xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 21b0d8fbbf4d33232197105d833f54513101ab68)
1cb512458SBarry Smith #ifndef lint
2*21b0d8fbSLois Curfman McInnes static char vcid[] = "$Id: mpiaij.c,v 1.68 1995/08/18 14:06:05 curfman Exp curfman $";
3cb512458SBarry Smith #endif
48a729477SBarry Smith 
51eb62cbbSBarry Smith #include "mpiaij.h"
68a729477SBarry Smith #include "vec/vecimpl.h"
7d6dfbf8fSBarry Smith #include "inline/spops.h"
88a729477SBarry Smith 
99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column
109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
119e25ed09SBarry Smith storage of the matrix.  This is done in a non scable way since the
129e25ed09SBarry Smith length of colmap equals the global matrix length.
139e25ed09SBarry Smith */
14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat)
159e25ed09SBarry Smith {
1644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
1744a69424SLois Curfman McInnes   Mat_AIJ    *B = (Mat_AIJ*) aij->B->data;
189e25ed09SBarry Smith   int        n = B->n,i;
1978b31e54SBarry Smith   aij->colmap = (int *) PETSCMALLOC(aij->N*sizeof(int));CHKPTRQ(aij->colmap);
20464493b3SBarry Smith   PLogObjectMemory(mat,aij->N*sizeof(int));
2178b31e54SBarry Smith   PETSCMEMSET(aij->colmap,0,aij->N*sizeof(int));
22abc0e9e4SLois Curfman McInnes   for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i+1;
239e25ed09SBarry Smith   return 0;
249e25ed09SBarry Smith }
259e25ed09SBarry Smith 
262493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat);
272493cbb0SBarry Smith 
2851c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm)
29299609e3SLois Curfman McInnes {
30299609e3SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
31299609e3SLois Curfman McInnes   int ierr;
32299609e3SLois Curfman McInnes   if (aij->numtids == 1) {
3351c98ccdSLois Curfman McInnes     ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr);
34299609e3SLois Curfman McInnes   } else
35bbb6d6a8SBarry Smith     SETERRQ(1,"MatGetReordering_MPIAIJ:  not yet supported in parallel");
36299609e3SLois Curfman McInnes   return 0;
37299609e3SLois Curfman McInnes }
38299609e3SLois Curfman McInnes 
392ee70a88SLois Curfman McInnes static int MatSetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,
401eb62cbbSBarry Smith                             int *idxn,Scalar *v,InsertMode addv)
418a729477SBarry Smith {
4244a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
431eb62cbbSBarry Smith   int        ierr,i,j, rstart = aij->rstart, rend = aij->rend;
441eb62cbbSBarry Smith   int        cstart = aij->cstart, cend = aij->cend,row,col;
458a729477SBarry Smith 
4607a0e7adSLois Curfman McInnes   if (aij->insertmode != NOTSETVALUES && aij->insertmode != addv) {
47bbb6d6a8SBarry Smith     SETERRQ(1,"MatSetValues_MPIAIJ:You cannot mix inserts and adds");
488a729477SBarry Smith   }
491eb62cbbSBarry Smith   aij->insertmode = addv;
508a729477SBarry Smith   for ( i=0; i<m; i++ ) {
51bbb6d6a8SBarry Smith     if (idxm[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row");
52bbb6d6a8SBarry Smith     if (idxm[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large");
531eb62cbbSBarry Smith     if (idxm[i] >= rstart && idxm[i] < rend) {
541eb62cbbSBarry Smith       row = idxm[i] - rstart;
551eb62cbbSBarry Smith       for ( j=0; j<n; j++ ) {
56bbb6d6a8SBarry Smith         if (idxn[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column");
57bbb6d6a8SBarry Smith         if (idxn[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large");
581eb62cbbSBarry Smith         if (idxn[j] >= cstart && idxn[j] < cend){
591eb62cbbSBarry Smith           col = idxn[j] - cstart;
6078b31e54SBarry Smith           ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr);
611eb62cbbSBarry Smith         }
621eb62cbbSBarry Smith         else {
63d6dfbf8fSBarry Smith           if (aij->assembled) {
64b7c46309SBarry Smith             if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);}
659e25ed09SBarry Smith             col = aij->colmap[idxn[j]] - 1;
66b7c46309SBarry Smith             if (col < 0 && !((Mat_AIJ*)(aij->A->data))->nonew) {
672493cbb0SBarry Smith               ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
682493cbb0SBarry Smith               col =  idxn[j];
69d6dfbf8fSBarry Smith             }
709e25ed09SBarry Smith           }
719e25ed09SBarry Smith           else col = idxn[j];
7278b31e54SBarry Smith           ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERRQ(ierr);
731eb62cbbSBarry Smith         }
741eb62cbbSBarry Smith       }
751eb62cbbSBarry Smith     }
761eb62cbbSBarry Smith     else {
77dbd7a890SLois Curfman McInnes       ierr = StashValues_Private(&aij->stash,idxm[i],n,idxn,v+i*n,addv);
7878b31e54SBarry Smith       CHKERRQ(ierr);
791eb62cbbSBarry Smith     }
808a729477SBarry Smith   }
818a729477SBarry Smith   return 0;
828a729477SBarry Smith }
838a729477SBarry Smith 
848a729477SBarry Smith /*
851eb62cbbSBarry Smith     the assembly code is a lot like the code for vectors, we should
861eb62cbbSBarry Smith     sometime derive a single assembly code that can be used for
871eb62cbbSBarry Smith     either case.
888a729477SBarry Smith */
898a729477SBarry Smith 
90fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode)
918a729477SBarry Smith {
9244a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
93d6dfbf8fSBarry Smith   MPI_Comm    comm = mat->comm;
946abc6512SBarry Smith   int         numtids = aij->numtids, *owners = aij->rowners;
951eb62cbbSBarry Smith   int         mytid = aij->mytid;
961eb62cbbSBarry Smith   MPI_Request *send_waits,*recv_waits;
976abc6512SBarry Smith   int         *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
985392566eSBarry Smith   int         tag = mat->tag, *owner,*starts,count,ierr;
991eb62cbbSBarry Smith   InsertMode  addv;
1001eb62cbbSBarry Smith   Scalar      *rvalues,*svalues;
1011eb62cbbSBarry Smith 
1021eb62cbbSBarry Smith   /* make sure all processors are either in INSERTMODE or ADDMODE */
10328988994SBarry Smith   MPI_Allreduce((void *) &aij->insertmode,(void *) &addv,1,MPI_INT,
1041eb62cbbSBarry Smith                 MPI_BOR,comm);
1059d00d63dSBarry Smith   if (addv == (ADDVALUES|INSERTVALUES)) {
106bbb6d6a8SBarry Smith     SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added");
1071eb62cbbSBarry Smith   }
1081eb62cbbSBarry Smith   aij->insertmode = addv; /* in case this processor had no cache */
1091eb62cbbSBarry Smith 
1101eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
11178b31e54SBarry Smith   nprocs = (int *) PETSCMALLOC( 2*numtids*sizeof(int) ); CHKPTRQ(nprocs);
11278b31e54SBarry Smith   PETSCMEMSET(nprocs,0,2*numtids*sizeof(int)); procs = nprocs + numtids;
11378b31e54SBarry Smith   owner = (int *) PETSCMALLOC( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
1141eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
1151eb62cbbSBarry Smith     idx = aij->stash.idx[i];
1161eb62cbbSBarry Smith     for ( j=0; j<numtids; j++ ) {
1171eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
1181eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
1198a729477SBarry Smith       }
1208a729477SBarry Smith     }
1218a729477SBarry Smith   }
1221eb62cbbSBarry Smith   nsends = 0;  for ( i=0; i<numtids; i++ ) { nsends += procs[i];}
1231eb62cbbSBarry Smith 
1241eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
12578b31e54SBarry Smith   work = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(work);
1261eb62cbbSBarry Smith   MPI_Allreduce((void *) procs,(void *) work,numtids,MPI_INT,MPI_SUM,comm);
1271eb62cbbSBarry Smith   nreceives = work[mytid];
1281eb62cbbSBarry Smith   MPI_Allreduce((void *) nprocs,(void *) work,numtids,MPI_INT,MPI_MAX,comm);
1291eb62cbbSBarry Smith   nmax = work[mytid];
13078b31e54SBarry Smith   PETSCFREE(work);
1311eb62cbbSBarry Smith 
1321eb62cbbSBarry Smith   /* post receives:
1331eb62cbbSBarry Smith        1) each message will consist of ordered pairs
1341eb62cbbSBarry Smith      (global index,value) we store the global index as a double
135d6dfbf8fSBarry Smith      to simplify the message passing.
1361eb62cbbSBarry Smith        2) since we don't know how long each individual message is we
1371eb62cbbSBarry Smith      allocate the largest needed buffer for each receive. Potentially
1381eb62cbbSBarry Smith      this is a lot of wasted space.
1391eb62cbbSBarry Smith 
1401eb62cbbSBarry Smith 
1411eb62cbbSBarry Smith        This could be done better.
