xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 0b4b7b1c20c2ed4ade67e3d50a7710fe0ffbfca5)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
1026cec326SBarry Smith {
1126cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1226cec326SBarry Smith 
1326cec326SBarry Smith   PetscFunctionBegin;
1426cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1526cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1626cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
1726cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
1826cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2026cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2126cec326SBarry Smith #else
2226cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
2326cec326SBarry Smith #endif
2426cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
2526cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
2626cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
2726cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
2826cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
2926cec326SBarry Smith 
3026cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3126cec326SBarry Smith 
3226cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
3326cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
3426cec326SBarry Smith 
3526cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
4126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
4326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
4726cec326SBarry Smith #endif
4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
4926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
5026cec326SBarry Smith #endif
5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
5226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
5326cec326SBarry Smith #endif
5426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
5726cec326SBarry Smith #endif
5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
6026cec326SBarry Smith #endif
6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
6226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
6326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
6426cec326SBarry Smith #endif
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
6926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
7326cec326SBarry Smith #endif
7426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
7626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
7726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
7926cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
8026cec326SBarry Smith }
8126cec326SBarry Smith 
8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
8326cec326SBarry Smith #define TYPE AIJ
8426cec326SBarry Smith #define TYPE_AIJ
8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
8626cec326SBarry Smith #undef TYPE
8726cec326SBarry Smith #undef TYPE_AIJ
8826cec326SBarry Smith 
89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
90d71ae5a4SJacob Faibussowitsch {
918a9c020eSBarry Smith   Mat B;
928a9c020eSBarry Smith 
938a9c020eSBarry Smith   PetscFunctionBegin;
948a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
958a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
968a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
97501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
998a9c020eSBarry Smith }
1008a9c020eSBarry Smith 
101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
102d71ae5a4SJacob Faibussowitsch {
1038a9c020eSBarry Smith   Mat B;
1048a9c020eSBarry Smith 
1058a9c020eSBarry Smith   PetscFunctionBegin;
1068a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1078a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
108501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1108a9c020eSBarry Smith }
1118a9c020eSBarry Smith 
11201bebe75SBarry Smith /*MC
11301bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
11401bebe75SBarry Smith 
11511a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
11611a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
11711a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
11801bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
11901bebe75SBarry Smith   the above preallocation routines for simplicity.
12001bebe75SBarry Smith 
12127430b45SBarry Smith    Options Database Key:
12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
12301bebe75SBarry Smith 
12411a5261eSBarry Smith   Developer Note:
1252ef1f0ffSBarry Smith   Level: beginner
1262ef1f0ffSBarry Smith 
12711a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
12801bebe75SBarry Smith    enough exist.
12901bebe75SBarry Smith 
1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
13101bebe75SBarry Smith M*/
13201bebe75SBarry Smith 
13301bebe75SBarry Smith /*MC
13401bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
13501bebe75SBarry Smith 
13611a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
13711a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
13811a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
13901bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14001bebe75SBarry Smith   the above preallocation routines for simplicity.
14101bebe75SBarry Smith 
14227430b45SBarry Smith    Options Database Key:
14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
14401bebe75SBarry Smith 
14501bebe75SBarry Smith   Level: beginner
14601bebe75SBarry Smith 
1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
14801bebe75SBarry Smith M*/
14901bebe75SBarry Smith 
150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
151d71ae5a4SJacob Faibussowitsch {
152f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
153f74ef234SStefano Zampini 
154f74ef234SStefano Zampini   PetscFunctionBegin;
155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
156b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
157f74ef234SStefano Zampini #endif
1581baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1591baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1603120d049SRichard Tran Mills 
1613120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1623120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1633120d049SRichard Tran Mills    * to differ from the parent matrix. */
1641baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1651baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
167f74ef234SStefano Zampini }
168f74ef234SStefano Zampini 
169ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
170d71ae5a4SJacob Faibussowitsch {
17126bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
17226bda2c4Sstefano_zampini 
17326bda2c4Sstefano_zampini   PetscFunctionBegin;
17446533700Sstefano_zampini   if (mat->A) {
1759566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1769566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
17746533700Sstefano_zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17926bda2c4Sstefano_zampini }
18026bda2c4Sstefano_zampini 
181ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
182d71ae5a4SJacob Faibussowitsch {
18327d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
18427d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
18527d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
18627d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
187ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
18827d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
18927d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
19027d4218bSShri Abhyankar 
19127d4218bSShri Abhyankar   PetscFunctionBegin;
192f4259b30SLisandro Dalcin   *keptrows = NULL;
193ce496241SStefano Zampini 
19427d4218bSShri Abhyankar   ia = a->i;
19527d4218bSShri Abhyankar   ib = b->i;
1969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
1979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
19827d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
19927d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
20027d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
20127d4218bSShri Abhyankar     if (!na && !nb) {
20227d4218bSShri Abhyankar       cnt++;
20327d4218bSShri Abhyankar       goto ok1;
20427d4218bSShri Abhyankar     }
205ce496241SStefano Zampini     aa = aav + ia[i];
20627d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
20727d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
20827d4218bSShri Abhyankar     }
2098e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
21027d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
21127d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
21227d4218bSShri Abhyankar     }
21327d4218bSShri Abhyankar     cnt++;
21427d4218bSShri Abhyankar   ok1:;
21527d4218bSShri Abhyankar   }
216462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
217ce496241SStefano Zampini   if (!n0rows) {
2189566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2203ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
221ce496241SStefano Zampini   }
2229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
22327d4218bSShri Abhyankar   cnt = 0;
22427d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22527d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22627d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22727d4218bSShri Abhyankar     if (!na && !nb) continue;
228ce496241SStefano Zampini     aa = aav + ia[i];
22927d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
23027d4218bSShri Abhyankar       if (aa[j] != 0.0) {
23127d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23227d4218bSShri Abhyankar         goto ok2;
23327d4218bSShri Abhyankar       }
23427d4218bSShri Abhyankar     }
2358e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23627d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23727d4218bSShri Abhyankar       if (bb[j] != 0.0) {
23827d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23927d4218bSShri Abhyankar         goto ok2;
24027d4218bSShri Abhyankar       }
24127d4218bSShri Abhyankar     }
24227d4218bSShri Abhyankar   ok2:;
24327d4218bSShri Abhyankar   }
2449566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2469566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24827d4218bSShri Abhyankar }
24927d4218bSShri Abhyankar 
250ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
251d71ae5a4SJacob Faibussowitsch {
25299e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
25394342113SStefano Zampini   PetscBool   cong;
25499e65526SBarry Smith 
25599e65526SBarry Smith   PetscFunctionBegin;
2569566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
25794342113SStefano Zampini   if (Y->assembled && cong) {
2589566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
25999e65526SBarry Smith   } else {
2609566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
26199e65526SBarry Smith   }
2623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26399e65526SBarry Smith }
26499e65526SBarry Smith 
265ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
266d71ae5a4SJacob Faibussowitsch {
267f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
268f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
269f1f41ecbSJed Brown 
270f1f41ecbSJed Brown   PetscFunctionBegin;
2710298fd71SBarry Smith   *zrows = NULL;
2729566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2739566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
274f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2759566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
277f1f41ecbSJed Brown }
278f1f41ecbSJed Brown 
279ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
280d71ae5a4SJacob Faibussowitsch {
2810716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
282a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
2830716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
2840716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
2850716a85fSBarry Smith   PetscReal         *work;
286ce496241SStefano Zampini   const PetscScalar *dummy;
2876497c311SBarry Smith   PetscMPIInt        in;
2880716a85fSBarry Smith 
2890716a85fSBarry Smith   PetscFunctionBegin;
2909566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
2919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
2929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
2939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
2949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
2959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
296857cbf51SRichard Tran Mills   if (type == NORM_2) {
297ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
298ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
299857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
300ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
301ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
302857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
303ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
304ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
305857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
306ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
307ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
308857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
309ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
310ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
311857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
3126497c311SBarry Smith   PetscCall(PetscMPIIntCast(n, &in));
313857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
314462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(work, reductions, in, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3150716a85fSBarry Smith   } else {
316462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(work, reductions, in, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3170716a85fSBarry Smith   }
3189566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
319857cbf51SRichard Tran Mills   if (type == NORM_2) {
320a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
321857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
322a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3230716a85fSBarry Smith   }
3243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3250716a85fSBarry Smith }
3260716a85fSBarry Smith 
327ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
328d71ae5a4SJacob Faibussowitsch {
329e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
330e52d2c62SBarry Smith   IS              sis, gis;
331e52d2c62SBarry Smith   const PetscInt *isis, *igis;
332e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
333e52d2c62SBarry Smith 
334e52d2c62SBarry Smith   PetscFunctionBegin;
3359566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3369566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3379566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3389566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3399566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3409566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
341e52d2c62SBarry Smith 
3429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3439566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3449566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
345e52d2c62SBarry Smith   n = ngis + nsis;
3469566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3479566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
348e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3499566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
350e52d2c62SBarry Smith 
3519566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3529566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3539566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3549566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
356e52d2c62SBarry Smith }
357e52d2c62SBarry Smith 
358dd6ea824SBarry Smith /*
3590f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3609e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3610f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3620f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
36372fa4726SStefano Zampini has an order N integer array but is fast to access.
3649e25ed09SBarry Smith */
365d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
366d71ae5a4SJacob Faibussowitsch {
36744a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
368d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
369dbb450caSBarry Smith 
3703a40ed3dSBarry Smith   PetscFunctionBegin;
37108401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
372aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
373eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
374c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
375b1fc9764SSatish Balay #else
3769566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
377905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
378b1fc9764SSatish Balay #endif
3793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3809e25ed09SBarry Smith }
3819e25ed09SBarry Smith 
382d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
383a8f51744SPierre Jolivet   do { \
384db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
385db4deed7SKarl Rupp     else high1 = nrow1; \
386fd3458f5SBarry Smith     lastcol1 = col; \
387fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
388fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
389fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
390fd3458f5SBarry Smith       else low1 = t; \
391ba4e3ef2SSatish Balay     } \
392fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
393fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
394fd3458f5SBarry Smith       if (rp1[_i] == col) { \
3950c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
3960c0d7e18SFande Kong           ap1[_i] += value; \
3970c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
3980c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
3999371c9d4SSatish Balay         } else ap1[_i] = value; \
40030770e4dSSatish Balay         goto a_noinsert; \
4010520107fSSatish Balay       } \
4020520107fSSatish Balay     } \
4039371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4049371c9d4SSatish Balay       low1  = 0; \
4059371c9d4SSatish Balay       high1 = nrow1; \
4069371c9d4SSatish Balay       goto a_noinsert; \
4079371c9d4SSatish Balay     } \
4089371c9d4SSatish Balay     if (nonew == 1) { \
4099371c9d4SSatish Balay       low1  = 0; \
4109371c9d4SSatish Balay       high1 = nrow1; \
4119371c9d4SSatish Balay       goto a_noinsert; \
4129371c9d4SSatish Balay     } \
41308401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
414fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4159371c9d4SSatish Balay     N = nrow1++ - 1; \
4169371c9d4SSatish Balay     a->nz++; \
4179371c9d4SSatish Balay     high1++; \
4180520107fSSatish Balay     /* shift up all the later entries in this row */ \
4199566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4209566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
421fd3458f5SBarry Smith     rp1[_i] = col; \
422fd3458f5SBarry Smith     ap1[_i] = value; \
42330770e4dSSatish Balay   a_noinsert:; \
424fd3458f5SBarry Smith     ailen[row] = nrow1; \
425a8f51744SPierre Jolivet   } while (0)
4260a198c4cSBarry Smith 
427d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
428a8f51744SPierre Jolivet   do { \
429db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
430db4deed7SKarl Rupp     else high2 = nrow2; \
431fd3458f5SBarry Smith     lastcol2 = col; \
432fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
433fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
434fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
435fd3458f5SBarry Smith       else low2 = t; \
436ba4e3ef2SSatish Balay     } \
437fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
438fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
439fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4400c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4410c0d7e18SFande Kong           ap2[_i] += value; \
4420c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4439371c9d4SSatish Balay         } else ap2[_i] = value; \
44430770e4dSSatish Balay         goto b_noinsert; \
44530770e4dSSatish Balay       } \
44630770e4dSSatish Balay     } \
4479371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4489371c9d4SSatish Balay       low2  = 0; \
4499371c9d4SSatish Balay       high2 = nrow2; \
4509371c9d4SSatish Balay       goto b_noinsert; \
4519371c9d4SSatish Balay     } \
4529371c9d4SSatish Balay     if (nonew == 1) { \
4539371c9d4SSatish Balay       low2  = 0; \
4549371c9d4SSatish Balay       high2 = nrow2; \
4559371c9d4SSatish Balay       goto b_noinsert; \
4569371c9d4SSatish Balay     } \
45708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
458fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4599371c9d4SSatish Balay     N = nrow2++ - 1; \
4609371c9d4SSatish Balay     b->nz++; \
4619371c9d4SSatish Balay     high2++; \
46230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4639566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4649566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
465fd3458f5SBarry Smith     rp2[_i] = col; \
466fd3458f5SBarry Smith     ap2[_i] = value; \
46730770e4dSSatish Balay   b_noinsert:; \
468fd3458f5SBarry Smith     bilen[row] = nrow2; \
469a8f51744SPierre Jolivet   } while (0)
47030770e4dSSatish Balay 
471ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
472d71ae5a4SJacob Faibussowitsch {
4732fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4742fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4752fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
476fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4772fd7e33dSBarry Smith 
4782fd7e33dSBarry Smith   PetscFunctionBegin;
4792fd7e33dSBarry Smith   /* code only works for square matrices A */
4802fd7e33dSBarry Smith 
4812fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
4829566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
4832fd7e33dSBarry Smith   row = row - diag;
4842fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
4852fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
4862fd7e33dSBarry Smith   }
487fff043a9SJunchao Zhang   if (l) {
4889566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
4899566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
4909566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
491fff043a9SJunchao Zhang   }
4922fd7e33dSBarry Smith 
4932fd7e33dSBarry Smith   /* diagonal part */
494fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
4959566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
49657508eceSPierre Jolivet     PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row]));
4979566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
498fff043a9SJunchao Zhang   }
4992fd7e33dSBarry Smith 
5002fd7e33dSBarry Smith   /* right of diagonal part */
501fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5029566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5039566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5049566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
505fff043a9SJunchao Zhang   }
5063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5072fd7e33dSBarry Smith }
5082fd7e33dSBarry Smith 
509d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
510d71ae5a4SJacob Faibussowitsch {
51144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
512071fcb05SBarry Smith   PetscScalar value = 0.0;
513d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
514d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
515ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5168a729477SBarry Smith 
5170520107fSSatish Balay   /* Some Variables required in the macro */
5184ee7247eSSatish Balay   Mat         A     = aij->A;
5194ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
52057809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
521ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
52230770e4dSSatish Balay   Mat         B                 = aij->B;
52330770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
524d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
525ce496241SStefano Zampini   MatScalar  *aa, *ba;
526fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5278d76821aSHong Zhang   PetscInt    nonew;
528a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5294ee7247eSSatish Balay 
5303a40ed3dSBarry Smith   PetscFunctionBegin;
5319566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5338a729477SBarry Smith   for (i = 0; i < m; i++) {
5345ef9f2a5SBarry Smith     if (im[i] < 0) continue;
53508401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5364b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5374b0e389bSBarry Smith       row      = im[i] - rstart;
538fd3458f5SBarry Smith       lastcol1 = -1;
5398e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5408e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
541fd3458f5SBarry Smith       rmax1    = aimax[row];
542fd3458f5SBarry Smith       nrow1    = ailen[row];
543fd3458f5SBarry Smith       low1     = 0;
544fd3458f5SBarry Smith       high1    = nrow1;
545fd3458f5SBarry Smith       lastcol2 = -1;
5468e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5478e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
548fd3458f5SBarry Smith       rmax2    = bimax[row];
549d498b1e9SBarry Smith       nrow2    = bilen[row];
550fd3458f5SBarry Smith       low2     = 0;
551fd3458f5SBarry Smith       high2    = nrow2;
552fd3458f5SBarry Smith 
5531eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
554071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
555c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
556fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
557fd3458f5SBarry Smith           col   = in[j] - cstart;
5588d76821aSHong Zhang           nonew = a->nonew;
559d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
560f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
561f7d195e4SLawrence Mitchell           continue;
562f7d195e4SLawrence Mitchell         } else {
563f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
564227d817aSBarry Smith           if (mat->was_assembled) {
56548a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
566aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
567eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
568fa46199cSSatish Balay             col--;
569b1fc9764SSatish Balay #else
570905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
571b1fc9764SSatish Balay #endif
572f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
573eb14dd14SAlex Lindsay               PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));  /* Change aij->B from reduced/local format to expanded/global format */
5744b0e389bSBarry Smith               col = in[j];
5759bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
576f9508a3cSSatish Balay               B     = aij->B;
577f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5789371c9d4SSatish Balay               bimax = b->imax;
5799371c9d4SSatish Balay               bi    = b->i;
5809371c9d4SSatish Balay               bilen = b->ilen;
5819371c9d4SSatish Balay               bj    = b->j;
5829371c9d4SSatish Balay               ba    = b->a;
583cff58d65SJunchao Zhang               rp2   = PetscSafePointerPlusOffset(bj, bi[row]);
584cff58d65SJunchao Zhang               ap2   = PetscSafePointerPlusOffset(ba, bi[row]);
585d498b1e9SBarry Smith               rmax2 = bimax[row];
586d498b1e9SBarry Smith               nrow2 = bilen[row];
587d498b1e9SBarry Smith               low2  = 0;
588d498b1e9SBarry Smith               high2 = nrow2;
589d0f46423SBarry Smith               bm    = aij->B->rmap->n;
590f9508a3cSSatish Balay               ba    = b->a;
591d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
592f4f49eeaSPierre Jolivet               if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) {
5939566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
59498921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
5950587a0fcSBarry Smith             }
596c48de900SBarry Smith           } else col = in[j];
5978d76821aSHong Zhang           nonew = b->nonew;
598d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
5991eb62cbbSBarry Smith         }
6001eb62cbbSBarry Smith       }
6015ef9f2a5SBarry Smith     } else {
60228b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
60390f02eecSBarry Smith       if (!aij->donotstash) {
6045080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
605d36fbae8SSatish Balay         if (roworiented) {
6068e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
607d36fbae8SSatish Balay         } else {
6088e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6094b0e389bSBarry Smith         }
6101eb62cbbSBarry Smith       }
6118a729477SBarry Smith     }
61290f02eecSBarry Smith   }
6135519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6168a729477SBarry Smith }
6178a729477SBarry Smith 
6182b08fdbeSandi selinger /*
619904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6202b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
621904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6222b08fdbeSandi selinger */
623d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
624d71ae5a4SJacob Faibussowitsch {
625904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
626904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6274cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
628904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
629904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
630904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
631904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
632904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6336dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
634904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
635904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
636904d1e70Sandi selinger 
637904d1e70Sandi selinger   PetscFunctionBegin;
638904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
639904d1e70Sandi selinger   for (j = 0; j < am; j++) {
640904d1e70Sandi selinger     dnz = onz = 0;
641904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6426dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
643904d1e70Sandi selinger       /* If column is in the diagonal */
644904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
645904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
646904d1e70Sandi selinger         dnz++;
647904d1e70Sandi selinger       } else { /* off-diagonal entries */
648904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
649904d1e70Sandi selinger         onz++;
650904d1e70Sandi selinger       }
651904d1e70Sandi selinger     }
652904d1e70Sandi selinger     ailen[j] = dnz;
653904d1e70Sandi selinger     bilen[j] = onz;
654904d1e70Sandi selinger   }
6553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
656904d1e70Sandi selinger }
657904d1e70Sandi selinger 
658904d1e70Sandi selinger /*
659904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
660904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6611de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6621de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6631de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
664904d1e70Sandi selinger */
665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
666d71ae5a4SJacob Faibussowitsch {
6673a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6683a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6694cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
670f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6713a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6723a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6733a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6743a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6753a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6766dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6771de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
678904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
679904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
6803a063d27Sandi selinger 
6813a063d27Sandi selinger   PetscFunctionBegin;
6823a063d27Sandi selinger   /* Iterate over all rows of the matrix */
6833a063d27Sandi selinger   for (j = 0; j < am; j++) {
684904d1e70Sandi selinger     dnz_row = onz_row = 0;
685904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
686904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
687e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
688e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
689ae8e66a0Sandi selinger       /* If column is in the diagonal */
6903a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
691904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
692904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
693904d1e70Sandi selinger         dnz_row++;
694ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
695904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
696904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
697904d1e70Sandi selinger         onz_row++;
6983a063d27Sandi selinger       }
6993a063d27Sandi selinger     }
700904d1e70Sandi selinger     ailen[j] = dnz_row;
701904d1e70Sandi selinger     bilen[j] = onz_row;
7023a063d27Sandi selinger   }
7033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7043a063d27Sandi selinger }
7053a063d27Sandi selinger 
706ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
707d71ae5a4SJacob Faibussowitsch {
708b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
709d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
710d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
711b49de8d1SLois Curfman McInnes 
7123a40ed3dSBarry Smith   PetscFunctionBegin;
713b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
71454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
71554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
71685835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
717b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
718b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
71954c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
72054c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
721b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
722b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7239566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
724fa852ad4SSatish Balay       } else {
72548a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
726aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
727eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
728fa46199cSSatish Balay         col--;
729b1fc9764SSatish Balay #else
730905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
731b1fc9764SSatish Balay #endif
732e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
73348a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
734b49de8d1SLois Curfman McInnes       }
735b49de8d1SLois Curfman McInnes     }
736b49de8d1SLois Curfman McInnes   }
7373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
738b49de8d1SLois Curfman McInnes }
739bc5ccf88SSatish Balay 
740ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
741d71ae5a4SJacob Faibussowitsch {
742bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
743b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
744bc5ccf88SSatish Balay 
745bc5ccf88SSatish Balay   PetscFunctionBegin;
7463ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
747bc5ccf88SSatish Balay 
7489566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7499566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7509566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
752bc5ccf88SSatish Balay }
753bc5ccf88SSatish Balay 
754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
755d71ae5a4SJacob Faibussowitsch {
756bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
757b1d57f15SBarry Smith   PetscMPIInt  n;
758b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
759e44c0bd4SBarry Smith   PetscInt    *row, *col;
760ace3abfcSBarry Smith   PetscBool    other_disassembled;
76187828ca2SBarry Smith   PetscScalar *val;
762bc5ccf88SSatish Balay 
76391c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7646e111a19SKarl Rupp 
765bc5ccf88SSatish Balay   PetscFunctionBegin;
7664cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
767a2d1c673SSatish Balay     while (1) {
7689566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
769a2d1c673SSatish Balay       if (!flg) break;
770a2d1c673SSatish Balay 
771bc5ccf88SSatish Balay       for (i = 0; i < n;) {
772bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7732205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7742205254eSKarl Rupp           if (row[j] != rstart) break;
7752205254eSKarl Rupp         }
776bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
777bc5ccf88SSatish Balay         else ncols = n - i;
778bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7799566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
780bc5ccf88SSatish Balay         i = j;
781bc5ccf88SSatish Balay       }
782bc5ccf88SSatish Balay     }
7839566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
784bc5ccf88SSatish Balay   }
7858c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
786c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
7879ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
7889ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
7899566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
7909566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
7919ecce9b1SRichard Tran Mills   }
792e2cf4d64SStefano Zampini #endif
7939566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
7949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
795bc5ccf88SSatish Balay 
796bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
797071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
798bc5ccf88SSatish Balay   /*
799bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
800bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
801bc5ccf88SSatish Balay   */
802bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
803462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
80435cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
805eb14dd14SAlex Lindsay       PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
806ad59fb31SSatish Balay     }
807ad59fb31SSatish Balay   }
80848a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8099566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8108c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
811c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
812e2cf4d64SStefano Zampini #endif
8139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
815bc5ccf88SSatish Balay 
8169566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8172205254eSKarl Rupp 
818f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
819a30b2313SHong Zhang 
8209566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
821e56f5c9eSBarry Smith 
8224f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
823f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
824e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
825462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
826e56f5c9eSBarry Smith   }
8278c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
828c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
829e2cf4d64SStefano Zampini #endif
8303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
831bc5ccf88SSatish Balay }
832bc5ccf88SSatish Balay 
833ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
834d71ae5a4SJacob Faibussowitsch {
83544a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8363a40ed3dSBarry Smith 
8373a40ed3dSBarry Smith   PetscFunctionBegin;
8389566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8399566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8411eb62cbbSBarry Smith }
8421eb62cbbSBarry Smith 
843ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
844d71ae5a4SJacob Faibussowitsch {
8451b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8461b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8476e520ac8SStefano Zampini   PetscInt    r, len;
8489939a2d1SBarry Smith   PetscBool   cong;
8491eb62cbbSBarry Smith 
8503a40ed3dSBarry Smith   PetscFunctionBegin;
8516e520ac8SStefano Zampini   /* get locally owned rows */
8529566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8539566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
854dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
85597b48c8fSBarry Smith   if (x && b) {
8561b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8571b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8581b1dd7adSMatthew G. Knepley 
85928b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8609566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8619566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8621b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8639566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8649566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
86597b48c8fSBarry Smith   }
866a92ad425SStefano Zampini 
867a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8689566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8699566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
870a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
871a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
872a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
873a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
874a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
875a92ad425SStefano Zampini 
876a92ad425SStefano Zampini     nnwA = aijA->nonew;
877a92ad425SStefano Zampini     nnwB = aijB->nonew;
878a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
879a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
880a92ad425SStefano Zampini     if (!nnzA) {
8819566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
882a92ad425SStefano Zampini       aijA->nonew = 0;
883a92ad425SStefano Zampini     }
884a92ad425SStefano Zampini     if (!nnzB) {
8859566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
886a92ad425SStefano Zampini       aijB->nonew = 0;
887a92ad425SStefano Zampini     }
888a92ad425SStefano Zampini     /* Must zero here before the next loop */
8899566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
8909566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
8911b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
8921b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
893a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
8949566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
895e2d53e46SBarry Smith     }
896a92ad425SStefano Zampini     aijA->nonew = nnwA;
897a92ad425SStefano Zampini     aijB->nonew = nnwB;
8986eb55b6aSBarry Smith   } else {
8999566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9009566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9016eb55b6aSBarry Smith   }
9029566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9054f9cfa9eSBarry Smith 
9069939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
907f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9089939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
909462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9109939a2d1SBarry Smith   }
9113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9121eb62cbbSBarry Smith }
9131eb62cbbSBarry Smith 
914ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
915d71ae5a4SJacob Faibussowitsch {
9169c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9176497c311SBarry Smith   PetscInt           n = A->rmap->n;
918131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
91954bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
920131c27b5Sprj-   PetscMPIInt        p = 0;
92154bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
92254bd4135SMatthew G. Knepley   PetscSF            sf;
9239c7c4993SBarry Smith   const PetscScalar *xx;
924fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
925564f14d6SBarry Smith   Vec                xmask, lmask;
926564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
927564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
928564f14d6SBarry Smith   PetscScalar       *aa;
9299c7c4993SBarry Smith 
9309c7c4993SBarry Smith   PetscFunctionBegin;
93154bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
93354bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
93554bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
93654bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
937aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9385ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9399566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9405ba17502SJed Brown     }
94154bd4135SMatthew G. Knepley     rrows[r].rank  = p;
94254bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9439c7c4993SBarry Smith   }
9449566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9459566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
94654bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9479566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9489566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9499566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
95054bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9519371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9529371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
953564f14d6SBarry Smith   /* zero diagonal part of matrix */
9549566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9554cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9569566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9579566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9589566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
95954bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9609566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9619566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9629566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9639566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
964a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
965a92ad425SStefano Zampini     PetscBool cong;
966a92ad425SStefano Zampini 
9679566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
96828b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9699566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9709566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9719566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9729566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
973377aa5a1SBarry Smith   }
9749566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9754cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9769566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
977564f14d6SBarry Smith   ii = aij->i;
9788e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
979564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
980564f14d6SBarry Smith   if (aij->compressedrow.use) {
981564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
982564f14d6SBarry Smith     ii   = aij->compressedrow.i;
983564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
984564f14d6SBarry Smith     for (i = 0; i < m; i++) {
985564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
986564f14d6SBarry Smith       aj = aij->j + ii[i];
987fff043a9SJunchao Zhang       aa = aij_a + ii[i];
988564f14d6SBarry Smith 
989564f14d6SBarry Smith       for (j = 0; j < n; j++) {
99025266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
991377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
992564f14d6SBarry Smith           *aa = 0.0;
993564f14d6SBarry Smith         }
994564f14d6SBarry Smith         aa++;
995564f14d6SBarry Smith         aj++;
996564f14d6SBarry Smith       }
997564f14d6SBarry Smith       ridx++;
998564f14d6SBarry Smith     }
999564f14d6SBarry Smith   } else { /* do not use compressed row format */
1000564f14d6SBarry Smith     m = l->B->rmap->n;
1001564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1002564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1003564f14d6SBarry Smith       aj = aij->j + ii[i];
1004fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1005564f14d6SBarry Smith       for (j = 0; j < n; j++) {
100625266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1007377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1008564f14d6SBarry Smith           *aa = 0.0;
1009564f14d6SBarry Smith         }
1010564f14d6SBarry Smith         aa++;
1011564f14d6SBarry Smith         aj++;
1012564f14d6SBarry Smith       }
1013564f14d6SBarry Smith     }
1014564f14d6SBarry Smith   }
1015a92ad425SStefano Zampini   if (x && b) {
10169566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10179566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1018377aa5a1SBarry Smith   }
10199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10209566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10229566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10234f9cfa9eSBarry Smith 
10244f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1025f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10264f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1027462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10284f9cfa9eSBarry Smith   }
10293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10309c7c4993SBarry Smith }
10319c7c4993SBarry Smith 
1032ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1033d71ae5a4SJacob Faibussowitsch {
1034416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1035b1d57f15SBarry Smith   PetscInt    nt;
103619b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1037416022c9SBarry Smith 
10383a40ed3dSBarry Smith   PetscFunctionBegin;
10399566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
