xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 08480c60afa5ef1d2e4e27b9ebdf48b02c6a2186)
1cb512458SBarry Smith #ifndef lint
2*08480c60SBarry Smith static char vcid[] = "$Id: mpiaij.c,v 1.94 1995/10/23 18:37:47 curfman Exp bsmith $";
3cb512458SBarry Smith #endif
48a729477SBarry Smith 
51eb62cbbSBarry Smith #include "mpiaij.h"
68a729477SBarry Smith #include "vec/vecimpl.h"
7d6dfbf8fSBarry Smith #include "inline/spops.h"
88a729477SBarry Smith 
99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column
109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
119e25ed09SBarry Smith storage of the matrix.  This is done in a non scable way since the
129e25ed09SBarry Smith length of colmap equals the global matrix length.
139e25ed09SBarry Smith */
14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat)
159e25ed09SBarry Smith {
1644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
17ec8511deSBarry Smith   Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data;
18416022c9SBarry Smith   int        n = B->n,i,shift = B->indexshift;
19dbb450caSBarry Smith 
2078b31e54SBarry Smith   aij->colmap = (int *) PETSCMALLOC(aij->N*sizeof(int));CHKPTRQ(aij->colmap);
21464493b3SBarry Smith   PLogObjectMemory(mat,aij->N*sizeof(int));
22416022c9SBarry Smith   PetscZero(aij->colmap,aij->N*sizeof(int));
23dbb450caSBarry Smith   for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i-shift;
249e25ed09SBarry Smith   return 0;
259e25ed09SBarry Smith }
269e25ed09SBarry Smith 
272493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat);
282493cbb0SBarry Smith 
2951c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm)
30299609e3SLois Curfman McInnes {
31299609e3SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
32299609e3SLois Curfman McInnes   int ierr;
3317699dbbSLois Curfman McInnes   if (aij->size == 1) {
3451c98ccdSLois Curfman McInnes     ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr);
3548d91487SBarry Smith   } else SETERRQ(1,"MatGetReordering_MPIAIJ:not supported in parallel");
36299609e3SLois Curfman McInnes   return 0;
37299609e3SLois Curfman McInnes }
38299609e3SLois Curfman McInnes 
392ee70a88SLois Curfman McInnes static int MatSetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,
401eb62cbbSBarry Smith                                int *idxn,Scalar *v,InsertMode addv)
418a729477SBarry Smith {
4244a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
43dbb450caSBarry Smith   Mat_SeqAIJ *C = (Mat_SeqAIJ*) aij->A->data;
441eb62cbbSBarry Smith   int        ierr,i,j, rstart = aij->rstart, rend = aij->rend;
451eb62cbbSBarry Smith   int        cstart = aij->cstart, cend = aij->cend,row,col;
46dbb450caSBarry Smith   int        shift = C->indexshift;
478a729477SBarry Smith 
4864119d58SLois Curfman McInnes   if (aij->insertmode != NOT_SET_VALUES && aij->insertmode != addv) {
4948d91487SBarry Smith     SETERRQ(1,"MatSetValues_MPIAIJ:Cannot mix inserts and adds");
508a729477SBarry Smith   }
511eb62cbbSBarry Smith   aij->insertmode = addv;
528a729477SBarry Smith   for ( i=0; i<m; i++ ) {
53bbb6d6a8SBarry Smith     if (idxm[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row");
54bbb6d6a8SBarry Smith     if (idxm[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large");
551eb62cbbSBarry Smith     if (idxm[i] >= rstart && idxm[i] < rend) {
561eb62cbbSBarry Smith       row = idxm[i] - rstart;
571eb62cbbSBarry Smith       for ( j=0; j<n; j++ ) {
58bbb6d6a8SBarry Smith         if (idxn[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column");
59bbb6d6a8SBarry Smith         if (idxn[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large");
601eb62cbbSBarry Smith         if (idxn[j] >= cstart && idxn[j] < cend){
611eb62cbbSBarry Smith           col = idxn[j] - cstart;
6278b31e54SBarry Smith           ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr);
631eb62cbbSBarry Smith         }
641eb62cbbSBarry Smith         else {
65d6dfbf8fSBarry Smith           if (aij->assembled) {
66b7c46309SBarry Smith             if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);}
67dbb450caSBarry Smith             col = aij->colmap[idxn[j]] + shift;
68ec8511deSBarry Smith             if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
692493cbb0SBarry Smith               ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
702493cbb0SBarry Smith               col =  idxn[j];
71d6dfbf8fSBarry Smith             }
729e25ed09SBarry Smith           }
739e25ed09SBarry Smith           else col = idxn[j];
7478b31e54SBarry Smith           ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr);
751eb62cbbSBarry Smith         }
761eb62cbbSBarry Smith       }
771eb62cbbSBarry Smith     }
781eb62cbbSBarry Smith     else {
79416022c9SBarry Smith       ierr = StashValues_Private(&aij->stash,idxm[i],n,idxn,v+i*n,addv);CHKERRQ(ierr);
801eb62cbbSBarry Smith     }
818a729477SBarry Smith   }
828a729477SBarry Smith   return 0;
838a729477SBarry Smith }
848a729477SBarry Smith 
85fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode)
868a729477SBarry Smith {
8744a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
88d6dfbf8fSBarry Smith   MPI_Comm    comm = mat->comm;
8917699dbbSLois Curfman McInnes   int         size = aij->size, *owners = aij->rowners;
9017699dbbSLois Curfman McInnes   int         rank = aij->rank,tag = mat->tag, *owner,*starts,count,ierr;
911eb62cbbSBarry Smith   MPI_Request *send_waits,*recv_waits;
926abc6512SBarry Smith   int         *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
931eb62cbbSBarry Smith   InsertMode  addv;
941eb62cbbSBarry Smith   Scalar      *rvalues,*svalues;
951eb62cbbSBarry Smith 
961eb62cbbSBarry Smith   /* make sure all processors are either in INSERTMODE or ADDMODE */
97d65a2f8fSBarry Smith   MPI_Allreduce(&aij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);
98dbb450caSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
99bbb6d6a8SBarry Smith     SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added");
1001eb62cbbSBarry Smith   }
1011eb62cbbSBarry Smith   aij->insertmode = addv; /* in case this processor had no cache */
1021eb62cbbSBarry Smith 
1031eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
10417699dbbSLois Curfman McInnes   nprocs = (int *) PETSCMALLOC( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
10517699dbbSLois Curfman McInnes   PetscZero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
10678b31e54SBarry Smith   owner = (int *) PETSCMALLOC( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
1071eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
1081eb62cbbSBarry Smith     idx = aij->stash.idx[i];
10917699dbbSLois Curfman McInnes     for ( j=0; j<size; j++ ) {
1101eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
1111eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
1128a729477SBarry Smith       }
1138a729477SBarry Smith     }
1148a729477SBarry Smith   }
11517699dbbSLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
1161eb62cbbSBarry Smith 
1171eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
11817699dbbSLois Curfman McInnes   work = (int *) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(work);
11917699dbbSLois Curfman McInnes   MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);
12017699dbbSLois Curfman McInnes   nreceives = work[rank];
12117699dbbSLois Curfman McInnes   MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);
12217699dbbSLois Curfman McInnes   nmax = work[rank];
12378b31e54SBarry Smith   PETSCFREE(work);
1241eb62cbbSBarry Smith 
1251eb62cbbSBarry Smith   /* post receives:
1261eb62cbbSBarry Smith        1) each message will consist of ordered pairs
1271eb62cbbSBarry Smith      (global index,value) we store the global index as a double
128d6dfbf8fSBarry Smith      to simplify the message passing.
1291eb62cbbSBarry Smith        2) since we don't know how long each individual message is we
1301eb62cbbSBarry Smith      allocate the largest needed buffer for each receive. Potentially
1311eb62cbbSBarry Smith      this is a lot of wasted space.
1321eb62cbbSBarry Smith 
1331eb62cbbSBarry Smith 
1341eb62cbbSBarry Smith        This could be done better.
1351eb62cbbSBarry Smith   */
13678b31e54SBarry Smith   rvalues = (Scalar *) PETSCMALLOC(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));
13778b31e54SBarry Smith   CHKPTRQ(rvalues);
13878b31e54SBarry Smith   recv_waits = (MPI_Request *) PETSCMALLOC((nreceives+1)*sizeof(MPI_Request));
13978b31e54SBarry Smith   CHKPTRQ(recv_waits);
1401eb62cbbSBarry Smith   for ( i=0; i<nreceives; i++ ) {
141416022c9SBarry Smith     MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,
1421eb62cbbSBarry Smith               comm,recv_waits+i);
1431eb62cbbSBarry Smith   }
1441eb62cbbSBarry Smith 
1451eb62cbbSBarry Smith   /* do sends:
1461eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
1471eb62cbbSBarry Smith          the ith processor
1481eb62cbbSBarry Smith   */
149416022c9SBarry Smith   svalues = (Scalar *) PETSCMALLOC(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues);
15078b31e54SBarry Smith   send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request));
15178b31e54SBarry Smith   CHKPTRQ(send_waits);
15217699dbbSLois Curfman McInnes   starts = (int *) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(starts);
1531eb62cbbSBarry Smith   starts[0] = 0;
15417699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
1551eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
1561eb62cbbSBarry Smith     svalues[3*starts[owner[i]]]       = (Scalar)  aij->stash.idx[i];
1571eb62cbbSBarry Smith     svalues[3*starts[owner[i]]+1]     = (Scalar)  aij->stash.idy[i];
1581eb62cbbSBarry Smith     svalues[3*(starts[owner[i]]++)+2] =  aij->stash.array[i];
1591eb62cbbSBarry Smith   }
16078b31e54SBarry Smith   PETSCFREE(owner);
1611eb62cbbSBarry Smith   starts[0] = 0;
16217699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
1631eb62cbbSBarry Smith   count = 0;
16417699dbbSLois Curfman McInnes   for ( i=0; i<size; i++ ) {
1651eb62cbbSBarry Smith     if (procs[i]) {
166416022c9SBarry Smith       MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,
1671eb62cbbSBarry Smith                 comm,send_waits+count++);
1681eb62cbbSBarry Smith     }
1691eb62cbbSBarry Smith   }
17078b31e54SBarry Smith   PETSCFREE(starts); PETSCFREE(nprocs);
1711eb62cbbSBarry Smith 
1721eb62cbbSBarry Smith   /* Free cache space */
17378b31e54SBarry Smith   ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr);
1741eb62cbbSBarry Smith 
1751eb62cbbSBarry Smith   aij->svalues    = svalues;    aij->rvalues    = rvalues;
1761eb62cbbSBarry Smith   aij->nsends     = nsends;     aij->nrecvs     = nreceives;
1771eb62cbbSBarry Smith   aij->send_waits = send_waits; aij->recv_waits = recv_waits;
1781eb62cbbSBarry Smith   aij->rmax       = nmax;
1791eb62cbbSBarry Smith 
1801eb62cbbSBarry Smith   return 0;
1811eb62cbbSBarry Smith }
18244a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat);
1831eb62cbbSBarry Smith 
184fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode)
1851eb62cbbSBarry Smith {
18644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
187dbb450caSBarry Smith   Mat_SeqAIJ *C = (Mat_SeqAIJ *) aij->A->data;
1881eb62cbbSBarry Smith   MPI_Status  *send_status,recv_status;
189416022c9SBarry Smith   int         imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr;
190416022c9SBarry Smith   int         row,col,other_disassembled,shift = C->indexshift;
1911eb62cbbSBarry Smith   Scalar      *values,val;
1921eb62cbbSBarry Smith   InsertMode  addv = aij->insertmode;
1931eb62cbbSBarry Smith 
1941eb62cbbSBarry Smith   /*  wait on receives */
1951eb62cbbSBarry Smith   while (count) {
196d6dfbf8fSBarry Smith     MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status);
1971eb62cbbSBarry Smith     /* unpack receives into our local space */
198d6dfbf8fSBarry Smith     values = aij->rvalues + 3*imdex*aij->rmax;
199c60448a5SBarry Smith     MPI_Get_count(&recv_status,MPIU_SCALAR,&n);
2001eb62cbbSBarry Smith     n = n/3;
2011eb62cbbSBarry Smith     for ( i=0; i<n; i++ ) {
2021eb62cbbSBarry Smith       row = (int) PETSCREAL(values[3*i]) - aij->rstart;
2031eb62cbbSBarry Smith       col = (int) PETSCREAL(values[3*i+1]);
2041eb62cbbSBarry Smith       val = values[3*i+2];
2051eb62cbbSBarry Smith       if (col >= aij->cstart && col < aij->cend) {