1421eb62cbbSBarry Smith   */
14378b31e54SBarry Smith   rvalues = (Scalar *) PETSCMALLOC(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));
14478b31e54SBarry Smith   CHKPTRQ(rvalues);
14578b31e54SBarry Smith   recv_waits = (MPI_Request *) PETSCMALLOC((nreceives+1)*sizeof(MPI_Request));
14678b31e54SBarry Smith   CHKPTRQ(recv_waits);
1471eb62cbbSBarry Smith   for ( i=0; i<nreceives; i++ ) {
148c60448a5SBarry Smith     MPI_Irecv((void *)(rvalues+3*nmax*i),3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,
1491eb62cbbSBarry Smith               comm,recv_waits+i);
1501eb62cbbSBarry Smith   }
1511eb62cbbSBarry Smith 
1521eb62cbbSBarry Smith   /* do sends:
1531eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
1541eb62cbbSBarry Smith          the ith processor
1551eb62cbbSBarry Smith   */
15678b31e54SBarry Smith   svalues = (Scalar *) PETSCMALLOC( 3*(aij->stash.n+1)*sizeof(Scalar) );
15778b31e54SBarry Smith   CHKPTRQ(svalues);
15878b31e54SBarry Smith   send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request));
15978b31e54SBarry Smith   CHKPTRQ(send_waits);
16078b31e54SBarry Smith   starts = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(starts);
1611eb62cbbSBarry Smith   starts[0] = 0;
1621eb62cbbSBarry Smith   for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
1631eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
1641eb62cbbSBarry Smith     svalues[3*starts[owner[i]]]       = (Scalar)  aij->stash.idx[i];
1651eb62cbbSBarry Smith     svalues[3*starts[owner[i]]+1]     = (Scalar)  aij->stash.idy[i];
1661eb62cbbSBarry Smith     svalues[3*(starts[owner[i]]++)+2] =  aij->stash.array[i];
1671eb62cbbSBarry Smith   }
16878b31e54SBarry Smith   PETSCFREE(owner);
1691eb62cbbSBarry Smith   starts[0] = 0;
1701eb62cbbSBarry Smith   for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
1711eb62cbbSBarry Smith   count = 0;
1721eb62cbbSBarry Smith   for ( i=0; i<numtids; i++ ) {
1731eb62cbbSBarry Smith     if (procs[i]) {
174c60448a5SBarry Smith       MPI_Isend((void*)(svalues+3*starts[i]),3*nprocs[i],MPIU_SCALAR,i,tag,
1751eb62cbbSBarry Smith                 comm,send_waits+count++);
1761eb62cbbSBarry Smith     }
1771eb62cbbSBarry Smith   }
17878b31e54SBarry Smith   PETSCFREE(starts); PETSCFREE(nprocs);
1791eb62cbbSBarry Smith 
1801eb62cbbSBarry Smith   /* Free cache space */
18178b31e54SBarry Smith   ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr);
1821eb62cbbSBarry Smith 
1831eb62cbbSBarry Smith   aij->svalues    = svalues;    aij->rvalues = rvalues;
1841eb62cbbSBarry Smith   aij->nsends     = nsends;     aij->nrecvs = nreceives;
1851eb62cbbSBarry Smith   aij->send_waits = send_waits; aij->recv_waits = recv_waits;
1861eb62cbbSBarry Smith   aij->rmax       = nmax;
1871eb62cbbSBarry Smith 
1881eb62cbbSBarry Smith   return 0;
1891eb62cbbSBarry Smith }
19044a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat);
1911eb62cbbSBarry Smith 
192fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode)
1931eb62cbbSBarry Smith {
1941eb62cbbSBarry Smith   int        ierr;
19544a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
1961eb62cbbSBarry Smith   MPI_Status  *send_status,recv_status;
1976abc6512SBarry Smith   int         imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n;
1982493cbb0SBarry Smith   int         row,col,other_disassembled;
1991eb62cbbSBarry Smith   Scalar      *values,val;
2001eb62cbbSBarry Smith   InsertMode  addv = aij->insertmode;
2011eb62cbbSBarry Smith 
2021eb62cbbSBarry Smith   /*  wait on receives */
2031eb62cbbSBarry Smith   while (count) {
204d6dfbf8fSBarry Smith     MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status);
2051eb62cbbSBarry Smith     /* unpack receives into our local space */
206d6dfbf8fSBarry Smith     values = aij->rvalues + 3*imdex*aij->rmax;
207c60448a5SBarry Smith     MPI_Get_count(&recv_status,MPIU_SCALAR,&n);
2081eb62cbbSBarry Smith     n = n/3;
2091eb62cbbSBarry Smith     for ( i=0; i<n; i++ ) {
2101eb62cbbSBarry Smith       row = (int) PETSCREAL(values[3*i]) - aij->rstart;
2111eb62cbbSBarry Smith       col = (int) PETSCREAL(values[3*i+1]);
2121eb62cbbSBarry Smith       val = values[3*i+2];
2131eb62cbbSBarry Smith       if (col >= aij->cstart && col < aij->cend) {
2141eb62cbbSBarry Smith           col -= aij->cstart;
2151eb62cbbSBarry Smith         MatSetValues(aij->A,1,&row,1,&col,&val,addv);
2161eb62cbbSBarry Smith       }
2171eb62cbbSBarry Smith       else {
218d6dfbf8fSBarry Smith         if (aij->assembled) {
219b7c46309SBarry Smith           if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);}
2209e25ed09SBarry Smith           col = aij->colmap[col] - 1;
221b7c46309SBarry Smith           if (col < 0  && !((Mat_AIJ*)(aij->A->data))->nonew) {
2222493cbb0SBarry Smith             ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
2232493cbb0SBarry Smith             col = (int) PETSCREAL(values[3*i+1]);
224d6dfbf8fSBarry Smith           }
2259e25ed09SBarry Smith         }
2261eb62cbbSBarry Smith         MatSetValues(aij->B,1,&row,1,&col,&val,addv);
2271eb62cbbSBarry Smith       }
2281eb62cbbSBarry Smith     }
2291eb62cbbSBarry Smith     count--;
2301eb62cbbSBarry Smith   }
23178b31e54SBarry Smith   PETSCFREE(aij->recv_waits); PETSCFREE(aij->rvalues);
2321eb62cbbSBarry Smith 
2331eb62cbbSBarry Smith   /* wait on sends */
2341eb62cbbSBarry Smith   if (aij->nsends) {
23578b31e54SBarry Smith     send_status = (MPI_Status *) PETSCMALLOC( aij->nsends*sizeof(MPI_Status) );
23678b31e54SBarry Smith     CHKPTRQ(send_status);
2371eb62cbbSBarry Smith     MPI_Waitall(aij->nsends,aij->send_waits,send_status);
23878b31e54SBarry Smith     PETSCFREE(send_status);
2391eb62cbbSBarry Smith   }
24078b31e54SBarry Smith   PETSCFREE(aij->send_waits); PETSCFREE(aij->svalues);
2411eb62cbbSBarry Smith 
24207a0e7adSLois Curfman McInnes   aij->insertmode = NOTSETVALUES;
24378b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr);
24478b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr);
2451eb62cbbSBarry Smith 
2462493cbb0SBarry Smith   /* determine if any processor has disassembled, if so we must
2472493cbb0SBarry Smith      also disassemble ourselfs, in order that we may reassemble. */
2482493cbb0SBarry Smith   MPI_Allreduce((void *) &aij->assembled,(void *) &other_disassembled,1,
2492493cbb0SBarry Smith                  MPI_INT,MPI_PROD,mat->comm);
2502493cbb0SBarry Smith   if (aij->assembled && !other_disassembled) {
2512493cbb0SBarry Smith     ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
2522493cbb0SBarry Smith   }
2532493cbb0SBarry Smith 
2545e42470aSBarry Smith   if (!aij->assembled && mode == FINAL_ASSEMBLY) {
25578b31e54SBarry Smith     ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr);
256d6dfbf8fSBarry Smith     aij->assembled = 1;
2575e42470aSBarry Smith   }
25878b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr);
25978b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr);
2605e42470aSBarry Smith 
2618a729477SBarry Smith   return 0;
2628a729477SBarry Smith }
2638a729477SBarry Smith 
2642ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A)
2651eb62cbbSBarry Smith {
26644a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data;
267dbd7a890SLois Curfman McInnes   int ierr;
26878b31e54SBarry Smith   ierr = MatZeroEntries(l->A); CHKERRQ(ierr);
26978b31e54SBarry Smith   ierr = MatZeroEntries(l->B); CHKERRQ(ierr);
2701eb62cbbSBarry Smith   return 0;
2711eb62cbbSBarry Smith }
2721eb62cbbSBarry Smith 
2731eb62cbbSBarry Smith /* again this uses the same basic stratagy as in the assembly and
2741eb62cbbSBarry Smith    scatter create routines, we should try to do it systemamatically
2751eb62cbbSBarry Smith    if we can figure out the proper level of generality. */
2761eb62cbbSBarry Smith 
2771eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the
2781eb62cbbSBarry Smith    matrix is square and the column and row owerships are identical.
2791eb62cbbSBarry Smith    This is a BUG. The only way to fix it seems to be to access
2801eb62cbbSBarry Smith    aij->A and aij->B directly and not through the MatZeroRows()
2811eb62cbbSBarry Smith    routine.
2821eb62cbbSBarry Smith */
28344a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag)
2841eb62cbbSBarry Smith {
28544a69424SLois Curfman McInnes   Mat_MPIAIJ     *l = (Mat_MPIAIJ *) A->data;
2861eb62cbbSBarry Smith   int            i,ierr,N, *rows,*owners = l->rowners,numtids = l->numtids;
2876abc6512SBarry Smith   int            *procs,*nprocs,j,found,idx,nsends,*work;
2881eb62cbbSBarry Smith   int            nmax,*svalues,*starts,*owner,nrecvs,mytid = l->mytid;
2895392566eSBarry Smith   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
290d6dfbf8fSBarry Smith   int            *lens,imdex,*lrows,*values;
291d6dfbf8fSBarry Smith   MPI_Comm       comm = A->comm;
2921eb62cbbSBarry Smith   MPI_Request    *send_waits,*recv_waits;
2931eb62cbbSBarry Smith   MPI_Status     recv_status,*send_status;
2941eb62cbbSBarry Smith   IS             istmp;
2951eb62cbbSBarry Smith 
296c8f67822SLois Curfman McInnes   if (!l->assembled)
29778b31e54SBarry Smith     SETERRQ(1,"MatZeroRows_MPIAIJ:Must assemble matrix first");
29878b31e54SBarry Smith   ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr);
29978b31e54SBarry Smith   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
3001eb62cbbSBarry Smith 
3011eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
30278b31e54SBarry Smith   nprocs = (int *) PETSCMALLOC( 2*numtids*sizeof(int) ); CHKPTRQ(nprocs);
30378b31e54SBarry Smith   PETSCMEMSET(nprocs,0,2*numtids*sizeof(int)); procs = nprocs + numtids;
30478b31e54SBarry Smith   owner = (int *) PETSCMALLOC((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
3051eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
3061eb62cbbSBarry Smith     idx = rows[i];
3071eb62cbbSBarry Smith     found = 0;
