry Smith         row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
59395373324SBarry Smith       }
594*0452661fSBarry Smith       PetscFree(ct);
59578b31e54SBarry Smith       ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
59678b31e54SBarry Smith       ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
59717699dbbSLois Curfman McInnes       if (!rank) {
59878b31e54SBarry Smith         ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr);
59995373324SBarry Smith       }
60078b31e54SBarry Smith       ierr = MatDestroy(A); CHKERRQ(ierr);
60195373324SBarry Smith     }
60295373324SBarry Smith   }
6031eb62cbbSBarry Smith   return 0;
6041eb62cbbSBarry Smith }
6051eb62cbbSBarry Smith 
606416022c9SBarry Smith static int MatView_MPIAIJ(PetscObject obj,Viewer viewer)
607416022c9SBarry Smith {
608416022c9SBarry Smith   Mat         mat = (Mat) obj;
609416022c9SBarry Smith   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
610416022c9SBarry Smith   int         ierr;
611416022c9SBarry Smith   PetscObject vobj = (PetscObject) viewer;
612416022c9SBarry Smith 
61348d91487SBarry Smith   if (!aij->assembled) SETERRQ(1,"MatView_MPIAIJ:must assemble matrix");
614416022c9SBarry Smith   if (!viewer) {
615416022c9SBarry Smith     viewer = STDOUT_VIEWER_SELF; vobj = (PetscObject) viewer;
616416022c9SBarry Smith   }
617416022c9SBarry Smith   if (vobj->cookie == DRAW_COOKIE && vobj->type == NULLWINDOW) return 0;
618416022c9SBarry Smith   else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILE_VIEWER) {
619416022c9SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr);
620416022c9SBarry Smith   }
621416022c9SBarry Smith   else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILES_VIEWER) {
622416022c9SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr);
623416022c9SBarry Smith   }
624416022c9SBarry Smith   else if (vobj->cookie == DRAW_COOKIE) {
625416022c9SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr);
626416022c9SBarry Smith   }
627416022c9SBarry Smith   else if (vobj->type == BINARY_FILE_VIEWER) {
628416022c9SBarry Smith     return MatView_MPIAIJ_Binary(mat,viewer);
629416022c9SBarry Smith   }
630416022c9SBarry Smith   return 0;
631416022c9SBarry Smith }
632416022c9SBarry Smith 
633ec8511deSBarry Smith extern int MatMarkDiag_SeqAIJ(Mat);
6341eb62cbbSBarry Smith /*
6351eb62cbbSBarry Smith     This has to provide several versions.
6361eb62cbbSBarry Smith 
6371eb62cbbSBarry Smith      1) per sequential
6381eb62cbbSBarry Smith      2) a) use only local smoothing updating outer values only once.
6391eb62cbbSBarry Smith         b) local smoothing updating outer values each inner iteration
640d6dfbf8fSBarry Smith      3) color updating out values betwen colors.
6411eb62cbbSBarry Smith */
642fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag,
643dbb450caSBarry Smith                            double fshift,int its,Vec xx)
6448a729477SBarry Smith {
64544a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
646d6dfbf8fSBarry Smith   Mat        AA = mat->A, BB = mat->B;
647ec8511deSBarry Smith   Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data;
6486abc6512SBarry Smith   Scalar     zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts;
6496abc6512SBarry Smith   int        ierr,*idx, *diag;
650416022c9SBarry Smith   int        n = mat->n, m = mat->m, i,shift = A->indexshift;
651da3a660dSBarry Smith   Vec        tt;
6528a729477SBarry Smith 
65348d91487SBarry Smith   if (!mat->assembled) SETERRQ(1,"MatRelax_MPIAIJ:must assemble matrix");
6541eb62cbbSBarry Smith 
655d6dfbf8fSBarry Smith   VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls);
656dbb450caSBarry Smith   xs = x + shift; /* shift by one for index start of 1 */
657dbb450caSBarry Smith   ls = ls + shift;
658ec8511deSBarry Smith   if (!A->diag) {if ((ierr = MatMarkDiag_SeqAIJ(AA))) return ierr;}
659d6dfbf8fSBarry Smith   diag = A->diag;
660acb40c82SBarry Smith   if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) {
66148d91487SBarry Smith     SETERRQ(1,"MatRelax_MPIAIJ:Option not supported");
662acb40c82SBarry Smith   }
663da3a660dSBarry Smith   if (flag & SOR_EISENSTAT) {
664da3a660dSBarry Smith     /* Let  A = L + U + D; where L is lower trianglar,
665da3a660dSBarry Smith     U is upper triangular, E is diagonal; This routine applies
666da3a660dSBarry Smith 
667da3a660dSBarry Smith             (L + E)^{-1} A (U + E)^{-1}
668da3a660dSBarry Smith 
669da3a660dSBarry Smith     to a vector efficiently using Eisenstat's trick. This is for
670da3a660dSBarry Smith     the case of SSOR preconditioner, so E is D/omega where omega
671da3a660dSBarry Smith     is the relaxation factor.
672da3a660dSBarry Smith     */
67378b31e54SBarry Smith     ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr);
674464493b3SBarry Smith     PLogObjectParent(matin,tt);
675da3a660dSBarry Smith     VecGetArray(tt,&t);
676da3a660dSBarry Smith     scale = (2.0/omega) - 1.0;
677da3a660dSBarry Smith     /*  x = (E + U)^{-1} b */
678da3a660dSBarry Smith     VecSet(&zero,mat->lvec);
67964119d58SLois Curfman McInnes     ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
68078b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
681da3a660dSBarry Smith     for ( i=m-1; i>-1; i-- ) {
682da3a660dSBarry Smith       n    = A->i[i+1] - diag[i] - 1;
683dbb450caSBarry Smith       idx  = A->j + diag[i] + !shift;
684dbb450caSBarry Smith       v    = A->a + diag[i] + !shift;
685da3a660dSBarry Smith       sum  = b[i];
686da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,xs,v,idx,n);
687dbb450caSBarry Smith       d    = fshift + A->a[diag[i]+shift];
688da3a660dSBarry Smith       n    = B->i[i+1] - B->i[i];
689dbb450caSBarry Smith       idx  = B->j + B->i[i] + shift;
690dbb450caSBarry Smith       v    = B->a + B->i[i] + shift;
691da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ls,v,idx,n);
692da3a660dSBarry Smith       x[i] = omega*(sum/d);
693da3a660dSBarry Smith     }
69464119d58SLois Curfman McInnes     ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
69578b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
696da3a660dSBarry Smith 
697da3a660dSBarry Smith     /*  t = b - (2*E - D)x */
698da3a660dSBarry Smith     v = A->a;
699dbb450caSBarry Smith     for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ + shift])*x[i]; }
700da3a660dSBarry Smith 
701da3a660dSBarry Smith     /*  t = (E + L)^{-1}t */
702dbb450caSBarry Smith     ts = t + shift; /* shifted by one for index start of a or mat->j*/
703da3a660dSBarry Smith     diag = A->diag;
704da3a660dSBarry Smith     VecSet(&zero,mat->lvec);
70564119d58SLois Curfman McInnes     ierr = VecPipelineBegin(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
70678b31e54SBarry Smith                                                  mat->Mvctx); CHKERRQ(ierr);
707da3a660dSBarry Smith     for ( i=0; i<m; i++ ) {
708da3a660dSBarry Smith       n    = diag[i] - A->i[i];
709dbb450caSBarry Smith       idx  = A->j + A->i[i] + shift;
710dbb450caSBarry Smith       v    = A->a + A->i[i] + shift;
711da3a660dSBarry Smith       sum  = t[i];
712da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ts,v,idx,n);
713dbb450caSBarry Smith       d    = fshift + A->a[diag[i]+shift];
714da3a660dSBarry Smith       n    = B->i[i+1] - B->i[i];
715dbb450caSBarry Smith       idx  = B->j + B->i[i] + shift;
716dbb450caSBarry Smith       v    = B->a + B->i[i] + shift;
717da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ls,v,idx,n);
718da3a660dSBarry Smith       t[i] = omega*(sum/d);
719da3a660dSBarry Smith     }
72064119d58SLois Curfman McInnes     ierr = VecPipelineEnd(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
72178b31e54SBarry Smith                                                     mat->Mvctx); CHKERRQ(ierr);
722da3a660dSBarry Smith     /*  x = x + t */
723da3a660dSBarry Smith     for ( i=0; i<m; i++ ) { x[i] += t[i]; }
724da3a660dSBarry Smith     VecDestroy(tt);
725da3a660dSBarry Smith     return 0;
726da3a660dSBarry Smith   }
727da3a660dSBarry Smith 
7281eb62cbbSBarry Smith 
729d6dfbf8fSBarry Smith   if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){
730da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