2061eb62cbbSBarry Smith         col -= aij->cstart;
2071eb62cbbSBarry Smith         MatSetValues(aij->A,1,&row,1,&col,&val,addv);
2081eb62cbbSBarry Smith       }
2091eb62cbbSBarry Smith       else {
210d6dfbf8fSBarry Smith         if (aij->assembled) {
211b7c46309SBarry Smith           if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);}
212dbb450caSBarry Smith           col = aij->colmap[col] + shift;
213ec8511deSBarry Smith           if (col < 0  && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
2142493cbb0SBarry Smith             ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
2152493cbb0SBarry Smith             col = (int) PETSCREAL(values[3*i+1]);
216d6dfbf8fSBarry Smith           }
2179e25ed09SBarry Smith         }
2181eb62cbbSBarry Smith         MatSetValues(aij->B,1,&row,1,&col,&val,addv);
2191eb62cbbSBarry Smith       }
2201eb62cbbSBarry Smith     }
2211eb62cbbSBarry Smith     count--;
2221eb62cbbSBarry Smith   }
22378b31e54SBarry Smith   PETSCFREE(aij->recv_waits); PETSCFREE(aij->rvalues);
2241eb62cbbSBarry Smith 
2251eb62cbbSBarry Smith   /* wait on sends */
2261eb62cbbSBarry Smith   if (aij->nsends) {
22778b31e54SBarry Smith     send_status = (MPI_Status *) PETSCMALLOC(aij->nsends*sizeof(MPI_Status));
22878b31e54SBarry Smith     CHKPTRQ(send_status);
2291eb62cbbSBarry Smith     MPI_Waitall(aij->nsends,aij->send_waits,send_status);
23078b31e54SBarry Smith     PETSCFREE(send_status);
2311eb62cbbSBarry Smith   }
23278b31e54SBarry Smith   PETSCFREE(aij->send_waits); PETSCFREE(aij->svalues);
2331eb62cbbSBarry Smith 
23464119d58SLois Curfman McInnes   aij->insertmode = NOT_SET_VALUES;
23578b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr);
23678b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr);
2371eb62cbbSBarry Smith 
2382493cbb0SBarry Smith   /* determine if any processor has disassembled, if so we must
2392493cbb0SBarry Smith      also disassemble ourselfs, in order that we may reassemble. */
240416022c9SBarry Smith   MPI_Allreduce(&aij->assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);
2412493cbb0SBarry Smith   if (aij->assembled && !other_disassembled) {
2422493cbb0SBarry Smith     ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
2432493cbb0SBarry Smith   }
2442493cbb0SBarry Smith 
2455e42470aSBarry Smith   if (!aij->assembled && mode == FINAL_ASSEMBLY) {
24678b31e54SBarry Smith     ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr);
247d6dfbf8fSBarry Smith     aij->assembled = 1;
2485e42470aSBarry Smith   }
24978b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr);
25078b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr);
2515e42470aSBarry Smith 
2528a729477SBarry Smith   return 0;
2538a729477SBarry Smith }
2548a729477SBarry Smith 
2552ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A)
2561eb62cbbSBarry Smith {
25744a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data;
258dbd7a890SLois Curfman McInnes   int        ierr;
25978b31e54SBarry Smith   ierr = MatZeroEntries(l->A); CHKERRQ(ierr);
26078b31e54SBarry Smith   ierr = MatZeroEntries(l->B); CHKERRQ(ierr);
2611eb62cbbSBarry Smith   return 0;
2621eb62cbbSBarry Smith }
2631eb62cbbSBarry Smith 
2641eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the
2651eb62cbbSBarry Smith    matrix is square and the column and row owerships are identical.
2661eb62cbbSBarry Smith    This is a BUG. The only way to fix it seems to be to access
2671eb62cbbSBarry Smith    aij->A and aij->B directly and not through the MatZeroRows()
2681eb62cbbSBarry Smith    routine.
2691eb62cbbSBarry Smith */
27044a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag)
2711eb62cbbSBarry Smith {
27244a69424SLois Curfman McInnes   Mat_MPIAIJ     *l = (Mat_MPIAIJ *) A->data;
27317699dbbSLois Curfman McInnes   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
2746abc6512SBarry Smith   int            *procs,*nprocs,j,found,idx,nsends,*work;
27517699dbbSLois Curfman McInnes   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
2765392566eSBarry Smith   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
277d6dfbf8fSBarry Smith   int            *lens,imdex,*lrows,*values;
278d6dfbf8fSBarry Smith   MPI_Comm       comm = A->comm;
2791eb62cbbSBarry Smith   MPI_Request    *send_waits,*recv_waits;
2801eb62cbbSBarry Smith   MPI_Status     recv_status,*send_status;
2811eb62cbbSBarry Smith   IS             istmp;
2821eb62cbbSBarry Smith 
28348d91487SBarry Smith   if (!l->assembled) SETERRQ(1,"MatZeroRows_MPIAIJ:Must assemble matrix");
28478b31e54SBarry Smith   ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr);
28578b31e54SBarry Smith   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
2861eb62cbbSBarry Smith 
2871eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
28817699dbbSLois Curfman McInnes   nprocs = (int *) PETSCMALLOC( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
28917699dbbSLois Curfman McInnes   PetscZero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
29078b31e54SBarry Smith   owner = (int *) PETSCMALLOC((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
2911eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
2921eb62cbbSBarry Smith     idx = rows[i];
2931eb62cbbSBarry Smith     found = 0;
29417699dbbSLois Curfman McInnes     for ( j=0; j<size; j++ ) {
2951eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
2961eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
2971eb62cbbSBarry Smith       }
2981eb62cbbSBarry Smith     }
299bbb6d6a8SBarry Smith     if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range");
3001eb62cbbSBarry Smith   }
30117699dbbSLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
3021eb62cbbSBarry Smith 
3031eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
30417699dbbSLois Curfman McInnes   work = (int *) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(work);
30517699dbbSLois Curfman McInnes   MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);
30617699dbbSLois Curfman McInnes   nrecvs = work[rank];
30717699dbbSLois Curfman McInnes   MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);
30817699dbbSLois Curfman McInnes   nmax = work[rank];
30978b31e54SBarry Smith   PETSCFREE(work);
3101eb62cbbSBarry Smith 
3111eb62cbbSBarry Smith   /* post receives:   */
31278b31e54SBarry Smith   rvalues = (int *) PETSCMALLOC((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */
31378b31e54SBarry Smith   CHKPTRQ(rvalues);
31478b31e54SBarry Smith   recv_waits = (MPI_Request *) PETSCMALLOC((nrecvs+1)*sizeof(MPI_Request));
31578b31e54SBarry Smith   CHKPTRQ(recv_waits);
3161eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
317416022c9SBarry Smith     MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);
3181eb62cbbSBarry Smith   }
3191eb62cbbSBarry Smith 
3201eb62cbbSBarry Smith   /* do sends:
3211eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
3221eb62cbbSBarry Smith          the ith processor
3231eb62cbbSBarry Smith   */
32478b31e54SBarry Smith   svalues = (int *) PETSCMALLOC( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
32578b31e54SBarry Smith   send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request));
32678b31e54SBarry Smith   CHKPTRQ(send_waits);
32717699dbbSLois Curfman McInnes   starts = (int *) PETSCMALLOC( (size+1)*sizeof(int) ); CHKPTRQ(starts);
3281eb62cbbSBarry Smith   starts[0] = 0;
32917699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3301eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
3311eb62cbbSBarry Smith     svalues[starts[owner[i]]++] = rows[i];
3321eb62cbbSBarry Smith   }
3331eb62cbbSBarry Smith   ISRestoreIndices(is,&rows);
3341eb62cbbSBarry Smith 
3351eb62cbbSBarry Smith   starts[0] = 0;
33617699dbbSLois Curfman McInnes   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3371eb62cbbSBarry Smith   count = 0;
33817699dbbSLois Curfman McInnes   for ( i=0; i<size; i++ ) {
3391eb62cbbSBarry Smith     if (procs[i]) {
340416022c9SBarry Smith       MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);
3411eb62cbbSBarry Smith     }
3421eb62cbbSBarry Smith   }
34378b31e54SBarry Smith   PETSCFREE(starts);
3441eb62cbbSBarry Smith 
34517699dbbSLois Curfman McInnes   base = owners[rank];
3461eb62cbbSBarry Smith 
3471eb62cbbSBarry Smith   /*  wait on receives */
34878b31e54SBarry Smith   lens   = (int *) PETSCMALLOC( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
3491eb62cbbSBarry Smith   source = lens + nrecvs;
3501eb62cbbSBarry Smith   count  = nrecvs; slen = 0;
3511eb62cbbSBarry Smith   while (count) {
352d6dfbf8fSBarry Smith     MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);
3531eb62cbbSBarry Smith     /* unpack receives into our local space */
3541eb62cbbSBarry Smith     MPI_Get_count(&recv_status,MPI_INT,&n);
355d6dfbf8fSBarry Smith     source[imdex]  = recv_status.MPI_SOURCE;
356d6dfbf8fSBarry Smith     lens[imdex]  = n;
3571eb62cbbSBarry Smith     slen += n;
3581eb62cbbSBarry Smith     count--;
3591eb62cbbSBarry Smith   }
36078b31e54SBarry Smith   PETSCFREE(recv_waits);
3611eb62cbbSBarry Smith 
3621eb62cbbSBarry Smith   /* move the data into the send scatter */
36378b31e54SBarry Smith   lrows = (int *) PETSCMALLOC( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
3641eb62cbbSBarry Smith   count = 0;
3651eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
3661eb62cbbSBarry Smith     values = rvalues + i*nmax;
3671eb62cbbSBarry Smith     for ( j=0; j<lens[i]; j++ ) {
3681eb62cbbSBarry Smith       lrows[count++] = values[j] - base;
3691eb62cbbSBarry Smith     }
3701eb62cbbSBarry Smith   }
37178b31e54SBarry Smith   PETSCFREE(rvalues); PETSCFREE(lens);
37278b31e54SBarry Smith   PETSCFREE(owner); PETSCFREE(nprocs);
3731eb62cbbSBarry Smith 
3741eb62cbbSBarry Smith   /* actually zap the local rows */
375416022c9SBarry Smith   ierr = ISCreateSeq(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
376464493b3SBarry Smith   PLogObjectParent(A,istmp);
377416022c9SBarry Smith   PETSCFREE(lrows);
37878b31e54SBarry Smith   ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr);
37978b31e54SBarry Smith   ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr);
38078b31e54SBarry Smith   ierr = ISDestroy(istmp); CHKERRQ(ierr);
3811eb62cbbSBarry Smith 
3821eb62cbbSBarry Smith   /* wait on sends */
3831eb62cbbSBarry Smith   if (nsends) {
38478b31e54SBarry Smith     send_status = (MPI_Status *) PETSCMALLOC(nsends*sizeof(MPI_Status));
38578b31e54SBarry Smith     CHKPTRQ(send_status);
3861eb62cbbSBarry Smith     MPI_Waitall(nsends,send_waits,send_status);
38778b31e54SBarry Smith     PETSCFREE(send_status);
3881eb62cbbSBarry Smith   }
38978b31e54SBarry Smith   PETSCFREE(send_waits); PETSCFREE(svalues);
3901eb62cbbSBarry Smith 
3911eb62cbbSBarry Smith   return 0;
3921eb62cbbSBarry Smith }
3931eb62cbbSBarry Smith 
394416022c9SBarry Smith static int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy)
3951eb62cbbSBarry Smith {
396416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
3971eb62cbbSBarry Smith   int        ierr;
398416022c9SBarry Smith 
39948d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix");
40064119d58SLois Curfman McInnes   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
401416022c9SBarry Smith   ierr = MatMult(a->A,xx,yy); CHKERRQ(ierr);
40264119d58SLois Curfman McInnes   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
403416022c9SBarry Smith   ierr = MatMultAdd(a->B,a->lvec,yy,yy); CHKERRQ(ierr);
4041eb62cbbSBarry Smith   return 0;
4051eb62cbbSBarry Smith }
4061eb62cbbSBarry Smith 
407416022c9SBarry Smith static int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
408da3a660dSBarry Smith {
409416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
410da3a660dSBarry Smith   int        ierr;
41148d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix");
41264119d58SLois Curfman McInnes   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
413416022c9SBarry Smith   ierr = MatMultAdd(a->A,xx,yy,zz); CHKERRQ(ierr);
41464119d58SLois Curfman McInnes   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
415416022c9SBarry Smith   ierr = MatMultAdd(a->B,a->lvec,zz,zz); CHKERRQ(ierr);
416da3a660dSBarry Smith   return 0;
417da3a660dSBarry Smith }
418da3a660dSBarry Smith 
419416022c9SBarry Smith static int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy)
420da3a660dSBarry Smith {
421416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
