1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 1026cec326SBarry Smith { 1126cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1226cec326SBarry Smith 1326cec326SBarry Smith PetscFunctionBegin; 1426cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1526cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1626cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 1726cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 1826cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2026cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2126cec326SBarry Smith #else 2226cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 2326cec326SBarry Smith #endif 2426cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 2526cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 2626cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 2726cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 2826cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 2926cec326SBarry Smith 3026cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3126cec326SBarry Smith 3226cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 3326cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 3426cec326SBarry Smith 3526cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 4126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 4326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 4726cec326SBarry Smith #endif 4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 4926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 5026cec326SBarry Smith #endif 5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 5226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 5326cec326SBarry Smith #endif 5426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 5726cec326SBarry Smith #endif 5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 6026cec326SBarry Smith #endif 6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 6226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 6326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 6426cec326SBarry Smith #endif 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 6926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 7326cec326SBarry Smith #endif 7426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 7626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 7726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 7926cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 8026cec326SBarry Smith } 8126cec326SBarry Smith 8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 8326cec326SBarry Smith #define TYPE AIJ 8426cec326SBarry Smith #define TYPE_AIJ 8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 8626cec326SBarry Smith #undef TYPE 8726cec326SBarry Smith #undef TYPE_AIJ 8826cec326SBarry Smith 89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 90d71ae5a4SJacob Faibussowitsch { 918a9c020eSBarry Smith Mat B; 928a9c020eSBarry Smith 938a9c020eSBarry Smith PetscFunctionBegin; 948a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 958a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 968a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 97501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 998a9c020eSBarry Smith } 1008a9c020eSBarry Smith 101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 102d71ae5a4SJacob Faibussowitsch { 1038a9c020eSBarry Smith Mat B; 1048a9c020eSBarry Smith 1058a9c020eSBarry Smith PetscFunctionBegin; 1068a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1078a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 108501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1108a9c020eSBarry Smith } 1118a9c020eSBarry Smith 11201bebe75SBarry Smith /*MC 11301bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 11401bebe75SBarry Smith 11511a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 11611a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 11711a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 11801bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 11901bebe75SBarry Smith the above preallocation routines for simplicity. 12001bebe75SBarry Smith 12127430b45SBarry Smith Options Database Key: 12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 12301bebe75SBarry Smith 12411a5261eSBarry Smith Developer Note: 1252ef1f0ffSBarry Smith Level: beginner 1262ef1f0ffSBarry Smith 12711a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 12801bebe75SBarry Smith enough exist. 12901bebe75SBarry Smith 1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 13101bebe75SBarry Smith M*/ 13201bebe75SBarry Smith 13301bebe75SBarry Smith /*MC 13401bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 13501bebe75SBarry Smith 13611a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 13711a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 13811a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 13901bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14001bebe75SBarry Smith the above preallocation routines for simplicity. 14101bebe75SBarry Smith 14227430b45SBarry Smith Options Database Key: 14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 14401bebe75SBarry Smith 14501bebe75SBarry Smith Level: beginner 14601bebe75SBarry Smith 1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 14801bebe75SBarry Smith M*/ 14901bebe75SBarry Smith 150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 151d71ae5a4SJacob Faibussowitsch { 152f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 153f74ef234SStefano Zampini 154f74ef234SStefano Zampini PetscFunctionBegin; 155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 156b470e4b4SRichard Tran Mills A->boundtocpu = flg; 157f74ef234SStefano Zampini #endif 1581baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1591baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1603120d049SRichard Tran Mills 1613120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1623120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1633120d049SRichard Tran Mills * to differ from the parent matrix. */ 1641baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1651baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 167f74ef234SStefano Zampini } 168f74ef234SStefano Zampini 169ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 170d71ae5a4SJacob Faibussowitsch { 17126bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 17226bda2c4Sstefano_zampini 17326bda2c4Sstefano_zampini PetscFunctionBegin; 17446533700Sstefano_zampini if (mat->A) { 1759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 17746533700Sstefano_zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17926bda2c4Sstefano_zampini } 18026bda2c4Sstefano_zampini 181ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 182d71ae5a4SJacob Faibussowitsch { 18327d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 18427d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 18527d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 18627d4218bSShri Abhyankar const PetscInt *ia, *ib; 187ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 18827d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 18927d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 19027d4218bSShri Abhyankar 19127d4218bSShri Abhyankar PetscFunctionBegin; 192f4259b30SLisandro Dalcin *keptrows = NULL; 193ce496241SStefano Zampini 19427d4218bSShri Abhyankar ia = a->i; 19527d4218bSShri Abhyankar ib = b->i; 1969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 1979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 19827d4218bSShri Abhyankar for (i = 0; i < m; i++) { 19927d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 20027d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 20127d4218bSShri Abhyankar if (!na && !nb) { 20227d4218bSShri Abhyankar cnt++; 20327d4218bSShri Abhyankar goto ok1; 20427d4218bSShri Abhyankar } 205ce496241SStefano Zampini aa = aav + ia[i]; 20627d4218bSShri Abhyankar for (j = 0; j < na; j++) { 20727d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 20827d4218bSShri Abhyankar } 2098e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 21027d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 21127d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 21227d4218bSShri Abhyankar } 21327d4218bSShri Abhyankar cnt++; 21427d4218bSShri Abhyankar ok1:; 21527d4218bSShri Abhyankar } 2161c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 217ce496241SStefano Zampini if (!n0rows) { 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 221ce496241SStefano Zampini } 2229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 22327d4218bSShri Abhyankar cnt = 0; 22427d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22527d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22627d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22727d4218bSShri Abhyankar if (!na && !nb) continue; 228ce496241SStefano Zampini aa = aav + ia[i]; 22927d4218bSShri Abhyankar for (j = 0; j < na; j++) { 23027d4218bSShri Abhyankar if (aa[j] != 0.0) { 23127d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23227d4218bSShri Abhyankar goto ok2; 23327d4218bSShri Abhyankar } 23427d4218bSShri Abhyankar } 2358e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23627d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23727d4218bSShri Abhyankar if (bb[j] != 0.0) { 23827d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23927d4218bSShri Abhyankar goto ok2; 24027d4218bSShri Abhyankar } 24127d4218bSShri Abhyankar } 24227d4218bSShri Abhyankar ok2:; 24327d4218bSShri Abhyankar } 2449566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24827d4218bSShri Abhyankar } 24927d4218bSShri Abhyankar 250ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 251d71ae5a4SJacob Faibussowitsch { 25299e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 25394342113SStefano Zampini PetscBool cong; 25499e65526SBarry Smith 25599e65526SBarry Smith PetscFunctionBegin; 2569566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 25794342113SStefano Zampini if (Y->assembled && cong) { 2589566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 25999e65526SBarry Smith } else { 2609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 26199e65526SBarry Smith } 2623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26399e65526SBarry Smith } 26499e65526SBarry Smith 265ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 266d71ae5a4SJacob Faibussowitsch { 267f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 268f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 269f1f41ecbSJed Brown 270f1f41ecbSJed Brown PetscFunctionBegin; 2710298fd71SBarry Smith *zrows = NULL; 2729566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2739566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 274f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2759566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277f1f41ecbSJed Brown } 278f1f41ecbSJed Brown 279ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 280d71ae5a4SJacob Faibussowitsch { 2810716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 282a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 2830716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 2840716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 2850716a85fSBarry Smith PetscReal *work; 286ce496241SStefano Zampini const PetscScalar *dummy; 2876497c311SBarry Smith PetscMPIInt in; 2880716a85fSBarry Smith 2890716a85fSBarry Smith PetscFunctionBegin; 2909566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 2919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 2929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 2939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 2949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 2959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 296857cbf51SRichard Tran Mills if (type == NORM_2) { 297ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 298ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 299857cbf51SRichard Tran Mills } else if (type == NORM_1) { 300ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 301ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 302857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 303ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 304ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 305857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 306ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 307ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 308857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 309ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 310ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 311857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 3126497c311SBarry Smith PetscCall(PetscMPIIntCast(n, &in)); 313857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 3146497c311SBarry Smith PetscCall(MPIU_Allreduce(work, reductions, in, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3150716a85fSBarry Smith } else { 3166497c311SBarry Smith PetscCall(MPIU_Allreduce(work, reductions, in, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3170716a85fSBarry Smith } 3189566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 319857cbf51SRichard Tran Mills if (type == NORM_2) { 320a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 321857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 322a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3230716a85fSBarry Smith } 3243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3250716a85fSBarry Smith } 3260716a85fSBarry Smith 327ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 328d71ae5a4SJacob Faibussowitsch { 329e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 330e52d2c62SBarry Smith IS sis, gis; 331e52d2c62SBarry Smith const PetscInt *isis, *igis; 332e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 333e52d2c62SBarry Smith 334e52d2c62SBarry Smith PetscFunctionBegin; 3359566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3369566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3379566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3389566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3409566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 341e52d2c62SBarry Smith 3429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3439566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3449566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 345e52d2c62SBarry Smith n = ngis + nsis; 3469566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3479566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 348e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3499566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 350e52d2c62SBarry Smith 3519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3529566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 356e52d2c62SBarry Smith } 357e52d2c62SBarry Smith 358dd6ea824SBarry Smith /* 3590f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3609e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3610f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3620f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 36372fa4726SStefano Zampini has an order N integer array but is fast to access. 3649e25ed09SBarry Smith */ 365d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 366d71ae5a4SJacob Faibussowitsch { 36744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 368d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 369dbb450caSBarry Smith 3703a40ed3dSBarry Smith PetscFunctionBegin; 37108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 372aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 373eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 374c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 375b1fc9764SSatish Balay #else 3769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 377905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 378b1fc9764SSatish Balay #endif 3793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3809e25ed09SBarry Smith } 3819e25ed09SBarry Smith 382d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 383a8f51744SPierre Jolivet do { \ 384db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 385db4deed7SKarl Rupp else high1 = nrow1; \ 386fd3458f5SBarry Smith lastcol1 = col; \ 387fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 388fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 389fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 390fd3458f5SBarry Smith else low1 = t; \ 391ba4e3ef2SSatish Balay } \ 392fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 393fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 394fd3458f5SBarry Smith if (rp1[_i] == col) { \ 3950c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 3960c0d7e18SFande Kong ap1[_i] += value; \ 3970c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 3980c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 3999371c9d4SSatish Balay } else ap1[_i] = value; \ 40030770e4dSSatish Balay goto a_noinsert; \ 4010520107fSSatish Balay } \ 4020520107fSSatish Balay } \ 4039371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4049371c9d4SSatish Balay low1 = 0; \ 4059371c9d4SSatish Balay high1 = nrow1; \ 4069371c9d4SSatish Balay goto a_noinsert; \ 4079371c9d4SSatish Balay } \ 4089371c9d4SSatish Balay if (nonew == 1) { \ 4099371c9d4SSatish Balay low1 = 0; \ 4109371c9d4SSatish Balay high1 = nrow1; \ 4119371c9d4SSatish Balay goto a_noinsert; \ 4129371c9d4SSatish Balay } \ 41308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 414fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4159371c9d4SSatish Balay N = nrow1++ - 1; \ 4169371c9d4SSatish Balay a->nz++; \ 4179371c9d4SSatish Balay high1++; \ 4180520107fSSatish Balay /* shift up all the later entries in this row */ \ 4199566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4209566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 421fd3458f5SBarry Smith rp1[_i] = col; \ 422fd3458f5SBarry Smith ap1[_i] = value; \ 42330770e4dSSatish Balay a_noinsert:; \ 424fd3458f5SBarry Smith ailen[row] = nrow1; \ 425a8f51744SPierre Jolivet } while (0) 4260a198c4cSBarry Smith 427d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 428a8f51744SPierre Jolivet do { \ 429db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 430db4deed7SKarl Rupp else high2 = nrow2; \ 431fd3458f5SBarry Smith lastcol2 = col; \ 432fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 433fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 434fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 435fd3458f5SBarry Smith else low2 = t; \ 436ba4e3ef2SSatish Balay } \ 437fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 438fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 439fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4400c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4410c0d7e18SFande Kong ap2[_i] += value; \ 4420c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4439371c9d4SSatish Balay } else ap2[_i] = value; \ 44430770e4dSSatish Balay goto b_noinsert; \ 44530770e4dSSatish Balay } \ 44630770e4dSSatish Balay } \ 4479371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4489371c9d4SSatish Balay low2 = 0; \ 4499371c9d4SSatish Balay high2 = nrow2; \ 4509371c9d4SSatish Balay goto b_noinsert; \ 4519371c9d4SSatish Balay } \ 4529371c9d4SSatish Balay if (nonew == 1) { \ 4539371c9d4SSatish Balay low2 = 0; \ 4549371c9d4SSatish Balay high2 = nrow2; \ 4559371c9d4SSatish Balay goto b_noinsert; \ 4569371c9d4SSatish Balay } \ 45708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 458fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4599371c9d4SSatish Balay N = nrow2++ - 1; \ 4609371c9d4SSatish Balay b->nz++; \ 4619371c9d4SSatish Balay high2++; \ 46230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 465fd3458f5SBarry Smith rp2[_i] = col; \ 466fd3458f5SBarry Smith ap2[_i] = value; \ 46730770e4dSSatish Balay b_noinsert:; \ 468fd3458f5SBarry Smith bilen[row] = nrow2; \ 469a8f51744SPierre Jolivet } while (0) 47030770e4dSSatish Balay 471ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 472d71ae5a4SJacob Faibussowitsch { 4732fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4742fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4752fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 476fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4772fd7e33dSBarry Smith 4782fd7e33dSBarry Smith PetscFunctionBegin; 4792fd7e33dSBarry Smith /* code only works for square matrices A */ 4802fd7e33dSBarry Smith 4812fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 4829566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 4832fd7e33dSBarry Smith row = row - diag; 4842fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 4852fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 4862fd7e33dSBarry Smith } 487fff043a9SJunchao Zhang if (l) { 4889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 4899566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 4909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 491fff043a9SJunchao Zhang } 4922fd7e33dSBarry Smith 4932fd7e33dSBarry Smith /* diagonal part */ 494fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 4959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 4969566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row]))); 4979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 498fff043a9SJunchao Zhang } 4992fd7e33dSBarry Smith 5002fd7e33dSBarry Smith /* right of diagonal part */ 501fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5039566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 505fff043a9SJunchao Zhang } 5063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5072fd7e33dSBarry Smith } 5082fd7e33dSBarry Smith 509d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 510d71ae5a4SJacob Faibussowitsch { 51144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 512071fcb05SBarry Smith PetscScalar value = 0.0; 513d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 514d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 515ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5168a729477SBarry Smith 5170520107fSSatish Balay /* Some Variables required in the macro */ 5184ee7247eSSatish Balay Mat A = aij->A; 5194ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 52057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 521ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 52230770e4dSSatish Balay Mat B = aij->B; 52330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 524d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 525ce496241SStefano Zampini MatScalar *aa, *ba; 526fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5278d76821aSHong Zhang PetscInt nonew; 528a77337e4SBarry Smith MatScalar *ap1, *ap2; 5294ee7247eSSatish Balay 5303a40ed3dSBarry Smith PetscFunctionBegin; 5319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5338a729477SBarry Smith for (i = 0; i < m; i++) { 5345ef9f2a5SBarry Smith if (im[i] < 0) continue; 53508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5364b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5374b0e389bSBarry Smith row = im[i] - rstart; 538fd3458f5SBarry Smith lastcol1 = -1; 5398e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5408e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 541fd3458f5SBarry Smith rmax1 = aimax[row]; 542fd3458f5SBarry Smith nrow1 = ailen[row]; 543fd3458f5SBarry Smith low1 = 0; 544fd3458f5SBarry Smith high1 = nrow1; 545fd3458f5SBarry Smith lastcol2 = -1; 5468e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5478e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 548fd3458f5SBarry Smith rmax2 = bimax[row]; 549d498b1e9SBarry Smith nrow2 = bilen[row]; 550fd3458f5SBarry Smith low2 = 0; 551fd3458f5SBarry Smith high2 = nrow2; 552fd3458f5SBarry Smith 5531eb62cbbSBarry Smith for (j = 0; j < n; j++) { 554071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 555c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 556fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 557fd3458f5SBarry Smith col = in[j] - cstart; 5588d76821aSHong Zhang nonew = a->nonew; 559d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 560f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 561f7d195e4SLawrence Mitchell continue; 562f7d195e4SLawrence Mitchell } else { 563f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 564227d817aSBarry Smith if (mat->was_assembled) { 56548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 566aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 567eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 568fa46199cSSatish Balay col--; 569b1fc9764SSatish Balay #else 570905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 571b1fc9764SSatish Balay #endif 572f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 5739566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); /* Change aij->B from reduced/local format to expanded/global format */ 5744b0e389bSBarry Smith col = in[j]; 5759bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 576f9508a3cSSatish Balay B = aij->B; 577f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5789371c9d4SSatish Balay bimax = b->imax; 5799371c9d4SSatish Balay bi = b->i; 5809371c9d4SSatish Balay bilen = b->ilen; 5819371c9d4SSatish Balay bj = b->j; 5829371c9d4SSatish Balay ba = b->a; 583cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 584cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 585d498b1e9SBarry Smith rmax2 = bimax[row]; 586d498b1e9SBarry Smith nrow2 = bilen[row]; 587d498b1e9SBarry Smith low2 = 0; 588d498b1e9SBarry Smith high2 = nrow2; 589d0f46423SBarry Smith bm = aij->B->rmap->n; 590f9508a3cSSatish Balay ba = b->a; 591d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 592f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 5939566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 59498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 5950587a0fcSBarry Smith } 596c48de900SBarry Smith } else col = in[j]; 5978d76821aSHong Zhang nonew = b->nonew; 598d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 5991eb62cbbSBarry Smith } 6001eb62cbbSBarry Smith } 6015ef9f2a5SBarry Smith } else { 60228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 60390f02eecSBarry Smith if (!aij->donotstash) { 6045080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 605d36fbae8SSatish Balay if (roworiented) { 6068e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 607d36fbae8SSatish Balay } else { 6088e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6094b0e389bSBarry Smith } 6101eb62cbbSBarry Smith } 6118a729477SBarry Smith } 61290f02eecSBarry Smith } 6135519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6168a729477SBarry Smith } 6178a729477SBarry Smith 6182b08fdbeSandi selinger /* 619904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6202b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 621904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6222b08fdbeSandi selinger */ 623d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 624d71ae5a4SJacob Faibussowitsch { 625904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 626904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6274cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 628904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 629904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 630904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 631904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 632904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6336dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 634904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 635904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 636904d1e70Sandi selinger 637904d1e70Sandi selinger PetscFunctionBegin; 638904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 639904d1e70Sandi selinger for (j = 0; j < am; j++) { 640904d1e70Sandi selinger dnz = onz = 0; 641904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6426dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 643904d1e70Sandi selinger /* If column is in the diagonal */ 644904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 645904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 646904d1e70Sandi selinger dnz++; 647904d1e70Sandi selinger } else { /* off-diagonal entries */ 648904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 649904d1e70Sandi selinger onz++; 650904d1e70Sandi selinger } 651904d1e70Sandi selinger } 652904d1e70Sandi selinger ailen[j] = dnz; 653904d1e70Sandi selinger bilen[j] = onz; 654904d1e70Sandi selinger } 6553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 656904d1e70Sandi selinger } 657904d1e70Sandi selinger 658904d1e70Sandi selinger /* 659904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 660904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6611de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6621de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6631de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 664904d1e70Sandi selinger */ 665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 666d71ae5a4SJacob Faibussowitsch { 6673a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6683a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6694cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 670f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6713a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6723a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6733a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6743a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6753a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6766dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6771de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 678904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 679904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6803a063d27Sandi selinger 6813a063d27Sandi selinger PetscFunctionBegin; 6823a063d27Sandi selinger /* Iterate over all rows of the matrix */ 6833a063d27Sandi selinger for (j = 0; j < am; j++) { 684904d1e70Sandi selinger dnz_row = onz_row = 0; 685904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 686904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 687e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 688e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 689ae8e66a0Sandi selinger /* If column is in the diagonal */ 6903a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 691904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 692904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 693904d1e70Sandi selinger dnz_row++; 694ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 695904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 696904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 697904d1e70Sandi selinger onz_row++; 6983a063d27Sandi selinger } 6993a063d27Sandi selinger } 700904d1e70Sandi selinger ailen[j] = dnz_row; 701904d1e70Sandi selinger bilen[j] = onz_row; 7023a063d27Sandi selinger } 7033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7043a063d27Sandi selinger } 7053a063d27Sandi selinger 706ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 707d71ae5a4SJacob Faibussowitsch { 708b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 709d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 710d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 711b49de8d1SLois Curfman McInnes 7123a40ed3dSBarry Smith PetscFunctionBegin; 713b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 71454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 71554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 71685835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 717b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 718b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 71954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 72054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 721b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 722b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7239566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 724fa852ad4SSatish Balay } else { 72548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 726aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 727eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 728fa46199cSSatish Balay col--; 729b1fc9764SSatish Balay #else 730905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 731b1fc9764SSatish Balay #endif 732e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 73348a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 734b49de8d1SLois Curfman McInnes } 735b49de8d1SLois Curfman McInnes } 736b49de8d1SLois Curfman McInnes } 7373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 738b49de8d1SLois Curfman McInnes } 739bc5ccf88SSatish Balay 740ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 741d71ae5a4SJacob Faibussowitsch { 742bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 743b1d57f15SBarry Smith PetscInt nstash, reallocs; 744bc5ccf88SSatish Balay 745bc5ccf88SSatish Balay PetscFunctionBegin; 7463ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 747bc5ccf88SSatish Balay 7489566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7499566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7509566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 752bc5ccf88SSatish Balay } 753bc5ccf88SSatish Balay 754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 755d71ae5a4SJacob Faibussowitsch { 756bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 757b1d57f15SBarry Smith PetscMPIInt n; 758b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 759e44c0bd4SBarry Smith PetscInt *row, *col; 760ace3abfcSBarry Smith PetscBool other_disassembled; 76187828ca2SBarry Smith PetscScalar *val; 762bc5ccf88SSatish Balay 76391c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7646e111a19SKarl Rupp 765bc5ccf88SSatish Balay PetscFunctionBegin; 7664cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 767a2d1c673SSatish Balay while (1) { 7689566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 769a2d1c673SSatish Balay if (!flg) break; 770a2d1c673SSatish Balay 771bc5ccf88SSatish Balay for (i = 0; i < n;) { 772bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7732205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7742205254eSKarl Rupp if (row[j] != rstart) break; 7752205254eSKarl Rupp } 776bc5ccf88SSatish Balay if (j < n) ncols = j - i; 777bc5ccf88SSatish Balay else ncols = n - i; 778bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7799566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 780bc5ccf88SSatish Balay i = j; 781bc5ccf88SSatish Balay } 782bc5ccf88SSatish Balay } 7839566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 784bc5ccf88SSatish Balay } 7858c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 786c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 7879ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 7889ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 7899566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 7909566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 7919ecce9b1SRichard Tran Mills } 792e2cf4d64SStefano Zampini #endif 7939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 7949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 795bc5ccf88SSatish Balay 796bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 797071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 798bc5ccf88SSatish Balay /* 799bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 800bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 801bc5ccf88SSatish Balay */ 802bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 8035f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 80435cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 8059566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 806ad59fb31SSatish Balay } 807ad59fb31SSatish Balay } 80848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8099566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8108c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 811c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 812e2cf4d64SStefano Zampini #endif 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 815bc5ccf88SSatish Balay 8169566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8172205254eSKarl Rupp 818f4259b30SLisandro Dalcin aij->rowvalues = NULL; 819a30b2313SHong Zhang 8209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 821e56f5c9eSBarry Smith 8224f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 823f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 824e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 8251c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 826e56f5c9eSBarry Smith } 8278c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 828c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 829e2cf4d64SStefano Zampini #endif 8303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 831bc5ccf88SSatish Balay } 832bc5ccf88SSatish Balay 833ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 834d71ae5a4SJacob Faibussowitsch { 83544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8363a40ed3dSBarry Smith 8373a40ed3dSBarry Smith PetscFunctionBegin; 8389566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8399566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8411eb62cbbSBarry Smith } 8421eb62cbbSBarry Smith 843ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 844d71ae5a4SJacob Faibussowitsch { 8451b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8461b1dd7adSMatthew G. Knepley PetscInt *lrows; 8476e520ac8SStefano Zampini PetscInt r, len; 8489939a2d1SBarry Smith PetscBool cong; 8491eb62cbbSBarry Smith 8503a40ed3dSBarry Smith PetscFunctionBegin; 8516e520ac8SStefano Zampini /* get locally owned rows */ 8529566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8539566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 854dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 85597b48c8fSBarry Smith if (x && b) { 8561b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8571b1dd7adSMatthew G. Knepley PetscScalar *bb; 8581b1dd7adSMatthew G. Knepley 85928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8609566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8619566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8621b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8639566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8649566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 86597b48c8fSBarry Smith } 866a92ad425SStefano Zampini 867a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8689566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8699566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 870a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 871a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 872a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 873a92ad425SStefano Zampini PetscInt nnwA, nnwB; 874a92ad425SStefano Zampini PetscBool nnzA, nnzB; 875a92ad425SStefano Zampini 876a92ad425SStefano Zampini nnwA = aijA->nonew; 877a92ad425SStefano Zampini nnwB = aijB->nonew; 878a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 879a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 880a92ad425SStefano Zampini if (!nnzA) { 8819566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 882a92ad425SStefano Zampini aijA->nonew = 0; 883a92ad425SStefano Zampini } 884a92ad425SStefano Zampini if (!nnzB) { 8859566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 886a92ad425SStefano Zampini aijB->nonew = 0; 887a92ad425SStefano Zampini } 888a92ad425SStefano Zampini /* Must zero here before the next loop */ 8899566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8909566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8911b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 8921b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 893a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 8949566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 895e2d53e46SBarry Smith } 896a92ad425SStefano Zampini aijA->nonew = nnwA; 897a92ad425SStefano Zampini aijB->nonew = nnwB; 8986eb55b6aSBarry Smith } else { 8999566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9009566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9016eb55b6aSBarry Smith } 9029566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9039566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9049566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9054f9cfa9eSBarry Smith 9069939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 907f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9089939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 9099939a2d1SBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9109939a2d1SBarry Smith } 9113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9121eb62cbbSBarry Smith } 9131eb62cbbSBarry Smith 914ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 915d71ae5a4SJacob Faibussowitsch { 9169c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9176497c311SBarry Smith PetscInt n = A->rmap->n; 918131c27b5Sprj- PetscInt i, j, r, m, len = 0; 91954bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 920131c27b5Sprj- PetscMPIInt p = 0; 92154bd4135SMatthew G. Knepley PetscSFNode *rrows; 92254bd4135SMatthew G. Knepley PetscSF sf; 9239c7c4993SBarry Smith const PetscScalar *xx; 924fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 925564f14d6SBarry Smith Vec xmask, lmask; 926564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 927564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 928564f14d6SBarry Smith PetscScalar *aa; 9299c7c4993SBarry Smith 9309c7c4993SBarry Smith PetscFunctionBegin; 93154bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 93354bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 93554bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 93654bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 937aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9385ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9399566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9405ba17502SJed Brown } 94154bd4135SMatthew G. Knepley rrows[r].rank = p; 94254bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9439c7c4993SBarry Smith } 9449566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9459566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 94654bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9479566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9489566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9499566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 95054bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9519371c9d4SSatish Balay for (r = 0; r < n; ++r) 9529371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 953564f14d6SBarry Smith /* zero diagonal part of matrix */ 9549566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9554cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9569566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9579566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9589566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 95954bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9629566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9639566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 964a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 965a92ad425SStefano Zampini PetscBool cong; 966a92ad425SStefano Zampini 9679566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 96828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9719566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9729566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 973377aa5a1SBarry Smith } 9749566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9754cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 977564f14d6SBarry Smith ii = aij->i; 9788e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 979564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 980564f14d6SBarry Smith if (aij->compressedrow.use) { 981564f14d6SBarry Smith m = aij->compressedrow.nrows; 982564f14d6SBarry Smith ii = aij->compressedrow.i; 983564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 984564f14d6SBarry Smith for (i = 0; i < m; i++) { 985564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 986564f14d6SBarry Smith aj = aij->j + ii[i]; 987fff043a9SJunchao Zhang aa = aij_a + ii[i]; 988564f14d6SBarry Smith 989564f14d6SBarry Smith for (j = 0; j < n; j++) { 99025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 991377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 992564f14d6SBarry Smith *aa = 0.0; 993564f14d6SBarry Smith } 994564f14d6SBarry Smith aa++; 995564f14d6SBarry Smith aj++; 996564f14d6SBarry Smith } 997564f14d6SBarry Smith ridx++; 998564f14d6SBarry Smith } 999564f14d6SBarry Smith } else { /* do not use compressed row format */ 1000564f14d6SBarry Smith m = l->B->rmap->n; 1001564f14d6SBarry Smith for (i = 0; i < m; i++) { 1002564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1003564f14d6SBarry Smith aj = aij->j + ii[i]; 1004fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1005564f14d6SBarry Smith for (j = 0; j < n; j++) { 100625266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1007377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1008564f14d6SBarry Smith *aa = 0.0; 1009564f14d6SBarry Smith } 1010564f14d6SBarry Smith aa++; 1011564f14d6SBarry Smith aj++; 1012564f14d6SBarry Smith } 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith } 1015a92ad425SStefano Zampini if (x && b) { 10169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1018377aa5a1SBarry Smith } 10199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10209566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10229566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10234f9cfa9eSBarry Smith 10244f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1025f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10264f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 10271c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10284f9cfa9eSBarry Smith } 10293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10309c7c4993SBarry Smith } 10319c7c4993SBarry Smith 1032ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1033d71ae5a4SJacob Faibussowitsch { 1034416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1035b1d57f15SBarry Smith PetscInt nt; 103619b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1037416022c9SBarry Smith 10383a40ed3dSBarry Smith PetscFunctionBegin; 10399566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 104008401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10419566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1042296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10439566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1044296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10461eb62cbbSBarry Smith } 10471eb62cbbSBarry Smith 1048ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1049d71ae5a4SJacob Faibussowitsch { 1050bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1051bd0c2dcbSBarry Smith 1052bd0c2dcbSBarry Smith PetscFunctionBegin; 10539566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1055bd0c2dcbSBarry Smith } 1056bd0c2dcbSBarry Smith 1057ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1058d71ae5a4SJacob Faibussowitsch { 1059416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 106001ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10613a40ed3dSBarry Smith 10623a40ed3dSBarry Smith PetscFunctionBegin; 10639566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10649566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10659566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10669566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1068da3a660dSBarry Smith } 1069da3a660dSBarry