104008401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10419566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1042296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10439566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1044296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10461eb62cbbSBarry Smith }
10471eb62cbbSBarry Smith 
1048ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1049d71ae5a4SJacob Faibussowitsch {
1050bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1051bd0c2dcbSBarry Smith 
1052bd0c2dcbSBarry Smith   PetscFunctionBegin;
10539566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1055bd0c2dcbSBarry Smith }
1056bd0c2dcbSBarry Smith 
1057ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1058d71ae5a4SJacob Faibussowitsch {
1059416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
106001ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10613a40ed3dSBarry Smith 
10623a40ed3dSBarry Smith   PetscFunctionBegin;
10639566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10649566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10659566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10669566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1068da3a660dSBarry Smith }
1069da3a660dSBarry Smith 
1070ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1071d71ae5a4SJacob Faibussowitsch {
1072416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1073da3a660dSBarry Smith 
10743a40ed3dSBarry Smith   PetscFunctionBegin;
1075da3a660dSBarry Smith   /* do nondiagonal part */
10769566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1077da3a660dSBarry Smith   /* do local part */
10789566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10799613dc34SJunchao Zhang   /* add partial results together */
10809566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10819566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1083da3a660dSBarry Smith }
1084da3a660dSBarry Smith 
1085ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1086d71ae5a4SJacob Faibussowitsch {
10874f423910Svictorle   MPI_Comm    comm;
1088ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1089ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1090cd0d46ebSvictorle   IS          Me, Notme;
1091b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
109254d735aeSStefano Zampini   PetscBool   lf;
1093b1d57f15SBarry Smith   PetscMPIInt size;
1094cd0d46ebSvictorle 
1095cd0d46ebSvictorle   PetscFunctionBegin;
109642e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
10979566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
1098462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
10993ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11009566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11023ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
110342e5f5b4Svictorle 
11047dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11059566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11069566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1108cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1109cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11109566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11119566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11129566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
111366501d38Svictorle   Aoff = Aoffs[0];
11149566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
111566501d38Svictorle   Boff = Boffs[0];
11169566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11179566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11189566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11199566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11209566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11219566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1123cd0d46ebSvictorle }
1124cd0d46ebSvictorle 
1125ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1126d71ae5a4SJacob Faibussowitsch {
1127416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1128da3a660dSBarry Smith 
11293a40ed3dSBarry Smith   PetscFunctionBegin;
1130da3a660dSBarry Smith   /* do nondiagonal part */
11319566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1132da3a660dSBarry Smith   /* do local part */
11339566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11349613dc34SJunchao Zhang   /* add partial results together */
11359566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11369566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1138da3a660dSBarry Smith }
1139da3a660dSBarry Smith 
11401eb62cbbSBarry Smith /*
11411eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11421eb62cbbSBarry Smith    diagonal block
11431eb62cbbSBarry Smith */
1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1145d71ae5a4SJacob Faibussowitsch {
1146416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11473a40ed3dSBarry Smith 
11483a40ed3dSBarry Smith   PetscFunctionBegin;
114908401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1150aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11519566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11531eb62cbbSBarry Smith }
11541eb62cbbSBarry Smith 
1155ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1156d71ae5a4SJacob Faibussowitsch {
1157052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11583a40ed3dSBarry Smith 
11593a40ed3dSBarry Smith   PetscFunctionBegin;
11609566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11619566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1163052efed2SBarry Smith }
1164052efed2SBarry Smith 
1165ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1166d71ae5a4SJacob Faibussowitsch {
11678e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11688e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11698e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11703ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11712e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
117217a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
117317a3732bSBarry Smith   PetscInt64         nz, hnz;
11743ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11753ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11763ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
117717a3732bSBarry Smith   PetscMPIInt        rank;
11788e2fed03SBarry Smith 
11798e2fed03SBarry Smith   PetscFunctionBegin;
11809566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
11813ea6fe3dSLisandro Dalcin 
11823ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
11833ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
11843ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
11853ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
11863ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
11878e2fed03SBarry Smith   nz = A->nz + B->nz;
11883ea6fe3dSLisandro Dalcin 
11893ea6fe3dSLisandro Dalcin   /* write matrix header */
11900700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
11919371c9d4SSatish Balay   header[1] = M;
11929371c9d4SSatish Balay   header[2] = N;
119317a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
119417a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
119538b83642SBarry Smith   if (rank == 0) {
11961690c2aeSBarry Smith     if (hnz > PETSC_INT_MAX) header[3] = PETSC_INT_MAX;
119738b83642SBarry Smith     else header[3] = (PetscInt)hnz;
119838b83642SBarry Smith   }
11999566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12008e2fed03SBarry Smith 
12013ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12033ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12049566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12059566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12068e2fed03SBarry Smith 
12073ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12093ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12103ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12113ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12123ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12138e2fed03SBarry Smith     }
12149371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12159371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12168e2fed03SBarry Smith   }
121717a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12189566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12199566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12208e2fed03SBarry Smith 
12213ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12253ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12263ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12273ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12282e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12298e2fed03SBarry Smith     }
12309371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12319371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12328e2fed03SBarry Smith   }
12339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
123517a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12369566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12379566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12388e2fed03SBarry Smith 
12393ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12409566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12428e2fed03SBarry Smith }
12438e2fed03SBarry Smith 
12449804daf3SBarry Smith #include <petscdraw.h>
1245ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1246d71ae5a4SJacob Faibussowitsch {
124744a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
124832dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1249ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1250b0a32e0cSBarry Smith   PetscViewer       sviewer;
1251f3ef73ceSBarry Smith   PetscViewerFormat format;
1252416022c9SBarry Smith 
12533a40ed3dSBarry Smith   PetscFunctionBegin;
12549566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12559566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12569566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
125732077d6dSBarry Smith   if (iascii) {
12589566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1259ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
12601690c2aeSBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12619566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12629566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1263ef5fdb51SBarry Smith       for (i = 0; i < (PetscInt)size; i++) {
1264ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1265ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1266ef5fdb51SBarry Smith         navg += nz[i];
1267ef5fdb51SBarry Smith       }
12689566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1269ef5fdb51SBarry Smith       navg = navg / size;
12709566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12713ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1272ef5fdb51SBarry Smith     }
12739566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1274456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12754e220ebcSLois Curfman McInnes       MatInfo   info;
12766335e310SSatish Balay       PetscInt *inodes = NULL;
1277923f20ffSKris Buschelman 
12789566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12799566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12809566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12819566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1282923f20ffSKris Buschelman       if (!inodes) {
12839371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12849371c9d4SSatish Balay                                                      (double)info.memory));
12856831982aSBarry Smith       } else {
12869371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12879371c9d4SSatish Balay                                                      (double)info.memory));
12886831982aSBarry Smith       }
12899566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
12909566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12919566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
12929566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12939566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
12949566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
12959566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
12969566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
12973ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1298fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1299923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13009566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1301923f20ffSKris Buschelman       if (inodes) {
13029566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1303d38fa0fbSBarry Smith       } else {
13049566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1305d38fa0fbSBarry Smith       }
13063ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13074aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13083ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
130908480c60SBarry Smith     }
13108e2fed03SBarry Smith   } else if (isbinary) {
13118e2fed03SBarry Smith     if (size == 1) {
13129566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13139566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13148e2fed03SBarry Smith     } else {
13159566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13168e2fed03SBarry Smith     }
13173ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
131871e56450SStefano Zampini   } else if (iascii && size == 1) {
13199566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13209566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13213ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13220f5bd95cSBarry Smith   } else if (isdraw) {
1323b0a32e0cSBarry Smith     PetscDraw draw;
1324ace3abfcSBarry Smith     PetscBool isnull;
13259566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13269566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13273ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
132819bcc07fSBarry Smith   }
132919bcc07fSBarry Smith 
133071e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
133171e56450SStefano Zampini     Mat A = NULL, Av;
133271e56450SStefano Zampini     IS  isrow, iscol;
13332ee70a88SLois Curfman McInnes 
13349566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13359566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13369566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13379566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
133871e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
133971e56450SStefano Zampini     /*
134071e56450SStefano Zampini     Mat *AA, A = NULL, Av;
134171e56450SStefano Zampini     IS  isrow,iscol;
134271e56450SStefano Zampini 
13439566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13449566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13459566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1346dd400576SPatrick Sanan     if (rank == 0) {
13479566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
134871e56450SStefano Zampini        A    = AA[0];
134971e56450SStefano Zampini        Av   = AA[0];
135095373324SBarry Smith     }
13519566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
135271e56450SStefano Zampini */
13539566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13549566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
135555843e3eSBarry Smith     /*
135655843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1357b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
135855843e3eSBarry Smith     */
13599566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1360dd400576SPatrick Sanan     if (rank == 0) {
136148a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13629566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
136395373324SBarry Smith     }
13649566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13659566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
136695373324SBarry Smith   }
13673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13681eb62cbbSBarry Smith }
13691eb62cbbSBarry Smith 
1370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1371d71ae5a4SJacob Faibussowitsch {
1372ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1373416022c9SBarry Smith 
13743a40ed3dSBarry Smith   PetscFunctionBegin;
13759566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13769566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13779566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13789566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
137948a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1381416022c9SBarry Smith }
1382416022c9SBarry Smith 
1383ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1384d71ae5a4SJacob Faibussowitsch {
138544a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1386f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1387ace3abfcSBarry Smith   PetscBool   hasop;
13888a729477SBarry Smith 
13893a40ed3dSBarry Smith   PetscFunctionBegin;
1390a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
13919566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
13923ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1393a2b30743SBarry Smith   }
1394a2b30743SBarry Smith 
139548a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
13964e980039SJed Brown 
1397c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1398da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
13999566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14002798e883SHong Zhang       its--;
1401da3a660dSBarry Smith     }
14022798e883SHong Zhang 
14032798e883SHong Zhang     while (its--) {
14049566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14059566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14062798e883SHong Zhang 
1407c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14089566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14099566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14102798e883SHong Zhang 
1411c14dc6b6SHong Zhang       /* local sweep */
14129566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14132798e883SHong Zhang     }
14143a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1415da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14169566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14172798e883SHong Zhang       its--;
1418da3a660dSBarry Smith     }
14192798e883SHong Zhang     while (its--) {
14209566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14219566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14222798e883SHong Zhang 
1423c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14249566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14259566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1426c14dc6b6SHong Zhang 
1427c14dc6b6SHong Zhang       /* local sweep */
14289566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14292798e883SHong Zhang     }
14303a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1431da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14329566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14332798e883SHong Zhang       its--;
1434da3a660dSBarry Smith     }
14352798e883SHong Zhang     while (its--) {
14369566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14379566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14382798e883SHong Zhang 
1439c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14409566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14419566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14422798e883SHong Zhang 
1443c14dc6b6SHong Zhang       /* local sweep */
14449566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14452798e883SHong Zhang     }
1446a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1447a7420bb7SBarry Smith     Vec xx1;
1448a7420bb7SBarry Smith 
14499566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14509566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1451a7420bb7SBarry Smith 
14529566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14539566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1454a7420bb7SBarry Smith     if (!mat->diag) {
14559566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14569566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1457a7420bb7SBarry Smith     }
14589566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1459bd0c2dcbSBarry Smith     if (hasop) {
14609566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1461bd0c2dcbSBarry Smith     } else {
14629566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1463bd0c2dcbSBarry Smith     }
14649566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1465887ee2caSBarry Smith 
14669566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1467a7420bb7SBarry Smith 
1468a7420bb7SBarry Smith     /* local sweep */
14699566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14709566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14719566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1472ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1473c14dc6b6SHong Zhang 
14749566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1475a0808db4SHong Zhang 
14767b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14788a729477SBarry Smith }
1479a66be287SLois Curfman McInnes 
1480ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1481d71ae5a4SJacob Faibussowitsch {
148272e6a0cfSJed Brown   Mat             aA, aB, Aperm;
148372e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
148472e6a0cfSJed Brown   PetscScalar    *aa, *ba;
148572e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
148672e6a0cfSJed Brown   PetscSF         rowsf, sf;
14870298fd71SBarry Smith   IS              parcolp = NULL;
148872e6a0cfSJed Brown   PetscBool       done;
148942e855d1Svictor 
149042e855d1Svictor   PetscFunctionBegin;
14919566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
14929566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
14939566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
14949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
149572e6a0cfSJed Brown 
149672e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
14979566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
14989566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
14999566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
150072e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15019566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15029566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
150372e6a0cfSJed Brown 
150472e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15059566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15069566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15079566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
150872e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15099566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15109566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15119566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
151272e6a0cfSJed Brown 
15139566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15149566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15159566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
151672e6a0cfSJed Brown 
151772e6a0cfSJed Brown   /* Find out where my gcols should go */
15189566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15209566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15219566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15249566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15259566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152672e6a0cfSJed Brown 
15279566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15289566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15299566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
153072e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1531131c27b5Sprj-     PetscInt    row = rdest[i];
1532131c27b5Sprj-     PetscMPIInt rowner;
15339566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
153472e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1535131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1536131c27b5Sprj-       PetscMPIInt cowner;
15379566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
153872e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
153972e6a0cfSJed Brown       else onnz[i]++;
154072e6a0cfSJed Brown     }
154172e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1542131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1543131c27b5Sprj-       PetscMPIInt cowner;
15449566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
154572e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
154672e6a0cfSJed Brown       else onnz[i]++;
154772e6a0cfSJed Brown     }
154872e6a0cfSJed Brown   }
15499566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15509566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15519566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15529566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15539566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
155472e6a0cfSJed Brown 
15559566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15579566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
155872e6a0cfSJed Brown   for (i = 0; i < m; i++) {
155972e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1560970468b0SJed Brown     PetscInt  j0, rowlen;
156172e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1562970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1563970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15649566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1565970468b0SJed Brown     }
156672e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1567970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1568970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15699566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1570970468b0SJed Brown     }
157172e6a0cfSJed Brown   }
15729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15749566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15759566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15769566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15789566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15799566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15809566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15819566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
158272e6a0cfSJed Brown   *B = Aperm;
15833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
158442e855d1Svictor }
158542e855d1Svictor 
1586ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1587d71ae5a4SJacob Faibussowitsch {
1588c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1589c5e4d11fSDmitry Karpeev 
1590c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
15919566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1592c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
15933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1594c5e4d11fSDmitry Karpeev }
1595c5e4d11fSDmitry Karpeev 
1596ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1597d71ae5a4SJacob Faibussowitsch {
1598a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1599a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16003966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1601a66be287SLois Curfman McInnes 
16023a40ed3dSBarry Smith   PetscFunctionBegin;
16034e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16049566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16052205254eSKarl Rupp 
16069371c9d4SSatish Balay   isend[0] = info->nz_used;
16079371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16089371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16099371c9d4SSatish Balay   isend[3] = info->memory;
16109371c9d4SSatish Balay   isend[4] = info->mallocs;
16112205254eSKarl Rupp 
16129566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16132205254eSKarl Rupp 
16149371c9d4SSatish Balay   isend[0] += info->nz_used;
16159371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16169371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16179371c9d4SSatish Balay   isend[3] += info->memory;
16189371c9d4SSatish Balay   isend[4] += info->mallocs;
1619a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16204e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16214e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16224e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16234e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16244e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1625a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1626462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16272205254eSKarl Rupp 
16284e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16294e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16304e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16314e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16324e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1633a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1634462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16352205254eSKarl Rupp 
16364e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16374e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16384e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16394e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16404e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1641a66be287SLois Curfman McInnes   }
16424e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16434e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16444e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1646a66be287SLois Curfman McInnes }
1647a66be287SLois Curfman McInnes 
1648d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1649d71ae5a4SJacob Faibussowitsch {
1650c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1651c74985f6SBarry Smith 
16523a40ed3dSBarry Smith   PetscFunctionBegin;
165312c028f9SKris Buschelman   switch (op) {
1654512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
165512c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
165628b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1657a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
165812c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16590ad02fcaSStefano Zampini   case MAT_USE_INODES:
166012c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16611a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1662fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16639566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16649566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
166512c028f9SKris Buschelman     break;
166612c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
166743674050SBarry Smith     MatCheckPreallocated(A, 1);
16684e0d8c25SBarry Smith     a->roworiented = flg;
16692205254eSKarl Rupp 
16709566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16719566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
167212c028f9SKris Buschelman     break;
16738c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1674d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1675d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1676d71ae5a4SJacob Faibussowitsch     break;
1677d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1678d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1679d71ae5a4SJacob Faibussowitsch     break;
1680c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1681ffa07934SHong Zhang   case MAT_SPD:
168277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
168377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1684bf108f30SBarry Smith   case MAT_HERMITIAN:
1685bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1686b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1687b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1688b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
168977e54ba9SKris Buschelman     break;
1690d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1691d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1692d71ae5a4SJacob Faibussowitsch     break;
1693957cac9fSHong Zhang   case MAT_STRUCTURE_ONLY:
1694957cac9fSHong Zhang     /* The option is handled directly by MatSetOption() */
1695957cac9fSHong Zhang     break;
1696d71ae5a4SJacob Faibussowitsch   default:
1697d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
16983a40ed3dSBarry Smith   }
16993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1700c74985f6SBarry Smith }
1701c74985f6SBarry Smith 
1702d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1703d71ae5a4SJacob Faibussowitsch {
1704154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
170587828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1706d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1707d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1708b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
170939e00950SLois Curfman McInnes 
17103a40ed3dSBarry Smith   PetscFunctionBegin;
171128b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17127a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17137a0afa10SBarry Smith 
171470f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17157a0afa10SBarry Smith     /*
17167a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17177a0afa10SBarry Smith     */
17187a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1719b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1720d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17217a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17222205254eSKarl Rupp       if (max < tmp) max = tmp;
17237a0afa10SBarry Smith     }
17249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17257a0afa10SBarry Smith   }
17267a0afa10SBarry Smith 
1727aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1728abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
172939e00950SLois Curfman McInnes 
17309371c9d4SSatish Balay   pvA = &vworkA;
17319371c9d4SSatish Balay   pcA = &cworkA;
17329371c9d4SSatish Balay   pvB = &vworkB;
17339371c9d4SSatish Balay   pcB = &cworkB;
17349371c9d4SSatish Balay   if (!v) {
17359371c9d4SSatish Balay     pvA = NULL;
17369371c9d4SSatish Balay     pvB = NULL;
17379371c9d4SSatish Balay   }
17389371c9d4SSatish Balay   if (!idx) {
17399371c9d4SSatish Balay     pcA = NULL;
17409371c9d4SSatish Balay     if (!v) pcB = NULL;
17419371c9d4SSatish Balay   }
17429566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17439566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1744154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1745154123eaSLois Curfman McInnes 
174670f0671dSBarry Smith   cmap = mat->garray;
1747154123eaSLois Curfman McInnes   if (v || idx) {
1748154123eaSLois Curfman McInnes     if (nztot) {
1749154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1750b1d57f15SBarry Smith       PetscInt imark = -1;
1751154123eaSLois Curfman McInnes       if (v) {
175270f0671dSBarry Smith         *v = v_p = mat->rowvalues;
175339e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
175470f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1755154123eaSLois Curfman McInnes           else break;
1756154123eaSLois Curfman McInnes         }
1757154123eaSLois Curfman McInnes         imark = i;
175870f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
175970f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1760154123eaSLois Curfman McInnes       }
1761154123eaSLois Curfman McInnes       if (idx) {
176270f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
176370f0671dSBarry Smith         if (imark > -1) {
1764ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
176570f0671dSBarry Smith         } else {
1766154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
176770f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1768154123eaSLois Curfman McInnes             else break;
1769154123eaSLois Curfman McInnes           }
1770154123eaSLois Curfman McInnes           imark = i;
177170f0671dSBarry Smith         }
177270f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
177370f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
177439e00950SLois Curfman McInnes       }
17753f97c4b0SBarry Smith     } else {
1776f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1777f4259b30SLisandro Dalcin       if (v) *v = NULL;
17781ca473b0SSatish Balay     }
1779154123eaSLois Curfman McInnes   }
178039e00950SLois Curfman McInnes   *nz = nztot;
17819566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17829566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
178439e00950SLois Curfman McInnes }
178539e00950SLois Curfman McInnes 
1786d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1787d71ae5a4SJacob Faibussowitsch {
17887a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
17893a40ed3dSBarry Smith 
17903a40ed3dSBarry Smith   PetscFunctionBegin;
179128b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
17927a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
17933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179439e00950SLois Curfman McInnes }
179539e00950SLois Curfman McInnes 
1796ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1797d71ae5a4SJacob Faibussowitsch {
1798855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1799ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1800d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1801329f5518SBarry Smith   PetscReal        sum = 0.0;
1802fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
18036497c311SBarry Smith   PetscMPIInt      iN;
180404ca555eSLois Curfman McInnes 
18053a40ed3dSBarry Smith   PetscFunctionBegin;
180617699dbbSLois Curfman McInnes   if (aij->size == 1) {
18079566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
180837fa93a5SLois Curfman McInnes   } else {
18099566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18109566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
181104ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1812fff043a9SJunchao Zhang       v = amata;
181304ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18149371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18159371c9d4SSatish Balay         v++;
181604ca555eSLois Curfman McInnes       }
1817fff043a9SJunchao Zhang       v = bmata;
181804ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18199371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18209371c9d4SSatish Balay         v++;
182104ca555eSLois Curfman McInnes       }
1822462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18238f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18249566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18253a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1826329f5518SBarry Smith       PetscReal *tmp, *tmp2;
1827b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18289566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
18299566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2));
183004ca555eSLois Curfman McInnes       *norm = 0.0;
18319371c9d4SSatish Balay       v     = amata;
18329371c9d4SSatish Balay       jj    = amat->j;
183304ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18349371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18359371c9d4SSatish Balay         v++;
183604ca555eSLois Curfman McInnes       }
18379371c9d4SSatish Balay       v  = bmata;
18389371c9d4SSatish Balay       jj = bmat->j;
183904ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18409371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18419371c9d4SSatish Balay         v++;
184204ca555eSLois Curfman McInnes       }
18436497c311SBarry Smith       PetscCall(PetscMPIIntCast(mat->cmap->N, &iN));
1844462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(tmp, tmp2, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1845d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
184604ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
184704ca555eSLois Curfman McInnes       }
18489566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18499566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
18509566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18513a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1852329f5518SBarry Smith       PetscReal ntemp = 0.0;
1853d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18548e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
185504ca555eSLois Curfman McInnes         sum = 0.0;
185604ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18579371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18589371c9d4SSatish Balay           v++;
185904ca555eSLois Curfman McInnes         }
18608e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
186104ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18629371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18639371c9d4SSatish Balay           v++;
186404ca555eSLois Curfman McInnes         }
1865515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
186604ca555eSLois Curfman McInnes       }
1867462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18689566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1869ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18709566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18719566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
187237fa93a5SLois Curfman McInnes   }
18733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1874855ac2c5SLois Curfman McInnes }
1875855ac2c5SLois Curfman McInnes 
1876ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1877d71ae5a4SJacob Faibussowitsch {
1878a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1879a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1880071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1881071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1882a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1883ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1884b7c46309SBarry Smith 
18853a40ed3dSBarry Smith   PetscFunctionBegin;
18867fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18879371c9d4SSatish Balay   ma = A->rmap->n;
18889371c9d4SSatish Balay   na = A->cmap->n;
18899371c9d4SSatish Balay   mb = a->B->rmap->n;
18909371c9d4SSatish Balay   nb = a->B->cmap->n;
18919371c9d4SSatish Balay   ai = Aloc->i;
18929371c9d4SSatish Balay   aj = Aloc->j;
18939371c9d4SSatish Balay   bi = Bloc->i;
18949371c9d4SSatish Balay   bj = Bloc->j;
1895fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
189680bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
189780bcc5a1SJed Brown     PetscSFNode         *oloc;
1898713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
189980bcc5a1SJed Brown 
19009566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
190180bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19029566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1903cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
190480bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19059566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
190680bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
190780bcc5a1SJed Brown     /* map those to global */
19089566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19099566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19109566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19119566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
191257168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
191357168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19149566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1915d4bb536fSBarry Smith 
19169566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19179566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
19189566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs)));
19199566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19209566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19219566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1922fc4dec0aSBarry Smith   } else {
1923fc4dec0aSBarry Smith     B = *matout;
19249566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1925fc4dec0aSBarry Smith   }
1926b7c46309SBarry Smith 
1927f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1928a8661f62Sandi selinger   A_diag      = a->A;
1929a8661f62Sandi selinger   B_diag      = &b->A;
1930a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1931a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1932a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1933a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1934f79cb1a0Sandi selinger 
1935f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1936ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1937f79cb1a0Sandi selinger 
19384cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1939a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19407fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19419566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1942f79cb1a0Sandi selinger 
1943b7c46309SBarry Smith   /* copy over the B part */
19449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1946ce496241SStefano Zampini   pbv = bv;
1947d0f46423SBarry Smith   row = A->rmap->rstart;
19482205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
194961a2fbbaSHong Zhang   cols_tmp = cols;
1950da668accSHong Zhang   for (i = 0; i < mb; i++) {
1951da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19529566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19532205254eSKarl Rupp     row++;
1954720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1955720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1956b7c46309SBarry Smith   }
19579566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19589566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1959fc73b1b3SBarry Smith 
19609566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19619566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1962cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19630de55854SLois Curfman McInnes     *matout = B;
19640de55854SLois Curfman McInnes   } else {
19659566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19660de55854SLois Curfman McInnes   }
19673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1968b7c46309SBarry Smith }
1969b7c46309SBarry Smith 
1970ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1971d71ae5a4SJacob Faibussowitsch {
19724b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19734b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1974b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1975a008b906SSatish Balay 
19763a40ed3dSBarry Smith   PetscFunctionBegin;
19779566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19784b967eb1SSatish Balay   if (rr) {
19799566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
198008401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19814b967eb1SSatish Balay     /* Overlap communication with computation. */
19829566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1983a008b906SSatish Balay   }
19844b967eb1SSatish Balay   if (ll) {
19859566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
198608401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1987dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19884b967eb1SSatish Balay   }
19894b967eb1SSatish Balay   /* scale  the diagonal block */
1990dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19914b967eb1SSatish Balay 
19924b967eb1SSatish Balay   if (rr) {
19934b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
19949566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1995dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
19964b967eb1SSatish Balay   }
19973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1998a008b906SSatish Balay }
1999a008b906SSatish Balay 
2000ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2001d71ae5a4SJacob Faibussowitsch {
2002bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20033a40ed3dSBarry Smith 
20043a40ed3dSBarry Smith   PetscFunctionBegin;
20059566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2007bb5a7306SBarry Smith }
2008bb5a7306SBarry Smith 
2009ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2010d71ae5a4SJacob Faibussowitsch {
2011d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2012d4bb536fSBarry Smith   Mat         a, b, c, d;
2013ace3abfcSBarry Smith   PetscBool   flg;
2014d4bb536fSBarry Smith 
20153a40ed3dSBarry Smith   PetscFunctionBegin;
20169371c9d4SSatish Balay   a = matA->A;
20179371c9d4SSatish Balay   b = matA->B;
20189371c9d4SSatish Balay   c = matB->A;
20199371c9d4SSatish Balay   d = matB->B;
2020d4bb536fSBarry Smith 
20219566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
202248a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
2023462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2025d4bb536fSBarry Smith }
2026d4bb536fSBarry Smith 
2027ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2028d71ae5a4SJacob Faibussowitsch {
2029cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2030cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2031cb5b572fSBarry Smith 
2032cb5b572fSBarry Smith   PetscFunctionBegin;
203333f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
203433f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2035cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2036cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2037cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2038cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2039cb5b572fSBarry Smith        then copying the submatrices */
20409566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2041cb5b572fSBarry Smith   } else {
20429566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20439566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2044cb5b572fSBarry Smith   }
20459566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2047cb5b572fSBarry Smith }
2048cb5b572fSBarry Smith 
2049001ddc4fSHong Zhang /*
2050001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2051001ddc4fSHong Zhang    have different nonzero structure.