422da3a660dSBarry Smith   int        ierr;
423da3a660dSBarry Smith 
42448d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMulTrans_MPIAIJ:must assemble matrix");
425da3a660dSBarry Smith   /* do nondiagonal part */
426416022c9SBarry Smith   ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr);
427da3a660dSBarry Smith   /* send it on its way */
428416022c9SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,
42964119d58SLois Curfman McInnes                 (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
430da3a660dSBarry Smith   /* do local part */
431416022c9SBarry Smith   ierr = MatMultTrans(a->A,xx,yy); CHKERRQ(ierr);
432da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
433da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
434da3a660dSBarry Smith   /* but is not perhaps always true. */
435416022c9SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,
43664119d58SLois Curfman McInnes                   (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
437da3a660dSBarry Smith   return 0;
438da3a660dSBarry Smith }
439da3a660dSBarry Smith 
440416022c9SBarry Smith static int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
441da3a660dSBarry Smith {
442416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
443da3a660dSBarry Smith   int        ierr;
444da3a660dSBarry Smith 
44548d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatMulTransAdd_MPIAIJ:must assemble matrix");
446da3a660dSBarry Smith   /* do nondiagonal part */
447416022c9SBarry Smith   ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr);
448da3a660dSBarry Smith   /* send it on its way */
449416022c9SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,
45064119d58SLois Curfman McInnes                  (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
451da3a660dSBarry Smith   /* do local part */
452416022c9SBarry Smith   ierr = MatMultTransAdd(a->A,xx,yy,zz); CHKERRQ(ierr);
453da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
454da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
455da3a660dSBarry Smith   /* but is not perhaps always true. */
456416022c9SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,
45764119d58SLois Curfman McInnes                   (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
458da3a660dSBarry Smith   return 0;
459da3a660dSBarry Smith }
460da3a660dSBarry Smith 
4611eb62cbbSBarry Smith /*
4621eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
4631eb62cbbSBarry Smith    diagonal block
4641eb62cbbSBarry Smith */
465416022c9SBarry Smith static int MatGetDiagonal_MPIAIJ(Mat A,Vec v)
4661eb62cbbSBarry Smith {
467416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
46848d91487SBarry Smith   if (!a->assembled) SETERRQ(1,"MatGetDiag_MPIAIJ:must assemble matrix");
469416022c9SBarry Smith   return MatGetDiagonal(a->A,v);
4701eb62cbbSBarry Smith }
4711eb62cbbSBarry Smith 
47244a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj)
4731eb62cbbSBarry Smith {
4741eb62cbbSBarry Smith   Mat        mat = (Mat) obj;
47544a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
4761eb62cbbSBarry Smith   int        ierr;
477a5a9c739SBarry Smith #if defined(PETSC_LOG)
4786e35fa57SLois Curfman McInnes   PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N);
479a5a9c739SBarry Smith #endif
48078b31e54SBarry Smith   PETSCFREE(aij->rowners);
48178b31e54SBarry Smith   ierr = MatDestroy(aij->A); CHKERRQ(ierr);
48278b31e54SBarry Smith   ierr = MatDestroy(aij->B); CHKERRQ(ierr);
48378b31e54SBarry Smith   if (aij->colmap) PETSCFREE(aij->colmap);
48478b31e54SBarry Smith   if (aij->garray) PETSCFREE(aij->garray);
4851eb62cbbSBarry Smith   if (aij->lvec)   VecDestroy(aij->lvec);
486a56f8943SBarry Smith   if (aij->Mvctx)  VecScatterDestroy(aij->Mvctx);
48778b31e54SBarry Smith   PETSCFREE(aij);
488a5a9c739SBarry Smith   PLogObjectDestroy(mat);
489a5a9c739SBarry Smith   PETSCHEADERDESTROY(mat);
4901eb62cbbSBarry Smith   return 0;
4911eb62cbbSBarry Smith }
4927857610eSBarry Smith #include "draw.h"
493b16a3bb1SBarry Smith #include "pinclude/pviewer.h"
494ee50ffe9SBarry Smith 
495416022c9SBarry Smith static int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer)
4961eb62cbbSBarry Smith {
497416022c9SBarry Smith   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
498416022c9SBarry Smith   int         ierr;
499416022c9SBarry Smith 
50017699dbbSLois Curfman McInnes   if (aij->size == 1) {
501416022c9SBarry Smith     ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
502416022c9SBarry Smith   }
503a523beb4SLois Curfman McInnes   else SETERRQ(1,"MatView_MPIAIJ_Binary:Only uniprocessor output supported");
504416022c9SBarry Smith   return 0;
505416022c9SBarry Smith }
506416022c9SBarry Smith 
507416022c9SBarry Smith static int MatView_MPIAIJ_ASCIIorDraw(Mat mat,Viewer viewer)
508416022c9SBarry Smith {
50944a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
510dbb450caSBarry Smith   Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data;
511a56f8943SBarry Smith   int         ierr, format,shift = C->indexshift,rank;
512d13ab20cSBarry Smith   PetscObject vobj = (PetscObject) viewer;
513d636dbe3SBarry Smith   FILE        *fd;
514416022c9SBarry Smith 
515416022c9SBarry Smith   if (vobj->type == ASCII_FILE_VIEWER || vobj->type == ASCII_FILES_VIEWER) {
516416022c9SBarry Smith     ierr = ViewerFileGetFormat_Private(viewer,&format);
517*08480c60SBarry Smith     if (format == FILE_FORMAT_INFO_DETAILED) {
518a56f8943SBarry Smith       int nz,nzalloc,mem;
519a56f8943SBarry Smith       MPI_Comm_rank(mat->comm,&rank);
520a56f8943SBarry Smith       ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr);
521a56f8943SBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&nz,&nzalloc,&mem);
522a56f8943SBarry Smith       MPIU_Seq_begin(mat->comm,1);
523a56f8943SBarry Smith       fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d \n",rank,aij->m,nz,
524a56f8943SBarry Smith                 nzalloc,mem);
525*08480c60SBarry Smith       ierr = MatGetInfo(aij->A,MAT_LOCAL,&nz,&nzalloc,&mem);
526*08480c60SBarry Smith       fprintf(fd,"[%d] on diagonal nz %d \n",rank,nz);
527*08480c60SBarry Smith       ierr = MatGetInfo(aij->B,MAT_LOCAL,&nz,&nzalloc,&mem);
528*08480c60SBarry Smith       fprintf(fd,"[%d] off diagonal nz %d \n",rank,nz);
529a56f8943SBarry Smith       fflush(fd);
530a56f8943SBarry Smith       MPIU_Seq_end(mat->comm,1);
531a56f8943SBarry Smith       ierr = VecScatterView(aij->Mvctx,viewer);
532416022c9SBarry Smith       return 0;
533416022c9SBarry Smith     }
534*08480c60SBarry Smith     else if (format == FILE_FORMAT_INFO) {
535*08480c60SBarry Smith       return 0;
536*08480c60SBarry Smith     }
537416022c9SBarry Smith   }
538416022c9SBarry Smith 
539416022c9SBarry Smith   if (vobj->type == ASCII_FILE_VIEWER) {
540d636dbe3SBarry Smith     ierr = ViewerFileGetPointer_Private(viewer,&fd); CHKERRQ(ierr);
5417f813858SBarry Smith     MPIU_Seq_begin(mat->comm,1);
542d13ab20cSBarry Smith     fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n",
54317699dbbSLois Curfman McInnes            aij->rank,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart,
5441eb62cbbSBarry Smith            aij->cend);
54578b31e54SBarry Smith     ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
54678b31e54SBarry Smith     ierr = MatView(aij->B,viewer); CHKERRQ(ierr);
547d13ab20cSBarry Smith     fflush(fd);
5487f813858SBarry Smith     MPIU_Seq_end(mat->comm,1);
549d13ab20cSBarry Smith   }
550416022c9SBarry Smith   else {
551a56f8943SBarry Smith     int size = aij->size;
552a56f8943SBarry Smith     rank = aij->rank;
55317699dbbSLois Curfman McInnes     if (size == 1) {
55478b31e54SBarry Smith       ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
55595373324SBarry Smith     }
55695373324SBarry Smith     else {
55795373324SBarry Smith       /* assemble the entire matrix onto first processor. */
55895373324SBarry Smith       Mat         A;
559ec8511deSBarry Smith       Mat_SeqAIJ *Aloc;
5602eb8c8abSBarry Smith       int         M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct;
56195373324SBarry Smith       Scalar      *a;
5622ee70a88SLois Curfman McInnes 
56317699dbbSLois Curfman McInnes       if (!rank) {
564416022c9SBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,0,0,0,&A);CHKERRQ(ierr);
56595373324SBarry Smith       }
56695373324SBarry Smith       else {
567416022c9SBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,0,0,0,&A);CHKERRQ(ierr);
56895373324SBarry Smith       }
569464493b3SBarry Smith       PLogObjectParent(mat,A);
570416022c9SBarry Smith 
57195373324SBarry Smith 
57295373324SBarry Smith       /* copy over the A part */
573ec8511deSBarry Smith       Aloc = (Mat_SeqAIJ*) aij->A->data;
5742ee70a88SLois Curfman McInnes       m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
57595373324SBarry Smith       row = aij->rstart;
576dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;}
57795373324SBarry Smith       for ( i=0; i<m; i++ ) {
578416022c9SBarry Smith         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr);
57995373324SBarry Smith         row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
58095373324SBarry Smith       }
5812ee70a88SLois Curfman McInnes       aj = Aloc->j;
582dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;}
58395373324SBarry Smith 
58495373324SBarry Smith       /* copy over the B part */
585ec8511deSBarry Smith       Aloc = (Mat_SeqAIJ*) aij->B->data;
5862ee70a88SLois Curfman McInnes       m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
58795373324SBarry Smith       row = aij->rstart;
58878b31e54SBarry Smith       ct = cols = (int *) PETSCMALLOC( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols);
589dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];}
59095373324SBarry Smith       for ( i=0; i<m; i++ ) {
591416022c9SBarry Smith         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr);
59295373324SBarry Smith         row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
59395373324SBarry Smith       }
59478b31e54SBarry Smith       PETSCFREE(ct);
59578b31e54SBarry Smith       ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
59678b31e54SBarry Smith       ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
59717699dbbSLois Curfman McInnes       if (!rank) {
59878b31e54SBarry Smith         ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr);
59995373324SBarry Smith       }
60078b31e54SBarry Smith       ierr = MatDestroy(A); CHKERRQ(ierr);
60195373324SBarry Smith     }
60295373324SBarry Smith   }
6031eb62cbbSBarry Smith   return 0;
6041eb62cbbSBarry Smith }
6051eb62cbbSBarry Smith 
606416022c9SBarry Smith static int MatView_MPIAIJ(PetscObject obj,Viewer viewer)
607416022c9SBarry Smith {
608416022c9SBarry Smith   Mat         mat = (Mat) obj;
609416022c9SBarry Smith   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
610416022c9SBarry Smith   int         ierr;
611416022c9SBarry Smith   PetscObject vobj = (PetscObject) viewer;
612416022c9SBarry Smith 
61348d91487SBarry Smith   if (!aij->assembled) SETERRQ(1,"MatView_MPIAIJ:must assemble matrix");
614416022c9SBarry Smith   if (!viewer) {
615416022c9SBarry Smith     viewer = STDOUT_VIEWER_SELF; vobj = (PetscObject) viewer;
616416022c9SBarry Smith   }
617416022c9SBarry Smith   if (vobj->cookie == DRAW_COOKIE && vobj->type == NULLWINDOW) return 0;
618416022c9SBarry Smith   else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILE_VIEWER) {
619416022c9SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr);
620416022c9SBarry Smith   }
621416022c9SBarry Smith   else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILES_VIEWER) {
622416022c9SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr);
623416022c9SBarry Smith   }
624416022c9SBarry Smith   else if (vobj->cookie == DRAW_COOKIE) {
625416022c9SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraw(mat,viewer); CHKERRQ(ierr);
626416022c9SBarry Smith   }
627416022c9SBarry Smith   else if (vobj->type == BINARY_FILE_VIEWER) {
628416022c9SBarry Smith     return MatView_MPIAIJ_Binary(mat,viewer);
629416022c9SBarry Smith   }
630416022c9SBarry Smith   return 0;
631416022c9SBarry Smith }
632416022c9SBarry Smith 
633ec8511deSBarry Smith extern int MatMarkDiag_SeqAIJ(Mat);
6341eb62cbbSBarry Smith /*
6351eb62cbbSBarry Smith     This has to provide several versions.