731da3a660dSBarry Smith       VecSet(&zero,mat->lvec); VecSet(&zero,xx);
732da3a660dSBarry Smith     }
733da3a660dSBarry Smith     else {
73464119d58SLois Curfman McInnes       ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
73578b31e54SBarry Smith       CHKERRQ(ierr);
73664119d58SLois Curfman McInnes       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
73778b31e54SBarry Smith       CHKERRQ(ierr);
738da3a660dSBarry Smith     }
739d6dfbf8fSBarry Smith     while (its--) {
740d6dfbf8fSBarry Smith       /* go down through the rows */
74164119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
74278b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
743d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
744d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
745dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
746dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
747d6dfbf8fSBarry Smith         sum  = b[i];
748d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
749dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
750d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
751dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
752dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
753d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
754d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
755d6dfbf8fSBarry Smith       }
75664119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
75778b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
758d6dfbf8fSBarry Smith       /* come up through the rows */
75964119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
76078b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
761d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
762d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
763dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
764dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
765d6dfbf8fSBarry Smith         sum  = b[i];
766d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
767dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
768d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
769dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
770dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
771d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
772d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
773d6dfbf8fSBarry Smith       }
77464119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
77578b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
776d6dfbf8fSBarry Smith     }
777d6dfbf8fSBarry Smith   }
778d6dfbf8fSBarry Smith   else if (flag & SOR_FORWARD_SWEEP){
779da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
780da3a660dSBarry Smith       VecSet(&zero,mat->lvec);
78164119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
78278b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
783da3a660dSBarry Smith       for ( i=0; i<m; i++ ) {
784da3a660dSBarry Smith         n    = diag[i] - A->i[i];
785dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
786dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
787da3a660dSBarry Smith         sum  = b[i];
788da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
789dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
790da3a660dSBarry Smith         n    = B->i[i+1] - B->i[i];
791dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
792dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
793da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
794da3a660dSBarry Smith         x[i] = omega*(sum/d);
795da3a660dSBarry Smith       }
79664119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
79778b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
798da3a660dSBarry Smith       its--;
799da3a660dSBarry Smith     }
800d6dfbf8fSBarry Smith     while (its--) {
80164119d58SLois Curfman McInnes       ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
80278b31e54SBarry Smith       CHKERRQ(ierr);
80364119d58SLois Curfman McInnes       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
80478b31e54SBarry Smith       CHKERRQ(ierr);
80564119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
80678b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
807d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
808d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
809dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
810dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
811d6dfbf8fSBarry Smith         sum  = b[i];
812d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
813dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
814d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
815dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
816dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
817d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
818d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
819d6dfbf8fSBarry Smith       }
82064119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
82178b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
822d6dfbf8fSBarry Smith     }
823d6dfbf8fSBarry Smith   }
824d6dfbf8fSBarry Smith   else if (flag & SOR_BACKWARD_SWEEP){
825da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
826da3a660dSBarry Smith       VecSet(&zero,mat->lvec);
82764119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
82878b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
829da3a660dSBarry Smith       for ( i=m-1; i>-1; i-- ) {
830da3a660dSBarry Smith         n    = A->i[i+1] - diag[i] - 1;
831dbb450caSBarry Smith         idx  = A->j + diag[i] + !shift;
832dbb450caSBarry Smith         v    = A->a + diag[i] + !shift;
833da3a660dSBarry Smith         sum  = b[i];
834da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
835dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
836da3a660dSBarry Smith         n    = B->i[i+1] - B->i[i];
837dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
838dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
839da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
840da3a660dSBarry Smith         x[i] = omega*(sum/d);
841da3a660dSBarry Smith       }
84264119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
84378b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
844da3a660dSBarry Smith       its--;
845da3a660dSBarry Smith     }
846d6dfbf8fSBarry Smith     while (its--) {
84764119d58SLois Curfman McInnes       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN,
84878b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
84964119d58SLois Curfman McInnes       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN,
85078b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
85164119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
85278b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
853d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
854d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
855dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
856dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
857d6dfbf8fSBarry Smith         sum  = b[i];
858d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
859dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
860d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
861dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
862dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
863d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
864d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
865d6dfbf8fSBarry Smith       }
86664119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
86778b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
868d6dfbf8fSBarry Smith     }
869d6dfbf8fSBarry Smith   }
870d6dfbf8fSBarry Smith   else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
871da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
872dbb450caSBarry Smith       return MatRelax(mat->A,bb,omega,flag,fshift,its,xx);
873da3a660dSBarry Smith     }
87464119d58SLois Curfman McInnes     ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
87578b31e54SBarry Smith     CHKERRQ(ierr);
87664119d58SLois Curfman McInnes     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