3081eb62cbbSBarry Smith     for ( j=0; j<numtids; j++ ) {
3091eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
3101eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
3111eb62cbbSBarry Smith       }
3121eb62cbbSBarry Smith     }
313bbb6d6a8SBarry Smith     if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range");
3141eb62cbbSBarry Smith   }
3151eb62cbbSBarry Smith   nsends = 0;  for ( i=0; i<numtids; i++ ) { nsends += procs[i];}
3161eb62cbbSBarry Smith 
3171eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
31878b31e54SBarry Smith   work = (int *) PETSCMALLOC( numtids*sizeof(int) ); CHKPTRQ(work);
3191eb62cbbSBarry Smith   MPI_Allreduce((void *) procs,(void *) work,numtids,MPI_INT,MPI_SUM,comm);
3201eb62cbbSBarry Smith   nrecvs = work[mytid];
3211eb62cbbSBarry Smith   MPI_Allreduce((void *) nprocs,(void *) work,numtids,MPI_INT,MPI_MAX,comm);
3221eb62cbbSBarry Smith   nmax = work[mytid];
32378b31e54SBarry Smith   PETSCFREE(work);
3241eb62cbbSBarry Smith 
3251eb62cbbSBarry Smith   /* post receives:   */
32678b31e54SBarry Smith   rvalues = (int *) PETSCMALLOC((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */
32778b31e54SBarry Smith   CHKPTRQ(rvalues);
32878b31e54SBarry Smith   recv_waits = (MPI_Request *) PETSCMALLOC((nrecvs+1)*sizeof(MPI_Request));
32978b31e54SBarry Smith   CHKPTRQ(recv_waits);
3301eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
3311eb62cbbSBarry Smith     MPI_Irecv((void *)(rvalues+nmax*i),nmax,MPI_INT,MPI_ANY_SOURCE,tag,
3321eb62cbbSBarry Smith               comm,recv_waits+i);
3331eb62cbbSBarry Smith   }
3341eb62cbbSBarry Smith 
3351eb62cbbSBarry Smith   /* do sends:
3361eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
3371eb62cbbSBarry Smith          the ith processor
3381eb62cbbSBarry Smith   */
33978b31e54SBarry Smith   svalues = (int *) PETSCMALLOC( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
34078b31e54SBarry Smith   send_waits = (MPI_Request *) PETSCMALLOC( (nsends+1)*sizeof(MPI_Request));
34178b31e54SBarry Smith   CHKPTRQ(send_waits);
34278b31e54SBarry Smith   starts = (int *) PETSCMALLOC( (numtids+1)*sizeof(int) ); CHKPTRQ(starts);
3431eb62cbbSBarry Smith   starts[0] = 0;
3441eb62cbbSBarry Smith   for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3451eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
3461eb62cbbSBarry Smith     svalues[starts[owner[i]]++] = rows[i];
3471eb62cbbSBarry Smith   }
3481eb62cbbSBarry Smith   ISRestoreIndices(is,&rows);
3491eb62cbbSBarry Smith 
3501eb62cbbSBarry Smith   starts[0] = 0;
3511eb62cbbSBarry Smith   for ( i=1; i<numtids+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3521eb62cbbSBarry Smith   count = 0;
3531eb62cbbSBarry Smith   for ( i=0; i<numtids; i++ ) {
3541eb62cbbSBarry Smith     if (procs[i]) {
3551eb62cbbSBarry Smith       MPI_Isend((void*)(svalues+starts[i]),nprocs[i],MPI_INT,i,tag,
3561eb62cbbSBarry Smith                 comm,send_waits+count++);
3571eb62cbbSBarry Smith     }
3581eb62cbbSBarry Smith   }
35978b31e54SBarry Smith   PETSCFREE(starts);
3601eb62cbbSBarry Smith 
3611eb62cbbSBarry Smith   base = owners[mytid];
3621eb62cbbSBarry Smith 
3631eb62cbbSBarry Smith   /*  wait on receives */
36478b31e54SBarry Smith   lens = (int *) PETSCMALLOC( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
3651eb62cbbSBarry Smith   source = lens + nrecvs;
3661eb62cbbSBarry Smith   count = nrecvs; slen = 0;
3671eb62cbbSBarry Smith   while (count) {
368d6dfbf8fSBarry Smith     MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);
3691eb62cbbSBarry Smith     /* unpack receives into our local space */
3701eb62cbbSBarry Smith     MPI_Get_count(&recv_status,MPI_INT,&n);
371d6dfbf8fSBarry Smith     source[imdex]  = recv_status.MPI_SOURCE;
372d6dfbf8fSBarry Smith     lens[imdex]  = n;
3731eb62cbbSBarry Smith     slen += n;
3741eb62cbbSBarry Smith     count--;
3751eb62cbbSBarry Smith   }
37678b31e54SBarry Smith   PETSCFREE(recv_waits);
3771eb62cbbSBarry Smith 
3781eb62cbbSBarry Smith   /* move the data into the send scatter */
37978b31e54SBarry Smith   lrows = (int *) PETSCMALLOC( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
3801eb62cbbSBarry Smith   count = 0;
3811eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
3821eb62cbbSBarry Smith     values = rvalues + i*nmax;
3831eb62cbbSBarry Smith     for ( j=0; j<lens[i]; j++ ) {
3841eb62cbbSBarry Smith       lrows[count++] = values[j] - base;
3851eb62cbbSBarry Smith     }
3861eb62cbbSBarry Smith   }
38778b31e54SBarry Smith   PETSCFREE(rvalues); PETSCFREE(lens);
38878b31e54SBarry Smith   PETSCFREE(owner); PETSCFREE(nprocs);
3891eb62cbbSBarry Smith 
3901eb62cbbSBarry Smith   /* actually zap the local rows */
3916b5873e3SBarry Smith   ierr = ISCreateSequential(MPI_COMM_SELF,slen,lrows,&istmp);
392464493b3SBarry Smith   PLogObjectParent(A,istmp);
39378b31e54SBarry Smith   CHKERRQ(ierr);  PETSCFREE(lrows);
39478b31e54SBarry Smith   ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr);
39578b31e54SBarry Smith   ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr);
39678b31e54SBarry Smith   ierr = ISDestroy(istmp); CHKERRQ(ierr);
3971eb62cbbSBarry Smith 
3981eb62cbbSBarry Smith   /* wait on sends */
3991eb62cbbSBarry Smith   if (nsends) {
40078b31e54SBarry Smith     send_status = (MPI_Status *) PETSCMALLOC( nsends*sizeof(MPI_Status) );
40178b31e54SBarry Smith     CHKPTRQ(send_status);
4021eb62cbbSBarry Smith     MPI_Waitall(nsends,send_waits,send_status);
40378b31e54SBarry Smith     PETSCFREE(send_status);
4041eb62cbbSBarry Smith   }
40578b31e54SBarry Smith   PETSCFREE(send_waits); PETSCFREE(svalues);
4061eb62cbbSBarry Smith 
4071eb62cbbSBarry Smith 
4081eb62cbbSBarry Smith   return 0;
4091eb62cbbSBarry Smith }
4101eb62cbbSBarry Smith 
41144a69424SLois Curfman McInnes static int MatMult_MPIAIJ(Mat aijin,Vec xx,Vec yy)
4121eb62cbbSBarry Smith {
41344a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data;
4141eb62cbbSBarry Smith   int        ierr;
41578b31e54SBarry Smith   if (!aij->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix first");
41606be10caSBarry Smith   ierr = VecScatterBegin(xx,aij->lvec,INSERTVALUES,SCATTERALL,aij->Mvctx);
41778b31e54SBarry Smith   CHKERRQ(ierr);
41878b31e54SBarry Smith   ierr = MatMult(aij->A,xx,yy); CHKERRQ(ierr);
41906be10caSBarry Smith   ierr = VecScatterEnd(xx,aij->lvec,INSERTVALUES,SCATTERALL,aij->Mvctx);
42078b31e54SBarry Smith   CHKERRQ(ierr);
42178b31e54SBarry Smith   ierr = MatMultAdd(aij->B,aij->lvec,yy,yy); CHKERRQ(ierr);
4221eb62cbbSBarry Smith   return 0;
4231eb62cbbSBarry Smith }
4241eb62cbbSBarry Smith 
42544a69424SLois Curfman McInnes static int MatMultAdd_MPIAIJ(Mat aijin,Vec xx,Vec yy,Vec zz)
426da3a660dSBarry Smith {
42744a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data;
428da3a660dSBarry Smith   int        ierr;
42978b31e54SBarry Smith   if (!aij->assembled) SETERRQ(1,"MatMult_MPIAIJ:must assemble matrix first");
43006be10caSBarry Smith   ierr = VecScatterBegin(xx,aij->lvec,INSERTVALUES,SCATTERALL,aij->Mvctx);
43178b31e54SBarry Smith   CHKERRQ(ierr);
43278b31e54SBarry Smith   ierr = MatMultAdd(aij->A,xx,yy,zz); CHKERRQ(ierr);
43306be10caSBarry Smith   ierr = VecScatterEnd(xx,aij->lvec,INSERTVALUES,SCATTERALL,aij->Mvctx);
43478b31e54SBarry Smith   CHKERRQ(ierr);
43578b31e54SBarry Smith   ierr = MatMultAdd(aij->B,aij->lvec,zz,zz); CHKERRQ(ierr);
436da3a660dSBarry Smith   return 0;
437da3a660dSBarry Smith }
438da3a660dSBarry Smith 
43944a69424SLois Curfman McInnes static int MatMultTrans_MPIAIJ(Mat aijin,Vec xx,Vec yy)
440da3a660dSBarry Smith {
44144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data;
442da3a660dSBarry Smith   int        ierr;
443da3a660dSBarry Smith 
44444a69424SLois Curfman McInnes   if (!aij->assembled)
44578b31e54SBarry Smith     SETERRQ(1,"MatMulTrans_MPIAIJ:must assemble matrix first");
446da3a660dSBarry Smith   /* do nondiagonal part */
44778b31e54SBarry Smith   ierr = MatMultTrans(aij->B,xx,aij->lvec); CHKERRQ(ierr);
448da3a660dSBarry Smith   /* send it on its way */
44906be10caSBarry Smith   ierr = VecScatterBegin(aij->lvec,yy,ADDVALUES,
45078b31e54SBarry Smith            (ScatterMode)(SCATTERALL|SCATTERREVERSE),aij->Mvctx); CHKERRQ(ierr);
451da3a660dSBarry Smith   /* do local part */
45278b31e54SBarry Smith   ierr = MatMultTrans(aij->A,xx,yy); CHKERRQ(ierr);
453da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
454da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
455da3a660dSBarry Smith   /* but is not perhaps always true. */
45606be10caSBarry Smith   ierr = VecScatterEnd(aij->lvec,yy,ADDVALUES,
45778b31e54SBarry Smith          (ScatterMode)(SCATTERALL|SCATTERREVERSE),aij->Mvctx); CHKERRQ(ierr);
458da3a660dSBarry Smith   return 0;
459da3a660dSBarry Smith }
460da3a660dSBarry Smith 
46144a69424SLois Curfman McInnes static int MatMultTransAdd_MPIAIJ(Mat aijin,Vec xx,Vec yy,Vec zz)
462da3a660dSBarry Smith {
46344a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data;
464da3a660dSBarry Smith   int        ierr;
465da3a660dSBarry Smith 
46644a69424SLois Curfman McInnes   if (!aij->assembled)
46778b31e54SBarry Smith     SETERRQ(1,"MatMulTransAdd_MPIAIJ:must assemble matrix first");
468da3a660dSBarry Smith   /* do nondiagonal part */
46978b31e54SBarry Smith   ierr = MatMultTrans(aij->B,xx,aij->lvec); CHKERRQ(ierr);
470da3a660dSBarry Smith   /* send it on its way */
47106be10caSBarry Smith   ierr = VecScatterBegin(aij->lvec,zz,ADDVALUES,
47278b31e54SBarry Smith          (ScatterMode)(SCATTERALL|SCATTERREVERSE),aij->Mvctx); CHKERRQ(ierr);
473da3a660dSBarry Smith   /* do local part */
47478b31e54SBarry Smith   ierr = MatMultTransAdd(aij->A,xx,yy,zz); CHKERRQ(ierr);
475da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
476da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
477da3a660dSBarry Smith   /* but is not perhaps always true. */