6361eb62cbbSBarry Smith 
6371eb62cbbSBarry Smith      1) per sequential
6381eb62cbbSBarry Smith      2) a) use only local smoothing updating outer values only once.
6391eb62cbbSBarry Smith         b) local smoothing updating outer values each inner iteration
640d6dfbf8fSBarry Smith      3) color updating out values betwen colors.
6411eb62cbbSBarry Smith */
642fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag,
643dbb450caSBarry Smith                            double fshift,int its,Vec xx)
6448a729477SBarry Smith {
64544a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
646d6dfbf8fSBarry Smith   Mat        AA = mat->A, BB = mat->B;
647ec8511deSBarry Smith   Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data;
6486abc6512SBarry Smith   Scalar     zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts;
6496abc6512SBarry Smith   int        ierr,*idx, *diag;
650416022c9SBarry Smith   int        n = mat->n, m = mat->m, i,shift = A->indexshift;
651da3a660dSBarry Smith   Vec        tt;
6528a729477SBarry Smith 
65348d91487SBarry Smith   if (!mat->assembled) SETERRQ(1,"MatRelax_MPIAIJ:must assemble matrix");
6541eb62cbbSBarry Smith 
655d6dfbf8fSBarry Smith   VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls);
656dbb450caSBarry Smith   xs = x + shift; /* shift by one for index start of 1 */
657dbb450caSBarry Smith   ls = ls + shift;
658ec8511deSBarry Smith   if (!A->diag) {if ((ierr = MatMarkDiag_SeqAIJ(AA))) return ierr;}
659d6dfbf8fSBarry Smith   diag = A->diag;
660acb40c82SBarry Smith   if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) {
66148d91487SBarry Smith     SETERRQ(1,"MatRelax_MPIAIJ:Option not supported");
662acb40c82SBarry Smith   }
663da3a660dSBarry Smith   if (flag & SOR_EISENSTAT) {
664da3a660dSBarry Smith     /* Let  A = L + U + D; where L is lower trianglar,
665da3a660dSBarry Smith     U is upper triangular, E is diagonal; This routine applies
666da3a660dSBarry Smith 
667da3a660dSBarry Smith             (L + E)^{-1} A (U + E)^{-1}
668da3a660dSBarry Smith 
669da3a660dSBarry Smith     to a vector efficiently using Eisenstat's trick. This is for
670da3a660dSBarry Smith     the case of SSOR preconditioner, so E is D/omega where omega
671da3a660dSBarry Smith     is the relaxation factor.
672da3a660dSBarry Smith     */
67378b31e54SBarry Smith     ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr);
674464493b3SBarry Smith     PLogObjectParent(matin,tt);
675da3a660dSBarry Smith     VecGetArray(tt,&t);
676da3a660dSBarry Smith     scale = (2.0/omega) - 1.0;
677da3a660dSBarry Smith     /*  x = (E + U)^{-1} b */
678da3a660dSBarry Smith     VecSet(&zero,mat->lvec);
67964119d58SLois Curfman McInnes     ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
68078b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
681da3a660dSBarry Smith     for ( i=m-1; i>-1; i-- ) {
682da3a660dSBarry Smith       n    = A->i[i+1] - diag[i] - 1;
683dbb450caSBarry Smith       idx  = A->j + diag[i] + !shift;
684dbb450caSBarry Smith       v    = A->a + diag[i] + !shift;
685da3a660dSBarry Smith       sum  = b[i];
686da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,xs,v,idx,n);
687dbb450caSBarry Smith       d    = fshift + A->a[diag[i]+shift];
688da3a660dSBarry Smith       n    = B->i[i+1] - B->i[i];
689dbb450caSBarry Smith       idx  = B->j + B->i[i] + shift;
690dbb450caSBarry Smith       v    = B->a + B->i[i] + shift;
691da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ls,v,idx,n);
692da3a660dSBarry Smith       x[i] = omega*(sum/d);
693da3a660dSBarry Smith     }
69464119d58SLois Curfman McInnes     ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
69578b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
696da3a660dSBarry Smith 
697da3a660dSBarry Smith     /*  t = b - (2*E - D)x */
698da3a660dSBarry Smith     v = A->a;
699dbb450caSBarry Smith     for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ + shift])*x[i]; }
700da3a660dSBarry Smith 
701da3a660dSBarry Smith     /*  t = (E + L)^{-1}t */
702dbb450caSBarry Smith     ts = t + shift; /* shifted by one for index start of a or mat->j*/
703da3a660dSBarry Smith     diag = A->diag;
704da3a660dSBarry Smith     VecSet(&zero,mat->lvec);
70564119d58SLois Curfman McInnes     ierr = VecPipelineBegin(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
70678b31e54SBarry Smith                                                  mat->Mvctx); CHKERRQ(ierr);
707da3a660dSBarry Smith     for ( i=0; i<m; i++ ) {
708da3a660dSBarry Smith       n    = diag[i] - A->i[i];
709dbb450caSBarry Smith       idx  = A->j + A->i[i] + shift;
710dbb450caSBarry Smith       v    = A->a + A->i[i] + shift;
711da3a660dSBarry Smith       sum  = t[i];
712da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ts,v,idx,n);
713dbb450caSBarry Smith       d    = fshift + A->a[diag[i]+shift];
714da3a660dSBarry Smith       n    = B->i[i+1] - B->i[i];
715dbb450caSBarry Smith       idx  = B->j + B->i[i] + shift;
716dbb450caSBarry Smith       v    = B->a + B->i[i] + shift;
717da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ls,v,idx,n);
718da3a660dSBarry Smith       t[i] = omega*(sum/d);
719da3a660dSBarry Smith     }
72064119d58SLois Curfman McInnes     ierr = VecPipelineEnd(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
72178b31e54SBarry Smith                                                     mat->Mvctx); CHKERRQ(ierr);
722da3a660dSBarry Smith     /*  x = x + t */
723da3a660dSBarry Smith     for ( i=0; i<m; i++ ) { x[i] += t[i]; }
724da3a660dSBarry Smith     VecDestroy(tt);
725da3a660dSBarry Smith     return 0;
726da3a660dSBarry Smith   }
727da3a660dSBarry Smith 
7281eb62cbbSBarry Smith 
729d6dfbf8fSBarry Smith   if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){
730da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
731da3a660dSBarry Smith       VecSet(&zero,mat->lvec); VecSet(&zero,xx);
732da3a660dSBarry Smith     }
733da3a660dSBarry Smith     else {
73464119d58SLois Curfman McInnes       ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
73578b31e54SBarry Smith       CHKERRQ(ierr);
73664119d58SLois Curfman McInnes       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
73778b31e54SBarry Smith       CHKERRQ(ierr);
738da3a660dSBarry Smith     }
739d6dfbf8fSBarry Smith     while (its--) {
740d6dfbf8fSBarry Smith       /* go down through the rows */
74164119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
74278b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
743d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
744d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
745dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
746dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
747d6dfbf8fSBarry Smith         sum  = b[i];
748d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
749dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
750d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
751dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
752dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
753d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
754d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
755d6dfbf8fSBarry Smith       }
75664119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
75778b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
758d6dfbf8fSBarry Smith       /* come up through the rows */
75964119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
76078b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
761d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
762d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
763dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
764dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
765d6dfbf8fSBarry Smith         sum  = b[i];
766d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
767dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
768d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
769dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
770dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
771d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
772d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
773d6dfbf8fSBarry Smith       }
77464119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
77578b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
776d6dfbf8fSBarry Smith     }
777d6dfbf8fSBarry Smith   }
778d6dfbf8fSBarry Smith   else if (flag & SOR_FORWARD_SWEEP){
779da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
780da3a660dSBarry Smith       VecSet(&zero,mat->lvec);
78164119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
78278b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
783da3a660dSBarry Smith       for ( i=0; i<m; i++ ) {
784da3a660dSBarry Smith         n    = diag[i] - A->i[i];
785dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
786dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
787da3a660dSBarry Smith         sum  = b[i];
788da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
789dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
790da3a660dSBarry Smith         n    = B->i[i+1] - B->i[i];
791dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
792dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
793da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
794da3a660dSBarry Smith         x[i] = omega*(sum/d);
795da3a660dSBarry Smith       }
79664119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
79778b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
798da3a660dSBarry Smith       its--;
799da3a660dSBarry Smith     }
800d6dfbf8fSBarry Smith     while (its--) {
80164119d58SLois Curfman McInnes       ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
80278b31e54SBarry Smith       CHKERRQ(ierr);
80364119d58SLois Curfman McInnes       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx);
80478b31e54SBarry Smith       CHKERRQ(ierr);
80564119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
80678b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
807d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
808d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
809dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
810dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
811d6dfbf8fSBarry Smith         sum  = b[i];
812d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
813dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
814d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
815dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
816dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
817d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
818d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
819d6dfbf8fSBarry Smith       }
82064119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN,
82178b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
822d6dfbf8fSBarry Smith     }
823d6dfbf8fSBarry Smith   }
824d6dfbf8fSBarry Smith   else if (flag & SOR_BACKWARD_SWEEP){
825da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
826da3a660dSBarry Smith       VecSet(&zero,mat->lvec);
82764119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
82878b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
829da3a660dSBarry Smith       for ( i=m-1; i>-1; i-- ) {
830da3a660dSBarry Smith         n    = A->i[i+1] - diag[i] - 1;
831dbb450caSBarry Smith         idx  = A->j + diag[i] + !shift;
832dbb450caSBarry Smith         v    = A->a + diag[i] + !shift;
833da3a660dSBarry Smith         sum  = b[i];
834da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
835dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
836da3a660dSBarry Smith         n    = B->i[i+1] - B->i[i];
837dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
838dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
839da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
840da3a660dSBarry Smith         x[i] = omega*(sum/d);
841da3a660dSBarry Smith       }
84264119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
84378b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
844da3a660dSBarry Smith       its--;
845da3a660dSBarry Smith     }
846d6dfbf8fSBarry Smith     while (its--) {
84764119d58SLois Curfman McInnes       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN,
84878b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
84964119d58SLois Curfman McInnes       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN,
85078b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
85164119d58SLois Curfman McInnes       ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
85278b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
853d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