87778b31e54SBarry Smith     CHKERRQ(ierr);
878d6dfbf8fSBarry Smith     while (its--) {
879d6dfbf8fSBarry Smith       /* go down through the rows */
880d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
881d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
882dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
883dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
884d6dfbf8fSBarry Smith         sum  = b[i];
885d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
886dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
887d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
888dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
889dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
890d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
891d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
892d6dfbf8fSBarry Smith       }
893d6dfbf8fSBarry Smith       /* come up through the rows */
894d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
895d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
896dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
897dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
898d6dfbf8fSBarry Smith         sum  = b[i];
899d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
900dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
901d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
902dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
903dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
904d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
905d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
906d6dfbf8fSBarry Smith       }
907d6dfbf8fSBarry Smith     }
908d6dfbf8fSBarry Smith   }
909d6dfbf8fSBarry Smith   else if (flag & SOR_LOCAL_FORWARD_SWEEP){
910da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
911dbb450caSBarry Smith       return MatRelax(mat->A,bb,omega,flag,fshift,its,xx);
912da3a660dSBarry Smith     }
91364119d58SLois Curfman McInnes     ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
91478b31e54SBarry Smith     CHKERRQ(ierr);
91564119d58SLois Curfman McInnes     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
91678b31e54SBarry Smith     CHKERRQ(ierr);
917d6dfbf8fSBarry Smith     while (its--) {
918d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
919d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
920dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
921dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
922d6dfbf8fSBarry Smith         sum  = b[i];
923d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
924dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
925d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
926dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
927dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
928d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
929d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
930d6dfbf8fSBarry Smith       }
931d6dfbf8fSBarry Smith     }
932d6dfbf8fSBarry Smith   }
933d6dfbf8fSBarry Smith   else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
934da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
935dbb450caSBarry Smith       return MatRelax(mat->A,bb,omega,flag,fshift,its,xx);
936da3a660dSBarry Smith     }
93764119d58SLois Curfman McInnes     ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,
93878b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
93964119d58SLois Curfman McInnes     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,
94078b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
941d6dfbf8fSBarry Smith     while (its--) {
942d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
943d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
944dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
945dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
946d6dfbf8fSBarry Smith         sum  = b[i];
947d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
948dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
949d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
950dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
951dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
952d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
953d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
954d6dfbf8fSBarry Smith       }
955d6dfbf8fSBarry Smith     }
956d6dfbf8fSBarry Smith   }
9578a729477SBarry Smith   return 0;
9588a729477SBarry Smith }
959a66be287SLois Curfman McInnes 
960fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz,
961fc76ce87SLois Curfman McInnes                              int *nzalloc,int *mem)
962a66be287SLois Curfman McInnes {
963a66be287SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
964a66be287SLois Curfman McInnes   Mat        A = mat->A, B = mat->B;
965a66be287SLois Curfman McInnes   int        ierr, isend[3], irecv[3], nzA, nzallocA, memA;
966a66be287SLois Curfman McInnes 
96778b31e54SBarry Smith   ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr);
96878b31e54SBarry Smith   ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr);
969a66be287SLois Curfman McInnes   isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA;
970a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
971a66be287SLois Curfman McInnes     *nz = isend[0]; *nzalloc = isend[1]; *mem = isend[2];
972a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
973d65a2f8fSBarry Smith     MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_MAX,matin->comm);
974a66be287SLois Curfman McInnes     *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2];
975a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
976d65a2f8fSBarry Smith     MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_SUM,matin->comm);
977a66be287SLois Curfman McInnes     *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2];
978a66be287SLois Curfman McInnes   }
979a66be287SLois Curfman McInnes   return 0;
980a66be287SLois Curfman McInnes }
981a66be287SLois Curfman McInnes 
982299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*);
983299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*);
984299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double);
985299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *);
986299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec);
987299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec);
988299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec);
989299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec);
990299609e3SLois Curfman McInnes 
991416022c9SBarry Smith static int MatSetOption_MPIAIJ(Mat A,MatOption op)
992c74985f6SBarry Smith {
993c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
994c74985f6SBarry Smith 
995c0bbcb79SLois Curfman McInnes   if (op == NO_NEW_NONZERO_LOCATIONS ||
996c0bbcb79SLois Curfman McInnes       op == YES_NEW_NONZERO_LOCATIONS ||
997c0bbcb79SLois Curfman McInnes       op == COLUMNS_SORTED ||
998c0bbcb79SLois Curfman McInnes       op == ROW_ORIENTED) {
999c0bbcb79SLois Curfman McInnes         MatSetOption(a->A,op);
1000c0bbcb79SLois Curfman McInnes         MatSetOption(a->B,op);
1001c74985f6SBarry Smith   }
1002c0bbcb79SLois Curfman McInnes   else if (op == ROWS_SORTED ||
1003c0bbcb79SLois Curfman McInnes            op == SYMMETRIC_MATRIX ||
1004c0bbcb79SLois Curfman McInnes            op == STRUCTURALLY_SYMMETRIC_MATRIX ||
1005c0bbcb79SLois Curfman McInnes            op == YES_NEW_DIAGONALS)
1006c0bbcb79SLois Curfman McInnes     PLogInfo((PetscObject)A,"Info:MatSetOption_MPIAIJ:Option ignored\n");
1007bbb6d6a8SBarry Smith   else if (op == COLUMN_ORIENTED)
10084d39ef84SLois Curfman McInnes     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:COLUMN_ORIENTED");}
1009c0bbcb79SLois Curfman McInnes   else if (op == NO_NEW_DIAGONALS)
10104d39ef84SLois Curfman McInnes     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:NO_NEW_DIAGONALS");}
1011c0bbcb79SLois Curfman McInnes   else
10124d39ef84SLois Curfman McInnes     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:unknown option");}
1013c74985f6SBarry Smith   return 0;
1014c74985f6SBarry Smith }
1015c74985f6SBarry Smith 
1016d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n)