2052001ddc4fSHong Zhang */
2053d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2054d71ae5a4SJacob Faibussowitsch {
2055001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
205695b7e79eSJed Brown 
205795b7e79eSJed Brown   PetscFunctionBegin;
205895b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
205995b7e79eSJed Brown   for (i = 0; i < m; i++) {
20608e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2061001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2062001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
206395b7e79eSJed Brown     nnz[i] = 0;
206495b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2065001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2066001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
206795b7e79eSJed Brown       nnz[i]++;
206895b7e79eSJed Brown     }
206995b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
207095b7e79eSJed Brown   }
20713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207295b7e79eSJed Brown }
207395b7e79eSJed Brown 
2074001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2075d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2076d71ae5a4SJacob Faibussowitsch {
2077001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2078001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2079001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2080001ddc4fSHong Zhang 
2081001ddc4fSHong Zhang   PetscFunctionBegin;
20829566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2084001ddc4fSHong Zhang }
2085001ddc4fSHong Zhang 
2086ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2087d71ae5a4SJacob Faibussowitsch {
2088ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2089ac90fabeSBarry Smith 
2090ac90fabeSBarry Smith   PetscFunctionBegin;
2091ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20929566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
20939566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2094ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
20959566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2096ac90fabeSBarry Smith   } else {
20979f5f6813SShri Abhyankar     Mat       B;
20989f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2099d9d719b4SStefano Zampini 
21009566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21019566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21029566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21039566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21049566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21059566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21069566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21079566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21089566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21099566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21109566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21119566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21129566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2113ac90fabeSBarry Smith   }
21143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2115ac90fabeSBarry Smith }
2116ac90fabeSBarry Smith 
21172726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2118354c94deSBarry Smith 
2119ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2120d71ae5a4SJacob Faibussowitsch {
21215f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21225f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2123354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2124354c94deSBarry Smith 
21259566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21269566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21275f80ce2aSJacob Faibussowitsch   }
21283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2129354c94deSBarry Smith }
2130354c94deSBarry Smith 
2131ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2132d71ae5a4SJacob Faibussowitsch {
213399cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
213499cafbc1SBarry Smith 
213599cafbc1SBarry Smith   PetscFunctionBegin;
21369566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21379566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
213999cafbc1SBarry Smith }
214099cafbc1SBarry Smith 
2141ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2142d71ae5a4SJacob Faibussowitsch {
214399cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214499cafbc1SBarry Smith 
214599cafbc1SBarry Smith   PetscFunctionBegin;
21469566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21479566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214999cafbc1SBarry Smith }
215099cafbc1SBarry Smith 
2151ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2152d71ae5a4SJacob Faibussowitsch {
2153c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2154475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
2155475b8b61SHong Zhang   PetscScalar       *va, *vv;
2156475b8b61SHong Zhang   Vec                vB, vA;
2157475b8b61SHong Zhang   const PetscScalar *vb;
2158c91732d9SHong Zhang 
2159c91732d9SHong Zhang   PetscFunctionBegin;
2160c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21619566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2162475b8b61SHong Zhang 
21639566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
2164c91732d9SHong Zhang   if (idx) {
2165475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2166d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2167c91732d9SHong Zhang     }
2168c91732d9SHong Zhang   }
2169c91732d9SHong Zhang 
2170c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21729566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2173c91732d9SHong Zhang 
21749566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21759566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2176475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2177c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2178475b8b61SHong Zhang       vv[i] = vb[i];
2179c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2180475b8b61SHong Zhang     } else {
2181475b8b61SHong Zhang       vv[i] = va[i];
21829371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2183c91732d9SHong Zhang     }
2184c91732d9SHong Zhang   }
21859566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
21869566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
21879566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21889566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21899566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21909566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2192c91732d9SHong Zhang }
2193c91732d9SHong Zhang 
2194eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2195eede4a3fSMark Adams {
2196eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2197eede4a3fSMark Adams   Vec         vB, vA;
2198eede4a3fSMark Adams 
2199eede4a3fSMark Adams   PetscFunctionBegin;
2200c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2201eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2202c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2203eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2204eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2205eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2206eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2207eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2208eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2209eede4a3fSMark Adams }
2210eede4a3fSMark Adams 
2211ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2212d71ae5a4SJacob Faibussowitsch {
2213f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2214f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2215f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2216f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2217f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2218f07e67edSHong Zhang   Vec                diagV, offdiagV;
2219ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2220ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2221f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2222f07e67edSHong Zhang   Mat                B = mat->B;
2223f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2224c87e5d42SMatthew Knepley 
2225c87e5d42SMatthew Knepley   PetscFunctionBegin;
2226f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2227f07e67edSHong Zhang   if (A->cmap->N == n) {
22289566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22299566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22309566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22319566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22329566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22333ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2234f07e67edSHong Zhang   } else if (n == 0) {
2235f07e67edSHong Zhang     if (m) {
22369566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22379371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22389371c9d4SSatish Balay         a[r] = 0.0;
22399371c9d4SSatish Balay         if (idx) idx[r] = -1;
22409371c9d4SSatish Balay       }
22419566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2242f07e67edSHong Zhang     }
22433ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2244f07e67edSHong Zhang   }
2245f07e67edSHong Zhang 
22469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22479566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22489566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22499566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2250f07e67edSHong Zhang 
2251f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2253ce496241SStefano Zampini   ba = bav;
2254f07e67edSHong Zhang   bi = b->i;
2255f07e67edSHong Zhang   bj = b->j;
22569566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2257f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2258f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2259f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22609371c9d4SSatish Balay       offdiagA[r]   = *ba;
22619371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2262f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2263f07e67edSHong Zhang       offdiagA[r] = 0.0;
2264f07e67edSHong Zhang 
2265f07e67edSHong Zhang       /* Find first hole in the cmap */
2266f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2267f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2268f07e67edSHong Zhang         if (col > j && j < cstart) {
2269f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2270f07e67edSHong Zhang           break;
2271f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2272f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2273f07e67edSHong Zhang           break;
2274f07e67edSHong Zhang         }
2275f07e67edSHong Zhang       }
22764e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2277f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2278f07e67edSHong Zhang         if (ncols == 0) {
2279f07e67edSHong Zhang           if (cstart) {
2280f07e67edSHong Zhang             offdiagIdx[r] = 0;
2281f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2282f07e67edSHong Zhang         } else { /* ncols > 0 */
2283f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2284f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2285f07e67edSHong Zhang         }
2286f07e67edSHong Zhang       }
2287f07e67edSHong Zhang     }
2288f07e67edSHong Zhang 
2289f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22909371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22919371c9d4SSatish Balay         offdiagA[r]   = *ba;
22929371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
22939371c9d4SSatish Balay       }
22949371c9d4SSatish Balay       ba++;
22959371c9d4SSatish Balay       bj++;
2296f07e67edSHong Zhang     }
2297f07e67edSHong Zhang   }
2298f07e67edSHong Zhang 
22999566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23009566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2301f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2302f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2303f07e67edSHong Zhang       a[r] = diagA[r];
2304f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2305f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2306f07e67edSHong Zhang       a[r] = diagA[r];
2307c87e5d42SMatthew Knepley       if (idx) {
2308f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2309f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2310f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2311f07e67edSHong Zhang       }
2312f07e67edSHong Zhang     } else {
2313f07e67edSHong Zhang       a[r] = offdiagA[r];
2314f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2315c87e5d42SMatthew Knepley     }
2316c87e5d42SMatthew Knepley   }
23179566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23189566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23199566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23209566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23229566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23239566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2325c87e5d42SMatthew Knepley }
2326c87e5d42SMatthew Knepley 
2327ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2328d71ae5a4SJacob Faibussowitsch {
232903bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2330fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2331fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
233203bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
233303bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
233403bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2335ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2336ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2337fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2338fa213d2fSHong Zhang   Mat                B = mat->B;
2339fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
234003bc72f1SMatthew Knepley 
234103bc72f1SMatthew Knepley   PetscFunctionBegin;
2342fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2343fa213d2fSHong Zhang   if (A->cmap->N == n) {
23449566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23459566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23469566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23479566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23489566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23493ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2350fa213d2fSHong Zhang   } else if (n == 0) {
2351fa213d2fSHong Zhang     if (m) {
23529566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23539371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23549371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23559371c9d4SSatish Balay         if (idx) idx[r] = -1;
23569371c9d4SSatish Balay       }
23579566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2358fa213d2fSHong Zhang     }
23593ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2360fa213d2fSHong Zhang   }
2361fa213d2fSHong Zhang 
23629566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23639566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23649566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23659566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2366fa213d2fSHong Zhang 
2367fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2369ce496241SStefano Zampini   ba = bav;
2370fa213d2fSHong Zhang   bi = b->i;
2371fa213d2fSHong Zhang   bj = b->j;
23729566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2373fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2374fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2375fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23769371c9d4SSatish Balay       offdiagA[r]   = *ba;
23779371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2378fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2379fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2380fa213d2fSHong Zhang 
2381fa213d2fSHong Zhang       /* Find first hole in the cmap */
2382fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2383fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2384fa213d2fSHong Zhang         if (col > j && j < cstart) {
2385fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2386fa213d2fSHong Zhang           break;
2387fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2388fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2389fa213d2fSHong Zhang           break;
2390fa213d2fSHong Zhang         }
2391fa213d2fSHong Zhang       }
23924e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2393fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2394fa213d2fSHong Zhang         if (ncols == 0) {
2395fa213d2fSHong Zhang           if (cstart) {
2396fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2397fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2398fa213d2fSHong Zhang         } else { /* ncols > 0 */
2399fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2400fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2401fa213d2fSHong Zhang         }
2402fa213d2fSHong Zhang       }
2403fa213d2fSHong Zhang     }
2404fa213d2fSHong Zhang 
2405fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24069371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24079371c9d4SSatish Balay         offdiagA[r]   = *ba;
24089371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24099371c9d4SSatish Balay       }
24109371c9d4SSatish Balay       ba++;
24119371c9d4SSatish Balay       bj++;
2412fa213d2fSHong Zhang     }
2413fa213d2fSHong Zhang   }
2414fa213d2fSHong Zhang 
24159566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24169566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2417fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2418fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
241903bc72f1SMatthew Knepley       a[r] = diagA[r];
2420fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2421fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2422fa213d2fSHong Zhang       a[r] = diagA[r];
2423fa213d2fSHong Zhang       if (idx) {
2424fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
242503bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2426fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2427fa213d2fSHong Zhang       }
242803bc72f1SMatthew Knepley     } else {
242903bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2430fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
243103bc72f1SMatthew Knepley     }
243203bc72f1SMatthew Knepley   }
24339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24349566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24359566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24369566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24379566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24389566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24399566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244103bc72f1SMatthew Knepley }
244203bc72f1SMatthew Knepley 
2443ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2444d71ae5a4SJacob Faibussowitsch {
2445c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24461a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24471a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2448c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2449c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2450c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2451ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2452ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24531a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24541a254869SHong Zhang   Mat                B = mat->B;
24551a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2456c87e5d42SMatthew Knepley 
2457c87e5d42SMatthew Knepley   PetscFunctionBegin;
24581a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24591a254869SHong Zhang   if (A->cmap->N == n) {
24609566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24619566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24629566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24639566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24649566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24653ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24661a254869SHong Zhang   } else if (n == 0) {
24671a254869SHong Zhang     if (m) {
24689566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24699371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24709371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24719371c9d4SSatish Balay         if (idx) idx[r] = -1;
24729371c9d4SSatish Balay       }
24739566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24741a254869SHong Zhang     }
24753ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24761a254869SHong Zhang   }
24771a254869SHong Zhang 
24789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24799566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24809566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24819566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24821a254869SHong Zhang 
24831a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24849566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2485ce496241SStefano Zampini   ba = bav;
24861a254869SHong Zhang   bi = b->i;
24871a254869SHong Zhang   bj = b->j;
24889566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24891a254869SHong Zhang   for (r = 0; r < m; r++) {
24901a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24911a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24929371c9d4SSatish Balay       offdiagA[r]   = *ba;
24939371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
24941a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
24951a254869SHong Zhang       offdiagA[r] = 0.0;
24961a254869SHong Zhang 
24971a254869SHong Zhang       /* Find first hole in the cmap */
24981a254869SHong Zhang       for (j = 0; j < ncols; j++) {
24991a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25001a254869SHong Zhang         if (col > j && j < cstart) {
25011a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25021a254869SHong Zhang           break;
25031a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25041a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25051a254869SHong Zhang           break;
25061a254869SHong Zhang         }
25071a254869SHong Zhang       }
25084e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25091a254869SHong Zhang         /* a hole is outside compressed Bcols */
25101a254869SHong Zhang         if (ncols == 0) {
25111a254869SHong Zhang           if (cstart) {
25121a254869SHong Zhang             offdiagIdx[r] = 0;
25131a254869SHong Zhang           } else offdiagIdx[r] = cend;
25141a254869SHong Zhang         } else { /* ncols > 0 */
25151a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25161a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25171a254869SHong Zhang         }
25181a254869SHong Zhang       }
25191a254869SHong Zhang     }
25201a254869SHong Zhang 
25211a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25229371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25239371c9d4SSatish Balay         offdiagA[r]   = *ba;
25249371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25259371c9d4SSatish Balay       }
25269371c9d4SSatish Balay       ba++;
25279371c9d4SSatish Balay       bj++;
25281a254869SHong Zhang     }
25291a254869SHong Zhang   }
25301a254869SHong Zhang 
25319566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25329566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25331a254869SHong Zhang   for (r = 0; r < m; ++r) {
25341a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2535c87e5d42SMatthew Knepley       a[r] = diagA[r];
25361a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25371a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25381a254869SHong Zhang       a[r] = diagA[r];
25391a254869SHong Zhang       if (idx) {
25401a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2541c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25421a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25431a254869SHong Zhang       }
2544c87e5d42SMatthew Knepley     } else {
2545c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25461a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2547c87e5d42SMatthew Knepley     }
2548c87e5d42SMatthew Knepley   }
25499566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25509566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25519566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25529566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25549566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25559566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2557c87e5d42SMatthew Knepley }
2558c87e5d42SMatthew Knepley 
2559d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2560d71ae5a4SJacob Faibussowitsch {
2561f6d58c54SBarry Smith   Mat *dummy;
25625494a064SHong Zhang 
25635494a064SHong Zhang   PetscFunctionBegin;
25649566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2565f6d58c54SBarry Smith   *newmat = *dummy;
25669566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25685494a064SHong Zhang }
25695494a064SHong Zhang 
2570ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2571d71ae5a4SJacob Faibussowitsch {
2572bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2573bbead8a2SBarry Smith 
2574bbead8a2SBarry Smith   PetscFunctionBegin;
25759566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25767b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2578bbead8a2SBarry Smith }
2579bbead8a2SBarry Smith 
2580d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2581d71ae5a4SJacob Faibussowitsch {
258273a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
258373a71a0fSBarry Smith 
258473a71a0fSBarry Smith   PetscFunctionBegin;
258508401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25869566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2587679944adSJunchao Zhang   if (x->assembled) {
25889566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2589679944adSJunchao Zhang   } else {
25909566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2591679944adSJunchao Zhang   }
25929566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
25939566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
25943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
259573a71a0fSBarry Smith }
2596bbead8a2SBarry Smith 
2597ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2598d71ae5a4SJacob Faibussowitsch {
2599b1b1104fSBarry Smith   PetscFunctionBegin;
2600b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2601b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2603b1b1104fSBarry Smith }
2604b1b1104fSBarry Smith 
2605b1b1104fSBarry Smith /*@
2606f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2607f2afee66SBarry Smith 
26082ef1f0ffSBarry Smith   Not Collective
2609f2afee66SBarry Smith 
2610f2afee66SBarry Smith   Input Parameter:
2611f2afee66SBarry Smith . A - the matrix
2612f2afee66SBarry Smith 
2613f2afee66SBarry Smith   Output Parameter:
2614f2afee66SBarry Smith . nz - the number of nonzeros
2615f2afee66SBarry Smith 
2616f2afee66SBarry Smith   Level: advanced
2617f2afee66SBarry Smith 
2618fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2619f2afee66SBarry Smith @*/
2620d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2621d71ae5a4SJacob Faibussowitsch {
2622f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2623f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2624dfebb78cSStefano Zampini   PetscBool   isaij;
2625f2afee66SBarry Smith 
2626f2afee66SBarry Smith   PetscFunctionBegin;
2627dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2628dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2629f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2631f2afee66SBarry Smith }
2632f2afee66SBarry Smith 
2633f2afee66SBarry Smith /*@
2634b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2635b1b1104fSBarry Smith 
2636c3339decSBarry Smith   Collective
2637b1b1104fSBarry Smith 
2638b1b1104fSBarry Smith   Input Parameters:
2639b1b1104fSBarry Smith + A  - the matrix
264011a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2641b1b1104fSBarry Smith 
264296a0c994SBarry Smith   Level: advanced
264396a0c994SBarry Smith 
2644fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2645b1b1104fSBarry Smith @*/
2646d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2647d71ae5a4SJacob Faibussowitsch {
2648b1b1104fSBarry Smith   PetscFunctionBegin;
2649cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2651b1b1104fSBarry Smith }
2652b1b1104fSBarry Smith 
2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject)
2654d71ae5a4SJacob Faibussowitsch {
2655b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2656b1b1104fSBarry Smith 
2657b1b1104fSBarry Smith   PetscFunctionBegin;
2658d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2659b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26609566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26611baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2662d0609cedSBarry Smith   PetscOptionsHeadEnd();
26633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2664b1b1104fSBarry Smith }
2665b1b1104fSBarry Smith 
2666ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2667d71ae5a4SJacob Faibussowitsch {
26687d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2669c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26707d68702bSBarry Smith 
26717d68702bSBarry Smith   PetscFunctionBegin;
2672c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26739566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26745519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2675b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26769566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2677b83222d8SBarry Smith     aij->nonew = nonew;
26787d68702bSBarry Smith   }
26799566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26817d68702bSBarry Smith }
26827d68702bSBarry Smith 
2683ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2684d71ae5a4SJacob Faibussowitsch {
26853b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26863b49f96aSBarry Smith 
26873b49f96aSBarry Smith   PetscFunctionBegin;
268808401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26899566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26903b49f96aSBarry Smith   if (d) {
26913b49f96aSBarry Smith     PetscInt rstart;
26929566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
26933b49f96aSBarry Smith     *d += rstart;
26943b49f96aSBarry Smith   }
26953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26963b49f96aSBarry Smith }
26973b49f96aSBarry Smith 
2698ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2699d71ae5a4SJacob Faibussowitsch {
2700a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2701a8ee9fb5SBarry Smith 
2702a8ee9fb5SBarry Smith   PetscFunctionBegin;
27039566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2705a8ee9fb5SBarry Smith }
27063b49f96aSBarry Smith 
270758c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2708dec0b466SHong Zhang {
2709dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2710dec0b466SHong Zhang 
2711dec0b466SHong Zhang   PetscFunctionBegin;
271258c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
271358c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2715dec0b466SHong Zhang }
2716dec0b466SHong Zhang 
2717cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2718cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2719cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2720cda55fadSBarry Smith                                        MatMult_MPIAIJ,
272197304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27227c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27237c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2724f4259b30SLisandro Dalcin                                        NULL,
2725f4259b30SLisandro Dalcin                                        NULL,
2726f4259b30SLisandro Dalcin                                        NULL,
2727f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2728f4259b30SLisandro Dalcin                                        NULL,
2729f4259b30SLisandro Dalcin                                        NULL,
273041f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2731b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
273297304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2733cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2734cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2735cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2736cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
273797304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2738cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2739cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2740cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2741d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2742f4259b30SLisandro Dalcin                                        NULL,
2743f4259b30SLisandro Dalcin                                        NULL,
2744f4259b30SLisandro Dalcin                                        NULL,
2745f4259b30SLisandro Dalcin                                        NULL,
274626cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2747f4259b30SLisandro Dalcin                                        NULL,
2748f4259b30SLisandro Dalcin                                        NULL,
2749a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2750f4259b30SLisandro Dalcin                                        NULL,
2751d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2752f4259b30SLisandro Dalcin                                        NULL,
2753f4259b30SLisandro Dalcin                                        NULL,
2754f4259b30SLisandro Dalcin                                        NULL,
2755f4259b30SLisandro Dalcin                                        NULL,
2756d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27577dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2758cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2759cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2760cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2761d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2762cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27637d68702bSBarry Smith                                        MatShift_MPIAIJ,
276499e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2765564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
276673a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27678a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27688a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2769f4259b30SLisandro Dalcin                                        NULL,
2770f4259b30SLisandro Dalcin                                        NULL,
277193dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2772f4259b30SLisandro Dalcin                                        NULL,
2773cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
277472e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2775f4259b30SLisandro Dalcin                                        NULL,
27767dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2777e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2778e03a110bSBarry Smith                                        MatView_MPIAIJ,
2779f4259b30SLisandro Dalcin                                        NULL,
2780f4259b30SLisandro Dalcin                                        NULL,
2781f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2782f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2783f4259b30SLisandro Dalcin                                        NULL,
2784f4259b30SLisandro Dalcin                                        NULL,
2785f4259b30SLisandro Dalcin                                        NULL,
2786d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2787c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2788f4259b30SLisandro Dalcin                                        NULL,
2789f4259b30SLisandro Dalcin                                        NULL,
2790f4259b30SLisandro Dalcin                                        NULL,
2791f4259b30SLisandro Dalcin                                        NULL,
27923acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2793b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2794f4259b30SLisandro Dalcin                                        NULL,
2795f4259b30SLisandro Dalcin                                        NULL,
2796f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2797f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
2799f4259b30SLisandro Dalcin                                        NULL,
28005bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
28016cff0a6bSPierre Jolivet                                        NULL,
2802f4259b30SLisandro Dalcin                                        NULL,
2803f4259b30SLisandro Dalcin                                        NULL,
2804f4259b30SLisandro Dalcin                                        NULL,
2805f4259b30SLisandro Dalcin                                        NULL,
2806f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2807f4259b30SLisandro Dalcin                                        NULL,
280826be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2809f4259b30SLisandro Dalcin                                        NULL,
2810f4259b30SLisandro Dalcin                                        NULL,
2811cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2812f4259b30SLisandro Dalcin                                        NULL,
2813f4259b30SLisandro Dalcin                                        NULL,
2814f4259b30SLisandro Dalcin                                        NULL,
2815b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28164222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2817f4259b30SLisandro Dalcin                                        NULL,
2818f4259b30SLisandro Dalcin                                        NULL,
28192fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2820f4259b30SLisandro Dalcin                                        NULL,
2821d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
282299cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
282369db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2824f4259b30SLisandro Dalcin                                        NULL,
2825f4259b30SLisandro Dalcin                                        NULL,
2826f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2827f4259b30SLisandro Dalcin                                        NULL,
28285494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2829f4259b30SLisandro Dalcin                                        NULL,
28303b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2831d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2832f4259b30SLisandro Dalcin                                        NULL,
2833c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2834f4259b30SLisandro Dalcin                                        NULL,
2835f4259b30SLisandro Dalcin                                        NULL,
2836b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2837f4259b30SLisandro Dalcin                                        NULL,
2838f4259b30SLisandro Dalcin                                        NULL,
2839f4259b30SLisandro Dalcin                                        NULL,
2840b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2841f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2842a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2843bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2844a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28457dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2846f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2847f4259b30SLisandro Dalcin                                        NULL,
2848f4259b30SLisandro Dalcin                                        NULL,
2849187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2850f4259b30SLisandro Dalcin                                        NULL,
2851f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2852f4259b30SLisandro Dalcin                                        NULL,
2853f4259b30SLisandro Dalcin                                        NULL,
2854f4259b30SLisandro Dalcin                                        NULL,
2855f4259b30SLisandro Dalcin                                        NULL,
285646533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2857f4259b30SLisandro Dalcin                                        NULL,
2858f4259b30SLisandro Dalcin                                        NULL,
28599c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2860a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28614222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2862f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2863f4259b30SLisandro Dalcin                                        NULL,
286472833a62Smarkadams4                                        NULL,
286572833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28662d776b49SBarry Smith                                        NULL,
2867dec0b466SHong Zhang                                        /*150*/ NULL,
2868eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
28694cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIAIJ,
287042ce410bSJunchao Zhang                                        NULL,
287142ce410bSJunchao Zhang                                        NULL,
28724cc2b5b5SPierre Jolivet                                        NULL};
287336ce4990SBarry Smith 
2874ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2875d71ae5a4SJacob Faibussowitsch {
28762e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28772e8a6d31SBarry Smith 
28782e8a6d31SBarry Smith   PetscFunctionBegin;
28799566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28809566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28822e8a6d31SBarry Smith }
28832e8a6d31SBarry Smith 
2884ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2885d71ae5a4SJacob Faibussowitsch {
28862e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28872e8a6d31SBarry Smith 
28882e8a6d31SBarry Smith   PetscFunctionBegin;
28899566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28909566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28922e8a6d31SBarry Smith }
28938a729477SBarry Smith 
2894d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2895d71ae5a4SJacob Faibussowitsch {
2896ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
28975d2a9ed1SStefano Zampini   PetscMPIInt size;
2898a23d5eceSKris Buschelman 
2899a23d5eceSKris Buschelman   PetscFunctionBegin;
2900ad79cf63SBarry Smith   if (B->hash_active) {
2901aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2902ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2903ad79cf63SBarry Smith   }
29049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2906899cda47SBarry Smith 
2907cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2908eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2909cb7b82ddSBarry Smith #else
29109566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2911cb7b82ddSBarry Smith #endif
29129566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29139566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29149566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2915cb7b82ddSBarry Smith 
29169566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2917c508b908SBarry Smith 
2918c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29199566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29209566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29219566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29229566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29239566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2924c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2925cb7b82ddSBarry Smith 
2926c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2927ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29289566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29309566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29319566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2932c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2933899cda47SBarry Smith 
29349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29359566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2936526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2937cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
293815001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2940a23d5eceSKris Buschelman }
2941a23d5eceSKris Buschelman 
2942ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2943d71ae5a4SJacob Faibussowitsch {
2944ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2945846b4da1SFande Kong 
2946846b4da1SFande Kong   PetscFunctionBegin;
2947846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29499566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2950eb14dd14SAlex Lindsay   if (B->assembled || B->was_assembled) PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE));
2951eb14dd14SAlex Lindsay   else {
2952846b4da1SFande Kong #if defined(PETSC_USE_CTABLE)
2953eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&b->colmap));
2954846b4da1SFande Kong #else
29559566063dSJacob Faibussowitsch     PetscCall(PetscFree(b->colmap));
2956846b4da1SFande Kong #endif
29579566063dSJacob Faibussowitsch     PetscCall(PetscFree(b->garray));
29589566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&b->lvec));
2959eb14dd14SAlex Lindsay   }
29609566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2961846b4da1SFande Kong 
29629566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->A));
29639566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->B));
2964846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2965846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2966846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
29673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2968846b4da1SFande Kong }
2969846b4da1SFande Kong 
2970d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2971d71ae5a4SJacob Faibussowitsch {
2972d6dfbf8fSBarry Smith   Mat         mat;
2973416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2974d6dfbf8fSBarry Smith 
29753a40ed3dSBarry Smith   PetscFunctionBegin;
2976f4259b30SLisandro Dalcin   *newmat = NULL;
29779566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29789566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29799566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29809566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2981273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2982e1b6402fSHong Zhang 
2983d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2984501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2985e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2986d6dfbf8fSBarry Smith 
298717699dbbSLois Curfman McInnes   a->size         = oldmat->size;
298817699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2989e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2990e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2991501880eeSStefano Zampini   a->rowindices   = NULL;
2992501880eeSStefano Zampini   a->rowvalues    = NULL;
2993bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2994d6dfbf8fSBarry Smith 
29959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2997420957c1SBarry Smith   if (matin->hash_active) {
2998420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2999420957c1SBarry Smith   } else {
3000420957c1SBarry Smith     mat->preallocated = matin->preallocated;
30012ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
3002aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3003eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
3004b1fc9764SSatish Balay #else
30059566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
30069566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3007b1fc9764SSatish Balay #endif
3008501880eeSStefano Zampini     } else a->colmap = NULL;
30093f41c07dSBarry Smith     if (oldmat->garray) {
3010b1d57f15SBarry Smith       PetscInt len;
3011d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30129566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30139566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3014501880eeSStefano Zampini     } else a->garray = NULL;
3015d6dfbf8fSBarry Smith 
30160de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30170de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30180de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3019aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3020cff58d65SJunchao Zhang     if (oldmat->Mvctx) {
3021cff58d65SJunchao Zhang       a->Mvctx = oldmat->Mvctx;
3022cff58d65SJunchao Zhang       PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx));
3023cff58d65SJunchao Zhang     }
30249566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30259566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3026420957c1SBarry Smith   }
30279566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30288a729477SBarry Smith   *newmat = mat;
30293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30308a729477SBarry Smith }
3031416022c9SBarry Smith 
3032d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3033d71ae5a4SJacob Faibussowitsch {
303452f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
303552f91c60SVaclav Hapla 
303652f91c60SVaclav Hapla   PetscFunctionBegin;
303752f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
303852f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3039c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30409566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30419566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30429566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
304352f91c60SVaclav Hapla   if (isbinary) {
30449566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
304552f91c60SVaclav Hapla   } else if (ishdf5) {
304652f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30479566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
304852f91c60SVaclav Hapla #else
304952f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
305052f91c60SVaclav Hapla #endif
305152f91c60SVaclav Hapla   } else {
305298921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
305352f91c60SVaclav Hapla   }
30543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
305552f91c60SVaclav Hapla }
305652f91c60SVaclav Hapla 
3057d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3058d71ae5a4SJacob Faibussowitsch {
30593ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30603ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30613ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30628fb81238SShri Abhyankar 
30638fb81238SShri Abhyankar   PetscFunctionBegin;
30649566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30658fb81238SShri Abhyankar 
30663ea6fe3dSLisandro Dalcin   /* read in matrix header */
30679566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
306808401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30699371c9d4SSatish Balay   M  = header[1];
30709371c9d4SSatish Balay   N  = header[2];
30719371c9d4SSatish Balay   nz = header[3];
307208401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
307308401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
307408401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
307508ea439dSMark F. Adams 
30763ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30779566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30783ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30793ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30803ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30819566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30829566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30838fb81238SShri Abhyankar 
30843ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30859566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3086aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30878fb81238SShri Abhyankar 
30883ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30899566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30919566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30929371c9d4SSatish Balay   rowidxs[0] = 0;
30939371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
30941690c2aeSBarry Smith   if (nz != PETSC_INT_MAX) {
3095462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
309608401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
309738b83642SBarry Smith   }
309838b83642SBarry Smith 
30993ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
31009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
31019566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
31029566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
31033ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
31049566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
31059566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
31069566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
31073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31088fb81238SShri Abhyankar }
31098fb81238SShri Abhyankar 
31103782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3111ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3112d71ae5a4SJacob Faibussowitsch {
31134aa3045dSJed Brown   IS          iscol_local;
3114c5e4d11fSDmitry Karpeev   PetscBool   isstride;
3115c5e4d11fSDmitry Karpeev   PetscMPIInt lisstride = 0, gisstride;
31163782ecc7SHong Zhang 
31173782ecc7SHong Zhang   PetscFunctionBegin;
31183782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31199566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31203782ecc7SHong Zhang 
3121c5e4d11fSDmitry Karpeev   if (isstride) {
3122c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31239566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31249566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31259566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
3126c5e4d11fSDmitry Karpeev     if (mstart == start && mlen - mstart == len) lisstride = 1;
3127c5e4d11fSDmitry Karpeev   }
31283782ecc7SHong Zhang 
3129462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3130c5e4d11fSDmitry Karpeev   if (gisstride) {
3131c5e4d11fSDmitry Karpeev     PetscInt N;
31329566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31339566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31349566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31359566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3136c5e4d11fSDmitry Karpeev   } else {
3137c5bfad50SMark F. Adams     PetscInt cbs;
31389566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31399566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31409566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3141b79d0421SJed Brown   }
31423782ecc7SHong Zhang 
31433782ecc7SHong Zhang   *isseq = iscol_local;
31443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3145c5e4d11fSDmitry Karpeev }
31468d2139bdSHong Zhang 
3147ddfdf956SHong Zhang /*
31489c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31499c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3150ddfdf956SHong Zhang 
3151ddfdf956SHong Zhang  Input Parameters:
315227430b45SBarry Smith +   mat - matrix
315327430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31549c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
315527430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3156ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
315727430b45SBarry Smith 
315827430b45SBarry Smith  Output Parameters:
315927430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
316027430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
316127430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
316227430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3163ddfdf956SHong Zhang  */
3164ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[])
3165d71ae5a4SJacob Faibussowitsch {
3166040216a4SHong Zhang   Vec             x, cmap;
3167040216a4SHong Zhang   const PetscInt *is_idx;
3168040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31699c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3170040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3171040216a4SHong Zhang   Mat             B    = a->B;
3172040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3173a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31748b3fa1f7SHong Zhang   MPI_Comm        comm;
31753a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31763782ecc7SHong Zhang 
31773782ecc7SHong Zhang   PetscFunctionBegin;
31789566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31799566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31808b3fa1f7SHong Zhang 
3181ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31829566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31839566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31849566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31859566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31860a351717SHong Zhang 
31879c988bcaSHong Zhang   /* Get start indices */
31889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3189ddfdf956SHong Zhang   isstart -= ncols;
31909566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3191040216a4SHong Zhang 
31929566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31939566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31949566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31959566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3196ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31978b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3198ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31999c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
32008b3fa1f7SHong Zhang   }
32019566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
32029566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
32039566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
32048b3fa1f7SHong Zhang 
32059c988bcaSHong Zhang   /* Get iscol_d */
32069566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
32079566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
32089566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3209feb78a15SHong Zhang 
32109c988bcaSHong Zhang   /* Get isrow_d */
32119566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3212feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32139566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32149566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32159c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32169566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3217feb78a15SHong Zhang 
32189566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32199566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32209566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3221feb78a15SHong Zhang 
32229c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32239566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32249566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3225ddfdf956SHong Zhang 
32269566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
322707250d77SHong Zhang 
32289566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32299566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
323064efcef9SHong Zhang 
32319c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3232ddfdf956SHong Zhang   /* off-process column indices */
32339c988bcaSHong Zhang   count = 0;
32349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3236feb78a15SHong Zhang 
32379566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32389566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32398b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3240f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32419c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32421c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32431c645242SHong Zhang       count++;
32448b3fa1f7SHong Zhang     }
32458b3fa1f7SHong Zhang   }
32469566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32479566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
324807250d77SHong Zhang 
32499566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3250b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3251b6d9b4e0SHong Zhang 
32529566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32539c988bcaSHong Zhang   *garray = cmap1;
32549c988bcaSHong Zhang 
32559566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32569566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32579566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3259040216a4SHong Zhang }
3260040216a4SHong Zhang 
3261b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3262d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3263d71ae5a4SJacob Faibussowitsch {
3264b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32651fd43edeSHong Zhang   Mat         M = NULL;
32663b00a383SHong Zhang   MPI_Comm    comm;
3267b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32683b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3269b20e2604SHong Zhang   PetscInt    n;
32703b00a383SHong Zhang 
32713b00a383SHong Zhang   PetscFunctionBegin;
32729566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32733b00a383SHong Zhang 
32743b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3275b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32769566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
327728b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32783b00a383SHong Zhang 
32799566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
328028b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32813b00a383SHong Zhang 
32829566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
328328b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32843b00a383SHong Zhang 
3285b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3286b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32879566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32889566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
328948a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32909566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32919566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32923b00a383SHong Zhang 
32933b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
32949c988bcaSHong Zhang     const PetscInt *garray;
3295b20e2604SHong Zhang     PetscInt        BsubN;
32963b00a383SHong Zhang 
3297b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32989566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32993b00a383SHong Zhang 
3300b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
33019566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
33029566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
33033b00a383SHong Zhang 
33049c988bcaSHong Zhang     /* Create submatrix M */
33059566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M));
33063b00a383SHong Zhang 
3307b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3308b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33097cfce09cSHong Zhang 
33109566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3311b20e2604SHong Zhang     n = asub->B->cmap->N;
3312b20e2604SHong Zhang     if (BsubN > n) {
3313c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33147cfce09cSHong Zhang       const PetscInt *idx;
33159c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33169566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33177cfce09cSHong Zhang 
33189566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33197cfce09cSHong Zhang       j = 0;
33209566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3321b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33227cfce09cSHong Zhang         if (j >= BsubN) break;
33239c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33247cfce09cSHong Zhang 
33259c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33267cfce09cSHong Zhang           idx_new[i] = idx[j++];
332798921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33287cfce09cSHong Zhang       }
33299566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33307cfce09cSHong Zhang 
33319566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33329566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33337cfce09cSHong Zhang 
3334b20e2604SHong Zhang     } else if (BsubN < n) {
333598921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3336b20e2604SHong Zhang     }
33377cfce09cSHong Zhang 
33389566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3339b20e2604SHong Zhang     *submat = M;
33403b00a383SHong Zhang 
3341e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33429566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33439566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33443b00a383SHong Zhang 
33459566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33469566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33473b00a383SHong Zhang 
33489566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33499566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33503b00a383SHong Zhang   }
33513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33523b00a383SHong Zhang }
33533b00a383SHong Zhang 
3354d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3355d71ae5a4SJacob Faibussowitsch {
33561358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33573782ecc7SHong Zhang   PetscInt  csize;
335818e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33594a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33603782ecc7SHong Zhang   MPI_Comm  comm;
33613782ecc7SHong Zhang 
33623782ecc7SHong Zhang   PetscFunctionBegin;
3363bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3364a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33658f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33669566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3367d5761cdaSHong Zhang     if (isrow_d) {
3368d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3369d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3370d5761cdaSHong Zhang     } else {
33719566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3372d5761cdaSHong Zhang       if (iscol_local) {
3373d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3374d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3375d5761cdaSHong Zhang       }
3376d5761cdaSHong Zhang     }
33778f69fa7bSHong Zhang   } else {
3378e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
337918e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33809566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33813782ecc7SHong Zhang     if (!n) {
338218e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33833782ecc7SHong Zhang     } else {
33849566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33859566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3386ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33878f69fa7bSHong Zhang     }
33883782ecc7SHong Zhang 
3389e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
339018e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33919566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
339218e627e3SHong Zhang     if (!n) {
339318e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
339418e627e3SHong Zhang     } else {
33959566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
33969566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
339718e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
339818e627e3SHong Zhang     }
339918e627e3SHong Zhang 
34009566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3401462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
340218e627e3SHong Zhang     sameRowDist = tsameDist[0];
340318e627e3SHong Zhang   }
340418e627e3SHong Zhang 
340518e627e3SHong Zhang   if (sameRowDist) {
3406b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
34073b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
34089566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34093ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3410b20e2604SHong Zhang     } else { /* sameRowDist */
34113b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34121358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34131358a193SHong Zhang         PetscBool sorted;
34149566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34159566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34169566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
341708401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34181358a193SHong Zhang 
34199566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34201358a193SHong Zhang         if (sorted) {
34211358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34229566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34233ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34243782ecc7SHong Zhang         }
34251358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
342648c0d076SHong Zhang         IS iscol_sub;
34279566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
342848c0d076SHong Zhang         if (iscol_sub) {
34299566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34303ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
343148c0d076SHong Zhang         }
34321358a193SHong Zhang       }
34331358a193SHong Zhang     }
34341358a193SHong Zhang   }
34353782ecc7SHong Zhang 
3436bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34373782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34389566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
343928b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34403782ecc7SHong Zhang   } else {
344148a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34421358a193SHong Zhang   }
34433782ecc7SHong Zhang 
34449566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34459566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34468f69fa7bSHong Zhang 
3447b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34489566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34499566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3450b79d0421SJed Brown   }
34513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34524aa3045dSJed Brown }
34534aa3045dSJed Brown 
3454feb78a15SHong Zhang /*@C
345511a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3456feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3457feb78a15SHong Zhang 
3458d083f849SBarry Smith   Collective
3459feb78a15SHong Zhang 
3460feb78a15SHong Zhang   Input Parameters:
3461feb78a15SHong Zhang + comm   - MPI communicator
3462feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3463b20e2604SHong Zhang . B      - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine
34642ef1f0ffSBarry Smith - garray - global index of `B` columns
3465feb78a15SHong Zhang 
3466feb78a15SHong Zhang   Output Parameter:
34672ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
346827430b45SBarry Smith 
3469feb78a15SHong Zhang   Level: advanced
3470feb78a15SHong Zhang 
3471feb78a15SHong Zhang   Notes:
347211a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
347311a5261eSBarry Smith 
34742ef1f0ffSBarry Smith   `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore.
