1cb512458SBarry Smith #ifndef lint 2*39e00950SLois Curfman McInnes static char vcid[] = "$Id: mpiaij.c,v 1.15 1995/03/23 23:12:56 curfman Exp $"; 3cb512458SBarry Smith #endif 48a729477SBarry Smith 51eb62cbbSBarry Smith #include "mpiaij.h" 68a729477SBarry Smith #include "vec/vecimpl.h" 7d6dfbf8fSBarry Smith #include "inline/spops.h" 88a729477SBarry Smith 91eb62cbbSBarry Smith #define CHUNCKSIZE 100 101eb62cbbSBarry Smith /* 111eb62cbbSBarry Smith This is a simple minded stash. Do a linear search to determine if 121eb62cbbSBarry Smith in stash, if not add to end. 131eb62cbbSBarry Smith */ 141eb62cbbSBarry Smith static int StashValues(Stash *stash,int row,int n, int *idxn, 151eb62cbbSBarry Smith Scalar *values,InsertMode addv) 168a729477SBarry Smith { 171eb62cbbSBarry Smith int i,j,N = stash->n,found,*n_idx, *n_idy; 181eb62cbbSBarry Smith Scalar val,*n_array; 198a729477SBarry Smith 201eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 211eb62cbbSBarry Smith found = 0; 221eb62cbbSBarry Smith val = *values++; 238a729477SBarry Smith for ( j=0; j<N; j++ ) { 241eb62cbbSBarry Smith if ( stash->idx[j] == row && stash->idy[j] == idxn[i]) { 251eb62cbbSBarry Smith /* found a match */ 261eb62cbbSBarry Smith if (addv == AddValues) stash->array[j] += val; 271eb62cbbSBarry Smith else stash->array[j] = val; 281eb62cbbSBarry Smith found = 1; 298a729477SBarry Smith break; 308a729477SBarry Smith } 318a729477SBarry Smith } 321eb62cbbSBarry Smith if (!found) { /* not found so add to end */ 331eb62cbbSBarry Smith if ( stash->n == stash->nmax ) { 341eb62cbbSBarry Smith /* allocate a larger stash */ 351eb62cbbSBarry Smith n_array = (Scalar *) MALLOC( (stash->nmax + CHUNCKSIZE)*( 361eb62cbbSBarry Smith 2*sizeof(int) + sizeof(Scalar))); 371eb62cbbSBarry Smith CHKPTR(n_array); 381eb62cbbSBarry Smith n_idx = (int *) (n_array + stash->nmax + CHUNCKSIZE); 391eb62cbbSBarry Smith n_idy = (int *) (n_idx + stash->nmax + CHUNCKSIZE); 401eb62cbbSBarry Smith MEMCPY(n_array,stash->array,stash->nmax*sizeof(Scalar)); 411eb62cbbSBarry Smith MEMCPY(n_idx,stash->idx,stash->nmax*sizeof(int)); 421eb62cbbSBarry Smith MEMCPY(n_idy,stash->idy,stash->nmax*sizeof(int)); 431eb62cbbSBarry Smith if (stash->array) FREE(stash->array); 441eb62cbbSBarry Smith stash->array = n_array; stash->idx = n_idx; stash->idy = n_idy; 451eb62cbbSBarry Smith stash->nmax += CHUNCKSIZE; 461eb62cbbSBarry Smith } 471eb62cbbSBarry Smith stash->array[stash->n] = val; 481eb62cbbSBarry Smith stash->idx[stash->n] = row; 491eb62cbbSBarry Smith stash->idy[stash->n++] = idxn[i]; 501eb62cbbSBarry Smith } 518a729477SBarry Smith } 528a729477SBarry Smith return 0; 538a729477SBarry Smith } 548a729477SBarry Smith 559e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column 569e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 579e25ed09SBarry Smith storage of the matrix. This is done in a non scable way since the 589e25ed09SBarry Smith length of colmap equals the global matrix length. 599e25ed09SBarry Smith */ 609e25ed09SBarry Smith static int CreateColmap(Mat mat) 619e25ed09SBarry Smith { 6244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 6344a69424SLois Curfman McInnes Mat_AIJ *B = (Mat_AIJ*) aij->B->data; 649e25ed09SBarry Smith int n = B->n,i; 659e25ed09SBarry Smith aij->colmap = (int *) MALLOC( aij->N*sizeof(int) ); CHKPTR(aij->colmap); 66*39e00950SLois Curfman McInnes aij->invcolmap = (int *) MALLOC( aij->N*sizeof(int) ); CHKPTR(aij->invcolmap); 679e25ed09SBarry Smith MEMSET(aij->colmap,0,aij->N*sizeof(int)); 68*39e00950SLois Curfman McInnes MEMSET(aij->invcolmap,0,aij->N*sizeof(int)); 699e25ed09SBarry Smith for ( i=0; i<n; i++ ) { 709e25ed09SBarry Smith aij->colmap[aij->garray[i]] = i+1; 71*39e00950SLois Curfman McInnes aij->invcolmap[i+1] = aij->garray[i]; 729e25ed09SBarry Smith } 739e25ed09SBarry Smith return 0; 749e25ed09SBarry Smith } 759e25ed09SBarry Smith 7644a69424SLois Curfman McInnes static int MatInsertValues_MPIAIJ(Mat mat,int m,int *idxm,int n, 771eb62cbbSBarry Smith int *idxn,Scalar *v,InsertMode addv) 788a729477SBarry Smith { 7944a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 801eb62cbbSBarry Smith int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 811eb62cbbSBarry Smith int cstart = aij->cstart, cend = aij->cend,row,col; 828a729477SBarry Smith 831eb62cbbSBarry Smith if (aij->insertmode != NotSetValues && aij->insertmode != addv) { 841eb62cbbSBarry Smith SETERR(1,"You cannot mix inserts and adds"); 858a729477SBarry Smith } 861eb62cbbSBarry Smith aij->insertmode = addv; 878a729477SBarry Smith for ( i=0; i<m; i++ ) { 88da3a660dSBarry Smith if (idxm[i] < 0) SETERR(1,"Negative row index"); 89da3a660dSBarry Smith if (idxm[i] >= aij->M) SETERR(1,"Row index too large"); 901eb62cbbSBarry Smith if (idxm[i] >= rstart && idxm[i] < rend) { 911eb62cbbSBarry Smith row = idxm[i] - rstart; 921eb62cbbSBarry Smith for ( j=0; j<n; j++ ) { 93da3a660dSBarry Smith if (idxn[j] < 0) SETERR(1,"Negative column index"); 94da3a660dSBarry Smith if (idxn[j] >= aij->N) SETERR(1,"Column index too large"); 951eb62cbbSBarry Smith if (idxn[j] >= cstart && idxn[j] < cend){ 961eb62cbbSBarry Smith col = idxn[j] - cstart; 971eb62cbbSBarry Smith ierr = MatSetValues(aij->A,1,&row,1,&col,v+i*n+j,addv);CHKERR(ierr); 981eb62cbbSBarry Smith } 991eb62cbbSBarry Smith else { 100d6dfbf8fSBarry Smith if (aij->assembled) { 1019e25ed09SBarry Smith if (!aij->colmap) {ierr = CreateColmap(mat); CHKERR(ierr);} 1029e25ed09SBarry Smith col = aij->colmap[idxn[j]] - 1; 1039e25ed09SBarry Smith if (col < 0) { 1049e25ed09SBarry Smith SETERR(1,"Cannot insert new off diagonal block nonzero in\ 1059e25ed09SBarry Smith already\ 106d6dfbf8fSBarry Smith assembled matrix. Contact petsc-maint@mcs.anl.gov\ 107d6dfbf8fSBarry Smith if your need this feature"); 108d6dfbf8fSBarry Smith } 1099e25ed09SBarry Smith } 1109e25ed09SBarry Smith else col = idxn[j]; 1111eb62cbbSBarry Smith ierr = MatSetValues(aij->B,1,&row,1,&col,v+i*n+j,addv);CHKERR(ierr); 1121eb62cbbSBarry Smith } 1131eb62cbbSBarry Smith } 1141eb62cbbSBarry Smith } 1151eb62cbbSBarry Smith else { 1161eb62cbbSBarry Smith ierr = StashValues(&aij->stash,idxm[i],n,idxn,v+i*n,addv);CHKERR(ierr); 1171eb62cbbSBarry Smith } 1188a729477SBarry Smith } 1198a729477SBarry Smith return 0; 1208a729477SBarry Smith } 1218a729477SBarry Smith 1228a729477SBarry Smith /* 1231eb62cbbSBarry Smith the assembly code is alot like the code for vectors, we should 1241eb62cbbSBarry Smith sometime derive a single assembly code that can be used for 1251eb62cbbSBarry Smith either case. 1268a729477SBarry Smith */ 1278a729477SBarry Smith 12844a69424SLois Curfman McInnes static int MatBeginAssemble_MPIAIJ(Mat mat) 1298a729477SBarry Smith { 13044a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 131d6dfbf8fSBarry Smith MPI_Comm comm = mat->comm; 1326abc6512SBarry Smith int numtids = aij->numtids, *owners = aij->rowners; 1331eb62cbbSBarry Smith int mytid = aij->mytid; 1341eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 1356abc6512SBarry Smith int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 1361eb62cbbSBarry Smith int tag = 50, *owner,*starts,count; 1371eb62cbbSBarry Smith InsertMode addv; 1381eb62cbbSBarry Smith Scalar *rvalues,*svalues; 1391eb62cbbSBarry Smith 1401eb62cbbSBarry Smith /* make sure all processors are either in INSERTMODE or ADDMODE */ 14128988994SBarry Smith MPI_Allreduce((void *) &aij->insertmode,(void *) &addv,1,MPI_INT, 1421eb62cbbSBarry Smith MPI_BOR,comm); 1431eb62cbbSBarry Smith if (addv == (AddValues|InsertValues)) { 1441eb62cbbSBarry Smith SETERR(1,"Some processors have inserted while others have added"); 1451eb62cbbSBarry Smith } 1461eb62cbbSBarry Smith aij->insertmode = addv; /* in case this processor had no cache */ 1471eb62cbbSBarry Smith 1481eb62cbbSBarry Smith /* first count number of contributors to each processor */ 1491eb62cbbSBarry Smith nprocs = (int *) MALLOC( 2*numtids*sizeof(int) ); CHKPTR(nprocs); 1501eb62cbbSBarry Smith MEMSET(nprocs,0,2*numtids*sizeof(int)); procs = nprocs + numtids; 1511eb62cbbSBarry Smith owner = (int *) MALLOC( (aij->stash.n+1)*sizeof(int) ); CHKPTR(owner); 1521eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1531eb62cbbSBarry Smith idx = aij->stash.idx[i]; 1541eb62cbbSBarry Smith for ( j=0; j<numtids; j++ ) { 1551eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 1561eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; break; 1578a729477SBarry Smith } 1588a729477SBarry Smith } 1598a729477SBarry Smith } 1601eb62cbbSBarry Smith nsends = 0; for ( i=0; i<numtids; i++ ) { nsends += procs[i];} 1611eb62cbbSBarry Smith 1621eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 1631eb62cbbSBarry Smith work = (int *) MALLOC( numtids*sizeof(int) ); CHKPTR(work); 1641eb62cbbSBarry Smith MPI_Allreduce((void *) procs,(void *) work,numtids,MPI_INT,MPI_SUM,comm); 1651eb62cbbSBarry Smith nreceives = work[mytid]; 1661eb62cbbSBarry Smith MPI_Allreduce((void *) nprocs,(void *) work,numtids,MPI_INT,MPI_MAX,comm); 1671eb62cbbSBarry Smith nmax = work[mytid]; 1681eb62cbbSBarry Smith FREE(work); 1691eb62cbbSBarry Smith 1701eb62cbbSBarry Smith /* post receives: 1711eb62cbbSBarry Smith 1) each message will consist of ordered pairs 1721eb62cbbSBarry Smith (global index,value) we store the global index as a double 173d6dfbf8fSBarry Smith to simplify the message passing. 1741eb62cbbSBarry Smith 2) since we don't know how long each individual message is we 1751eb62cbbSBarry Smith allocate the largest needed buffer for each receive. Potentially 1761eb62cbbSBarry Smith this is a lot of wasted space. 