854d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
855dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
856dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
857d6dfbf8fSBarry Smith         sum  = b[i];
858d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
859dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
860d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
861dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
862dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
863d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
864d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
865d6dfbf8fSBarry Smith       }
86664119d58SLois Curfman McInnes       ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP,
86778b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
868d6dfbf8fSBarry Smith     }
869d6dfbf8fSBarry Smith   }
870d6dfbf8fSBarry Smith   else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
871da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
872dbb450caSBarry Smith       return MatRelax(mat->A,bb,omega,flag,fshift,its,xx);
873da3a660dSBarry Smith     }
87464119d58SLois Curfman McInnes     ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
87578b31e54SBarry Smith     CHKERRQ(ierr);
87664119d58SLois Curfman McInnes     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
87778b31e54SBarry Smith     CHKERRQ(ierr);
878d6dfbf8fSBarry Smith     while (its--) {
879d6dfbf8fSBarry Smith       /* go down through the rows */
880d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
881d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
882dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
883dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
884d6dfbf8fSBarry Smith         sum  = b[i];
885d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
886dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
887d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
888dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
889dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
890d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
891d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
892d6dfbf8fSBarry Smith       }
893d6dfbf8fSBarry Smith       /* come up through the rows */
894d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
895d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
896dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
897dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
898d6dfbf8fSBarry Smith         sum  = b[i];
899d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
900dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
901d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
902dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
903dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
904d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
905d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
906d6dfbf8fSBarry Smith       }
907d6dfbf8fSBarry Smith     }
908d6dfbf8fSBarry Smith   }
909d6dfbf8fSBarry Smith   else if (flag & SOR_LOCAL_FORWARD_SWEEP){
910da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
911dbb450caSBarry Smith       return MatRelax(mat->A,bb,omega,flag,fshift,its,xx);
912da3a660dSBarry Smith     }
91364119d58SLois Curfman McInnes     ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
91478b31e54SBarry Smith     CHKERRQ(ierr);
91564119d58SLois Curfman McInnes     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx);
91678b31e54SBarry Smith     CHKERRQ(ierr);
917d6dfbf8fSBarry Smith     while (its--) {
918d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
919d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
920dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
921dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
922d6dfbf8fSBarry Smith         sum  = b[i];
923d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
924dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
925d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
926dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
927dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
928d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
929d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
930d6dfbf8fSBarry Smith       }
931d6dfbf8fSBarry Smith     }
932d6dfbf8fSBarry Smith   }
933d6dfbf8fSBarry Smith   else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
934da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
935dbb450caSBarry Smith       return MatRelax(mat->A,bb,omega,flag,fshift,its,xx);
936da3a660dSBarry Smith     }
93764119d58SLois Curfman McInnes     ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,
93878b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
93964119d58SLois Curfman McInnes     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,
94078b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
941d6dfbf8fSBarry Smith     while (its--) {
942d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
943d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
944dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
945dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
946d6dfbf8fSBarry Smith         sum  = b[i];
947d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
948dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
949d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
950dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
951dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
952d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
953d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
954d6dfbf8fSBarry Smith       }
955d6dfbf8fSBarry Smith     }
956d6dfbf8fSBarry Smith   }
9578a729477SBarry Smith   return 0;
9588a729477SBarry Smith }
959a66be287SLois Curfman McInnes 
960fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz,
961fc76ce87SLois Curfman McInnes                              int *nzalloc,int *mem)
962a66be287SLois Curfman McInnes {
963a66be287SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
964a66be287SLois Curfman McInnes   Mat        A = mat->A, B = mat->B;
965a66be287SLois Curfman McInnes   int        ierr, isend[3], irecv[3], nzA, nzallocA, memA;
966a66be287SLois Curfman McInnes 
96778b31e54SBarry Smith   ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr);
96878b31e54SBarry Smith   ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr);
969a66be287SLois Curfman McInnes   isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA;
970a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
971a66be287SLois Curfman McInnes     *nz = isend[0]; *nzalloc = isend[1]; *mem = isend[2];
972a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
973d65a2f8fSBarry Smith     MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_MAX,matin->comm);
974a66be287SLois Curfman McInnes     *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2];
975a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
976d65a2f8fSBarry Smith     MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_SUM,matin->comm);
977a66be287SLois Curfman McInnes     *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2];
978a66be287SLois Curfman McInnes   }
979a66be287SLois Curfman McInnes   return 0;
980a66be287SLois Curfman McInnes }
981a66be287SLois Curfman McInnes 
982299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*);
983299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*);
984299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double);
985299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *);
986299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec);
987299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec);
988299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec);
989299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec);
990299609e3SLois Curfman McInnes 
991416022c9SBarry Smith static int MatSetOption_MPIAIJ(Mat A,MatOption op)
992c74985f6SBarry Smith {
993c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
994c74985f6SBarry Smith 
995c0bbcb79SLois Curfman McInnes   if (op == NO_NEW_NONZERO_LOCATIONS ||
996c0bbcb79SLois Curfman McInnes       op == YES_NEW_NONZERO_LOCATIONS ||
997c0bbcb79SLois Curfman McInnes       op == COLUMNS_SORTED ||
998c0bbcb79SLois Curfman McInnes       op == ROW_ORIENTED) {
999c0bbcb79SLois Curfman McInnes         MatSetOption(a->A,op);
1000c0bbcb79SLois Curfman McInnes         MatSetOption(a->B,op);
1001c74985f6SBarry Smith   }
1002c0bbcb79SLois Curfman McInnes   else if (op == ROWS_SORTED ||
1003c0bbcb79SLois Curfman McInnes            op == SYMMETRIC_MATRIX ||
1004c0bbcb79SLois Curfman McInnes            op == STRUCTURALLY_SYMMETRIC_MATRIX ||
1005c0bbcb79SLois Curfman McInnes            op == YES_NEW_DIAGONALS)
1006c0bbcb79SLois Curfman McInnes     PLogInfo((PetscObject)A,"Info:MatSetOption_MPIAIJ:Option ignored\n");
1007bbb6d6a8SBarry Smith   else if (op == COLUMN_ORIENTED)
10084d39ef84SLois Curfman McInnes     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:COLUMN_ORIENTED");}
1009c0bbcb79SLois Curfman McInnes   else if (op == NO_NEW_DIAGONALS)
10104d39ef84SLois Curfman McInnes     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:NO_NEW_DIAGONALS");}
1011c0bbcb79SLois Curfman McInnes   else
10124d39ef84SLois Curfman McInnes     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:unknown option");}
1013c74985f6SBarry Smith   return 0;
1014c74985f6SBarry Smith }
1015c74985f6SBarry Smith 
1016d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n)
1017c74985f6SBarry Smith {
101844a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1019c74985f6SBarry Smith   *m = mat->M; *n = mat->N;
1020c74985f6SBarry Smith   return 0;
1021c74985f6SBarry Smith }
1022c74985f6SBarry Smith 
1023d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n)
1024c74985f6SBarry Smith {
102544a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1026b7c46309SBarry Smith   *m = mat->m; *n = mat->N;
1027c74985f6SBarry Smith   return 0;
1028c74985f6SBarry Smith }
1029c74985f6SBarry Smith 
1030d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n)
1031c74985f6SBarry Smith {
103244a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1033c74985f6SBarry Smith   *m = mat->rstart; *n = mat->rend;
1034c74985f6SBarry Smith   return 0;
1035c74985f6SBarry Smith }
1036c74985f6SBarry Smith 
103739e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v)
103839e00950SLois Curfman McInnes {
1039154123eaSLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1040154123eaSLois Curfman McInnes   Scalar     *vworkA, *vworkB, **pvA, **pvB;
1041154123eaSLois Curfman McInnes   int        i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart;
1042154123eaSLois Curfman McInnes   int        nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend;
104339e00950SLois Curfman McInnes 
1044416022c9SBarry Smith   if (row < rstart || row >= rend) SETERRQ(1,"MatGetRow_MPIAIJ:only local rows")
1045abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
104639e00950SLois Curfman McInnes 
1047154123eaSLois Curfman McInnes   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1048154123eaSLois Curfman McInnes   if (!v)   {pvA = 0; pvB = 0;}
1049154123eaSLois Curfman McInnes   if (!idx) {pcA = 0; if (!v) pcB = 0;}
105078b31e54SBarry Smith   ierr = MatGetRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
105178b31e54SBarry Smith   ierr = MatGetRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
1052154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1053154123eaSLois Curfman McInnes 
1054154123eaSLois Curfman McInnes   if (v  || idx) {
1055154123eaSLois Curfman McInnes     if (nztot) {
1056154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1057299609e3SLois Curfman McInnes       int imark;
105848b35521SBarry Smith       if (mat->assembled) {
1059154123eaSLois Curfman McInnes         for (i=0; i<nzB; i++) cworkB[i] = mat->garray[cworkB[i]];
106048b35521SBarry Smith       }
1061154123eaSLois Curfman McInnes       if (v) {
106278b31e54SBarry Smith         *v = (Scalar *) PETSCMALLOC( (nztot)*sizeof(Scalar) ); CHKPTRQ(*v);
106339e00950SLois Curfman McInnes         for ( i=0; i<nzB; i++ ) {
1064154123eaSLois Curfman McInnes           if (cworkB[i] < cstart)   (*v)[i] = vworkB[i];
1065154123eaSLois Curfman McInnes           else break;
1066154123eaSLois Curfman McInnes         }
1067154123eaSLois Curfman McInnes         imark = i;
1068154123eaSLois Curfman McInnes         for ( i=0; i<nzA; i++ )     (*v)[imark+i] = vworkA[i];
1069299609e3SLois Curfman McInnes         for ( i=imark; i<nzB; i++ ) (*v)[nzA+i] = vworkB[i];
1070154123eaSLois Curfman McInnes       }
1071154123eaSLois Curfman McInnes       if (idx) {