1017c74985f6SBarry Smith {
101844a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1019c74985f6SBarry Smith   *m = mat->M; *n = mat->N;
1020c74985f6SBarry Smith   return 0;
1021c74985f6SBarry Smith }
1022c74985f6SBarry Smith 
1023d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n)
1024c74985f6SBarry Smith {
102544a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1026b7c46309SBarry Smith   *m = mat->m; *n = mat->N;
1027c74985f6SBarry Smith   return 0;
1028c74985f6SBarry Smith }
1029c74985f6SBarry Smith 
1030d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n)
1031c74985f6SBarry Smith {
103244a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1033c74985f6SBarry Smith   *m = mat->rstart; *n = mat->rend;
1034c74985f6SBarry Smith   return 0;
1035c74985f6SBarry Smith }
1036c74985f6SBarry Smith 
103739e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v)
103839e00950SLois Curfman McInnes {
1039154123eaSLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1040154123eaSLois Curfman McInnes   Scalar     *vworkA, *vworkB, **pvA, **pvB;
1041154123eaSLois Curfman McInnes   int        i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart;
1042154123eaSLois Curfman McInnes   int        nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend;
104339e00950SLois Curfman McInnes 
1044416022c9SBarry Smith   if (row < rstart || row >= rend) SETERRQ(1,"MatGetRow_MPIAIJ:only local rows")
1045abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
104639e00950SLois Curfman McInnes 
1047154123eaSLois Curfman McInnes   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1048154123eaSLois Curfman McInnes   if (!v)   {pvA = 0; pvB = 0;}
1049154123eaSLois Curfman McInnes   if (!idx) {pcA = 0; if (!v) pcB = 0;}
105078b31e54SBarry Smith   ierr = MatGetRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
105178b31e54SBarry Smith   ierr = MatGetRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
1052154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1053154123eaSLois Curfman McInnes 
1054154123eaSLois Curfman McInnes   if (v  || idx) {
1055154123eaSLois Curfman McInnes     if (nztot) {
1056154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1057299609e3SLois Curfman McInnes       int imark;
105848b35521SBarry Smith       if (mat->assembled) {
1059154123eaSLois Curfman McInnes         for (i=0; i<nzB; i++) cworkB[i] = mat->garray[cworkB[i]];
106048b35521SBarry Smith       }
1061154123eaSLois Curfman McInnes       if (v) {
1062*0452661fSBarry Smith         *v = (Scalar *) PetscMalloc( (nztot)*sizeof(Scalar) ); CHKPTRQ(*v);
106339e00950SLois Curfman McInnes         for ( i=0; i<nzB; i++ ) {
1064154123eaSLois Curfman McInnes           if (cworkB[i] < cstart)   (*v)[i] = vworkB[i];
1065154123eaSLois Curfman McInnes           else break;
1066154123eaSLois Curfman McInnes         }
1067154123eaSLois Curfman McInnes         imark = i;
1068154123eaSLois Curfman McInnes         for ( i=0; i<nzA; i++ )     (*v)[imark+i] = vworkA[i];
1069299609e3SLois Curfman McInnes         for ( i=imark; i<nzB; i++ ) (*v)[nzA+i] = vworkB[i];
1070154123eaSLois Curfman McInnes       }
1071154123eaSLois Curfman McInnes       if (idx) {
1072*0452661fSBarry Smith         *idx = (int *) PetscMalloc( (nztot)*sizeof(int) ); CHKPTRQ(*idx);
1073154123eaSLois Curfman McInnes         for (i=0; i<nzA; i++) cworkA[i] += cstart;
1074154123eaSLois Curfman McInnes         for ( i=0; i<nzB; i++ ) {
1075154123eaSLois Curfman McInnes           if (cworkB[i] < cstart)   (*idx)[i] = cworkB[i];
1076154123eaSLois Curfman McInnes           else break;
1077154123eaSLois Curfman McInnes         }
1078154123eaSLois Curfman McInnes         imark = i;
1079154123eaSLois Curfman McInnes         for ( i=0; i<nzA; i++ )     (*idx)[imark+i] = cworkA[i];
1080299609e3SLois Curfman McInnes         for ( i=imark; i<nzB; i++ ) (*idx)[nzA+i] = cworkB[i];
108139e00950SLois Curfman McInnes       }
108239e00950SLois Curfman McInnes     }
108339e00950SLois Curfman McInnes     else {*idx = 0; *v=0;}
1084154123eaSLois Curfman McInnes   }
108539e00950SLois Curfman McInnes   *nz = nztot;
108678b31e54SBarry Smith   ierr = MatRestoreRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
108778b31e54SBarry Smith   ierr = MatRestoreRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
108839e00950SLois Curfman McInnes   return 0;
108939e00950SLois Curfman McInnes }
109039e00950SLois Curfman McInnes 
109139e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v)
109239e00950SLois Curfman McInnes {
1093*0452661fSBarry Smith   if (idx) PetscFree(*idx);
1094*0452661fSBarry Smith   if (v) PetscFree(*v);
109539e00950SLois Curfman McInnes   return 0;
109639e00950SLois Curfman McInnes }
109739e00950SLois Curfman McInnes 
1098cddf8d76SBarry Smith static int MatNorm_MPIAIJ(Mat mat,NormType type,double *norm)
1099855ac2c5SLois Curfman McInnes {
1100855ac2c5SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
1101ec8511deSBarry Smith   Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data;
1102416022c9SBarry Smith   int        ierr, i, j, cstart = aij->cstart,shift = amat->indexshift;
1103416022c9SBarry Smith   double     sum = 0.0;
110404ca555eSLois Curfman McInnes   Scalar     *v;
110504ca555eSLois Curfman McInnes 
1106416022c9SBarry Smith   if (!aij->assembled) SETERRQ(1,"MatNorm_MPIAIJ:Must assemble matrix");
110717699dbbSLois Curfman McInnes   if (aij->size == 1) {
110814183eadSLois Curfman McInnes     ierr =  MatNorm(aij->A,type,norm); CHKERRQ(ierr);
110937fa93a5SLois Curfman McInnes   } else {
111004ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
111104ca555eSLois Curfman McInnes       v = amat->a;
111204ca555eSLois Curfman McInnes       for (i=0; i<amat->nz; i++ ) {
111304ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
111404ca555eSLois Curfman McInnes         sum += real(conj(*v)*(*v)); v++;
111504ca555eSLois Curfman McInnes #else
111604ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
111704ca555eSLois Curfman McInnes #endif
111804ca555eSLois Curfman McInnes       }
111904ca555eSLois Curfman McInnes       v = bmat->a;
112004ca555eSLois Curfman McInnes       for (i=0; i<bmat->nz; i++ ) {
112104ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
112204ca555eSLois Curfman McInnes         sum += real(conj(*v)*(*v)); v++;
112304ca555eSLois Curfman McInnes #else
112404ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
112504ca555eSLois Curfman McInnes #endif
112604ca555eSLois Curfman McInnes       }
112704ca555eSLois Curfman McInnes       MPI_Allreduce((void*)&sum,(void*)norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);
112804ca555eSLois Curfman McInnes       *norm = sqrt(*norm);
112904ca555eSLois Curfman McInnes     }
113004ca555eSLois Curfman McInnes     else if (type == NORM_1) { /* max column norm */
113104ca555eSLois Curfman McInnes       double *tmp, *tmp2;
113204ca555eSLois Curfman McInnes       int    *jj, *garray = aij->garray;
1133*0452661fSBarry Smith       tmp  = (double *) PetscMalloc( aij->N*sizeof(double) ); CHKPTRQ(tmp);
1134*0452661fSBarry Smith       tmp2 = (double *) PetscMalloc( aij->N*sizeof(double) ); CHKPTRQ(tmp2);
1135cddf8d76SBarry Smith       PetscMemzero(tmp,aij->N*sizeof(double));
113604ca555eSLois Curfman McInnes       *norm = 0.0;
113704ca555eSLois Curfman McInnes       v = amat->a; jj = amat->j;
113804ca555eSLois Curfman McInnes       for ( j=0; j<amat->nz; j++ ) {
1139cddf8d76SBarry Smith         tmp[cstart + *jj++ + shift] += PetscAbsScalar(*v++);
114004ca555eSLois Curfman McInnes       }
114104ca555eSLois Curfman McInnes       v = bmat->a; jj = bmat->j;
114204ca555eSLois Curfman McInnes       for ( j=0; j<bmat->nz; j++ ) {
1143cddf8d76SBarry Smith         tmp[garray[*jj++ + shift]] += PetscAbsScalar(*v++);
114404ca555eSLois Curfman McInnes       }
114504ca555eSLois Curfman McInnes       MPI_Allreduce((void*)tmp,(void*)tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm);
114604ca555eSLois Curfman McInnes       for ( j=0; j<aij->N; j++ ) {
114704ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
114804ca555eSLois Curfman McInnes       }
1149*0452661fSBarry Smith       PetscFree(tmp); PetscFree(tmp2);
115004ca555eSLois Curfman McInnes     }