47806be10caSBarry Smith   ierr = VecScatterEnd(aij->lvec,zz,ADDVALUES,
47978b31e54SBarry Smith        (ScatterMode)(SCATTERALL|SCATTERREVERSE),aij->Mvctx); CHKERRQ(ierr);
480da3a660dSBarry Smith   return 0;
481da3a660dSBarry Smith }
482da3a660dSBarry Smith 
4831eb62cbbSBarry Smith /*
4841eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
4851eb62cbbSBarry Smith    diagonal block
4861eb62cbbSBarry Smith */
487d1710a03SLois Curfman McInnes static int MatGetDiagonal_MPIAIJ(Mat Ain,Vec v)
4881eb62cbbSBarry Smith {
48944a69424SLois Curfman McInnes   Mat_MPIAIJ *A = (Mat_MPIAIJ *) Ain->data;
49078b31e54SBarry Smith   if (!A->assembled) SETERRQ(1,"MatGetDiag_MPIAIJ:must assemble matrix first");
4911eb62cbbSBarry Smith   return MatGetDiagonal(A->A,v);
4921eb62cbbSBarry Smith }
4931eb62cbbSBarry Smith 
49444a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj)
4951eb62cbbSBarry Smith {
4961eb62cbbSBarry Smith   Mat        mat = (Mat) obj;
49744a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
4981eb62cbbSBarry Smith   int        ierr;
499a5a9c739SBarry Smith #if defined(PETSC_LOG)
5006e35fa57SLois Curfman McInnes   PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N);
501a5a9c739SBarry Smith #endif
50278b31e54SBarry Smith   PETSCFREE(aij->rowners);
50378b31e54SBarry Smith   ierr = MatDestroy(aij->A); CHKERRQ(ierr);
50478b31e54SBarry Smith   ierr = MatDestroy(aij->B); CHKERRQ(ierr);
50578b31e54SBarry Smith   if (aij->colmap) PETSCFREE(aij->colmap);
50678b31e54SBarry Smith   if (aij->garray) PETSCFREE(aij->garray);
5071eb62cbbSBarry Smith   if (aij->lvec) VecDestroy(aij->lvec);
5081eb62cbbSBarry Smith   if (aij->Mvctx) VecScatterCtxDestroy(aij->Mvctx);
50978b31e54SBarry Smith   PETSCFREE(aij);
510a5a9c739SBarry Smith   PLogObjectDestroy(mat);
511a5a9c739SBarry Smith   PETSCHEADERDESTROY(mat);
5121eb62cbbSBarry Smith   return 0;
5131eb62cbbSBarry Smith }
5147857610eSBarry Smith #include "draw.h"
515ee50ffe9SBarry Smith #include "pviewer.h"
516ee50ffe9SBarry Smith 
51744a69424SLois Curfman McInnes static int MatView_MPIAIJ(PetscObject obj,Viewer viewer)
5181eb62cbbSBarry Smith {
5191eb62cbbSBarry Smith   Mat         mat = (Mat) obj;
52044a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
521f72585f2SLois Curfman McInnes   int         ierr, format;
522d13ab20cSBarry Smith   PetscObject vobj = (PetscObject) viewer;
5231eb62cbbSBarry Smith 
52478b31e54SBarry Smith   if (!aij->assembled) SETERRQ(1,"MatView_MPIAIJ:must assemble matrix first");
525154123eaSLois Curfman McInnes   if (!viewer) { /* so that viewers may be used from debuggers */
526*21b0d8fbSLois Curfman McInnes     viewer = STDOUT_VIEWER_SELF; vobj = (PetscObject) viewer;
527154123eaSLois Curfman McInnes   }
528ab254492SBarry Smith   if (vobj->cookie == DRAW_COOKIE && vobj->type == NULLWINDOW) return 0;
529f72585f2SLois Curfman McInnes   format = ViewerFileGetFormat_Private(viewer);
530f72585f2SLois Curfman McInnes   if (vobj->cookie == VIEWER_COOKIE && format == FILE_FORMAT_INFO &&
531f72585f2SLois Curfman McInnes      (vobj->type == FILE_VIEWER || vobj->type == FILES_VIEWER)) {
532f72585f2SLois Curfman McInnes    /* do nothing for now */
533f72585f2SLois Curfman McInnes   }
534f72585f2SLois Curfman McInnes   else if (vobj->cookie == VIEWER_COOKIE && vobj->type == FILE_VIEWER) {
5354a0ce102SLois Curfman McInnes     FILE *fd = ViewerFileGetPointer_Private(viewer);
5367f813858SBarry Smith     MPIU_Seq_begin(mat->comm,1);
537d13ab20cSBarry Smith     fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n",
5381eb62cbbSBarry Smith            aij->mytid,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart,
5391eb62cbbSBarry Smith            aij->cend);
54078b31e54SBarry Smith     ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
54178b31e54SBarry Smith     ierr = MatView(aij->B,viewer); CHKERRQ(ierr);
542d13ab20cSBarry Smith     fflush(fd);
5437f813858SBarry Smith     MPIU_Seq_end(mat->comm,1);
544d13ab20cSBarry Smith   }
5457857610eSBarry Smith   else if ((vobj->cookie == VIEWER_COOKIE && vobj->type == FILES_VIEWER) ||
5467857610eSBarry Smith             vobj->cookie == DRAW_COOKIE) {
54795373324SBarry Smith     int numtids = aij->numtids, mytid = aij->mytid;
54895373324SBarry Smith     if (numtids == 1) {
54978b31e54SBarry Smith       ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
55095373324SBarry Smith     }
55195373324SBarry Smith     else {
55295373324SBarry Smith       /* assemble the entire matrix onto first processor. */
55395373324SBarry Smith       Mat     A;
5542ee70a88SLois Curfman McInnes       Mat_AIJ *Aloc;
5552eb8c8abSBarry Smith       int     M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct;
55695373324SBarry Smith       Scalar  *a;
5572ee70a88SLois Curfman McInnes 
55895373324SBarry Smith       if (!mytid) {
55995373324SBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,0,0,0,&A);
56095373324SBarry Smith       }
56195373324SBarry Smith       else {
56295373324SBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,0,0,0,&A);
56395373324SBarry Smith       }
564464493b3SBarry Smith       PLogObjectParent(mat,A);
56578b31e54SBarry Smith       CHKERRQ(ierr);
56695373324SBarry Smith 
56795373324SBarry Smith       /* copy over the A part */
5682ee70a88SLois Curfman McInnes       Aloc = (Mat_AIJ*) aij->A->data;
5692ee70a88SLois Curfman McInnes       m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
57095373324SBarry Smith       row = aij->rstart;
571b7c46309SBarry Smith       for ( i=0; i<ai[m]-1; i++ ) {aj[i] += aij->cstart - 1;}
57295373324SBarry Smith       for ( i=0; i<m; i++ ) {
57307a0e7adSLois Curfman McInnes         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERTVALUES);
57478b31e54SBarry Smith         CHKERRQ(ierr);
57595373324SBarry Smith         row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
57695373324SBarry Smith       }
5772ee70a88SLois Curfman McInnes       aj = Aloc->j;
578b7c46309SBarry Smith       for ( i=0; i<ai[m]-1; i++ ) {aj[i] -= aij->cstart - 1;}
57995373324SBarry Smith 
58095373324SBarry Smith       /* copy over the B part */
5812ee70a88SLois Curfman McInnes       Aloc = (Mat_AIJ*) aij->B->data;
5822ee70a88SLois Curfman McInnes       m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
58395373324SBarry Smith       row = aij->rstart;
58478b31e54SBarry Smith       ct = cols = (int *) PETSCMALLOC( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols);
585b7c46309SBarry Smith       for ( i=0; i<ai[m]-1; i++ ) {cols[i] = aij->garray[aj[i]-1];}
58695373324SBarry Smith       for ( i=0; i<m; i++ ) {
58707a0e7adSLois Curfman McInnes         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERTVALUES);
58878b31e54SBarry Smith         CHKERRQ(ierr);
58995373324SBarry Smith         row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
59095373324SBarry Smith       }
59178b31e54SBarry Smith       PETSCFREE(ct);
59278b31e54SBarry Smith       ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
59378b31e54SBarry Smith       ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr);
59495373324SBarry Smith       if (!mytid) {
59578b31e54SBarry Smith         ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr);
59695373324SBarry Smith       }
59778b31e54SBarry Smith       ierr = MatDestroy(A); CHKERRQ(ierr);
59895373324SBarry Smith     }
59995373324SBarry Smith   }
6001eb62cbbSBarry Smith   return 0;
6011eb62cbbSBarry Smith }
6021eb62cbbSBarry Smith 
60380b4ade8SLois Curfman McInnes extern int MatMarkDiag_AIJ(Mat);
6041eb62cbbSBarry Smith /*
6051eb62cbbSBarry Smith     This has to provide several versions.
6061eb62cbbSBarry Smith 
6071eb62cbbSBarry Smith      1) per sequential
6081eb62cbbSBarry Smith      2) a) use only local smoothing updating outer values only once.
6091eb62cbbSBarry Smith         b) local smoothing updating outer values each inner iteration
610d6dfbf8fSBarry Smith      3) color updating out values betwen colors.
6111eb62cbbSBarry Smith */
612fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag,
613fc76ce87SLois Curfman McInnes                            double shift,int its,Vec xx)
6148a729477SBarry Smith {
61544a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
616d6dfbf8fSBarry Smith   Mat        AA = mat->A, BB = mat->B;
61744a69424SLois Curfman McInnes   Mat_AIJ    *A = (Mat_AIJ *) AA->data, *B = (Mat_AIJ *)BB->data;
6186abc6512SBarry Smith   Scalar     zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts;
6196abc6512SBarry Smith   int        ierr,*idx, *diag;
6206abc6512SBarry Smith   int        n = mat->n, m = mat->m, i;
621da3a660dSBarry Smith   Vec        tt;
6228a729477SBarry Smith 
62378b31e54SBarry Smith   if (!mat->assembled) SETERRQ(1,"MatRelax_MPIAIJ:must assemble matrix first");
6241eb62cbbSBarry Smith 
625d6dfbf8fSBarry Smith   VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls);
626d6dfbf8fSBarry Smith   xs = x -1; /* shift by one for index start of 1 */
627da3a660dSBarry Smith   ls--;
62880b4ade8SLois Curfman McInnes   if (!A->diag) {if ((ierr = MatMarkDiag_AIJ(AA))) return ierr;}
629d6dfbf8fSBarry Smith   diag = A->diag;
630acb40c82SBarry Smith   if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) {
63142f8db3fSLois Curfman McInnes     SETERRQ(1,"MatRelax_MPIAIJ:Option not yet supported");
632acb40c82SBarry Smith   }
633da3a660dSBarry Smith   if (flag & SOR_EISENSTAT) {
634da3a660dSBarry Smith     /* Let  A = L + U + D; where L is lower trianglar,
635da3a660dSBarry Smith     U is upper triangular, E is diagonal; This routine applies
636da3a660dSBarry Smith 
637da3a660dSBarry Smith             (L + E)^{-1} A (U + E)^{-1}
638da3a660dSBarry Smith 
639da3a660dSBarry Smith     to a vector efficiently using Eisenstat's trick. This is for
640da3a660dSBarry Smith     the case of SSOR preconditioner, so E is D/omega where omega
641da3a660dSBarry Smith     is the relaxation factor.