107278b31e54SBarry Smith         *idx = (int *) PETSCMALLOC( (nztot)*sizeof(int) ); CHKPTRQ(*idx);
1073154123eaSLois Curfman McInnes         for (i=0; i<nzA; i++) cworkA[i] += cstart;
1074154123eaSLois Curfman McInnes         for ( i=0; i<nzB; i++ ) {
1075154123eaSLois Curfman McInnes           if (cworkB[i] < cstart)   (*idx)[i] = cworkB[i];
1076154123eaSLois Curfman McInnes           else break;
1077154123eaSLois Curfman McInnes         }
1078154123eaSLois Curfman McInnes         imark = i;
1079154123eaSLois Curfman McInnes         for ( i=0; i<nzA; i++ )     (*idx)[imark+i] = cworkA[i];
1080299609e3SLois Curfman McInnes         for ( i=imark; i<nzB; i++ ) (*idx)[nzA+i] = cworkB[i];
108139e00950SLois Curfman McInnes       }
108239e00950SLois Curfman McInnes     }
108339e00950SLois Curfman McInnes     else {*idx = 0; *v=0;}
1084154123eaSLois Curfman McInnes   }
108539e00950SLois Curfman McInnes   *nz = nztot;
108678b31e54SBarry Smith   ierr = MatRestoreRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
108778b31e54SBarry Smith   ierr = MatRestoreRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
108839e00950SLois Curfman McInnes   return 0;
108939e00950SLois Curfman McInnes }
109039e00950SLois Curfman McInnes 
109139e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v)
109239e00950SLois Curfman McInnes {
109378b31e54SBarry Smith   if (idx) PETSCFREE(*idx);
109478b31e54SBarry Smith   if (v) PETSCFREE(*v);
109539e00950SLois Curfman McInnes   return 0;
109639e00950SLois Curfman McInnes }
109739e00950SLois Curfman McInnes 
1098855ac2c5SLois Curfman McInnes static int MatNorm_MPIAIJ(Mat mat,MatNormType type,double *norm)
1099855ac2c5SLois Curfman McInnes {
1100855ac2c5SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
1101ec8511deSBarry Smith   Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data;
1102416022c9SBarry Smith   int        ierr, i, j, cstart = aij->cstart,shift = amat->indexshift;
1103416022c9SBarry Smith   double     sum = 0.0;
110404ca555eSLois Curfman McInnes   Scalar     *v;
110504ca555eSLois Curfman McInnes 
1106416022c9SBarry Smith   if (!aij->assembled) SETERRQ(1,"MatNorm_MPIAIJ:Must assemble matrix");
110717699dbbSLois Curfman McInnes   if (aij->size == 1) {
110814183eadSLois Curfman McInnes     ierr =  MatNorm(aij->A,type,norm); CHKERRQ(ierr);
110937fa93a5SLois Curfman McInnes   } else {
111004ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
111104ca555eSLois Curfman McInnes       v = amat->a;
111204ca555eSLois Curfman McInnes       for (i=0; i<amat->nz; i++ ) {
111304ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
111404ca555eSLois Curfman McInnes         sum += real(conj(*v)*(*v)); v++;
111504ca555eSLois Curfman McInnes #else
111604ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
111704ca555eSLois Curfman McInnes #endif
111804ca555eSLois Curfman McInnes       }
111904ca555eSLois Curfman McInnes       v = bmat->a;
112004ca555eSLois Curfman McInnes       for (i=0; i<bmat->nz; i++ ) {
112104ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
112204ca555eSLois Curfman McInnes         sum += real(conj(*v)*(*v)); v++;
112304ca555eSLois Curfman McInnes #else
112404ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
112504ca555eSLois Curfman McInnes #endif
112604ca555eSLois Curfman McInnes       }
112704ca555eSLois Curfman McInnes       MPI_Allreduce((void*)&sum,(void*)norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);
112804ca555eSLois Curfman McInnes       *norm = sqrt(*norm);
112904ca555eSLois Curfman McInnes     }
113004ca555eSLois Curfman McInnes     else if (type == NORM_1) { /* max column norm */
113104ca555eSLois Curfman McInnes       double *tmp, *tmp2;
113204ca555eSLois Curfman McInnes       int    *jj, *garray = aij->garray;
113304ca555eSLois Curfman McInnes       tmp  = (double *) PETSCMALLOC( aij->N*sizeof(double) ); CHKPTRQ(tmp);
113404ca555eSLois Curfman McInnes       tmp2 = (double *) PETSCMALLOC( aij->N*sizeof(double) ); CHKPTRQ(tmp2);
1135416022c9SBarry Smith       PetscZero(tmp,aij->N*sizeof(double));
113604ca555eSLois Curfman McInnes       *norm = 0.0;
113704ca555eSLois Curfman McInnes       v = amat->a; jj = amat->j;
113804ca555eSLois Curfman McInnes       for ( j=0; j<amat->nz; j++ ) {
113904ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
1140dbb450caSBarry Smith         tmp[cstart + *jj++ + shift] += abs(*v++);
114104ca555eSLois Curfman McInnes #else
1142dbb450caSBarry Smith         tmp[cstart + *jj++ + shift] += fabs(*v++);
114304ca555eSLois Curfman McInnes #endif
114404ca555eSLois Curfman McInnes       }
114504ca555eSLois Curfman McInnes       v = bmat->a; jj = bmat->j;
114604ca555eSLois Curfman McInnes       for ( j=0; j<bmat->nz; j++ ) {
114704ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
1148dbb450caSBarry Smith         tmp[garray[*jj++ + shift]] += abs(*v++);
114904ca555eSLois Curfman McInnes #else
1150dbb450caSBarry Smith         tmp[garray[*jj++ + shift]] += fabs(*v++);
115104ca555eSLois Curfman McInnes #endif
115204ca555eSLois Curfman McInnes       }
115304ca555eSLois Curfman McInnes       MPI_Allreduce((void*)tmp,(void*)tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm);
115404ca555eSLois Curfman McInnes       for ( j=0; j<aij->N; j++ ) {
115504ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
115604ca555eSLois Curfman McInnes       }
115704ca555eSLois Curfman McInnes       PETSCFREE(tmp); PETSCFREE(tmp2);
115804ca555eSLois Curfman McInnes     }
115904ca555eSLois Curfman McInnes     else if (type == NORM_INFINITY) { /* max row norm */
1160515d9167SLois Curfman McInnes       double ntemp = 0.0;
116104ca555eSLois Curfman McInnes       for ( j=0; j<amat->m; j++ ) {
1162dbb450caSBarry Smith         v = amat->a + amat->i[j] + shift;
116304ca555eSLois Curfman McInnes         sum = 0.0;
116404ca555eSLois Curfman McInnes         for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) {
116504ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
116604ca555eSLois Curfman McInnes           sum += abs(*v); v++;
116704ca555eSLois Curfman McInnes #else
116804ca555eSLois Curfman McInnes           sum += fabs(*v); v++;
116904ca555eSLois Curfman McInnes #endif
117004ca555eSLois Curfman McInnes         }
1171dbb450caSBarry Smith         v = bmat->a + bmat->i[j] + shift;
117204ca555eSLois Curfman McInnes         for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) {
117304ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX)
117404ca555eSLois Curfman McInnes           sum += abs(*v); v++;
117504ca555eSLois Curfman McInnes #else
117604ca555eSLois Curfman McInnes           sum += fabs(*v); v++;
117704ca555eSLois Curfman McInnes #endif
117804ca555eSLois Curfman McInnes         }
1179515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
118004ca555eSLois Curfman McInnes       }
1181515d9167SLois Curfman McInnes       MPI_Allreduce((void*)&ntemp,(void*)norm,1,MPI_DOUBLE,MPI_MAX,mat->comm);
118204ca555eSLois Curfman McInnes     }
118304ca555eSLois Curfman McInnes     else {
1184515d9167SLois Curfman McInnes       SETERRQ(1,"MatNorm_MPIAIJ:No support for two norm");
118504ca555eSLois Curfman McInnes     }
118637fa93a5SLois Curfman McInnes   }
1187855ac2c5SLois Curfman McInnes   return 0;
1188855ac2c5SLois Curfman McInnes }
1189855ac2c5SLois Curfman McInnes 
11900de55854SLois Curfman McInnes static int MatTranspose_MPIAIJ(Mat A,Mat *matout)
1191b7c46309SBarry Smith {
1192b7c46309SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
1193dbb450caSBarry Smith   Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data;
1194416022c9SBarry Smith   int        ierr,shift = Aloc->indexshift;
1195416022c9SBarry Smith   Mat        B;
1196b7c46309SBarry Smith   int        M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct;
1197b7c46309SBarry Smith   Scalar     *array;
1198b7c46309SBarry Smith 
1199416022c9SBarry Smith   if (!matout && M != N) SETERRQ(1,"MatTranspose_MPIAIJ:Square only in-place");
1200b7c46309SBarry Smith   ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,0,0,0,&B);
1201b7c46309SBarry Smith   CHKERRQ(ierr);
1202b7c46309SBarry Smith 
1203b7c46309SBarry Smith   /* copy over the A part */
1204ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*) a->A->data;
1205b7c46309SBarry Smith   m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1206b7c46309SBarry Smith   row = a->rstart;
1207dbb450caSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;}
1208b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1209416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1210b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
1211b7c46309SBarry Smith   }
1212b7c46309SBarry Smith   aj = Aloc->j;
1213dbb450caSBarry Smith   for ( i=0; i<ai[m]|+shift; i++ ) {aj[i] -= a->cstart + shift;}
1214b7c46309SBarry Smith 
1215b7c46309SBarry Smith   /* copy over the B part */
1216ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*) a->B->data;
1217b7c46309SBarry Smith   m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1218b7c46309SBarry Smith   row = a->rstart;
12191987afe7SBarry Smith   ct = cols = (int *) PETSCMALLOC( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols);
1220dbb450caSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];}
1221b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1222416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1223b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
1224b7c46309SBarry Smith   }
1225b7c46309SBarry Smith   PETSCFREE(ct);
1226b7c46309SBarry Smith   ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr);
1227b7c46309SBarry Smith   ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr);
12280de55854SLois Curfman McInnes   if (matout) {
12290de55854SLois Curfman McInnes     *matout = B;
12300de55854SLois Curfman McInnes   } else {
12310de55854SLois Curfman McInnes     /* This isn't really an in-place transpose .... but free data structures from a */
12320de55854SLois Curfman McInnes     PETSCFREE(a->rowners);
12330de55854SLois Curfman McInnes     ierr = MatDestroy(a->A); CHKERRQ(ierr);
12340de55854SLois Curfman McInnes     ierr = MatDestroy(a->B); CHKERRQ(ierr);
12350de55854SLois Curfman McInnes     if (a->colmap) PETSCFREE(a->colmap);
12360de55854SLois Curfman McInnes     if (a->garray) PETSCFREE(a->garray);
12370de55854SLois Curfman McInnes     if (a->lvec) VecDestroy(a->lvec);
1238a56f8943SBarry Smith     if (a->Mvctx) VecScatterDestroy(a->Mvctx);
12390de55854SLois Curfman McInnes     PETSCFREE(a);
1240416022c9SBarry Smith     PetscMemcpy(A,B,sizeof(struct _Mat));
12410de55854SLois Curfman McInnes     PETSCHEADERDESTROY(B);
12420de55854SLois Curfman McInnes   }
1243b7c46309SBarry Smith   return 0;
1244b7c46309SBarry Smith }
1245b7c46309SBarry Smith 
1246fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *);
1247a56f8943SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat,Mat *,int);
1248d6dfbf8fSBarry Smith 
12498a729477SBarry Smith /* -------------------------------------------------------------------*/
12502ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ,
125139e00950SLois Curfman McInnes        MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ,
125244a69424SLois Curfman McInnes        MatMult_MPIAIJ,MatMultAdd_MPIAIJ,
125344a69424SLois Curfman McInnes        MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ,
1254299609e3SLois Curfman McInnes        MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ,
1255299609e3SLois Curfman McInnes        MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ,
1256299609e3SLois Curfman McInnes        MatLUFactor_MPIAIJ,0,
125744a69424SLois Curfman McInnes        MatRelax_MPIAIJ,
1258b7c46309SBarry Smith        MatTranspose_MPIAIJ,
1259a66be287SLois Curfman McInnes        MatGetInfo_MPIAIJ,0,
1260855ac2c5SLois Curfman McInnes        MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ,
1261ee50ffe9SBarry Smith        MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ,
12621eb62cbbSBarry Smith        0,
1263299609e3SLois Curfman McInnes        MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ,
1264299609e3SLois Curfman McInnes        MatGetReordering_MPIAIJ,
1265299609e3SLois Curfman McInnes        MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0,
1266d1710a03SLois Curfman McInnes        MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ,
1267299609e3SLois Curfman McInnes        MatILUFactorSymbolic_MPIAIJ,0,
1268ff7509f2SBarry Smith        0,0,MatConvert_MPIAIJ,0,0,MatCopyPrivate_MPIAIJ};
12698a729477SBarry Smith 
12701987afe7SBarry Smith /*@C
1271ff756334SLois Curfman McInnes    MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format
1272ff756334SLois Curfman McInnes    (the default parallel PETSc format).