115104ca555eSLois Curfman McInnes     else if (type == NORM_INFINITY) { /* max row norm */
1152515d9167SLois Curfman McInnes       double ntemp = 0.0;
115304ca555eSLois Curfman McInnes       for ( j=0; j<amat->m; j++ ) {
1154dbb450caSBarry Smith         v = amat->a + amat->i[j] + shift;
115504ca555eSLois Curfman McInnes         sum = 0.0;
115604ca555eSLois Curfman McInnes         for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) {
1157cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
115804ca555eSLois Curfman McInnes         }
1159dbb450caSBarry Smith         v = bmat->a + bmat->i[j] + shift;
116004ca555eSLois Curfman McInnes         for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) {
1161cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
116204ca555eSLois Curfman McInnes         }
1163515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
116404ca555eSLois Curfman McInnes       }
1165515d9167SLois Curfman McInnes       MPI_Allreduce((void*)&ntemp,(void*)norm,1,MPI_DOUBLE,MPI_MAX,mat->comm);
116604ca555eSLois Curfman McInnes     }
116704ca555eSLois Curfman McInnes     else {
1168515d9167SLois Curfman McInnes       SETERRQ(1,"MatNorm_MPIAIJ:No support for two norm");
116904ca555eSLois Curfman McInnes     }
117037fa93a5SLois Curfman McInnes   }
1171855ac2c5SLois Curfman McInnes   return 0;
1172855ac2c5SLois Curfman McInnes }
1173855ac2c5SLois Curfman McInnes 
11740de55854SLois Curfman McInnes static int MatTranspose_MPIAIJ(Mat A,Mat *matout)
1175b7c46309SBarry Smith {
1176b7c46309SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
1177dbb450caSBarry Smith   Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data;
1178416022c9SBarry Smith   int        ierr,shift = Aloc->indexshift;
1179416022c9SBarry Smith   Mat        B;
1180b7c46309SBarry Smith   int        M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct;
1181b7c46309SBarry Smith   Scalar     *array;
1182b7c46309SBarry Smith 
1183416022c9SBarry Smith   if (!matout && M != N) SETERRQ(1,"MatTranspose_MPIAIJ:Square only in-place");
1184b7c46309SBarry Smith   ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,0,0,0,&B);
1185b7c46309SBarry Smith   CHKERRQ(ierr);
1186b7c46309SBarry Smith 
1187b7c46309SBarry Smith   /* copy over the A part */
1188ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*) a->A->data;
1189b7c46309SBarry Smith   m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1190b7c46309SBarry Smith   row = a->rstart;
1191dbb450caSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;}
1192b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1193416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1194b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
1195b7c46309SBarry Smith   }
1196b7c46309SBarry Smith   aj = Aloc->j;
1197dbb450caSBarry Smith   for ( i=0; i<ai[m]|+shift; i++ ) {aj[i] -= a->cstart + shift;}
1198b7c46309SBarry Smith 
1199b7c46309SBarry Smith   /* copy over the B part */
1200ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*) a->B->data;
1201b7c46309SBarry Smith   m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1202b7c46309SBarry Smith   row = a->rstart;
1203*0452661fSBarry Smith   ct = cols = (int *) PetscMalloc( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols);
1204dbb450caSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];}
1205b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1206416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1207b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
1208b7c46309SBarry Smith   }
1209*0452661fSBarry Smith   PetscFree(ct);
1210b7c46309SBarry Smith   ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr);
1211b7c46309SBarry Smith   ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr);
12120de55854SLois Curfman McInnes   if (matout) {
12130de55854SLois Curfman McInnes     *matout = B;
12140de55854SLois Curfman McInnes   } else {
12150de55854SLois Curfman McInnes     /* This isn't really an in-place transpose .... but free data structures from a */
1216*0452661fSBarry Smith     PetscFree(a->rowners);
12170de55854SLois Curfman McInnes     ierr = MatDestroy(a->A); CHKERRQ(ierr);
12180de55854SLois Curfman McInnes     ierr = MatDestroy(a->B); CHKERRQ(ierr);
1219*0452661fSBarry Smith     if (a->colmap) PetscFree(a->colmap);
1220*0452661fSBarry Smith     if (a->garray) PetscFree(a->garray);
12210de55854SLois Curfman McInnes     if (a->lvec) VecDestroy(a->lvec);
1222a56f8943SBarry Smith     if (a->Mvctx) VecScatterDestroy(a->Mvctx);
1223*0452661fSBarry Smith     PetscFree(a);
1224416022c9SBarry Smith     PetscMemcpy(A,B,sizeof(struct _Mat));
1225*0452661fSBarry Smith     PetscHeaderDestroy(B);
12260de55854SLois Curfman McInnes   }
1227b7c46309SBarry Smith   return 0;
1228b7c46309SBarry Smith }
1229b7c46309SBarry Smith 
1230fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *);
1231a56f8943SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat,Mat *,int);
1232d6dfbf8fSBarry Smith 
12338a729477SBarry Smith /* -------------------------------------------------------------------*/
12342ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ,
123539e00950SLois Curfman McInnes        MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ,
123644a69424SLois Curfman McInnes        MatMult_MPIAIJ,MatMultAdd_MPIAIJ,
123744a69424SLois Curfman McInnes        MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ,
1238299609e3SLois Curfman McInnes        MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ,
1239299609e3SLois Curfman McInnes        MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ,
1240299609e3SLois Curfman McInnes        MatLUFactor_MPIAIJ,0,
124144a69424SLois Curfman McInnes        MatRelax_MPIAIJ,
1242b7c46309SBarry Smith        MatTranspose_MPIAIJ,
1243a66be287SLois Curfman McInnes        MatGetInfo_MPIAIJ,0,
1244855ac2c5SLois Curfman McInnes        MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ,
1245ee50ffe9SBarry Smith        MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ,
12461eb62cbbSBarry Smith        0,
1247299609e3SLois Curfman McInnes        MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ,
1248299609e3SLois Curfman McInnes        MatGetReordering_MPIAIJ,
1249299609e3SLois Curfman McInnes        MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0,
1250d1710a03SLois Curfman McInnes        MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ,
1251299609e3SLois Curfman McInnes        MatILUFactorSymbolic_MPIAIJ,0,
1252ff7509f2SBarry Smith        0,0,MatConvert_MPIAIJ,0,0,MatCopyPrivate_MPIAIJ};
12538a729477SBarry Smith 
12541987afe7SBarry Smith /*@C
1255ff756334SLois Curfman McInnes    MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format
1256ff756334SLois Curfman McInnes    (the default parallel PETSc format).
12578a729477SBarry Smith 
12588a729477SBarry Smith    Input Parameters:
12591eb62cbbSBarry Smith .  comm - MPI communicator
12607d3e4905SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
12617d3e4905SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated
12627d3e4905SLois Curfman McInnes            if N is given)
12637d3e4905SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
12647d3e4905SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated
12657d3e4905SLois Curfman McInnes            if n is given)
1266ab693e5aSLois Curfman McInnes .  d_nz - number of nonzeros per row in diagonal portion of local submatrix
1267ff756334SLois Curfman McInnes            (same for all local rows)
1268ab693e5aSLois Curfman McInnes .  d_nzz - number of nonzeros per row in diagonal portion of local submatrix
1269ab693e5aSLois Curfman McInnes            or null (possibly different for each row).  You must leave room
1270ab693e5aSLois Curfman McInnes            for the diagonal entry even if it is zero.
1271ab693e5aSLois Curfman McInnes .  o_nz - number of nonzeros per row in off-diagonal portion of local
1272ab693e5aSLois Curfman McInnes            submatrix (same for all local rows).
1273ab693e5aSLois Curfman McInnes .  o_nzz - number of nonzeros per row in off-diagonal portion of local
1274ab693e5aSLois Curfman McInnes            submatrix or null (possibly different for each row).