642da3a660dSBarry Smith     */
64378b31e54SBarry Smith     ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr);
644464493b3SBarry Smith     PLogObjectParent(matin,tt);
645da3a660dSBarry Smith     VecGetArray(tt,&t);
646da3a660dSBarry Smith     scale = (2.0/omega) - 1.0;
647da3a660dSBarry Smith     /*  x = (E + U)^{-1} b */
648da3a660dSBarry Smith     VecSet(&zero,mat->lvec);
64906be10caSBarry Smith     ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEUP,
65078b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
651da3a660dSBarry Smith     for ( i=m-1; i>-1; i-- ) {
652da3a660dSBarry Smith       n    = A->i[i+1] - diag[i] - 1;
653da3a660dSBarry Smith       idx  = A->j + diag[i];
654da3a660dSBarry Smith       v    = A->a + diag[i];
655da3a660dSBarry Smith       sum  = b[i];
656da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,xs,v,idx,n);
657da3a660dSBarry Smith       d    = shift + A->a[diag[i]-1];
658da3a660dSBarry Smith       n    = B->i[i+1] - B->i[i];
659da3a660dSBarry Smith       idx  = B->j + B->i[i] - 1;
660da3a660dSBarry Smith       v    = B->a + B->i[i] - 1;
661da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ls,v,idx,n);
662da3a660dSBarry Smith       x[i] = omega*(sum/d);
663da3a660dSBarry Smith     }
664edd2f0e1SBarry Smith     ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEUP,
66578b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
666da3a660dSBarry Smith 
667da3a660dSBarry Smith     /*  t = b - (2*E - D)x */
668da3a660dSBarry Smith     v = A->a;
669da3a660dSBarry Smith     for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ - 1])*x[i]; }
670da3a660dSBarry Smith 
671da3a660dSBarry Smith     /*  t = (E + L)^{-1}t */
672da3a660dSBarry Smith     ts = t - 1; /* shifted by one for index start of a or mat->j*/
673da3a660dSBarry Smith     diag = A->diag;
674da3a660dSBarry Smith     VecSet(&zero,mat->lvec);
67506be10caSBarry Smith     ierr = VecPipelineBegin(tt,mat->lvec,INSERTVALUES,PIPELINEDOWN,
67678b31e54SBarry Smith                                                  mat->Mvctx); CHKERRQ(ierr);
677da3a660dSBarry Smith     for ( i=0; i<m; i++ ) {
678da3a660dSBarry Smith       n    = diag[i] - A->i[i];
679da3a660dSBarry Smith       idx  = A->j + A->i[i] - 1;
680da3a660dSBarry Smith       v    = A->a + A->i[i] - 1;
681da3a660dSBarry Smith       sum  = t[i];
682da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ts,v,idx,n);
683da3a660dSBarry Smith       d    = shift + A->a[diag[i]-1];
684da3a660dSBarry Smith       n    = B->i[i+1] - B->i[i];
685da3a660dSBarry Smith       idx  = B->j + B->i[i] - 1;
686da3a660dSBarry Smith       v    = B->a + B->i[i] - 1;
687da3a660dSBarry Smith       SPARSEDENSEMDOT(sum,ls,v,idx,n);
688da3a660dSBarry Smith       t[i] = omega*(sum/d);
689da3a660dSBarry Smith     }
690edd2f0e1SBarry Smith     ierr = VecPipelineEnd(tt,mat->lvec,INSERTVALUES,PIPELINEDOWN,
69178b31e54SBarry Smith                                                     mat->Mvctx); CHKERRQ(ierr);
692da3a660dSBarry Smith     /*  x = x + t */
693da3a660dSBarry Smith     for ( i=0; i<m; i++ ) { x[i] += t[i]; }
694da3a660dSBarry Smith     VecDestroy(tt);
695da3a660dSBarry Smith     return 0;
696da3a660dSBarry Smith   }
697da3a660dSBarry Smith 
6981eb62cbbSBarry Smith 
699d6dfbf8fSBarry Smith   if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){
700da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
701da3a660dSBarry Smith       VecSet(&zero,mat->lvec); VecSet(&zero,xx);
702da3a660dSBarry Smith     }
703da3a660dSBarry Smith     else {
70406be10caSBarry Smith       ierr=VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERUP,mat->Mvctx);
70578b31e54SBarry Smith       CHKERRQ(ierr);
70606be10caSBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERUP,mat->Mvctx);
70778b31e54SBarry Smith       CHKERRQ(ierr);
708da3a660dSBarry Smith     }
709d6dfbf8fSBarry Smith     while (its--) {
710d6dfbf8fSBarry Smith       /* go down through the rows */
71106be10caSBarry Smith       ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN,
71278b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
713d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
714d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
715d6dfbf8fSBarry Smith         idx  = A->j + A->i[i] - 1;
716d6dfbf8fSBarry Smith         v    = A->a + A->i[i] - 1;
717d6dfbf8fSBarry Smith         sum  = b[i];
718d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
719d6dfbf8fSBarry Smith         d    = shift + A->a[diag[i]-1];
720d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
721d6dfbf8fSBarry Smith         idx  = B->j + B->i[i] - 1;
722d6dfbf8fSBarry Smith         v    = B->a + B->i[i] - 1;
723d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
724d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
725d6dfbf8fSBarry Smith       }
726edd2f0e1SBarry Smith       ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN,
72778b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
728d6dfbf8fSBarry Smith       /* come up through the rows */
72906be10caSBarry Smith       ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEUP,
73078b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
731d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
732d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
733d6dfbf8fSBarry Smith         idx  = A->j + A->i[i] - 1;
734d6dfbf8fSBarry Smith         v    = A->a + A->i[i] - 1;
735d6dfbf8fSBarry Smith         sum  = b[i];
736d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
737d6dfbf8fSBarry Smith         d    = shift + A->a[diag[i]-1];
738d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
739d6dfbf8fSBarry Smith         idx  = B->j + B->i[i] - 1;
740d6dfbf8fSBarry Smith         v    = B->a + B->i[i] - 1;
741d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
742d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
743d6dfbf8fSBarry Smith       }
744edd2f0e1SBarry Smith       ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEUP,
74578b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
746d6dfbf8fSBarry Smith     }
747d6dfbf8fSBarry Smith   }
748d6dfbf8fSBarry Smith   else if (flag & SOR_FORWARD_SWEEP){
749da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
750da3a660dSBarry Smith       VecSet(&zero,mat->lvec);
75106be10caSBarry Smith       ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN,
75278b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
753da3a660dSBarry Smith       for ( i=0; i<m; i++ ) {
754da3a660dSBarry Smith         n    = diag[i] - A->i[i];
755da3a660dSBarry Smith         idx  = A->j + A->i[i] - 1;
756da3a660dSBarry Smith         v    = A->a + A->i[i] - 1;
757da3a660dSBarry Smith         sum  = b[i];
758da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
759da3a660dSBarry Smith         d    = shift + A->a[diag[i]-1];
760da3a660dSBarry Smith         n    = B->i[i+1] - B->i[i];
761da3a660dSBarry Smith         idx  = B->j + B->i[i] - 1;
762da3a660dSBarry Smith         v    = B->a + B->i[i] - 1;
763da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
764da3a660dSBarry Smith         x[i] = omega*(sum/d);
765da3a660dSBarry Smith       }
766edd2f0e1SBarry Smith       ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN,
76778b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
768da3a660dSBarry Smith       its--;
769da3a660dSBarry Smith     }
770d6dfbf8fSBarry Smith     while (its--) {
77106be10caSBarry Smith       ierr=VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERUP,mat->Mvctx);
77278b31e54SBarry Smith       CHKERRQ(ierr);
77306be10caSBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERUP,mat->Mvctx);
77478b31e54SBarry Smith       CHKERRQ(ierr);
77506be10caSBarry Smith       ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN,
77678b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
777d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
778d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
779d6dfbf8fSBarry Smith         idx  = A->j + A->i[i] - 1;
780d6dfbf8fSBarry Smith         v    = A->a + A->i[i] - 1;
781d6dfbf8fSBarry Smith         sum  = b[i];
782d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
783d6dfbf8fSBarry Smith         d    = shift + A->a[diag[i]-1];
784d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
785d6dfbf8fSBarry Smith         idx  = B->j + B->i[i] - 1;
786d6dfbf8fSBarry Smith         v    = B->a + B->i[i] - 1;
787d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
788d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
789d6dfbf8fSBarry Smith       }
790edd2f0e1SBarry Smith       ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEDOWN,
79178b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
792d6dfbf8fSBarry Smith     }
793d6dfbf8fSBarry Smith   }
794d6dfbf8fSBarry Smith   else if (flag & SOR_BACKWARD_SWEEP){
795da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
796da3a660dSBarry Smith       VecSet(&zero,mat->lvec);
79706be10caSBarry Smith       ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEUP,
79878b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
799da3a660dSBarry Smith       for ( i=m-1; i>-1; i-- ) {
800da3a660dSBarry Smith         n    = A->i[i+1] - diag[i] - 1;
801da3a660dSBarry Smith         idx  = A->j + diag[i];
802da3a660dSBarry Smith         v    = A->a + diag[i];
803da3a660dSBarry Smith         sum  = b[i];
804da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
805da3a660dSBarry Smith         d    = shift + A->a[diag[i]-1];
806da3a660dSBarry Smith         n    = B->i[i+1] - B->i[i];
807da3a660dSBarry Smith         idx  = B->j + B->i[i] - 1;
808da3a660dSBarry Smith         v    = B->a + B->i[i] - 1;
809da3a660dSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
810da3a660dSBarry Smith         x[i] = omega*(sum/d);
811da3a660dSBarry Smith       }
812edd2f0e1SBarry Smith       ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEUP,
81378b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
814da3a660dSBarry Smith       its--;
815da3a660dSBarry Smith     }
816d6dfbf8fSBarry Smith     while (its--) {
81706be10caSBarry Smith       ierr = VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERDOWN,
81878b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
81906be10caSBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERDOWN,
82078b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
82106be10caSBarry Smith       ierr = VecPipelineBegin(xx,mat->lvec,INSERTVALUES,PIPELINEUP,
82278b31e54SBarry Smith                               mat->Mvctx); CHKERRQ(ierr);
823d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
824d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
825d6dfbf8fSBarry Smith         idx  = A->j + A->i[i] - 1;
826d6dfbf8fSBarry Smith         v    = A->a + A->i[i] - 1;
827d6dfbf8fSBarry Smith         sum  = b[i];
828d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