Smith 1070ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1071d71ae5a4SJacob Faibussowitsch { 1072416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1073da3a660dSBarry Smith 10743a40ed3dSBarry Smith PetscFunctionBegin; 1075da3a660dSBarry Smith /* do nondiagonal part */ 10769566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1077da3a660dSBarry Smith /* do local part */ 10789566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10799613dc34SJunchao Zhang /* add partial results together */ 10809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10819566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1083da3a660dSBarry Smith } 1084da3a660dSBarry Smith 1085ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1086d71ae5a4SJacob Faibussowitsch { 10874f423910Svictorle MPI_Comm comm; 1088ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1089ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1090cd0d46ebSvictorle IS Me, Notme; 1091b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 109254d735aeSStefano Zampini PetscBool lf; 1093b1d57f15SBarry Smith PetscMPIInt size; 1094cd0d46ebSvictorle 1095cd0d46ebSvictorle PetscFunctionBegin; 109642e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 10979566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 10981c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 10993ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11023ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 110342e5f5b4Svictorle 11047dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11059566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11069566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1108cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1109cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11109566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11119566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11129566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 111366501d38Svictorle Aoff = Aoffs[0]; 11149566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 111566501d38Svictorle Boff = Boffs[0]; 11169566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11179566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11189566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11219566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1123cd0d46ebSvictorle } 1124cd0d46ebSvictorle 1125ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1126d71ae5a4SJacob Faibussowitsch { 1127416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1128da3a660dSBarry Smith 11293a40ed3dSBarry Smith PetscFunctionBegin; 1130da3a660dSBarry Smith /* do nondiagonal part */ 11319566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1132da3a660dSBarry Smith /* do local part */ 11339566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11349613dc34SJunchao Zhang /* add partial results together */ 11359566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11369566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1138da3a660dSBarry Smith } 1139da3a660dSBarry Smith 11401eb62cbbSBarry Smith /* 11411eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11421eb62cbbSBarry Smith diagonal block 11431eb62cbbSBarry Smith */ 1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1145d71ae5a4SJacob Faibussowitsch { 1146416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11473a40ed3dSBarry Smith 11483a40ed3dSBarry Smith PetscFunctionBegin; 114908401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1150aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11519566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11531eb62cbbSBarry Smith } 11541eb62cbbSBarry Smith 1155ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1156d71ae5a4SJacob Faibussowitsch { 1157052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11583a40ed3dSBarry Smith 11593a40ed3dSBarry Smith PetscFunctionBegin; 11609566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11619566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1163052efed2SBarry Smith } 1164052efed2SBarry Smith 1165ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1166d71ae5a4SJacob Faibussowitsch { 11678e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11688e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11698e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11703ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11712e5835c6SStefano Zampini const PetscScalar *aa, *ba; 117217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 117317a3732bSBarry Smith PetscInt64 nz, hnz; 11743ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11753ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11763ea6fe3dSLisandro Dalcin PetscScalar *matvals; 117717a3732bSBarry Smith PetscMPIInt rank; 11788e2fed03SBarry Smith 11798e2fed03SBarry Smith PetscFunctionBegin; 11809566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11813ea6fe3dSLisandro Dalcin 11823ea6fe3dSLisandro Dalcin M = mat->rmap->N; 11833ea6fe3dSLisandro Dalcin N = mat->cmap->N; 11843ea6fe3dSLisandro Dalcin m = mat->rmap->n; 11853ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 11863ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 11878e2fed03SBarry Smith nz = A->nz + B->nz; 11883ea6fe3dSLisandro Dalcin 11893ea6fe3dSLisandro Dalcin /* write matrix header */ 11900700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 11919371c9d4SSatish Balay header[1] = M; 11929371c9d4SSatish Balay header[2] = N; 119317a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 119417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 119538b83642SBarry Smith if (rank == 0) { 1196*1690c2aeSBarry Smith if (hnz > PETSC_INT_MAX) header[3] = PETSC_INT_MAX; 119738b83642SBarry Smith else header[3] = (PetscInt)hnz; 119838b83642SBarry Smith } 11999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12008e2fed03SBarry Smith 12013ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12033ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12049566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12059566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12068e2fed03SBarry Smith 12073ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12093ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12103ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12113ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12123ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12138e2fed03SBarry Smith } 12149371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12159371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12168e2fed03SBarry Smith } 121717a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12189566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12199566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12208e2fed03SBarry Smith 12213ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12253ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12263ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12273ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12282e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12298e2fed03SBarry Smith } 12309371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12319371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12328e2fed03SBarry Smith } 12339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 123517a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12369566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12379566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12388e2fed03SBarry Smith 12393ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12409566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12428e2fed03SBarry Smith } 12438e2fed03SBarry Smith 12449804daf3SBarry Smith #include <petscdraw.h> 1245ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1246d71ae5a4SJacob Faibussowitsch { 124744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 124832dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1249ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1250b0a32e0cSBarry Smith PetscViewer sviewer; 1251f3ef73ceSBarry Smith PetscViewerFormat format; 1252416022c9SBarry Smith 12533a40ed3dSBarry Smith PetscFunctionBegin; 12549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12559566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 125732077d6dSBarry Smith if (iascii) { 12589566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1259ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 1260*1690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1263ef5fdb51SBarry Smith for (i = 0; i < (PetscInt)size; i++) { 1264ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1265ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1266ef5fdb51SBarry Smith navg += nz[i]; 1267ef5fdb51SBarry Smith } 12689566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1269ef5fdb51SBarry Smith navg = navg / size; 12709566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1272ef5fdb51SBarry Smith } 12739566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1274456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12754e220ebcSLois Curfman McInnes MatInfo info; 12766335e310SSatish Balay PetscInt *inodes = NULL; 1277923f20ffSKris Buschelman 12789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12799566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12809566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1282923f20ffSKris Buschelman if (!inodes) { 12839371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12849371c9d4SSatish Balay (double)info.memory)); 12856831982aSBarry Smith } else { 12869371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12879371c9d4SSatish Balay (double)info.memory)); 12886831982aSBarry Smith } 12899566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12919566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 12929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12939566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 12949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 12959566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 12969566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 12973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1298fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1299923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13009566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1301923f20ffSKris Buschelman if (inodes) { 13029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1303d38fa0fbSBarry Smith } else { 13049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1305d38fa0fbSBarry Smith } 13063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13074aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 130908480c60SBarry Smith } 13108e2fed03SBarry Smith } else if (isbinary) { 13118e2fed03SBarry Smith if (size == 1) { 13129566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13139566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13148e2fed03SBarry Smith } else { 13159566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13168e2fed03SBarry Smith } 13173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131871e56450SStefano Zampini } else if (iascii && size == 1) { 13199566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13209566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13220f5bd95cSBarry Smith } else if (isdraw) { 1323b0a32e0cSBarry Smith PetscDraw draw; 1324ace3abfcSBarry Smith PetscBool isnull; 13259566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13269566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13273ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 132819bcc07fSBarry Smith } 132919bcc07fSBarry Smith 133071e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 133171e56450SStefano Zampini Mat A = NULL, Av; 133271e56450SStefano Zampini IS isrow, iscol; 13332ee70a88SLois Curfman McInnes 13349566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13359566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13369566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13379566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 133871e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 133971e56450SStefano Zampini /* 134071e56450SStefano Zampini Mat *AA, A = NULL, Av; 134171e56450SStefano Zampini IS isrow,iscol; 134271e56450SStefano Zampini 13439566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13449566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13459566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1346dd400576SPatrick Sanan if (rank == 0) { 13479566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 134871e56450SStefano Zampini A = AA[0]; 134971e56450SStefano Zampini Av = AA[0]; 135095373324SBarry Smith } 13519566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 135271e56450SStefano Zampini */ 13539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 135555843e3eSBarry Smith /* 135655843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1357b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 135855843e3eSBarry Smith */ 13599566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1360dd400576SPatrick Sanan if (rank == 0) { 136148a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13629566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 136395373324SBarry Smith } 13649566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13659566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 136695373324SBarry Smith } 13673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13681eb62cbbSBarry Smith } 13691eb62cbbSBarry Smith 1370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1371d71ae5a4SJacob Faibussowitsch { 1372ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1373416022c9SBarry Smith 13743a40ed3dSBarry Smith PetscFunctionBegin; 13759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13789566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 137948a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1381416022c9SBarry Smith } 1382416022c9SBarry Smith 1383ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1384d71ae5a4SJacob Faibussowitsch { 138544a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1386f4259b30SLisandro Dalcin Vec bb1 = NULL; 1387ace3abfcSBarry Smith PetscBool hasop; 13888a729477SBarry Smith 13893a40ed3dSBarry Smith PetscFunctionBegin; 1390a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 13919566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 13923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1393a2b30743SBarry Smith } 1394a2b30743SBarry Smith 139548a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 13964e980039SJed Brown 1397c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1398da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 13999566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14002798e883SHong Zhang its--; 1401da3a660dSBarry Smith } 14022798e883SHong Zhang 14032798e883SHong Zhang while (its--) { 14049566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14059566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14062798e883SHong Zhang 1407c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14089566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14099566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14102798e883SHong Zhang 1411c14dc6b6SHong Zhang /* local sweep */ 14129566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14132798e883SHong Zhang } 14143a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1415da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14172798e883SHong Zhang its--; 1418da3a660dSBarry Smith } 14192798e883SHong Zhang while (its--) { 14209566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14219566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14222798e883SHong Zhang 1423c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14249566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14259566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1426c14dc6b6SHong Zhang 1427c14dc6b6SHong Zhang /* local sweep */ 14289566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14292798e883SHong Zhang } 14303a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1431da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14329566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14332798e883SHong Zhang its--; 1434da3a660dSBarry Smith } 14352798e883SHong Zhang while (its--) { 14369566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14379566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14382798e883SHong Zhang 1439c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14409566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14419566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14422798e883SHong Zhang 1443c14dc6b6SHong Zhang /* local sweep */ 14449566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14452798e883SHong Zhang } 1446a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1447a7420bb7SBarry Smith Vec xx1; 1448a7420bb7SBarry Smith 14499566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14509566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1451a7420bb7SBarry Smith 14529566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14539566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1454a7420bb7SBarry Smith if (!mat->diag) { 14559566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14569566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1457a7420bb7SBarry Smith } 14589566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1459bd0c2dcbSBarry Smith if (hasop) { 14609566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1461bd0c2dcbSBarry Smith } else { 14629566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1463bd0c2dcbSBarry Smith } 14649566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1465887ee2caSBarry Smith 14669566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1467a7420bb7SBarry Smith 1468a7420bb7SBarry Smith /* local sweep */ 14699566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14709566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14719566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1472ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1473c14dc6b6SHong Zhang 14749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1475a0808db4SHong Zhang 14767b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14788a729477SBarry Smith } 1479a66be287SLois Curfman McInnes 1480ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1481d71ae5a4SJacob Faibussowitsch { 148272e6a0cfSJed Brown Mat aA, aB, Aperm; 148372e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 148472e6a0cfSJed Brown PetscScalar *aa, *ba; 148572e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 148672e6a0cfSJed Brown PetscSF rowsf, sf; 14870298fd71SBarry Smith IS parcolp = NULL; 148872e6a0cfSJed Brown PetscBool done; 148942e855d1Svictor 149042e855d1Svictor PetscFunctionBegin; 14919566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 14929566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 14939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 14949566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 149572e6a0cfSJed Brown 149672e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 14979566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 14989566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 14999566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 150072e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15019566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15029566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 150372e6a0cfSJed Brown 150472e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15059566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15069566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15079566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 150872e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15099566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15109566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15119566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 151272e6a0cfSJed Brown 15139566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15149566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15159566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 151672e6a0cfSJed Brown 151772e6a0cfSJed Brown /* Find out where my gcols should go */ 15189566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15209566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15219566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15249566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15259566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152672e6a0cfSJed Brown 15279566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15289566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15299566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 153072e6a0cfSJed Brown for (i = 0; i < m; i++) { 1531131c27b5Sprj- PetscInt row = rdest[i]; 1532131c27b5Sprj- PetscMPIInt rowner; 15339566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 153472e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1535131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1536131c27b5Sprj- PetscMPIInt cowner; 15379566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 153872e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 153972e6a0cfSJed Brown else onnz[i]++; 154072e6a0cfSJed Brown } 154172e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1542131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1543131c27b5Sprj- PetscMPIInt cowner; 15449566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 154572e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 154672e6a0cfSJed Brown else onnz[i]++; 154772e6a0cfSJed Brown } 154872e6a0cfSJed Brown } 15499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15519566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 155472e6a0cfSJed Brown 15559566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 155872e6a0cfSJed Brown for (i = 0; i < m; i++) { 155972e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1560970468b0SJed Brown PetscInt j0, rowlen; 156172e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1562970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1563970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15649566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1565970468b0SJed Brown } 156672e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1567970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1568970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15699566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1570970468b0SJed Brown } 157172e6a0cfSJed Brown } 15729566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15739566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15749566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15759566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15789566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15799566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15809566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15819566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 158272e6a0cfSJed Brown *B = Aperm; 15833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 158442e855d1Svictor } 158542e855d1Svictor 1586ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1587d71ae5a4SJacob Faibussowitsch { 1588c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1589c5e4d11fSDmitry Karpeev 1590c5e4d11fSDmitry Karpeev PetscFunctionBegin; 15919566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1592c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 15933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1594c5e4d11fSDmitry Karpeev } 1595c5e4d11fSDmitry Karpeev 1596ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1597d71ae5a4SJacob Faibussowitsch { 1598a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1599a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16003966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1601a66be287SLois Curfman McInnes 16023a40ed3dSBarry Smith PetscFunctionBegin; 16034e220ebcSLois Curfman McInnes info->block_size = 1.0; 16049566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16052205254eSKarl Rupp 16069371c9d4SSatish Balay isend[0] = info->nz_used; 16079371c9d4SSatish Balay isend[1] = info->nz_allocated; 16089371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16099371c9d4SSatish Balay isend[3] = info->memory; 16109371c9d4SSatish Balay isend[4] = info->mallocs; 16112205254eSKarl Rupp 16129566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16132205254eSKarl Rupp 16149371c9d4SSatish Balay isend[0] += info->nz_used; 16159371c9d4SSatish Balay isend[1] += info->nz_allocated; 16169371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16179371c9d4SSatish Balay isend[3] += info->memory; 16189371c9d4SSatish Balay isend[4] += info->mallocs; 1619a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16204e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16214e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16224e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16234e220ebcSLois Curfman McInnes info->memory = isend[3]; 16244e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1625a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 16261c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16272205254eSKarl Rupp 16284e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16294e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16304e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16314e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16324e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1633a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 16341c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16352205254eSKarl Rupp 16364e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16374e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16384e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16394e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16404e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1641a66be287SLois Curfman McInnes } 16424e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16434e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16444e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1646a66be287SLois Curfman McInnes } 1647a66be287SLois Curfman McInnes 1648d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1649d71ae5a4SJacob Faibussowitsch { 1650c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1651c74985f6SBarry Smith 16523a40ed3dSBarry Smith PetscFunctionBegin; 165312c028f9SKris Buschelman switch (op) { 1654512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 165512c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 165628b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1657a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 165812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16590ad02fcaSStefano Zampini case MAT_USE_INODES: 166012c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16611a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1662fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16639566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16649566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 166512c028f9SKris Buschelman break; 166612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 166743674050SBarry Smith MatCheckPreallocated(A, 1); 16684e0d8c25SBarry Smith a->roworiented = flg; 16692205254eSKarl Rupp 16709566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16719566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 167212c028f9SKris Buschelman break; 16738c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1674d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1675d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1676d71ae5a4SJacob Faibussowitsch break; 1677d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1678d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1679d71ae5a4SJacob Faibussowitsch break; 1680c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1681ffa07934SHong Zhang case MAT_SPD: 168277e54ba9SKris Buschelman case MAT_SYMMETRIC: 168377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1684bf108f30SBarry Smith case MAT_HERMITIAN: 1685bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1686b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1687b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1688b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 168977e54ba9SKris Buschelman break; 1690d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1691d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1692d71ae5a4SJacob Faibussowitsch break; 1693957cac9fSHong Zhang case MAT_STRUCTURE_ONLY: 1694957cac9fSHong Zhang /* The option is handled directly by MatSetOption() */ 1695957cac9fSHong Zhang break; 1696d71ae5a4SJacob Faibussowitsch default: 1697d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 16983a40ed3dSBarry Smith } 16993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1700c74985f6SBarry Smith } 1701c74985f6SBarry Smith 1702d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1703d71ae5a4SJacob Faibussowitsch { 1704154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 170587828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1706d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1707d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1708b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 170939e00950SLois Curfman McInnes 17103a40ed3dSBarry Smith PetscFunctionBegin; 171128b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17127a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17137a0afa10SBarry Smith 171470f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17157a0afa10SBarry Smith /* 17167a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17177a0afa10SBarry Smith */ 17187a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1719b1d57f15SBarry Smith PetscInt max = 1, tmp; 1720d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17217a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17222205254eSKarl Rupp if (max < tmp) max = tmp; 17237a0afa10SBarry Smith } 17249566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17257a0afa10SBarry Smith } 17267a0afa10SBarry Smith 1727aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1728abc0e9e4SLois Curfman McInnes lrow = row - rstart; 172939e00950SLois Curfman McInnes 17309371c9d4SSatish Balay pvA = &vworkA; 17319371c9d4SSatish Balay pcA = &cworkA; 17329371c9d4SSatish Balay pvB = &vworkB; 17339371c9d4SSatish Balay pcB = &cworkB; 17349371c9d4SSatish Balay if (!v) { 17359371c9d4SSatish Balay pvA = NULL; 17369371c9d4SSatish Balay pvB = NULL; 17379371c9d4SSatish Balay } 17389371c9d4SSatish Balay if (!idx) { 17399371c9d4SSatish Balay pcA = NULL; 17409371c9d4SSatish Balay if (!v) pcB = NULL; 17419371c9d4SSatish Balay } 17429566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17439566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1744154123eaSLois Curfman McInnes nztot = nzA + nzB; 1745154123eaSLois Curfman McInnes 174670f0671dSBarry Smith cmap = mat->garray; 1747154123eaSLois Curfman McInnes if (v || idx) { 1748154123eaSLois Curfman McInnes if (nztot) { 1749154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1750b1d57f15SBarry Smith PetscInt imark = -1; 1751154123eaSLois Curfman McInnes if (v) { 175270f0671dSBarry Smith *v = v_p = mat->rowvalues; 175339e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 175470f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1755154123eaSLois Curfman McInnes else break; 1756154123eaSLois Curfman McInnes } 1757154123eaSLois Curfman McInnes imark = i; 175870f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 175970f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1760154123eaSLois Curfman McInnes } 1761154123eaSLois Curfman McInnes if (idx) { 176270f0671dSBarry Smith *idx = idx_p = mat->rowindices; 176370f0671dSBarry Smith if (imark > -1) { 1764ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 176570f0671dSBarry Smith } else { 1766154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 176770f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1768154123eaSLois Curfman McInnes else break; 1769154123eaSLois Curfman McInnes } 1770154123eaSLois Curfman McInnes imark = i; 177170f0671dSBarry Smith } 177270f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 177370f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 177439e00950SLois Curfman McInnes } 17753f97c4b0SBarry Smith } else { 1776f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1777f4259b30SLisandro Dalcin if (v) *v = NULL; 17781ca473b0SSatish Balay } 1779154123eaSLois Curfman McInnes } 178039e00950SLois Curfman McInnes *nz = nztot; 17819566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17829566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 178439e00950SLois Curfman McInnes } 178539e00950SLois Curfman McInnes 1786d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1787d71ae5a4SJacob Faibussowitsch { 17887a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 17893a40ed3dSBarry Smith 17903a40ed3dSBarry Smith PetscFunctionBegin; 179128b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 17927a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 17933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179439e00950SLois Curfman McInnes } 179539e00950SLois Curfman McInnes 1796ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1797d71ae5a4SJacob Faibussowitsch { 1798855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1799ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1800d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1801329f5518SBarry Smith PetscReal sum = 0.0; 1802fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 18036497c311SBarry Smith PetscMPIInt iN; 180404ca555eSLois Curfman McInnes 18053a40ed3dSBarry Smith PetscFunctionBegin; 180617699dbbSLois Curfman McInnes if (aij->size == 1) { 18079566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 180837fa93a5SLois Curfman McInnes } else { 18099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 181104ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1812fff043a9SJunchao Zhang v = amata; 181304ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18149371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18159371c9d4SSatish Balay v++; 181604ca555eSLois Curfman McInnes } 1817fff043a9SJunchao Zhang v = bmata; 181804ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18199371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18209371c9d4SSatish Balay v++; 182104ca555eSLois Curfman McInnes } 18221c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18238f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18249566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18253a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1826329f5518SBarry Smith PetscReal *tmp, *tmp2; 1827b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18289566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 18299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2)); 183004ca555eSLois Curfman McInnes *norm = 0.0; 18319371c9d4SSatish Balay v = amata; 18329371c9d4SSatish Balay jj = amat->j; 183304ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18349371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18359371c9d4SSatish Balay v++; 183604ca555eSLois Curfman McInnes } 18379371c9d4SSatish Balay v = bmata; 18389371c9d4SSatish Balay jj = bmat->j; 183904ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18409371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18419371c9d4SSatish Balay v++; 184204ca555eSLois Curfman McInnes } 18436497c311SBarry Smith PetscCall(PetscMPIIntCast(mat->cmap->N, &iN)); 18446497c311SBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1845d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 184604ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 184704ca555eSLois Curfman McInnes } 18489566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18499566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 18509566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18513a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1852329f5518SBarry Smith PetscReal ntemp = 0.0; 1853d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18548e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 185504ca555eSLois Curfman McInnes sum = 0.0; 185604ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18579371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18589371c9d4SSatish Balay v++; 185904ca555eSLois Curfman McInnes } 18608e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186104ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18629371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18639371c9d4SSatish Balay v++; 186404ca555eSLois Curfman McInnes } 1865515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 186604ca555eSLois Curfman McInnes } 18671c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18689566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1869ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18719566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187237fa93a5SLois Curfman McInnes } 18733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1874855ac2c5SLois Curfman McInnes } 1875855ac2c5SLois Curfman McInnes 1876ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1877d71ae5a4SJacob Faibussowitsch { 1878a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1879a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1880071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1881071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1882a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1883ce496241SStefano Zampini const MatScalar *pbv, *bv; 1884b7c46309SBarry Smith 18853a40ed3dSBarry Smith PetscFunctionBegin; 18867fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18879371c9d4SSatish Balay ma = A->rmap->n; 18889371c9d4SSatish Balay na = A->cmap->n; 18899371c9d4SSatish Balay mb = a->B->rmap->n; 18909371c9d4SSatish Balay nb = a->B->cmap->n; 18919371c9d4SSatish Balay ai = Aloc->i; 18929371c9d4SSatish Balay aj = Aloc->j; 18939371c9d4SSatish Balay bi = Bloc->i; 18949371c9d4SSatish Balay bj = Bloc->j; 1895fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 189680bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 189780bcc5a1SJed Brown PetscSFNode *oloc; 1898713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 189980bcc5a1SJed Brown 19009566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190180bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19029566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1903cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 190480bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19059566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 190680bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 190780bcc5a1SJed Brown /* map those to global */ 19089566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19099566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19109566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19119566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191257168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 191357168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19149566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1915d4bb536fSBarry Smith 19169566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19189566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19199566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19209566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19219566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1922fc4dec0aSBarry Smith } else { 1923fc4dec0aSBarry Smith B = *matout; 19249566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1925fc4dec0aSBarry Smith } 1926b7c46309SBarry Smith 1927f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1928a8661f62Sandi selinger A_diag = a->A; 1929a8661f62Sandi selinger B_diag = &b->A; 1930a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1931a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1932a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1933a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1934f79cb1a0Sandi selinger 1935f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1936ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1937f79cb1a0Sandi selinger 19384cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1939a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19407fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19419566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1942f79cb1a0Sandi selinger 1943b7c46309SBarry Smith /* copy over the B part */ 19449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1946ce496241SStefano Zampini pbv = bv; 1947d0f46423SBarry Smith row = A->rmap->rstart; 19482205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 194961a2fbbaSHong Zhang cols_tmp = cols; 1950da668accSHong Zhang for (i = 0; i < mb; i++) { 1951da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19529566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19532205254eSKarl Rupp row++; 1954720a2405SPierre Jolivet if (pbv) pbv += ncol; 1955720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1956b7c46309SBarry Smith } 19579566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1959fc73b1b3SBarry Smith 19609566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19619566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1962cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19630de55854SLois Curfman McInnes *matout = B; 19640de55854SLois Curfman McInnes } else { 19659566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19660de55854SLois Curfman McInnes } 19673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1968b7c46309SBarry Smith } 1969b7c46309SBarry Smith 1970ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1971d71ae5a4SJacob Faibussowitsch { 19724b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19734b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1974b1d57f15SBarry Smith PetscInt s1, s2, s3; 1975a008b906SSatish Balay 19763a40ed3dSBarry Smith PetscFunctionBegin; 19779566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19784b967eb1SSatish Balay if (rr) { 19799566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198008401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19814b967eb1SSatish Balay /* Overlap communication with computation. */ 19829566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1983a008b906SSatish Balay } 19844b967eb1SSatish Balay if (ll) { 19859566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 198608401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1987dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19884b967eb1SSatish Balay } 19894b967eb1SSatish Balay /* scale the diagonal block */ 1990dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19914b967eb1SSatish Balay 19924b967eb1SSatish Balay if (rr) { 19934b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 19949566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1995dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 19964b967eb1SSatish Balay } 19973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1998a008b906SSatish Balay } 1999a008b906SSatish Balay 2000ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2001d71ae5a4SJacob Faibussowitsch { 2002bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20033a40ed3dSBarry Smith 20043a40ed3dSBarry Smith PetscFunctionBegin; 20059566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2007bb5a7306SBarry Smith } 2008bb5a7306SBarry Smith 2009ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2010d71ae5a4SJacob Faibussowitsch { 2011d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2012d4bb536fSBarry Smith Mat a, b, c, d; 2013ace3abfcSBarry Smith PetscBool flg; 2014d4bb536fSBarry Smith 20153a40ed3dSBarry Smith PetscFunctionBegin; 20169371c9d4SSatish Balay a = matA->A; 20179371c9d4SSatish Balay b = matA->B; 20189371c9d4SSatish Balay c = matB->A; 20199371c9d4SSatish Balay d = matB->B; 2020d4bb536fSBarry Smith 20219566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202248a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 20231c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2025d4bb536fSBarry Smith } 2026d4bb536fSBarry Smith 2027ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2028d71ae5a4SJacob Faibussowitsch { 2029cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2030cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2031cb5b572fSBarry Smith 2032cb5b572fSBarry Smith PetscFunctionBegin; 203333f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 203433f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2035cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2036cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2037cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2038cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2039cb5b572fSBarry Smith then copying the submatrices */ 20409566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2041cb5b572fSBarry Smith } else { 20429566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20439566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2044cb5b572fSBarry Smith } 20459566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2047cb5b572fSBarry Smith } 2048cb5b572fSBarry Smith 2049001ddc4fSHong Zhang /* 2050001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2051001ddc4fSHong Zhang have different nonzero structure. 