12758a729477SBarry Smith 
1276ff756334SLois Curfman McInnes    Output Parameter:
12778a729477SBarry Smith .  newmat - the matrix
12788a729477SBarry Smith 
1279ff756334SLois Curfman McInnes    Notes:
1280ff756334SLois Curfman McInnes    The AIJ format (also called the Yale sparse matrix format or
1281ff756334SLois Curfman McInnes    compressed row storage), is fully compatible with standard Fortran 77
12820002213bSLois Curfman McInnes    storage.  That is, the stored row and column indices can begin at
12830002213bSLois Curfman McInnes    either one (as in Fortran) or zero.  See the users manual for details.
1284ff756334SLois Curfman McInnes 
1285ff756334SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
1286ff756334SLois Curfman McInnes    (possibly both).
1287ff756334SLois Curfman McInnes 
1288e0245417SLois Curfman McInnes    Storage Information:
1289e0245417SLois Curfman McInnes    For a square global matrix we define each processor's diagonal portion
1290e0245417SLois Curfman McInnes    to be its local rows and the corresponding columns (a square submatrix);
1291e0245417SLois Curfman McInnes    each processor's off-diagonal portion encompasses the remainder of the
1292e0245417SLois Curfman McInnes    local matrix (a rectangular submatrix).
1293e0245417SLois Curfman McInnes 
1294e0245417SLois Curfman McInnes    The user can specify preallocated storage for the diagonal part of
1295e0245417SLois Curfman McInnes    the local submatrix with either d_nz or d_nnz (not both). Set both
1296e0245417SLois Curfman McInnes    d_nz and d_nnz to zero for PETSc to control dynamic memory allocation.
1297e0245417SLois Curfman McInnes    Likewise, specify preallocated storage for the off-diagonal part of
1298e0245417SLois Curfman McInnes    the local submatrix with o_nz or o_nnz (not both).
1299ff756334SLois Curfman McInnes 
1300dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel
1301ff756334SLois Curfman McInnes 
1302fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
13038a729477SBarry Smith @*/
13041eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N,
13051eb62cbbSBarry Smith                     int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat)
13068a729477SBarry Smith {
13078a729477SBarry Smith   Mat          mat;
1308416022c9SBarry Smith   Mat_MPIAIJ   *a;
13096abc6512SBarry Smith   int          ierr, i,sum[2],work[2];
1310416022c9SBarry Smith 
13118a729477SBarry Smith   *newmat         = 0;
1312*0452661fSBarry Smith   PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm);
1313a5a9c739SBarry Smith   PLogObjectCreate(mat);
1314*0452661fSBarry Smith   mat->data       = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a);
1315416022c9SBarry Smith   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
131644a69424SLois Curfman McInnes   mat->destroy    = MatDestroy_MPIAIJ;
131744a69424SLois Curfman McInnes   mat->view       = MatView_MPIAIJ;
13188a729477SBarry Smith   mat->factor     = 0;
1319d6dfbf8fSBarry Smith 
132064119d58SLois Curfman McInnes   a->insertmode = NOT_SET_VALUES;
132117699dbbSLois Curfman McInnes   MPI_Comm_rank(comm,&a->rank);
132217699dbbSLois Curfman McInnes   MPI_Comm_size(comm,&a->size);
13231eb62cbbSBarry Smith 
13241987afe7SBarry Smith   if (m == PETSC_DECIDE && (d_nnz || o_nnz))
13251987afe7SBarry Smith     SETERRQ(1,"MatCreateMPIAIJ:Cannot have PETSc decide rows but set d_nnz or o_nnz");
13261987afe7SBarry Smith 
1327dbd7a890SLois Curfman McInnes   if (M == PETSC_DECIDE || N == PETSC_DECIDE) {
13281eb62cbbSBarry Smith     work[0] = m; work[1] = n;
1329d65a2f8fSBarry Smith     MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );
1330dbd7a890SLois Curfman McInnes     if (M == PETSC_DECIDE) M = sum[0];
1331dbd7a890SLois Curfman McInnes     if (N == PETSC_DECIDE) N = sum[1];
13321eb62cbbSBarry Smith   }
133317699dbbSLois Curfman McInnes   if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);}
133417699dbbSLois Curfman McInnes   if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);}
1335416022c9SBarry Smith   a->m = m;
1336416022c9SBarry Smith   a->n = n;
1337416022c9SBarry Smith   a->N = N;
1338416022c9SBarry Smith   a->M = M;
13391eb62cbbSBarry Smith 
13401eb62cbbSBarry Smith   /* build local table of row and column ownerships */
1341*0452661fSBarry Smith   a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners);
134217699dbbSLois Curfman McInnes   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+
1343464493b3SBarry Smith                        sizeof(Mat_MPIAIJ));
134417699dbbSLois Curfman McInnes   a->cowners = a->rowners + a->size + 1;
1345416022c9SBarry Smith   MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm);
1346416022c9SBarry Smith   a->rowners[0] = 0;
134717699dbbSLois Curfman McInnes   for ( i=2; i<=a->size; i++ ) {
1348416022c9SBarry Smith     a->rowners[i] += a->rowners[i-1];
13498a729477SBarry Smith   }
135017699dbbSLois Curfman McInnes   a->rstart = a->rowners[a->rank];
135117699dbbSLois Curfman McInnes   a->rend   = a->rowners[a->rank+1];
1352416022c9SBarry Smith   MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm);
1353416022c9SBarry Smith   a->cowners[0] = 0;
135417699dbbSLois Curfman McInnes   for ( i=2; i<=a->size; i++ ) {
1355416022c9SBarry Smith     a->cowners[i] += a->cowners[i-1];
13568a729477SBarry Smith   }
135717699dbbSLois Curfman McInnes   a->cstart = a->cowners[a->rank];
135817699dbbSLois Curfman McInnes   a->cend   = a->cowners[a->rank+1];
13598a729477SBarry Smith 
1360416022c9SBarry Smith   ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&a->A); CHKERRQ(ierr);
1361416022c9SBarry Smith   PLogObjectParent(mat,a->A);
1362416022c9SBarry Smith   ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&a->B); CHKERRQ(ierr);
1363416022c9SBarry Smith   PLogObjectParent(mat,a->B);
13648a729477SBarry Smith 
13651eb62cbbSBarry Smith   /* build cache for off array entries formed */
1366416022c9SBarry Smith   ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr);
1367416022c9SBarry Smith   a->colmap    = 0;
1368416022c9SBarry Smith   a->garray    = 0;
13698a729477SBarry Smith 
13701eb62cbbSBarry Smith   /* stuff used for matrix vector multiply */
1371416022c9SBarry Smith   a->lvec      = 0;
1372416022c9SBarry Smith   a->Mvctx     = 0;
1373416022c9SBarry Smith   a->assembled = 0;
13748a729477SBarry Smith 
1375d6dfbf8fSBarry Smith   *newmat = mat;
1376d6dfbf8fSBarry Smith   return 0;
1377d6dfbf8fSBarry Smith }
1378c74985f6SBarry Smith 
1379a56f8943SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat matin,Mat *newmat,int cpvalues)
1380d6dfbf8fSBarry Smith {
1381d6dfbf8fSBarry Smith   Mat        mat;