1771eb62cbbSBarry Smith 1781eb62cbbSBarry Smith 1791eb62cbbSBarry Smith This could be done better. 1801eb62cbbSBarry Smith */ 18128988994SBarry Smith rvalues = (Scalar *) MALLOC(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 1821eb62cbbSBarry Smith CHKPTR(rvalues); 1831eb62cbbSBarry Smith recv_waits = (MPI_Request *) MALLOC((nreceives+1)*sizeof(MPI_Request)); 1841eb62cbbSBarry Smith CHKPTR(recv_waits); 1851eb62cbbSBarry Smith for ( i=0; i<nreceives; i++ ) { 1861eb62cbbSBarry Smith MPI_Irecv((void *)(rvalues+3*nmax*i),3*nmax,MPI_SCALAR,MPI_ANY_SOURCE,tag, 1871eb62cbbSBarry Smith comm,recv_waits+i); 1881eb62cbbSBarry Smith } 1891eb62cbbSBarry Smith 1901eb62cbbSBarry Smith /* do sends: 1911eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 1921eb62cbbSBarry Smith the ith processor 1931eb62cbbSBarry Smith */ 1941eb62cbbSBarry Smith svalues = (Scalar *) MALLOC( 3*(aij->stash.n+1)*sizeof(Scalar) ); 1951eb62cbbSBarry Smith CHKPTR(svalues); 1961eb62cbbSBarry Smith send_waits = (MPI_Request *) MALLOC( (nsends+1)*sizeof(MPI_Request)); 1971eb62cbbSBarry Smith CHKPTR(send_waits); 1981eb62cbbSBarry Smith starts = (int *) MALLOC( numtids*sizeof(int) ); CHKPTR(starts); 1991eb62cbbSBarry Smith starts[0] = 0; 2001eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 2011eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 2021eb62cbbSBarry Smith svalues[3*starts[owner[i]]] = (Scalar) aij->stash.idx[i]; 2031eb62cbbSBarry Smith svalues[3*starts[owner[i]]+1] = (Scalar) aij->stash.idy[i]; 2041eb62cbbSBarry Smith svalues[3*(starts[owner[i]]++)+2] = aij->stash.array[i]; 2051eb62cbbSBarry Smith } 2061eb62cbbSBarry Smith FREE(owner); 2071eb62cbbSBarry Smith starts[0] = 0; 2081eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 2091eb62cbbSBarry Smith count = 0; 2101eb62cbbSBarry Smith for ( i=0; i<numtids; i++ ) { 2111eb62cbbSBarry Smith if (procs[i]) { 2121eb62cbbSBarry Smith MPI_Isend((void*)(svalues+3*starts[i]),3*nprocs[i],MPI_SCALAR,i,tag, 2131eb62cbbSBarry Smith comm,send_waits+count++); 2141eb62cbbSBarry Smith } 2151eb62cbbSBarry Smith } 2161eb62cbbSBarry Smith FREE(starts); FREE(nprocs); 2171eb62cbbSBarry Smith 2181eb62cbbSBarry Smith /* Free cache space */ 2191eb62cbbSBarry Smith aij->stash.nmax = aij->stash.n = 0; 2201eb62cbbSBarry Smith if (aij->stash.array){ FREE(aij->stash.array); aij->stash.array = 0;} 2211eb62cbbSBarry Smith 2221eb62cbbSBarry Smith aij->svalues = svalues; aij->rvalues = rvalues; 2231eb62cbbSBarry Smith aij->nsends = nsends; aij->nrecvs = nreceives; 2241eb62cbbSBarry Smith aij->send_waits = send_waits; aij->recv_waits = recv_waits; 2251eb62cbbSBarry Smith aij->rmax = nmax; 2261eb62cbbSBarry Smith 2271eb62cbbSBarry Smith return 0; 2281eb62cbbSBarry Smith } 22944a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat); 2301eb62cbbSBarry Smith 23144a69424SLois Curfman McInnes static int MatEndAssemble_MPIAIJ(Mat mat) 2321eb62cbbSBarry Smith { 2331eb62cbbSBarry Smith int ierr; 23444a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 2351eb62cbbSBarry Smith 2361eb62cbbSBarry Smith MPI_Status *send_status,recv_status; 2376abc6512SBarry Smith int imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n; 2381eb62cbbSBarry Smith int row,col; 2391eb62cbbSBarry Smith Scalar *values,val; 2401eb62cbbSBarry Smith InsertMode addv = aij->insertmode; 2411eb62cbbSBarry Smith 2421eb62cbbSBarry Smith /* wait on receives */ 2431eb62cbbSBarry Smith while (count) { 244d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status); 2451eb62cbbSBarry Smith /* unpack receives into our local space */ 246d6dfbf8fSBarry Smith values = aij->rvalues + 3*imdex*aij->rmax; 2471eb62cbbSBarry Smith MPI_Get_count(&recv_status,MPI_SCALAR,&n); 2481eb62cbbSBarry Smith n = n/3; 2491eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 2501eb62cbbSBarry Smith row = (int) PETSCREAL(values[3*i]) - aij->rstart; 2511eb62cbbSBarry Smith col = (int) PETSCREAL(values[3*i+1]); 2521eb62cbbSBarry Smith val = values[3*i+2]; 2531eb62cbbSBarry Smith if (col >= aij->cstart && col < aij->cend) { 2541eb62cbbSBarry Smith col -= aij->cstart; 2551eb62cbbSBarry Smith MatSetValues(aij->A,1,&row,1,&col,&val,addv); 2561eb62cbbSBarry Smith } 2571eb62cbbSBarry Smith else { 258d6dfbf8fSBarry Smith if (aij->assembled) { 2599e25ed09SBarry Smith if (!aij->colmap) {ierr = CreateColmap(mat); CHKERR(ierr);} 2609e25ed09SBarry Smith col = aij->colmap[col] - 1; 2619e25ed09SBarry Smith if (col < 0) { 2629e25ed09SBarry Smith SETERR(1,"Cannot insert new off diagonal block nonzero in\ 2639e25ed09SBarry Smith already\ 264d6dfbf8fSBarry Smith assembled matrix. Contact petsc-maint@mcs.anl.gov\ 265d6dfbf8fSBarry Smith if your need this