2052001ddc4fSHong Zhang */ 2053d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2054d71ae5a4SJacob Faibussowitsch { 2055001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 205695b7e79eSJed Brown 205795b7e79eSJed Brown PetscFunctionBegin; 205895b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 205995b7e79eSJed Brown for (i = 0; i < m; i++) { 20608e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2061001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2062001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 206395b7e79eSJed Brown nnz[i] = 0; 206495b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2065001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2066001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 206795b7e79eSJed Brown nnz[i]++; 206895b7e79eSJed Brown } 206995b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207095b7e79eSJed Brown } 20713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207295b7e79eSJed Brown } 207395b7e79eSJed Brown 2074001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2075d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2076d71ae5a4SJacob Faibussowitsch { 2077001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2078001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2079001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2080001ddc4fSHong Zhang 2081001ddc4fSHong Zhang PetscFunctionBegin; 20829566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2084001ddc4fSHong Zhang } 2085001ddc4fSHong Zhang 2086ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2087d71ae5a4SJacob Faibussowitsch { 2088ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2089ac90fabeSBarry Smith 2090ac90fabeSBarry Smith PetscFunctionBegin; 2091ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20929566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 20939566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2094ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 20959566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2096ac90fabeSBarry Smith } else { 20979f5f6813SShri Abhyankar Mat B; 20989f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2099d9d719b4SStefano Zampini 21009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21029566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21039566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21049566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21059566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21069566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21079566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21089566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21099566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21109566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21119566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21129566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2113ac90fabeSBarry Smith } 21143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2115ac90fabeSBarry Smith } 2116ac90fabeSBarry Smith 21172726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2118354c94deSBarry Smith 2119ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2120d71ae5a4SJacob Faibussowitsch { 21215f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21225f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2123354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2124354c94deSBarry Smith 21259566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21269566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21275f80ce2aSJacob Faibussowitsch } 21283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2129354c94deSBarry Smith } 2130354c94deSBarry Smith 2131ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2132d71ae5a4SJacob Faibussowitsch { 213399cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 213499cafbc1SBarry Smith 213599cafbc1SBarry Smith PetscFunctionBegin; 21369566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21379566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 213999cafbc1SBarry Smith } 214099cafbc1SBarry Smith 2141ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2142d71ae5a4SJacob Faibussowitsch { 214399cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214499cafbc1SBarry Smith 214599cafbc1SBarry Smith PetscFunctionBegin; 21469566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21479566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214999cafbc1SBarry Smith } 215099cafbc1SBarry Smith 2151ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2152d71ae5a4SJacob Faibussowitsch { 2153c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2154475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 2155475b8b61SHong Zhang PetscScalar *va, *vv; 2156475b8b61SHong Zhang Vec vB, vA; 2157475b8b61SHong Zhang const PetscScalar *vb; 2158c91732d9SHong Zhang 2159c91732d9SHong Zhang PetscFunctionBegin; 2160c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21619566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2162475b8b61SHong Zhang 21639566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 2164c91732d9SHong Zhang if (idx) { 2165475b8b61SHong Zhang for (i = 0; i < m; i++) { 2166d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2167c91732d9SHong Zhang } 2168c91732d9SHong Zhang } 2169c91732d9SHong Zhang 2170c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21729566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2173c91732d9SHong Zhang 21749566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21759566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2176475b8b61SHong Zhang for (i = 0; i < m; i++) { 2177c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2178475b8b61SHong Zhang vv[i] = vb[i]; 2179c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2180475b8b61SHong Zhang } else { 2181475b8b61SHong Zhang vv[i] = va[i]; 21829371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2183c91732d9SHong Zhang } 2184c91732d9SHong Zhang } 21859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 21869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 21879566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21889566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21899566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21909566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2192c91732d9SHong Zhang } 2193c91732d9SHong Zhang 2194eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2195eede4a3fSMark Adams { 2196eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2197eede4a3fSMark Adams Vec vB, vA; 2198eede4a3fSMark Adams 2199eede4a3fSMark Adams PetscFunctionBegin; 2200c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2201eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2202c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2203eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2204eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2205eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2206eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2207eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2208eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2209eede4a3fSMark Adams } 2210eede4a3fSMark Adams 2211ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2212d71ae5a4SJacob Faibussowitsch { 2213f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2214f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2215f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2216f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2217f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2218f07e67edSHong Zhang Vec diagV, offdiagV; 2219ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2220ce496241SStefano Zampini const PetscScalar *ba, *bav; 2221f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2222f07e67edSHong Zhang Mat B = mat->B; 2223f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2224c87e5d42SMatthew Knepley 2225c87e5d42SMatthew Knepley PetscFunctionBegin; 2226f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2227f07e67edSHong Zhang if (A->cmap->N == n) { 22289566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22299566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22309566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22319566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22329566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2234f07e67edSHong Zhang } else if (n == 0) { 2235f07e67edSHong Zhang if (m) { 22369566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22379371c9d4SSatish Balay for (r = 0; r < m; r++) { 22389371c9d4SSatish Balay a[r] = 0.0; 22399371c9d4SSatish Balay if (idx) idx[r] = -1; 22409371c9d4SSatish Balay } 22419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2242f07e67edSHong Zhang } 22433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2244f07e67edSHong Zhang } 2245f07e67edSHong Zhang 22469566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22479566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22489566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22499566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2250f07e67edSHong Zhang 2251f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2253ce496241SStefano Zampini ba = bav; 2254f07e67edSHong Zhang bi = b->i; 2255f07e67edSHong Zhang bj = b->j; 22569566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2257f07e67edSHong Zhang for (r = 0; r < m; r++) { 2258f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2259f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22609371c9d4SSatish Balay offdiagA[r] = *ba; 22619371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2262f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2263f07e67edSHong Zhang offdiagA[r] = 0.0; 2264f07e67edSHong Zhang 2265f07e67edSHong Zhang /* Find first hole in the cmap */ 2266f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2267f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2268f07e67edSHong Zhang if (col > j && j < cstart) { 2269f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2270f07e67edSHong Zhang break; 2271f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2272f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2273f07e67edSHong Zhang break; 2274f07e67edSHong Zhang } 2275f07e67edSHong Zhang } 22764e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2277f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2278f07e67edSHong Zhang if (ncols == 0) { 2279f07e67edSHong Zhang if (cstart) { 2280f07e67edSHong Zhang offdiagIdx[r] = 0; 2281f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2282f07e67edSHong Zhang } else { /* ncols > 0 */ 2283f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2284f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2285f07e67edSHong Zhang } 2286f07e67edSHong Zhang } 2287f07e67edSHong Zhang } 2288f07e67edSHong Zhang 2289f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22909371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22919371c9d4SSatish Balay offdiagA[r] = *ba; 22929371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 22939371c9d4SSatish Balay } 22949371c9d4SSatish Balay ba++; 22959371c9d4SSatish Balay bj++; 2296f07e67edSHong Zhang } 2297f07e67edSHong Zhang } 2298f07e67edSHong Zhang 22999566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23009566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2301f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2302f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2303f07e67edSHong Zhang a[r] = diagA[r]; 2304f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2305f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2306f07e67edSHong Zhang a[r] = diagA[r]; 2307c87e5d42SMatthew Knepley if (idx) { 2308f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2309f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2310f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2311f07e67edSHong Zhang } 2312f07e67edSHong Zhang } else { 2313f07e67edSHong Zhang a[r] = offdiagA[r]; 2314f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2315c87e5d42SMatthew Knepley } 2316c87e5d42SMatthew Knepley } 23179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23199566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23209566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23239566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2325c87e5d42SMatthew Knepley } 2326c87e5d42SMatthew Knepley 2327ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2328d71ae5a4SJacob Faibussowitsch { 232903bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2330fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2331fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233203bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 233303bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 233403bc72f1SMatthew Knepley Vec diagV, offdiagV; 2335ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2336ce496241SStefano Zampini const PetscScalar *ba, *bav; 2337fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2338fa213d2fSHong Zhang Mat B = mat->B; 2339fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234003bc72f1SMatthew Knepley 234103bc72f1SMatthew Knepley PetscFunctionBegin; 2342fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2343fa213d2fSHong Zhang if (A->cmap->N == n) { 23449566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23459566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23469566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23479566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2350fa213d2fSHong Zhang } else if (n == 0) { 2351fa213d2fSHong Zhang if (m) { 23529566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23539371c9d4SSatish Balay for (r = 0; r < m; r++) { 23549371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23559371c9d4SSatish Balay if (idx) idx[r] = -1; 23569371c9d4SSatish Balay } 23579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2358fa213d2fSHong Zhang } 23593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2360fa213d2fSHong Zhang } 2361fa213d2fSHong Zhang 23629566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23639566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23649566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23659566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2366fa213d2fSHong Zhang 2367fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2369ce496241SStefano Zampini ba = bav; 2370fa213d2fSHong Zhang bi = b->i; 2371fa213d2fSHong Zhang bj = b->j; 23729566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2373fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2374fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2375fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23769371c9d4SSatish Balay offdiagA[r] = *ba; 23779371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2378fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2379fa213d2fSHong Zhang offdiagA[r] = 0.0; 2380fa213d2fSHong Zhang 2381fa213d2fSHong Zhang /* Find first hole in the cmap */ 2382fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2383fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2384fa213d2fSHong Zhang if (col > j && j < cstart) { 2385fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2386fa213d2fSHong Zhang break; 2387fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2388fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2389fa213d2fSHong Zhang break; 2390fa213d2fSHong Zhang } 2391fa213d2fSHong Zhang } 23924e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2393fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2394fa213d2fSHong Zhang if (ncols == 0) { 2395fa213d2fSHong Zhang if (cstart) { 2396fa213d2fSHong Zhang offdiagIdx[r] = 0; 2397fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2398fa213d2fSHong Zhang } else { /* ncols > 0 */ 2399fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2400fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2401fa213d2fSHong Zhang } 2402fa213d2fSHong Zhang } 2403fa213d2fSHong Zhang } 2404fa213d2fSHong Zhang 2405fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24069371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24079371c9d4SSatish Balay offdiagA[r] = *ba; 24089371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24099371c9d4SSatish Balay } 24109371c9d4SSatish Balay ba++; 24119371c9d4SSatish Balay bj++; 2412fa213d2fSHong Zhang } 2413fa213d2fSHong Zhang } 2414fa213d2fSHong Zhang 24159566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24169566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2417fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2418fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 241903bc72f1SMatthew Knepley a[r] = diagA[r]; 2420fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2421fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2422fa213d2fSHong Zhang a[r] = diagA[r]; 2423fa213d2fSHong Zhang if (idx) { 2424fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 242503bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2426fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2427fa213d2fSHong Zhang } 242803bc72f1SMatthew Knepley } else { 242903bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2430fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243103bc72f1SMatthew Knepley } 243203bc72f1SMatthew Knepley } 24339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24369566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24379566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24399566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244103bc72f1SMatthew Knepley } 244203bc72f1SMatthew Knepley 2443ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2444d71ae5a4SJacob Faibussowitsch { 2445c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24461a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24471a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2448c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2449c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2450c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2451ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2452ce496241SStefano Zampini const PetscScalar *ba, *bav; 24531a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24541a254869SHong Zhang Mat B = mat->B; 24551a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2456c87e5d42SMatthew Knepley 2457c87e5d42SMatthew Knepley PetscFunctionBegin; 24581a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24591a254869SHong Zhang if (A->cmap->N == n) { 24609566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24619566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24629566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24639566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24661a254869SHong Zhang } else if (n == 0) { 24671a254869SHong Zhang if (m) { 24689566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24699371c9d4SSatish Balay for (r = 0; r < m; r++) { 24709371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24719371c9d4SSatish Balay if (idx) idx[r] = -1; 24729371c9d4SSatish Balay } 24739566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24741a254869SHong Zhang } 24753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24761a254869SHong Zhang } 24771a254869SHong Zhang 24789566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24799566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24809566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24819566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24821a254869SHong Zhang 24831a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2485ce496241SStefano Zampini ba = bav; 24861a254869SHong Zhang bi = b->i; 24871a254869SHong Zhang bj = b->j; 24889566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24891a254869SHong Zhang for (r = 0; r < m; r++) { 24901a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24911a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24929371c9d4SSatish Balay offdiagA[r] = *ba; 24939371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 24941a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 24951a254869SHong Zhang offdiagA[r] = 0.0; 24961a254869SHong Zhang 24971a254869SHong Zhang /* Find first hole in the cmap */ 24981a254869SHong Zhang for (j = 0; j < ncols; j++) { 24991a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25001a254869SHong Zhang if (col > j && j < cstart) { 25011a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25021a254869SHong Zhang break; 25031a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25041a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25051a254869SHong Zhang break; 25061a254869SHong Zhang } 25071a254869SHong Zhang } 25084e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25091a254869SHong Zhang /* a hole is outside compressed Bcols */ 25101a254869SHong Zhang if (ncols == 0) { 25111a254869SHong Zhang if (cstart) { 25121a254869SHong Zhang offdiagIdx[r] = 0; 25131a254869SHong Zhang } else offdiagIdx[r] = cend; 25141a254869SHong Zhang } else { /* ncols > 0 */ 25151a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25161a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25171a254869SHong Zhang } 25181a254869SHong Zhang } 25191a254869SHong Zhang } 25201a254869SHong Zhang 25211a254869SHong Zhang for (j = 0; j < ncols; j++) { 25229371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25239371c9d4SSatish Balay offdiagA[r] = *ba; 25249371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25259371c9d4SSatish Balay } 25269371c9d4SSatish Balay ba++; 25279371c9d4SSatish Balay bj++; 25281a254869SHong Zhang } 25291a254869SHong Zhang } 25301a254869SHong Zhang 25319566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25329566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25331a254869SHong Zhang for (r = 0; r < m; ++r) { 25341a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2535c87e5d42SMatthew Knepley a[r] = diagA[r]; 25361a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25371a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25381a254869SHong Zhang a[r] = diagA[r]; 25391a254869SHong Zhang if (idx) { 25401a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2541c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25421a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25431a254869SHong Zhang } 2544c87e5d42SMatthew Knepley } else { 2545c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25461a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2547c87e5d42SMatthew Knepley } 2548c87e5d42SMatthew Knepley } 25499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25509566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25559566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2557c87e5d42SMatthew Knepley } 2558c87e5d42SMatthew Knepley 2559d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2560d71ae5a4SJacob Faibussowitsch { 2561f6d58c54SBarry Smith Mat *dummy; 25625494a064SHong Zhang 25635494a064SHong Zhang PetscFunctionBegin; 25649566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2565f6d58c54SBarry Smith *newmat = *dummy; 25669566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25685494a064SHong Zhang } 25695494a064SHong Zhang 2570ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2571d71ae5a4SJacob Faibussowitsch { 2572bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2573bbead8a2SBarry Smith 2574bbead8a2SBarry Smith PetscFunctionBegin; 25759566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25767b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2578bbead8a2SBarry Smith } 2579bbead8a2SBarry Smith 2580d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2581d71ae5a4SJacob Faibussowitsch { 258273a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 258373a71a0fSBarry Smith 258473a71a0fSBarry Smith PetscFunctionBegin; 258508401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25869566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2587679944adSJunchao Zhang if (x->assembled) { 25889566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2589679944adSJunchao Zhang } else { 25909566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2591679944adSJunchao Zhang } 25929566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 25939566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 25943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 259573a71a0fSBarry Smith } 2596bbead8a2SBarry Smith 2597ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2598d71ae5a4SJacob Faibussowitsch { 2599b1b1104fSBarry Smith PetscFunctionBegin; 2600b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2601b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2603b1b1104fSBarry Smith } 2604b1b1104fSBarry Smith 2605b1b1104fSBarry Smith /*@ 2606f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2607f2afee66SBarry Smith 26082ef1f0ffSBarry Smith Not Collective 2609f2afee66SBarry Smith 2610f2afee66SBarry Smith Input Parameter: 2611f2afee66SBarry Smith . A - the matrix 2612f2afee66SBarry Smith 2613f2afee66SBarry Smith Output Parameter: 2614f2afee66SBarry Smith . nz - the number of nonzeros 2615f2afee66SBarry Smith 2616f2afee66SBarry Smith Level: advanced 2617f2afee66SBarry Smith 2618fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2619f2afee66SBarry Smith @*/ 2620d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2621d71ae5a4SJacob Faibussowitsch { 2622f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2623f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2624dfebb78cSStefano Zampini PetscBool isaij; 2625f2afee66SBarry Smith 2626f2afee66SBarry Smith PetscFunctionBegin; 2627dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2628dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2629f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2631f2afee66SBarry Smith } 2632f2afee66SBarry Smith 2633f2afee66SBarry Smith /*@ 2634b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2635b1b1104fSBarry Smith 2636c3339decSBarry Smith Collective 2637b1b1104fSBarry Smith 2638b1b1104fSBarry Smith Input Parameters: 2639b1b1104fSBarry Smith + A - the matrix 264011a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2641b1b1104fSBarry Smith 264296a0c994SBarry Smith Level: advanced 264396a0c994SBarry Smith 2644fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2645b1b1104fSBarry Smith @*/ 2646d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2647d71ae5a4SJacob Faibussowitsch { 2648b1b1104fSBarry Smith PetscFunctionBegin; 2649cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2651b1b1104fSBarry Smith } 2652b1b1104fSBarry Smith 2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2654d71ae5a4SJacob Faibussowitsch { 2655b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2656b1b1104fSBarry Smith 2657b1b1104fSBarry Smith PetscFunctionBegin; 2658d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2659b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26609566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26611baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2662d0609cedSBarry Smith PetscOptionsHeadEnd(); 26633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2664b1b1104fSBarry Smith } 2665b1b1104fSBarry Smith 2666ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2667d71ae5a4SJacob Faibussowitsch { 26687d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2669c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26707d68702bSBarry Smith 26717d68702bSBarry Smith PetscFunctionBegin; 2672c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26739566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26745519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2675b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2677b83222d8SBarry Smith aij->nonew = nonew; 26787d68702bSBarry Smith } 26799566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26817d68702bSBarry Smith } 26827d68702bSBarry Smith 2683ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2684d71ae5a4SJacob Faibussowitsch { 26853b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26863b49f96aSBarry Smith 26873b49f96aSBarry Smith PetscFunctionBegin; 268808401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26899566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26903b49f96aSBarry Smith if (d) { 26913b49f96aSBarry Smith PetscInt rstart; 26929566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 26933b49f96aSBarry Smith *d += rstart; 26943b49f96aSBarry Smith } 26953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26963b49f96aSBarry Smith } 26973b49f96aSBarry Smith 2698ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2699d71ae5a4SJacob Faibussowitsch { 2700a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2701a8ee9fb5SBarry Smith 2702a8ee9fb5SBarry Smith PetscFunctionBegin; 27039566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2705a8ee9fb5SBarry Smith } 27063b49f96aSBarry Smith 270758c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2708dec0b466SHong Zhang { 2709dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2710dec0b466SHong Zhang 2711dec0b466SHong Zhang PetscFunctionBegin; 271258c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 271358c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2715dec0b466SHong Zhang } 2716dec0b466SHong Zhang 2717cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2718cda55fadSBarry Smith MatGetRow_MPIAIJ, 2719cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2720cda55fadSBarry Smith MatMult_MPIAIJ, 272197304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27227c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27237c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2724f4259b30SLisandro Dalcin NULL, 2725f4259b30SLisandro Dalcin NULL, 2726f4259b30SLisandro Dalcin NULL, 2727f4259b30SLisandro Dalcin /*10*/ NULL, 2728f4259b30SLisandro Dalcin NULL, 2729f4259b30SLisandro Dalcin NULL, 273041f059aeSBarry Smith MatSOR_MPIAIJ, 2731b7c46309SBarry Smith MatTranspose_MPIAIJ, 273297304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2733cda55fadSBarry Smith MatEqual_MPIAIJ, 2734cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2735cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2736cda55fadSBarry Smith MatNorm_MPIAIJ, 273797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2738cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2739cda55fadSBarry Smith MatSetOption_MPIAIJ, 2740cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2741d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2742f4259b30SLisandro Dalcin NULL, 2743f4259b30SLisandro Dalcin NULL, 2744f4259b30SLisandro Dalcin NULL, 2745f4259b30SLisandro Dalcin NULL, 274626cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2747f4259b30SLisandro Dalcin NULL, 2748f4259b30SLisandro Dalcin NULL, 2749a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2750f4259b30SLisandro Dalcin NULL, 2751d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2752f4259b30SLisandro Dalcin NULL, 2753f4259b30SLisandro Dalcin NULL, 2754f4259b30SLisandro Dalcin NULL, 2755f4259b30SLisandro Dalcin NULL, 2756d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27577dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2758cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2759cda55fadSBarry Smith MatGetValues_MPIAIJ, 2760cb5b572fSBarry Smith MatCopy_MPIAIJ, 2761d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2762cda55fadSBarry Smith MatScale_MPIAIJ, 27637d68702bSBarry Smith MatShift_MPIAIJ, 276499e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2765564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 276673a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27678a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27688a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2769f4259b30SLisandro Dalcin NULL, 2770f4259b30SLisandro Dalcin NULL, 277193dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2772f4259b30SLisandro Dalcin NULL, 2773cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 277472e6a0cfSJed Brown MatPermute_MPIAIJ, 2775f4259b30SLisandro Dalcin NULL, 27767dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2777e03a110bSBarry Smith MatDestroy_MPIAIJ, 2778e03a110bSBarry Smith MatView_MPIAIJ, 2779f4259b30SLisandro Dalcin NULL, 2780f4259b30SLisandro Dalcin NULL, 2781f4259b30SLisandro Dalcin /*64*/ NULL, 2782f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2783f4259b30SLisandro Dalcin NULL, 2784f4259b30SLisandro Dalcin NULL, 2785f4259b30SLisandro Dalcin NULL, 2786d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2787c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2788f4259b30SLisandro Dalcin NULL, 2789f4259b30SLisandro Dalcin NULL, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 27923acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2793b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2794f4259b30SLisandro Dalcin NULL, 2795f4259b30SLisandro Dalcin NULL, 2796f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2797f4259b30SLisandro Dalcin /*80*/ NULL, 2798f4259b30SLisandro Dalcin NULL, 2799f4259b30SLisandro Dalcin NULL, 28005bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 28016cff0a6bSPierre Jolivet NULL, 2802f4259b30SLisandro Dalcin NULL, 2803f4259b30SLisandro Dalcin NULL, 2804f4259b30SLisandro Dalcin NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin /*89*/ NULL, 2807f4259b30SLisandro Dalcin NULL, 280826be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2809f4259b30SLisandro Dalcin NULL, 2810f4259b30SLisandro Dalcin NULL, 2811cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2812f4259b30SLisandro Dalcin NULL, 2813f4259b30SLisandro Dalcin NULL, 2814f4259b30SLisandro Dalcin NULL, 2815b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28164222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2817f4259b30SLisandro Dalcin NULL, 2818f4259b30SLisandro Dalcin NULL, 28192fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2820f4259b30SLisandro Dalcin NULL, 2821d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 282299cafbc1SBarry Smith MatRealPart_MPIAIJ, 282369db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2824f4259b30SLisandro Dalcin NULL, 2825f4259b30SLisandro Dalcin NULL, 2826f4259b30SLisandro Dalcin /*109*/ NULL, 2827f4259b30SLisandro Dalcin NULL, 28285494a064SHong Zhang MatGetRowMin_MPIAIJ, 2829f4259b30SLisandro Dalcin NULL, 28303b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2831d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2832f4259b30SLisandro Dalcin NULL, 2833c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2834f4259b30SLisandro Dalcin NULL, 2835f4259b30SLisandro Dalcin NULL, 2836b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2837f4259b30SLisandro Dalcin NULL, 2838f4259b30SLisandro Dalcin NULL, 2839f4259b30SLisandro Dalcin NULL, 2840b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2841f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2842a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2843bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2844a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28457dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2846f4259b30SLisandro Dalcin /*129*/ NULL, 2847f4259b30SLisandro Dalcin NULL, 2848f4259b30SLisandro Dalcin NULL, 2849187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2850f4259b30SLisandro Dalcin NULL, 2851f4259b30SLisandro Dalcin /*134*/ NULL, 2852f4259b30SLisandro Dalcin NULL, 2853f4259b30SLisandro Dalcin NULL, 2854f4259b30SLisandro Dalcin NULL, 2855f4259b30SLisandro Dalcin NULL, 285646533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2857f4259b30SLisandro Dalcin NULL, 2858f4259b30SLisandro Dalcin NULL, 28599c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2860a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28614222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2862f4259b30SLisandro Dalcin /*145*/ NULL, 2863f4259b30SLisandro Dalcin NULL, 286472833a62Smarkadams4 NULL, 286572833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28662d776b49SBarry Smith NULL, 2867dec0b466SHong Zhang /*150*/ NULL, 2868eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28694cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 28704cc2b5b5SPierre Jolivet NULL}; 287136ce4990SBarry Smith 2872ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2873d71ae5a4SJacob Faibussowitsch { 28742e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28752e8a6d31SBarry Smith 28762e8a6d31SBarry Smith PetscFunctionBegin; 28779566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28789566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28802e8a6d31SBarry Smith } 28812e8a6d31SBarry Smith 2882ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2883d71ae5a4SJacob Faibussowitsch { 28842e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28852e8a6d31SBarry Smith 28862e8a6d31SBarry Smith PetscFunctionBegin; 28879566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28889566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28902e8a6d31SBarry Smith } 28918a729477SBarry Smith 2892d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2893d71ae5a4SJacob Faibussowitsch { 2894ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 28955d2a9ed1SStefano Zampini PetscMPIInt size; 2896a23d5eceSKris Buschelman 2897a23d5eceSKris Buschelman PetscFunctionBegin; 2898ad79cf63SBarry Smith if (B->hash_active) { 2899aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2900ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2901ad79cf63SBarry Smith } 29029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2904899cda47SBarry Smith 2905cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2906eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2907cb7b82ddSBarry Smith #else 29089566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2909cb7b82ddSBarry Smith #endif 29109566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29119566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29129566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2913cb7b82ddSBarry Smith 29149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2915c508b908SBarry Smith 2916c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29179566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29189566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29209566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29219566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2922c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2923cb7b82ddSBarry Smith 2924c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2925ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29269566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29289566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29299566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2930c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2931899cda47SBarry Smith 29329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2934526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2935cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 293615001458SStefano Zampini B->assembled = PETSC_FALSE; 29373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2938a23d5eceSKris Buschelman } 2939a23d5eceSKris Buschelman 2940ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2941d71ae5a4SJacob Faibussowitsch { 2942ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2943846b4da1SFande Kong 2944846b4da1SFande Kong PetscFunctionBegin; 2945846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29469566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2948846b4da1SFande Kong 2949846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2950eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2951846b4da1SFande Kong #else 29529566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2953846b4da1SFande Kong #endif 29549566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29559566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29569566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2957846b4da1SFande Kong 29589566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29599566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2960846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2961846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2962846b4da1SFande Kong B->assembled = PETSC_FALSE; 29633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2964846b4da1SFande Kong } 2965846b4da1SFande Kong 2966d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2967d71ae5a4SJacob Faibussowitsch { 2968d6dfbf8fSBarry Smith Mat mat; 2969416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2970d6dfbf8fSBarry Smith 29713a40ed3dSBarry Smith PetscFunctionBegin; 2972f4259b30SLisandro Dalcin *newmat = NULL; 29739566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29749566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29769566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2977273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2978e1b6402fSHong Zhang 2979d5f3da31SBarry Smith mat->factortype = matin->factortype; 2980501880eeSStefano Zampini mat->assembled = matin->assembled; 2981e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2982d6dfbf8fSBarry Smith 298317699dbbSLois Curfman McInnes a->size = oldmat->size; 298417699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2985e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2986e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2987501880eeSStefano Zampini a->rowindices = NULL; 2988501880eeSStefano Zampini a->rowvalues = NULL; 2989bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2990d6dfbf8fSBarry Smith 29919566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29929566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2993420957c1SBarry Smith if (matin->hash_active) { 2994420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2995420957c1SBarry Smith } else { 2996420957c1SBarry Smith mat->preallocated = matin->preallocated; 29972ee70a88SLois Curfman McInnes if (oldmat->colmap) { 2998aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2999eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3000b1fc9764SSatish Balay #else 30019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30029566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3003b1fc9764SSatish Balay #endif 3004501880eeSStefano Zampini } else a->colmap = NULL; 30053f41c07dSBarry Smith if (oldmat->garray) { 3006b1d57f15SBarry Smith PetscInt len; 3007d0f46423SBarry Smith len = oldmat->B->cmap->n; 30089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30099566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3010501880eeSStefano Zampini } else a->garray = NULL; 3011d6dfbf8fSBarry Smith 30120de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30130de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30140de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3015aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3016cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3017cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3018cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3019cff58d65SJunchao Zhang } 30209566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30219566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3022420957c1SBarry Smith } 30239566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30248a729477SBarry Smith *newmat = mat; 30253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30268a729477SBarry Smith } 3027416022c9SBarry Smith 3028d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3029d71ae5a4SJacob Faibussowitsch { 303052f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 303152f91c60SVaclav Hapla 303252f91c60SVaclav Hapla PetscFunctionBegin; 303352f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 303452f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3035c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30369566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30379566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 303952f91c60SVaclav Hapla if (isbinary) { 30409566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 304152f91c60SVaclav Hapla } else if (ishdf5) { 304252f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30439566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 304452f91c60SVaclav Hapla #else 304552f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 304652f91c60SVaclav Hapla #endif 304752f91c60SVaclav Hapla } else { 304898921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 304952f91c60SVaclav Hapla } 30503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 305152f91c60SVaclav Hapla } 305252f91c60SVaclav Hapla 3053d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3054d71ae5a4SJacob Faibussowitsch { 30553ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30563ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30573ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30588fb81238SShri Abhyankar 30598fb81238SShri Abhyankar PetscFunctionBegin; 30609566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30618fb81238SShri Abhyankar 30623ea6fe3dSLisandro Dalcin /* read in matrix header */ 30639566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 306408401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30659371c9d4SSatish Balay M = header[1]; 30669371c9d4SSatish Balay N = header[2]; 30679371c9d4SSatish Balay nz = header[3]; 306808401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 306908401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 307008401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 307108ea439dSMark F. Adams 30723ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30739566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30743ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30753ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30763ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30789566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30798fb81238SShri Abhyankar 30803ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30819566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3082aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30838fb81238SShri Abhyankar 30843ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30859566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30879566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30889371c9d4SSatish Balay rowidxs[0] = 0; 30899371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 3090*1690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 30911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 309208401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 309338b83642SBarry Smith } 309438b83642SBarry Smith 30953ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30969566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 30979566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 30989566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 30993ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31009566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31019566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31029566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31048fb81238SShri Abhyankar } 31058fb81238SShri Abhyankar 31063782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3107ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3108d71ae5a4SJacob Faibussowitsch { 31094aa3045dSJed Brown IS iscol_local; 3110c5e4d11fSDmitry Karpeev PetscBool isstride; 3111c5e4d11fSDmitry Karpeev PetscMPIInt lisstride = 0, gisstride; 31123782ecc7SHong Zhang 31133782ecc7SHong Zhang PetscFunctionBegin; 31143782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31163782ecc7SHong Zhang 3117c5e4d11fSDmitry Karpeev if (isstride) { 3118c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31199566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31209566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31219566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 3122c5e4d11fSDmitry Karpeev if (mstart == start && mlen - mstart == len) lisstride = 1; 3123c5e4d11fSDmitry Karpeev } 31243782ecc7SHong Zhang 31251c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3126c5e4d11fSDmitry Karpeev if (gisstride) { 3127c5e4d11fSDmitry Karpeev PetscInt N; 31289566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31299566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31309566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31319566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3132c5e4d11fSDmitry Karpeev } else { 3133c5bfad50SMark F. Adams PetscInt cbs; 31349566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31359566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31369566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3137b79d0421SJed Brown } 31383782ecc7SHong Zhang 31393782ecc7SHong Zhang *isseq = iscol_local; 31403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3141c5e4d11fSDmitry Karpeev } 31428d2139bdSHong Zhang 3143ddfdf956SHong Zhang /* 31449c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31459c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3146ddfdf956SHong Zhang 3147ddfdf956SHong Zhang Input Parameters: 314827430b45SBarry Smith + mat - matrix 314927430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31509c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 315127430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3152ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 315327430b45SBarry Smith 315427430b45SBarry Smith Output Parameters: 315527430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 315627430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 315727430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 315827430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3159ddfdf956SHong Zhang */ 3160ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[]) 3161d71ae5a4SJacob Faibussowitsch { 3162040216a4SHong Zhang Vec x, cmap; 3163040216a4SHong Zhang const PetscInt *is_idx; 3164040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31659c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3166040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3167040216a4SHong