829d6dfbf8fSBarry Smith         d    = shift + A->a[diag[i]-1];
830d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
831d6dfbf8fSBarry Smith         idx  = B->j + B->i[i] - 1;
832d6dfbf8fSBarry Smith         v    = B->a + B->i[i] - 1;
833d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
834d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
835d6dfbf8fSBarry Smith       }
836edd2f0e1SBarry Smith       ierr = VecPipelineEnd(xx,mat->lvec,INSERTVALUES,PIPELINEUP,
83778b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
838d6dfbf8fSBarry Smith     }
839d6dfbf8fSBarry Smith   }
840d6dfbf8fSBarry Smith   else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
841da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
842da3a660dSBarry Smith       return MatRelax(mat->A,bb,omega,flag,shift,its,xx);
843da3a660dSBarry Smith     }
84406be10caSBarry Smith     ierr=VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERALL,mat->Mvctx);
84578b31e54SBarry Smith     CHKERRQ(ierr);
84606be10caSBarry Smith     ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERALL,mat->Mvctx);
84778b31e54SBarry Smith     CHKERRQ(ierr);
848d6dfbf8fSBarry Smith     while (its--) {
849d6dfbf8fSBarry Smith       /* go down through the rows */
850d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
851d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
852d6dfbf8fSBarry Smith         idx  = A->j + A->i[i] - 1;
853d6dfbf8fSBarry Smith         v    = A->a + A->i[i] - 1;
854d6dfbf8fSBarry Smith         sum  = b[i];
855d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
856d6dfbf8fSBarry Smith         d    = shift + A->a[diag[i]-1];
857d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
858d6dfbf8fSBarry Smith         idx  = B->j + B->i[i] - 1;
859d6dfbf8fSBarry Smith         v    = B->a + B->i[i] - 1;
860d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
861d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
862d6dfbf8fSBarry Smith       }
863d6dfbf8fSBarry Smith       /* come up through the rows */
864d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
865d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
866d6dfbf8fSBarry Smith         idx  = A->j + A->i[i] - 1;
867d6dfbf8fSBarry Smith         v    = A->a + A->i[i] - 1;
868d6dfbf8fSBarry Smith         sum  = b[i];
869d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
870d6dfbf8fSBarry Smith         d    = shift + A->a[diag[i]-1];
871d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
872d6dfbf8fSBarry Smith         idx  = B->j + B->i[i] - 1;
873d6dfbf8fSBarry Smith         v    = B->a + B->i[i] - 1;
874d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
875d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
876d6dfbf8fSBarry Smith       }
877d6dfbf8fSBarry Smith     }
878d6dfbf8fSBarry Smith   }
879d6dfbf8fSBarry Smith   else if (flag & SOR_LOCAL_FORWARD_SWEEP){
880da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
881da3a660dSBarry Smith       return MatRelax(mat->A,bb,omega,flag,shift,its,xx);
882da3a660dSBarry Smith     }
88306be10caSBarry Smith     ierr=VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERALL,mat->Mvctx);
88478b31e54SBarry Smith     CHKERRQ(ierr);
88506be10caSBarry Smith     ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERALL,mat->Mvctx);
88678b31e54SBarry Smith     CHKERRQ(ierr);
887d6dfbf8fSBarry Smith     while (its--) {
888d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
889d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
890d6dfbf8fSBarry Smith         idx  = A->j + A->i[i] - 1;
891d6dfbf8fSBarry Smith         v    = A->a + A->i[i] - 1;
892d6dfbf8fSBarry Smith         sum  = b[i];
893d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
894d6dfbf8fSBarry Smith         d    = shift + A->a[diag[i]-1];
895d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
896d6dfbf8fSBarry Smith         idx  = B->j + B->i[i] - 1;
897d6dfbf8fSBarry Smith         v    = B->a + B->i[i] - 1;
898d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
899d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
900d6dfbf8fSBarry Smith       }
901d6dfbf8fSBarry Smith     }
902d6dfbf8fSBarry Smith   }
903d6dfbf8fSBarry Smith   else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
904da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
905da3a660dSBarry Smith       return MatRelax(mat->A,bb,omega,flag,shift,its,xx);
906da3a660dSBarry Smith     }
90706be10caSBarry Smith     ierr = VecScatterBegin(xx,mat->lvec,INSERTVALUES,SCATTERALL,
90878b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
90906be10caSBarry Smith     ierr = VecScatterEnd(xx,mat->lvec,INSERTVALUES,SCATTERALL,
91078b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
911d6dfbf8fSBarry Smith     while (its--) {
912d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
913d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
914d6dfbf8fSBarry Smith         idx  = A->j + A->i[i] - 1;
915d6dfbf8fSBarry Smith         v    = A->a + A->i[i] - 1;
916d6dfbf8fSBarry Smith         sum  = b[i];
917d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
918d6dfbf8fSBarry Smith         d    = shift + A->a[diag[i]-1];
919d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
920d6dfbf8fSBarry Smith         idx  = B->j + B->i[i] - 1;
921d6dfbf8fSBarry Smith         v    = B->a + B->i[i] - 1;
922d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
923d6dfbf8fSBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]);
924d6dfbf8fSBarry Smith       }
925d6dfbf8fSBarry Smith     }
926d6dfbf8fSBarry Smith   }
9278a729477SBarry Smith   return 0;
9288a729477SBarry Smith }
929a66be287SLois Curfman McInnes 
930fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz,
931fc76ce87SLois Curfman McInnes                              int *nzalloc,int *mem)
932a66be287SLois Curfman McInnes {
933a66be287SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
934a66be287SLois Curfman McInnes   Mat        A = mat->A, B = mat->B;
935a66be287SLois Curfman McInnes   int        ierr, isend[3], irecv[3], nzA, nzallocA, memA;
936a66be287SLois Curfman McInnes 
93778b31e54SBarry Smith   ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr);
93878b31e54SBarry Smith   ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr);
939a66be287SLois Curfman McInnes   isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA;
940a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
941a66be287SLois Curfman McInnes     *nz = isend[0]; *nzalloc = isend[1]; *mem = isend[2];
942a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
943a66be287SLois Curfman McInnes     MPI_Allreduce((void *) isend,(void *) irecv,3,MPI_INT,MPI_MAX,matin->comm);
944a66be287SLois Curfman McInnes     *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2];
945a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
946a66be287SLois Curfman McInnes     MPI_Allreduce((void *) isend,(void *) irecv,3,MPI_INT,MPI_SUM,matin->comm);
947a66be287SLois Curfman McInnes     *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2];
948a66be287SLois Curfman McInnes   }
949a66be287SLois Curfman McInnes   return 0;
950a66be287SLois Curfman McInnes }
951a66be287SLois Curfman McInnes 
952299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*);
953299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*);
954299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double);
955299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *);
956299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec);
957299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec);
958299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec);
959299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec);
960299609e3SLois Curfman McInnes 
961fc76ce87SLois Curfman McInnes static int MatSetOption_MPIAIJ(Mat aijin,MatOption op)
962c74985f6SBarry Smith {
96344a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data;
964c74985f6SBarry Smith 
965c74985f6SBarry Smith   if      (op == NO_NEW_NONZERO_LOCATIONS)  {
966c74985f6SBarry Smith     MatSetOption(aij->A,op);
967c74985f6SBarry Smith     MatSetOption(aij->B,op);
968c74985f6SBarry Smith   }
969c74985f6SBarry Smith   else if (op == YES_NEW_NONZERO_LOCATIONS) {
970c74985f6SBarry Smith     MatSetOption(aij->A,op);
971c74985f6SBarry Smith     MatSetOption(aij->B,op);
972c74985f6SBarry Smith   }
973bbb6d6a8SBarry Smith   else if (op == COLUMN_ORIENTED)
974bbb6d6a8SBarry Smith     SETERRQ(1,"MatSetOption_MPIAIJ:Column oriented not supported");
975c74985f6SBarry Smith   return 0;
976c74985f6SBarry Smith }
977c74985f6SBarry Smith 
978d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n)
979c74985f6SBarry Smith {
98044a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
981c74985f6SBarry Smith   *m = mat->M; *n = mat->N;
982c74985f6SBarry Smith   return 0;
983c74985f6SBarry Smith }
984c74985f6SBarry Smith 
985d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n)
986c74985f6SBarry Smith {
98744a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
988b7c46309SBarry Smith   *m = mat->m; *n = mat->N;
989c74985f6SBarry Smith   return 0;
990c74985f6SBarry Smith }
991c74985f6SBarry Smith 
992d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n)
993c74985f6SBarry Smith {
99444a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
995c74985f6SBarry Smith   *m = mat->rstart; *n = mat->rend;
996c74985f6SBarry Smith   return 0;
997c74985f6SBarry Smith }
998c74985f6SBarry Smith 
99939e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v)
100039e00950SLois Curfman McInnes {
1001154123eaSLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1002154123eaSLois Curfman McInnes   Scalar     *vworkA, *vworkB, **pvA, **pvB;
1003154123eaSLois Curfman McInnes   int        i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart;
1004154123eaSLois Curfman McInnes   int        nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend;
100539e00950SLois Curfman McInnes 
100639e00950SLois Curfman McInnes   if (row < rstart || row >= rend)
1007bbb6d6a8SBarry Smith     SETERRQ(1,"MatGetRow_MPIAIJ:Currently you can get only local rows")
1008abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
100939e00950SLois Curfman McInnes 
1010154123eaSLois Curfman McInnes   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1011154123eaSLois Curfman McInnes   if (!v)   {pvA = 0; pvB = 0;}
1012154123eaSLois Curfman McInnes   if (!idx) {pcA = 0; if (!v) pcB = 0;}
101378b31e54SBarry Smith   ierr = MatGetRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
101478b31e54SBarry Smith   ierr = MatGetRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
1015154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1016154123eaSLois Curfman McInnes 
1017154123eaSLois Curfman McInnes   if (v  || idx) {
1018154123eaSLois Curfman McInnes     if (nztot) {