3475feb78a15SHong Zhang 
34761cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3477feb78a15SHong Zhang @*/
3478d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat)
3479d71ae5a4SJacob Faibussowitsch {
3480feb78a15SHong Zhang   Mat_MPIAIJ        *maij;
3481e489de8fSHong Zhang   Mat_SeqAIJ        *b  = (Mat_SeqAIJ *)B->data, *bnew;
3482a5348796SHong Zhang   PetscInt          *oi = b->i, *oj = b->j, i, nz, col;
3483ce496241SStefano Zampini   const PetscScalar *oa;
3484e489de8fSHong Zhang   Mat                Bnew;
3485feb78a15SHong Zhang   PetscInt           m, n, N;
34864ab4d6f4SRichard Tran Mills   MatType            mpi_mat_type;
3487feb78a15SHong Zhang 
3488feb78a15SHong Zhang   PetscFunctionBegin;
34899566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
34909566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
349108401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
349237a5e0faSPierre Jolivet   PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3493b6d9b4e0SHong Zhang   /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */
349408401ef6SPierre Jolivet   /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */
3495feb78a15SHong Zhang 
3496e489de8fSHong Zhang   /* Get global columns of mat */
3497462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm));
3498feb78a15SHong Zhang 
34999566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N));
35004ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
35014ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
35024ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
35034ab4d6f4SRichard Tran Mills 
350437a5e0faSPierre Jolivet   if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3505feb78a15SHong Zhang   maij = (Mat_MPIAIJ *)(*mat)->data;
3506feb78a15SHong Zhang 
3507feb78a15SHong Zhang   (*mat)->preallocated = PETSC_TRUE;
3508feb78a15SHong Zhang 
35099566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
35109566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3511feb78a15SHong Zhang 
3512e489de8fSHong Zhang   /* Set A as diagonal portion of *mat */
3513feb78a15SHong Zhang   maij->A = A;
3514feb78a15SHong Zhang 
3515a5348796SHong Zhang   nz = oi[m];
3516a5348796SHong Zhang   for (i = 0; i < nz; i++) {
3517a5348796SHong Zhang     col   = oj[i];
3518a5348796SHong Zhang     oj[i] = garray[col];
3519feb78a15SHong Zhang   }
3520feb78a15SHong Zhang 
3521e489de8fSHong Zhang   /* Set Bnew as off-diagonal portion of *mat */
35229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &oa));
35239566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew));
35249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &oa));
3525e489de8fSHong Zhang   bnew        = (Mat_SeqAIJ *)Bnew->data;
3526e489de8fSHong Zhang   bnew->maxnz = b->maxnz; /* allocated nonzeros of B */
3527e489de8fSHong Zhang   maij->B     = Bnew;
3528d5761cdaSHong Zhang 
352908401ef6SPierre Jolivet   PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N);
3530d5761cdaSHong Zhang 
3531d5761cdaSHong Zhang   b->free_a  = PETSC_FALSE;
3532d5761cdaSHong Zhang   b->free_ij = PETSC_FALSE;
35339566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&B));
3534d5761cdaSHong Zhang 
3535e489de8fSHong Zhang   bnew->free_a  = PETSC_TRUE;
3536e489de8fSHong Zhang   bnew->free_ij = PETSC_TRUE;
3537feb78a15SHong Zhang 
3538a5348796SHong Zhang   /* condense columns of maij->B */
35399566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
35409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
35419566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
35429566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
35439566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3545feb78a15SHong Zhang }
3546feb78a15SHong Zhang 
3547ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35484aa3045dSJed Brown 
3549d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3550d71ae5a4SJacob Faibussowitsch {
355198b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
355285f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
355398b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35541fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
355598b658c4SHong Zhang   MatScalar      *aa;
355600e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3557a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
355898b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
355998b658c4SHong Zhang   IS              iscol_sub, iscmap;
356098b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
356118e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3562a31a438cSHong Zhang   MPI_Comm        comm;
35637e2c5f70SBarry Smith 
3564a0ff6018SBarry Smith   PetscFunctionBegin;
35659566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3566d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35679566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
356828b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35699566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3570d5761cdaSHong Zhang 
35719566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
357228b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3573d5761cdaSHong Zhang 
35749566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
357528b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3576d5761cdaSHong Zhang 
35779566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3578d5761cdaSHong Zhang 
3579d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35803b00a383SHong Zhang     PetscBool flg;
35813b00a383SHong Zhang 
35829566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35839566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3584bcae8d28SHong Zhang 
35853b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3586366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35879566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3588366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3589462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3590366a327dSHong Zhang     if (allcolumns) {
3591366a327dSHong Zhang       iscol_sub = iscol_local;
35929566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35939566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3594366a327dSHong Zhang 
35953b00a383SHong Zhang     } else {
35961358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3597244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35989566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35999566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
36009566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
36018d2139bdSHong Zhang       count = 0;
3602a31a438cSHong Zhang       k     = 0;
3603a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3604a31a438cSHong Zhang         j = is_idx[i];
3605a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3606a31a438cSHong Zhang           /* diagonal part of mat */
36078d2139bdSHong Zhang           idx[count]     = j;
3608366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36094a3daf6eSHong Zhang         } else if (Bn) {
3610a31a438cSHong Zhang           /* off-diagonal part of mat */
3611a31a438cSHong Zhang           if (j == garray[k]) {
36128d2139bdSHong Zhang             idx[count]     = j;
3613a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3614a31a438cSHong Zhang           } else if (j > garray[k]) {
3615a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3616a31a438cSHong Zhang             if (j == garray[k]) {
3617a31a438cSHong Zhang               idx[count]     = j;
3618a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36198d2139bdSHong Zhang             }
36208d2139bdSHong Zhang           }
36218d2139bdSHong Zhang         }
36228d2139bdSHong Zhang       }
36239566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36248d2139bdSHong Zhang 
36259566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36269566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36279566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3628b6d9b4e0SHong Zhang 
36299566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3630a31a438cSHong Zhang     }
36318b3fa1f7SHong Zhang 
36323b00a383SHong Zhang     /* (3) Create sequential Msub */
36339566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3634d5761cdaSHong Zhang   }
36358d2139bdSHong Zhang 
36369566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
363757508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Msub->data;
363898b658c4SHong Zhang   ii  = aij->i;
36399566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3640a0ff6018SBarry Smith 
3641a0ff6018SBarry Smith   /*
3642a0ff6018SBarry Smith       m - number of local rows
3643a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3644a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3645a0ff6018SBarry Smith   */
36469566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
364798b658c4SHong Zhang 
36483b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36493b00a383SHong Zhang     /* (4) Create parallel newmat */
365098b658c4SHong Zhang     PetscMPIInt rank, size;
3651bcae8d28SHong Zhang     PetscInt    csize;
365298b658c4SHong Zhang 
36539566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36549566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
365500e6dbe6SBarry Smith 
3656a0ff6018SBarry Smith     /*
365700e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
365800e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3659a0ff6018SBarry Smith     */
366000e6dbe6SBarry Smith 
366100e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36629566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36636a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36649566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3665a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3666e2c4fddaSBarry Smith         nlocal = m;
36676a6a5d1dSBarry Smith       } else {
3668a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3669ab50ec6bSBarry Smith       }
3670ab50ec6bSBarry Smith     } else {
36716a6a5d1dSBarry Smith       nlocal = csize;
36726a6a5d1dSBarry Smith     }
36739566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
367400e6dbe6SBarry Smith     rstart = rend - nlocal;
3675aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
367600e6dbe6SBarry Smith 
367700e6dbe6SBarry Smith     /* next, compute all the lengths */
367898b658c4SHong Zhang     jj = aij->j;
36799566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
368000e6dbe6SBarry Smith     olens = dlens + m;
368100e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
368200e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
368300e6dbe6SBarry Smith       olen = 0;
368400e6dbe6SBarry Smith       dlen = 0;
368500e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
368615b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
368700e6dbe6SBarry Smith         else dlen++;
368800e6dbe6SBarry Smith         jj++;
368900e6dbe6SBarry Smith       }
369000e6dbe6SBarry Smith       olens[i] = olen;
369100e6dbe6SBarry Smith       dlens[i] = dlen;
369200e6dbe6SBarry Smith     }
3693b6d9b4e0SHong Zhang 
36949566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36959566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
369698b658c4SHong Zhang 
36979566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36989566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36999566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
37009566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
37019566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
37029566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3703d5761cdaSHong Zhang 
3704d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3705a0ff6018SBarry Smith     M = *newmat;
37069566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
370708401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37089566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3709c48de900SBarry Smith     /*
3710c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3711c48de900SBarry Smith        rather than the slower MatSetValues().
3712c48de900SBarry Smith     */
3713c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3714c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3715a0ff6018SBarry Smith   }
3716548ecf4dSHong Zhang 
37173b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37199566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
372098b658c4SHong Zhang 
372198b658c4SHong Zhang   jj = aij->j;
37229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3723a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3724a0ff6018SBarry Smith     row = rstart + i;
372500e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
372615b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37279566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37289371c9d4SSatish Balay     jj += nz;
37299371c9d4SSatish Balay     aa += nz;
3730a0ff6018SBarry Smith   }
37319566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37329566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3733a0ff6018SBarry Smith 
37349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3736fee21e36SBarry Smith 
37379566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
373898b658c4SHong Zhang 
373998b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3740fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37413b00a383SHong Zhang     *newmat = M;
3742f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37439566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
374498b658c4SHong Zhang 
3745f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37469566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
374798b658c4SHong Zhang 
3748f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37499566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3750bcae8d28SHong Zhang 
3751bcae8d28SHong Zhang     if (iscol_local) {
3752f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37539566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3754bcae8d28SHong Zhang     }
375598b658c4SHong Zhang   }
37563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3757a0ff6018SBarry Smith }
3758273d9f13SBarry Smith 
3759df40acb1SHong Zhang /*
3760df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3761df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3762df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3763df40acb1SHong Zhang 
376411a5261eSBarry Smith   This requires a sequential iscol with all indices.
3765df40acb1SHong Zhang */
3766d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3767d71ae5a4SJacob Faibussowitsch {
3768df40acb1SHong Zhang   PetscMPIInt rank, size;
3769df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3770df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3771df40acb1SHong Zhang   Mat         M, Mreuse;
377298b658c4SHong Zhang   MatScalar  *aa, *vwork;
3773df40acb1SHong Zhang   MPI_Comm    comm;
3774df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37750b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3776df40acb1SHong Zhang 
3777df40acb1SHong Zhang   PetscFunctionBegin;
37789566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37799566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37809566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3781df40acb1SHong Zhang 
37820b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37839566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37849566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37850b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3786462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37870b27a90eSHong Zhang 
3788df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37899566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
379028b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37919566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3792df40acb1SHong Zhang   } else {
37939566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3794df40acb1SHong Zhang   }
3795df40acb1SHong Zhang 
3796df40acb1SHong Zhang   /*
3797df40acb1SHong Zhang       m - number of local rows
3798df40acb1SHong Zhang       n - number of columns (same on all processors)
3799df40acb1SHong Zhang       rstart - first row in new global matrix generated
3800df40acb1SHong Zhang   */
38019566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
38029566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3803df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
380457508eceSPierre Jolivet     aij = (Mat_SeqAIJ *)Mreuse->data;
3805df40acb1SHong Zhang     ii  = aij->i;
3806df40acb1SHong Zhang     jj  = aij->j;
3807df40acb1SHong Zhang 
3808df40acb1SHong Zhang     /*
3809df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3810df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3811df40acb1SHong Zhang     */
3812df40acb1SHong Zhang 
3813df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3814df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38159566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3816df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3817df40acb1SHong Zhang         nlocal = m;
3818df40acb1SHong Zhang       } else {
3819df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3820df40acb1SHong Zhang       }
3821df40acb1SHong Zhang     } else {
3822df40acb1SHong Zhang       nlocal = csize;
3823df40acb1SHong Zhang     }
38249566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3825df40acb1SHong Zhang     rstart = rend - nlocal;
3826aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3827df40acb1SHong Zhang 
3828df40acb1SHong Zhang     /* next, compute all the lengths */
38299566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3830df40acb1SHong Zhang     olens = dlens + m;
3831df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3832df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3833df40acb1SHong Zhang       olen = 0;
3834df40acb1SHong Zhang       dlen = 0;
3835df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3836df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3837df40acb1SHong Zhang         else dlen++;
3838df40acb1SHong Zhang         jj++;
3839df40acb1SHong Zhang       }
3840df40acb1SHong Zhang       olens[i] = olen;
3841df40acb1SHong Zhang       dlens[i] = dlen;
3842df40acb1SHong Zhang     }
38439566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38449566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38459566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38469566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38479566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38489566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3849df40acb1SHong Zhang   } else {
3850df40acb1SHong Zhang     PetscInt ml, nl;
3851df40acb1SHong Zhang 
3852df40acb1SHong Zhang     M = *newmat;
38539566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
385408401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38559566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3856df40acb1SHong Zhang     /*
3857df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3858df40acb1SHong Zhang        rather than the slower MatSetValues().
3859df40acb1SHong Zhang     */
3860df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3861df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3862df40acb1SHong Zhang   }
38639566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
386457508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Mreuse->data;
3865df40acb1SHong Zhang   ii  = aij->i;
3866df40acb1SHong Zhang   jj  = aij->j;
38672e5835c6SStefano Zampini 
38682e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38699566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3870df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3871df40acb1SHong Zhang     row   = rstart + i;
3872df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38739371c9d4SSatish Balay     cwork = jj;
38748e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38759371c9d4SSatish Balay     vwork = aa;
38768e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38779566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3878df40acb1SHong Zhang   }
38799566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3880df40acb1SHong Zhang 
38819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3883df40acb1SHong Zhang   *newmat = M;
3884df40acb1SHong Zhang 
3885df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3886df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38879566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38889566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3889df40acb1SHong Zhang   }
38903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3891df40acb1SHong Zhang }
3892df40acb1SHong Zhang 
3893ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3894d71ae5a4SJacob Faibussowitsch {
38956a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
38969f0612e4SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart;
3897ccd8e176SBarry Smith   const PetscInt *JJ;
3898eeb24464SBarry Smith   PetscBool       nooffprocentries;
38996a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3900ccd8e176SBarry Smith 
3901ccd8e176SBarry Smith   PetscFunctionBegin;
39029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
39039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3904d0f46423SBarry Smith   m       = B->rmap->n;
3905d0f46423SBarry Smith   cstart  = B->cmap->rstart;
3906d0f46423SBarry Smith   cend    = B->cmap->rend;
3907d0f46423SBarry Smith   rstart  = B->rmap->rstart;
39089f0612e4SBarry Smith   irstart = Ii[0];
3909899cda47SBarry Smith 
39109566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3911ccd8e176SBarry Smith 
391276bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39138f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3914ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39159f0612e4SBarry Smith       JJ  = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
391608401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
391708401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
391808401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3919ecc77c7aSBarry Smith     }
392076bd3646SJed Brown   }
3921ecc77c7aSBarry Smith 
39228f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3923b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39249f0612e4SBarry Smith     JJ      = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
3925ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3926ccd8e176SBarry Smith     d       = 0;
39270daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39280daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3929ccd8e176SBarry Smith     }
3930ccd8e176SBarry Smith     d_nnz[i] = d;
3931ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3932ccd8e176SBarry Smith   }
39339566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39349566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3935ccd8e176SBarry Smith 
39368f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3937ccd8e176SBarry Smith     ii = i + rstart;
39389f0612e4SBarry Smith     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES));
3939ccd8e176SBarry Smith   }
3940eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3941eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3944eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3945ccd8e176SBarry Smith 
39466a3d2595SBarry Smith   /* count number of entries below block diagonal */
39476a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39486a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39496a3d2595SBarry Smith   Aij->ld = ld;
39506a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39516a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39526a3d2595SBarry Smith     j   = 0;
3953ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39546a3d2595SBarry Smith     ld[i] = j;
3955720a2405SPierre Jolivet     if (J) J += nnz;
39566a3d2595SBarry Smith   }
39576a3d2595SBarry Smith 
39589566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3960ccd8e176SBarry Smith }
3961ccd8e176SBarry Smith 
39621eea217eSSatish Balay /*@
396311a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3964ccd8e176SBarry Smith   (the default parallel PETSc format).
3965ccd8e176SBarry Smith 
3966d083f849SBarry Smith   Collective
3967ccd8e176SBarry Smith 
3968ccd8e176SBarry Smith   Input Parameters:
3969a1661176SMatthew Knepley + B - the matrix
3970d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3971d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3972ccd8e176SBarry Smith - v - optional values in the matrix
3973ccd8e176SBarry Smith 
3974ccd8e176SBarry Smith   Level: developer
3975ccd8e176SBarry Smith 
397612251496SSatish Balay   Notes:
39772ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39782ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
397911a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
398012251496SSatish Balay 
39812ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
398212251496SSatish Balay 
3983a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3984a4bd8bc0SBarry Smith 
3985a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3986a4bd8bc0SBarry Smith 
3987a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3988a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3989a4bd8bc0SBarry Smith 
399012251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
399112251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3992c5e4d11fSDmitry Karpeev   as shown
399327430b45SBarry Smith .vb
399427430b45SBarry Smith         1 0 0
399527430b45SBarry Smith         2 0 3     P0
399627430b45SBarry Smith        -------
399727430b45SBarry Smith         4 5 6     P1
399827430b45SBarry Smith 
399927430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
400027430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
400127430b45SBarry Smith         j =  {0,0,2}  [size = 3]
400227430b45SBarry Smith         v =  {1,2,3}  [size = 3]
400327430b45SBarry Smith 
400427430b45SBarry Smith      Process1 [P1] rows_owned=[2]
400527430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
400627430b45SBarry Smith         j =  {0,1,2}  [size = 3]
400727430b45SBarry Smith         v =  {4,5,6}  [size = 3]
400827430b45SBarry Smith .ve
400912251496SSatish Balay 
4010fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4011a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4012ccd8e176SBarry Smith @*/
4013d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4014d71ae5a4SJacob Faibussowitsch {
4015ccd8e176SBarry Smith   PetscFunctionBegin;
4016cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4018ccd8e176SBarry Smith }
4019ccd8e176SBarry Smith 
40205d83a8b1SBarry Smith /*@
402111a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4022273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4023273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
402420f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4025273d9f13SBarry Smith 
4026d083f849SBarry Smith   Collective
4027273d9f13SBarry Smith 
4028273d9f13SBarry Smith   Input Parameters:
40291c4f3114SJed Brown + B     - the matrix
4030273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4031273d9f13SBarry Smith            (same value is used for all local rows)
4032273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4033273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40342ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4035273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40363287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40373287b5eaSJed Brown            the diagonal entry even if it is zero.
4038273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4039273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4040273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4041273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40422ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4043273d9f13SBarry Smith            structure. The size of this array is equal to the number
4044273d9f13SBarry Smith            of local rows, i.e 'm'.
4045273d9f13SBarry Smith 
40462920cce0SJacob Faibussowitsch   Example Usage:
404727430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
404827430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
404927430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
405027430b45SBarry Smith   as follows
405127430b45SBarry Smith 
405227430b45SBarry Smith .vb
405327430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
405427430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
405527430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
405627430b45SBarry Smith     -------------------------------------
405727430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
405827430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
405927430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
406027430b45SBarry Smith     -------------------------------------
406127430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
406227430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
406327430b45SBarry Smith .ve
406427430b45SBarry Smith 
406527430b45SBarry Smith   This can be represented as a collection of submatrices as
406627430b45SBarry Smith .vb
406727430b45SBarry Smith       A B C
406827430b45SBarry Smith       D E F
406927430b45SBarry Smith       G H I
407027430b45SBarry Smith .ve
407127430b45SBarry Smith 
407227430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
407327430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
407427430b45SBarry Smith 
407527430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407627430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407727430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
407827430b45SBarry Smith 
407927430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
408027430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
408127430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
408227430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
408327430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
40845163b989SNuno Nobre   matrix, and [DF] as another `MATSEQAIJ` matrix.
408527430b45SBarry Smith 
408620f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
40875163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
40885163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
40895163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
40905163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
409120f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
409227430b45SBarry Smith .vb
409327430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
409427430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
409527430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
409627430b45SBarry Smith .ve
409720f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
409827430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
409927430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
410027430b45SBarry Smith   34 values.
410127430b45SBarry Smith 
410220f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
410327430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
410420f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
410527430b45SBarry Smith .vb
410627430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
410727430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
410827430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
410927430b45SBarry Smith .ve
411027430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
411127430b45SBarry Smith   hence pre-allocation is perfect.
411227430b45SBarry Smith 
411327430b45SBarry Smith   Level: intermediate
411427430b45SBarry Smith 
411527430b45SBarry Smith   Notes:
411649a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
411749a6f317SBarry Smith 
411827430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41190598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4120651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4121273d9f13SBarry Smith 
4122273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4123273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4124273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4125273d9f13SBarry Smith 
4126273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4127a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4128a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4129a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4130a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4131a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4132a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4133a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4134a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4135273d9f13SBarry Smith 
41362ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4137273d9f13SBarry Smith 
413827430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4139aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
414027430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4141aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4142aa95bbe8SBarry Smith 
41431cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4144a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4145273d9f13SBarry Smith @*/
4146d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4147d71ae5a4SJacob Faibussowitsch {
4148273d9f13SBarry Smith   PetscFunctionBegin;
41496ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41506ba663aaSJed Brown   PetscValidType(B, 1);
4151cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4153273d9f13SBarry Smith }
4154273d9f13SBarry Smith 
415558d36128SBarry Smith /*@
415611a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41578f8f2f0dSBarry Smith   CSR format for the local rows.