Zhang Mat B = a->B; 3168040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3169a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31708b3fa1f7SHong Zhang MPI_Comm comm; 31713a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31723782ecc7SHong Zhang 31733782ecc7SHong Zhang PetscFunctionBegin; 31749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31768b3fa1f7SHong Zhang 3177ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31789566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31799566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31809566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31819566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31820a351717SHong Zhang 31839c988bcaSHong Zhang /* Get start indices */ 31849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3185ddfdf956SHong Zhang isstart -= ncols; 31869566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3187040216a4SHong Zhang 31889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31899566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31909566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3192ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31938b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3194ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31959c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31968b3fa1f7SHong Zhang } 31979566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 31989566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 31999566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32008b3fa1f7SHong Zhang 32019c988bcaSHong Zhang /* Get iscol_d */ 32029566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32039566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32049566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3205feb78a15SHong Zhang 32069c988bcaSHong Zhang /* Get isrow_d */ 32079566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3208feb78a15SHong Zhang rstart = mat->rmap->rstart; 32099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32119c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32129566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3213feb78a15SHong Zhang 32149566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32159566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32169566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3217feb78a15SHong Zhang 32189c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32199566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32209566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3221ddfdf956SHong Zhang 32229566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 322307250d77SHong Zhang 32249566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32259566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 322664efcef9SHong Zhang 32279c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3228ddfdf956SHong Zhang /* off-process column indices */ 32299c988bcaSHong Zhang count = 0; 32309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3232feb78a15SHong Zhang 32339566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32349566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32358b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3236f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32379c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32381c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32391c645242SHong Zhang count++; 32408b3fa1f7SHong Zhang } 32418b3fa1f7SHong Zhang } 32429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32439566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 324407250d77SHong Zhang 32459566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3246b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3247b6d9b4e0SHong Zhang 32489566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32499c988bcaSHong Zhang *garray = cmap1; 32509c988bcaSHong Zhang 32519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32529566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3255040216a4SHong Zhang } 3256040216a4SHong Zhang 3257b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3258d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3259d71ae5a4SJacob Faibussowitsch { 3260b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32611fd43edeSHong Zhang Mat M = NULL; 32623b00a383SHong Zhang MPI_Comm comm; 3263b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32643b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3265b20e2604SHong Zhang PetscInt n; 32663b00a383SHong Zhang 32673b00a383SHong Zhang PetscFunctionBegin; 32689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32693b00a383SHong Zhang 32703b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3271b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32729566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 327328b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32743b00a383SHong Zhang 32759566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 327628b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32773b00a383SHong Zhang 32789566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 327928b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32803b00a383SHong Zhang 3281b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3282b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32839566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32849566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 328548a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32869566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32879566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32883b00a383SHong Zhang 32893b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 32909c988bcaSHong Zhang const PetscInt *garray; 3291b20e2604SHong Zhang PetscInt BsubN; 32923b00a383SHong Zhang 3293b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32949566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32953b00a383SHong Zhang 3296b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 32979566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 32989566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 32993b00a383SHong Zhang 33009c988bcaSHong Zhang /* Create submatrix M */ 33019566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M)); 33023b00a383SHong Zhang 3303b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3304b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33057cfce09cSHong Zhang 33069566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3307b20e2604SHong Zhang n = asub->B->cmap->N; 3308b20e2604SHong Zhang if (BsubN > n) { 3309c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33107cfce09cSHong Zhang const PetscInt *idx; 33119c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33129566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33137cfce09cSHong Zhang 33149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33157cfce09cSHong Zhang j = 0; 33169566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3317b20e2604SHong Zhang for (i = 0; i < n; i++) { 33187cfce09cSHong Zhang if (j >= BsubN) break; 33199c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33207cfce09cSHong Zhang 33219c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33227cfce09cSHong Zhang idx_new[i] = idx[j++]; 332398921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33247cfce09cSHong Zhang } 33259566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33267cfce09cSHong Zhang 33279566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33289566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33297cfce09cSHong Zhang 3330b20e2604SHong Zhang } else if (BsubN < n) { 333198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3332b20e2604SHong Zhang } 33337cfce09cSHong Zhang 33349566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3335b20e2604SHong Zhang *submat = M; 33363b00a383SHong Zhang 3337e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33389566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33403b00a383SHong Zhang 33419566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33433b00a383SHong Zhang 33449566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33463b00a383SHong Zhang } 33473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33483b00a383SHong Zhang } 33493b00a383SHong Zhang 3350d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3351d71ae5a4SJacob Faibussowitsch { 33521358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33533782ecc7SHong Zhang PetscInt csize; 335418e627e3SHong Zhang PetscInt n, i, j, start, end; 33554a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33563782ecc7SHong Zhang MPI_Comm comm; 33573782ecc7SHong Zhang 33583782ecc7SHong Zhang PetscFunctionBegin; 3359bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3360a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33618f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33629566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3363d5761cdaSHong Zhang if (isrow_d) { 3364d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3365d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3366d5761cdaSHong Zhang } else { 33679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3368d5761cdaSHong Zhang if (iscol_local) { 3369d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3370d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3371d5761cdaSHong Zhang } 3372d5761cdaSHong Zhang } 33738f69fa7bSHong Zhang } else { 3374e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 337518e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33769566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33773782ecc7SHong Zhang if (!n) { 337818e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33793782ecc7SHong Zhang } else { 33809566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33819566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3382ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33838f69fa7bSHong Zhang } 33843782ecc7SHong Zhang 3385e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 338618e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33879566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 338818e627e3SHong Zhang if (!n) { 338918e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 339018e627e3SHong Zhang } else { 33919566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33929566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 339318e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 339418e627e3SHong Zhang } 339518e627e3SHong Zhang 33969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 33971c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 339818e627e3SHong Zhang sameRowDist = tsameDist[0]; 339918e627e3SHong Zhang } 340018e627e3SHong Zhang 340118e627e3SHong Zhang if (sameRowDist) { 3402b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34033b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34049566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3406b20e2604SHong Zhang } else { /* sameRowDist */ 34073b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34081358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34091358a193SHong Zhang PetscBool sorted; 34109566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34119566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34129566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 341308401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34141358a193SHong Zhang 34159566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34161358a193SHong Zhang if (sorted) { 34171358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34189566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34203782ecc7SHong Zhang } 34211358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 342248c0d076SHong Zhang IS iscol_sub; 34239566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 342448c0d076SHong Zhang if (iscol_sub) { 34259566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 342748c0d076SHong Zhang } 34281358a193SHong Zhang } 34291358a193SHong Zhang } 34301358a193SHong Zhang } 34313782ecc7SHong Zhang 3432bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34333782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34349566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 343528b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34363782ecc7SHong Zhang } else { 343748a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34381358a193SHong Zhang } 34393782ecc7SHong Zhang 34409566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34419566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34428f69fa7bSHong Zhang 3443b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34449566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3446b79d0421SJed Brown } 34473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34484aa3045dSJed Brown } 34494aa3045dSJed Brown 3450feb78a15SHong Zhang /*@C 345111a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3452feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3453feb78a15SHong Zhang 3454d083f849SBarry Smith Collective 3455feb78a15SHong Zhang 3456feb78a15SHong Zhang Input Parameters: 3457feb78a15SHong Zhang + comm - MPI communicator 3458feb78a15SHong Zhang . A - "diagonal" portion of matrix 3459b20e2604SHong Zhang . B - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine 34602ef1f0ffSBarry Smith - garray - global index of `B` columns 3461feb78a15SHong Zhang 3462feb78a15SHong Zhang Output Parameter: 34632ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 346427430b45SBarry Smith 3465feb78a15SHong Zhang Level: advanced 3466feb78a15SHong Zhang 3467feb78a15SHong Zhang Notes: 346811a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 346911a5261eSBarry Smith 34702ef1f0ffSBarry Smith `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore. 3471feb78a15SHong Zhang 34721cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3473feb78a15SHong Zhang @*/ 3474d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat) 3475d71ae5a4SJacob Faibussowitsch { 3476feb78a15SHong Zhang Mat_MPIAIJ *maij; 3477e489de8fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data, *bnew; 3478a5348796SHong Zhang PetscInt *oi = b->i, *oj = b->j, i, nz, col; 3479ce496241SStefano Zampini const PetscScalar *oa; 3480e489de8fSHong Zhang Mat Bnew; 3481feb78a15SHong Zhang PetscInt m, n, N; 34824ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3483feb78a15SHong Zhang 3484feb78a15SHong Zhang PetscFunctionBegin; 34859566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 34869566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 348708401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 348837a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3489b6d9b4e0SHong Zhang /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */ 349008401ef6SPierre Jolivet /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */ 3491feb78a15SHong Zhang 3492e489de8fSHong Zhang /* Get global columns of mat */ 34931c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm)); 3494feb78a15SHong Zhang 34959566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N)); 34964ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 34974ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 34984ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 34994ab4d6f4SRichard Tran Mills 350037a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3501feb78a15SHong Zhang maij = (Mat_MPIAIJ *)(*mat)->data; 3502feb78a15SHong Zhang 3503feb78a15SHong Zhang (*mat)->preallocated = PETSC_TRUE; 3504feb78a15SHong Zhang 35059566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35069566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3507feb78a15SHong Zhang 3508e489de8fSHong Zhang /* Set A as diagonal portion of *mat */ 3509feb78a15SHong Zhang maij->A = A; 3510feb78a15SHong Zhang 3511a5348796SHong Zhang nz = oi[m]; 3512a5348796SHong Zhang for (i = 0; i < nz; i++) { 3513a5348796SHong Zhang col = oj[i]; 3514a5348796SHong Zhang oj[i] = garray[col]; 3515feb78a15SHong Zhang } 3516feb78a15SHong Zhang 3517e489de8fSHong Zhang /* Set Bnew as off-diagonal portion of *mat */ 35189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &oa)); 35199566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew)); 35209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &oa)); 3521e489de8fSHong Zhang bnew = (Mat_SeqAIJ *)Bnew->data; 3522e489de8fSHong Zhang bnew->maxnz = b->maxnz; /* allocated nonzeros of B */ 3523e489de8fSHong Zhang maij->B = Bnew; 3524d5761cdaSHong Zhang 352508401ef6SPierre Jolivet PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N); 3526d5761cdaSHong Zhang 3527d5761cdaSHong Zhang b->free_a = PETSC_FALSE; 3528d5761cdaSHong Zhang b->free_ij = PETSC_FALSE; 35299566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 3530d5761cdaSHong Zhang 3531e489de8fSHong Zhang bnew->free_a = PETSC_TRUE; 3532e489de8fSHong Zhang bnew->free_ij = PETSC_TRUE; 3533feb78a15SHong Zhang 3534a5348796SHong Zhang /* condense columns of maij->B */ 35359566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 35369566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 35379566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 35389566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 35399566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3541feb78a15SHong Zhang } 3542feb78a15SHong Zhang 3543ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35444aa3045dSJed Brown 3545d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3546d71ae5a4SJacob Faibussowitsch { 354798b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 354885f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 354998b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35501fd43edeSHong Zhang Mat M, Msub, B = a->B; 355198b658c4SHong Zhang MatScalar *aa; 355200e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3553a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 355498b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 355598b658c4SHong Zhang IS iscol_sub, iscmap; 355698b658c4SHong Zhang const PetscInt *is_idx, *cmap; 355718e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3558a31a438cSHong Zhang MPI_Comm comm; 35597e2c5f70SBarry Smith 3560a0ff6018SBarry Smith PetscFunctionBegin; 35619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3562d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35639566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 356428b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35659566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3566d5761cdaSHong Zhang 35679566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 356828b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3569d5761cdaSHong Zhang 35709566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 357128b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3572d5761cdaSHong Zhang 35739566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3574d5761cdaSHong Zhang 3575d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35763b00a383SHong Zhang PetscBool flg; 35773b00a383SHong Zhang 35789566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35799566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3580bcae8d28SHong Zhang 35813b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3582366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35839566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3584366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 35851c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3586366a327dSHong Zhang if (allcolumns) { 3587366a327dSHong Zhang iscol_sub = iscol_local; 35889566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35899566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3590366a327dSHong Zhang 35913b00a383SHong Zhang } else { 35921358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3593244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35969566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 35978d2139bdSHong Zhang count = 0; 3598a31a438cSHong Zhang k = 0; 3599a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3600a31a438cSHong Zhang j = is_idx[i]; 3601a31a438cSHong Zhang if (j >= cstart && j < cend) { 3602a31a438cSHong Zhang /* diagonal part of mat */ 36038d2139bdSHong Zhang idx[count] = j; 3604366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36054a3daf6eSHong Zhang } else if (Bn) { 3606a31a438cSHong Zhang /* off-diagonal part of mat */ 3607a31a438cSHong Zhang if (j == garray[k]) { 36088d2139bdSHong Zhang idx[count] = j; 3609a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3610a31a438cSHong Zhang } else if (j > garray[k]) { 3611a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3612a31a438cSHong Zhang if (j == garray[k]) { 3613a31a438cSHong Zhang idx[count] = j; 3614a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36158d2139bdSHong Zhang } 36168d2139bdSHong Zhang } 36178d2139bdSHong Zhang } 36188d2139bdSHong Zhang } 36199566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36208d2139bdSHong Zhang 36219566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36229566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36239566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3624b6d9b4e0SHong Zhang 36259566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3626a31a438cSHong Zhang } 36278b3fa1f7SHong Zhang 36283b00a383SHong Zhang /* (3) Create sequential Msub */ 36299566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3630d5761cdaSHong Zhang } 36318d2139bdSHong Zhang 36329566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 363398b658c4SHong Zhang aij = (Mat_SeqAIJ *)(Msub)->data; 363498b658c4SHong Zhang ii = aij->i; 36359566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3636a0ff6018SBarry Smith 3637a0ff6018SBarry Smith /* 3638a0ff6018SBarry Smith m - number of local rows 3639a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3640a0ff6018SBarry Smith rstart - first row in new global matrix generated 3641a0ff6018SBarry Smith */ 36429566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 364398b658c4SHong Zhang 36443b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36453b00a383SHong Zhang /* (4) Create parallel newmat */ 364698b658c4SHong Zhang PetscMPIInt rank, size; 3647bcae8d28SHong Zhang PetscInt csize; 364898b658c4SHong Zhang 36499566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 365100e6dbe6SBarry Smith 3652a0ff6018SBarry Smith /* 365300e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 365400e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3655a0ff6018SBarry Smith */ 365600e6dbe6SBarry Smith 365700e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36589566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36596a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36609566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3661a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3662e2c4fddaSBarry Smith nlocal = m; 36636a6a5d1dSBarry Smith } else { 3664a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3665ab50ec6bSBarry Smith } 3666ab50ec6bSBarry Smith } else { 36676a6a5d1dSBarry Smith nlocal = csize; 36686a6a5d1dSBarry Smith } 36699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 367000e6dbe6SBarry Smith rstart = rend - nlocal; 3671aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 367200e6dbe6SBarry Smith 367300e6dbe6SBarry Smith /* next, compute all the lengths */ 367498b658c4SHong Zhang jj = aij->j; 36759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 367600e6dbe6SBarry Smith olens = dlens + m; 367700e6dbe6SBarry Smith for (i = 0; i < m; i++) { 367800e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 367900e6dbe6SBarry Smith olen = 0; 368000e6dbe6SBarry Smith dlen = 0; 368100e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 368215b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 368300e6dbe6SBarry Smith else dlen++; 368400e6dbe6SBarry Smith jj++; 368500e6dbe6SBarry Smith } 368600e6dbe6SBarry Smith olens[i] = olen; 368700e6dbe6SBarry Smith dlens[i] = dlen; 368800e6dbe6SBarry Smith } 3689b6d9b4e0SHong Zhang 36909566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36919566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 369298b658c4SHong Zhang 36939566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36949566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36959566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36969566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 36979566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 36989566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3699d5761cdaSHong Zhang 3700d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3701a0ff6018SBarry Smith M = *newmat; 37029566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 370308401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37049566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3705c48de900SBarry Smith /* 3706c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3707c48de900SBarry Smith rather than the slower MatSetValues(). 3708c48de900SBarry Smith */ 3709c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3710c48de900SBarry Smith M->assembled = PETSC_FALSE; 3711a0ff6018SBarry Smith } 3712548ecf4dSHong Zhang 37133b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37159566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 371698b658c4SHong Zhang 371798b658c4SHong Zhang jj = aij->j; 37189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3719a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3720a0ff6018SBarry Smith row = rstart + i; 372100e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 372215b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37239566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37249371c9d4SSatish Balay jj += nz; 37259371c9d4SSatish Balay aa += nz; 3726a0ff6018SBarry Smith } 37279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37289566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3729a0ff6018SBarry Smith 37309566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37319566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3732fee21e36SBarry Smith 37339566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 373498b658c4SHong Zhang 373598b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3736fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37373b00a383SHong Zhang *newmat = M; 3738f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37399566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 374098b658c4SHong Zhang 3741f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 374398b658c4SHong Zhang 3744f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3746bcae8d28SHong Zhang 3747bcae8d28SHong Zhang if (iscol_local) { 3748f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37499566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3750bcae8d28SHong Zhang } 375198b658c4SHong Zhang } 37523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3753a0ff6018SBarry Smith } 3754273d9f13SBarry Smith 3755df40acb1SHong Zhang /* 3756df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3757df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3758df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3759df40acb1SHong Zhang 376011a5261eSBarry Smith This requires a sequential iscol with all indices. 3761df40acb1SHong Zhang */ 3762d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3763d71ae5a4SJacob Faibussowitsch { 3764df40acb1SHong Zhang PetscMPIInt rank, size; 3765df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3766df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3767df40acb1SHong Zhang Mat M, Mreuse; 376898b658c4SHong Zhang MatScalar *aa, *vwork; 3769df40acb1SHong Zhang MPI_Comm comm; 3770df40acb1SHong Zhang Mat_SeqAIJ *aij; 37710b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3772df40acb1SHong Zhang 3773df40acb1SHong Zhang PetscFunctionBegin; 37749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3777df40acb1SHong Zhang 37780b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37799566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37809566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37810b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 37821c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37830b27a90eSHong Zhang 3784df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37859566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 378628b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37879566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3788df40acb1SHong Zhang } else { 37899566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3790df40acb1SHong Zhang } 3791df40acb1SHong Zhang 3792df40acb1SHong Zhang /* 3793df40acb1SHong Zhang m - number of local rows 3794df40acb1SHong Zhang n - number of columns (same on all processors) 3795df40acb1SHong Zhang rstart - first row in new global matrix generated 3796df40acb1SHong Zhang */ 37979566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 37989566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3799df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 3800df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3801df40acb1SHong Zhang ii = aij->i; 3802df40acb1SHong Zhang jj = aij->j; 3803df40acb1SHong Zhang 3804df40acb1SHong Zhang /* 3805df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3806df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3807df40acb1SHong Zhang */ 3808df40acb1SHong Zhang 3809df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3810df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38119566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3812df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3813df40acb1SHong Zhang nlocal = m; 3814df40acb1SHong Zhang } else { 3815df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3816df40acb1SHong Zhang } 3817df40acb1SHong Zhang } else { 3818df40acb1SHong Zhang nlocal = csize; 3819df40acb1SHong Zhang } 38209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3821df40acb1SHong Zhang rstart = rend - nlocal; 3822aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3823df40acb1SHong Zhang 3824df40acb1SHong Zhang /* next, compute all the lengths */ 38259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3826df40acb1SHong Zhang olens = dlens + m; 3827df40acb1SHong Zhang for (i = 0; i < m; i++) { 3828df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3829df40acb1SHong Zhang olen = 0; 3830df40acb1SHong Zhang dlen = 0; 3831df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3832df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3833df40acb1SHong Zhang else dlen++; 3834df40acb1SHong Zhang jj++; 3835df40acb1SHong Zhang } 3836df40acb1SHong Zhang olens[i] = olen; 3837df40acb1SHong Zhang dlens[i] = dlen; 3838df40acb1SHong Zhang } 38399566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38419566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38429566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38439566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38449566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3845df40acb1SHong Zhang } else { 3846df40acb1SHong Zhang PetscInt ml, nl; 3847df40acb1SHong Zhang 3848df40acb1SHong Zhang M = *newmat; 38499566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 385008401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38519566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3852df40acb1SHong Zhang /* 3853df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3854df40acb1SHong Zhang rather than the slower MatSetValues(). 3855df40acb1SHong Zhang */ 3856df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3857df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3858df40acb1SHong Zhang } 38599566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 3860df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3861df40acb1SHong Zhang ii = aij->i; 3862df40acb1SHong Zhang jj = aij->j; 38632e5835c6SStefano Zampini 38642e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3866df40acb1SHong Zhang for (i = 0; i < m; i++) { 3867df40acb1SHong Zhang row = rstart + i; 3868df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38699371c9d4SSatish Balay cwork = jj; 38708e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38719371c9d4SSatish Balay vwork = aa; 38728e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38739566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3874df40acb1SHong Zhang } 38759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3876df40acb1SHong Zhang 38779566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38789566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3879df40acb1SHong Zhang *newmat = M; 3880df40acb1SHong Zhang 3881df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3882df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38839566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3885df40acb1SHong Zhang } 38863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3887df40acb1SHong Zhang } 3888df40acb1SHong Zhang 3889ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3890d71ae5a4SJacob Faibussowitsch { 38916a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 38929f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3893ccd8e176SBarry Smith const PetscInt *JJ; 3894eeb24464SBarry Smith PetscBool nooffprocentries; 38956a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3896ccd8e176SBarry Smith 3897ccd8e176SBarry Smith PetscFunctionBegin; 38989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 38999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3900d0f46423SBarry Smith m = B->rmap->n; 3901d0f46423SBarry Smith cstart = B->cmap->rstart; 3902d0f46423SBarry Smith cend = B->cmap->rend; 3903d0f46423SBarry Smith rstart = B->rmap->rstart; 39049f0612e4SBarry Smith irstart = Ii[0]; 3905899cda47SBarry Smith 39069566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3907ccd8e176SBarry Smith 390876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39098f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3910ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39119f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 391208401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 391308401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 391408401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3915ecc77c7aSBarry Smith } 391676bd3646SJed Brown } 3917ecc77c7aSBarry Smith 39188f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3919b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39209f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3921ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3922ccd8e176SBarry Smith d = 0; 39230daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39240daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3925ccd8e176SBarry Smith } 3926ccd8e176SBarry Smith d_nnz[i] = d; 3927ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3928ccd8e176SBarry Smith } 39299566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39309566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3931ccd8e176SBarry Smith 39328f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3933ccd8e176SBarry Smith ii = i + rstart; 39349f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3935ccd8e176SBarry Smith } 3936eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3937eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39389566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39399566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3940eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3941ccd8e176SBarry Smith 39426a3d2595SBarry Smith /* count number of entries below block diagonal */ 39436a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39446a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39456a3d2595SBarry Smith Aij->ld = ld; 39466a3d2595SBarry Smith for (i = 0; i < m; i++) { 39476a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39486a3d2595SBarry Smith j = 0; 3949ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39506a3d2595SBarry Smith ld[i] = j; 3951720a2405SPierre Jolivet if (J) J += nnz; 39526a3d2595SBarry Smith } 39536a3d2595SBarry Smith 39549566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3956ccd8e176SBarry Smith } 3957ccd8e176SBarry Smith 39581eea217eSSatish Balay /*@ 395911a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3960ccd8e176SBarry Smith (the default parallel PETSc format). 3961ccd8e176SBarry Smith 3962d083f849SBarry Smith Collective 3963ccd8e176SBarry Smith 3964ccd8e176SBarry Smith Input Parameters: 3965a1661176SMatthew Knepley + B - the matrix 3966d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3967d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3968ccd8e176SBarry Smith - v - optional values in the matrix 3969ccd8e176SBarry Smith 3970ccd8e176SBarry Smith Level: developer 3971ccd8e176SBarry Smith 397212251496SSatish Balay Notes: 39732ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39742ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 397511a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 397612251496SSatish Balay 39772ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 397812251496SSatish Balay 3979a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3980a4bd8bc0SBarry Smith 3981a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3982a4bd8bc0SBarry Smith 3983a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3984a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3985a4bd8bc0SBarry Smith 398612251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 398712251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3988c5e4d11fSDmitry Karpeev as shown 398927430b45SBarry Smith .vb 399027430b45SBarry Smith 1 0 0 399127430b45SBarry Smith 2 0 3 P0 399227430b45SBarry Smith ------- 399327430b45SBarry Smith 4 5 6 P1 399427430b45SBarry Smith 399527430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 399627430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 399727430b45SBarry Smith j = {0,0,2} [size = 3] 399827430b45SBarry Smith v = {1,2,3} [size = 3] 399927430b45SBarry Smith 400027430b45SBarry Smith Process1 [P1] rows_owned=[2] 400127430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 400227430b45SBarry Smith j = {0,1,2} [size = 3] 400327430b45SBarry Smith v = {4,5,6} [size = 3] 400427430b45SBarry Smith .ve 400512251496SSatish Balay 4006fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4007a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4008ccd8e176SBarry Smith @*/ 4009d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4010d71ae5a4SJacob Faibussowitsch { 4011ccd8e176SBarry Smith PetscFunctionBegin; 4012cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4014ccd8e176SBarry Smith } 4015ccd8e176SBarry Smith 40165d83a8b1SBarry Smith /*@ 401711a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4018273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4019273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 402020f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4021273d9f13SBarry Smith 4022d083f849SBarry Smith Collective 4023273d9f13SBarry Smith 4024273d9f13SBarry Smith Input Parameters: 40251c4f3114SJed Brown + B - the matrix 4026273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4027273d9f13SBarry Smith (same value is used for all local rows) 4028273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4029273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40302ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4031273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40323287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40333287b5eaSJed Brown the diagonal entry even if it is zero. 4034273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4035273d9f13SBarry Smith submatrix (same value is used for all local rows). 4036273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4037273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40382ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4039273d9f13SBarry Smith structure. The size of this array is equal to the number 4040273d9f13SBarry Smith of local rows, i.e 'm'. 4041273d9f13SBarry Smith 40422920cce0SJacob Faibussowitsch Example Usage: 404327430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 404427430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 404527430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 404627430b45SBarry Smith as follows 404727430b45SBarry Smith 404827430b45SBarry Smith .vb 404927430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 405027430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 405127430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 405227430b45SBarry Smith ------------------------------------- 405327430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 405427430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 405527430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 405627430b45SBarry Smith ------------------------------------- 405727430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 405827430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 405927430b45SBarry Smith .ve 406027430b45SBarry Smith 406127430b45SBarry Smith This can be represented as a collection of submatrices as 406227430b45SBarry Smith .vb 406327430b45SBarry Smith A B C 406427430b45SBarry Smith D E F 406527430b45SBarry Smith G H I 406627430b45SBarry Smith .ve 406727430b45SBarry Smith 406827430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 406927430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 407027430b45SBarry Smith 407127430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407227430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407327430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 407427430b45SBarry Smith 407527430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 407627430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 407727430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 407827430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 407927430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 408027430b45SBarry Smith matrix, ans [DF] as another `MATSEQAIJ` matrix. 408127430b45SBarry Smith 408220f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 408320f4b53cSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 408427430b45SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 408520f4b53cSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 408627430b45SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 408720f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 408827430b45SBarry Smith .vb 408927430b45SBarry Smith proc0 dnz = 2, o_nz = 2 409027430b45SBarry Smith proc1 dnz = 3, o_nz = 2 409127430b45SBarry Smith proc2 dnz = 1, o_nz = 4 409227430b45SBarry Smith .ve 409320f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 409427430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 409527430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 409627430b45SBarry Smith 34 values. 409727430b45SBarry Smith 409820f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 409927430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 410020f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 410127430b45SBarry Smith .vb 410227430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 410327430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 410427430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 410527430b45SBarry Smith .ve 410627430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 410727430b45SBarry Smith hence pre-allocation is perfect. 