1382416022c9SBarry Smith   Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data;
13832ee70a88SLois Curfman McInnes   int        ierr, len;
1384d6dfbf8fSBarry Smith 
1385416022c9SBarry Smith   if (!oldmat->assembled) SETERRQ(1,"MatCopyPrivate_MPIAIJ:Must assemble matrix");
1386416022c9SBarry Smith   *newmat       = 0;
1387*0452661fSBarry Smith   PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm);
1388a5a9c739SBarry Smith   PLogObjectCreate(mat);
1389*0452661fSBarry Smith   mat->data     = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a);
1390416022c9SBarry Smith   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
139144a69424SLois Curfman McInnes   mat->destroy  = MatDestroy_MPIAIJ;
139244a69424SLois Curfman McInnes   mat->view     = MatView_MPIAIJ;
1393d6dfbf8fSBarry Smith   mat->factor   = matin->factor;
1394d6dfbf8fSBarry Smith 
1395416022c9SBarry Smith   a->m          = oldmat->m;
1396416022c9SBarry Smith   a->n          = oldmat->n;
1397416022c9SBarry Smith   a->M          = oldmat->M;
1398416022c9SBarry Smith   a->N          = oldmat->N;
1399d6dfbf8fSBarry Smith 
1400416022c9SBarry Smith   a->assembled  = 1;
1401416022c9SBarry Smith   a->rstart     = oldmat->rstart;
1402416022c9SBarry Smith   a->rend       = oldmat->rend;
1403416022c9SBarry Smith   a->cstart     = oldmat->cstart;
1404416022c9SBarry Smith   a->cend       = oldmat->cend;
140517699dbbSLois Curfman McInnes   a->size       = oldmat->size;
140617699dbbSLois Curfman McInnes   a->rank       = oldmat->rank;
140764119d58SLois Curfman McInnes   a->insertmode = NOT_SET_VALUES;
1408d6dfbf8fSBarry Smith 
1409*0452661fSBarry Smith   a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners);
141017699dbbSLois Curfman McInnes   PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ));
141117699dbbSLois Curfman McInnes   PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int));
1412416022c9SBarry Smith   ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr);
14132ee70a88SLois Curfman McInnes   if (oldmat->colmap) {
1414*0452661fSBarry Smith     a->colmap = (int *) PetscMalloc((a->N)*sizeof(int));CHKPTRQ(a->colmap);
1415416022c9SBarry Smith     PLogObjectMemory(mat,(a->N)*sizeof(int));
1416416022c9SBarry Smith     PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int));
1417416022c9SBarry Smith   } else a->colmap = 0;
1418ec8511deSBarry Smith   if (oldmat->garray && (len = ((Mat_SeqAIJ *) (oldmat->B->data))->n)) {
1419*0452661fSBarry Smith     a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray);
1420464493b3SBarry Smith     PLogObjectMemory(mat,len*sizeof(int));
1421416022c9SBarry Smith     PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));
1422416022c9SBarry Smith   } else a->garray = 0;
1423d6dfbf8fSBarry Smith 
1424416022c9SBarry Smith   ierr =  VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr);
1425416022c9SBarry Smith   PLogObjectParent(mat,a->lvec);
1426a56f8943SBarry Smith   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr);
1427416022c9SBarry Smith   PLogObjectParent(mat,a->Mvctx);
1428416022c9SBarry Smith   ierr =  MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr);
1429416022c9SBarry Smith   PLogObjectParent(mat,a->A);
1430416022c9SBarry Smith   ierr =  MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr);
1431416022c9SBarry Smith   PLogObjectParent(mat,a->B);
14328a729477SBarry Smith   *newmat = mat;
14338a729477SBarry Smith   return 0;
14348a729477SBarry Smith }
1435416022c9SBarry Smith 
1436416022c9SBarry Smith #include "sysio.h"
1437416022c9SBarry Smith 
143802834360SBarry Smith int MatLoad_MPIAIJorMPIRow(Viewer bview,MatType type,Mat *newmat)
1439416022c9SBarry Smith {
1440d65a2f8fSBarry Smith   Mat          A;
1441416022c9SBarry Smith   int          i, nz, ierr, j,rstart, rend, fd;
1442d65a2f8fSBarry Smith   Scalar       *vals,*svals;
1443416022c9SBarry Smith   PetscObject  vobj = (PetscObject) bview;
1444416022c9SBarry Smith   MPI_Comm     comm = vobj->comm;
1445416022c9SBarry Smith   MPI_Status   status;
144617699dbbSLois Curfman McInnes   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols;
1447d65a2f8fSBarry Smith   int          *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols;
1448d65a2f8fSBarry Smith   int          tag = ((PetscObject)bview)->tag;
1449416022c9SBarry Smith 
145017699dbbSLois Curfman McInnes   MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank);
145117699dbbSLois Curfman McInnes   if (!rank) {
1452416022c9SBarry Smith     ierr = ViewerFileGetDescriptor_Private(bview,&fd); CHKERRQ(ierr);
1453416022c9SBarry Smith     ierr = SYRead(fd,(char *)header,4,SYINT); CHKERRQ(ierr);
145402834360SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:not matrix object");
1455416022c9SBarry Smith   }
1456416022c9SBarry Smith 
1457416022c9SBarry Smith   MPI_Bcast(header+1,3,MPI_INT,0,comm);
1458416022c9SBarry Smith   M = header[1]; N = header[2];
1459416022c9SBarry Smith   /* determine ownership of all rows */
146017699dbbSLois Curfman McInnes   m = M/size + ((M % size) > rank);
1461*0452661fSBarry Smith   rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners);
1462416022c9SBarry Smith   MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);
1463416022c9SBarry Smith   rowners[0] = 0;
146417699dbbSLois Curfman McInnes   for ( i=2; i<=size; i++ ) {
1465416022c9SBarry Smith     rowners[i] += rowners[i-1];
1466416022c9SBarry Smith   }
146717699dbbSLois Curfman McInnes   rstart = rowners[rank];
146817699dbbSLois Curfman McInnes   rend   = rowners[rank+1];
1469416022c9SBarry Smith 
1470416022c9SBarry Smith   /* distribute row lengths to all processors */
1471*0452661fSBarry Smith   ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens);
1472416022c9SBarry Smith   offlens = ourlens + (rend-rstart);
147317699dbbSLois Curfman McInnes   if (!rank) {
1474*0452661fSBarry Smith     rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths);
1475416022c9SBarry Smith     ierr = SYRead(fd,rowlengths,M,SYINT); CHKERRQ(ierr);
1476*0452661fSBarry Smith     sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts);
147717699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i];
1478d65a2f8fSBarry Smith     MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);
1479*0452661fSBarry Smith     PetscFree(sndcounts);
1480416022c9SBarry Smith   }
1481416022c9SBarry Smith   else {
1482416022c9SBarry Smith     MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);
1483416022c9SBarry Smith   }
1484416022c9SBarry Smith 
148517699dbbSLois Curfman McInnes   if (!rank) {
1486416022c9SBarry Smith     /* calculate the number of nonzeros on each processor */