41582fb0ec9aSBarry Smith 
4159d083f849SBarry Smith   Collective
41602fb0ec9aSBarry Smith 
41612fb0ec9aSBarry Smith   Input Parameters:
41622fb0ec9aSBarry Smith + comm - MPI communicator
416311a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41642fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4165d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4166d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4167d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4168d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41695693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41705693b835SJunchao Zhang . j    - global column indices
4171f1f2ae84SBarry Smith - a    - optional matrix values
41722fb0ec9aSBarry Smith 
41732fb0ec9aSBarry Smith   Output Parameter:
41742fb0ec9aSBarry Smith . mat - the matrix
417503bfb495SBarry Smith 
41762fb0ec9aSBarry Smith   Level: intermediate
41772fb0ec9aSBarry Smith 
41782fb0ec9aSBarry Smith   Notes:
41792ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4180d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4181d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41822fb0ec9aSBarry Smith 
41832ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
418412251496SSatish Balay 
41855693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4186a4bd8bc0SBarry Smith 
41875693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4188a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4189a4bd8bc0SBarry Smith 
419012251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4191d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4192c5e4d11fSDmitry Karpeev   as shown
41932ef1f0ffSBarry Smith .vb
41942ef1f0ffSBarry Smith         1 0 0
41952ef1f0ffSBarry Smith         2 0 3     P0
41962ef1f0ffSBarry Smith        -------
41972ef1f0ffSBarry Smith         4 5 6     P1
41988f8f2f0dSBarry Smith 
41992ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
42002ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
42012ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
42022ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
42032fb0ec9aSBarry Smith 
42042ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
42052ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
42062ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
42072ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42082ef1f0ffSBarry Smith .ve
42092ef1f0ffSBarry Smith 
4210d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42115693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42122fb0ec9aSBarry Smith @*/
4213d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4214d71ae5a4SJacob Faibussowitsch {
42152fb0ec9aSBarry Smith   PetscFunctionBegin;
421608401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
421708401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42189566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42199566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42209566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42219566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42229566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42242fb0ec9aSBarry Smith }
42252fb0ec9aSBarry Smith 
42268f8f2f0dSBarry Smith /*@
422711a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42282ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42292ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42306a3d2595SBarry Smith 
42316a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42328f8f2f0dSBarry Smith 
42338f8f2f0dSBarry Smith   Collective
42348f8f2f0dSBarry Smith 
42358f8f2f0dSBarry Smith   Input Parameters:
42368f8f2f0dSBarry Smith + mat - the matrix
423711a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42388f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
423911a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42408f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
424111a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
424211a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42438f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42448f8f2f0dSBarry Smith . J   - column indices
42458f8f2f0dSBarry Smith - v   - matrix values
42468f8f2f0dSBarry Smith 
42472ef1f0ffSBarry Smith   Level: deprecated
42488f8f2f0dSBarry Smith 
42491cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4250a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42518f8f2f0dSBarry Smith @*/
4252d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4253d71ae5a4SJacob Faibussowitsch {
42546a3d2595SBarry Smith   PetscInt        nnz, i;
42558f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42568f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4257fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4258fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42598f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42606a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42616a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42628f8f2f0dSBarry Smith 
42638f8f2f0dSBarry Smith   PetscFunctionBegin;
4264aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
426508401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
426608401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
426708401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42688f8f2f0dSBarry Smith 
42699566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42709566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42718f8f2f0dSBarry Smith 
42728f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42734c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42744c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42754c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42764c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42774c17f1ccSBarry Smith       }
42784c17f1ccSBarry Smith     }
42798f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42808f8f2f0dSBarry Smith     Iii = Ii[i];
42818f8f2f0dSBarry Smith     ldi = ld[i];
42828f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42839566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42849566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42859566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42868f8f2f0dSBarry Smith     ad += md;
42878f8f2f0dSBarry Smith     ao += nnz - md;
42888f8f2f0dSBarry Smith   }
42898f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42908f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42939566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42949566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42959566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42969566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42979566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42988f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43008f8f2f0dSBarry Smith }
43018f8f2f0dSBarry Smith 
43026a3d2595SBarry Smith /*@
430311a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
43046a3d2595SBarry Smith 
43056a3d2595SBarry Smith   Collective
43066a3d2595SBarry Smith 
43076a3d2595SBarry Smith   Input Parameters:
43086a3d2595SBarry Smith + mat - the matrix
43096a3d2595SBarry Smith - v   - matrix values, stored by row
43106a3d2595SBarry Smith 
43116a3d2595SBarry Smith   Level: intermediate
43126a3d2595SBarry Smith 
4313a4bd8bc0SBarry Smith   Notes:
43146a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43156a3d2595SBarry Smith 
4316a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4317a4bd8bc0SBarry Smith 
43181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4319a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43206a3d2595SBarry Smith @*/
4321d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4322d71ae5a4SJacob Faibussowitsch {
43236a3d2595SBarry Smith   PetscInt        nnz, i, m;
43246a3d2595SBarry Smith   PetscBool       nooffprocentries;
43256a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43266a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43276a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43286a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43296a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43306a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43316a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43326a3d2595SBarry Smith 
43336a3d2595SBarry Smith   PetscFunctionBegin;
43346a3d2595SBarry Smith   m = mat->rmap->n;
43356a3d2595SBarry Smith 
43366a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43376a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43386a3d2595SBarry Smith   Iii = 0;
43396a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43406a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43416a3d2595SBarry Smith     ldi = ld[i];
43426a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43436a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43446a3d2595SBarry Smith     ad += md;
4345810441c8SPierre Jolivet     if (ao) {
4346810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4347810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43486a3d2595SBarry Smith       ao += nnz - md;
4349810441c8SPierre Jolivet     }
43506a3d2595SBarry Smith     Iii += nnz;
43516a3d2595SBarry Smith   }
43526a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43536a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43546a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43556a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43566a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43576a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43586a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43596a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43606a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43616a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43636a3d2595SBarry Smith }
43646a3d2595SBarry Smith 
43655d83a8b1SBarry Smith /*@
436611a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4367273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4368273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43692ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4370273d9f13SBarry Smith 
4371d083f849SBarry Smith   Collective
4372273d9f13SBarry Smith 
4373273d9f13SBarry Smith   Input Parameters:
4374273d9f13SBarry Smith + comm  - MPI communicator
437511a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4376273d9f13SBarry Smith           This value should be the same as the local size used in creating the
4377273d9f13SBarry Smith           y vector for the matrix-vector product y = Ax.
4378273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
437945f401ebSJose E. Roman           x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4380273d9f13SBarry Smith           calculated if N is given) For square matrices n is almost always m.
438111a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
438211a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4383273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4384273d9f13SBarry Smith           (same value is used for all local rows)
4385273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4386273d9f13SBarry Smith           DIAGONAL portion of the local submatrix (possibly different for each row)
43872ef1f0ffSBarry Smith           or `NULL`, if `d_nz` is used to specify the nonzero structure.
4388273d9f13SBarry Smith           The size of this array is equal to the number of local rows, i.e 'm'.
4389273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4390273d9f13SBarry Smith           submatrix (same value is used for all local rows).
4391273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4392273d9f13SBarry Smith           OFF-DIAGONAL portion of the local submatrix (possibly different for
43932ef1f0ffSBarry Smith           each row) or `NULL`, if `o_nz` is used to specify the nonzero
4394273d9f13SBarry Smith           structure. The size of this array is equal to the number
4395273d9f13SBarry Smith           of local rows, i.e 'm'.
4396273d9f13SBarry Smith 
4397273d9f13SBarry Smith   Output Parameter:
4398273d9f13SBarry Smith . A - the matrix
4399273d9f13SBarry Smith 
440027430b45SBarry Smith   Options Database Keys:
440127430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
440227430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
440327430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
4404727bdf9bSBarry Smith                                       See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter`
4405727bdf9bSBarry Smith                                       to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
440627430b45SBarry Smith 
44072ef1f0ffSBarry Smith   Level: intermediate
44082ef1f0ffSBarry Smith 
440927430b45SBarry Smith   Notes:
441077433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4411f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
441211a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4413175b88e8SBarry Smith 
441449a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
441549a6f317SBarry Smith 
44162ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44172ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4418273d9f13SBarry Smith   storage requirements for this matrix.
4419273d9f13SBarry Smith 
442011a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4421273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4422273d9f13SBarry Smith   that argument.
4423273d9f13SBarry Smith 
4424727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
4425727bdf9bSBarry Smith   `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
4426727bdf9bSBarry Smith 
4427273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4428273d9f13SBarry Smith   (possibly both).
4429273d9f13SBarry Smith 
443033a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
4431727bdf9bSBarry Smith   first `m0` rows belong to process 0, the next `m1` rows belong to
4432727bdf9bSBarry Smith   process 1, the next `m2` rows belong to process 2, etc., where
4433727bdf9bSBarry Smith   `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores
443433a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4435273d9f13SBarry Smith 
443633a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
443733a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4438df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
443933a7c187SSatish Balay 
444033a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
444133a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
444233a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
444333a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
444433a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
444533a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
4446*0b4b7b1cSBarry Smith   illustrates this concept. The two matrices, the DIAGONAL portion and
4447*0b4b7b1cSBarry Smith   the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices.
444833a7c187SSatish Balay 
444933a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
445033a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
445133a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
445233a7c187SSatish Balay   local matrix (a rectangular submatrix).
4453273d9f13SBarry Smith 
44542ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4455273d9f13SBarry Smith 
445697d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44572ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4458da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4459da57b5cdSKarl Rupp .vb
44602ef1f0ffSBarry Smith   MatCreate(..., &A);
44612ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44622ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44632ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4464da57b5cdSKarl Rupp .ve
446597d05335SKris Buschelman 
4466273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4467273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4468273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4469273d9f13SBarry Smith 
44702920cce0SJacob Faibussowitsch   Example Usage:
4471273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4472273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4473273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4474efc377ccSKarl Rupp   as follows
4475273d9f13SBarry Smith 
4476273d9f13SBarry Smith .vb
4477273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4478273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4479273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4480273d9f13SBarry Smith     -------------------------------------
4481273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4482273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4483273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4484273d9f13SBarry Smith     -------------------------------------
4485273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4486273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4487273d9f13SBarry Smith .ve
4488273d9f13SBarry Smith 
4489da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4490273d9f13SBarry Smith 
4491273d9f13SBarry Smith .vb
4492273d9f13SBarry Smith       A B C
4493273d9f13SBarry Smith       D E F
4494273d9f13SBarry Smith       G H I
4495273d9f13SBarry Smith .ve
4496273d9f13SBarry Smith 
4497273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4498273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4499273d9f13SBarry Smith 
4500273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4501273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4502273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4503273d9f13SBarry Smith 
4504273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4505273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4506273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4507273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
450827430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
45095163b989SNuno Nobre   matrix, and [DF] as another SeqAIJ matrix.
4510273d9f13SBarry Smith 
45112ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45125163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
45135163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
45145163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
45155163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45162ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4517273d9f13SBarry Smith .vb
451827430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
451927430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
452027430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4521273d9f13SBarry Smith .ve
45222ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4523273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4524273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4525273d9f13SBarry Smith   34 values.
4526273d9f13SBarry Smith 
45272ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4528a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4529da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4530273d9f13SBarry Smith .vb
453127430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
453227430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
453327430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4534273d9f13SBarry Smith .ve
4535273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4536273d9f13SBarry Smith   hence pre-allocation is perfect.
4537273d9f13SBarry Smith 
45381cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4539727bdf9bSBarry Smith           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`,
4540727bdf9bSBarry Smith           `MatGetOwnershipRangesColumn()`, `PetscLayout`
4541273d9f13SBarry Smith @*/
4542d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4543d71ae5a4SJacob Faibussowitsch {
4544b1d57f15SBarry Smith   PetscMPIInt size;
4545273d9f13SBarry Smith 
4546273d9f13SBarry Smith   PetscFunctionBegin;
45479566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45489566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45499566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4550273d9f13SBarry Smith   if (size > 1) {
45519566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45529566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4553273d9f13SBarry Smith   } else {
45549566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45559566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4556273d9f13SBarry Smith   }
45573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4558273d9f13SBarry Smith }
4559195d93cdSBarry Smith 
45600b98dbb4SBarry Smith /*MC
45610b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix
45620b98dbb4SBarry Smith 
45630b98dbb4SBarry Smith     Synopsis:
45640b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45650b98dbb4SBarry Smith 
45660b98dbb4SBarry Smith     Not Collective
45670b98dbb4SBarry Smith 
45680b98dbb4SBarry Smith     Input Parameter:
45690b98dbb4SBarry Smith .   A - the `MATMPIAIJ` matrix
45700b98dbb4SBarry Smith 
45710b98dbb4SBarry Smith     Output Parameters:
45720b98dbb4SBarry Smith +   Ad - the diagonal portion of the matrix
45734cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45742ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45750b98dbb4SBarry Smith -   ierr - error code
45760b98dbb4SBarry Smith 
45770b98dbb4SBarry Smith      Level: advanced
45780b98dbb4SBarry Smith 
45790b98dbb4SBarry Smith     Note:
45800b98dbb4SBarry Smith     Use  `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45810b98dbb4SBarry Smith 
45821cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()`
45830b98dbb4SBarry Smith M*/
45840b98dbb4SBarry Smith 
45850b98dbb4SBarry Smith /*MC
45860b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45870b98dbb4SBarry Smith 
45880b98dbb4SBarry Smith     Synopsis:
45890b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45900b98dbb4SBarry Smith 
45910b98dbb4SBarry Smith     Not Collective
45920b98dbb4SBarry Smith 
45930b98dbb4SBarry Smith     Input Parameters:
45940b98dbb4SBarry Smith +   A - the `MATMPIAIJ` matrix
45950b98dbb4SBarry Smith .   Ad - the diagonal portion of the matrix
45964cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45972ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45980b98dbb4SBarry Smith -   ierr - error code
45990b98dbb4SBarry Smith 
46000b98dbb4SBarry Smith      Level: advanced
46010b98dbb4SBarry Smith 
46021cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()`
46030b98dbb4SBarry Smith M*/
46040b98dbb4SBarry Smith 
4605127ca0efSMatthew Knepley /*@C
46060ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4607127ca0efSMatthew Knepley 
46082ef1f0ffSBarry Smith   Not Collective
4609127ca0efSMatthew Knepley 
4610127ca0efSMatthew Knepley   Input Parameter:
461111a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4612127ca0efSMatthew Knepley 
4613127ca0efSMatthew Knepley   Output Parameters:
461411a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
461511a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
46162ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4617127ca0efSMatthew Knepley 
46180ab4885dSBarry Smith   Level: intermediate
46190ab4885dSBarry Smith 
462011a5261eSBarry Smith   Note:
46212ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
46222ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
46232ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4624127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4625127ca0efSMatthew Knepley 
4626fe59aa6dSJacob Faibussowitsch   Fortran Notes:
46270ab4885dSBarry Smith   `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()`
4628127ca0efSMatthew Knepley 
4629fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4630127ca0efSMatthew Knepley @*/
4631d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4632d71ae5a4SJacob Faibussowitsch {
4633195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
463404cf37c7SBarry Smith   PetscBool   flg;
4635b1d57f15SBarry Smith 
4636195d93cdSBarry Smith   PetscFunctionBegin;
46379566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
463828b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
463921e72a00SBarry Smith   if (Ad) *Ad = a->A;
464021e72a00SBarry Smith   if (Ao) *Ao = a->B;
464121e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4643195d93cdSBarry Smith }
4644a2243be0SBarry Smith 
4645d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4646d71ae5a4SJacob Faibussowitsch {
4647110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46489b8102ccSHong Zhang   PetscInt    *indx;
4649110bb6e1SHong Zhang   PetscScalar *values;
4650421ddf4dSJunchao Zhang   MatType      rootType;
46519b8102ccSHong Zhang 
46529b8102ccSHong Zhang   PetscFunctionBegin;
46539566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4654110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4655110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4656110bb6e1SHong Zhang 
465748a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4658a22543b6SHong Zhang     /* Check sum(n) = N */
4659462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
466008401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4661a22543b6SHong Zhang 
46629566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46639b8102ccSHong Zhang     rstart -= m;
46649b8102ccSHong Zhang 
4665d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46669b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46679566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46689566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46699566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46709b8102ccSHong Zhang     }
46719b8102ccSHong Zhang 
46729566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46739566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46749566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46759566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46769566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46779566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46789566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46799566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4680d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46819566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46829b8102ccSHong Zhang   }
46839b8102ccSHong Zhang 
4684110bb6e1SHong Zhang   /* numeric phase */
46859566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46869b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46879566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46889b8102ccSHong Zhang     Ii = i + rstart;
46899566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46909566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46919b8102ccSHong Zhang   }
46929566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46939566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4695c5d6d63eSBarry Smith }
4696c5d6d63eSBarry Smith 
4697d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data)
4698d71ae5a4SJacob Faibussowitsch {
46996718818eSStefano Zampini   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data;
470051a7d1a8SHong Zhang 
470151a7d1a8SHong Zhang   PetscFunctionBegin;
47023ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
47039566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
47049566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
47059566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
47069566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
47079566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
47089566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
47099566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
47109566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
47119566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
47129566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
47139566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
47149566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
47159566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
47169566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
47173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
471851a7d1a8SHong Zhang }
471951a7d1a8SHong Zhang 
4720c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4721c6db04a5SJed Brown #include <petscbt.h>
47224ebed01fSBarry Smith 
4723d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4724d71ae5a4SJacob Faibussowitsch {
4725ce94432eSBarry Smith   MPI_Comm             comm;
472655d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4727b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
47286497c311SBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m;
47296497c311SBarry Smith   PetscMPIInt          proc, k;
4730b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
47316497c311SBarry Smith   PetscInt             anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4732b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
473355d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
473455d1abb9SHong Zhang   MPI_Status          *status;
4735fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4736dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
473755d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4738776b82aeSLisandro Dalcin   PetscContainer       container;
473955d1abb9SHong Zhang 
474055d1abb9SHong Zhang   PetscFunctionBegin;
47419566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47429566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47433c2c1871SHong Zhang 
47449566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47459566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
474655d1abb9SHong Zhang 
47479566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
474828b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47499566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4751fff043a9SJunchao Zhang   aa = a_a;
4752bf0cc555SLisandro Dalcin 
475355d1abb9SHong Zhang   bi     = merge->bi;
475455d1abb9SHong Zhang   bj     = merge->bj;
475555d1abb9SHong Zhang   buf_ri = merge->buf_ri;
475655d1abb9SHong Zhang   buf_rj = merge->buf_rj;
475755d1abb9SHong Zhang 
47589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47597a2fc3feSBarry Smith   owners = merge->rowmap->range;
476055d1abb9SHong Zhang   len_s  = merge->len_s;
476155d1abb9SHong Zhang 
476255d1abb9SHong Zhang   /* send and recv matrix values */
47639566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47649566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
476555d1abb9SHong Zhang 
47669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
476755d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
476855d1abb9SHong Zhang     if (!len_s[proc]) continue;
476955d1abb9SHong Zhang     i = owners[proc];
47706497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
477155d1abb9SHong Zhang     k++;
477255d1abb9SHong Zhang   }
477355d1abb9SHong Zhang 
47749566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47759566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47769566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
477755d1abb9SHong Zhang 
47789566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47799566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
478055d1abb9SHong Zhang 
478155d1abb9SHong Zhang   /* insert mat values of mpimat */
47829566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
478455d1abb9SHong Zhang 
478555d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
478655d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4787f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
478855d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4789a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
479055d1abb9SHong Zhang   }
479155d1abb9SHong Zhang 
479255d1abb9SHong Zhang   /* set values of ba */
47937a2fc3feSBarry Smith   m = merge->rowmap->n;
479455d1abb9SHong Zhang   for (i = 0; i < m; i++) {
479555d1abb9SHong Zhang     arow = owners[rank] + i;
479655d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
479755d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47989566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
479955d1abb9SHong Zhang 
480055d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
480155d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
480255d1abb9SHong Zhang     aj     = a->j + ai[arow];
4803fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
480455d1abb9SHong Zhang     nextaj = 0;
480555d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
480655d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
480755d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
480855d1abb9SHong Zhang       }
480955d1abb9SHong Zhang     }
481055d1abb9SHong Zhang 
481155d1abb9SHong Zhang     /* add received vals into ba */
481255d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
481355d1abb9SHong Zhang       /* i-th row */
481455d1abb9SHong Zhang       if (i == *nextrow[k]) {
481555d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4816f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4817f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
481855d1abb9SHong Zhang         nextaj = 0;
481955d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
482055d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
482155d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
482255d1abb9SHong Zhang           }
482355d1abb9SHong Zhang         }
48249371c9d4SSatish Balay         nextrow[k]++;
48259371c9d4SSatish Balay         nextai[k]++;
482655d1abb9SHong Zhang       }
482755d1abb9SHong Zhang     }
48289566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
482955d1abb9SHong Zhang   }
48309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
48319566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
48329566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
483355d1abb9SHong Zhang 
48349566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
48359566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
48369566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
48379566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
48389566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
48393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
484055d1abb9SHong Zhang }
484138f152feSBarry Smith 
4842d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4843d71ae5a4SJacob Faibussowitsch {
484455a3bba9SHong Zhang   Mat                  B_mpi;
4845c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4846b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4847b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4848d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
48496497c311SBarry Smith   PetscInt             len, *dnz, *onz, bs, cbs;
4850c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4851b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
485255d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
485358cb9c82SHong Zhang   MPI_Status          *status;
48540298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4855be0fcf8dSHong Zhang   PetscBT              lnkbt;
485651a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4857776b82aeSLisandro Dalcin   PetscContainer       container;
485802c68681SHong Zhang 
4859e5f2cdd8SHong Zhang   PetscFunctionBegin;
48609566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48613c2c1871SHong Zhang 
486238f152feSBarry Smith   /* make sure it is a PETSc comm */
48639566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48649566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48659566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
486655d1abb9SHong Zhang 
48679566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48689566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4869e5f2cdd8SHong Zhang 
48706abd8857SHong Zhang   /* determine row ownership */
48719566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48739566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48749566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48759566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
487855d1abb9SHong Zhang 
48797a2fc3feSBarry Smith   m      = merge->rowmap->n;
48807a2fc3feSBarry Smith   owners = merge->rowmap->range;
48816abd8857SHong Zhang 
48826abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48833e06a4e6SHong Zhang   len_s = merge->len_s;
488451a7d1a8SHong Zhang 
48852257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4886c2234fe3SHong Zhang   merge->nsend = 0;
48876497c311SBarry Smith   for (PetscMPIInt proc = 0; proc < size; proc++) {
48882257cef7SHong Zhang     len_si[proc] = 0;
48893e06a4e6SHong Zhang     if (proc == rank) {
48906abd8857SHong Zhang       len_s[proc] = 0;
48913e06a4e6SHong Zhang     } else {
48926497c311SBarry Smith       PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc]));
48936497c311SBarry Smith       PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */
48943e06a4e6SHong Zhang     }
48953e06a4e6SHong Zhang     if (len_s[proc]) {
4896c2234fe3SHong Zhang       merge->nsend++;
48972257cef7SHong Zhang       nrows = 0;
48982257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48992257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
49002257cef7SHong Zhang       }
49016497c311SBarry Smith       PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc]));
49022257cef7SHong Zhang       len += len_si[proc];
4903409913e3SHong Zhang     }
490458cb9c82SHong Zhang   }
4905409913e3SHong Zhang 
49062257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
49079566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
49089566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4909671beff6SHong Zhang 
49103e06a4e6SHong Zhang   /* post the Irecv of j-structure */
49119566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
49129566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
491302c68681SHong Zhang 
49143e06a4e6SHong Zhang   /* post the Isend of j-structure */
49159566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
49163e06a4e6SHong Zhang 
49176497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
4918409913e3SHong Zhang     if (!len_s[proc]) continue;
491902c68681SHong Zhang     i = owners[proc];
49206497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
492151a7d1a8SHong Zhang     k++;
492251a7d1a8SHong Zhang   }
492351a7d1a8SHong Zhang 
49243e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
49259566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
49269566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
492702c68681SHong Zhang 
492802c68681SHong Zhang   /* send and recv i-structure */
49299566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
49309566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
493102c68681SHong Zhang 
49329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
49333e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
49346497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
493502c68681SHong Zhang     if (!len_s[proc]) continue;
49363e06a4e6SHong Zhang     /* form outgoing message for i-structure:
49373e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
49383e06a4e6SHong Zhang                [1:nrows]:           row index (global)
49393e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49403e06a4e6SHong Zhang     */
49412257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49423e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49433e06a4e6SHong Zhang     buf_si[0]   = nrows;
49443e06a4e6SHong Zhang     buf_si_i[0] = 0;
49453e06a4e6SHong Zhang     nrows       = 0;
49463e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49473e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49483e06a4e6SHong Zhang       if (anzi) {
49493e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49503e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49513e06a4e6SHong Zhang         nrows++;
49523e06a4e6SHong Zhang       }
49533e06a4e6SHong Zhang     }
49546497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
495502c68681SHong Zhang     k++;
49562257cef7SHong Zhang     buf_si += len_si[proc];
495702c68681SHong Zhang   }
49582257cef7SHong Zhang 
49599566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49609566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
496102c68681SHong Zhang 
49629566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
496348a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49643e06a4e6SHong Zhang 
49659566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49669566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49679566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49689566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49699566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49709566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49719566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
497258cb9c82SHong Zhang 
4973bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
497458cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
497658cb9c82SHong Zhang   bi[0] = 0;
497758cb9c82SHong Zhang 
4978be0fcf8dSHong Zhang   /* create and initialize a linked list */
4979be0fcf8dSHong Zhang   nlnk = N + 1;
49809566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
498158cb9c82SHong Zhang 
4982bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4983bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49849566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49852205254eSKarl Rupp 
498658cb9c82SHong Zhang   current_space = free_space;
498758cb9c82SHong Zhang 
4988bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49901d79065fSBarry Smith 
49913e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49922257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49933e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49943e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4995a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49963e06a4e6SHong Zhang   }
49972257cef7SHong Zhang 
4998d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4999bcc1bcd5SHong Zhang   len = 0;
500058cb9c82SHong Zhang   for (i = 0; i < m; i++) {
500158cb9c82SHong Zhang     bnzi = 0;
500258cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
500358cb9c82SHong Zhang     arow = owners[rank] + i;
500458cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
500558cb9c82SHong Zhang     aj   = a->j + ai[arow];
50069566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
500758cb9c82SHong Zhang     bnzi += nlnk;
500858cb9c82SHong Zhang     /* add received col data into lnk */
500951a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
501055d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
50113e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
50123e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
50139566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
50143e06a4e6SHong Zhang         bnzi += nlnk;
50159371c9d4SSatish Balay         nextrow[k]++;
50169371c9d4SSatish Balay         nextai[k]++;
50173e06a4e6SHong Zhang       }
501858cb9c82SHong Zhang     }
5019bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
502058cb9c82SHong Zhang 
502158cb9c82SHong Zhang     /* if free space is not available, make more free space */
502248a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
502358cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
50249566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
50259566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
5026bcc1bcd5SHong Zhang 
502758cb9c82SHong Zhang     current_space->array += bnzi;
502858cb9c82SHong Zhang     current_space->local_used += bnzi;
502958cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
503058cb9c82SHong Zhang 
503158cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
503258cb9c82SHong Zhang   }
5033bcc1bcd5SHong Zhang 
50349566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
5035bcc1bcd5SHong Zhang 
50369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
50379566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
50389566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
5039409913e3SHong Zhang 
5040bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50419566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50429566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
504354b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50449566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
504554b84b50SHong Zhang   } else {
50469566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
504754b84b50SHong Zhang   }
50489566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50499566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50509566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5051d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50529566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
505358cb9c82SHong Zhang 
505490431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50556abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5056affca5deSHong Zhang   merge->bi        = bi;
5057affca5deSHong Zhang   merge->bj        = bj;
505802c68681SHong Zhang   merge->buf_ri    = buf_ri;
505902c68681SHong Zhang   merge->buf_rj    = buf_rj;
50600298fd71SBarry Smith   merge->coi       = NULL;
50610298fd71SBarry Smith   merge->coj       = NULL;
50620298fd71SBarry Smith   merge->owners_co = NULL;
5063affca5deSHong Zhang 
50649566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5065bf0cc555SLisandro Dalcin 
5066affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50679566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50689566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
50699566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50709566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50719566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5072affca5deSHong Zhang   *mpimat = B_mpi;
507338f152feSBarry Smith 
50749566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5076e5f2cdd8SHong Zhang }
507725616d81SHong Zhang 
5078cc4c1da9SBarry Smith /*@
507911a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5080d4036a1aSHong Zhang   matrices from each processor
5081d4036a1aSHong Zhang 
5082d083f849SBarry Smith   Collective
5083d4036a1aSHong Zhang 
5084d4036a1aSHong Zhang   Input Parameters:
5085d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5086d4036a1aSHong Zhang . seqmat - the input sequential matrices
508711a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
508811a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
508911a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5090d4036a1aSHong Zhang 
5091d4036a1aSHong Zhang   Output Parameter:
5092d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5093d4036a1aSHong Zhang 
5094d4036a1aSHong Zhang   Level: advanced
5095d4036a1aSHong Zhang 
509611a5261eSBarry Smith   Note:
5097d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5098d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
5099b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
51002ef1f0ffSBarry Smith 
51011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5102d4036a1aSHong Zhang @*/
5103d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5104d71ae5a4SJacob Faibussowitsch {
51057e63b356SHong Zhang   PetscMPIInt size;
510655d1abb9SHong Zhang 
510755d1abb9SHong Zhang   PetscFunctionBegin;
51089566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
51097e63b356SHong Zhang   if (size == 1) {
51109566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
51117e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
51129566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
51137e63b356SHong Zhang     } else {
51149566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
51157e63b356SHong Zhang     }
51169566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51173ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
51187e63b356SHong Zhang   }
51199566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
512048a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
51219566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
51229566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
512455d1abb9SHong Zhang }
51254ebed01fSBarry Smith 
5126bc08b0f1SBarry Smith /*@
51272920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
51288a9c020eSBarry Smith 
51298a9c020eSBarry Smith   Not Collective
51308a9c020eSBarry Smith 
51312fe279fdSBarry Smith   Input Parameter:
513220f4b53cSBarry Smith . A - the matrix
51338a9c020eSBarry Smith 
51348a9c020eSBarry Smith   Output Parameter:
51358a9c020eSBarry Smith . A_loc - the local sequential matrix generated
51368a9c020eSBarry Smith 
51378a9c020eSBarry Smith   Level: developer
51388a9c020eSBarry Smith 
51398a9c020eSBarry Smith   Notes:
51402920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51412920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51422920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51432920cce0SJacob Faibussowitsch 
514411a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51458a9c020eSBarry Smith 
51462920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51472920cce0SJacob Faibussowitsch 
514811a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51498a9c020eSBarry Smith 
51501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51518a9c020eSBarry Smith @*/
5152d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5153d71ae5a4SJacob Faibussowitsch {
51548a9c020eSBarry Smith   PetscBool mpi;
51558a9c020eSBarry Smith 
51568a9c020eSBarry Smith   PetscFunctionBegin;
51578a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51588a9c020eSBarry Smith   if (mpi) {
51598a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51608a9c020eSBarry Smith   } else {
51618a9c020eSBarry Smith     *A_loc = A;