410827430b45SBarry Smith 410927430b45SBarry Smith Level: intermediate 411027430b45SBarry Smith 411127430b45SBarry Smith Notes: 411249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 411349a6f317SBarry Smith 411427430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41150598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4116651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4117273d9f13SBarry Smith 4118273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4119273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4120273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4121273d9f13SBarry Smith 4122273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4123a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4124a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4125a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4126a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4127a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4128a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4129a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4130a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4131273d9f13SBarry Smith 41322ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4133273d9f13SBarry Smith 413427430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4135aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 413627430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4137aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4138aa95bbe8SBarry Smith 41391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4140a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4141273d9f13SBarry Smith @*/ 4142d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4143d71ae5a4SJacob Faibussowitsch { 4144273d9f13SBarry Smith PetscFunctionBegin; 41456ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41466ba663aaSJed Brown PetscValidType(B, 1); 4147cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4149273d9f13SBarry Smith } 4150273d9f13SBarry Smith 415158d36128SBarry Smith /*@ 415211a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41538f8f2f0dSBarry Smith CSR format for the local rows. 41542fb0ec9aSBarry Smith 4155d083f849SBarry Smith Collective 41562fb0ec9aSBarry Smith 41572fb0ec9aSBarry Smith Input Parameters: 41582fb0ec9aSBarry Smith + comm - MPI communicator 415911a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41602fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4161d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4162d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4163d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4164d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41655693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41665693b835SJunchao Zhang . j - global column indices 4167f1f2ae84SBarry Smith - a - optional matrix values 41682fb0ec9aSBarry Smith 41692fb0ec9aSBarry Smith Output Parameter: 41702fb0ec9aSBarry Smith . mat - the matrix 417103bfb495SBarry Smith 41722fb0ec9aSBarry Smith Level: intermediate 41732fb0ec9aSBarry Smith 41742fb0ec9aSBarry Smith Notes: 41752ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4176d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4177d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41782fb0ec9aSBarry Smith 41792ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 418012251496SSatish Balay 41815693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4182a4bd8bc0SBarry Smith 41835693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4184a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4185a4bd8bc0SBarry Smith 418612251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4187d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4188c5e4d11fSDmitry Karpeev as shown 41892ef1f0ffSBarry Smith .vb 41902ef1f0ffSBarry Smith 1 0 0 41912ef1f0ffSBarry Smith 2 0 3 P0 41922ef1f0ffSBarry Smith ------- 41932ef1f0ffSBarry Smith 4 5 6 P1 41948f8f2f0dSBarry Smith 41952ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 41962ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 41972ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 41982ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 41992fb0ec9aSBarry Smith 42002ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 42012ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42022ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42032ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42042ef1f0ffSBarry Smith .ve 42052ef1f0ffSBarry Smith 4206d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42075693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42082fb0ec9aSBarry Smith @*/ 4209d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4210d71ae5a4SJacob Faibussowitsch { 42112fb0ec9aSBarry Smith PetscFunctionBegin; 421208401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 421308401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42149566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42169566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42179566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42189566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42202fb0ec9aSBarry Smith } 42212fb0ec9aSBarry Smith 42228f8f2f0dSBarry Smith /*@ 422311a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42242ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42252ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42266a3d2595SBarry Smith 42276a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42288f8f2f0dSBarry Smith 42298f8f2f0dSBarry Smith Collective 42308f8f2f0dSBarry Smith 42318f8f2f0dSBarry Smith Input Parameters: 42328f8f2f0dSBarry Smith + mat - the matrix 423311a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42348f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 423511a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42368f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 423711a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 423811a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42398f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42408f8f2f0dSBarry Smith . J - column indices 42418f8f2f0dSBarry Smith - v - matrix values 42428f8f2f0dSBarry Smith 42432ef1f0ffSBarry Smith Level: deprecated 42448f8f2f0dSBarry Smith 42451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4246a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42478f8f2f0dSBarry Smith @*/ 4248d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4249d71ae5a4SJacob Faibussowitsch { 42506a3d2595SBarry Smith PetscInt nnz, i; 42518f8f2f0dSBarry Smith PetscBool nooffprocentries; 42528f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4253fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4254fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42558f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42566a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42576a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42588f8f2f0dSBarry Smith 42598f8f2f0dSBarry Smith PetscFunctionBegin; 4260aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 426108401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 426208401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 426308401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42648f8f2f0dSBarry Smith 42659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42678f8f2f0dSBarry Smith 42688f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42694c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42704c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42714c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42724c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42734c17f1ccSBarry Smith } 42744c17f1ccSBarry Smith } 42758f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42768f8f2f0dSBarry Smith Iii = Ii[i]; 42778f8f2f0dSBarry Smith ldi = ld[i]; 42788f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42799566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42809566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42819566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42828f8f2f0dSBarry Smith ad += md; 42838f8f2f0dSBarry Smith ao += nnz - md; 42848f8f2f0dSBarry Smith } 42858f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42868f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42899566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42909566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42919566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42929566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42939566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42948f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42968f8f2f0dSBarry Smith } 42978f8f2f0dSBarry Smith 42986a3d2595SBarry Smith /*@ 429911a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 43006a3d2595SBarry Smith 43016a3d2595SBarry Smith Collective 43026a3d2595SBarry Smith 43036a3d2595SBarry Smith Input Parameters: 43046a3d2595SBarry Smith + mat - the matrix 43056a3d2595SBarry Smith - v - matrix values, stored by row 43066a3d2595SBarry Smith 43076a3d2595SBarry Smith Level: intermediate 43086a3d2595SBarry Smith 4309a4bd8bc0SBarry Smith Notes: 43106a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43116a3d2595SBarry Smith 4312a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4313a4bd8bc0SBarry Smith 43141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4315a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43166a3d2595SBarry Smith @*/ 4317d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4318d71ae5a4SJacob Faibussowitsch { 43196a3d2595SBarry Smith PetscInt nnz, i, m; 43206a3d2595SBarry Smith PetscBool nooffprocentries; 43216a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43226a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43236a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43246a3d2595SBarry Smith PetscScalar *ad, *ao; 43256a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43266a3d2595SBarry Smith PetscInt ldi, Iii, md; 43276a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43286a3d2595SBarry Smith 43296a3d2595SBarry Smith PetscFunctionBegin; 43306a3d2595SBarry Smith m = mat->rmap->n; 43316a3d2595SBarry Smith 43326a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43336a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43346a3d2595SBarry Smith Iii = 0; 43356a3d2595SBarry Smith for (i = 0; i < m; i++) { 43366a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43376a3d2595SBarry Smith ldi = ld[i]; 43386a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43396a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43406a3d2595SBarry Smith ad += md; 4341810441c8SPierre Jolivet if (ao) { 4342810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4343810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43446a3d2595SBarry Smith ao += nnz - md; 4345810441c8SPierre Jolivet } 43466a3d2595SBarry Smith Iii += nnz; 43476a3d2595SBarry Smith } 43486a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43496a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43506a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43516a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43526a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43536a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43546a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43556a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43566a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43576a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43596a3d2595SBarry Smith } 43606a3d2595SBarry Smith 43615d83a8b1SBarry Smith /*@ 436211a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4363273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4364273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43652ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4366273d9f13SBarry Smith 4367d083f849SBarry Smith Collective 4368273d9f13SBarry Smith 4369273d9f13SBarry Smith Input Parameters: 4370273d9f13SBarry Smith + comm - MPI communicator 437111a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4372273d9f13SBarry Smith This value should be the same as the local size used in creating the 4373273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4374273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 437545f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4376273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 437711a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 437811a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4379273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4380273d9f13SBarry Smith (same value is used for all local rows) 4381273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4382273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43832ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4384273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4385273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4386273d9f13SBarry Smith submatrix (same value is used for all local rows). 4387273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4388273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43892ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4390273d9f13SBarry Smith structure. The size of this array is equal to the number 4391273d9f13SBarry Smith of local rows, i.e 'm'. 4392273d9f13SBarry Smith 4393273d9f13SBarry Smith Output Parameter: 4394273d9f13SBarry Smith . A - the matrix 4395273d9f13SBarry Smith 439627430b45SBarry Smith Options Database Keys: 439727430b45SBarry Smith + -mat_no_inode - Do not use inodes 439827430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 439927430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4400727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4401727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 440227430b45SBarry Smith 44032ef1f0ffSBarry Smith Level: intermediate 44042ef1f0ffSBarry Smith 440527430b45SBarry Smith Notes: 440677433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4407f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 440811a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4409175b88e8SBarry Smith 441049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 441149a6f317SBarry Smith 44122ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44132ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4414273d9f13SBarry Smith storage requirements for this matrix. 4415273d9f13SBarry Smith 441611a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4417273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4418273d9f13SBarry Smith that argument. 4419273d9f13SBarry Smith 4420727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4421727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4422727bdf9bSBarry Smith 4423273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4424273d9f13SBarry Smith (possibly both). 4425273d9f13SBarry Smith 442633a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4427727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4428727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4429727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 443033a7c187SSatish Balay values corresponding to [m x N] submatrix. 4431273d9f13SBarry Smith 443233a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 443333a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4434df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 443533a7c187SSatish Balay 443633a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 443733a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 443833a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 443933a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 444033a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 444133a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 444233a7c187SSatish Balay illustrates this concept. 444333a7c187SSatish Balay 444433a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 444533a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 444633a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 444733a7c187SSatish Balay local matrix (a rectangular submatrix). 4448273d9f13SBarry Smith 44492ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4450273d9f13SBarry Smith 445197d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44522ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4453da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4454da57b5cdSKarl Rupp .vb 44552ef1f0ffSBarry Smith MatCreate(..., &A); 44562ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44572ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44582ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4459da57b5cdSKarl Rupp .ve 446097d05335SKris Buschelman 4461273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4462273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4463273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4464273d9f13SBarry Smith 44652920cce0SJacob Faibussowitsch Example Usage: 4466273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4467273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4468273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4469efc377ccSKarl Rupp as follows 4470273d9f13SBarry Smith 4471273d9f13SBarry Smith .vb 4472273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4473273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4474273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4475273d9f13SBarry Smith ------------------------------------- 4476273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4477273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4478273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4479273d9f13SBarry Smith ------------------------------------- 4480273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4481273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4482273d9f13SBarry Smith .ve 4483273d9f13SBarry Smith 4484da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4485273d9f13SBarry Smith 4486273d9f13SBarry Smith .vb 4487273d9f13SBarry Smith A B C 4488273d9f13SBarry Smith D E F 4489273d9f13SBarry Smith G H I 4490273d9f13SBarry Smith .ve 4491273d9f13SBarry Smith 4492273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4493273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4494273d9f13SBarry Smith 4495273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4496273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4497273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4498273d9f13SBarry Smith 4499273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4500273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4501273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4502273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 450327430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 4504273d9f13SBarry Smith matrix, ans [DF] as another SeqAIJ matrix. 4505273d9f13SBarry Smith 45062ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45072ef1f0ffSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 4508273d9f13SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 45092ef1f0ffSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 4510273d9f13SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45112ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4512273d9f13SBarry Smith .vb 451327430b45SBarry Smith proc0 dnz = 2, o_nz = 2 451427430b45SBarry Smith proc1 dnz = 3, o_nz = 2 451527430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4516273d9f13SBarry Smith .ve 45172ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4518273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4519273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4520273d9f13SBarry Smith 34 values. 4521273d9f13SBarry Smith 45222ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4523a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4524da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4525273d9f13SBarry Smith .vb 452627430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 452727430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 452827430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4529273d9f13SBarry Smith .ve 4530273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4531273d9f13SBarry Smith hence pre-allocation is perfect. 4532273d9f13SBarry Smith 45331cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4534727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4535727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4536273d9f13SBarry Smith @*/ 4537d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4538d71ae5a4SJacob Faibussowitsch { 4539b1d57f15SBarry Smith PetscMPIInt size; 4540273d9f13SBarry Smith 4541273d9f13SBarry Smith PetscFunctionBegin; 45429566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45439566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4545273d9f13SBarry Smith if (size > 1) { 45469566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45479566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4548273d9f13SBarry Smith } else { 45499566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4551273d9f13SBarry Smith } 45523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4553273d9f13SBarry Smith } 4554195d93cdSBarry Smith 45550b98dbb4SBarry Smith /*MC 45560b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45570b98dbb4SBarry Smith 45580b98dbb4SBarry Smith Synopsis: 45590b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45600b98dbb4SBarry Smith 45610b98dbb4SBarry Smith Not Collective 45620b98dbb4SBarry Smith 45630b98dbb4SBarry Smith Input Parameter: 45640b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 45650b98dbb4SBarry Smith 45660b98dbb4SBarry Smith Output Parameters: 45670b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 45684cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45692ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45700b98dbb4SBarry Smith - ierr - error code 45710b98dbb4SBarry Smith 45720b98dbb4SBarry Smith Level: advanced 45730b98dbb4SBarry Smith 45740b98dbb4SBarry Smith Note: 45750b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45760b98dbb4SBarry Smith 45771cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 45780b98dbb4SBarry Smith M*/ 45790b98dbb4SBarry Smith 45800b98dbb4SBarry Smith /*MC 45810b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45820b98dbb4SBarry Smith 45830b98dbb4SBarry Smith Synopsis: 45840b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45850b98dbb4SBarry Smith 45860b98dbb4SBarry Smith Not Collective 45870b98dbb4SBarry Smith 45880b98dbb4SBarry Smith Input Parameters: 45890b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 45900b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 45914cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45922ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45930b98dbb4SBarry Smith - ierr - error code 45940b98dbb4SBarry Smith 45950b98dbb4SBarry Smith Level: advanced 45960b98dbb4SBarry Smith 45971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 45980b98dbb4SBarry Smith M*/ 45990b98dbb4SBarry Smith 4600127ca0efSMatthew Knepley /*@C 46010ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4602127ca0efSMatthew Knepley 46032ef1f0ffSBarry Smith Not Collective 4604127ca0efSMatthew Knepley 4605127ca0efSMatthew Knepley Input Parameter: 460611a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4607127ca0efSMatthew Knepley 4608127ca0efSMatthew Knepley Output Parameters: 460911a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 461011a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46112ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4612127ca0efSMatthew Knepley 46130ab4885dSBarry Smith Level: intermediate 46140ab4885dSBarry Smith 461511a5261eSBarry Smith Note: 46162ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46172ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46182ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4619127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4620127ca0efSMatthew Knepley 4621fe59aa6dSJacob Faibussowitsch Fortran Notes: 46220ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4623127ca0efSMatthew Knepley 4624fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4625127ca0efSMatthew Knepley @*/ 4626d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4627d71ae5a4SJacob Faibussowitsch { 4628195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 462904cf37c7SBarry Smith PetscBool flg; 4630b1d57f15SBarry Smith 4631195d93cdSBarry Smith PetscFunctionBegin; 46329566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 463328b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 463421e72a00SBarry Smith if (Ad) *Ad = a->A; 463521e72a00SBarry Smith if (Ao) *Ao = a->B; 463621e72a00SBarry Smith if (colmap) *colmap = a->garray; 46373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4638195d93cdSBarry Smith } 4639a2243be0SBarry Smith 4640d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4641d71ae5a4SJacob Faibussowitsch { 4642110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46439b8102ccSHong Zhang PetscInt *indx; 4644110bb6e1SHong Zhang PetscScalar *values; 4645421ddf4dSJunchao Zhang MatType rootType; 46469b8102ccSHong Zhang 46479b8102ccSHong Zhang PetscFunctionBegin; 46489566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4649110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4650110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4651110bb6e1SHong Zhang 465248a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4653a22543b6SHong Zhang /* Check sum(n) = N */ 46541c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 465508401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4656a22543b6SHong Zhang 46579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46589b8102ccSHong Zhang rstart -= m; 46599b8102ccSHong Zhang 4660d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46619b8102ccSHong Zhang for (i = 0; i < m; i++) { 46629566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46639566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46649566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46659b8102ccSHong Zhang } 46669b8102ccSHong Zhang 46679566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46699566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46709566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46719566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46729566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46749566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4675d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46769566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46779b8102ccSHong Zhang } 46789b8102ccSHong Zhang 4679110bb6e1SHong Zhang /* numeric phase */ 46809566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46819b8102ccSHong Zhang for (i = 0; i < m; i++) { 46829566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46839b8102ccSHong Zhang Ii = i + rstart; 46849566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46859566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46869b8102ccSHong Zhang } 46879566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46889566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4690c5d6d63eSBarry Smith } 4691c5d6d63eSBarry Smith 4692d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data) 4693d71ae5a4SJacob Faibussowitsch { 46946718818eSStefano Zampini Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data; 469551a7d1a8SHong Zhang 469651a7d1a8SHong Zhang PetscFunctionBegin; 46973ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46989566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46999566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 47009566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 47019566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 47029566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 47039566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 47049566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 47059566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47069566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47079566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47089566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47099566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47109566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47119566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471351a7d1a8SHong Zhang } 471451a7d1a8SHong Zhang 4715c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4716c6db04a5SJed Brown #include <petscbt.h> 47174ebed01fSBarry Smith 4718d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4719d71ae5a4SJacob Faibussowitsch { 4720ce94432eSBarry Smith MPI_Comm comm; 472155d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4722b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 47236497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 47246497c311SBarry Smith PetscMPIInt proc, k; 4725b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 47266497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4727b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 472855d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 472955d1abb9SHong Zhang MPI_Status *status; 4730fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4731dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 473255d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4733776b82aeSLisandro Dalcin PetscContainer container; 473455d1abb9SHong Zhang 473555d1abb9SHong Zhang PetscFunctionBegin; 47369566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47379566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47383c2c1871SHong Zhang 47399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 474155d1abb9SHong Zhang 47429566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 474328b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47449566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4746fff043a9SJunchao Zhang aa = a_a; 4747bf0cc555SLisandro Dalcin 474855d1abb9SHong Zhang bi = merge->bi; 474955d1abb9SHong Zhang bj = merge->bj; 475055d1abb9SHong Zhang buf_ri = merge->buf_ri; 475155d1abb9SHong Zhang buf_rj = merge->buf_rj; 475255d1abb9SHong Zhang 47539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47547a2fc3feSBarry Smith owners = merge->rowmap->range; 475555d1abb9SHong Zhang len_s = merge->len_s; 475655d1abb9SHong Zhang 475755d1abb9SHong Zhang /* send and recv matrix values */ 47589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47599566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 476055d1abb9SHong Zhang 47619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 476255d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 476355d1abb9SHong Zhang if (!len_s[proc]) continue; 476455d1abb9SHong Zhang i = owners[proc]; 47656497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 476655d1abb9SHong Zhang k++; 476755d1abb9SHong Zhang } 476855d1abb9SHong Zhang 47699566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47709566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47719566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 477255d1abb9SHong Zhang 47739566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47749566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 477555d1abb9SHong Zhang 477655d1abb9SHong Zhang /* insert mat values of mpimat */ 47779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47789566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 477955d1abb9SHong Zhang 478055d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 478155d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4782f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 478355d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4784a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 478555d1abb9SHong Zhang } 478655d1abb9SHong Zhang 478755d1abb9SHong Zhang /* set values of ba */ 47887a2fc3feSBarry Smith m = merge->rowmap->n; 478955d1abb9SHong Zhang for (i = 0; i < m; i++) { 479055d1abb9SHong Zhang arow = owners[rank] + i; 479155d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 479255d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47939566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 479455d1abb9SHong Zhang 479555d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 479655d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 479755d1abb9SHong Zhang aj = a->j + ai[arow]; 4798fff043a9SJunchao Zhang aa = a_a + ai[arow]; 479955d1abb9SHong Zhang nextaj = 0; 480055d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 480155d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 480255d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 480355d1abb9SHong Zhang } 480455d1abb9SHong Zhang } 480555d1abb9SHong Zhang 480655d1abb9SHong Zhang /* add received vals into ba */ 480755d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 480855d1abb9SHong Zhang /* i-th row */ 480955d1abb9SHong Zhang if (i == *nextrow[k]) { 481055d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4811f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4812f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 481355d1abb9SHong Zhang nextaj = 0; 481455d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 481555d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 481655d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 481755d1abb9SHong Zhang } 481855d1abb9SHong Zhang } 48199371c9d4SSatish Balay nextrow[k]++; 48209371c9d4SSatish Balay nextai[k]++; 482155d1abb9SHong Zhang } 482255d1abb9SHong Zhang } 48239566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 482455d1abb9SHong Zhang } 48259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48269566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48279566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 482855d1abb9SHong Zhang 48299566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48309566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48319566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48329566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48339566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 483555d1abb9SHong Zhang } 483638f152feSBarry Smith 4837d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4838d71ae5a4SJacob Faibussowitsch { 483955a3bba9SHong Zhang Mat B_mpi; 4840c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4841b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4842b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4843d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 48446497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4845c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4846b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 484755d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 484858cb9c82SHong Zhang MPI_Status *status; 48490298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4850be0fcf8dSHong Zhang PetscBT lnkbt; 485151a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4852776b82aeSLisandro Dalcin PetscContainer container; 485302c68681SHong Zhang 4854e5f2cdd8SHong Zhang PetscFunctionBegin; 48559566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48563c2c1871SHong Zhang 485738f152feSBarry Smith /* make sure it is a PETSc comm */ 48589566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 486155d1abb9SHong Zhang 48629566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4864e5f2cdd8SHong Zhang 48656abd8857SHong Zhang /* determine row ownership */ 48669566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48679566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48689566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48709566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 487355d1abb9SHong Zhang 48747a2fc3feSBarry Smith m = merge->rowmap->n; 48757a2fc3feSBarry Smith owners = merge->rowmap->range; 48766abd8857SHong Zhang 48776abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48783e06a4e6SHong Zhang len_s = merge->len_s; 487951a7d1a8SHong Zhang 48802257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4881c2234fe3SHong Zhang merge->nsend = 0; 48826497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 48832257cef7SHong Zhang len_si[proc] = 0; 48843e06a4e6SHong Zhang if (proc == rank) { 48856abd8857SHong Zhang len_s[proc] = 0; 48863e06a4e6SHong Zhang } else { 48876497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 48886497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 48893e06a4e6SHong Zhang } 48903e06a4e6SHong Zhang if (len_s[proc]) { 4891c2234fe3SHong Zhang merge->nsend++; 48922257cef7SHong Zhang nrows = 0; 48932257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48942257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48952257cef7SHong Zhang } 48966497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 48972257cef7SHong Zhang len += len_si[proc]; 4898409913e3SHong Zhang } 489958cb9c82SHong Zhang } 4900409913e3SHong Zhang 49012257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 49029566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 49039566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4904671beff6SHong Zhang 49053e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49069566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49079566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 490802c68681SHong Zhang 49093e06a4e6SHong Zhang /* post the Isend of j-structure */ 49109566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49113e06a4e6SHong Zhang 49126497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4913409913e3SHong Zhang if (!len_s[proc]) continue; 491402c68681SHong Zhang i = owners[proc]; 49156497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 491651a7d1a8SHong Zhang k++; 491751a7d1a8SHong Zhang } 491851a7d1a8SHong Zhang 49193e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49209566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49219566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 492202c68681SHong Zhang 492302c68681SHong Zhang /* send and recv i-structure */ 49249566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49259566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 492602c68681SHong Zhang 49279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49283e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49296497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 493002c68681SHong Zhang if (!len_s[proc]) continue; 49313e06a4e6SHong Zhang /* form outgoing message for i-structure: 49323e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49333e06a4e6SHong Zhang [1:nrows]: row index (global) 49343e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49353e06a4e6SHong Zhang */ 49362257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49373e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49383e06a4e6SHong Zhang buf_si[0] = nrows; 49393e06a4e6SHong Zhang buf_si_i[0] = 0; 49403e06a4e6SHong Zhang nrows = 0; 49413e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49423e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49433e06a4e6SHong Zhang if (anzi) { 49443e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49453e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49463e06a4e6SHong Zhang nrows++; 49473e06a4e6SHong Zhang } 49483e06a4e6SHong Zhang } 49496497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 495002c68681SHong Zhang k++; 49512257cef7SHong Zhang buf_si += len_si[proc]; 495202c68681SHong Zhang } 49532257cef7SHong Zhang 49549566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49559566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 495602c68681SHong Zhang 49579566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 495848a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49593e06a4e6SHong Zhang 49609566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49619566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49629566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49639566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49649566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49659566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49669566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 496758cb9c82SHong Zhang 4968bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 496958cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 497158cb9c82SHong Zhang bi[0] = 0; 497258cb9c82SHong Zhang 4973be0fcf8dSHong Zhang /* create and initialize a linked list */ 4974be0fcf8dSHong Zhang nlnk = N + 1; 49759566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 497658cb9c82SHong Zhang 4977bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4978bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49799566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49802205254eSKarl Rupp 498158cb9c82SHong Zhang current_space = free_space; 498258cb9c82SHong Zhang 4983bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49849566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49851d79065fSBarry Smith 49863e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49872257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49883e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49893e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4990a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49913e06a4e6SHong Zhang } 49922257cef7SHong Zhang 4993d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4994bcc1bcd5SHong Zhang len = 0; 499558cb9c82SHong Zhang for (i = 0; i < m; i++) { 499658cb9c82SHong Zhang bnzi = 0; 499758cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 499858cb9c82SHong Zhang arow = owners[rank] + i; 499958cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 500058cb9c82SHong Zhang aj = a->j + ai[arow]; 50019566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 500258cb9c82SHong Zhang bnzi += nlnk; 500358cb9c82SHong Zhang /* add received col data into lnk */ 500451a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 500555d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50063e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50073e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50089566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50093e06a4e6SHong Zhang bnzi += nlnk; 50109371c9d4SSatish Balay nextrow[k]++; 50119371c9d4SSatish Balay nextai[k]++; 50123e06a4e6SHong Zhang } 501358cb9c82SHong Zhang } 5014bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 501558cb9c82SHong Zhang 501658cb9c82SHong Zhang /* if free space is not available, make more free space */ 501748a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 501858cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50199566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50209566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5021bcc1bcd5SHong Zhang 502258cb9c82SHong Zhang current_space->array += bnzi; 502358cb9c82SHong Zhang current_space->local_used += bnzi; 502458cb9c82SHong Zhang current_space->local_remaining -= bnzi; 502558cb9c82SHong Zhang 502658cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 502758cb9c82SHong Zhang } 5028bcc1bcd5SHong Zhang 50299566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5030bcc1bcd5SHong Zhang 50319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50329566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50339566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5034409913e3SHong Zhang 5035bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50369566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50379566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 503854b84b50SHong Zhang if (n == PETSC_DECIDE) { 50399566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 504054b84b50SHong Zhang } else { 50419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 504254b84b50SHong Zhang } 50439566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50449566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50459566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5046d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50479566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 504858cb9c82SHong Zhang 504990431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50506abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5051affca5deSHong Zhang merge->bi = bi; 5052affca5deSHong Zhang merge->bj = bj; 505302c68681SHong Zhang merge->buf_ri = buf_ri; 505402c68681SHong Zhang merge->buf_rj = buf_rj; 50550298fd71SBarry Smith merge->coi = NULL; 50560298fd71SBarry Smith merge->coj = NULL; 50570298fd71SBarry Smith merge->owners_co = NULL; 5058affca5deSHong Zhang 50599566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5060bf0cc555SLisandro Dalcin 5061affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50629566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50639566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 50649566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50659566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50669566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5067affca5deSHong Zhang *mpimat = B_mpi; 506838f152feSBarry Smith 50699566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5071e5f2cdd8SHong Zhang } 507225616d81SHong Zhang 5073cc4c1da9SBarry Smith /*@ 507411a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5075d4036a1aSHong Zhang matrices from each processor 5076d4036a1aSHong Zhang 5077d083f849SBarry Smith Collective 5078d4036a1aSHong Zhang 5079d4036a1aSHong Zhang Input Parameters: 5080d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5081d4036a1aSHong Zhang . seqmat - the input sequential matrices 508211a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 508311a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 508411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5085d4036a1aSHong Zhang 5086d4036a1aSHong Zhang Output Parameter: 5087d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5088d4036a1aSHong Zhang 5089d4036a1aSHong Zhang Level: advanced 5090d4036a1aSHong Zhang 509111a5261eSBarry Smith Note: 5092d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5093d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5094b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 50952ef1f0ffSBarry Smith 50961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5097d4036a1aSHong Zhang @*/ 5098d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5099d71ae5a4SJacob Faibussowitsch { 51007e63b356SHong Zhang PetscMPIInt size; 510155d1abb9SHong Zhang 510255d1abb9SHong Zhang PetscFunctionBegin; 51039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 51047e63b356SHong Zhang if (size == 1) { 51059566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51067e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51079566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51087e63b356SHong Zhang } else { 51099566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51107e63b356SHong Zhang } 51119566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51137e63b356SHong Zhang } 51149566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 511548a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51169566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51179566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 511955d1abb9SHong Zhang } 51204ebed01fSBarry Smith 5121bc08b0f1SBarry Smith /*@ 51222920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51238a9c020eSBarry Smith 51248a9c020eSBarry Smith Not Collective 51258a9c020eSBarry Smith 51262fe279fdSBarry Smith Input Parameter: 512720f4b53cSBarry Smith . A - the matrix 51288a9c020eSBarry Smith 51298a9c020eSBarry Smith Output Parameter: 51308a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51318a9c020eSBarry Smith 51328a9c020eSBarry Smith Level: developer 51338a9c020eSBarry Smith 51348a9c020eSBarry Smith Notes: 51352920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51362920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51372920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51382920cce0SJacob Faibussowitsch 513911a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51408a9c020eSBarry Smith 51412920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51422920cce0SJacob Faibussowitsch 514311a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51448a9c020eSBarry Smith 51451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51468a9c020eSBarry Smith @*/ 5147d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5148d71ae5a4SJacob Faibussowitsch { 51498a9c020eSBarry Smith PetscBool mpi; 51508a9c020eSBarry Smith 51518a9c020eSBarry Smith PetscFunctionBegin; 51528a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51538a9c020eSBarry Smith if (mpi) { 51548a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51558a9c020eSBarry Smith } else { 51568a9c020eSBarry Smith *A_loc = A; 51578a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51588a9c020eSBarry Smith } 51593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51608a9c020eSBarry Smith } 51618a9c020eSBarry Smith 51628a9c020eSBarry Smith /*@ 51632920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 516425616d81SHong Zhang 516532fba14fSHong Zhang Not Collective 516625616d81SHong Zhang 516725616d81SHong Zhang Input Parameters: 516825616d81SHong Zhang + A - the matrix 516911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 517025616d81SHong Zhang 517125616d81SHong Zhang Output Parameter: 517225616d81SHong Zhang . A_loc - the local sequential matrix generated 517325616d81SHong Zhang 517425616d81SHong Zhang Level: developer 517525616d81SHong Zhang 517677c65a98SStefano Zampini Notes: 51772920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51782920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51792920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51802920cce0SJacob Faibussowitsch 518111a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51828a9c020eSBarry Smith 51832920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51842920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51852920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51862920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 518777c65a98SStefano Zampini 51881cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 518925616d81SHong Zhang @*/ 5190d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5191d71ae5a4SJacob Faibussowitsch { 519201b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5193b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5194b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5195ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5196ce496241SStefano Zampini PetscScalar *ca, *cam; 519777c65a98SStefano Zampini PetscMPIInt size; 5198d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51995a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 52008661ff28SBarry Smith PetscBool match; 520125616d81SHong Zhang 520225616d81SHong Zhang PetscFunctionBegin; 52039566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 520428b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 52059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 520677c65a98SStefano Zampini if (size == 1) { 520777c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52089566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 520977c65a98SStefano Zampini *A_loc = mpimat->A; 521077c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52119566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 521277c65a98SStefano Zampini } 52133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 521477c65a98SStefano Zampini } 521570a9ba44SHong Zhang 52169566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5217f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5218f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 52199371c9d4SSatish Balay ai = a->i; 52209371c9d4SSatish Balay aj = a->j; 52219371c9d4SSatish Balay bi = b->i; 52229371c9d4SSatish Balay bj = b->j; 52239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5225ce496241SStefano Zampini aa = aav; 5226ce496241SStefano Zampini ba = bav; 522701b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5229dea91ad1SHong Zhang ci[0] = 0; 5230ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5233dea91ad1SHong Zhang