12738a729477SBarry Smith 
12748a729477SBarry Smith    Input Parameters:
12751eb62cbbSBarry Smith .  comm - MPI communicator
12767d3e4905SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
12777d3e4905SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated
12787d3e4905SLois Curfman McInnes            if N is given)
12797d3e4905SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
12807d3e4905SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated
12817d3e4905SLois Curfman McInnes            if n is given)
1282ab693e5aSLois Curfman McInnes .  d_nz - number of nonzeros per row in diagonal portion of local submatrix
1283ff756334SLois Curfman McInnes            (same for all local rows)
1284ab693e5aSLois Curfman McInnes .  d_nzz - number of nonzeros per row in diagonal portion of local submatrix
1285ab693e5aSLois Curfman McInnes            or null (possibly different for each row).  You must leave room
1286ab693e5aSLois Curfman McInnes            for the diagonal entry even if it is zero.
1287ab693e5aSLois Curfman McInnes .  o_nz - number of nonzeros per row in off-diagonal portion of local
1288ab693e5aSLois Curfman McInnes            submatrix (same for all local rows).
1289ab693e5aSLois Curfman McInnes .  o_nzz - number of nonzeros per row in off-diagonal portion of local
1290ab693e5aSLois Curfman McInnes            submatrix or null (possibly different for each row).
12918a729477SBarry Smith 
1292ff756334SLois Curfman McInnes    Output Parameter:
12938a729477SBarry Smith .  newmat - the matrix
12948a729477SBarry Smith 
1295ff756334SLois Curfman McInnes    Notes:
1296ff756334SLois Curfman McInnes    The AIJ format (also called the Yale sparse matrix format or
1297ff756334SLois Curfman McInnes    compressed row storage), is fully compatible with standard Fortran 77
12980002213bSLois Curfman McInnes    storage.  That is, the stored row and column indices can begin at
12990002213bSLois Curfman McInnes    either one (as in Fortran) or zero.  See the users manual for details.
1300ff756334SLois Curfman McInnes 
1301ff756334SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
1302ff756334SLois Curfman McInnes    (possibly both).
1303ff756334SLois Curfman McInnes 
1304e0245417SLois Curfman McInnes    Storage Information:
1305e0245417SLois Curfman McInnes    For a square global matrix we define each processor's diagonal portion
1306e0245417SLois Curfman McInnes    to be its local rows and the corresponding columns (a square submatrix);
1307e0245417SLois Curfman McInnes    each processor's off-diagonal portion encompasses the remainder of the
1308e0245417SLois Curfman McInnes    local matrix (a rectangular submatrix).
1309e0245417SLois Curfman McInnes 
1310e0245417SLois Curfman McInnes    The user can specify preallocated storage for the diagonal part of
1311e0245417SLois Curfman McInnes    the local submatrix with either d_nz or d_nnz (not both). Set both
1312e0245417SLois Curfman McInnes    d_nz and d_nnz to zero for PETSc to control dynamic memory allocation.
1313e0245417SLois Curfman McInnes    Likewise, specify preallocated storage for the off-diagonal part of
1314e0245417SLois Curfman McInnes    the local submatrix with o_nz or o_nnz (not both).
1315ff756334SLois Curfman McInnes 
1316dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel
1317ff756334SLois Curfman McInnes 
1318fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
13198a729477SBarry Smith @*/
13201eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N,
13211eb62cbbSBarry Smith                     int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat)
13228a729477SBarry Smith {
13238a729477SBarry Smith   Mat          mat;
1324416022c9SBarry Smith   Mat_MPIAIJ   *a;
13256abc6512SBarry Smith   int          ierr, i,sum[2],work[2];
1326416022c9SBarry Smith 
13278a729477SBarry Smith   *newmat         = 0;
132844a69424SLois Curfman McInnes   PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm);
1329a5a9c739SBarry Smith   PLogObjectCreate(mat);
1330416022c9SBarry Smith   mat->data       = (void *) (a = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(a);
1331416022c9SBarry Smith   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
133244a69424SLois Curfman McInnes   mat->destroy    = MatDestroy_MPIAIJ;
133344a69424SLois Curfman McInnes   mat->view       = MatView_MPIAIJ;
13348a729477SBarry Smith   mat->factor     = 0;
1335d6dfbf8fSBarry Smith 
133664119d58SLois Curfman McInnes   a->insertmode = NOT_SET_VALUES;
133717699dbbSLois Curfman McInnes   MPI_Comm_rank(comm,&a->rank);
133817699dbbSLois Curfman McInnes   MPI_Comm_size(comm,&a->size);
13391eb62cbbSBarry Smith 
13401987afe7SBarry Smith   if (m == PETSC_DECIDE && (d_nnz || o_nnz))
13411987afe7SBarry Smith     SETERRQ(1,"MatCreateMPIAIJ:Cannot have PETSc decide rows but set d_nnz or o_nnz");
13421987afe7SBarry Smith 
1343dbd7a890SLois Curfman McInnes   if (M == PETSC_DECIDE || N == PETSC_DECIDE) {
13441eb62cbbSBarry Smith     work[0] = m; work[1] = n;
1345d65a2f8fSBarry Smith     MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );
1346dbd7a890SLois Curfman McInnes     if (M == PETSC_DECIDE) M = sum[0];
1347dbd7a890SLois Curfman McInnes     if (N == PETSC_DECIDE) N = sum[1];
13481eb62cbbSBarry Smith   }
134917699dbbSLois Curfman McInnes   if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);}
135017699dbbSLois Curfman McInnes   if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);}
1351416022c9SBarry Smith   a->m = m;
1352416022c9SBarry Smith   a->n = n;
1353416022c9SBarry Smith   a->N = N;
1354416022c9SBarry Smith   a->M = M;
13551eb62cbbSBarry Smith 
13561eb62cbbSBarry Smith   /* build local table of row and column ownerships */
135717699dbbSLois Curfman McInnes   a->rowners = (int *) PETSCMALLOC(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners);
135817699dbbSLois Curfman McInnes   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+
1359464493b3SBarry Smith                        sizeof(Mat_MPIAIJ));
136017699dbbSLois Curfman McInnes   a->cowners = a->rowners + a->size + 1;
1361416022c9SBarry Smith   MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm);
1362416022c9SBarry Smith   a->rowners[0] = 0;
136317699dbbSLois Curfman McInnes   for ( i=2; i<=a->size; i++ ) {
1364416022c9SBarry Smith     a->rowners[i] += a->rowners[i-1];
13658a729477SBarry Smith   }
136617699dbbSLois Curfman McInnes   a->rstart = a->rowners[a->rank];
136717699dbbSLois Curfman McInnes   a->rend   = a->rowners[a->rank+1];
1368416022c9SBarry Smith   MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm);
1369416022c9SBarry Smith   a->cowners[0] = 0;
137017699dbbSLois Curfman McInnes   for ( i=2; i<=a->size; i++ ) {
1371416022c9SBarry Smith     a->cowners[i] += a->cowners[i-1];
13728a729477SBarry Smith   }
137317699dbbSLois Curfman McInnes   a->cstart = a->cowners[a->rank];
137417699dbbSLois Curfman McInnes   a->cend   = a->cowners[a->rank+1];
13758a729477SBarry Smith 
1376416022c9SBarry Smith   ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&a->A); CHKERRQ(ierr);
1377416022c9SBarry Smith   PLogObjectParent(mat,a->A);
1378416022c9SBarry Smith   ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&a->B); CHKERRQ(ierr);
1379416022c9SBarry Smith   PLogObjectParent(mat,a->B);
13808a729477SBarry Smith 
13811eb62cbbSBarry Smith   /* build cache for off array entries formed */
1382416022c9SBarry Smith   ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr);
1383416022c9SBarry Smith   a->colmap    = 0;
1384416022c9SBarry Smith   a->garray    = 0;
13858a729477SBarry Smith 
13861eb62cbbSBarry Smith   /* stuff used for matrix vector multiply */
1387416022c9SBarry Smith   a->lvec      = 0;
1388416022c9SBarry Smith   a->Mvctx     = 0;
1389416022c9SBarry Smith   a->assembled = 0;
13908a729477SBarry Smith 
1391d6dfbf8fSBarry Smith   *newmat = mat;
1392d6dfbf8fSBarry Smith   return 0;
1393d6dfbf8fSBarry Smith }
1394c74985f6SBarry Smith 
1395a56f8943SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat matin,Mat *newmat,int cpvalues)
1396d6dfbf8fSBarry Smith {
1397d6dfbf8fSBarry Smith   Mat        mat;
1398416022c9SBarry Smith   Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data;
13992ee70a88SLois Curfman McInnes   int        ierr, len;
1400d6dfbf8fSBarry Smith 
1401416022c9SBarry Smith   if (!oldmat->assembled) SETERRQ(1,"MatCopyPrivate_MPIAIJ:Must assemble matrix");
1402416022c9SBarry Smith   *newmat       = 0;
140344a69424SLois Curfman McInnes   PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm);
1404a5a9c739SBarry Smith   PLogObjectCreate(mat);
1405416022c9SBarry Smith   mat->data     = (void *) (a = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(a);
1406416022c9SBarry Smith   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
140744a69424SLois Curfman McInnes   mat->destroy  = MatDestroy_MPIAIJ;
140844a69424SLois Curfman McInnes   mat->view     = MatView_MPIAIJ;
1409d6dfbf8fSBarry Smith   mat->factor   = matin->factor;
1410d6dfbf8fSBarry Smith 
1411416022c9SBarry Smith   a->m          = oldmat->m;
1412416022c9SBarry Smith   a->n          = oldmat->n;
1413416022c9SBarry Smith   a->M          = oldmat->M;
1414416022c9SBarry Smith   a->N          = oldmat->N;
1415d6dfbf8fSBarry Smith 
1416416022c9SBarry Smith   a->assembled  = 1;
1417416022c9SBarry Smith   a->rstart     = oldmat->rstart;
1418416022c9SBarry Smith   a->rend       = oldmat->rend;
1419416022c9SBarry Smith   a->cstart     = oldmat->cstart;
1420416022c9SBarry Smith   a->cend       = oldmat->cend;
142117699dbbSLois Curfman McInnes   a->size       = oldmat->size;
142217699dbbSLois Curfman McInnes   a->rank       = oldmat->rank;
142364119d58SLois Curfman McInnes   a->insertmode = NOT_SET_VALUES;
1424d6dfbf8fSBarry Smith 
142517699dbbSLois Curfman McInnes   a->rowners = (int *) PETSCMALLOC((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners);
142617699dbbSLois Curfman McInnes   PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ));
142717699dbbSLois Curfman McInnes   PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int));
1428416022c9SBarry Smith   ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr);
14292ee70a88SLois Curfman McInnes   if (oldmat->colmap) {
1430416022c9SBarry Smith     a->colmap = (int *) PETSCMALLOC((a->N)*sizeof(int));CHKPTRQ(a->colmap);
1431416022c9SBarry Smith     PLogObjectMemory(mat,(a->N)*sizeof(int));
1432416022c9SBarry Smith     PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int));
1433416022c9SBarry Smith   } else a->colmap = 0;
1434ec8511deSBarry Smith   if (oldmat->garray && (len = ((Mat_SeqAIJ *) (oldmat->B->data))->n)) {
1435416022c9SBarry Smith     a->garray = (int *) PETSCMALLOC(len*sizeof(int)); CHKPTRQ(a->garray);
1436464493b3SBarry Smith     PLogObjectMemory(mat,len*sizeof(int));
1437416022c9SBarry Smith     PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));