1019154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1020299609e3SLois Curfman McInnes       int imark;
102148b35521SBarry Smith       if (mat->assembled) {
1022154123eaSLois Curfman McInnes         for (i=0; i<nzB; i++) cworkB[i] = mat->garray[cworkB[i]];
102348b35521SBarry Smith       }
1024154123eaSLois Curfman McInnes       if (v) {
102578b31e54SBarry Smith         *v = (Scalar *) PETSCMALLOC( (nztot)*sizeof(Scalar) ); CHKPTRQ(*v);
102639e00950SLois Curfman McInnes         for ( i=0; i<nzB; i++ ) {
1027154123eaSLois Curfman McInnes           if (cworkB[i] < cstart)   (*v)[i] = vworkB[i];
1028154123eaSLois Curfman McInnes           else break;
1029154123eaSLois Curfman McInnes         }
1030154123eaSLois Curfman McInnes         imark = i;
1031154123eaSLois Curfman McInnes         for ( i=0; i<nzA; i++ )     (*v)[imark+i] = vworkA[i];
1032299609e3SLois Curfman McInnes         for ( i=imark; i<nzB; i++ ) (*v)[nzA+i] = vworkB[i];
1033154123eaSLois Curfman McInnes       }
1034154123eaSLois Curfman McInnes       if (idx) {
103578b31e54SBarry Smith         *idx = (int *) PETSCMALLOC( (nztot)*sizeof(int) ); CHKPTRQ(*idx);
1036154123eaSLois Curfman McInnes         for (i=0; i<nzA; i++) cworkA[i] += cstart;
1037154123eaSLois Curfman McInnes         for ( i=0; i<nzB; i++ ) {
1038154123eaSLois Curfman McInnes           if (cworkB[i] < cstart)   (*idx)[i] = cworkB[i];
1039154123eaSLois Curfman McInnes           else break;
1040154123eaSLois Curfman McInnes         }
1041154123eaSLois Curfman McInnes         imark = i;
1042154123eaSLois Curfman McInnes         for ( i=0; i<nzA; i++ )     (*idx)[imark+i] = cworkA[i];
1043299609e3SLois Curfman McInnes         for ( i=imark; i<nzB; i++ ) (*idx)[nzA+i] = cworkB[i];
104439e00950SLois Curfman McInnes       }
104539e00950SLois Curfman McInnes     }
104639e00950SLois Curfman McInnes     else {*idx = 0; *v=0;}
1047154123eaSLois Curfman McInnes   }
104839e00950SLois Curfman McInnes   *nz = nztot;
104978b31e54SBarry Smith   ierr = MatRestoreRow(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
105078b31e54SBarry Smith   ierr = MatRestoreRow(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
105139e00950SLois Curfman McInnes   return 0;
105239e00950SLois Curfman McInnes }
105339e00950SLois Curfman McInnes 
105439e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v)
105539e00950SLois Curfman McInnes {
105678b31e54SBarry Smith   if (idx) PETSCFREE(*idx);
105778b31e54SBarry Smith   if (v) PETSCFREE(*v);
105839e00950SLois Curfman McInnes   return 0;
105939e00950SLois Curfman McInnes }
106039e00950SLois Curfman McInnes 
1061855ac2c5SLois Curfman McInnes static int MatNorm_MPIAIJ(Mat mat,MatNormType type,double *norm)
1062855ac2c5SLois Curfman McInnes {
1063855ac2c5SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
1064855ac2c5SLois Curfman McInnes   int ierr;
1065855ac2c5SLois Curfman McInnes   if (aij->numtids == 1) {
106614183eadSLois Curfman McInnes     ierr =  MatNorm(aij->A,type,norm); CHKERRQ(ierr);
1067855ac2c5SLois Curfman McInnes   } else
1068bbb6d6a8SBarry Smith     SETERRQ(1,"MatNorm_MPIAIJ:not yet supported in parallel");
1069855ac2c5SLois Curfman McInnes   return 0;
1070855ac2c5SLois Curfman McInnes }
1071855ac2c5SLois Curfman McInnes 
1072b7c46309SBarry Smith static int MatTranspose_MPIAIJ(Mat A,Mat *Bin)
1073b7c46309SBarry Smith {
1074b7c46309SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
1075b7c46309SBarry Smith   int        ierr;
1076b7c46309SBarry Smith   Mat        B;
1077b7c46309SBarry Smith   Mat_AIJ    *Aloc;
1078b7c46309SBarry Smith   int        M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct;
1079b7c46309SBarry Smith   Scalar     *array;
1080b7c46309SBarry Smith 
1081b7c46309SBarry Smith   ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,0,0,0,&B);
1082b7c46309SBarry Smith   CHKERRQ(ierr);
1083b7c46309SBarry Smith 
1084b7c46309SBarry Smith   /* copy over the A part */
1085b7c46309SBarry Smith   Aloc = (Mat_AIJ*) a->A->data;
1086b7c46309SBarry Smith   m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1087b7c46309SBarry Smith   row = a->rstart;
1088b7c46309SBarry Smith   for ( i=0; i<ai[m]-1; i++ ) {aj[i] += a->cstart - 1;}
1089b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1090b7c46309SBarry Smith       ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERTVALUES);
1091b7c46309SBarry Smith       CHKERRQ(ierr);
1092b7c46309SBarry Smith       row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
1093b7c46309SBarry Smith   }
1094b7c46309SBarry Smith   aj = Aloc->j;
1095b7c46309SBarry Smith   for ( i=0; i<ai[m]-1; i++ ) {aj[i] -= a->cstart - 1;}
1096b7c46309SBarry Smith 
1097b7c46309SBarry Smith   /* copy over the B part */
1098b7c46309SBarry Smith   Aloc = (Mat_AIJ*) a->B->data;
1099b7c46309SBarry Smith   m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1100b7c46309SBarry Smith   row = a->rstart;
1101b7c46309SBarry Smith   ct = cols = (int *) PETSCMALLOC( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols);
1102b7c46309SBarry Smith   for ( i=0; i<ai[m]-1; i++ ) {cols[i] = a->garray[aj[i]-1];}
1103b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1104b7c46309SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERTVALUES);
1105b7c46309SBarry Smith     CHKERRQ(ierr);
1106b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
1107b7c46309SBarry Smith   }
1108b7c46309SBarry Smith   PETSCFREE(ct);
1109b7c46309SBarry Smith   ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr);
1110b7c46309SBarry Smith   ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr);
1111b7c46309SBarry Smith   *Bin = B;
1112b7c46309SBarry Smith   return 0;
1113b7c46309SBarry Smith }
1114b7c46309SBarry Smith 
1115fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *);
1116ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat,Mat *);
1117d6dfbf8fSBarry Smith 
11188a729477SBarry Smith /* -------------------------------------------------------------------*/
11192ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ,
112039e00950SLois Curfman McInnes        MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ,
112144a69424SLois Curfman McInnes        MatMult_MPIAIJ,MatMultAdd_MPIAIJ,
112244a69424SLois Curfman McInnes        MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ,
1123299609e3SLois Curfman McInnes        MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ,
1124299609e3SLois Curfman McInnes        MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ,
1125299609e3SLois Curfman McInnes        MatLUFactor_MPIAIJ,0,
112644a69424SLois Curfman McInnes        MatRelax_MPIAIJ,
1127b7c46309SBarry Smith        MatTranspose_MPIAIJ,
1128a66be287SLois Curfman McInnes        MatGetInfo_MPIAIJ,0,
1129855ac2c5SLois Curfman McInnes        MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ,
1130ee50ffe9SBarry Smith        MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ,
11311eb62cbbSBarry Smith        0,
1132299609e3SLois Curfman McInnes        MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ,
1133299609e3SLois Curfman McInnes        MatGetReordering_MPIAIJ,
1134299609e3SLois Curfman McInnes        MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0,
1135d1710a03SLois Curfman McInnes        MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ,
1136299609e3SLois Curfman McInnes        MatILUFactorSymbolic_MPIAIJ,0,
1137ff7509f2SBarry Smith        0,0,MatConvert_MPIAIJ,0,0,MatCopyPrivate_MPIAIJ};
11388a729477SBarry Smith 
11398a729477SBarry Smith /*@
1140ff756334SLois Curfman McInnes    MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format
1141ff756334SLois Curfman McInnes    (the default parallel PETSc format).
11428a729477SBarry Smith 
11438a729477SBarry Smith    Input Parameters:
11441eb62cbbSBarry Smith .  comm - MPI communicator
11457d3e4905SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
11467d3e4905SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated
11477d3e4905SLois Curfman McInnes            if N is given)
11487d3e4905SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
11497d3e4905SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated
11507d3e4905SLois Curfman McInnes            if n is given)
1151ab693e5aSLois Curfman McInnes .  d_nz - number of nonzeros per row in diagonal portion of local submatrix
1152ff756334SLois Curfman McInnes            (same for all local rows)
1153ab693e5aSLois Curfman McInnes .  d_nzz - number of nonzeros per row in diagonal portion of local submatrix
1154ab693e5aSLois Curfman McInnes            or null (possibly different for each row).  You must leave room
1155ab693e5aSLois Curfman McInnes            for the diagonal entry even if it is zero.
1156ab693e5aSLois Curfman McInnes .  o_nz - number of nonzeros per row in off-diagonal portion of local
1157ab693e5aSLois Curfman McInnes            submatrix (same for all local rows).
1158ab693e5aSLois Curfman McInnes .  o_nzz - number of nonzeros per row in off-diagonal portion of local
1159ab693e5aSLois Curfman McInnes            submatrix or null (possibly different for each row).
11608a729477SBarry Smith 
1161ff756334SLois Curfman McInnes    Output Parameter:
11628a729477SBarry Smith .  newmat - the matrix
11638a729477SBarry Smith 
1164ff756334SLois Curfman McInnes    Notes:
1165ff756334SLois Curfman McInnes    The AIJ format (also called the Yale sparse matrix format or
1166ff756334SLois Curfman McInnes    compressed row storage), is fully compatible with standard Fortran 77
1167ff756334SLois Curfman McInnes    storage.  That is, the stored row and column indices begin at
1168ab693e5aSLois Curfman McInnes    one, not zero.  See the users manual for further details.
1169ff756334SLois Curfman McInnes 
1170ff756334SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
1171ff756334SLois Curfman McInnes    (possibly both).
1172ff756334SLois Curfman McInnes 
1173e0245417SLois Curfman McInnes    Storage Information:
1174e0245417SLois Curfman McInnes    For a square global matrix we define each processor's diagonal portion
1175e0245417SLois Curfman McInnes    to be its local rows and the corresponding columns (a square submatrix);
1176e0245417SLois Curfman McInnes    each processor's off-diagonal portion encompasses the remainder of the
1177e0245417SLois Curfman McInnes    local matrix (a rectangular submatrix).
1178e0245417SLois Curfman McInnes 
1179e0245417SLois Curfman McInnes    The user can specify preallocated storage for the diagonal part of
1180e0245417SLois Curfman McInnes    the local submatrix with either d_nz or d_nnz (not both). Set both
1181e0245417SLois Curfman McInnes    d_nz and d_nnz to zero for PETSc to control dynamic memory allocation.
1182e0245417SLois Curfman McInnes    Likewise, specify preallocated storage for the off-diagonal part of
1183e0245417SLois Curfman McInnes    the local submatrix with o_nz or o_nnz (not both).