k = 0; 523401b7ae99SHong Zhang for (i = 0; i < am; i++) { 52355a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52365a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 523701b7ae99SHong Zhang /* off-diagonal portion of A */ 52385a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52395a7d977cSHong Zhang col = cmap[*bj]; 52405a7d977cSHong Zhang if (col >= cstart) break; 52419371c9d4SSatish Balay cj[k] = col; 52429371c9d4SSatish Balay bj++; 52435a7d977cSHong Zhang ca[k++] = *ba++; 52445a7d977cSHong Zhang } 52455a7d977cSHong Zhang /* diagonal portion of A */ 52465a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52475a7d977cSHong Zhang cj[k] = cstart + *aj++; 52485a7d977cSHong Zhang ca[k++] = *aa++; 52495a7d977cSHong Zhang } 52505a7d977cSHong Zhang /* off-diagonal portion of A */ 52515a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52525a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52535a7d977cSHong Zhang ca[k++] = *ba++; 52545a7d977cSHong Zhang } 525525616d81SHong Zhang } 5256dea91ad1SHong Zhang /* put together the new matrix */ 52579566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5258dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5259dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5260dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5261e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5262e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5263dea91ad1SHong Zhang mat->nonew = 0; 52645a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52655a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5266fff043a9SJunchao Zhang ci = mat->i; 5267fff043a9SJunchao Zhang cj = mat->j; 52689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52695a7d977cSHong Zhang for (i = 0; i < am; i++) { 52705a7d977cSHong Zhang /* off-diagonal portion of A */ 52715a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52725a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52735a7d977cSHong Zhang col = cmap[*bj]; 52745a7d977cSHong Zhang if (col >= cstart) break; 52759371c9d4SSatish Balay *cam++ = *ba++; 52769371c9d4SSatish Balay bj++; 52775a7d977cSHong Zhang } 52785a7d977cSHong Zhang /* diagonal portion of A */ 5279ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5280a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52815a7d977cSHong Zhang /* off-diagonal portion of A */ 5282f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52839371c9d4SSatish Balay *cam++ = *ba++; 52849371c9d4SSatish Balay bj++; 5285f33d1a9aSHong Zhang } 52865a7d977cSHong Zhang } 52879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 528898921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52919566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 529325616d81SHong Zhang } 529425616d81SHong Zhang 5295ed502f03SStefano Zampini /*@ 529611a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52974cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5298ed502f03SStefano Zampini 5299ed502f03SStefano Zampini Not Collective 5300ed502f03SStefano Zampini 5301ed502f03SStefano Zampini Input Parameters: 5302ed502f03SStefano Zampini + A - the matrix 530311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5304ed502f03SStefano Zampini 5305d8d19677SJose E. Roman Output Parameters: 53062ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5307ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5308ed502f03SStefano Zampini 5309ed502f03SStefano Zampini Level: developer 5310ed502f03SStefano Zampini 531111a5261eSBarry Smith Note: 53122ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53134cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5314ed502f03SStefano Zampini 53151cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5316ed502f03SStefano Zampini @*/ 5317d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5318d71ae5a4SJacob Faibussowitsch { 5319ed502f03SStefano Zampini Mat Ao, Ad; 5320ed502f03SStefano Zampini const PetscInt *cmap; 5321ed502f03SStefano Zampini PetscMPIInt size; 5322ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5323ed502f03SStefano Zampini 5324ed502f03SStefano Zampini PetscFunctionBegin; 53259566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5327ed502f03SStefano Zampini if (size == 1) { 5328ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53299566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5330ed502f03SStefano Zampini *A_loc = Ad; 5331ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53329566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5333ed502f03SStefano Zampini } 53349566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5336ed502f03SStefano Zampini } 53379566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53389566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5339ed502f03SStefano Zampini if (f) { 53409566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5341ed502f03SStefano Zampini } else { 5342ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5343ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5344ed502f03SStefano Zampini Mat_SeqAIJ *c; 5345ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5346ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5347ed502f03SStefano Zampini PetscInt *ci, *cj; 5348ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5349ed502f03SStefano Zampini PetscScalar *ca; 5350ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5351ed502f03SStefano Zampini 53529566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53539566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5356ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5357ed502f03SStefano Zampini PetscInt k; 53589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5361ed502f03SStefano Zampini ci[0] = 0; 5362ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5363ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5364ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5365ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5366ed502f03SStefano Zampini /* diagonal portion of A */ 5367ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5368ed502f03SStefano Zampini cj[k] = *aj++; 5369ed502f03SStefano Zampini ca[k] = *aa++; 5370ed502f03SStefano Zampini } 5371ed502f03SStefano Zampini /* off-diagonal portion of A */ 5372ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5373ed502f03SStefano Zampini cj[k] = dn + *bj++; 5374ed502f03SStefano Zampini ca[k] = *ba++; 5375ed502f03SStefano Zampini } 5376ed502f03SStefano Zampini } 5377ed502f03SStefano Zampini /* put together the new matrix */ 53789566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5379ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5380ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5381ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5382ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5383ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5384ed502f03SStefano Zampini c->nonew = 0; 53859566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5386ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5388ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5389ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5390ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5391ed502f03SStefano Zampini /* diagonal portion of A */ 5392ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5393ed502f03SStefano Zampini /* off-diagonal portion of A */ 5394ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5395ed502f03SStefano Zampini } 53969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 539798921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5400ed502f03SStefano Zampini if (glob) { 5401ed502f03SStefano Zampini PetscInt cst, *gidx; 5402ed502f03SStefano Zampini 54039566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 54049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5405ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5406ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54079566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5408ed502f03SStefano Zampini } 5409ed502f03SStefano Zampini } 54109566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5412ed502f03SStefano Zampini } 5413ed502f03SStefano Zampini 541432fba14fSHong Zhang /*@C 541511a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 541632fba14fSHong Zhang 541732fba14fSHong Zhang Not Collective 541832fba14fSHong Zhang 541932fba14fSHong Zhang Input Parameters: 542032fba14fSHong Zhang + A - the matrix 542111a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 542220f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 542320f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 542432fba14fSHong Zhang 542532fba14fSHong Zhang Output Parameter: 542632fba14fSHong Zhang . A_loc - the local sequential matrix generated 542732fba14fSHong Zhang 542832fba14fSHong Zhang Level: developer 542932fba14fSHong Zhang 54301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 543132fba14fSHong Zhang @*/ 5432d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5433d71ae5a4SJacob Faibussowitsch { 543432fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 543532fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 543632fba14fSHong Zhang IS isrowa, iscola; 543732fba14fSHong Zhang Mat *aloc; 54384a2b5492SBarry Smith PetscBool match; 543932fba14fSHong Zhang 544032fba14fSHong Zhang PetscFunctionBegin; 54419566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 544228b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54439566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 544432fba14fSHong Zhang if (!row) { 54459371c9d4SSatish Balay start = A->rmap->rstart; 54469371c9d4SSatish Balay end = A->rmap->rend; 54479566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 544832fba14fSHong Zhang } else { 544932fba14fSHong Zhang isrowa = *row; 545032fba14fSHong Zhang } 545132fba14fSHong Zhang if (!col) { 5452d0f46423SBarry Smith start = A->cmap->rstart; 545332fba14fSHong Zhang cmap = a->garray; 5454d0f46423SBarry Smith nzA = a->A->cmap->n; 5455d0f46423SBarry Smith nzB = a->B->cmap->n; 54569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 545732fba14fSHong Zhang ncols = 0; 545832fba14fSHong Zhang for (i = 0; i < nzB; i++) { 545932fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 546032fba14fSHong Zhang else break; 546132fba14fSHong Zhang } 546232fba14fSHong Zhang imark = i; 546332fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 546432fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54659566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 546632fba14fSHong Zhang } else { 546732fba14fSHong Zhang iscola = *col; 546832fba14fSHong Zhang } 546932fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 547132fba14fSHong Zhang aloc[0] = *A_loc; 547232fba14fSHong Zhang } 54739566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5474109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54759566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5476109e0772SStefano Zampini } 547732fba14fSHong Zhang *A_loc = aloc[0]; 54789566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 547948a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 548048a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54819566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548332fba14fSHong Zhang } 548432fba14fSHong Zhang 54855c65b9ecSFande Kong /* 54865c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54875c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54885c65b9ecSFande Kong * on a global size. 54895c65b9ecSFande Kong * */ 5490ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5491d71ae5a4SJacob Faibussowitsch { 54925c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5493f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5494131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5495131c27b5Sprj- PetscMPIInt owner; 54965c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54975c65b9ecSFande Kong const PetscInt *lrowindices; 54985c65b9ecSFande Kong PetscSF sf, osf; 54995c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 55005c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 55015c65b9ecSFande Kong MPI_Comm comm; 55025c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5503fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 55045c65b9ecSFande Kong 55055c65b9ecSFande Kong PetscFunctionBegin; 55069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55075c65b9ecSFande Kong /* plocalsize is the number of roots 55085c65b9ecSFande Kong * nrows is the number of leaves 55095c65b9ecSFande Kong * */ 55109566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55119566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55139566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55145c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55155c65b9ecSFande Kong /* Find a remote index and an owner for a row 55165c65b9ecSFande Kong * The row could be local or remote 55175c65b9ecSFande Kong * */ 551834bcad68SFande Kong owner = 0; 551934bcad68SFande Kong lidx = 0; 55209566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55215c65b9ecSFande Kong iremote[i].index = lidx; 55225c65b9ecSFande Kong iremote[i].rank = owner; 55235c65b9ecSFande Kong } 55245c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55259566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5526f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55275c65b9ecSFande Kong * offsets 55285c65b9ecSFande Kong * */ 55299566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55309566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55319566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5532bc8e477aSFande Kong 55339566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55349566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55359566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55365c65b9ecSFande Kong roffsets[0] = 0; 55375c65b9ecSFande Kong roffsets[1] = 0; 55385c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55394cf0e950SBarry Smith /* diagonal */ 55405c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55414cf0e950SBarry Smith /* off-diagonal */ 55425c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55435c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55445c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55455c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55465c65b9ecSFande Kong } 55479566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55489566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55495c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55519566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55539566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55549566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55559566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55569566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55575c65b9ecSFande Kong dntotalcols = 0; 55585c65b9ecSFande Kong ontotalcols = 0; 5559bc8e477aSFande Kong ncol = 0; 55605c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55615c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5562bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55634cf0e950SBarry Smith /* diagonal */ 55645c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55654cf0e950SBarry Smith /* off-diagonal */ 55665c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55675c65b9ecSFande Kong } 55685c65b9ecSFande Kong /* We do not need to figure the right number of columns 55695c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55705c65b9ecSFande Kong * */ 55719566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55729566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55739566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55745c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55754cf0e950SBarry Smith /* diagonal */ 55769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55774cf0e950SBarry Smith /* off-diagonal */ 55789566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55794cf0e950SBarry Smith /* diagonal */ 55809566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55814cf0e950SBarry Smith /* off-diagonal */ 55829566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55835c65b9ecSFande Kong dntotalcols = 0; 55845c65b9ecSFande Kong ontotalcols = 0; 55855c65b9ecSFande Kong ntotalcols = 0; 55865c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 558734bcad68SFande Kong owner = 0; 55889566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55895c65b9ecSFande Kong /* Set iremote for diag matrix */ 55905c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55915c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55925c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55935c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55945c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55955c65b9ecSFande Kong } 55964cf0e950SBarry Smith /* off-diagonal */ 55975c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55985c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55995c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 56005c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 56015c65b9ecSFande Kong } 56025c65b9ecSFande Kong } 56039566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 56049566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 56059566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56069566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56075c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56085c65b9ecSFande Kong * Diag matrix 56095c65b9ecSFande Kong * */ 56109566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56119566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56129566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56135c65b9ecSFande Kong 56149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56154cf0e950SBarry Smith /* off-diagonal */ 56169566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56179566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56189566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56214cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56249566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56255c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56265c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56279566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56285c65b9ecSFande Kong /* We want P_oth store global indices */ 56299566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56305c65b9ecSFande Kong /* Use memory scalable approach */ 56319566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56329566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56339566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56349566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56355c65b9ecSFande Kong /* Convert back to local indices */ 56365c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56379566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56385c65b9ecSFande Kong nout = 0; 56399566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 564008401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56419566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56425c65b9ecSFande Kong /* Exchange values */ 56439566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56449566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56475c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56485c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56499566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56509566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56515c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56529566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56539566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56549566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56559566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56575c65b9ecSFande Kong } 56585c65b9ecSFande Kong 56595c65b9ecSFande Kong /* 56605c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56615c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56625c65b9ecSFande Kong * */ 5663d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5664d71ae5a4SJacob Faibussowitsch { 56655c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5666bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5667bc8e477aSFande Kong IS rows, map; 5668bc8e477aSFande Kong PetscHMapI hamp; 5669bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56705c65b9ecSFande Kong MPI_Comm comm; 56715c65b9ecSFande Kong PetscSF sf, osf; 5672bc8e477aSFande Kong PetscBool has; 56735c65b9ecSFande Kong 56745c65b9ecSFande Kong PetscFunctionBegin; 56759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56769566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56775c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56785c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56795c65b9ecSFande Kong * */ 56805c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56815c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5682eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56839566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5684bc8e477aSFande Kong count = 0; 5685bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5686bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5687bc8e477aSFande Kong key = a->garray[i] / dof; 56889566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5689bc8e477aSFande Kong if (!has) { 5690bc8e477aSFande Kong mapping[i] = count; 56919566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5692bc8e477aSFande Kong } else { 5693bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5694bc8e477aSFande Kong mapping[i] = count - 1; 56955c65b9ecSFande Kong } 5696bc8e477aSFande Kong } 56979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56989566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5699eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 57009566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 57015c65b9ecSFande Kong off = 0; 57029566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 57039566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 57049566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 57059566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57065c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57079566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57089566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57099566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57109566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57119566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57125c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57135c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 571435cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5715fff043a9SJunchao Zhang */ 5716fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5717fff043a9SJunchao Zhang 57189566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57199566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 572008401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57215c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57225c65b9ecSFande Kong /* Update values in place */ 57239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57259566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57269566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57279566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57289566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57316718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57329566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57345c65b9ecSFande Kong } 57355c65b9ecSFande Kong 573625616d81SHong Zhang /*@C 573720f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 573825616d81SHong Zhang 5739c3339decSBarry Smith Collective 574025616d81SHong Zhang 574125616d81SHong Zhang Input Parameters: 574211a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 574311a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 574411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 574525616d81SHong Zhang 5746f1a722f8SMatthew G. Knepley Output Parameters: 574727430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 574827430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5749f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 575025616d81SHong Zhang 575125616d81SHong Zhang Level: developer 575225616d81SHong Zhang 575320f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 575425616d81SHong Zhang @*/ 5755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5756d71ae5a4SJacob Faibussowitsch { 5757899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5758b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 575925616d81SHong Zhang IS isrowb, iscolb; 57600298fd71SBarry Smith Mat *bseq = NULL; 576125616d81SHong Zhang 576225616d81SHong Zhang PetscFunctionBegin; 576320f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 576420f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57659566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 576625616d81SHong Zhang 576725616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5768d0f46423SBarry Smith start = A->cmap->rstart; 576925616d81SHong Zhang cmap = a->garray; 5770d0f46423SBarry Smith nzA = a->A->cmap->n; 5771d0f46423SBarry Smith nzB = a->B->cmap->n; 57729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 577325616d81SHong Zhang ncols = 0; 57740390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 577525616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 577625616d81SHong Zhang else break; 577725616d81SHong Zhang } 577825616d81SHong Zhang imark = i; 57790390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57800390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57819566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57829566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 578325616d81SHong Zhang } else { 578408401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57859371c9d4SSatish Balay isrowb = *rowb; 57869371c9d4SSatish Balay iscolb = *colb; 57879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 578825616d81SHong Zhang bseq[0] = *B_seq; 578925616d81SHong Zhang } 57909566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 579125616d81SHong Zhang *B_seq = bseq[0]; 57929566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 579325616d81SHong Zhang if (!rowb) { 57949566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 579525616d81SHong Zhang } else { 579625616d81SHong Zhang *rowb = isrowb; 579725616d81SHong Zhang } 579825616d81SHong Zhang if (!colb) { 57999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 580025616d81SHong Zhang } else { 580125616d81SHong Zhang *colb = iscolb; 580225616d81SHong Zhang } 58039566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 58043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 580525616d81SHong Zhang } 5806429d309bSHong Zhang 5807f8487c73SHong Zhang /* 580827430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 580901b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5810429d309bSHong Zhang 5811c3339decSBarry Smith Collective 5812429d309bSHong Zhang 5813429d309bSHong Zhang Input Parameters: 581427430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 581527430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5816429d309bSHong Zhang 5817429d309bSHong Zhang Output Parameter: 58180298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58190298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58200298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5821598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5822429d309bSHong Zhang 582311a5261eSBarry Smith Developer Note: 582411a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58256eb45d04SBarry Smith for this matrix. This is not desirable.. 58266eb45d04SBarry Smith 5827429d309bSHong Zhang Level: developer 5828429d309bSHong Zhang 5829f8487c73SHong Zhang */ 58306497c311SBarry Smith 5831d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5832d71ae5a4SJacob Faibussowitsch { 5833899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 583487025532SHong Zhang Mat_SeqAIJ *b_oth; 58354b8d542aSHong Zhang VecScatter ctx; 5836ce94432eSBarry Smith MPI_Comm comm; 58373515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58386497c311SBarry Smith PetscMPIInt nrecvs, nsends; 58393515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5840277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 58416497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5842277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5843ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5844ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5845429d309bSHong Zhang 5846429d309bSHong Zhang PetscFunctionBegin; 58479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5849a7c7454dSHong Zhang 585020f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 585120f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58529566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5854a6b2eed2SHong Zhang 5855ec07b8f8SHong Zhang if (size == 1) { 5856ec07b8f8SHong Zhang startsj_s = NULL; 5857ec07b8f8SHong Zhang bufa_ptr = NULL; 585852f7967eSHong Zhang *B_oth = NULL; 58593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5860ec07b8f8SHong Zhang } 5861ec07b8f8SHong Zhang 5862fa83eaafSHong Zhang ctx = a->Mvctx; 58634b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58644b8d542aSHong Zhang 58659566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58663515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58679566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58689566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5870ddea5d60SJunchao Zhang rwaits = reqs; 58718e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5872429d309bSHong Zhang 5873b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5874429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5875a6b2eed2SHong Zhang /* i-array */ 5876a6b2eed2SHong Zhang /* post receives */ 58779566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5878a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 587974268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5880e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58816497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5882429d309bSHong Zhang } 5883a6b2eed2SHong Zhang 5884a6b2eed2SHong Zhang /* pack the outgoing message */ 58859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58862205254eSKarl Rupp 58872205254eSKarl Rupp sstartsj[0] = 0; 58882205254eSKarl Rupp rstartsj[0] = 0; 5889a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58903515ee7fSJunchao Zhang if (nsends) { 58913515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58933515ee7fSJunchao Zhang } 5894a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58953515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5896e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 589787025532SHong Zhang for (j = 0; j < nrows; j++) { 5898d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5899e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 59009566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 59012205254eSKarl Rupp 5902e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 59032205254eSKarl Rupp 5904e42f35eeSHong Zhang len += ncols; 59059566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5906e42f35eeSHong Zhang } 5907a6b2eed2SHong Zhang k++; 5908429d309bSHong Zhang } 59096497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59102205254eSKarl Rupp 5911dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5912429d309bSHong Zhang } 591387025532SHong Zhang /* recvs and sends of i-array are completed */ 59149566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59159566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5916e42f35eeSHong Zhang 5917a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5920a6b2eed2SHong Zhang 592187025532SHong Zhang /* create i-array of B_oth */ 59229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59232205254eSKarl Rupp 592487025532SHong Zhang b_othi[0] = 0; 5925a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5926a6b2eed2SHong Zhang k = 0; 5927a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59283515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59293515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 593087025532SHong Zhang for (j = 0; j < nrows; j++) { 593187025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59329566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5933f91af8c7SBarry Smith k++; 5934a6b2eed2SHong Zhang } 5935dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5936a6b2eed2SHong Zhang } 59379566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5938a6b2eed2SHong Zhang 59396aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5942a6b2eed2SHong Zhang 594387025532SHong Zhang /* j-array */ 5944a6b2eed2SHong Zhang /* post receives of j-array */ 5945a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 594687025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59476497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5948a6b2eed2SHong Zhang } 5949e42f35eeSHong Zhang 5950e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59513515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5952a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5953e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5954a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 595587025532SHong Zhang for (j = 0; j < nrows; j++) { 5956d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5957e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59589566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5959ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59609566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5961e42f35eeSHong Zhang } 596287025532SHong Zhang } 59636497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 596487025532SHong Zhang } 596587025532SHong Zhang 596687025532SHong Zhang /* recvs and sends of j-array are completed */ 59679566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 596887025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5969b7f45c76SHong Zhang sstartsj = *startsj_s; 59701d79065fSBarry Smith rstartsj = *startsj_r; 597187025532SHong Zhang bufa = *bufa_ptr; 597287025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 59739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5974ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 597587025532SHong Zhang 597687025532SHong Zhang /* a-array */ 597787025532SHong Zhang /* post receives of a-array */ 597887025532SHong Zhang for (i = 0; i < nrecvs; i++) { 597987025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59806497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 598187025532SHong Zhang } 5982e42f35eeSHong Zhang 5983e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59843515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 598587025532SHong Zhang for (i = 0; i < nsends; i++) { 5986e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 598787025532SHong Zhang bufA = bufa + sstartsj[i]; 598887025532SHong Zhang for (j = 0; j < nrows; j++) { 5989d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5990e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59919566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5992ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59939566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5994e42f35eeSHong Zhang } 5995a6b2eed2SHong Zhang } 59966497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5997a6b2eed2SHong Zhang } 599887025532SHong Zhang /* recvs and sends of a-array are completed */ 59999566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 60009566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 6001a6b2eed2SHong Zhang 600287025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 6003a6b2eed2SHong Zhang /* put together the new matrix */ 60049566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 6005a6b2eed2SHong Zhang 6006a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6007a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 600887025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6009e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6010e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 601187025532SHong Zhang b_oth->nonew = 0; 6012a6b2eed2SHong Zhang 60139566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6014b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60159566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60169566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6017dea91ad1SHong Zhang } else { 6018b7f45c76SHong Zhang *startsj_s = sstartsj; 60191d79065fSBarry Smith *startsj_r = rstartsj; 602087025532SHong Zhang *bufa_ptr = bufa; 602187025532SHong Zhang } 6022fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6024dea91ad1SHong Zhang } 60253515ee7fSJunchao Zhang 60269566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60279566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60289566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6030429d309bSHong Zhang } 6031ccd8e176SBarry Smith 6032cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6033cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6034ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60359779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6036a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6037191b95cbSRichard Tran Mills #endif 6038ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6039cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60405d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6041cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60425d7652ecSHong Zhang #endif 6043d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6044d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6045d24d4204SJose E. Roman #endif 604663c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 604763c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 604863c07aadSStefano Zampini #endif 60493338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60503338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60513338378cSStefano Zampini #endif 6052d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6053d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6054d5e393b6SSuyash Tandon #endif 60553d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60563d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60573d0639e7SStefano Zampini #endif 6058d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60594222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60604222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 606117667f90SBarry Smith 6062fc4dec0aSBarry Smith /* 6063fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6064fc4dec0aSBarry Smith 6065fc4dec0aSBarry Smith n p p 60662da392ccSBarry Smith [ ] [ ] [ ] 60672da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60682da392ccSBarry Smith [ ] [ ] [ ] 6069fc4dec0aSBarry Smith 6070fc4dec0aSBarry Smith */ 6071d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6072d71ae5a4SJacob Faibussowitsch { 6073fc4dec0aSBarry Smith Mat At, Bt, Ct; 6074fc4dec0aSBarry Smith 6075fc4dec0aSBarry Smith PetscFunctionBegin; 60769566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60779566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6078fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 60799566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60809566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60817fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60829566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60839566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6085fc4dec0aSBarry Smith } 6086fc4dec0aSBarry Smith 6087d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6088d71ae5a4SJacob Faibussowitsch { 60896718818eSStefano Zampini PetscBool cisdense; 6090fc4dec0aSBarry Smith 6091fc4dec0aSBarry Smith PetscFunctionBegin; 609208401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60949566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6095d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 609648a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60979566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6098f75ecaa4SHong Zhang 60994222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 61003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6101fc4dec0aSBarry Smith } 6102fc4dec0aSBarry Smith 6103d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6104d71ae5a4SJacob Faibussowitsch { 61054222ddf1SHong Zhang Mat_Product *product = C->product; 61064222ddf1SHong Zhang Mat A = product->A, B = product->B; 6107fc4dec0aSBarry Smith 6108fc4dec0aSBarry Smith PetscFunctionBegin; 610920f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 611020f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61114222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61124222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6114fc4dec0aSBarry Smith } 6115fc4dec0aSBarry Smith 6116d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6117d71ae5a4SJacob Faibussowitsch { 61184222ddf1SHong Zhang Mat_Product *product = C->product; 61194222ddf1SHong Zhang 61204222ddf1SHong Zhang PetscFunctionBegin; 612148a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61234222ddf1SHong Zhang } 6124394ed5ebSJunchao Zhang 612527430b45SBarry Smith /* 612627430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6127394ed5ebSJunchao Zhang 6128394ed5ebSJunchao Zhang Input Parameters: 6129394ed5ebSJunchao Zhang 6130651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6131651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6132394ed5ebSJunchao Zhang 6133158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6134394ed5ebSJunchao Zhang 6135394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6136394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6137394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6138394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6139394ed5ebSJunchao Zhang 6140394ed5ebSJunchao Zhang Similar for Set2. 