feature"); 266d6dfbf8fSBarry Smith } 2679e25ed09SBarry Smith } 2681eb62cbbSBarry Smith MatSetValues(aij->B,1,&row,1,&col,&val,addv); 2691eb62cbbSBarry Smith } 2701eb62cbbSBarry Smith } 2711eb62cbbSBarry Smith count--; 2721eb62cbbSBarry Smith } 2731eb62cbbSBarry Smith FREE(aij->recv_waits); FREE(aij->rvalues); 2741eb62cbbSBarry Smith 2751eb62cbbSBarry Smith /* wait on sends */ 2761eb62cbbSBarry Smith if (aij->nsends) { 2771eb62cbbSBarry Smith send_status = (MPI_Status *) MALLOC( aij->nsends*sizeof(MPI_Status) ); 2781eb62cbbSBarry Smith CHKPTR(send_status); 2791eb62cbbSBarry Smith MPI_Waitall(aij->nsends,aij->send_waits,send_status); 2801eb62cbbSBarry Smith FREE(send_status); 2811eb62cbbSBarry Smith } 2821eb62cbbSBarry Smith FREE(aij->send_waits); FREE(aij->svalues); 2831eb62cbbSBarry Smith 2841eb62cbbSBarry Smith aij->insertmode = NotSetValues; 2851eb62cbbSBarry Smith ierr = MatBeginAssembly(aij->A); CHKERR(ierr); 2861eb62cbbSBarry Smith ierr = MatEndAssembly(aij->A); CHKERR(ierr); 2871eb62cbbSBarry Smith 2889e25ed09SBarry Smith if (!aij->assembled) { 289d3c9fed9SLois Curfman McInnes ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERR(ierr); 2909e25ed09SBarry Smith } 2911eb62cbbSBarry Smith ierr = MatBeginAssembly(aij->B); CHKERR(ierr); 2921eb62cbbSBarry Smith ierr = MatEndAssembly(aij->B); CHKERR(ierr); 293d6dfbf8fSBarry Smith 294d6dfbf8fSBarry Smith aij->assembled = 1; 2958a729477SBarry Smith return 0; 2968a729477SBarry Smith } 2978a729477SBarry Smith 29844a69424SLois Curfman McInnes static int MatZero_MPIAIJ(Mat A) 2991eb62cbbSBarry Smith { 30044a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 3011eb62cbbSBarry Smith 3021eb62cbbSBarry Smith MatZeroEntries(l->A); MatZeroEntries(l->B); 3031eb62cbbSBarry Smith return 0; 3041eb62cbbSBarry Smith } 3051eb62cbbSBarry Smith 3061eb62cbbSBarry Smith /* again this uses the same basic stratagy as in the assembly and 3071eb62cbbSBarry Smith scatter create routines, we should try to do it systemamatically 3081eb62cbbSBarry Smith if we can figure out the proper level of generality. */ 3091eb62cbbSBarry Smith 3101eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the 3111eb62cbbSBarry Smith matrix is square and the column and row owerships are identical. 3121eb62cbbSBarry Smith This is a BUG. The only way to fix it seems to be to access 3131eb62cbbSBarry Smith aij->A and aij->B directly and not through the MatZeroRows() 3141eb62cbbSBarry Smith routine. 3151eb62cbbSBarry Smith */ 31644a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag) 3171eb62cbbSBarry Smith { 31844a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 3191eb62cbbSBarry Smith int i,ierr,N, *rows,*owners = l->rowners,numtids = l->numtids; 3206abc6512SBarry Smith int *procs,*nprocs,j,found,idx,nsends,*work; 3211eb62cbbSBarry Smith int nmax,*svalues,*starts,*owner,nrecvs,mytid = l->mytid; 3226abc6512SBarry Smith int *rvalues,tag = 67,count,base,slen,n,*source; 323d6dfbf8fSBarry Smith int *lens,imdex,*lrows,*values; 324d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 3251eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 3261eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 3271eb62cbbSBarry Smith IS istmp; 3281eb62cbbSBarry Smith 32944a69424SLois Curfman McInnes if (!l->assembled) SETERR(1,"MatZeroRows_MPIAIJ: must assemble matrix first"); 3301eb62cbbSBarry Smith ierr = ISGetLocalSize(is,&N); CHKERR(ierr); 3311eb62cbbSBarry Smith ierr = ISGetIndices(is,&rows); CHKERR(ierr); 3321eb62cbbSBarry Smith 3331eb62cbbSBarry Smith /* first count number of contributors to each processor */ 3341eb62cbbSBarry Smith nprocs = (int *) MALLOC( 2*numtids*sizeof(int) ); CHKPTR(nprocs); 3351eb62cbbSBarry Smith MEMSET(nprocs,0,2*numtids*sizeof(int)); procs = nprocs + numtids; 3361eb62cbbSBarry Smith owner = (int *) MALLOC((N+1)*sizeof(int)); CHKPTR(owner); /* see note*/ 3371eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3381eb62cbbSBarry Smith idx = rows[i]; 3391eb62cbbSBarry Smith found = 0; 3401eb62cbbSBarry Smith for ( j=0; j<numtids; j++ ) { 3411eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 3421eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 3431eb62cbbSBarry Smith } 3441eb62cbbSBarry Smith } 345d6dfbf8fSBarry Smith if (!found) SETERR(1,"Imdex out of range"); 3461eb62cbbSBarry Smith } 3471eb62cbbSBarry Smith nsends = 0; for ( i=0; i<numtids; i++ ) { nsends += procs[i];} 3481eb62cbbSBarry Smith 3491eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 3501eb62cbbSBarry Smith work = (int *) MALLOC( numtids*sizeof(int) ); CHKPTR(work); 3511eb62cbbSBarry Smith MPI_Allreduce((void *) procs,(void *) work,numtids,MPI_INT,MPI_SUM,comm); 3521eb62cbbSBarry Smith nrecvs = work[mytid]; 3531eb62cbbSBarry Smith MPI_Allreduce((void *) nprocs,(void *) work,numtids,MPI_INT,MPI_MAX,comm); 3541eb62cbbSBarry Smith nmax = work[mytid]; 3551eb62cbbSBarry Smith FREE(work); 3561eb62cbbSBarry Smith 3571eb62cbbSBarry Smith /* post receives: */ 35828988994SBarry Smith rvalues = (int *) MALLOC((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 3591eb62cbbSBarry Smith CHKPTR(rvalues); 3601eb62cbbSBarry Smith recv_waits = (MPI_Request *) MALLOC((nrecvs+1)*sizeof(MPI_Request)); 3611eb62cbbSBarry Smith CHKPTR(recv_waits); 3621eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 3631eb62cbbSBarry Smith MPI_Irecv((void *)(rvalues+nmax*i),nmax,MPI_INT,MPI_ANY_SOURCE,tag, 3641eb62cbbSBarry Smith comm,recv_waits+i); 3651eb62cbbSBarry Smith } 3661eb62cbbSBarry Smith 3671eb62cbbSBarry Smith /* do sends: 3681eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 3691eb62cbbSBarry Smith the ith processor 3701eb62cbbSBarry Smith */ 3711eb62cbbSBarry Smith svalues = (int *) MALLOC( (N+1)*sizeof(int) ); CHKPTR(svalues); 3721eb62cbbSBarry Smith send_waits = (MPI_Request *) MALLOC( (nsends+1)*sizeof(MPI_Request)); 3731eb62cbbSBarry Smith CHKPTR(send_waits); 3741eb62cbbSBarry Smith starts = (int *) MALLOC( (numtids+1)*sizeof(int) ); CHKPTR(starts); 3751eb62cbbSBarry Smith starts[0] = 0; 3761eb62cbbSBarry Smith for ( i=1; i<numtids; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3771eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3781eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 3791eb62cbbSBarry Smith } 3801eb62cbbSBarry Smith ISRestoreIndices(is,&rows); 3811eb62cbbSBarry Smith 3821eb62cbbSBarry Smith starts[0] = 0; 3831eb62cbbSBarry Smith for ( i=1; i<numtids+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3841eb62cbbSBarry Smith count = 0; 3851eb62cbbSBarry Smith for ( i=0; i<numtids; i++ ) { 3861eb62cbbSBarry Smith if (procs[i]) { 3871eb62cbbSBarry Smith MPI_Isend((void*)(svalues+starts[i]),nprocs[i],MPI_INT,i,tag, 3881eb62cbbSBarry Smith comm,send_waits+count++); 3891eb62cbbSBarry Smith } 3901eb62cbbSBarry Smith } 3911eb62cbbSBarry Smith FREE(starts); 3921eb62cbbSBarry Smith 3931eb62cbbSBarry Smith base = owners[mytid]; 3941eb62cbbSBarry Smith 3951eb62cbbSBarry Smith /* wait on receives */ 3961eb62cbbSBarry Smith lens = (int *) MALLOC( 2*(nrecvs+1)*sizeof(int) ); CHKPTR(lens); 3971eb62cbbSBarry Smith source = lens + nrecvs; 3981eb62cbbSBarry Smith count = nrecvs; slen = 0; 3991eb62cbbSBarry Smith while (count) { 400d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 4011eb62cbbSBarry Smith /* unpack receives into our local space */ 4021eb62cbbSBarry Smith MPI_Get_count(&recv_status,MPI_INT,&n); 403d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 404d6dfbf8fSBarry Smith lens[imdex] = n; 4051eb62cbbSBarry Smith slen += n; 4061eb62cbbSBarry Smith count--; 4071eb62cbbSBarry Smith } 4081eb62cbbSBarry Smith FREE(recv_waits); 4091eb62cbbSBarry Smith 4101eb62cbbSBarry Smith /* move the data into the send scatter */ 4111eb62cbbSBarry Smith lrows = (int *) MALLOC( slen*sizeof(int) ); CHKPTR(lrows); 4121eb62cbbSBarry Smith count = 0; 4131eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 4141eb62cbbSBarry Smith values = rvalues + i*nmax; 4151eb62cbbSBarry Smith for ( j=0; j<lens[i]; j++ ) { 4161eb62cbbSBarry Smith lrows[count++] = values[j] - base; 4171eb62cbbSBarry Smith } 4181eb62cbbSBarry Smith } 4191eb62cbbSBarry Smith FREE(rvalues); FREE(lens); 4201eb62cbbSBarry Smith FREE(owner); FREE(nprocs); 4211eb62cbbSBarry Smith 4221eb62cbbSBarry Smith /* actually zap the local rows */ 4231eb62cbbSBarry Smith ierr = ISCreateSequential(slen,lrows,&istmp); CHKERR(ierr); FREE(lrows); 4241eb62cbbSBarry Smith ierr = MatZeroRows(l->A,istmp,diag); CHKERR(ierr); 4251eb62cbbSBarry Smith ierr = MatZeroRows(l->B,istmp,0); CHKERR(ierr); 4261eb62cbbSBarry Smith ierr = ISDestroy(istmp); CHKERR(ierr); 4271eb62cbbSBarry Smith 4281eb62cbbSBarry Smith /* wait on sends */ 4291eb62cbbSBarry Smith if (nsends) { 4301eb62cbbSBarry Smith send_status = (MPI_Status *) MALLOC( nsends*sizeof(MPI_Status) ); 4311eb62cbbSBarry Smith CHKPTR(send_status); 4321eb62cbbSBarry Smith MPI_Waitall(nsends,send_waits,send_status); 4331eb62cbbSBarry Smith FREE(send_status); 4341eb62cbbSBarry Smith } 4351eb62cbbSBarry Smith FREE(send_waits); FREE(svalues); 4361eb62cbbSBarry Smith 4371eb62cbbSBarry Smith 4381eb62cbbSBarry Smith return 0; 4391eb62cbbSBarry Smith } 4401eb62cbbSBarry Smith 44144a69424SLois Curfman McInnes static int MatMult_MPIAIJ(Mat aijin,Vec xx,Vec yy) 4421eb62cbbSBarry Smith { 44344a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 4441eb62cbbSBarry Smith int ierr; 44544a69424SLois Curfman McInnes if (!aij->assembled) SETERR(1,"MatMult_MPIAIJ: must assemble matrix first"); 446d6dfbf8fSBarry Smith