1487*0452661fSBarry Smith     procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz);
1488cddf8d76SBarry Smith     PetscMemzero(procsnz,size*sizeof(int));
148917699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) {
1490416022c9SBarry Smith       for ( j=rowners[i]; j< rowners[i+1]; j++ ) {
1491416022c9SBarry Smith         procsnz[i] += rowlengths[j];
1492416022c9SBarry Smith       }
1493416022c9SBarry Smith     }
1494*0452661fSBarry Smith     PetscFree(rowlengths);
1495416022c9SBarry Smith 
1496416022c9SBarry Smith     /* determine max buffer needed and allocate it */
1497416022c9SBarry Smith     maxnz = 0;
149817699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) {
1499*0452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
1500416022c9SBarry Smith     }
1501*0452661fSBarry Smith     cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols);
1502416022c9SBarry Smith 
1503416022c9SBarry Smith     /* read in my part of the matrix column indices  */
1504416022c9SBarry Smith     nz = procsnz[0];
1505*0452661fSBarry Smith     mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
1506d65a2f8fSBarry Smith     ierr = SYRead(fd,mycols,nz,SYINT); CHKERRQ(ierr);
1507d65a2f8fSBarry Smith 
1508d65a2f8fSBarry Smith     /* read in every one elses and ship off */
150917699dbbSLois Curfman McInnes     for ( i=1; i<size; i++ ) {
1510d65a2f8fSBarry Smith       nz = procsnz[i];
1511416022c9SBarry Smith       ierr = SYRead(fd,cols,nz,SYINT); CHKERRQ(ierr);
1512d65a2f8fSBarry Smith       MPI_Send(cols,nz,MPI_INT,i,tag,comm);
1513d65a2f8fSBarry Smith     }
1514*0452661fSBarry Smith     PetscFree(cols);
1515416022c9SBarry Smith   }
1516416022c9SBarry Smith   else {
1517416022c9SBarry Smith     /* determine buffer space needed for message */
1518416022c9SBarry Smith     nz = 0;
1519416022c9SBarry Smith     for ( i=0; i<m; i++ ) {
1520416022c9SBarry Smith       nz += ourlens[i];
1521416022c9SBarry Smith     }
1522*0452661fSBarry Smith     mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
1523416022c9SBarry Smith 
1524416022c9SBarry Smith     /* receive message of column indices*/
1525d65a2f8fSBarry Smith     MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);
1526416022c9SBarry Smith     MPI_Get_count(&status,MPI_INT,&maxnz);
152702834360SBarry Smith     if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file");
1528416022c9SBarry Smith   }
1529416022c9SBarry Smith 
1530416022c9SBarry Smith   /* loop over local rows, determining number of off diagonal entries */
1531cddf8d76SBarry Smith   PetscMemzero(offlens,m*sizeof(int));
1532416022c9SBarry Smith   jj = 0;
1533416022c9SBarry Smith   for ( i=0; i<m; i++ ) {
1534416022c9SBarry Smith     for ( j=0; j<ourlens[i]; j++ ) {
1535d65a2f8fSBarry Smith       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
1536416022c9SBarry Smith       jj++;
1537416022c9SBarry Smith     }
1538416022c9SBarry Smith   }
1539d65a2f8fSBarry Smith 
1540d65a2f8fSBarry Smith   /* create our matrix */
1541416022c9SBarry Smith   for ( i=0; i<m; i++ ) {
1542416022c9SBarry Smith     ourlens[i] -= offlens[i];
1543416022c9SBarry Smith   }
1544d65a2f8fSBarry Smith   if (type == MATMPIAIJ) {
1545d65a2f8fSBarry Smith     ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr);
1546d65a2f8fSBarry Smith   }
1547d65a2f8fSBarry Smith   else if (type == MATMPIROW) {
1548d65a2f8fSBarry Smith     ierr = MatCreateMPIRow(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr);
1549d65a2f8fSBarry Smith   }
1550d65a2f8fSBarry Smith   A = *newmat;
1551d65a2f8fSBarry Smith   MatSetOption(A,COLUMNS_SORTED);
1552d65a2f8fSBarry Smith   for ( i=0; i<m; i++ ) {
1553d65a2f8fSBarry Smith     ourlens[i] += offlens[i];
1554d65a2f8fSBarry Smith   }
1555416022c9SBarry Smith 
155617699dbbSLois Curfman McInnes   if (!rank) {
1557*0452661fSBarry Smith     vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals);
1558416022c9SBarry Smith 
1559416022c9SBarry Smith     /* read in my part of the matrix numerical values  */
1560416022c9SBarry Smith     nz = procsnz[0];
1561416022c9SBarry Smith     ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr);
1562d65a2f8fSBarry Smith 
1563d65a2f8fSBarry Smith     /* insert into matrix */
1564d65a2f8fSBarry Smith     jj      = rstart;
1565d65a2f8fSBarry Smith     smycols = mycols;
1566d65a2f8fSBarry Smith     svals   = vals;
1567d65a2f8fSBarry Smith     for ( i=0; i<m; i++ ) {
1568d65a2f8fSBarry Smith       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1569d65a2f8fSBarry Smith       smycols += ourlens[i];
1570d65a2f8fSBarry Smith       svals   += ourlens[i];
1571d65a2f8fSBarry Smith       jj++;
1572416022c9SBarry Smith     }
1573416022c9SBarry Smith 
1574d65a2f8fSBarry Smith     /* read in other processors and ship out */
157517699dbbSLois Curfman McInnes     for ( i=1; i<size; i++ ) {
1576416022c9SBarry Smith       nz = procsnz[i];
1577416022c9SBarry Smith       ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr);
1578d65a2f8fSBarry Smith       MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);
1579416022c9SBarry Smith     }
1580*0452661fSBarry Smith     PetscFree(procsnz);
1581416022c9SBarry Smith   }
1582d65a2f8fSBarry Smith   else {
1583d65a2f8fSBarry Smith     /* receive numeric values */
1584*0452661fSBarry Smith     vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals);
1585416022c9SBarry Smith 
1586d65a2f8fSBarry Smith     /* receive message of values*/
1587d65a2f8fSBarry Smith     MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);
1588d65a2f8fSBarry Smith     MPI_Get_count(&status,MPIU_SCALAR,&maxnz);
158902834360SBarry Smith     if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file");
1590d65a2f8fSBarry Smith 
1591d65a2f8fSBarry Smith     /* insert into matrix */
1592d65a2f8fSBarry Smith     jj      = rstart;
1593d65a2f8fSBarry Smith     smycols = mycols;
1594d65a2f8fSBarry Smith     svals   = vals;
1595d65a2f8fSBarry Smith     for ( i=0; i<m; i++ ) {
1596d65a2f8fSBarry Smith       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1597d65a2f8fSBarry Smith       smycols += ourlens[i];
1598d65a2f8fSBarry Smith       svals   += ourlens[i];
1599d65a2f8fSBarry Smith       jj++;
1600d65a2f8fSBarry Smith     }
1601d65a2f8fSBarry Smith   }
1602*0452661fSBarry Smith   PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners);
1603d65a2f8fSBarry Smith 
1604d65a2f8fSBarry Smith   ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
1605d65a2f8fSBarry Smith   ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
1606416022c9SBarry Smith   return 0;
1607416022c9SBarry Smith }
1608