1184ff756334SLois Curfman McInnes 
1185dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel
1186ff756334SLois Curfman McInnes 
1187dbd7a890SLois Curfman McInnes .seealso: MatCreate(), MatCreateSequentialAIJ(), MatSetValues()
11888a729477SBarry Smith @*/
11891eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N,
11901eb62cbbSBarry Smith                  int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat)
11918a729477SBarry Smith {
11928a729477SBarry Smith   Mat          mat;
119344a69424SLois Curfman McInnes   Mat_MPIAIJ   *aij;
11946abc6512SBarry Smith   int          ierr, i,sum[2],work[2];
11958a729477SBarry Smith   *newmat         = 0;
119644a69424SLois Curfman McInnes   PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm);
1197a5a9c739SBarry Smith   PLogObjectCreate(mat);
119878b31e54SBarry Smith   mat->data       = (void *) (aij = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(aij);
11998a729477SBarry Smith   mat->ops        = &MatOps;
120044a69424SLois Curfman McInnes   mat->destroy    = MatDestroy_MPIAIJ;
120144a69424SLois Curfman McInnes   mat->view       = MatView_MPIAIJ;
12028a729477SBarry Smith   mat->factor     = 0;
1203d6dfbf8fSBarry Smith 
120407a0e7adSLois Curfman McInnes   aij->insertmode = NOTSETVALUES;
12051eb62cbbSBarry Smith   MPI_Comm_rank(comm,&aij->mytid);
12061eb62cbbSBarry Smith   MPI_Comm_size(comm,&aij->numtids);
12071eb62cbbSBarry Smith 
1208dbd7a890SLois Curfman McInnes   if (M == PETSC_DECIDE || N == PETSC_DECIDE) {
12091eb62cbbSBarry Smith     work[0] = m; work[1] = n;
1210d6dfbf8fSBarry Smith     MPI_Allreduce((void *) work,(void *) sum,2,MPI_INT,MPI_SUM,comm );
1211dbd7a890SLois Curfman McInnes     if (M == PETSC_DECIDE) M = sum[0];
1212dbd7a890SLois Curfman McInnes     if (N == PETSC_DECIDE) N = sum[1];
12131eb62cbbSBarry Smith   }
1214dbd7a890SLois Curfman McInnes   if (m == PETSC_DECIDE)
1215dbd7a890SLois Curfman McInnes     {m = M/aij->numtids + ((M % aij->numtids) > aij->mytid);}
1216dbd7a890SLois Curfman McInnes   if (n == PETSC_DECIDE)
1217dbd7a890SLois Curfman McInnes     {n = N/aij->numtids + ((N % aij->numtids) > aij->mytid);}
12188a729477SBarry Smith   aij->m = m;
12198a729477SBarry Smith   aij->n = n;
12201eb62cbbSBarry Smith   aij->N = N;
12211eb62cbbSBarry Smith   aij->M = M;
12221eb62cbbSBarry Smith 
12231eb62cbbSBarry Smith   /* build local table of row and column ownerships */
122478b31e54SBarry Smith   aij->rowners = (int *) PETSCMALLOC(2*(aij->numtids+2)*sizeof(int));
122578b31e54SBarry Smith   CHKPTRQ(aij->rowners);
1226464493b3SBarry Smith   PLogObjectMemory(mat,2*(aij->numtids+2)*sizeof(int)+sizeof(struct _Mat)+
1227464493b3SBarry Smith                        sizeof(Mat_MPIAIJ));
12281eb62cbbSBarry Smith   aij->cowners = aij->rowners + aij->numtids + 1;
12291eb62cbbSBarry Smith   MPI_Allgather(&m,1,MPI_INT,aij->rowners+1,1,MPI_INT,comm);
12301eb62cbbSBarry Smith   aij->rowners[0] = 0;
12311eb62cbbSBarry Smith   for ( i=2; i<=aij->numtids; i++ ) {
12321eb62cbbSBarry Smith     aij->rowners[i] += aij->rowners[i-1];
12338a729477SBarry Smith   }
12341eb62cbbSBarry Smith   aij->rstart = aij->rowners[aij->mytid];
12351eb62cbbSBarry Smith   aij->rend   = aij->rowners[aij->mytid+1];
12361eb62cbbSBarry Smith   MPI_Allgather(&n,1,MPI_INT,aij->cowners+1,1,MPI_INT,comm);
12371eb62cbbSBarry Smith   aij->cowners[0] = 0;
12381eb62cbbSBarry Smith   for ( i=2; i<=aij->numtids; i++ ) {
12391eb62cbbSBarry Smith     aij->cowners[i] += aij->cowners[i-1];
12408a729477SBarry Smith   }
12411eb62cbbSBarry Smith   aij->cstart = aij->cowners[aij->mytid];
12421eb62cbbSBarry Smith   aij->cend   = aij->cowners[aij->mytid+1];
12438a729477SBarry Smith 
12448a729477SBarry Smith 
12456b5873e3SBarry Smith   ierr = MatCreateSequentialAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&aij->A);
124678b31e54SBarry Smith   CHKERRQ(ierr);
1247a5a9c739SBarry Smith   PLogObjectParent(mat,aij->A);
12486b5873e3SBarry Smith   ierr = MatCreateSequentialAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&aij->B);
124978b31e54SBarry Smith   CHKERRQ(ierr);
1250a5a9c739SBarry Smith   PLogObjectParent(mat,aij->B);
12518a729477SBarry Smith 
12521eb62cbbSBarry Smith   /* build cache for off array entries formed */
125378b31e54SBarry Smith   ierr = StashBuild_Private(&aij->stash); CHKERRQ(ierr);
12549e25ed09SBarry Smith   aij->colmap    = 0;
12559e25ed09SBarry Smith   aij->garray    = 0;
12568a729477SBarry Smith 
12571eb62cbbSBarry Smith   /* stuff used for matrix vector multiply */
12581eb62cbbSBarry Smith   aij->lvec      = 0;
12591eb62cbbSBarry Smith   aij->Mvctx     = 0;
1260d6dfbf8fSBarry Smith   aij->assembled = 0;
12618a729477SBarry Smith 
1262d6dfbf8fSBarry Smith   *newmat = mat;
1263d6dfbf8fSBarry Smith   return 0;
1264d6dfbf8fSBarry Smith }
1265c74985f6SBarry Smith 
1266ff7509f2SBarry Smith static int MatCopyPrivate_MPIAIJ(Mat matin,Mat *newmat)
1267d6dfbf8fSBarry Smith {
1268d6dfbf8fSBarry Smith   Mat        mat;
126944a69424SLois Curfman McInnes   Mat_MPIAIJ *aij,*oldmat = (Mat_MPIAIJ *) matin->data;
12702ee70a88SLois Curfman McInnes   int        ierr, len;
1271d6dfbf8fSBarry Smith   *newmat      = 0;
1272d6dfbf8fSBarry Smith 
1273bbb6d6a8SBarry Smith   if (!oldmat->assembled)
1274bbb6d6a8SBarry Smith     SETERRQ(1,"MatCopyPrivate_MPIAIJ:Cannot copy unassembled matrix");
127544a69424SLois Curfman McInnes   PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm);
1276a5a9c739SBarry Smith   PLogObjectCreate(mat);
127778b31e54SBarry Smith   mat->data       = (void *) (aij = PETSCNEW(Mat_MPIAIJ)); CHKPTRQ(aij);
1278d6dfbf8fSBarry Smith   mat->ops        = &MatOps;
127944a69424SLois Curfman McInnes   mat->destroy    = MatDestroy_MPIAIJ;
128044a69424SLois Curfman McInnes   mat->view       = MatView_MPIAIJ;
1281d6dfbf8fSBarry Smith   mat->factor     = matin->factor;
1282d6dfbf8fSBarry Smith 
1283d6dfbf8fSBarry Smith   aij->m          = oldmat->m;
1284d6dfbf8fSBarry Smith   aij->n          = oldmat->n;
1285d6dfbf8fSBarry Smith   aij->M          = oldmat->M;
1286d6dfbf8fSBarry Smith   aij->N          = oldmat->N;
1287d6dfbf8fSBarry Smith 
1288d6dfbf8fSBarry Smith   aij->assembled  = 1;
1289d6dfbf8fSBarry Smith   aij->rstart     = oldmat->rstart;
1290d6dfbf8fSBarry Smith   aij->rend       = oldmat->rend;
1291d6dfbf8fSBarry Smith   aij->cstart     = oldmat->cstart;
1292d6dfbf8fSBarry Smith   aij->cend       = oldmat->cend;
1293d6dfbf8fSBarry Smith   aij->numtids    = oldmat->numtids;
1294d6dfbf8fSBarry Smith   aij->mytid      = oldmat->mytid;
129507a0e7adSLois Curfman McInnes   aij->insertmode = NOTSETVALUES;
1296d6dfbf8fSBarry Smith 
129778b31e54SBarry Smith   aij->rowners        = (int *) PETSCMALLOC( (aij->numtids+1)*sizeof(int) );
129878b31e54SBarry Smith   CHKPTRQ(aij->rowners);
1299464493b3SBarry Smith   PLogObjectMemory(mat,(aij->numtids+1)*sizeof(int)+sizeof(struct _Mat)+
1300464493b3SBarry Smith                        sizeof(Mat_MPIAIJ));
130178b31e54SBarry Smith   PETSCMEMCPY(aij->rowners,oldmat->rowners,(aij->numtids+1)*sizeof(int));
130278b31e54SBarry Smith   ierr = StashInitialize_Private(&aij->stash); CHKERRQ(ierr);
13032ee70a88SLois Curfman McInnes   if (oldmat->colmap) {
130478b31e54SBarry Smith     aij->colmap      = (int *) PETSCMALLOC( (aij->N)*sizeof(int) );
130578b31e54SBarry Smith     CHKPTRQ(aij->colmap);
1306464493b3SBarry Smith     PLogObjectMemory(mat,(aij->N)*sizeof(int));
130778b31e54SBarry Smith     PETSCMEMCPY(aij->colmap,oldmat->colmap,(aij->N)*sizeof(int));
13082ee70a88SLois Curfman McInnes   } else aij->colmap = 0;
13092ee70a88SLois Curfman McInnes   if (oldmat->garray && (len = ((Mat_AIJ *) (oldmat->B->data))->n)) {
131078b31e54SBarry Smith     aij->garray      = (int *) PETSCMALLOC(len*sizeof(int) ); CHKPTRQ(aij->garray);
1311464493b3SBarry Smith     PLogObjectMemory(mat,len*sizeof(int));
131278b31e54SBarry Smith     PETSCMEMCPY(aij->garray,oldmat->garray,len*sizeof(int));
13132ee70a88SLois Curfman McInnes   } else aij->garray = 0;
1314d6dfbf8fSBarry Smith 
131578b31e54SBarry Smith   ierr =  VecDuplicate(oldmat->lvec,&aij->lvec); CHKERRQ(ierr);
1316a5a9c739SBarry Smith   PLogObjectParent(mat,aij->lvec);
131778b31e54SBarry Smith   ierr =  VecScatterCtxCopy(oldmat->Mvctx,&aij->Mvctx); CHKERRQ(ierr);
1318a5a9c739SBarry Smith   PLogObjectParent(mat,aij->Mvctx);
131978b31e54SBarry Smith   ierr =  MatConvert(oldmat->A,MATSAME,&aij->A); CHKERRQ(ierr);
1320a5a9c739SBarry Smith   PLogObjectParent(mat,aij->A);
132178b31e54SBarry Smith   ierr =  MatConvert(oldmat->B,MATSAME,&aij->B); CHKERRQ(ierr);
1322a5a9c739SBarry Smith   PLogObjectParent(mat,aij->B);
13238a729477SBarry Smith   *newmat = mat;
13248a729477SBarry Smith   return 0;
13258a729477SBarry Smith }
1326