ierr = VecScatterBegin(xx,0,aij->lvec,0,InsertValues,ScatterAll,aij->Mvctx); 4471eb62cbbSBarry Smith CHKERR(ierr); 4481eb62cbbSBarry Smith ierr = MatMult(aij->A,xx,yy); CHKERR(ierr); 449d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,aij->lvec,0,InsertValues,ScatterAll,aij->Mvctx); 450d6dfbf8fSBarry Smith CHKERR(ierr); 4511eb62cbbSBarry Smith ierr = MatMultAdd(aij->B,aij->lvec,yy,yy); CHKERR(ierr); 4521eb62cbbSBarry Smith return 0; 4531eb62cbbSBarry Smith } 4541eb62cbbSBarry Smith 45544a69424SLois Curfman McInnes static int MatMultAdd_MPIAIJ(Mat aijin,Vec xx,Vec yy,Vec zz) 456da3a660dSBarry Smith { 45744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 458da3a660dSBarry Smith int ierr; 45944a69424SLois Curfman McInnes if (!aij->assembled) SETERR(1,"MatMult_MPIAIJ: must assemble matrix first"); 460da3a660dSBarry Smith ierr = VecScatterBegin(xx,0,aij->lvec,0,InsertValues,ScatterAll,aij->Mvctx); 461da3a660dSBarry Smith CHKERR(ierr); 462da3a660dSBarry Smith ierr = MatMultAdd(aij->A,xx,yy,zz); CHKERR(ierr); 463da3a660dSBarry Smith ierr = VecScatterEnd(xx,0,aij->lvec,0,InsertValues,ScatterAll,aij->Mvctx); 464da3a660dSBarry Smith CHKERR(ierr); 465da3a660dSBarry Smith ierr = MatMultAdd(aij->B,aij->lvec,zz,zz); CHKERR(ierr); 466da3a660dSBarry Smith return 0; 467da3a660dSBarry Smith } 468da3a660dSBarry Smith 46944a69424SLois Curfman McInnes static int MatMultTrans_MPIAIJ(Mat aijin,Vec xx,Vec yy) 470da3a660dSBarry Smith { 47144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 472da3a660dSBarry Smith int ierr; 473da3a660dSBarry Smith 47444a69424SLois Curfman McInnes if (!aij->assembled) 47544a69424SLois Curfman McInnes SETERR(1,"MatMulTrans_MPIAIJ: must assemble matrix first"); 476da3a660dSBarry Smith /* do nondiagonal part */ 477da3a660dSBarry Smith ierr = MatMultTrans(aij->B,xx,aij->lvec); CHKERR(ierr); 478da3a660dSBarry Smith /* send it on its way */ 479da3a660dSBarry Smith ierr = VecScatterBegin(aij->lvec,0,yy,0,AddValues, 480da3a660dSBarry Smith ScatterAll|ScatterReverse,aij->Mvctx); CHKERR(ierr); 481da3a660dSBarry Smith /* do local part */ 482da3a660dSBarry Smith ierr = MatMultTrans(aij->A,xx,yy); CHKERR(ierr); 483da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 484da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 485da3a660dSBarry Smith /* but is not perhaps always true. */ 486da3a660dSBarry Smith ierr = VecScatterEnd(aij->lvec,0,yy,0,AddValues,ScatterAll|ScatterReverse, 487da3a660dSBarry Smith aij->Mvctx); CHKERR(ierr); 488da3a660dSBarry Smith return 0; 489da3a660dSBarry Smith } 490da3a660dSBarry Smith 49144a69424SLois Curfman McInnes static int MatMultTransAdd_MPIAIJ(Mat aijin,Vec xx,Vec yy,Vec zz) 492da3a660dSBarry Smith { 49344a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 494da3a660dSBarry Smith int ierr; 495da3a660dSBarry Smith 49644a69424SLois Curfman McInnes if (!aij->assembled) 49744a69424SLois Curfman McInnes SETERR(1,"MatMulTransAdd_MPIAIJ: must assemble matrix first"); 498da3a660dSBarry Smith /* do nondiagonal part */ 499da3a660dSBarry Smith ierr = MatMultTrans(aij->B,xx,aij->lvec); CHKERR(ierr); 500da3a660dSBarry Smith /* send it on its way */ 501da3a660dSBarry Smith ierr = VecScatterBegin(aij->lvec,0,zz,0,AddValues, 502da3a660dSBarry Smith ScatterAll|ScatterReverse,aij->Mvctx); CHKERR(ierr); 503da3a660dSBarry Smith /* do local part */ 504da3a660dSBarry Smith ierr = MatMultTransAdd(aij->A,xx,yy,zz); CHKERR(ierr); 505da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 506da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 507da3a660dSBarry Smith /* but is not perhaps always true. */ 508da3a660dSBarry Smith ierr = VecScatterEnd(aij->lvec,0,zz,0,AddValues,ScatterAll|ScatterReverse, 509da3a660dSBarry Smith aij->Mvctx); CHKERR(ierr); 510da3a660dSBarry Smith return 0; 511da3a660dSBarry Smith } 512da3a660dSBarry Smith 5131eb62cbbSBarry Smith /* 5141eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 5151eb62cbbSBarry Smith diagonal block 5161eb62cbbSBarry Smith */ 51744a69424SLois Curfman McInnes static int MatGetDiag_MPIAIJ(Mat Ain,Vec v) 5181eb62cbbSBarry Smith { 51944a69424SLois Curfman McInnes Mat_MPIAIJ *A = (Mat_MPIAIJ *) Ain->data; 52044a69424SLois Curfman McInnes if (!A->assembled) SETERR(1,"MatGetDiag_MPIAIJ: must assemble matrix first"); 5211eb62cbbSBarry Smith return MatGetDiagonal(A->A,v); 5221eb62cbbSBarry Smith } 5231eb62cbbSBarry Smith 52444a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj) 5251eb62cbbSBarry Smith { 5261eb62cbbSBarry Smith Mat mat = (Mat) obj; 52744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 5281eb62cbbSBarry Smith int ierr; 529a5a9c739SBarry Smith #if defined(PETSC_LOG) 530a5a9c739SBarry Smith PLogObjectState(obj,"Rows %d Cols %d",aij->M,aij->N); 531a5a9c739SBarry