6141394ed5ebSJunchao Zhang 6142394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6143394ed5ebSJunchao Zhang 6144158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6145394ed5ebSJunchao Zhang 6146394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6147394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6148394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6149394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6150394ed5ebSJunchao Zhang */ 6151d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6152d71ae5a4SJacob Faibussowitsch { 6153394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6154394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6155394ed5ebSJunchao Zhang 6156394ed5ebSJunchao Zhang PetscFunctionBegin; 61579566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6158394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6159394ed5ebSJunchao Zhang i[0] = 0; 6160394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6161394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6162394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6163394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6164394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6165394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6166394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6167394ed5ebSJunchao Zhang j[t] = j1[b1]; 6168394ed5ebSJunchao Zhang imap1[t1] = t; 6169394ed5ebSJunchao Zhang imap2[t2] = t; 6170394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6171394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61729371c9d4SSatish Balay t1++; 61739371c9d4SSatish Balay t2++; 61749371c9d4SSatish Balay t++; 6175394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6176394ed5ebSJunchao Zhang j[t] = j1[b1]; 6177394ed5ebSJunchao Zhang imap1[t1] = t; 6178394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61799371c9d4SSatish Balay t1++; 61809371c9d4SSatish Balay t++; 6181394ed5ebSJunchao Zhang } else { 6182394ed5ebSJunchao Zhang j[t] = j2[b2]; 6183394ed5ebSJunchao Zhang imap2[t2] = t; 6184394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61859371c9d4SSatish Balay t2++; 61869371c9d4SSatish Balay t++; 6187394ed5ebSJunchao Zhang } 6188394ed5ebSJunchao Zhang } 6189394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6190394ed5ebSJunchao Zhang while (b1 < e1) { 6191394ed5ebSJunchao Zhang j[t] = j1[b1]; 6192394ed5ebSJunchao Zhang imap1[t1] = t; 6193394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61949371c9d4SSatish Balay t1++; 61959371c9d4SSatish Balay t++; 6196394ed5ebSJunchao Zhang } 6197394ed5ebSJunchao Zhang while (b2 < e2) { 6198394ed5ebSJunchao Zhang j[t] = j2[b2]; 6199394ed5ebSJunchao Zhang imap2[t2] = t; 6200394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 62019371c9d4SSatish Balay t2++; 62029371c9d4SSatish Balay t++; 6203394ed5ebSJunchao Zhang } 62046497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6205394ed5ebSJunchao Zhang } 62063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6207394ed5ebSJunchao Zhang } 6208394ed5ebSJunchao Zhang 620927430b45SBarry Smith /* 621027430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6211394ed5ebSJunchao Zhang 6212394ed5ebSJunchao Zhang Input Parameters: 6213394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6214394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6215394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6216394ed5ebSJunchao Zhang 6217394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6218394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6219394ed5ebSJunchao Zhang 6220394ed5ebSJunchao Zhang Output Parameters: 6221394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6222394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6223394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6224394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6225394ed5ebSJunchao Zhang 6226394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6227158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6228158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6229394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6230394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6231394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6232394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6233394ed5ebSJunchao Zhang 6234394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6235394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6236394ed5ebSJunchao Zhang 6237394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6238394ed5ebSJunchao Zhang 6239158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6240394ed5ebSJunchao Zhang */ 6241d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6242d71ae5a4SJacob Faibussowitsch { 6243394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6244394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6245394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6246394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6247394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6248394ed5ebSJunchao Zhang 6249394ed5ebSJunchao Zhang PetscFunctionBegin; 62509566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62519566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6252394ed5ebSJunchao Zhang m = rend - rstart; 6253394ed5ebSJunchao Zhang 6254651b1cf9SStefano Zampini /* Skip negative rows */ 6255651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62569371c9d4SSatish Balay if (i[k] >= 0) break; 6257394ed5ebSJunchao Zhang 6258394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6259394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6260394ed5ebSJunchao Zhang */ 6261394ed5ebSJunchao Zhang while (k < n) { 6262394ed5ebSJunchao Zhang row = i[k]; 6263394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62649371c9d4SSatish Balay for (s = k; s < n; s++) 62659371c9d4SSatish Balay if (i[s] != row) break; 6266651b1cf9SStefano Zampini 6267*1690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6268394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 6269*1690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 627054c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6271394ed5ebSJunchao Zhang } 62729566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6273158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6274394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6275394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6276394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6277394ed5ebSJunchao Zhang 6278394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6279394ed5ebSJunchao Zhang Atot += mid - k; 6280394ed5ebSJunchao Zhang Btot += s - mid; 6281394ed5ebSJunchao Zhang 6282651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6283394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6284394ed5ebSJunchao Zhang col = j[p]; 62859371c9d4SSatish Balay do { 6286*1690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 62879371c9d4SSatish Balay p++; 6288651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6289394ed5ebSJunchao Zhang Annz++; 6290394ed5ebSJunchao Zhang } 6291394ed5ebSJunchao Zhang 6292651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6293394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6294394ed5ebSJunchao Zhang col = j[p]; 6295d71ae5a4SJacob Faibussowitsch do { 6296d71ae5a4SJacob Faibussowitsch p++; 6297d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6298394ed5ebSJunchao Zhang Bnnz++; 6299394ed5ebSJunchao Zhang } 6300394ed5ebSJunchao Zhang k = s; 6301394ed5ebSJunchao Zhang } 6302394ed5ebSJunchao Zhang 6303394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6304158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6305158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6306158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6307158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6308394ed5ebSJunchao Zhang 63096aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6310394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6311394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6312394ed5ebSJunchao Zhang k = rowBegin[r]; 6313394ed5ebSJunchao Zhang mid = rowMid[r]; 6314394ed5ebSJunchao Zhang s = rowEnd[r]; 63158e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63168e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6317394ed5ebSJunchao Zhang Atot += mid - k; 6318394ed5ebSJunchao Zhang Btot += s - mid; 6319394ed5ebSJunchao Zhang 6320394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6321394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6322394ed5ebSJunchao Zhang col = j[p]; 6323394ed5ebSJunchao Zhang q = p; 6324d71ae5a4SJacob Faibussowitsch do { 6325d71ae5a4SJacob Faibussowitsch p++; 6326d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6327394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6328394ed5ebSJunchao Zhang Annz++; 6329394ed5ebSJunchao Zhang } 6330394ed5ebSJunchao Zhang 6331394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6332394ed5ebSJunchao Zhang col = j[p]; 6333394ed5ebSJunchao Zhang q = p; 6334d71ae5a4SJacob Faibussowitsch do { 6335d71ae5a4SJacob Faibussowitsch p++; 6336d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6337394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6338394ed5ebSJunchao Zhang Bnnz++; 6339394ed5ebSJunchao Zhang } 6340394ed5ebSJunchao Zhang } 6341394ed5ebSJunchao Zhang /* Output */ 6342394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6343394ed5ebSJunchao Zhang *Annz_ = Annz; 6344394ed5ebSJunchao Zhang *Atot_ = Atot; 6345394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6346394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6347394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6348394ed5ebSJunchao Zhang *Btot_ = Btot; 6349394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6351394ed5ebSJunchao Zhang } 6352394ed5ebSJunchao Zhang 635327430b45SBarry Smith /* 635427430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6355158ec288SJunchao Zhang 6356158ec288SJunchao Zhang Input Parameters: 6357158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6358158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6359158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6360651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6361158ec288SJunchao Zhang 6362158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6363158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6364158ec288SJunchao Zhang 6365158ec288SJunchao Zhang Example: 6366158ec288SJunchao Zhang nnz1 = 4 6367158ec288SJunchao Zhang nnz = 6 6368158ec288SJunchao Zhang imap = [1,3,4,5] 6369158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6370158ec288SJunchao Zhang then, 6371158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6372158ec288SJunchao Zhang */ 6373d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6374d71ae5a4SJacob Faibussowitsch { 6375158ec288SJunchao Zhang PetscCount k, p; 6376158ec288SJunchao Zhang 6377158ec288SJunchao Zhang PetscFunctionBegin; 6378158ec288SJunchao Zhang jmap_new[0] = 0; 6379158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6380158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6381158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6382158ec288SJunchao Zhang } 6383158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6385158ec288SJunchao Zhang } 6386158ec288SJunchao Zhang 63872c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data) 63882c4ab24aSJunchao Zhang { 63892c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data; 63902c4ab24aSJunchao Zhang 63912c4ab24aSJunchao Zhang PetscFunctionBegin; 63922c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63932c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63942c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63952c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63962c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63972c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63982c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63992c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 64002c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 64012c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 64022c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 64032c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 64042c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 64052c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 64062c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64072c4ab24aSJunchao Zhang } 64082c4ab24aSJunchao Zhang 6409d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6410d71ae5a4SJacob Faibussowitsch { 6411394ed5ebSJunchao Zhang MPI_Comm comm; 6412394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6413394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6414394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6415394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64162c4ab24aSJunchao Zhang PetscContainer container; 64172c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6418394ed5ebSJunchao Zhang 6419394ed5ebSJunchao Zhang PetscFunctionBegin; 64209566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6422cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6423eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6424cbc6b225SStefano Zampini #else 64259566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6426cbc6b225SStefano Zampini #endif 64279566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6428cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6429cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6430cbc6b225SStefano Zampini 64319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64369566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64379566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64389566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64399566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6440394ed5ebSJunchao Zhang 64416aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6442394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6443394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6444e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6445e8729f6fSJunchao Zhang 6446e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6447394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6448394ed5ebSJunchao Zhang 6449394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6450394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6451394ed5ebSJunchao Zhang will have positive row indices. 6452394ed5ebSJunchao Zhang */ 6453394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 6454*1690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 6455*1690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6456f7d195e4SLawrence Mitchell else { 6457f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 6458*1690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6459f7d195e4SLawrence Mitchell } 6460394ed5ebSJunchao Zhang } 6461394ed5ebSJunchao Zhang 6462da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64639566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6464651b1cf9SStefano Zampini 6465651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6466651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 6467*1690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 64686497c311SBarry Smith PetscCount i1start = k; 6469651b1cf9SStefano Zampini 6470*1690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 6471*1690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6472394ed5ebSJunchao Zhang 6473394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6474394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6475394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6476394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6477394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6478394ed5ebSJunchao Zhang const PetscInt *ranges; 6479394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6480394ed5ebSJunchao Zhang 64819566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64829566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6483394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6484394ed5ebSJunchao Zhang PetscMPIInt owner; 6485394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6486cbc6b225SStefano Zampini 6487394ed5ebSJunchao Zhang /* Locate a row range */ 6488394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64899566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6490394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6491394ed5ebSJunchao Zhang 6492394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64939566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6494394ed5ebSJunchao Zhang 6495394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6496394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6497394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6498394ed5ebSJunchao Zhang PetscInt *nentries2; 6499394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6500cbc6b225SStefano Zampini 65019566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 65029566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 65039566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 65049566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6505394ed5ebSJunchao Zhang sendto = sendto2; 6506394ed5ebSJunchao Zhang nentries = nentries2; 6507394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6508394ed5ebSJunchao Zhang } 6509394ed5ebSJunchao Zhang sendto[nsend] = owner; 65106497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6511394ed5ebSJunchao Zhang nsend++; 6512394ed5ebSJunchao Zhang k = p; 6513394ed5ebSJunchao Zhang } 6514394ed5ebSJunchao Zhang 6515394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6516394ed5ebSJunchao Zhang PetscSF sf1; 6517394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6518394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6519394ed5ebSJunchao Zhang PetscInt *offsets; 6520394ed5ebSJunchao Zhang PetscSFNode *iremote; 6521394ed5ebSJunchao Zhang 65229566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6525394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6526394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6527394ed5ebSJunchao Zhang iremote[k].index = 0; 6528394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 652954c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6530394ed5ebSJunchao Zhang } 65319566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65329566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65339566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65349566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6535e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6536394ed5ebSJunchao Zhang 6537394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6538394ed5ebSJunchao Zhang PetscSF sf2; 6539394ed5ebSJunchao Zhang nroots = nroots2; 6540394ed5ebSJunchao Zhang nleaves = nleaves2; 65419566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65429566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6544394ed5ebSJunchao Zhang p = 0; 6545394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 654654c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6547394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6548394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 65496497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6550394ed5ebSJunchao Zhang } 6551394ed5ebSJunchao Zhang } 65529566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6553394ed5ebSJunchao Zhang 6554394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6555394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6556394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65579566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6558834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6559834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6560de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6561de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6562834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6563834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6564834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6565834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6566394ed5ebSJunchao Zhang 65679566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65689566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6569394ed5ebSJunchao Zhang 6570394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6571394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65729566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6573394ed5ebSJunchao Zhang 6574651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6575651b1cf9SStefano Zampini PetscCount *Cperm1; 6576834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6577de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6578651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6579834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6580651b1cf9SStefano Zampini 6581651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6582651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6583651b1cf9SStefano Zampini PetscBool hypre; 658417b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6585651b1cf9SStefano Zampini if (hypre) { 6586651b1cf9SStefano Zampini PetscInt *minj; 6587651b1cf9SStefano Zampini PetscBT hasdiag; 6588651b1cf9SStefano Zampini 6589651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6590651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 6591*1690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6592651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6593651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6594651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6595651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6596651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6597651b1cf9SStefano Zampini } 6598651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6599651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6600651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6601651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6602651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6603651b1cf9SStefano Zampini } 6604651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6605651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6606651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6607651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6608651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6609651b1cf9SStefano Zampini } 6610651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6611651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6612651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6613651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6614651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6615651b1cf9SStefano Zampini } 6616651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6617651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6618651b1cf9SStefano Zampini } 6619651b1cf9SStefano Zampini 6620651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6621651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6622651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6623651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6624394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6625394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6626394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6627394ed5ebSJunchao Zhang 6628651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66299566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6630651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66319566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6632394ed5ebSJunchao Zhang 6633394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6634394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6635394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6636394ed5ebSJunchao Zhang 66379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6641394ed5ebSJunchao Zhang 6642394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6643158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6644158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6645158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6646158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6647394ed5ebSJunchao Zhang 66489566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66499566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6650158ec288SJunchao Zhang 6651158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6652158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6653158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6654158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6655158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6656158ec288SJunchao Zhang 6657158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6658158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6659158ec288SJunchao Zhang 6660158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6661158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6662158ec288SJunchao Zhang 6663158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6664158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6665158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6666158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66679566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66689566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6669e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66709566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6671394ed5ebSJunchao Zhang 6672158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6673158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6674158ec288SJunchao Zhang 6675394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6676394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6677394ed5ebSJunchao Zhang PetscInt *Aj_new; 66789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66799566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66809566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6681394ed5ebSJunchao Zhang Aj = Aj_new; 6682394ed5ebSJunchao Zhang } 6683394ed5ebSJunchao Zhang 6684394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6685394ed5ebSJunchao Zhang PetscInt *Bj_new; 66869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66879566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66889566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6689394ed5ebSJunchao Zhang Bj = Bj_new; 6690394ed5ebSJunchao Zhang } 6691394ed5ebSJunchao Zhang 6692cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6693394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6694cbc6b225SStefano Zampini MatType rtype; 6695394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6696cf8ba265SJunchao Zhang PetscObjectState state; 66979566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66989566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6699394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 67009371c9d4SSatish Balay if (cstart) { 67019371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 67029371c9d4SSatish Balay } 6703c508b908SBarry Smith 67049566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6705c508b908SBarry Smith 6706c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6707c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 67089566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 67090da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6710c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6711c508b908SBarry Smith 6712c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6713c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 67149566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67150da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6716c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6717c508b908SBarry Smith 67189566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67195bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6720cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6721cf8ba265SJunchao Zhang PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6722cbc6b225SStefano Zampini 6723394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6724394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 67259f0612e4SBarry Smith a->free_a = PETSC_TRUE; 67269f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 67279f0612e4SBarry Smith b->free_a = PETSC_TRUE; 67289f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 672917b874c6SStefano Zampini a->maxnz = a->nz; 673017b874c6SStefano Zampini b->maxnz = b->nz; 6731394ed5ebSJunchao Zhang 6732cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67339566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67349566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67359566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67369566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6737cbc6b225SStefano Zampini 67382c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67392c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67402c4ab24aSJunchao Zhang coo->n = coo_n; 67412c4ab24aSJunchao Zhang coo->sf = sf2; 67422c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67432c4ab24aSJunchao Zhang coo->recvlen = nroots; 67442c4ab24aSJunchao Zhang coo->Annz = Annz; 67452c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67462c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67472c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67482c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67492c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67502c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67512c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67522c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67532c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67542c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67552c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67562c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67572c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67582c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67592c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67602c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67612c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67622c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67632c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67642c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67652c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67662c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 67672c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67682c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67692c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6771394ed5ebSJunchao Zhang } 6772394ed5ebSJunchao Zhang 6773d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6774d71ae5a4SJacob Faibussowitsch { 6775394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6776394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6777394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67782c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67792c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67802c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67812c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67822c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67832c4ab24aSJunchao Zhang PetscContainer container; 67842c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6785394ed5ebSJunchao Zhang 6786394ed5ebSJunchao Zhang PetscFunctionBegin; 67872c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67882c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67892c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67902c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67912c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67922c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67932c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67942c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67952c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67962c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67972c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67982c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67992c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 68002c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 68012c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 68022c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 68032c4ab24aSJunchao Zhang 68049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 68059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6806394ed5ebSJunchao Zhang 6807394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 68082c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6809394ed5ebSJunchao Zhang 6810394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 68112c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6812394ed5ebSJunchao Zhang /* Add local entries to A and B */ 68132c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6814da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6815158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6816158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6817394ed5ebSJunchao Zhang } 68182c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6819158ec288SJunchao Zhang PetscScalar sum = 0.0; 6820158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6821158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6822394ed5ebSJunchao Zhang } 68232c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6824394ed5ebSJunchao Zhang 6825394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68262c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6827394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6828394ed5ebSJunchao Zhang } 68292c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6830394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6831394ed5ebSJunchao Zhang } 68329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6835394ed5ebSJunchao Zhang } 6836394ed5ebSJunchao Zhang 6837ccd8e176SBarry Smith /*MC 6838ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6839ccd8e176SBarry Smith 6840ccd8e176SBarry Smith Options Database Keys: 684111a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6842ccd8e176SBarry Smith 6843ccd8e176SBarry Smith Level: beginner 68440cd7f59aSBarry Smith 68450cd7f59aSBarry Smith Notes: 68462ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68470cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68480cd7f59aSBarry Smith in the matrix 68490cd7f59aSBarry Smith 685011a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 685111a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6852ccd8e176SBarry Smith 68531cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6854ccd8e176SBarry Smith M*/ 6855d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6856d71ae5a4SJacob Faibussowitsch { 6857ccd8e176SBarry Smith Mat_MPIAIJ *b; 6858ccd8e176SBarry Smith PetscMPIInt size; 6859ccd8e176SBarry Smith 6860ccd8e176SBarry Smith PetscFunctionBegin; 68619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68622205254eSKarl Rupp 68634dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6864ccd8e176SBarry Smith B->data = (void *)b; 6865aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6866ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6867ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6868ccd8e176SBarry Smith b->size = size; 68692205254eSKarl Rupp 68709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6871ccd8e176SBarry Smith 6872ccd8e176SBarry Smith /* build cache for off array entries formed */ 68739566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68742205254eSKarl Rupp 6875ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6876f4259b30SLisandro Dalcin b->colmap = NULL; 6877f4259b30SLisandro Dalcin b->garray = NULL; 6878ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6879ccd8e176SBarry Smith 6880ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68810298fd71SBarry Smith b->lvec = NULL; 68820298fd71SBarry Smith b->Mvctx = NULL; 6883ccd8e176SBarry Smith 6884ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6885f4259b30SLisandro Dalcin b->rowindices = NULL; 6886f4259b30SLisandro Dalcin b->rowvalues = NULL; 6887ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6888ccd8e176SBarry Smith 6889f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68900298fd71SBarry Smith b->spptr = NULL; 6891f60c3dc2SHong Zhang 68929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 68989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 69009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 69019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 69023d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 69039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 69043d0639e7SStefano Zampini #endif 6905d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6906d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6907d5e393b6SSuyash Tandon #endif 69083d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 69099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 69103d0639e7SStefano Zampini #endif 69119779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 69129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6913191b95cbSRichard Tran Mills #endif 69149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 69159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 69169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 69179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69185d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69205d7652ecSHong Zhang #endif 6921d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6923d24d4204SJose E. Roman #endif 69249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69263dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69293dad0653Sstefano_zampini #endif 69309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69349566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6936ccd8e176SBarry Smith } 693781824310SBarry Smith 69385d83a8b1SBarry Smith /*@ 693911a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 694003bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 694103bfb495SBarry Smith 6942d083f849SBarry Smith Collective 694303bfb495SBarry Smith 694403bfb495SBarry Smith Input Parameters: 694503bfb495SBarry Smith + comm - MPI communicator 694611a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 694703bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6948d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69492ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69502ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69512ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6952483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 695304ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 695403bfb495SBarry Smith . a - matrix values 6955483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69562ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 695703bfb495SBarry Smith - oa - matrix values 695803bfb495SBarry Smith 695903bfb495SBarry Smith Output Parameter: 696003bfb495SBarry Smith . mat - the matrix 696103bfb495SBarry Smith 696203bfb495SBarry Smith Level: advanced 696303bfb495SBarry Smith 696403bfb495SBarry Smith Notes: 6965f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6966292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 696703bfb495SBarry Smith 69682ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 696903bfb495SBarry Smith 69702ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 697103bfb495SBarry Smith 69727b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69737b55108eSBarry Smith 6974dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6975dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6976dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6977dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 697811a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6979dca341c0SJed Brown communication if it is known that only local entries will be set. 698003bfb495SBarry Smith 69811cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6982db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69832b26979fSBarry Smith @*/ 6984d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6985d71ae5a4SJacob Faibussowitsch { 698603bfb495SBarry Smith Mat_MPIAIJ *maij; 698703bfb495SBarry Smith 698803bfb495SBarry Smith PetscFunctionBegin; 698908401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6990aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6991aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69929566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69949566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 699503bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69962205254eSKarl Rupp 69978d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 699803bfb495SBarry Smith 69999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 70009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 700103bfb495SBarry Smith 70029566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 70039566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 700403bfb495SBarry Smith 70059566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 70069566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 70079566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 70089566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 70099566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 70103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 701103bfb495SBarry Smith } 701203bfb495SBarry Smith 70134e84afc0SStefano Zampini typedef struct { 70144e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 70154e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 70164e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 70174e84afc0SStefano Zampini 70184e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70194e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70204e84afc0SStefano Zampini PetscScalar *bufa; 70214e84afc0SStefano Zampini Mat P_oth; 70224e84afc0SStefano Zampini 70234e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7024ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70254e84afc0SStefano Zampini 7026ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70274e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70284e84afc0SStefano Zampini of the temporary storage */ 70294e84afc0SStefano Zampini PetscBool reusesym; 70304e84afc0SStefano Zampini 70314e84afc0SStefano Zampini /* support for COO values insertion */ 7032ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7033ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7034ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7035ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7036c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7037c215019aSStefano Zampini PetscMemType mtype; 70384e84afc0SStefano Zampini 70394e84afc0SStefano Zampini /* customization */ 70404e84afc0SStefano Zampini PetscBool abmerge; 7041abb89eb1SStefano Zampini PetscBool P_oth_bind; 70424e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70434e84afc0SStefano Zampini 7044ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7045d71ae5a4SJacob Faibussowitsch { 70464e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70474e84afc0SStefano Zampini PetscInt i; 70484e84afc0SStefano Zampini 70494e84afc0SStefano Zampini PetscFunctionBegin; 70509566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70519566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70529566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70539566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70549566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70559566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70569566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 705748a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70589566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70599566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70609566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70619566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70629566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70639566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70654e84afc0SStefano Zampini } 70664e84afc0SStefano Zampini 7067fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7068fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7069fff043a9SJunchao Zhang */ 7070d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7071d71ae5a4SJacob Faibussowitsch { 7072c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7073c215019aSStefano Zampini 7074c215019aSStefano Zampini PetscFunctionBegin; 70759566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7076c215019aSStefano Zampini if (f) { 70779566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7078c215019aSStefano Zampini } else { 7079c215019aSStefano Zampini const PetscScalar *vv; 7080c215019aSStefano Zampini 70819566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7082c215019aSStefano Zampini if (n && idx) { 7083c215019aSStefano Zampini PetscScalar *w = v; 7084c215019aSStefano Zampini const PetscInt *oi = idx; 7085c215019aSStefano Zampini PetscInt j; 7086c215019aSStefano Zampini 7087c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7088c215019aSStefano Zampini } else { 70899566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7090c215019aSStefano Zampini } 70919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7092c215019aSStefano Zampini } 70933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7094c215019aSStefano Zampini } 7095c215019aSStefano Zampini 7096d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7097d71ae5a4SJacob Faibussowitsch { 70984e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70994e84afc0SStefano Zampini PetscInt i, n_d, n_o; 71004e84afc0SStefano Zampini 71014e84afc0SStefano Zampini PetscFunctionBegin; 71024e84afc0SStefano Zampini MatCheckProduct(C, 1); 710328b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 71044e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 71054e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 710648a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 710748a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 71084e84afc0SStefano Zampini } 71094e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7110abb89eb1SStefano Zampini 7111abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 711208401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 71139566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7114abb89eb1SStefano Zampini } 71154e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 71166497c311SBarry Smith PetscInt noff; 71174e84afc0SStefano Zampini 71186497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 71194e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71204e84afc0SStefano Zampini if (noff) { 71216497c311SBarry Smith PetscInt nown; 7122c215019aSStefano Zampini 71236497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 71249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71264e84afc0SStefano Zampini n_o += noff; 71274e84afc0SStefano Zampini n_d += nown; 71284e84afc0SStefano Zampini } else { 7129c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7130c215019aSStefano Zampini 71319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71324e84afc0SStefano Zampini n_d += mm->nz; 71334e84afc0SStefano Zampini } 71344e84afc0SStefano Zampini } 7135c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71369566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71379566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71384e84afc0SStefano Zampini } 71399566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71414e84afc0SStefano Zampini } 71424e84afc0SStefano Zampini 71434e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71444e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7145d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7146d71ae5a4SJacob Faibussowitsch { 71474e84afc0SStefano Zampini Mat_Product *product = C->product; 7148ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71494e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71504e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71514e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71524e84afc0SStefano Zampini IS glob = NULL; 71534e84afc0SStefano Zampini const char *prefix; 71544e84afc0SStefano Zampini char pprefix[256]; 71554e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 715682a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 715782a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7158ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7159ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7160ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7161ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7162ddea5d60SJunchao Zhang 71634e84afc0SStefano Zampini MatProductType ptype; 7164d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71654e84afc0SStefano Zampini PetscMPIInt size; 71664e84afc0SStefano Zampini 71674e84afc0SStefano Zampini PetscFunctionBegin; 71684e84afc0SStefano Zampini MatCheckProduct(C, 1); 716928b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71704e84afc0SStefano Zampini ptype = product->type; 7171b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7172fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7173fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7174fa046f9fSJunchao Zhang } 71754e84afc0SStefano Zampini switch (ptype) { 71764e84afc0SStefano Zampini case MATPRODUCT_AB: 71774e84afc0SStefano Zampini A = product->A; 71784e84afc0SStefano Zampini P = product->B; 71794e84afc0SStefano Zampini m = A->rmap->n; 71804e84afc0SStefano Zampini n = P->cmap->n; 71814e84afc0SStefano Zampini M = A->rmap->N; 71824e84afc0SStefano Zampini N = P->cmap->N; 7183ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71844e84afc0SStefano Zampini break; 71854e84afc0SStefano Zampini case MATPRODUCT_AtB: 71864e84afc0SStefano Zampini P = product->A; 71874e84afc0SStefano Zampini A = product->B; 71884e84afc0SStefano Zampini m = P->cmap->n; 71894e84afc0SStefano Zampini n = A->cmap->n; 71904e84afc0SStefano Zampini M = P->cmap->N; 71914e84afc0SStefano Zampini N = A->cmap->N; 71924e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71934e84afc0SStefano Zampini break; 71944e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71954e84afc0SStefano Zampini A = product->A; 71964e84afc0SStefano Zampini P = product->B; 71974e84afc0SStefano Zampini m = P->cmap->n; 71984e84afc0SStefano Zampini n = P->cmap->n; 71994e84afc0SStefano Zampini M = P->cmap->N; 72004e84afc0SStefano Zampini N = P->cmap->N; 72014e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 72024e84afc0SStefano Zampini break; 7203d71ae5a4SJacob Faibussowitsch default: 7204d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 72054e84afc0SStefano Zampini } 72069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 72074e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 72084e84afc0SStefano Zampini 72094e84afc0SStefano Zampini /* defaults */ 72104e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 72114e84afc0SStefano Zampini mp[i] = NULL; 72124e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 72134e84afc0SStefano Zampini rmapt[i] = -1; 72144e84afc0SStefano Zampini cmapt[i] = -1; 72154e84afc0SStefano Zampini rmapa[i] = NULL; 72164e84afc0SStefano Zampini cmapa[i] = NULL; 72174e84afc0SStefano Zampini } 72184e84afc0SStefano Zampini 72194e84afc0SStefano Zampini /* customization */ 72209566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72214e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72224e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72234e84afc0SStefano Zampini if (product->api_user) { 7224d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72259566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72269566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7227d0609cedSBarry Smith PetscOptionsEnd(); 72284e84afc0SStefano Zampini } else { 7229d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72309566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72319566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7232d0609cedSBarry Smith PetscOptionsEnd(); 7233abb89eb1SStefano Zampini } 7234abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7235abb89eb1SStefano Zampini if (product->api_user) { 7236d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72379566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7238d0609cedSBarry Smith PetscOptionsEnd(); 7239abb89eb1SStefano Zampini } else { 7240d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72419566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7242d0609cedSBarry Smith PetscOptionsEnd(); 72434e84afc0SStefano Zampini } 72444e84afc0SStefano Zampini } 72454e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72464e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72479566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72489566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72499566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72509566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72519566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7252ddea5d60SJunchao Zhang 7253ddea5d60SJunchao Zhang cp = 0; 72544e84afc0SStefano Zampini switch (ptype) { 72554e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72569566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72574e84afc0SStefano Zampini 