51628a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51638a9c020eSBarry Smith   }
51643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51658a9c020eSBarry Smith }
51668a9c020eSBarry Smith 
51678a9c020eSBarry Smith /*@
51682920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
516925616d81SHong Zhang 
517032fba14fSHong Zhang   Not Collective
517125616d81SHong Zhang 
517225616d81SHong Zhang   Input Parameters:
517325616d81SHong Zhang + A     - the matrix
517411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
517525616d81SHong Zhang 
517625616d81SHong Zhang   Output Parameter:
517725616d81SHong Zhang . A_loc - the local sequential matrix generated
517825616d81SHong Zhang 
517925616d81SHong Zhang   Level: developer
518025616d81SHong Zhang 
518177c65a98SStefano Zampini   Notes:
51822920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51832920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51842920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51852920cce0SJacob Faibussowitsch 
518611a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51878a9c020eSBarry Smith 
51882920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51892920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51902920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51912920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
519277c65a98SStefano Zampini 
51931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
519425616d81SHong Zhang @*/
5195d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5196d71ae5a4SJacob Faibussowitsch {
519701b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5198b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5199b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5200ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5201ce496241SStefano Zampini   PetscScalar       *ca, *cam;
520277c65a98SStefano Zampini   PetscMPIInt        size;
5203d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
52045a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
52058661ff28SBarry Smith   PetscBool          match;
520625616d81SHong Zhang 
520725616d81SHong Zhang   PetscFunctionBegin;
52089566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
520928b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
52109566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
521177c65a98SStefano Zampini   if (size == 1) {
521277c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52139566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
521477c65a98SStefano Zampini       *A_loc = mpimat->A;
521577c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52169566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
521777c65a98SStefano Zampini     }
52183ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
521977c65a98SStefano Zampini   }
522070a9ba44SHong Zhang 
52219566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5222f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5223f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
52249371c9d4SSatish Balay   ai = a->i;
52259371c9d4SSatish Balay   aj = a->j;
52269371c9d4SSatish Balay   bi = b->i;
52279371c9d4SSatish Balay   bj = b->j;
52289566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
52299566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5230ce496241SStefano Zampini   aa = aav;
5231ce496241SStefano Zampini   ba = bav;
523201b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
52339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5234dea91ad1SHong Zhang     ci[0] = 0;
5235ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
52369566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
52379566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5238dea91ad1SHong Zhang     k = 0;
523901b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52405a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52415a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
524201b7ae99SHong Zhang       /* off-diagonal portion of A */
52435a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52445a7d977cSHong Zhang         col = cmap[*bj];
52455a7d977cSHong Zhang         if (col >= cstart) break;
52469371c9d4SSatish Balay         cj[k] = col;
52479371c9d4SSatish Balay         bj++;
52485a7d977cSHong Zhang         ca[k++] = *ba++;
52495a7d977cSHong Zhang       }
52505a7d977cSHong Zhang       /* diagonal portion of A */
52515a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52525a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52535a7d977cSHong Zhang         ca[k++] = *aa++;
52545a7d977cSHong Zhang       }
52555a7d977cSHong Zhang       /* off-diagonal portion of A */
52565a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52575a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52585a7d977cSHong Zhang         ca[k++] = *ba++;
52595a7d977cSHong Zhang       }
526025616d81SHong Zhang     }
5261dea91ad1SHong Zhang     /* put together the new matrix */
52629566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5263dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5264dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5265dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5266e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5267e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5268dea91ad1SHong Zhang     mat->nonew   = 0;
52695a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52705a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5271fff043a9SJunchao Zhang     ci  = mat->i;
5272fff043a9SJunchao Zhang     cj  = mat->j;
52739566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52745a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52755a7d977cSHong Zhang       /* off-diagonal portion of A */
52765a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52775a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52785a7d977cSHong Zhang         col = cmap[*bj];
52795a7d977cSHong Zhang         if (col >= cstart) break;
52809371c9d4SSatish Balay         *cam++ = *ba++;
52819371c9d4SSatish Balay         bj++;
52825a7d977cSHong Zhang       }
52835a7d977cSHong Zhang       /* diagonal portion of A */
5284ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5285a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52865a7d977cSHong Zhang       /* off-diagonal portion of A */
5287f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52889371c9d4SSatish Balay         *cam++ = *ba++;
52899371c9d4SSatish Balay         bj++;
5290f33d1a9aSHong Zhang       }
52915a7d977cSHong Zhang     }
52929566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
529398921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52969566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
529825616d81SHong Zhang }
529925616d81SHong Zhang 
5300ed502f03SStefano Zampini /*@
530111a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
53024cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5303ed502f03SStefano Zampini 
5304ed502f03SStefano Zampini   Not Collective
5305ed502f03SStefano Zampini 
5306ed502f03SStefano Zampini   Input Parameters:
5307ed502f03SStefano Zampini + A     - the matrix
530811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5309ed502f03SStefano Zampini 
5310d8d19677SJose E. Roman   Output Parameters:
53112ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5312ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5313ed502f03SStefano Zampini 
5314ed502f03SStefano Zampini   Level: developer
5315ed502f03SStefano Zampini 
531611a5261eSBarry Smith   Note:
53172ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
53184cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5319ed502f03SStefano Zampini 
53201cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5321ed502f03SStefano Zampini @*/
5322d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5323d71ae5a4SJacob Faibussowitsch {
5324ed502f03SStefano Zampini   Mat             Ao, Ad;
5325ed502f03SStefano Zampini   const PetscInt *cmap;
5326ed502f03SStefano Zampini   PetscMPIInt     size;
5327ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5328ed502f03SStefano Zampini 
5329ed502f03SStefano Zampini   PetscFunctionBegin;
53309566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
53319566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5332ed502f03SStefano Zampini   if (size == 1) {
5333ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
53349566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5335ed502f03SStefano Zampini       *A_loc = Ad;
5336ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53379566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5338ed502f03SStefano Zampini     }
53399566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53403ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5341ed502f03SStefano Zampini   }
53429566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53439566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5344ed502f03SStefano Zampini   if (f) {
53459566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5346ed502f03SStefano Zampini   } else {
5347ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5348ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5349ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5350ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5351ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5352ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5353ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5354ed502f03SStefano Zampini     PetscScalar       *ca;
5355ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5356ed502f03SStefano Zampini 
53579566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53589566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53599566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53609566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5361ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5362ed502f03SStefano Zampini       PetscInt k;
53639566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53649566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53659566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5366ed502f03SStefano Zampini       ci[0] = 0;
5367ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5368ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5369ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5370ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5371ed502f03SStefano Zampini         /* diagonal portion of A */
5372ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5373ed502f03SStefano Zampini           cj[k] = *aj++;
5374ed502f03SStefano Zampini           ca[k] = *aa++;
5375ed502f03SStefano Zampini         }
5376ed502f03SStefano Zampini         /* off-diagonal portion of A */
5377ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5378ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5379ed502f03SStefano Zampini           ca[k] = *ba++;
5380ed502f03SStefano Zampini         }
5381ed502f03SStefano Zampini       }
5382ed502f03SStefano Zampini       /* put together the new matrix */
53839566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5384ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5385ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5386ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5387ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5388ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5389ed502f03SStefano Zampini       c->nonew   = 0;
53909566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5391ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53929566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5393ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5394ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5395ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5396ed502f03SStefano Zampini         /* diagonal portion of A */
5397ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5398ed502f03SStefano Zampini         /* off-diagonal portion of A */
5399ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5400ed502f03SStefano Zampini       }
54019566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
540298921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
54039566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
54049566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5405ed502f03SStefano Zampini     if (glob) {
5406ed502f03SStefano Zampini       PetscInt cst, *gidx;
5407ed502f03SStefano Zampini 
54089566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
54099566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5410ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5411ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
54129566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5413ed502f03SStefano Zampini     }
5414ed502f03SStefano Zampini   }
54159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
54163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5417ed502f03SStefano Zampini }
5418ed502f03SStefano Zampini 
541932fba14fSHong Zhang /*@C
542011a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
542132fba14fSHong Zhang 
542232fba14fSHong Zhang   Not Collective
542332fba14fSHong Zhang 
542432fba14fSHong Zhang   Input Parameters:
542532fba14fSHong Zhang + A     - the matrix
542611a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
542720f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
542820f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
542932fba14fSHong Zhang 
543032fba14fSHong Zhang   Output Parameter:
543132fba14fSHong Zhang . A_loc - the local sequential matrix generated
543232fba14fSHong Zhang 
543332fba14fSHong Zhang   Level: developer
543432fba14fSHong Zhang 
54351cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
543632fba14fSHong Zhang @*/
5437d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5438d71ae5a4SJacob Faibussowitsch {
543932fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
544032fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
544132fba14fSHong Zhang   IS          isrowa, iscola;
544232fba14fSHong Zhang   Mat        *aloc;
54434a2b5492SBarry Smith   PetscBool   match;
544432fba14fSHong Zhang 
544532fba14fSHong Zhang   PetscFunctionBegin;
54469566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
544728b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54489566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
544932fba14fSHong Zhang   if (!row) {
54509371c9d4SSatish Balay     start = A->rmap->rstart;
54519371c9d4SSatish Balay     end   = A->rmap->rend;
54529566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
545332fba14fSHong Zhang   } else {
545432fba14fSHong Zhang     isrowa = *row;
545532fba14fSHong Zhang   }
545632fba14fSHong Zhang   if (!col) {
5457d0f46423SBarry Smith     start = A->cmap->rstart;
545832fba14fSHong Zhang     cmap  = a->garray;
5459d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5460d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54619566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
546232fba14fSHong Zhang     ncols = 0;
546332fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
546432fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
546532fba14fSHong Zhang       else break;
546632fba14fSHong Zhang     }
546732fba14fSHong Zhang     imark = i;
546832fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
546932fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54709566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
547132fba14fSHong Zhang   } else {
547232fba14fSHong Zhang     iscola = *col;
547332fba14fSHong Zhang   }
547432fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54759566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
547632fba14fSHong Zhang     aloc[0] = *A_loc;
547732fba14fSHong Zhang   }
54789566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5479109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54809566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5481109e0772SStefano Zampini   }
548232fba14fSHong Zhang   *A_loc = aloc[0];
54839566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
548448a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
548548a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54869566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
548832fba14fSHong Zhang }
548932fba14fSHong Zhang 
54905c65b9ecSFande Kong /*
54915c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54925c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54935c65b9ecSFande Kong  * on a global size.
54945c65b9ecSFande Kong  * */
5495ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5496d71ae5a4SJacob Faibussowitsch {
54975c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5498f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5499131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5500131c27b5Sprj-   PetscMPIInt            owner;
55015c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
55025c65b9ecSFande Kong   const PetscInt        *lrowindices;
55035c65b9ecSFande Kong   PetscSF                sf, osf;
55045c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
55055c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
55065c65b9ecSFande Kong   MPI_Comm               comm;
55075c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5508fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
55095c65b9ecSFande Kong 
55105c65b9ecSFande Kong   PetscFunctionBegin;
55119566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
55125c65b9ecSFande Kong   /* plocalsize is the number of roots
55135c65b9ecSFande Kong    * nrows is the number of leaves
55145c65b9ecSFande Kong    * */
55159566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
55169566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
55179566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
55189566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
55195c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55205c65b9ecSFande Kong     /* Find a remote index and an owner for a row
55215c65b9ecSFande Kong      * The row could be local or remote
55225c65b9ecSFande Kong      * */
552334bcad68SFande Kong     owner = 0;
552434bcad68SFande Kong     lidx  = 0;
55259566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
55265c65b9ecSFande Kong     iremote[i].index = lidx;
55275c65b9ecSFande Kong     iremote[i].rank  = owner;
55285c65b9ecSFande Kong   }
55295c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
55309566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5531f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
55325c65b9ecSFande Kong    * offsets
55335c65b9ecSFande Kong    * */
55349566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55359566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55369566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5537bc8e477aSFande Kong 
55389566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
55399566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55409566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55415c65b9ecSFande Kong   roffsets[0] = 0;
55425c65b9ecSFande Kong   roffsets[1] = 0;
55435c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55444cf0e950SBarry Smith     /* diagonal */
55455c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55464cf0e950SBarry Smith     /* off-diagonal */
55475c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55485c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55495c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55505c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55515c65b9ecSFande Kong   }
55529566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55539566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55545c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55559566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55569566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55579566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55589566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55599566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55609566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55619566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55625c65b9ecSFande Kong   dntotalcols = 0;
55635c65b9ecSFande Kong   ontotalcols = 0;
5564bc8e477aSFande Kong   ncol        = 0;
55655c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55665c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5567bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55684cf0e950SBarry Smith     /* diagonal */
55695c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55704cf0e950SBarry Smith     /* off-diagonal */
55715c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55725c65b9ecSFande Kong   }
55735c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55745c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55755c65b9ecSFande Kong    * */
55769566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55779566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55789566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55795c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55804cf0e950SBarry Smith   /* diagonal */
55819566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55824cf0e950SBarry Smith   /* off-diagonal */
55839566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55844cf0e950SBarry Smith   /* diagonal */
55859566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55864cf0e950SBarry Smith   /* off-diagonal */
55879566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55885c65b9ecSFande Kong   dntotalcols = 0;
55895c65b9ecSFande Kong   ontotalcols = 0;
55905c65b9ecSFande Kong   ntotalcols  = 0;
55915c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
559234bcad68SFande Kong     owner = 0;
55939566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55945c65b9ecSFande Kong     /* Set iremote for diag matrix */
55955c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55965c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55975c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55985c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55995c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
56005c65b9ecSFande Kong     }
56014cf0e950SBarry Smith     /* off-diagonal */
56025c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
56035c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
56045c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
56055c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
56065c65b9ecSFande Kong     }
56075c65b9ecSFande Kong   }
56089566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
56099566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
56109566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
56119566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
56125c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
56135c65b9ecSFande Kong    * Diag matrix
56145c65b9ecSFande Kong    * */
56159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
56169566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
56179566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
56185c65b9ecSFande Kong 
56199566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
56204cf0e950SBarry Smith   /* off-diagonal */
56219566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
56229566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
56239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
56249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56259566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56264cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
56279566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56289566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56299566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
56305c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
56315c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
56329566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56335c65b9ecSFande Kong   /* We want P_oth store global indices */
56349566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
56355c65b9ecSFande Kong   /* Use memory scalable approach */
56369566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
56379566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
56389566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56399566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56405c65b9ecSFande Kong   /* Convert back to local indices */
56415c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56429566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56435c65b9ecSFande Kong   nout = 0;
56449566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
564508401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56469566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56475c65b9ecSFande Kong   /* Exchange values */
56489566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56499566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56525c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56535c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56549566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56565c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56579566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56589566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56599566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56609566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56625c65b9ecSFande Kong }
56635c65b9ecSFande Kong 
56645c65b9ecSFande Kong /*
56655c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56665c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56675c65b9ecSFande Kong  * */
5668d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5669d71ae5a4SJacob Faibussowitsch {
56705c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5671bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5672bc8e477aSFande Kong   IS          rows, map;
5673bc8e477aSFande Kong   PetscHMapI  hamp;
5674bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56755c65b9ecSFande Kong   MPI_Comm    comm;
56765c65b9ecSFande Kong   PetscSF     sf, osf;
5677bc8e477aSFande Kong   PetscBool   has;
56785c65b9ecSFande Kong 
56795c65b9ecSFande Kong   PetscFunctionBegin;
56809566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56819566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56825c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56835c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56845c65b9ecSFande Kong    * */
56855c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56865c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5687eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56889566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5689bc8e477aSFande Kong     count = 0;
5690bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5691bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5692bc8e477aSFande Kong       key = a->garray[i] / dof;
56939566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5694bc8e477aSFande Kong       if (!has) {
5695bc8e477aSFande Kong         mapping[i] = count;
56969566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5697bc8e477aSFande Kong       } else {
5698bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5699bc8e477aSFande Kong         mapping[i] = count - 1;
57005c65b9ecSFande Kong       }
5701bc8e477aSFande Kong     }
57029566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
57039566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5704eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
57059566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
57065c65b9ecSFande Kong     off = 0;
57079566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
57089566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
57099566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
57109566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
57115c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
57129566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
57139566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
57149566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
57159566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
57169566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
57175c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
57185c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
571935cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5720fff043a9SJunchao Zhang      */
5721fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5722fff043a9SJunchao Zhang 
57239566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
57249566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
572508401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
57265c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
57275c65b9ecSFande Kong     /* Update values in place */
57289566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
57299566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
57309566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57319566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57329566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57339566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57349566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
57359566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
57366718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
57379566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
57383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57395c65b9ecSFande Kong }
57405c65b9ecSFande Kong 
574125616d81SHong Zhang /*@C
574220f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
574325616d81SHong Zhang 
5744c3339decSBarry Smith   Collective
574525616d81SHong Zhang 
574625616d81SHong Zhang   Input Parameters:
574711a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
574811a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
574911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
575025616d81SHong Zhang 
5751f1a722f8SMatthew G. Knepley   Output Parameters:
575227430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
575327430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5754f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
575525616d81SHong Zhang 
575625616d81SHong Zhang   Level: developer
575725616d81SHong Zhang 
575820f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
575925616d81SHong Zhang @*/
5760d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5761d71ae5a4SJacob Faibussowitsch {
5762899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5763b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
576425616d81SHong Zhang   IS          isrowb, iscolb;
57650298fd71SBarry Smith   Mat        *bseq = NULL;
576625616d81SHong Zhang 
576725616d81SHong Zhang   PetscFunctionBegin;
576820f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
576920f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57709566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
577125616d81SHong Zhang 
577225616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5773d0f46423SBarry Smith     start = A->cmap->rstart;
577425616d81SHong Zhang     cmap  = a->garray;
5775d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5776d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
577825616d81SHong Zhang     ncols = 0;
57790390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
578025616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
578125616d81SHong Zhang       else break;
578225616d81SHong Zhang     }
578325616d81SHong Zhang     imark = i;
57840390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57850390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57869566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57879566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
578825616d81SHong Zhang   } else {
578908401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57909371c9d4SSatish Balay     isrowb = *rowb;
57919371c9d4SSatish Balay     iscolb = *colb;
57929566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
579325616d81SHong Zhang     bseq[0] = *B_seq;
579425616d81SHong Zhang   }
57959566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
579625616d81SHong Zhang   *B_seq = bseq[0];
57979566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
579825616d81SHong Zhang   if (!rowb) {
57999566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
580025616d81SHong Zhang   } else {
580125616d81SHong Zhang     *rowb = isrowb;
580225616d81SHong Zhang   }
580325616d81SHong Zhang   if (!colb) {
58049566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
580525616d81SHong Zhang   } else {
580625616d81SHong Zhang     *colb = iscolb;
580725616d81SHong Zhang   }
58089566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
58093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
581025616d81SHong Zhang }
5811429d309bSHong Zhang 
5812f8487c73SHong Zhang /*
581327430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
581401b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5815429d309bSHong Zhang 
5816c3339decSBarry Smith     Collective
5817429d309bSHong Zhang 
5818429d309bSHong Zhang    Input Parameters:
581927430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
582027430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5821429d309bSHong Zhang 
5822429d309bSHong Zhang    Output Parameter:
58230298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
58240298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
58250298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5826598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5827429d309bSHong Zhang 
582811a5261eSBarry Smith     Developer Note:
582911a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
58306eb45d04SBarry Smith      for this matrix. This is not desirable..
58316eb45d04SBarry Smith 
5832429d309bSHong Zhang     Level: developer
5833429d309bSHong Zhang 
5834f8487c73SHong Zhang */
58356497c311SBarry Smith 
5836d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5837d71ae5a4SJacob Faibussowitsch {
5838899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
58394b8d542aSHong Zhang   VecScatter         ctx;
5840ce94432eSBarry Smith   MPI_Comm           comm;
58413515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58426497c311SBarry Smith   PetscMPIInt        nrecvs, nsends;
58433515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5844277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
58456497c311SBarry Smith   PetscInt           i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len;
5846277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5847ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5848ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5849429d309bSHong Zhang 
5850429d309bSHong Zhang   PetscFunctionBegin;
58519566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58529566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5853a7c7454dSHong Zhang 
585420f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
585520f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58569566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58579566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5858a6b2eed2SHong Zhang 
5859ec07b8f8SHong Zhang   if (size == 1) {
5860ec07b8f8SHong Zhang     startsj_s = NULL;
5861ec07b8f8SHong Zhang     bufa_ptr  = NULL;
586252f7967eSHong Zhang     *B_oth    = NULL;
58633ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5864ec07b8f8SHong Zhang   }
5865ec07b8f8SHong Zhang 
5866fa83eaafSHong Zhang   ctx = a->Mvctx;
58674b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58684b8d542aSHong Zhang 
58699566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58703515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58719566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58729566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5874ddea5d60SJunchao Zhang   rwaits = reqs;
58758e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5876429d309bSHong Zhang 
5877b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5878429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5879a6b2eed2SHong Zhang     /* i-array */
5880a6b2eed2SHong Zhang     /*  post receives */
58819566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5882a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
588374268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5884e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58856497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5886429d309bSHong Zhang     }
5887a6b2eed2SHong Zhang 
5888a6b2eed2SHong Zhang     /* pack the outgoing message */
58899566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58902205254eSKarl Rupp 
58912205254eSKarl Rupp     sstartsj[0] = 0;
58922205254eSKarl Rupp     rstartsj[0] = 0;
5893a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58943515ee7fSJunchao Zhang     if (nsends) {
58953515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58969566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58973515ee7fSJunchao Zhang     }
5898a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58993515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5900e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
590187025532SHong Zhang       for (j = 0; j < nrows; j++) {
5902d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5903e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
59049566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
59052205254eSKarl Rupp 
5906e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
59072205254eSKarl Rupp 
5908e42f35eeSHong Zhang           len += ncols;
59099566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5910e42f35eeSHong Zhang         }
5911a6b2eed2SHong Zhang         k++;
5912429d309bSHong Zhang       }
59136497c311SBarry Smith       PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
59142205254eSKarl Rupp 
5915dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5916429d309bSHong Zhang     }
591787025532SHong Zhang     /* recvs and sends of i-array are completed */
59189566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59199566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5920e42f35eeSHong Zhang 
5921a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
59229566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
59239566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5924a6b2eed2SHong Zhang 
592587025532SHong Zhang     /* create i-array of B_oth */
59269566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
59272205254eSKarl Rupp 
592887025532SHong Zhang     b_othi[0] = 0;
5929a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5930a6b2eed2SHong Zhang     k         = 0;
5931a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
59323515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
59333515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
593487025532SHong Zhang       for (j = 0; j < nrows; j++) {
593587025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
59369566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5937f91af8c7SBarry Smith         k++;
5938a6b2eed2SHong Zhang       }
5939dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5940a6b2eed2SHong Zhang     }
59419566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5942a6b2eed2SHong Zhang 
59436aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59449566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59459566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5946a6b2eed2SHong Zhang 
594787025532SHong Zhang     /* j-array */
5948a6b2eed2SHong Zhang     /*  post receives of j-array */
5949a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
595087025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59516497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5952a6b2eed2SHong Zhang     }
5953e42f35eeSHong Zhang 
5954e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59553515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5956a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5957e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5958a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
595987025532SHong Zhang       for (j = 0; j < nrows; j++) {
5960d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5961e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59629566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5963ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59649566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5965e42f35eeSHong Zhang         }
596687025532SHong Zhang       }
59676497c311SBarry Smith       PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
596887025532SHong Zhang     }
596987025532SHong Zhang 
597087025532SHong Zhang     /* recvs and sends of j-array are completed */
59719566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
597287025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5973b7f45c76SHong Zhang     sstartsj = *startsj_s;
59741d79065fSBarry Smith     rstartsj = *startsj_r;
597587025532SHong Zhang     bufa     = *bufa_ptr;
59769566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5977ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
597887025532SHong Zhang 
597987025532SHong Zhang   /* a-array */
598087025532SHong Zhang   /*  post receives of a-array */
598187025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
598287025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59836497c311SBarry Smith     PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
598487025532SHong Zhang   }
5985e42f35eeSHong Zhang 
5986e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59873515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
598887025532SHong Zhang   for (i = 0; i < nsends; i++) {
5989e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
599087025532SHong Zhang     bufA  = bufa + sstartsj[i];
599187025532SHong Zhang     for (j = 0; j < nrows; j++) {
5992d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5993e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59949566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5995ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59969566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5997e42f35eeSHong Zhang       }
5998a6b2eed2SHong Zhang     }
59996497c311SBarry Smith     PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
6000a6b2eed2SHong Zhang   }
600187025532SHong Zhang   /* recvs and sends of a-array are completed */
60029566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
60039566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
6004a6b2eed2SHong Zhang 
600587025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
6006dd460d27SBarry Smith     Mat_SeqAIJ *b_oth;
6007dd460d27SBarry Smith 
6008a6b2eed2SHong Zhang     /* put together the new matrix */
60099566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
6010a6b2eed2SHong Zhang 
6011a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
6012a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
601387025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
6014e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
6015e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
601687025532SHong Zhang     b_oth->nonew   = 0;
6017a6b2eed2SHong Zhang 
60189566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
6019b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
60209566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
60219566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
6022dea91ad1SHong Zhang     } else {
6023b7f45c76SHong Zhang       *startsj_s = sstartsj;
60241d79065fSBarry Smith       *startsj_r = rstartsj;
602587025532SHong Zhang       *bufa_ptr  = bufa;
602687025532SHong Zhang     }
6027fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
60289566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
6029dea91ad1SHong Zhang   }
60303515ee7fSJunchao Zhang 
60319566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
60329566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
60339566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
60343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6035429d309bSHong Zhang }
6036ccd8e176SBarry Smith 
6037cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
6038cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
6039ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60409779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6041a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6042191b95cbSRichard Tran Mills #endif
6043ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6044cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60455d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6046cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60475d7652ecSHong Zhang #endif
6048d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6049d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6050d24d4204SJose E. Roman #endif
605163c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
605263c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
605363c07aadSStefano Zampini #endif
60543338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60553338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60563338378cSStefano Zampini #endif
6057d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6058d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6059d5e393b6SSuyash Tandon #endif
60603d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60613d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60623d0639e7SStefano Zampini #endif
6063d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60644222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60654222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
606617667f90SBarry Smith 
6067fc4dec0aSBarry Smith /*
6068fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6069fc4dec0aSBarry Smith 
6070fc4dec0aSBarry Smith                n                       p                          p
60712da392ccSBarry Smith         [             ]       [             ]         [                 ]
60722da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60732da392ccSBarry Smith         [             ]       [             ]         [                 ]
6074fc4dec0aSBarry Smith 
6075fc4dec0aSBarry Smith */
6076d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6077d71ae5a4SJacob Faibussowitsch {
6078fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6079fc4dec0aSBarry Smith 
6080fc4dec0aSBarry Smith   PetscFunctionBegin;
60819566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60829566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
6083fb842aefSJose E. Roman   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct));
60849566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60859566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60867fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60879566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60889566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6090fc4dec0aSBarry Smith }
6091fc4dec0aSBarry Smith 
6092d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6093d71ae5a4SJacob Faibussowitsch {
60946718818eSStefano Zampini   PetscBool cisdense;
6095fc4dec0aSBarry Smith 
6096fc4dec0aSBarry Smith   PetscFunctionBegin;
609708401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60989566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60999566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6100d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
610148a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
61029566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6103f75ecaa4SHong Zhang 
61044222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
61053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6106fc4dec0aSBarry Smith }
6107fc4dec0aSBarry Smith 
6108d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6109d71ae5a4SJacob Faibussowitsch {
61104222ddf1SHong Zhang   Mat_Product *product = C->product;
61114222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6112fc4dec0aSBarry Smith 
6113fc4dec0aSBarry Smith   PetscFunctionBegin;
611420f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
611520f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
61164222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
61174222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
61183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6119fc4dec0aSBarry Smith }
6120fc4dec0aSBarry Smith 
6121d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6122d71ae5a4SJacob Faibussowitsch {
61234222ddf1SHong Zhang   Mat_Product *product = C->product;
61244222ddf1SHong Zhang 
61254222ddf1SHong Zhang   PetscFunctionBegin;
612648a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
61273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61284222ddf1SHong Zhang }
6129394ed5ebSJunchao Zhang 
613027430b45SBarry Smith /*
613127430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6132394ed5ebSJunchao Zhang 
6133394ed5ebSJunchao Zhang   Input Parameters:
6134394ed5ebSJunchao Zhang 
6135651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6136651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6137394ed5ebSJunchao Zhang 
6138158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6139394ed5ebSJunchao Zhang 
6140394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6141394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6142394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6143394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6144394ed5ebSJunchao Zhang 
6145394ed5ebSJunchao Zhang     Similar for Set2.