Smith #endif 5321eb62cbbSBarry Smith FREE(aij->rowners); 5331eb62cbbSBarry Smith ierr = MatDestroy(aij->A); CHKERR(ierr); 5341eb62cbbSBarry Smith ierr = MatDestroy(aij->B); CHKERR(ierr); 5359e25ed09SBarry Smith if (aij->colmap) FREE(aij->colmap); 5369e25ed09SBarry Smith if (aij->garray) FREE(aij->garray); 5371eb62cbbSBarry Smith if (aij->lvec) VecDestroy(aij->lvec); 5381eb62cbbSBarry Smith if (aij->Mvctx) VecScatterCtxDestroy(aij->Mvctx); 539a5a9c739SBarry Smith FREE(aij); 540a5a9c739SBarry Smith PLogObjectDestroy(mat); 541a5a9c739SBarry Smith PETSCHEADERDESTROY(mat); 5421eb62cbbSBarry Smith return 0; 5431eb62cbbSBarry Smith } 5441eb62cbbSBarry Smith 54544a69424SLois Curfman McInnes static int MatView_MPIAIJ(PetscObject obj,Viewer viewer) 5461eb62cbbSBarry Smith { 5471eb62cbbSBarry Smith Mat mat = (Mat) obj; 54844a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 5491eb62cbbSBarry Smith int ierr; 5501eb62cbbSBarry Smith 55144a69424SLois Curfman McInnes if (!aij->assembled) SETERR(1,"MatView_MPIAIJ: must assemble matrix first"); 552d6dfbf8fSBarry Smith MPE_Seq_begin(mat->comm,1); 553da69df5fSBarry Smith ViewerPrintf(viewer,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 5541eb62cbbSBarry Smith aij->mytid,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart, 5551eb62cbbSBarry Smith aij->cend); 556da69df5fSBarry Smith ierr = MatView(aij->A,viewer); CHKERR(ierr); 557da69df5fSBarry Smith ierr = MatView(aij->B,viewer); CHKERR(ierr); 558da69df5fSBarry Smith ViewerFlush(viewer); 559d6dfbf8fSBarry Smith MPE_Seq_end(mat->comm,1); 5601eb62cbbSBarry Smith return 0; 5611eb62cbbSBarry Smith } 5621eb62cbbSBarry Smith 563d3c9fed9SLois Curfman McInnes extern int MatMarkDiag_AIJ(Mat_AIJ *); 5641eb62cbbSBarry Smith /* 5651eb62cbbSBarry Smith This has to provide several versions. 5661eb62cbbSBarry Smith 5671eb62cbbSBarry Smith 1) per sequential 5681eb62cbbSBarry Smith 2) a) use only local smoothing updating outer values only once. 5691eb62cbbSBarry Smith b) local smoothing updating outer values each inner iteration 570d6dfbf8fSBarry Smith 3) color updating out values betwen colors. 5711eb62cbbSBarry Smith */ 57244a69424SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,int flag,double shift, 5738a729477SBarry Smith int its,Vec xx) 5748a729477SBarry Smith { 57544a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 576d6dfbf8fSBarry Smith Mat AA = mat->A, BB = mat->B; 57744a69424SLois Curfman McInnes Mat_AIJ *A = (Mat_AIJ *) AA->data, *B = (Mat_AIJ *)BB->data; 5786abc6512SBarry Smith Scalar zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts; 5796abc6512SBarry Smith int ierr,*idx, *diag; 5806abc6512SBarry Smith int n = mat->n, m = mat->m, i; 581da3a660dSBarry Smith Vec tt; 5828a729477SBarry Smith 58344a69424SLois Curfman McInnes if (!mat->assembled) SETERR(1,"MatRelax_MPIAIJ: must assemble matrix first"); 5841eb62cbbSBarry Smith 585d6dfbf8fSBarry Smith VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls); 586d6dfbf8fSBarry Smith xs = x -1; /* shift by one for index start of 1 */ 587da3a660dSBarry Smith ls--; 588d3c9fed9SLois Curfman McInnes if (!A->diag) {if ((ierr = MatMarkDiag_AIJ(A))) return ierr;} 589d6dfbf8fSBarry Smith diag = A->diag; 590acb40c82SBarry Smith if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) { 591acb40c82SBarry Smith SETERR(1,"That option not yet support for parallel AIJ matrices"); 592acb40c82SBarry Smith } 593da3a660dSBarry Smith if (flag & SOR_EISENSTAT) { 594da3a660dSBarry Smith /* Let A = L + U + D; where L is lower trianglar, 595da3a660dSBarry Smith U is upper triangular, E is diagonal; This routine applies 596da3a660dSBarry Smith 597da3a660dSBarry Smith (L + E)^{-1} A (U + E)^{-1} 598da3a660dSBarry Smith 599da3a660dSBarry Smith to a vector efficiently using Eisenstat's trick. This is for 600da3a660dSBarry Smith the case of SSOR preconditioner, so E is D/omega where omega 601da3a660dSBarry Smith is the relaxation factor. 602da3a660dSBarry Smith */ 603da3a660dSBarry Smith ierr = VecCreate(xx,&tt); CHKERR(ierr); 604da3a660dSBarry Smith VecGetArray(tt,&t); 605da3a660dSBarry Smith scale = (2.0/omega) - 1.0; 606da3a660dSBarry Smith /* x = (E + U)^{-1} b */ 607da3a660dSBarry Smith VecSet(&zero,mat->lvec); 608da3a660dSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineUp, 609da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 610da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 611da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 612da3a660dSBarry Smith idx = A->j + diag[i]; 613da3a660dSBarry Smith v = A->a + diag[i]; 614da3a660dSBarry Smith sum = b[i]; 615da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 616da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 