1438416022c9SBarry Smith   } else a->garray = 0;
1439d6dfbf8fSBarry Smith 
1440416022c9SBarry Smith   ierr =  VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr);
1441416022c9SBarry Smith   PLogObjectParent(mat,a->lvec);
1442a56f8943SBarry Smith   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr);
1443416022c9SBarry Smith   PLogObjectParent(mat,a->Mvctx);
1444416022c9SBarry Smith   ierr =  MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr);
1445416022c9SBarry Smith   PLogObjectParent(mat,a->A);
1446416022c9SBarry Smith   ierr =  MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr);
1447416022c9SBarry Smith   PLogObjectParent(mat,a->B);
14488a729477SBarry Smith   *newmat = mat;
14498a729477SBarry Smith   return 0;
14508a729477SBarry Smith }
1451416022c9SBarry Smith 
1452416022c9SBarry Smith #include "sysio.h"
1453416022c9SBarry Smith 
145402834360SBarry Smith int MatLoad_MPIAIJorMPIRow(Viewer bview,MatType type,Mat *newmat)
1455416022c9SBarry Smith {
1456d65a2f8fSBarry Smith   Mat          A;
1457416022c9SBarry Smith   int          i, nz, ierr, j,rstart, rend, fd;
1458d65a2f8fSBarry Smith   Scalar       *vals,*svals;
1459416022c9SBarry Smith   PetscObject  vobj = (PetscObject) bview;
1460416022c9SBarry Smith   MPI_Comm     comm = vobj->comm;
1461416022c9SBarry Smith   MPI_Status   status;
146217699dbbSLois Curfman McInnes   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols;
1463d65a2f8fSBarry Smith   int          *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols;
1464d65a2f8fSBarry Smith   int          tag = ((PetscObject)bview)->tag;
1465416022c9SBarry Smith 
146617699dbbSLois Curfman McInnes   MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank);
146717699dbbSLois Curfman McInnes   if (!rank) {
1468416022c9SBarry Smith     ierr = ViewerFileGetDescriptor_Private(bview,&fd); CHKERRQ(ierr);
1469416022c9SBarry Smith     ierr = SYRead(fd,(char *)header,4,SYINT); CHKERRQ(ierr);
147002834360SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:not matrix object");
1471416022c9SBarry Smith   }
1472416022c9SBarry Smith 
1473416022c9SBarry Smith   MPI_Bcast(header+1,3,MPI_INT,0,comm);
1474416022c9SBarry Smith   M = header[1]; N = header[2];
1475416022c9SBarry Smith   /* determine ownership of all rows */
147617699dbbSLois Curfman McInnes   m = M/size + ((M % size) > rank);
147717699dbbSLois Curfman McInnes   rowners = (int *) PETSCMALLOC((size+2)*sizeof(int)); CHKPTRQ(rowners);
1478416022c9SBarry Smith   MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);
1479416022c9SBarry Smith   rowners[0] = 0;
148017699dbbSLois Curfman McInnes   for ( i=2; i<=size; i++ ) {
1481416022c9SBarry Smith     rowners[i] += rowners[i-1];
1482416022c9SBarry Smith   }
148317699dbbSLois Curfman McInnes   rstart = rowners[rank];
148417699dbbSLois Curfman McInnes   rend   = rowners[rank+1];
1485416022c9SBarry Smith 
1486416022c9SBarry Smith   /* distribute row lengths to all processors */
1487416022c9SBarry Smith   ourlens = (int*) PETSCMALLOC( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens);
1488416022c9SBarry Smith   offlens = ourlens + (rend-rstart);
148917699dbbSLois Curfman McInnes   if (!rank) {
1490416022c9SBarry Smith     rowlengths = (int*) PETSCMALLOC( M*sizeof(int) ); CHKPTRQ(rowlengths);
1491416022c9SBarry Smith     ierr = SYRead(fd,rowlengths,M,SYINT); CHKERRQ(ierr);
149217699dbbSLois Curfman McInnes     sndcounts = (int*) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(sndcounts);
149317699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i];
1494d65a2f8fSBarry Smith     MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);
14956ef5f50fSLois Curfman McInnes     PETSCFREE(sndcounts);
1496416022c9SBarry Smith   }
1497416022c9SBarry Smith   else {
1498416022c9SBarry Smith     MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);
1499416022c9SBarry Smith   }
1500416022c9SBarry Smith 
150117699dbbSLois Curfman McInnes   if (!rank) {
1502416022c9SBarry Smith     /* calculate the number of nonzeros on each processor */
150317699dbbSLois Curfman McInnes     procsnz = (int*) PETSCMALLOC( size*sizeof(int) ); CHKPTRQ(procsnz);
150417699dbbSLois Curfman McInnes     PetscZero(procsnz,size*sizeof(int));
150517699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) {
1506416022c9SBarry Smith       for ( j=rowners[i]; j< rowners[i+1]; j++ ) {
1507416022c9SBarry Smith         procsnz[i] += rowlengths[j];
1508416022c9SBarry Smith       }
1509416022c9SBarry Smith     }
15106ef5f50fSLois Curfman McInnes     PETSCFREE(rowlengths);
1511416022c9SBarry Smith 
1512416022c9SBarry Smith     /* determine max buffer needed and allocate it */
1513416022c9SBarry Smith     maxnz = 0;
151417699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) {
1515416022c9SBarry Smith       maxnz = PETSCMAX(maxnz,procsnz[i]);
1516416022c9SBarry Smith     }
1517416022c9SBarry Smith     cols = (int *) PETSCMALLOC( maxnz*sizeof(int) ); CHKPTRQ(cols);
1518416022c9SBarry Smith 
1519416022c9SBarry Smith     /* read in my part of the matrix column indices  */
1520416022c9SBarry Smith     nz = procsnz[0];
1521d65a2f8fSBarry Smith     mycols = (int *) PETSCMALLOC( nz*sizeof(int) ); CHKPTRQ(mycols);
1522d65a2f8fSBarry Smith     ierr = SYRead(fd,mycols,nz,SYINT); CHKERRQ(ierr);
1523d65a2f8fSBarry Smith 
1524d65a2f8fSBarry Smith     /* read in every one elses and ship off */
152517699dbbSLois Curfman McInnes     for ( i=1; i<size; i++ ) {
1526d65a2f8fSBarry Smith       nz = procsnz[i];
1527416022c9SBarry Smith       ierr = SYRead(fd,cols,nz,SYINT); CHKERRQ(ierr);
1528d65a2f8fSBarry Smith       MPI_Send(cols,nz,MPI_INT,i,tag,comm);
1529d65a2f8fSBarry Smith     }
1530d65a2f8fSBarry Smith     PETSCFREE(cols);
1531416022c9SBarry Smith   }
1532416022c9SBarry Smith   else {
1533416022c9SBarry Smith     /* determine buffer space needed for message */
1534416022c9SBarry Smith     nz = 0;
1535416022c9SBarry Smith     for ( i=0; i<m; i++ ) {
1536416022c9SBarry Smith       nz += ourlens[i];
1537416022c9SBarry Smith     }
1538d65a2f8fSBarry Smith     mycols = (int*) PETSCMALLOC( nz*sizeof(int) ); CHKPTRQ(mycols);
1539416022c9SBarry Smith 
1540416022c9SBarry Smith     /* receive message of column indices*/
1541d65a2f8fSBarry Smith     MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);
1542416022c9SBarry Smith     MPI_Get_count(&status,MPI_INT,&maxnz);
154302834360SBarry Smith     if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file");
1544416022c9SBarry Smith   }
1545416022c9SBarry Smith 
1546416022c9SBarry Smith   /* loop over local rows, determining number of off diagonal entries */
1547416022c9SBarry Smith   PetscZero(offlens,m*sizeof(int));
1548416022c9SBarry Smith   jj = 0;
1549416022c9SBarry Smith   for ( i=0; i<m; i++ ) {
1550416022c9SBarry Smith     for ( j=0; j<ourlens[i]; j++ ) {
1551d65a2f8fSBarry Smith       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
1552416022c9SBarry Smith       jj++;
1553416022c9SBarry Smith     }
1554416022c9SBarry Smith   }
1555d65a2f8fSBarry Smith 
1556d65a2f8fSBarry Smith   /* create our matrix */
1557416022c9SBarry Smith   for ( i=0; i<m; i++ ) {
1558416022c9SBarry Smith     ourlens[i] -= offlens[i];
1559416022c9SBarry Smith   }
1560d65a2f8fSBarry Smith   if (type == MATMPIAIJ) {
1561d65a2f8fSBarry Smith     ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr);
1562d65a2f8fSBarry Smith   }
1563d65a2f8fSBarry Smith   else if (type == MATMPIROW) {
1564d65a2f8fSBarry Smith     ierr = MatCreateMPIRow(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr);
1565d65a2f8fSBarry Smith   }
1566d65a2f8fSBarry Smith   A = *newmat;
1567d65a2f8fSBarry Smith   MatSetOption(A,COLUMNS_SORTED);
1568d65a2f8fSBarry Smith   for ( i=0; i<m; i++ ) {
1569d65a2f8fSBarry Smith     ourlens[i] += offlens[i];
1570d65a2f8fSBarry Smith   }
1571416022c9SBarry Smith 
157217699dbbSLois Curfman McInnes   if (!rank) {
1573416022c9SBarry Smith     vals = (Scalar *) PETSCMALLOC( maxnz*sizeof(Scalar) ); CHKPTRQ(vals);
1574416022c9SBarry Smith 
1575416022c9SBarry Smith     /* read in my part of the matrix numerical values  */
1576416022c9SBarry Smith     nz = procsnz[0];
1577416022c9SBarry Smith     ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr);
1578d65a2f8fSBarry Smith 
1579d65a2f8fSBarry Smith     /* insert into matrix */
1580d65a2f8fSBarry Smith     jj      = rstart;
1581d65a2f8fSBarry Smith     smycols = mycols;
1582d65a2f8fSBarry Smith     svals   = vals;
1583d65a2f8fSBarry Smith     for ( i=0; i<m; i++ ) {
1584d65a2f8fSBarry Smith       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1585d65a2f8fSBarry Smith       smycols += ourlens[i];
1586d65a2f8fSBarry Smith       svals   += ourlens[i];
1587d65a2f8fSBarry Smith       jj++;
1588416022c9SBarry Smith     }
1589416022c9SBarry Smith 
1590d65a2f8fSBarry Smith     /* read in other processors and ship out */
159117699dbbSLois Curfman McInnes     for ( i=1; i<size; i++ ) {
1592416022c9SBarry Smith       nz = procsnz[i];
1593416022c9SBarry Smith       ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr);
1594d65a2f8fSBarry Smith       MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);
1595416022c9SBarry Smith     }
15966ef5f50fSLois Curfman McInnes     PETSCFREE(procsnz);
1597416022c9SBarry Smith   }
1598d65a2f8fSBarry Smith   else {
1599d65a2f8fSBarry Smith     /* receive numeric values */
1600d65a2f8fSBarry Smith     vals = (Scalar*) PETSCMALLOC( nz*sizeof(Scalar) ); CHKPTRQ(vals);
1601416022c9SBarry Smith 
1602d65a2f8fSBarry Smith     /* receive message of values*/
1603d65a2f8fSBarry Smith     MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);
1604d65a2f8fSBarry Smith     MPI_Get_count(&status,MPIU_SCALAR,&maxnz);
160502834360SBarry Smith     if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJorMPIRow:something is wrong with file");
1606d65a2f8fSBarry Smith 
1607d65a2f8fSBarry Smith     /* insert into matrix */
1608d65a2f8fSBarry Smith     jj      = rstart;
1609d65a2f8fSBarry Smith     smycols = mycols;
1610d65a2f8fSBarry Smith     svals   = vals;
1611d65a2f8fSBarry Smith     for ( i=0; i<m; i++ ) {
1612d65a2f8fSBarry Smith       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1613d65a2f8fSBarry Smith       smycols += ourlens[i];
1614d65a2f8fSBarry Smith       svals   += ourlens[i];
1615d65a2f8fSBarry Smith       jj++;
1616d65a2f8fSBarry Smith     }
1617d65a2f8fSBarry Smith   }
16186ef5f50fSLois Curfman McInnes   PETSCFREE(ourlens); PETSCFREE(vals); PETSCFREE(mycols); PETSCFREE(rowners);
1619d65a2f8fSBarry Smith 
1620d65a2f8fSBarry Smith   ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
1621d65a2f8fSBarry Smith   ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
1622416022c9SBarry Smith   return 0;
1623416022c9SBarry Smith }
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