6146394ed5ebSJunchao Zhang 
6147394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6148394ed5ebSJunchao Zhang 
6149158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6150394ed5ebSJunchao Zhang 
6151394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6152394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6153394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6154394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6155394ed5ebSJunchao Zhang */
6156d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6157d71ae5a4SJacob Faibussowitsch {
6158394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6159394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6160394ed5ebSJunchao Zhang 
6161394ed5ebSJunchao Zhang   PetscFunctionBegin;
61629566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6163394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6164394ed5ebSJunchao Zhang   i[0]        = 0;
6165394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6166394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6167394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6168394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6169394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6170394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6171394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6172394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6173394ed5ebSJunchao Zhang         imap1[t1] = t;
6174394ed5ebSJunchao Zhang         imap2[t2] = t;
6175394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6176394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61779371c9d4SSatish Balay         t1++;
61789371c9d4SSatish Balay         t2++;
61799371c9d4SSatish Balay         t++;
6180394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6181394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6182394ed5ebSJunchao Zhang         imap1[t1] = t;
6183394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61849371c9d4SSatish Balay         t1++;
61859371c9d4SSatish Balay         t++;
6186394ed5ebSJunchao Zhang       } else {
6187394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6188394ed5ebSJunchao Zhang         imap2[t2] = t;
6189394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61909371c9d4SSatish Balay         t2++;
61919371c9d4SSatish Balay         t++;
6192394ed5ebSJunchao Zhang       }
6193394ed5ebSJunchao Zhang     }
6194394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6195394ed5ebSJunchao Zhang     while (b1 < e1) {
6196394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6197394ed5ebSJunchao Zhang       imap1[t1] = t;
6198394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61999371c9d4SSatish Balay       t1++;
62009371c9d4SSatish Balay       t++;
6201394ed5ebSJunchao Zhang     }
6202394ed5ebSJunchao Zhang     while (b2 < e2) {
6203394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6204394ed5ebSJunchao Zhang       imap2[t2] = t;
6205394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
62069371c9d4SSatish Balay       t2++;
62079371c9d4SSatish Balay       t++;
6208394ed5ebSJunchao Zhang     }
62096497c311SBarry Smith     PetscCall(PetscIntCast(t, i + r + 1));
6210394ed5ebSJunchao Zhang   }
62113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6212394ed5ebSJunchao Zhang }
6213394ed5ebSJunchao Zhang 
621427430b45SBarry Smith /*
621527430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6216394ed5ebSJunchao Zhang 
6217394ed5ebSJunchao Zhang   Input Parameters:
6218394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6219394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6220394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6221394ed5ebSJunchao Zhang 
6222394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6223394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6224394ed5ebSJunchao Zhang 
6225394ed5ebSJunchao Zhang   Output Parameters:
6226394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6227394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6228394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6229394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6230394ed5ebSJunchao Zhang 
6231394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6232158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6233158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6234394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6235394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6236394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6237394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6238394ed5ebSJunchao Zhang 
6239394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6240394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6241394ed5ebSJunchao Zhang 
6242394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6243394ed5ebSJunchao Zhang 
6244158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6245394ed5ebSJunchao Zhang */
6246d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6247d71ae5a4SJacob Faibussowitsch {
6248394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6249394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6250394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6251394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6252394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6253394ed5ebSJunchao Zhang 
6254394ed5ebSJunchao Zhang   PetscFunctionBegin;
62559566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62569566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6257394ed5ebSJunchao Zhang   m = rend - rstart;
6258394ed5ebSJunchao Zhang 
6259651b1cf9SStefano Zampini   /* Skip negative rows */
6260651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62619371c9d4SSatish Balay     if (i[k] >= 0) break;
6262394ed5ebSJunchao Zhang 
6263394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6264394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6265394ed5ebSJunchao Zhang   */
6266394ed5ebSJunchao Zhang   while (k < n) {
6267394ed5ebSJunchao Zhang     row = i[k];
6268394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62699371c9d4SSatish Balay     for (s = k; s < n; s++)
62709371c9d4SSatish Balay       if (i[s] != row) break;
6271651b1cf9SStefano Zampini 
62721690c2aeSBarry Smith     /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */
6273394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
62741690c2aeSBarry Smith       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX;
627554c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6276394ed5ebSJunchao Zhang     }
62779566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6278158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6279394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6280394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6281394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6282394ed5ebSJunchao Zhang 
6283394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6284394ed5ebSJunchao Zhang     Atot += mid - k;
6285394ed5ebSJunchao Zhang     Btot += s - mid;
6286394ed5ebSJunchao Zhang 
6287651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6288394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6289394ed5ebSJunchao Zhang       col = j[p];
62909371c9d4SSatish Balay       do {
62911690c2aeSBarry Smith         j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */
62929371c9d4SSatish Balay         p++;
6293651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6294394ed5ebSJunchao Zhang       Annz++;
6295394ed5ebSJunchao Zhang     }
6296394ed5ebSJunchao Zhang 
6297651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6298394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6299394ed5ebSJunchao Zhang       col = j[p];
6300d71ae5a4SJacob Faibussowitsch       do {
6301d71ae5a4SJacob Faibussowitsch         p++;
6302d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6303394ed5ebSJunchao Zhang       Bnnz++;
6304394ed5ebSJunchao Zhang     }
6305394ed5ebSJunchao Zhang     k = s;
6306394ed5ebSJunchao Zhang   }
6307394ed5ebSJunchao Zhang 
6308394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6309158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6310158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6311158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6312158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6313394ed5ebSJunchao Zhang 
63146aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6315394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6316394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6317394ed5ebSJunchao Zhang     k   = rowBegin[r];
6318394ed5ebSJunchao Zhang     mid = rowMid[r];
6319394ed5ebSJunchao Zhang     s   = rowEnd[r];
63208e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
63218e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6322394ed5ebSJunchao Zhang     Atot += mid - k;
6323394ed5ebSJunchao Zhang     Btot += s - mid;
6324394ed5ebSJunchao Zhang 
6325394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6326394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6327394ed5ebSJunchao Zhang       col = j[p];
6328394ed5ebSJunchao Zhang       q   = p;
6329d71ae5a4SJacob Faibussowitsch       do {
6330d71ae5a4SJacob Faibussowitsch         p++;
6331d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6332394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6333394ed5ebSJunchao Zhang       Annz++;
6334394ed5ebSJunchao Zhang     }
6335394ed5ebSJunchao Zhang 
6336394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6337394ed5ebSJunchao Zhang       col = j[p];
6338394ed5ebSJunchao Zhang       q   = p;
6339d71ae5a4SJacob Faibussowitsch       do {
6340d71ae5a4SJacob Faibussowitsch         p++;
6341d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6342394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6343394ed5ebSJunchao Zhang       Bnnz++;
6344394ed5ebSJunchao Zhang     }
6345394ed5ebSJunchao Zhang   }
6346394ed5ebSJunchao Zhang   /* Output */
6347394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6348394ed5ebSJunchao Zhang   *Annz_  = Annz;
6349394ed5ebSJunchao Zhang   *Atot_  = Atot;
6350394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6351394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6352394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6353394ed5ebSJunchao Zhang   *Btot_  = Btot;
6354394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6356394ed5ebSJunchao Zhang }
6357394ed5ebSJunchao Zhang 
635827430b45SBarry Smith /*
635927430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6360158ec288SJunchao Zhang 
6361158ec288SJunchao Zhang   Input Parameters:
6362158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6363158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6364158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6365651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6366158ec288SJunchao Zhang 
6367158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6368158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6369158ec288SJunchao Zhang 
6370158ec288SJunchao Zhang   Example:
6371158ec288SJunchao Zhang     nnz1 = 4
6372158ec288SJunchao Zhang     nnz  = 6
6373158ec288SJunchao Zhang     imap = [1,3,4,5]
6374158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6375158ec288SJunchao Zhang    then,
6376158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6377158ec288SJunchao Zhang */
6378d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6379d71ae5a4SJacob Faibussowitsch {
6380158ec288SJunchao Zhang   PetscCount k, p;
6381158ec288SJunchao Zhang 
6382158ec288SJunchao Zhang   PetscFunctionBegin;
6383158ec288SJunchao Zhang   jmap_new[0] = 0;
6384158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6385158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6386158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6387158ec288SJunchao Zhang   }
6388158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6390158ec288SJunchao Zhang }
6391158ec288SJunchao Zhang 
63922c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data)
63932c4ab24aSJunchao Zhang {
63942c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data;
63952c4ab24aSJunchao Zhang 
63962c4ab24aSJunchao Zhang   PetscFunctionBegin;
63972c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63982c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63992c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
64002c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
64012c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
64022c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
64032c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
64042c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
64052c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
64062c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
64072c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
64082c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
64092c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
64102c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
64112c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
64122c4ab24aSJunchao Zhang }
64132c4ab24aSJunchao Zhang 
6414d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6415d71ae5a4SJacob Faibussowitsch {
6416394ed5ebSJunchao Zhang   MPI_Comm             comm;
6417394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6418394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6419394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6420394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
64212c4ab24aSJunchao Zhang   PetscContainer       container;
64222c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6423394ed5ebSJunchao Zhang 
6424394ed5ebSJunchao Zhang   PetscFunctionBegin;
64259566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
64269566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6427cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6428eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6429cbc6b225SStefano Zampini #else
64309566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6431cbc6b225SStefano Zampini #endif
64329566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6433cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6434cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6435cbc6b225SStefano Zampini 
64369566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
64379566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
64389566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
64399566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64409566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64419566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64429566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64439566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64449566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6445394ed5ebSJunchao Zhang 
64466aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6447394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6448394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6449e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6450e8729f6fSJunchao Zhang 
6451e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6452394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6453394ed5ebSJunchao Zhang 
6454394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6455394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6456394ed5ebSJunchao Zhang      will have positive row indices.
6457394ed5ebSJunchao Zhang   */
6458394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
64591690c2aeSBarry Smith     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN;                /* e.g., -2^31, minimal to move them ahead */
64601690c2aeSBarry Smith     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */
6461f7d195e4SLawrence Mitchell     else {
6462f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
64631690c2aeSBarry Smith       if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */
6464f7d195e4SLawrence Mitchell     }
6465394ed5ebSJunchao Zhang   }
6466394ed5ebSJunchao Zhang 
6467da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64689566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6469651b1cf9SStefano Zampini 
6470651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6471651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64721690c2aeSBarry Smith     if (i1[k] > PETSC_INT_MIN) break;
64736497c311SBarry Smith   PetscCount i1start = k;
6474651b1cf9SStefano Zampini 
64751690c2aeSBarry Smith   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */
64761690c2aeSBarry Smith   for (; k < rem; k++) i1[k] += PETSC_INT_MAX;                                    /* Revert row indices of local rows*/
6477394ed5ebSJunchao Zhang 
6478394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6479394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6480394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6481394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6482394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6483394ed5ebSJunchao Zhang   const PetscInt *ranges;
6484394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6485394ed5ebSJunchao Zhang 
64869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6488394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6489394ed5ebSJunchao Zhang     PetscMPIInt owner;
6490394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6491cbc6b225SStefano Zampini 
6492394ed5ebSJunchao Zhang     /* Locate a row range */
6493394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64949566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6495394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6496394ed5ebSJunchao Zhang 
6497394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
64989566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6499394ed5ebSJunchao Zhang 
6500394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6501394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6502394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6503394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6504394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6505cbc6b225SStefano Zampini 
65069566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
65079566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
65089566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
65099566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6510394ed5ebSJunchao Zhang       sendto   = sendto2;
6511394ed5ebSJunchao Zhang       nentries = nentries2;
6512394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6513394ed5ebSJunchao Zhang     }
6514394ed5ebSJunchao Zhang     sendto[nsend] = owner;
65156497c311SBarry Smith     PetscCall(PetscIntCast(p - k, &nentries[nsend]));
6516394ed5ebSJunchao Zhang     nsend++;
6517394ed5ebSJunchao Zhang     k = p;
6518394ed5ebSJunchao Zhang   }
6519394ed5ebSJunchao Zhang 
6520394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6521394ed5ebSJunchao Zhang   PetscSF      sf1;
6522394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6523394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6524394ed5ebSJunchao Zhang   PetscInt    *offsets;
6525394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6526394ed5ebSJunchao Zhang 
65279566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
65289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
65299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6530394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6531394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6532394ed5ebSJunchao Zhang     iremote[k].index = 0;
6533394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
653454c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6535394ed5ebSJunchao Zhang   }
65369566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
65379566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
65389566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
65399566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6540e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6541394ed5ebSJunchao Zhang 
6542394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6543394ed5ebSJunchao Zhang   PetscSF sf2;
6544394ed5ebSJunchao Zhang   nroots  = nroots2;
6545394ed5ebSJunchao Zhang   nleaves = nleaves2;
65469566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65479566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65489566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6549394ed5ebSJunchao Zhang   p = 0;
6550394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
655154c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6552394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6553394ed5ebSJunchao Zhang       iremote[p].rank = sendto[k];
65546497c311SBarry Smith       PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index));
6555394ed5ebSJunchao Zhang     }
6556394ed5ebSJunchao Zhang   }
65579566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6558394ed5ebSJunchao Zhang 
6559394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6560394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6561394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6563834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6564834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6565de0a9f35SPierre Jolivet   PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem);
6566de0a9f35SPierre Jolivet   PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem);
6567834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6568834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6569834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6570834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6571394ed5ebSJunchao Zhang 
65729566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65739566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6574394ed5ebSJunchao Zhang 
6575394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6576394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65779566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6578394ed5ebSJunchao Zhang 
6579651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6580651b1cf9SStefano Zampini   PetscCount *Cperm1;
6581834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6582de0a9f35SPierre Jolivet   PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem);
6583651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6584834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6585651b1cf9SStefano Zampini 
6586651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6587651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6588651b1cf9SStefano Zampini   PetscBool hypre;
658917b874c6SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre));
6590651b1cf9SStefano Zampini   if (hypre) {
6591651b1cf9SStefano Zampini     PetscInt *minj;
6592651b1cf9SStefano Zampini     PetscBT   hasdiag;
6593651b1cf9SStefano Zampini 
6594651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6595651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
65961690c2aeSBarry Smith     for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX;
6597651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6598651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6599651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6600651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6601651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6602651b1cf9SStefano Zampini     }
6603651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6604651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6605651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6606651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6607651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6608651b1cf9SStefano Zampini     }
6609651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6610651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6611651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6612651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6613651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6614651b1cf9SStefano Zampini     }
6615651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6616651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6617651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6618651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6619651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6620651b1cf9SStefano Zampini     }
6621651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6622651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6623651b1cf9SStefano Zampini   }
6624651b1cf9SStefano Zampini 
6625651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6626651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6627651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6628651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6629394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6630394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6631394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6632394ed5ebSJunchao Zhang 
6633651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
66349566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6635651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
66369566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6637394ed5ebSJunchao Zhang 
6638394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6639394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6640394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6641394ed5ebSJunchao Zhang 
66429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66439566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6646394ed5ebSJunchao Zhang 
6647394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6648158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6649158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6650158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6651158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6652394ed5ebSJunchao Zhang 
66539566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66549566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6655158ec288SJunchao Zhang 
6656158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6657158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6658158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6659158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6660158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6661158ec288SJunchao Zhang 
6662158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6663158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6664158ec288SJunchao Zhang 
6665158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6666158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6667158ec288SJunchao Zhang 
6668158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6669158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6670158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6671158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66729566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66739566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6674e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66759566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6676394ed5ebSJunchao Zhang 
6677158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6678158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6679158ec288SJunchao Zhang 
6680394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6681394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6682394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66839566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66849566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66859566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6686394ed5ebSJunchao Zhang     Aj = Aj_new;
6687394ed5ebSJunchao Zhang   }
6688394ed5ebSJunchao Zhang 
6689394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6690394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66919566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66929566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66939566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6694394ed5ebSJunchao Zhang     Bj = Bj_new;
6695394ed5ebSJunchao Zhang   }
6696394ed5ebSJunchao Zhang 
6697cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6698394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6699cbc6b225SStefano Zampini   MatType          rtype;
6700394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6701cf8ba265SJunchao Zhang   PetscObjectState state;
67029566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
67039566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6704394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
67059371c9d4SSatish Balay   if (cstart) {
67069371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
67079371c9d4SSatish Balay   }
6708c508b908SBarry Smith 
67099566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6710c508b908SBarry Smith 
6711c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6712c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
67139566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
67140da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6715c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6716c508b908SBarry Smith 
6717c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6718c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
67199566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
67200da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6721c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6722c508b908SBarry Smith 
67239566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
67245bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6725cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6726462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6727cbc6b225SStefano Zampini 
6728394ed5ebSJunchao Zhang   a          = (Mat_SeqAIJ *)mpiaij->A->data;
6729394ed5ebSJunchao Zhang   b          = (Mat_SeqAIJ *)mpiaij->B->data;
67309f0612e4SBarry Smith   a->free_a  = PETSC_TRUE;
67319f0612e4SBarry Smith   a->free_ij = PETSC_TRUE;
67329f0612e4SBarry Smith   b->free_a  = PETSC_TRUE;
67339f0612e4SBarry Smith   b->free_ij = PETSC_TRUE;
673417b874c6SStefano Zampini   a->maxnz   = a->nz;
673517b874c6SStefano Zampini   b->maxnz   = b->nz;
6736394ed5ebSJunchao Zhang 
6737cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
67389566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
67399566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
67409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
67419566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6742cbc6b225SStefano Zampini 
67432c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
67442c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
67452c4ab24aSJunchao Zhang   coo->n       = coo_n;
67462c4ab24aSJunchao Zhang   coo->sf      = sf2;
67472c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
67482c4ab24aSJunchao Zhang   coo->recvlen = nroots;
67492c4ab24aSJunchao Zhang   coo->Annz    = Annz;
67502c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
67512c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
67522c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
67532c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67542c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67552c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67562c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67572c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67582c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67592c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67602c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67612c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67622c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67632c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67642c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67652c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67662c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67672c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67682c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67692c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67702c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67712c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
67722c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ));
67732c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67742c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6776394ed5ebSJunchao Zhang }
6777394ed5ebSJunchao Zhang 
6778d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6779d71ae5a4SJacob Faibussowitsch {
6780394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6781394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6782394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67832c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67842c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67852c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67862c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67872c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67882c4ab24aSJunchao Zhang   PetscContainer       container;
67892c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6790394ed5ebSJunchao Zhang 
6791394ed5ebSJunchao Zhang   PetscFunctionBegin;
67922c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67932c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67942c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67952c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67962c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67972c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67982c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67992c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
68002c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
68012c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
68022c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
68032c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
68042c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
68052c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
68062c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
68072c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
68082c4ab24aSJunchao Zhang 
68099566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
68109566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6811394ed5ebSJunchao Zhang 
6812394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
68132c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6814394ed5ebSJunchao Zhang 
6815394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
68162c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6817394ed5ebSJunchao Zhang   /* Add local entries to A and B */
68182c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6819da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6820158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6821158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6822394ed5ebSJunchao Zhang   }
68232c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6824158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6825158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6826158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6827394ed5ebSJunchao Zhang   }
68282c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6829394ed5ebSJunchao Zhang 
6830394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
68312c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6832394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6833394ed5ebSJunchao Zhang   }
68342c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6835394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6836394ed5ebSJunchao Zhang   }
68379566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
68389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
68393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6840394ed5ebSJunchao Zhang }
6841394ed5ebSJunchao Zhang 
6842ccd8e176SBarry Smith /*MC
6843ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6844ccd8e176SBarry Smith 
6845ccd8e176SBarry Smith    Options Database Keys:
684611a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6847ccd8e176SBarry Smith 
6848ccd8e176SBarry Smith    Level: beginner
68490cd7f59aSBarry Smith 
68500cd7f59aSBarry Smith    Notes:
68512ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
68520cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
68530cd7f59aSBarry Smith     in the matrix
68540cd7f59aSBarry Smith 
685511a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
685611a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6857ccd8e176SBarry Smith 
68581cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6859ccd8e176SBarry Smith M*/
6860d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6861d71ae5a4SJacob Faibussowitsch {
6862ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6863ccd8e176SBarry Smith   PetscMPIInt size;
6864ccd8e176SBarry Smith 
6865ccd8e176SBarry Smith   PetscFunctionBegin;
68669566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68672205254eSKarl Rupp 
68684dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6869ccd8e176SBarry Smith   B->data       = (void *)b;
6870aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6871ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6872ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6873ccd8e176SBarry Smith   b->size       = size;
68742205254eSKarl Rupp 
68759566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6876ccd8e176SBarry Smith 
6877ccd8e176SBarry Smith   /* build cache for off array entries formed */
68789566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68792205254eSKarl Rupp 
6880ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6881f4259b30SLisandro Dalcin   b->colmap      = NULL;
6882f4259b30SLisandro Dalcin   b->garray      = NULL;
6883ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6884ccd8e176SBarry Smith 
6885ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68860298fd71SBarry Smith   b->lvec  = NULL;
68870298fd71SBarry Smith   b->Mvctx = NULL;
6888ccd8e176SBarry Smith 
6889ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6890f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6891f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6892ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6893ccd8e176SBarry Smith 
6894f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68950298fd71SBarry Smith   b->spptr = NULL;
6896f60c3dc2SHong Zhang 
68979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68989566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68999566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
69009566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
69019566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
69029566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
69039566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
69049566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
69059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
69069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
69073d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
69089566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
69093d0639e7SStefano Zampini #endif
6910d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6911d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6912d5e393b6SSuyash Tandon #endif
69133d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
69149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
69153d0639e7SStefano Zampini #endif
69169779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
69179566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6918191b95cbSRichard Tran Mills #endif
69199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
69209566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
69219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
69229566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
69235d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
69249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
69255d7652ecSHong Zhang #endif
6926d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
69279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6928d24d4204SJose E. Roman #endif
69299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
69309566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
69313dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
69329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
69339566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
69343dad0653Sstefano_zampini #endif
69359566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
69369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
69379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
69389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
69399566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
69403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6941ccd8e176SBarry Smith }
694281824310SBarry Smith 
69435d83a8b1SBarry Smith /*@
694411a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
694503bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
694603bfb495SBarry Smith 
6947d083f849SBarry Smith   Collective
694803bfb495SBarry Smith 
694903bfb495SBarry Smith   Input Parameters:
695003bfb495SBarry Smith + comm - MPI communicator
695111a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
695203bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6953d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
69542ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
69552ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69562ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6957483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
695804ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
695903bfb495SBarry Smith . a    - matrix values
6960483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69612ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
696203bfb495SBarry Smith - oa   - matrix values
696303bfb495SBarry Smith 
696403bfb495SBarry Smith   Output Parameter:
696503bfb495SBarry Smith . mat - the matrix
696603bfb495SBarry Smith 
696703bfb495SBarry Smith   Level: advanced
696803bfb495SBarry Smith 
696903bfb495SBarry Smith   Notes:
6970f13dfd9eSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user
6971292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
697203bfb495SBarry Smith 
69732ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
697403bfb495SBarry Smith 
69752ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
697603bfb495SBarry Smith 
69777b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69787b55108eSBarry Smith 
6979dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6980dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6981dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6982dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
698311a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6984dca341c0SJed Brown   communication if it is known that only local entries will be set.