7258ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7259ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72604e84afc0SStefano Zampini /* P is product->B */ 72619566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72629566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72639566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72649566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72659566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72669566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72679566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72684e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72699566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72709566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72719566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72724e84afc0SStefano Zampini rmapt[cp] = 1; 72734e84afc0SStefano Zampini cmapt[cp] = 2; 72744e84afc0SStefano Zampini cmapa[cp] = globidx; 72754e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72764e84afc0SStefano Zampini cp++; 7277ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72789566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72799566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72809566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72819566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72829566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72839566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72844e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72859566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72869566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72874e84afc0SStefano Zampini rmapt[cp] = 1; 72884e84afc0SStefano Zampini cmapt[cp] = 1; 72894e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72904e84afc0SStefano Zampini cp++; 72919566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72929566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72939566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72949566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72959566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72969566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72974e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72989566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72999566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73004e84afc0SStefano Zampini rmapt[cp] = 1; 73014e84afc0SStefano Zampini cmapt[cp] = 2; 73024e84afc0SStefano Zampini cmapa[cp] = p->garray; 73034e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73044e84afc0SStefano Zampini cp++; 73054e84afc0SStefano Zampini } 7306ddea5d60SJunchao Zhang 7307ddea5d60SJunchao Zhang /* A_off * P_other */ 73084e84afc0SStefano Zampini if (mmdata->P_oth) { 73099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 73109566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7311f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73129566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73139566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73149566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73159566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73169566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73179566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73189566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73194e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73209566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73219566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73224e84afc0SStefano Zampini rmapt[cp] = 1; 73234e84afc0SStefano Zampini cmapt[cp] = 2; 73244e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73254e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73264e84afc0SStefano Zampini cp++; 73274e84afc0SStefano Zampini } 73284e84afc0SStefano Zampini break; 7329ddea5d60SJunchao Zhang 73304e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73314e84afc0SStefano Zampini /* A is product->B */ 73329566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7333ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73349566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73359566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73369566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73379566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73389566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73399566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73404e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73419566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73429566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73439566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73444e84afc0SStefano Zampini rmapt[cp] = 2; 73454e84afc0SStefano Zampini rmapa[cp] = globidx; 73464e84afc0SStefano Zampini cmapt[cp] = 2; 73474e84afc0SStefano Zampini cmapa[cp] = globidx; 73484e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73494e84afc0SStefano Zampini cp++; 73504e84afc0SStefano Zampini } else { 73519566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73529566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73539566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73549566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73559566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73569566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73574e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73589566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73599566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73614e84afc0SStefano Zampini rmapt[cp] = 1; 73624e84afc0SStefano Zampini cmapt[cp] = 2; 73634e84afc0SStefano Zampini cmapa[cp] = globidx; 73644e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73654e84afc0SStefano Zampini cp++; 73669566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73679566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73689566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73699566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73709566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73719566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73724e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73739566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73749566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73754e84afc0SStefano Zampini rmapt[cp] = 2; 73764e84afc0SStefano Zampini rmapa[cp] = p->garray; 73774e84afc0SStefano Zampini cmapt[cp] = 2; 73784e84afc0SStefano Zampini cmapa[cp] = globidx; 73794e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73804e84afc0SStefano Zampini cp++; 73814e84afc0SStefano Zampini } 73824e84afc0SStefano Zampini break; 73834e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73849566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73854e84afc0SStefano Zampini /* P is product->B */ 73869566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73879566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73889566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73899566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73909566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73919566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73929566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73934e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73949566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73959566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73969566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73974e84afc0SStefano Zampini rmapt[cp] = 2; 73984e84afc0SStefano Zampini rmapa[cp] = globidx; 73994e84afc0SStefano Zampini cmapt[cp] = 2; 74004e84afc0SStefano Zampini cmapa[cp] = globidx; 74014e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74024e84afc0SStefano Zampini cp++; 74034e84afc0SStefano Zampini if (mmdata->P_oth) { 74049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 74059566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7406f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 74079566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 74089566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 74099566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 74109566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74119566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74129566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74139566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74144e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74159566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74169566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74174e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 74184e84afc0SStefano Zampini cp++; 74199566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74209566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74219566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74229566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74239566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74249566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74254e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74269566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74279566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74284e84afc0SStefano Zampini rmapt[cp] = 2; 74294e84afc0SStefano Zampini rmapa[cp] = globidx; 74304e84afc0SStefano Zampini cmapt[cp] = 2; 74314e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74324e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74334e84afc0SStefano Zampini cp++; 74344e84afc0SStefano Zampini } 74354e84afc0SStefano Zampini break; 7436d71ae5a4SJacob Faibussowitsch default: 7437d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74384e84afc0SStefano Zampini } 74394e84afc0SStefano Zampini /* sanity check */ 74409371c9d4SSatish Balay if (size > 1) 74419371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74424e84afc0SStefano Zampini 74439566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7444ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7445ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7446ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7447ddea5d60SJunchao Zhang } 74484e84afc0SStefano Zampini mmdata->cp = cp; 74494e84afc0SStefano Zampini C->product->data = mmdata; 74504e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74514e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74524e84afc0SStefano Zampini 7453c215019aSStefano Zampini /* memory type */ 7454c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74559566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7456d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7458c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7459d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74603214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7461c215019aSStefano Zampini 74624e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7463ddea5d60SJunchao Zhang 7464ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7465ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7466ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7467ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7468ddea5d60SJunchao Zhang */ 74694e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74704e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74714e84afc0SStefano Zampini if (mptmp[cp]) continue; 7472ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74734e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74744e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74754e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74764e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74774e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74784e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74794e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74804e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7481ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7482ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74834e84afc0SStefano Zampini } 74844e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74854e84afc0SStefano Zampini } 7486ddea5d60SJunchao Zhang 7487ddea5d60SJunchao Zhang /* 7488ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7489ddea5d60SJunchao Zhang 7490ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7491ddea5d60SJunchao Zhang 7492d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7493ddea5d60SJunchao Zhang 7494ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7495ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7496ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7497ddea5d60SJunchao Zhang 7498ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7499da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7500ddea5d60SJunchao Zhang */ 75019566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 75029566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7503ddea5d60SJunchao Zhang 7504ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7505ddea5d60SJunchao Zhang if (hasoffproc) { 75064e84afc0SStefano Zampini PetscSF msf; 75074e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 75084e84afc0SStefano Zampini 75099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 75109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 75119566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7512ddea5d60SJunchao Zhang 75134e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 75144e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75154e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 75164e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7517ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 75184e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75194e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75204e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75214e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75224e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75234e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75244e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75254e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75264e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75274e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75284e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75294e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75304e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7531ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75324e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75334e84afc0SStefano Zampini *coi++ = gr; 75344e84afc0SStefano Zampini *idxoff++ = j; 75354e84afc0SStefano Zampini } 75364e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75374e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75384e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75394e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75404e84afc0SStefano Zampini } else { /* offdiag */ 75414e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75424e84afc0SStefano Zampini } 75434e84afc0SStefano Zampini ncoo_o += nz; 7544ddea5d60SJunchao Zhang } else { /* this is a local row */ 75454e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75464e84afc0SStefano Zampini } 75474e84afc0SStefano Zampini } 75484e84afc0SStefano Zampini } 75494e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75504e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75514e84afc0SStefano Zampini } 75524e84afc0SStefano Zampini 75539566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75546497c311SBarry Smith PetscInt incoo_o; 75556497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 75566497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75579566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75589566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75594e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75609566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75619566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75629566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75639566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75649566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75659566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7566ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75679566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75684e84afc0SStefano Zampini coo_i = coo_i2; 75694e84afc0SStefano Zampini coo_j = coo_j2; 75704e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75714e84afc0SStefano Zampini ncoo = ncoo_d; 75729566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7573c215019aSStefano Zampini 75749566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75759566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75769566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75774e84afc0SStefano Zampini } 7578c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75794e84afc0SStefano Zampini 7580ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75814e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75824e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75834e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75844e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75854e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75864e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75874e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75884e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75894e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75904e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75914e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75924e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75934e84afc0SStefano Zampini 75944e84afc0SStefano Zampini if (mptmp[cp]) continue; 7595ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7596ddea5d60SJunchao Zhang /* fill coo_i */ 75974e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75984e84afc0SStefano Zampini const PetscInt gr = i + rs; 75994e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 76004e84afc0SStefano Zampini } 7601ddea5d60SJunchao Zhang /* fill coo_j */ 7602ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76039566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7604ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7605ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7606ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76074e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 76084e84afc0SStefano Zampini } 76094e84afc0SStefano Zampini ncoo_d += mm->nz; 7610ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 76114e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76124e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 76134e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 76144e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7615ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 76164e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7617ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76184e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 76194e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 76204e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7621ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76224e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76234e84afc0SStefano Zampini } 76244e84afc0SStefano Zampini ncoo_d += nz; 76254e84afc0SStefano Zampini } 76264e84afc0SStefano Zampini } 76274e84afc0SStefano Zampini } 76284e84afc0SStefano Zampini } 762948a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76309566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 763148a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76329566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7633ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76349566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76354e84afc0SStefano Zampini 76364e84afc0SStefano Zampini /* preallocate with COO data */ 76379566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76389566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76404e84afc0SStefano Zampini } 76414e84afc0SStefano Zampini 7642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7643d71ae5a4SJacob Faibussowitsch { 76444e84afc0SStefano Zampini Mat_Product *product = mat->product; 76454e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76464e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7647abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76484e84afc0SStefano Zampini #else 76494e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76504e84afc0SStefano Zampini #endif 76514e84afc0SStefano Zampini 76524e84afc0SStefano Zampini PetscFunctionBegin; 76534e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76544e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 765548a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 765665e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7657abb89eb1SStefano Zampini switch (product->type) { 7658abb89eb1SStefano Zampini case MATPRODUCT_AB: 7659abb89eb1SStefano Zampini if (product->api_user) { 7660d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76619566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7662d0609cedSBarry Smith PetscOptionsEnd(); 7663abb89eb1SStefano Zampini } else { 7664d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76659566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7666d0609cedSBarry Smith PetscOptionsEnd(); 7667abb89eb1SStefano Zampini } 7668abb89eb1SStefano Zampini break; 7669abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7670abb89eb1SStefano Zampini if (product->api_user) { 7671d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76729566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7673d0609cedSBarry Smith PetscOptionsEnd(); 7674abb89eb1SStefano Zampini } else { 7675d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76769566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7677d0609cedSBarry Smith PetscOptionsEnd(); 7678abb89eb1SStefano Zampini } 7679abb89eb1SStefano Zampini break; 7680abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7681abb89eb1SStefano Zampini if (product->api_user) { 7682d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76839566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7684d0609cedSBarry Smith PetscOptionsEnd(); 7685abb89eb1SStefano Zampini } else { 7686d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76879566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7688d0609cedSBarry Smith PetscOptionsEnd(); 7689abb89eb1SStefano Zampini } 7690abb89eb1SStefano Zampini break; 7691d71ae5a4SJacob Faibussowitsch default: 7692d71ae5a4SJacob Faibussowitsch break; 7693abb89eb1SStefano Zampini } 7694abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7695abb89eb1SStefano Zampini } 76964e84afc0SStefano Zampini #endif 76974e84afc0SStefano Zampini if (match) { 76984e84afc0SStefano Zampini switch (product->type) { 76994e84afc0SStefano Zampini case MATPRODUCT_AB: 77004e84afc0SStefano Zampini case MATPRODUCT_AtB: 7701d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7702d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7703d71ae5a4SJacob Faibussowitsch break; 7704d71ae5a4SJacob Faibussowitsch default: 7705d71ae5a4SJacob Faibussowitsch break; 77064e84afc0SStefano Zampini } 77074e84afc0SStefano Zampini } 77084e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 77099566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 77103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771181824310SBarry Smith } 771298921bdaSJacob Faibussowitsch 771398921bdaSJacob Faibussowitsch /* 771472833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 771572833a62Smarkadams4 771672833a62Smarkadams4 n - the number of block indices in cc[] 771772833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 771872833a62Smarkadams4 */ 7719d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7720d71ae5a4SJacob Faibussowitsch { 772172833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 772272833a62Smarkadams4 const PetscInt *idx; 772372833a62Smarkadams4 772472833a62Smarkadams4 PetscFunctionBegin; 772572833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 772672833a62Smarkadams4 if (nidx) { 772772833a62Smarkadams4 cnt = 0; 772872833a62Smarkadams4 cc[cnt] = idx[0] / bs; 772972833a62Smarkadams4 for (j = 1; j < nidx; j++) { 773072833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 773172833a62Smarkadams4 } 773272833a62Smarkadams4 } 773372833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 773472833a62Smarkadams4 *n = cnt + 1; 77353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 773672833a62Smarkadams4 } 773772833a62Smarkadams4 773872833a62Smarkadams4 /* 773972833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 774072833a62Smarkadams4 774172833a62Smarkadams4 ncollapsed - the number of block indices 774272833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 774372833a62Smarkadams4 */ 7744d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7745d71ae5a4SJacob Faibussowitsch { 774672833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 774772833a62Smarkadams4 774872833a62Smarkadams4 PetscFunctionBegin; 774972833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 775072833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 775172833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 775272833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77539371c9d4SSatish Balay cprevtmp = cprev; 77549371c9d4SSatish Balay cprev = merged; 77559371c9d4SSatish Balay merged = cprevtmp; 775672833a62Smarkadams4 } 775772833a62Smarkadams4 *ncollapsed = nprev; 775872833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 776072833a62Smarkadams4 } 776172833a62Smarkadams4 77622d776b49SBarry Smith /* 776372833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 776472833a62Smarkadams4 776572833a62Smarkadams4 Input Parameter: 776672833a62Smarkadams4 . Amat - matrix 776772833a62Smarkadams4 - symmetrize - make the result symmetric 776872833a62Smarkadams4 + scale - scale with diagonal 776972833a62Smarkadams4 777072833a62Smarkadams4 Output Parameter: 777172833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 777272833a62Smarkadams4 777372833a62Smarkadams4 */ 7774e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7775d71ae5a4SJacob Faibussowitsch { 777672833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 777772833a62Smarkadams4 MPI_Comm comm; 777872833a62Smarkadams4 Mat Gmat; 777972833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 778072833a62Smarkadams4 Mat a, b, c; 778172833a62Smarkadams4 MatType jtype; 778272833a62Smarkadams4 778372833a62Smarkadams4 PetscFunctionBegin; 778472833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 778572833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 778672833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 778772833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 778872833a62Smarkadams4 nloc = (Iend - Istart) / bs; 778972833a62Smarkadams4 779072833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 779172833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 779272833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 779372833a62Smarkadams4 779472833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 779572833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 779672833a62Smarkadams4 implementation */ 779772833a62Smarkadams4 if (bs > 1) { 779872833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 779972833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 780072833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 780172833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 780272833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 780372833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 780472833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 78052cf69117Smarkadams4 MatScalar *aa, val, *AA; 78062cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 78076497c311SBarry Smith 78089371c9d4SSatish Balay if (isseqaij) { 78099371c9d4SSatish Balay a = Amat; 78109371c9d4SSatish Balay b = NULL; 78119371c9d4SSatish Balay } else { 781272833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 78139371c9d4SSatish Balay a = d->A; 78149371c9d4SSatish Balay b = d->B; 781572833a62Smarkadams4 } 781672833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 781772833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 781872833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 78192cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 782059ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 78216497c311SBarry Smith 782259ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 782359ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 782459ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 782559ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 782672833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 782759ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 782859ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 782959ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 783059ee9f9fSPierre Jolivet else { 783159ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 783259ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 783359ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 783472833a62Smarkadams4 } 783559ee9f9fSPierre Jolivet } 783659ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 783759ee9f9fSPierre Jolivet } 783859ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 783972833a62Smarkadams4 if (!ok) { 784072833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 784159ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 784272833a62Smarkadams4 goto old_bs; 784372833a62Smarkadams4 } 784472833a62Smarkadams4 } 784572833a62Smarkadams4 } 784672833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 784772833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 784872833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78492cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 785072833a62Smarkadams4 // diag 785172833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 785272833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 78536497c311SBarry Smith 785472833a62Smarkadams4 ai = aseq->i; 785572833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 785672833a62Smarkadams4 aj = aseq->j + ai[brow]; 78576497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 785872833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 785972833a62Smarkadams4 val = 0; 7860e02fb3cdSMark Adams if (index_size == 0) { 78616497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 786272833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 78636497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 786472833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 786572833a62Smarkadams4 } 786672833a62Smarkadams4 } 7867e02fb3cdSMark Adams } else { // use (index,index) value if provided 78686497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78696497c311SBarry Smith PetscInt ii = index[iii]; 7870e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 78716497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 78726497c311SBarry Smith PetscInt jj = index[jjj]; 7873cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7874e02fb3cdSMark Adams } 7875e02fb3cdSMark Adams } 7876e02fb3cdSMark Adams } 787759ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 787872833a62Smarkadams4 AA[k / bs] = val; 787972833a62Smarkadams4 } 788072833a62Smarkadams4 grow = Istart / bs + brow / bs; 788166521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 788272833a62Smarkadams4 } 788372833a62Smarkadams4 // off-diag 788472833a62Smarkadams4 if (ismpiaij) { 788572833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 788672833a62Smarkadams4 const PetscScalar *vals; 788772833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 78886497c311SBarry Smith 788972833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 789072833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 789172833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 78926497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 789359ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 789472833a62Smarkadams4 AA[k / bs] = 0; 789572833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 789672833a62Smarkadams4 } 789772833a62Smarkadams4 nc = ncols / bs; 789872833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7899e02fb3cdSMark Adams if (index_size == 0) { 79006497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 790172833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79026497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79036497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 790459ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 790572833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 790672833a62Smarkadams4 } 790772833a62Smarkadams4 } 790872833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 790972833a62Smarkadams4 } 7910e02fb3cdSMark Adams } else { // use (index,index) value if provided 79116497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 79126497c311SBarry Smith PetscInt ii = index[iii]; 7913e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79146497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79156497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 79166497c311SBarry Smith PetscInt jj = index[jjj]; 7917e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7918e02fb3cdSMark Adams } 7919e02fb3cdSMark Adams } 7920e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7921e02fb3cdSMark Adams } 7922e02fb3cdSMark Adams } 792372833a62Smarkadams4 grow = Istart / bs + brow / bs; 792466521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 792572833a62Smarkadams4 } 792672833a62Smarkadams4 } 792772833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 792872833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79292cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 793072833a62Smarkadams4 } else { 793172833a62Smarkadams4 const PetscScalar *vals; 793272833a62Smarkadams4 const PetscInt *idx; 793372833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 793472833a62Smarkadams4 old_bs: 793572833a62Smarkadams4 /* 793672833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 793772833a62Smarkadams4 */ 793872833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 793972833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 794072833a62Smarkadams4 if (isseqaij) { 794172833a62Smarkadams4 PetscInt max_d_nnz; 79426497c311SBarry Smith 794372833a62Smarkadams4 /* 794472833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 794572833a62Smarkadams4 */ 794672833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 794772833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 794872833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 794948a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 795072833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 795172833a62Smarkadams4 } else if (ismpiaij) { 795272833a62Smarkadams4 Mat Daij, Oaij; 795372833a62Smarkadams4 const PetscInt *garray; 795472833a62Smarkadams4 PetscInt max_d_nnz; 79556497c311SBarry Smith 795672833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 795772833a62Smarkadams4 /* 795872833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 795972833a62Smarkadams4 */ 796072833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 796172833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 796272833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 796348a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 796472833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 796572833a62Smarkadams4 /* 796672833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 796772833a62Smarkadams4 */ 796872833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 796972833a62Smarkadams4 o_nnz[jj] = 0; 797072833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 797172833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 797272833a62Smarkadams4 o_nnz[jj] += ncols; 797372833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 797472833a62Smarkadams4 } 797572833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 797672833a62Smarkadams4 } 797772833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 797872833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 797972833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 798072833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 798172833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 798272833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 798372833a62Smarkadams4 PetscInt dest_row = Ii / bs; 79846497c311SBarry Smith 798572833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 798672833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 798772833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 798872833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 79896497c311SBarry Smith 799072833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 799172833a62Smarkadams4 } 799272833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 799372833a62Smarkadams4 } 799472833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 799572833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 799672833a62Smarkadams4 } 799772833a62Smarkadams4 } else { 79982d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79992d776b49SBarry Smith else { 80002d776b49SBarry Smith Gmat = Amat; 80012d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 80022d776b49SBarry Smith } 80039371c9d4SSatish Balay if (isseqaij) { 80049371c9d4SSatish Balay a = Gmat; 80059371c9d4SSatish Balay b = NULL; 80069371c9d4SSatish Balay } else { 800772833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 80089371c9d4SSatish Balay a = d->A; 80099371c9d4SSatish Balay b = d->B; 801072833a62Smarkadams4 } 80112d776b49SBarry Smith if (filter >= 0 || scale) { 80122d776b49SBarry Smith /* take absolute value of each entry */ 801372833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 801472833a62Smarkadams4 MatInfo info; 801572833a62Smarkadams4 PetscScalar *avals; 80166497c311SBarry Smith 801772833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 801872833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 801972833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 802072833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 802172833a62Smarkadams4 } 802272833a62Smarkadams4 } 80232d776b49SBarry Smith } 802472833a62Smarkadams4 if (symmetrize) { 8025b94d7dedSBarry Smith PetscBool isset, issym; 80266497c311SBarry Smith 8027b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8028b94d7dedSBarry Smith if (!isset || !issym) { 802972833a62Smarkadams4 Mat matTrans; 80306497c311SBarry Smith 803172833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80321fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 803372833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 803472833a62Smarkadams4 } 803572833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80362d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 803772833a62Smarkadams4 if (scale) { 803872833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 803972833a62Smarkadams4 Vec diag; 80406497c311SBarry Smith 804172833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 804272833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 804372833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 804472833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 804572833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 804672833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 804772833a62Smarkadams4 } 804872833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80492d776b49SBarry Smith if (filter >= 0) { 80502ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80512ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80522d776b49SBarry Smith } 805372833a62Smarkadams4 *a_Gmat = Gmat; 80543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 805572833a62Smarkadams4 } 805672833a62Smarkadams4 805772833a62Smarkadams4 /* 805898921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 805998921bdaSJacob Faibussowitsch */ 806098921bdaSJacob Faibussowitsch 806198921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80629566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80639566063dSJacob Faibussowitsch #undef PetscCall 80649371c9d4SSatish Balay #define PetscCall(...) \ 80659371c9d4SSatish Balay do { \ 80665f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 806798921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 806898921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 806998921bdaSJacob Faibussowitsch return; \ 807098921bdaSJacob Faibussowitsch } \ 807198921bdaSJacob Faibussowitsch } while (0) 807298921bdaSJacob Faibussowitsch 807398921bdaSJacob Faibussowitsch #undef SETERRQ 80749371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80759371c9d4SSatish Balay do { \ 807698921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 807798921bdaSJacob Faibussowitsch return; \ 807898921bdaSJacob Faibussowitsch } while (0) 807998921bdaSJacob Faibussowitsch 808098921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 808198921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 808298921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 808398921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 808498921bdaSJacob Faibussowitsch #else 808598921bdaSJacob Faibussowitsch #endif 8086d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8087d71ae5a4SJacob Faibussowitsch { 808898921bdaSJacob Faibussowitsch Mat mat = *mmat; 808998921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 809098921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 809198921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 809298921bdaSJacob Faibussowitsch PetscScalar value; 809398921bdaSJacob Faibussowitsch 809498921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 809598921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80965f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 809798921bdaSJacob Faibussowitsch { 809898921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 809998921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 810098921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 810198921bdaSJacob Faibussowitsch 810298921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 810398921bdaSJacob Faibussowitsch Mat A = aij->A; 810498921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 810598921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 810698921bdaSJacob Faibussowitsch MatScalar *aa; 8107f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 810898921bdaSJacob Faibussowitsch Mat B = aij->B; 810998921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 811098921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 811198921bdaSJacob Faibussowitsch MatScalar *ba; 811298921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 811398921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 811498921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 811598921bdaSJacob Faibussowitsch 811698921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 811798921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 811898921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 811998921bdaSJacob Faibussowitsch 812098921bdaSJacob Faibussowitsch PetscFunctionBegin; 81219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 812398921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 812498921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81256bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 812698921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 812798921bdaSJacob Faibussowitsch row = im[i] - rstart; 812898921bdaSJacob Faibussowitsch lastcol1 = -1; 812998921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 813098921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 813198921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 813298921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 813398921bdaSJacob Faibussowitsch low1 = 0; 813498921bdaSJacob Faibussowitsch high1 = nrow1; 813598921bdaSJacob Faibussowitsch lastcol2 = -1; 813698921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 813798921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 813898921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 813998921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 814098921bdaSJacob Faibussowitsch low2 = 0; 814198921bdaSJacob Faibussowitsch high2 = nrow2; 814298921bdaSJacob Faibussowitsch 814398921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 814498921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 814598921bdaSJacob Faibussowitsch else value = v[i + j * m]; 814698921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 814798921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 814898921bdaSJacob Faibussowitsch col = in[j] - cstart; 814998921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 815098921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 815198921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 815263a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 815398921bdaSJacob Faibussowitsch } else { 815498921bdaSJacob Faibussowitsch if (mat->was_assembled) { 815548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 815698921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8157eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 815898921bdaSJacob Faibussowitsch col--; 815998921bdaSJacob Faibussowitsch #else 816098921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 816198921bdaSJacob Faibussowitsch #endif 8162f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 81639566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 816498921bdaSJacob Faibussowitsch col = in[j]; 816598921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 816698921bdaSJacob Faibussowitsch B = aij->B; 816798921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81689371c9d4SSatish Balay bimax = b->imax; 81699371c9d4SSatish Balay bi = b->i; 81709371c9d4SSatish Balay bilen = b->ilen; 81719371c9d4SSatish Balay bj = b->j; 817298921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 817398921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 817498921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 817598921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 817698921bdaSJacob Faibussowitsch low2 = 0; 817798921bdaSJacob Faibussowitsch high2 = nrow2; 817898921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 817998921bdaSJacob Faibussowitsch ba = b->a; 818098921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 818198921bdaSJacob Faibussowitsch } 818298921bdaSJacob Faibussowitsch } else col = in[j]; 818398921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 818498921bdaSJacob Faibussowitsch } 818598921bdaSJacob Faibussowitsch } 818698921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 818798921bdaSJacob Faibussowitsch if (roworiented) { 81889566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 818998921bdaSJacob Faibussowitsch } else { 81909566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 819198921bdaSJacob Faibussowitsch } 819298921bdaSJacob Faibussowitsch } 819398921bdaSJacob Faibussowitsch } 81949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 819698921bdaSJacob Faibussowitsch } 819798921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 819898921bdaSJacob Faibussowitsch } 819972833a62Smarkadams4 820098921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 820198921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 820298921bdaSJacob Faibussowitsch * original definitions */ 82039566063dSJacob Faibussowitsch #undef PetscCall 820498921bdaSJacob Faibussowitsch #undef SETERRQ 8205