698503bfb495SBarry Smith 
69861cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6987db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69882b26979fSBarry Smith @*/
6989d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6990d71ae5a4SJacob Faibussowitsch {
699103bfb495SBarry Smith   Mat_MPIAIJ *maij;
699203bfb495SBarry Smith 
699303bfb495SBarry Smith   PetscFunctionBegin;
699408401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6995aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6996aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69979566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69989566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69999566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
700003bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
70012205254eSKarl Rupp 
70028d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
700303bfb495SBarry Smith 
70049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
70059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
700603bfb495SBarry Smith 
70079566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
70089566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
700903bfb495SBarry Smith 
70109566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
70119566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
70129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
70139566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
70149566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
70153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
701603bfb495SBarry Smith }
701703bfb495SBarry Smith 
70184e84afc0SStefano Zampini typedef struct {
70194e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
70204e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
70214e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
70224e84afc0SStefano Zampini 
70234e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
70244e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
70254e84afc0SStefano Zampini   PetscScalar *bufa;
70264e84afc0SStefano Zampini   Mat          P_oth;
70274e84afc0SStefano Zampini 
70284e84afc0SStefano Zampini   /* may take advantage of merging product->B */
7029ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
70304e84afc0SStefano Zampini 
7031ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
70324e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
70334e84afc0SStefano Zampini      of the temporary storage */
70344e84afc0SStefano Zampini   PetscBool reusesym;
70354e84afc0SStefano Zampini 
70364e84afc0SStefano Zampini   /* support for COO values insertion */
7037ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
7038ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
7039ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
7040ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
7041c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
7042c215019aSStefano Zampini   PetscMemType mtype;
70434e84afc0SStefano Zampini 
70444e84afc0SStefano Zampini   /* customization */
70454e84afc0SStefano Zampini   PetscBool abmerge;
7046abb89eb1SStefano Zampini   PetscBool P_oth_bind;
70474e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
70484e84afc0SStefano Zampini 
7049ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
7050d71ae5a4SJacob Faibussowitsch {
70514e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
70524e84afc0SStefano Zampini   PetscInt             i;
70534e84afc0SStefano Zampini 
70544e84afc0SStefano Zampini   PetscFunctionBegin;
70559566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70569566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70579566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70589566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70599566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70609566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70619566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
706248a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70639566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70649566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70659566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70669566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70679566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70689566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70704e84afc0SStefano Zampini }
70714e84afc0SStefano Zampini 
7072fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7073fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7074fff043a9SJunchao Zhang  */
7075d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7076d71ae5a4SJacob Faibussowitsch {
7077c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7078c215019aSStefano Zampini 
7079c215019aSStefano Zampini   PetscFunctionBegin;
70809566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7081c215019aSStefano Zampini   if (f) {
70829566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7083c215019aSStefano Zampini   } else {
7084c215019aSStefano Zampini     const PetscScalar *vv;
7085c215019aSStefano Zampini 
70869566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7087c215019aSStefano Zampini     if (n && idx) {
7088c215019aSStefano Zampini       PetscScalar    *w  = v;
7089c215019aSStefano Zampini       const PetscInt *oi = idx;
7090c215019aSStefano Zampini       PetscInt        j;
7091c215019aSStefano Zampini 
7092c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7093c215019aSStefano Zampini     } else {
70949566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7095c215019aSStefano Zampini     }
70969566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7097c215019aSStefano Zampini   }
70983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7099c215019aSStefano Zampini }
7100c215019aSStefano Zampini 
7101d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7102d71ae5a4SJacob Faibussowitsch {
71034e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
71044e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
71054e84afc0SStefano Zampini 
71064e84afc0SStefano Zampini   PetscFunctionBegin;
71074e84afc0SStefano Zampini   MatCheckProduct(C, 1);
710828b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
71094e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
71104e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
711148a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
711248a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
71134e84afc0SStefano Zampini   }
71144e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7115abb89eb1SStefano Zampini 
7116abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
711708401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
71189566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7119abb89eb1SStefano Zampini   }
71204e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
71216497c311SBarry Smith     PetscInt noff;
71224e84afc0SStefano Zampini 
71236497c311SBarry Smith     PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff));
71244e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
71254e84afc0SStefano Zampini     if (noff) {
71266497c311SBarry Smith       PetscInt nown;
7127c215019aSStefano Zampini 
71286497c311SBarry Smith       PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown));
71299566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
71309566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
71314e84afc0SStefano Zampini       n_o += noff;
71324e84afc0SStefano Zampini       n_d += nown;
71334e84afc0SStefano Zampini     } else {
7134c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7135c215019aSStefano Zampini 
71369566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
71374e84afc0SStefano Zampini       n_d += mm->nz;
71384e84afc0SStefano Zampini     }
71394e84afc0SStefano Zampini   }
7140c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
71419566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71429566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71434e84afc0SStefano Zampini   }
71449566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
71453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71464e84afc0SStefano Zampini }
71474e84afc0SStefano Zampini 
71484e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
71494e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7150d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7151d71ae5a4SJacob Faibussowitsch {
71524e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7153ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71544e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71554e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71564e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71574e84afc0SStefano Zampini   IS                     glob      = NULL;
71584e84afc0SStefano Zampini   const char            *prefix;
71594e84afc0SStefano Zampini   char                   pprefix[256];
71604e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
716182a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
716282a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7163ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7164ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7165ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7166ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7167ddea5d60SJunchao Zhang 
71684e84afc0SStefano Zampini   MatProductType ptype;
7169d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71704e84afc0SStefano Zampini   PetscMPIInt    size;
71714e84afc0SStefano Zampini 
71724e84afc0SStefano Zampini   PetscFunctionBegin;
71734e84afc0SStefano Zampini   MatCheckProduct(C, 1);
717428b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71754e84afc0SStefano Zampini   ptype = product->type;
7176b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7177fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7178fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7179fa046f9fSJunchao Zhang   }
71804e84afc0SStefano Zampini   switch (ptype) {
71814e84afc0SStefano Zampini   case MATPRODUCT_AB:
71824e84afc0SStefano Zampini     A          = product->A;
71834e84afc0SStefano Zampini     P          = product->B;
71844e84afc0SStefano Zampini     m          = A->rmap->n;
71854e84afc0SStefano Zampini     n          = P->cmap->n;
71864e84afc0SStefano Zampini     M          = A->rmap->N;
71874e84afc0SStefano Zampini     N          = P->cmap->N;
7188ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71894e84afc0SStefano Zampini     break;
71904e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71914e84afc0SStefano Zampini     P          = product->A;
71924e84afc0SStefano Zampini     A          = product->B;
71934e84afc0SStefano Zampini     m          = P->cmap->n;
71944e84afc0SStefano Zampini     n          = A->cmap->n;
71954e84afc0SStefano Zampini     M          = P->cmap->N;
71964e84afc0SStefano Zampini     N          = A->cmap->N;
71974e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71984e84afc0SStefano Zampini     break;
71994e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
72004e84afc0SStefano Zampini     A          = product->A;
72014e84afc0SStefano Zampini     P          = product->B;
72024e84afc0SStefano Zampini     m          = P->cmap->n;
72034e84afc0SStefano Zampini     n          = P->cmap->n;
72044e84afc0SStefano Zampini     M          = P->cmap->N;
72054e84afc0SStefano Zampini     N          = P->cmap->N;
72064e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
72074e84afc0SStefano Zampini     break;
7208d71ae5a4SJacob Faibussowitsch   default:
7209d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
72104e84afc0SStefano Zampini   }
72119566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
72124e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
72134e84afc0SStefano Zampini 
72144e84afc0SStefano Zampini   /* defaults */
72154e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
72164e84afc0SStefano Zampini     mp[i]    = NULL;
72174e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
72184e84afc0SStefano Zampini     rmapt[i] = -1;
72194e84afc0SStefano Zampini     cmapt[i] = -1;
72204e84afc0SStefano Zampini     rmapa[i] = NULL;
72214e84afc0SStefano Zampini     cmapa[i] = NULL;
72224e84afc0SStefano Zampini   }
72234e84afc0SStefano Zampini 
72244e84afc0SStefano Zampini   /* customization */
72259566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
72264e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
72274e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
72284e84afc0SStefano Zampini     if (product->api_user) {
7229d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
72309566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72319566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7232d0609cedSBarry Smith       PetscOptionsEnd();
72334e84afc0SStefano Zampini     } else {
7234d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
72359566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72369566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7237d0609cedSBarry Smith       PetscOptionsEnd();
7238abb89eb1SStefano Zampini     }
7239abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7240abb89eb1SStefano Zampini     if (product->api_user) {
7241d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
72429566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7243d0609cedSBarry Smith       PetscOptionsEnd();
7244abb89eb1SStefano Zampini     } else {
7245d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
72469566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7247d0609cedSBarry Smith       PetscOptionsEnd();
72484e84afc0SStefano Zampini     }
72494e84afc0SStefano Zampini   }
72504e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
72514e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
72529566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72539566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72549566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72559566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72569566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7257ddea5d60SJunchao Zhang 
7258ddea5d60SJunchao Zhang   cp = 0;
72594e84afc0SStefano Zampini   switch (ptype) {
72604e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72619566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72624e84afc0SStefano Zampini 
7263ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7264ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72654e84afc0SStefano Zampini       /* P is product->B */
72669566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72679566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72689566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72699566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72709566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72719566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72729566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72734e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72749566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72759566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72769566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72774e84afc0SStefano Zampini       rmapt[cp] = 1;
72784e84afc0SStefano Zampini       cmapt[cp] = 2;
72794e84afc0SStefano Zampini       cmapa[cp] = globidx;
72804e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72814e84afc0SStefano Zampini       cp++;
7282ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72839566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72849566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72859566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72869566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72879566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72889566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72894e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72909566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72919566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72924e84afc0SStefano Zampini       rmapt[cp] = 1;
72934e84afc0SStefano Zampini       cmapt[cp] = 1;
72944e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72954e84afc0SStefano Zampini       cp++;
72969566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72979566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72989566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72999566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73009566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73019566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73024e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73039566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73049566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73054e84afc0SStefano Zampini       rmapt[cp] = 1;
73064e84afc0SStefano Zampini       cmapt[cp] = 2;
73074e84afc0SStefano Zampini       cmapa[cp] = p->garray;
73084e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73094e84afc0SStefano Zampini       cp++;
73104e84afc0SStefano Zampini     }
7311ddea5d60SJunchao Zhang 
7312ddea5d60SJunchao Zhang     /* A_off * P_other */
73134e84afc0SStefano Zampini     if (mmdata->P_oth) {
73149566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
73159566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7316f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73179566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73189566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73199566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73209566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73219566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73229566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73239566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73244e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73259566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73269566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73274e84afc0SStefano Zampini       rmapt[cp] = 1;
73284e84afc0SStefano Zampini       cmapt[cp] = 2;
73294e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73304e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73314e84afc0SStefano Zampini       cp++;
73324e84afc0SStefano Zampini     }
73334e84afc0SStefano Zampini     break;
7334ddea5d60SJunchao Zhang 
73354e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
73364e84afc0SStefano Zampini     /* A is product->B */
73379566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7338ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
73399566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
73409566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73419566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73429566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73439566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73449566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73454e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73469566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73479566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73489566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73494e84afc0SStefano Zampini       rmapt[cp] = 2;
73504e84afc0SStefano Zampini       rmapa[cp] = globidx;
73514e84afc0SStefano Zampini       cmapt[cp] = 2;
73524e84afc0SStefano Zampini       cmapa[cp] = globidx;
73534e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73544e84afc0SStefano Zampini       cp++;
73554e84afc0SStefano Zampini     } else {
73569566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73579566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73589566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73599566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73609566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73619566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73624e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73639566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73649566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73659566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73664e84afc0SStefano Zampini       rmapt[cp] = 1;
73674e84afc0SStefano Zampini       cmapt[cp] = 2;
73684e84afc0SStefano Zampini       cmapa[cp] = globidx;
73694e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73704e84afc0SStefano Zampini       cp++;
73719566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73729566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73739566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73749566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73759566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73769566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73774e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73789566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73799566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73804e84afc0SStefano Zampini       rmapt[cp] = 2;
73814e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73824e84afc0SStefano Zampini       cmapt[cp] = 2;
73834e84afc0SStefano Zampini       cmapa[cp] = globidx;
73844e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73854e84afc0SStefano Zampini       cp++;
73864e84afc0SStefano Zampini     }
73874e84afc0SStefano Zampini     break;
73884e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73899566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73904e84afc0SStefano Zampini     /* P is product->B */
73919566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73929566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73939566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73949566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73959566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73969566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73979566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73984e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73999566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
74009566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74019566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
74024e84afc0SStefano Zampini     rmapt[cp] = 2;
74034e84afc0SStefano Zampini     rmapa[cp] = globidx;
74044e84afc0SStefano Zampini     cmapt[cp] = 2;
74054e84afc0SStefano Zampini     cmapa[cp] = globidx;
74064e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
74074e84afc0SStefano Zampini     cp++;
74084e84afc0SStefano Zampini     if (mmdata->P_oth) {
74099566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
74109566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7411f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
74129566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
74139566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
74149566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
74159566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74169566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74179566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74189566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74194e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74209566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74219566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74224e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
74234e84afc0SStefano Zampini       cp++;
74249566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
74259566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
74269566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74279566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74289566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74299566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74304e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74319566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74329566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74334e84afc0SStefano Zampini       rmapt[cp] = 2;
74344e84afc0SStefano Zampini       rmapa[cp] = globidx;
74354e84afc0SStefano Zampini       cmapt[cp] = 2;
74364e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
74374e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74384e84afc0SStefano Zampini       cp++;
74394e84afc0SStefano Zampini     }
74404e84afc0SStefano Zampini     break;
7441d71ae5a4SJacob Faibussowitsch   default:
7442d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
74434e84afc0SStefano Zampini   }
74444e84afc0SStefano Zampini   /* sanity check */
74459371c9d4SSatish Balay   if (size > 1)
74469371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
74474e84afc0SStefano Zampini 
74489566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7449ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7450ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7451ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7452ddea5d60SJunchao Zhang   }
74534e84afc0SStefano Zampini   mmdata->cp             = cp;
74544e84afc0SStefano Zampini   C->product->data       = mmdata;
74554e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74564e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74574e84afc0SStefano Zampini 
7458c215019aSStefano Zampini   /* memory type */
7459c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74609566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7461d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74629566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7463c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7464d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74653214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7466c215019aSStefano Zampini 
74674e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7468ddea5d60SJunchao Zhang 
7469ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7470ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7471ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7472ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7473ddea5d60SJunchao Zhang   */
74744e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74754e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74764e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7477ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74784e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74794e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74804e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74814e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74824e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74834e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74844e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74854e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7486ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7487ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74884e84afc0SStefano Zampini       }
74894e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74904e84afc0SStefano Zampini   }
7491ddea5d60SJunchao Zhang 
7492ddea5d60SJunchao Zhang   /*
7493ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7494ddea5d60SJunchao Zhang 
7495ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7496ddea5d60SJunchao Zhang 
7497d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7498ddea5d60SJunchao Zhang 
7499ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7500ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7501ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7502ddea5d60SJunchao Zhang 
7503ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7504da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7505ddea5d60SJunchao Zhang   */
75069566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
75079566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7508ddea5d60SJunchao Zhang 
7509ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7510ddea5d60SJunchao Zhang   if (hasoffproc) {
75114e84afc0SStefano Zampini     PetscSF  msf;
75124e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
75134e84afc0SStefano Zampini 
75149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
75159566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
75169566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7517ddea5d60SJunchao Zhang 
75184e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
75194e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
75204e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
75214e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7522ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
75234e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
75244e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
75254e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
75264e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
75274e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
75284e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
75294e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
75304e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
75314e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
75324e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
75334e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
75344e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
75354e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7536ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
75374e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
75384e84afc0SStefano Zampini               *coi++    = gr;
75394e84afc0SStefano Zampini               *idxoff++ = j;
75404e84afc0SStefano Zampini             }
75414e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
75424e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
75434e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75444e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
75454e84afc0SStefano Zampini             } else { /* offdiag */
75464e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75474e84afc0SStefano Zampini             }
75484e84afc0SStefano Zampini             ncoo_o += nz;
7549ddea5d60SJunchao Zhang           } else { /* this is a local row */
75504e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
75514e84afc0SStefano Zampini           }
75524e84afc0SStefano Zampini         }
75534e84afc0SStefano Zampini       }
75544e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75554e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75564e84afc0SStefano Zampini     }
75574e84afc0SStefano Zampini 
75589566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75596497c311SBarry Smith     PetscInt incoo_o;
75606497c311SBarry Smith     PetscCall(PetscIntCast(ncoo_o, &incoo_o));
75616497c311SBarry Smith     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75629566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75639566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75644e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75659566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75669566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75679566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75689566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75699566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75709566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7571ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75729566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75734e84afc0SStefano Zampini     coo_i = coo_i2;
75744e84afc0SStefano Zampini     coo_j = coo_j2;
75754e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75764e84afc0SStefano Zampini     ncoo = ncoo_d;
75779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7578c215019aSStefano Zampini 
75799566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75809566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75819566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75824e84afc0SStefano Zampini   }
7583c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75844e84afc0SStefano Zampini 
7585ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75864e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75874e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75884e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75894e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75904e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75914e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75924e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75934e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75944e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75954e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75964e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75974e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75984e84afc0SStefano Zampini 
75994e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7600ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7601ddea5d60SJunchao Zhang       /* fill coo_i */
76024e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76034e84afc0SStefano Zampini         const PetscInt gr = i + rs;
76044e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
76054e84afc0SStefano Zampini       }
7606ddea5d60SJunchao Zhang       /* fill coo_j */
7607ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
76089566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7609ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7610ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7611ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
76124e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
76134e84afc0SStefano Zampini       }
76144e84afc0SStefano Zampini       ncoo_d += mm->nz;
7615ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
76164e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76174e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
76184e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
76194e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7620ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
76214e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7622ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
76234e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
76244e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
76254e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7626ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
76274e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
76284e84afc0SStefano Zampini           }
76294e84afc0SStefano Zampini           ncoo_d += nz;
76304e84afc0SStefano Zampini         }
76314e84afc0SStefano Zampini       }
76324e84afc0SStefano Zampini     }
76334e84afc0SStefano Zampini   }
763448a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
76359566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
763648a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
76379566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7638ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
76399566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
76404e84afc0SStefano Zampini 
76414e84afc0SStefano Zampini   /* preallocate with COO data */
76429566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76439566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76454e84afc0SStefano Zampini }
76464e84afc0SStefano Zampini 
7647d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7648d71ae5a4SJacob Faibussowitsch {
76494e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76504e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76514e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7652abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76534e84afc0SStefano Zampini #else
76544e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76554e84afc0SStefano Zampini #endif
76564e84afc0SStefano Zampini 
76574e84afc0SStefano Zampini   PetscFunctionBegin;
76584e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76594e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
766048a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
766165e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7662abb89eb1SStefano Zampini     switch (product->type) {
7663abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7664abb89eb1SStefano Zampini       if (product->api_user) {
7665d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76669566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7667d0609cedSBarry Smith         PetscOptionsEnd();
7668abb89eb1SStefano Zampini       } else {
7669d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76709566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7671d0609cedSBarry Smith         PetscOptionsEnd();
7672abb89eb1SStefano Zampini       }
7673abb89eb1SStefano Zampini       break;
7674abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7675abb89eb1SStefano Zampini       if (product->api_user) {
7676d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76779566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7678d0609cedSBarry Smith         PetscOptionsEnd();
7679abb89eb1SStefano Zampini       } else {
7680d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76819566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7682d0609cedSBarry Smith         PetscOptionsEnd();
7683abb89eb1SStefano Zampini       }
7684abb89eb1SStefano Zampini       break;
7685abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7686abb89eb1SStefano Zampini       if (product->api_user) {
7687d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76889566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7689d0609cedSBarry Smith         PetscOptionsEnd();
7690abb89eb1SStefano Zampini       } else {
7691d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76929566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7693d0609cedSBarry Smith         PetscOptionsEnd();
7694abb89eb1SStefano Zampini       }
7695abb89eb1SStefano Zampini       break;
7696d71ae5a4SJacob Faibussowitsch     default:
7697d71ae5a4SJacob Faibussowitsch       break;
7698abb89eb1SStefano Zampini     }
7699abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7700abb89eb1SStefano Zampini   }
77014e84afc0SStefano Zampini #endif
77024e84afc0SStefano Zampini   if (match) {
77034e84afc0SStefano Zampini     switch (product->type) {
77044e84afc0SStefano Zampini     case MATPRODUCT_AB:
77054e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7706d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7707d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7708d71ae5a4SJacob Faibussowitsch       break;
7709d71ae5a4SJacob Faibussowitsch     default:
7710d71ae5a4SJacob Faibussowitsch       break;
77114e84afc0SStefano Zampini     }
77124e84afc0SStefano Zampini   }
77134e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
77149566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
77153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771681824310SBarry Smith }
771798921bdaSJacob Faibussowitsch 
771898921bdaSJacob Faibussowitsch /*
771972833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
772072833a62Smarkadams4 
772172833a62Smarkadams4    n - the number of block indices in cc[]
772272833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
772372833a62Smarkadams4 */
7724d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7725d71ae5a4SJacob Faibussowitsch {
772672833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
772772833a62Smarkadams4   const PetscInt *idx;
772872833a62Smarkadams4 
772972833a62Smarkadams4   PetscFunctionBegin;
773072833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
773172833a62Smarkadams4   if (nidx) {
773272833a62Smarkadams4     cnt     = 0;
773372833a62Smarkadams4     cc[cnt] = idx[0] / bs;
773472833a62Smarkadams4     for (j = 1; j < nidx; j++) {
773572833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
773672833a62Smarkadams4     }
773772833a62Smarkadams4   }
773872833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
773972833a62Smarkadams4   *n = cnt + 1;
77403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
774172833a62Smarkadams4 }
774272833a62Smarkadams4 
774372833a62Smarkadams4 /*
774472833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
774572833a62Smarkadams4 
774672833a62Smarkadams4     ncollapsed - the number of block indices
774772833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
774872833a62Smarkadams4 */
7749d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7750d71ae5a4SJacob Faibussowitsch {
775172833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
775272833a62Smarkadams4 
775372833a62Smarkadams4   PetscFunctionBegin;
775472833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
775572833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
775672833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
775772833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77589371c9d4SSatish Balay     cprevtmp = cprev;
77599371c9d4SSatish Balay     cprev    = merged;
77609371c9d4SSatish Balay     merged   = cprevtmp;
776172833a62Smarkadams4   }
776272833a62Smarkadams4   *ncollapsed = nprev;
776372833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
776572833a62Smarkadams4 }
776672833a62Smarkadams4 
77672d776b49SBarry Smith /*
776872833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
776972833a62Smarkadams4 
777072833a62Smarkadams4  Input Parameter:
777172833a62Smarkadams4  . Amat - matrix
777272833a62Smarkadams4  - symmetrize - make the result symmetric
777372833a62Smarkadams4  + scale - scale with diagonal
777472833a62Smarkadams4 
777572833a62Smarkadams4  Output Parameter:
777672833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
777772833a62Smarkadams4 
777872833a62Smarkadams4 */
7779e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7780d71ae5a4SJacob Faibussowitsch {
778172833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
778272833a62Smarkadams4   MPI_Comm  comm;
778372833a62Smarkadams4   Mat       Gmat;
778472833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
778572833a62Smarkadams4   Mat       a, b, c;
778672833a62Smarkadams4   MatType   jtype;
778772833a62Smarkadams4 
778872833a62Smarkadams4   PetscFunctionBegin;
778972833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
779072833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
779172833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
779272833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
779372833a62Smarkadams4   nloc = (Iend - Istart) / bs;
779472833a62Smarkadams4 
779572833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
779672833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
779772833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
779872833a62Smarkadams4 
779972833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
780072833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
780172833a62Smarkadams4      implementation */
780272833a62Smarkadams4   if (bs > 1) {
780372833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
780472833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
780572833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
780672833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
780772833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
780872833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
780972833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
78102cf69117Smarkadams4       MatScalar *aa, val, *AA;
78112cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
78126497c311SBarry Smith 
78139371c9d4SSatish Balay       if (isseqaij) {
78149371c9d4SSatish Balay         a = Amat;
78159371c9d4SSatish Balay         b = NULL;
78169371c9d4SSatish Balay       } else {
781772833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
78189371c9d4SSatish Balay         a             = d->A;
78199371c9d4SSatish Balay         b             = d->B;
782072833a62Smarkadams4       }
782172833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
782232603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
782372833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
78242cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
782559ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
78266497c311SBarry Smith 
782759ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
782859ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
782959ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
783059ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
783172833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
783259ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
783359ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
783459ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
783559ee9f9fSPierre Jolivet             else {
783659ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
783759ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
783859ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
783972833a62Smarkadams4               }
784059ee9f9fSPierre Jolivet             }
784159ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
784259ee9f9fSPierre Jolivet           }
784359ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
784472833a62Smarkadams4           if (!ok) {
784572833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
784659ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
784772833a62Smarkadams4             goto old_bs;
784872833a62Smarkadams4           }
784972833a62Smarkadams4         }
785072833a62Smarkadams4       }
785172833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
785272833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
785372833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78542cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
785572833a62Smarkadams4       // diag
785672833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
785772833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
78586497c311SBarry Smith 
785972833a62Smarkadams4         ai = aseq->i;
786072833a62Smarkadams4         n  = ai[brow + 1] - ai[brow];
786172833a62Smarkadams4         aj = aseq->j + ai[brow];
78626497c311SBarry Smith         for (PetscInt k = 0; k < n; k += bs) {   // block columns
786372833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
786472833a62Smarkadams4           val        = 0;
7865e02fb3cdSMark Adams           if (index_size == 0) {
78666497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
786772833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
78686497c311SBarry Smith               for (PetscInt jj = 0; jj < bs; jj++) {    // columns in block
786972833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
787072833a62Smarkadams4               }
787172833a62Smarkadams4             }
7872e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78736497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78746497c311SBarry Smith               PetscInt ii = index[iii];
7875e02fb3cdSMark Adams               aa          = aseq->a + ai[brow + ii] + k;
78766497c311SBarry Smith               for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block
78776497c311SBarry Smith                 PetscInt jj = index[jjj];
7878cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7879e02fb3cdSMark Adams               }
7880e02fb3cdSMark Adams             }
7881e02fb3cdSMark Adams           }
788259ee9f9fSPierre Jolivet           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
788372833a62Smarkadams4           AA[k / bs] = val;
788472833a62Smarkadams4         }
788572833a62Smarkadams4         grow = Istart / bs + brow / bs;
788666521e1fSMark Adams         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES));
788772833a62Smarkadams4       }
788872833a62Smarkadams4       // off-diag
788972833a62Smarkadams4       if (ismpiaij) {
789072833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
789172833a62Smarkadams4         const PetscScalar *vals;
789272833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
78936497c311SBarry Smith 
789472833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
789572833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
789672833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
78976497c311SBarry Smith           for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
789859ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
789972833a62Smarkadams4             AA[k / bs] = 0;
790072833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
790172833a62Smarkadams4           }
790272833a62Smarkadams4           nc = ncols / bs;
790372833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7904e02fb3cdSMark Adams           if (index_size == 0) {
79056497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
790672833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
79076497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
79086497c311SBarry Smith                 for (PetscInt jj = 0; jj < bs; jj++) { // cols in block
790959ee9f9fSPierre Jolivet                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
791072833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
791172833a62Smarkadams4                 }
791272833a62Smarkadams4               }
791372833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
791472833a62Smarkadams4             }
7915e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
79166497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
79176497c311SBarry Smith               PetscInt ii = index[iii];
7918e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
79196497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
79206497c311SBarry Smith                 for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block
79216497c311SBarry Smith                   PetscInt jj = index[jjj];
7922e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7923e02fb3cdSMark Adams                 }
7924e02fb3cdSMark Adams               }
7925e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7926e02fb3cdSMark Adams             }
7927e02fb3cdSMark Adams           }
792872833a62Smarkadams4           grow = Istart / bs + brow / bs;
792966521e1fSMark Adams           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES));
793072833a62Smarkadams4         }
793172833a62Smarkadams4       }
793272833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
793372833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79342cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
793572833a62Smarkadams4     } else {
793672833a62Smarkadams4       const PetscScalar *vals;
793772833a62Smarkadams4       const PetscInt    *idx;
793872833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
793972833a62Smarkadams4     old_bs:
794072833a62Smarkadams4       /*
794172833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
794272833a62Smarkadams4        */
794372833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
794432603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
794572833a62Smarkadams4       if (isseqaij) {
794672833a62Smarkadams4         PetscInt max_d_nnz;
79476497c311SBarry Smith 
794872833a62Smarkadams4         /*
794972833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
795072833a62Smarkadams4          */
795172833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
795272833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
795372833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
795448a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
795572833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
795672833a62Smarkadams4       } else if (ismpiaij) {
795772833a62Smarkadams4         Mat             Daij, Oaij;
795872833a62Smarkadams4         const PetscInt *garray;
795972833a62Smarkadams4         PetscInt        max_d_nnz;
79606497c311SBarry Smith 
796172833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
796272833a62Smarkadams4         /*
796372833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
796472833a62Smarkadams4          */
796572833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
796672833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
796772833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
796848a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
796972833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
797072833a62Smarkadams4         /*
797172833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
797272833a62Smarkadams4          */
797372833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
797472833a62Smarkadams4           o_nnz[jj] = 0;
797572833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
797672833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
797772833a62Smarkadams4             o_nnz[jj] += ncols;
797872833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
797972833a62Smarkadams4           }
798072833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
798172833a62Smarkadams4         }
798272833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
798372833a62Smarkadams4       /* get scalar copy (norms) of matrix */
798472833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
798572833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
798672833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
798772833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
798872833a62Smarkadams4         PetscInt dest_row = Ii / bs;
79896497c311SBarry Smith 
799072833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
799172833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
799272833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
799372833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
79946497c311SBarry Smith 
799572833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
799672833a62Smarkadams4         }
799772833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
799872833a62Smarkadams4       }
799972833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
800072833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
800172833a62Smarkadams4     }
800272833a62Smarkadams4   } else {
80032d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
80042d776b49SBarry Smith     else {
80052d776b49SBarry Smith       Gmat = Amat;
80062d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
80072d776b49SBarry Smith     }
80089371c9d4SSatish Balay     if (isseqaij) {
80099371c9d4SSatish Balay       a = Gmat;
80109371c9d4SSatish Balay       b = NULL;
80119371c9d4SSatish Balay     } else {
801272833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
80139371c9d4SSatish Balay       a             = d->A;
80149371c9d4SSatish Balay       b             = d->B;
801572833a62Smarkadams4     }
80162d776b49SBarry Smith     if (filter >= 0 || scale) {
80172d776b49SBarry Smith       /* take absolute value of each entry */
801872833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
801972833a62Smarkadams4         MatInfo      info;
802072833a62Smarkadams4         PetscScalar *avals;
80216497c311SBarry Smith 
802272833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
802372833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
802472833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
802572833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
802672833a62Smarkadams4       }
802772833a62Smarkadams4     }
80282d776b49SBarry Smith   }
802972833a62Smarkadams4   if (symmetrize) {
8030b94d7dedSBarry Smith     PetscBool isset, issym;
80316497c311SBarry Smith 
8032b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8033b94d7dedSBarry Smith     if (!isset || !issym) {
803472833a62Smarkadams4       Mat matTrans;
80356497c311SBarry Smith 
803672833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80371fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
803872833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
803972833a62Smarkadams4     }
804072833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80412d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
804272833a62Smarkadams4   if (scale) {
804372833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
804472833a62Smarkadams4     Vec diag;
80456497c311SBarry Smith 
804672833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
804772833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
804872833a62Smarkadams4     PetscCall(VecReciprocal(diag));
804972833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
805072833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
805172833a62Smarkadams4     PetscCall(VecDestroy(&diag));
805272833a62Smarkadams4   }
805372833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80542d776b49SBarry Smith   if (filter >= 0) {
80552ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80562ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80572d776b49SBarry Smith   }
805872833a62Smarkadams4   *a_Gmat = Gmat;
80593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
806072833a62Smarkadams4 }
806172833a62Smarkadams4 
806272833a62Smarkadams4 /*
806398921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
806498921bdaSJacob Faibussowitsch */
806598921bdaSJacob Faibussowitsch 
806698921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80679566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80689566063dSJacob Faibussowitsch #undef PetscCall
80699371c9d4SSatish Balay #define PetscCall(...) \
80709371c9d4SSatish Balay   do { \
80715f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
807298921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
807398921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
807498921bdaSJacob Faibussowitsch       return; \
807598921bdaSJacob Faibussowitsch     } \
807698921bdaSJacob Faibussowitsch   } while (0)
807798921bdaSJacob Faibussowitsch 
807898921bdaSJacob Faibussowitsch #undef SETERRQ
80799371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80809371c9d4SSatish Balay   do { \
808198921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
808298921bdaSJacob Faibussowitsch     return; \
808398921bdaSJacob Faibussowitsch   } while (0)
808498921bdaSJacob Faibussowitsch 
808598921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
808698921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
808798921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
808898921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
808998921bdaSJacob Faibussowitsch #else
809098921bdaSJacob Faibussowitsch #endif
8091d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8092d71ae5a4SJacob Faibussowitsch {
809398921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
809498921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
809598921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
809698921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
809798921bdaSJacob Faibussowitsch   PetscScalar value;
809898921bdaSJacob Faibussowitsch 
809998921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
810098921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
81015f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
810298921bdaSJacob Faibussowitsch   {
810398921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
810498921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
810598921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
810698921bdaSJacob Faibussowitsch 
810798921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
810898921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
810998921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
811098921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
811198921bdaSJacob Faibussowitsch     MatScalar  *aa;
8112f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
811398921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
811498921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
811598921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
811698921bdaSJacob Faibussowitsch     MatScalar  *ba;
811798921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
811898921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
811998921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
812098921bdaSJacob Faibussowitsch 
812198921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
812298921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
812398921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
812498921bdaSJacob Faibussowitsch 
812598921bdaSJacob Faibussowitsch     PetscFunctionBegin;
81269566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
81279566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
812898921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
812998921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81306bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
813198921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
813298921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
813398921bdaSJacob Faibussowitsch         lastcol1 = -1;
813498921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
813598921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
813698921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
813798921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
813898921bdaSJacob Faibussowitsch         low1     = 0;
813998921bdaSJacob Faibussowitsch         high1    = nrow1;
814098921bdaSJacob Faibussowitsch         lastcol2 = -1;
814198921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
814298921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
814398921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
814498921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
814598921bdaSJacob Faibussowitsch         low2     = 0;
814698921bdaSJacob Faibussowitsch         high2    = nrow2;
814798921bdaSJacob Faibussowitsch 
814898921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
814998921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
815098921bdaSJacob Faibussowitsch           else value = v[i + j * m];
815198921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
815298921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
815398921bdaSJacob Faibussowitsch             col = in[j] - cstart;
815498921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
815598921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
815698921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
815763a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
815898921bdaSJacob Faibussowitsch           } else {
815998921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
816048a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
816198921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8162eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
816398921bdaSJacob Faibussowitsch               col--;
816498921bdaSJacob Faibussowitsch #else
816598921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
816698921bdaSJacob Faibussowitsch #endif
8167f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
8168eb14dd14SAlex Lindsay                 PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
816998921bdaSJacob Faibussowitsch                 col = in[j];
817098921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
817198921bdaSJacob Faibussowitsch                 B        = aij->B;
817298921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81739371c9d4SSatish Balay                 bimax    = b->imax;
81749371c9d4SSatish Balay                 bi       = b->i;
81759371c9d4SSatish Balay                 bilen    = b->ilen;
81769371c9d4SSatish Balay                 bj       = b->j;
817798921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
817898921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
817998921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
818098921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
818198921bdaSJacob Faibussowitsch                 low2     = 0;
818298921bdaSJacob Faibussowitsch                 high2    = nrow2;
818398921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
818498921bdaSJacob Faibussowitsch                 ba       = b->a;
818598921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
818698921bdaSJacob Faibussowitsch               }
818798921bdaSJacob Faibussowitsch             } else col = in[j];
818898921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
818998921bdaSJacob Faibussowitsch           }
819098921bdaSJacob Faibussowitsch         }
819198921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
819298921bdaSJacob Faibussowitsch         if (roworiented) {
81939566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
819498921bdaSJacob Faibussowitsch         } else {
81959566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
819698921bdaSJacob Faibussowitsch         }
819798921bdaSJacob Faibussowitsch       }
819898921bdaSJacob Faibussowitsch     }
81999566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
82009566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
820198921bdaSJacob Faibussowitsch   }
820298921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
820398921bdaSJacob Faibussowitsch }
820472833a62Smarkadams4 
820598921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
820698921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
820798921bdaSJacob Faibussowitsch  * original definitions */
82089566063dSJacob Faibussowitsch #undef PetscCall
820998921bdaSJacob Faibussowitsch #undef SETERRQ
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