617da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 618da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 619da3a660dSBarry Smith v = B->a + B->i[i] - 1; 620da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 621da3a660dSBarry Smith x[i] = omega*(sum/d); 622da3a660dSBarry Smith } 623da3a660dSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineUp, 624da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 625da3a660dSBarry Smith 626da3a660dSBarry Smith /* t = b - (2*E - D)x */ 627da3a660dSBarry Smith v = A->a; 628da3a660dSBarry Smith for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ - 1])*x[i]; } 629da3a660dSBarry Smith 630da3a660dSBarry Smith /* t = (E + L)^{-1}t */ 631da3a660dSBarry Smith ts = t - 1; /* shifted by one for index start of a or mat->j*/ 632da3a660dSBarry Smith diag = A->diag; 633da3a660dSBarry Smith VecSet(&zero,mat->lvec); 634da3a660dSBarry Smith ierr = VecPipelineBegin(tt,0,mat->lvec,0,InsertValues,PipelineDown, 635da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 636da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 637da3a660dSBarry Smith n = diag[i] - A->i[i]; 638da3a660dSBarry Smith idx = A->j + A->i[i] - 1; 639da3a660dSBarry Smith v = A->a + A->i[i] - 1; 640da3a660dSBarry Smith sum = t[i]; 641da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ts,v,idx,n); 642da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 643da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 644da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 645da3a660dSBarry Smith v = B->a + B->i[i] - 1; 646da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 647da3a660dSBarry Smith t[i] = omega*(sum/d); 648da3a660dSBarry Smith } 649da3a660dSBarry Smith ierr = VecPipelineEnd(tt,0,mat->lvec,0,InsertValues,PipelineDown, 650da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 651da3a660dSBarry Smith /* x = x + t */ 652da3a660dSBarry Smith for ( i=0; i<m; i++ ) { x[i] += t[i]; } 653da3a660dSBarry Smith VecDestroy(tt); 654da3a660dSBarry Smith return 0; 655da3a660dSBarry Smith } 656da3a660dSBarry Smith 6571eb62cbbSBarry Smith 658d6dfbf8fSBarry Smith if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){ 659da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 660da3a660dSBarry Smith VecSet(&zero,mat->lvec); VecSet(&zero,xx); 661da3a660dSBarry Smith } 662da3a660dSBarry Smith else { 663d6dfbf8fSBarry Smith ierr=VecScatterBegin(xx,0,mat->lvec,0,InsertValues,ScatterUp,mat->Mvctx); 664d6dfbf8fSBarry Smith CHKERR(ierr); 665d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,mat->lvec,0,InsertValues,ScatterUp,mat->Mvctx); 666d6dfbf8fSBarry Smith CHKERR(ierr); 667da3a660dSBarry Smith } 668d6dfbf8fSBarry Smith while (its--) { 669d6dfbf8fSBarry Smith /* go down through the rows */ 670d6dfbf8fSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineDown, 671d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 672d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 673d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 674d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 675d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 676d6dfbf8fSBarry Smith sum = b[i]; 677d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 678d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 679d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 680d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 681d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 682d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 683d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 684d6dfbf8fSBarry Smith } 685d6dfbf8fSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineDown, 686d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 687d6dfbf8fSBarry Smith /* come up through the rows */ 688d6dfbf8fSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineUp, 689d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 690d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 691d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 692d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 693d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 694d6dfbf8fSBarry Smith sum = b[i]; 695d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 696d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 697d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 698d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 699d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 700d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 701d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 702d6dfbf8fSBarry Smith } 703d6dfbf8fSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineUp, 704d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 705d6dfbf8fSBarry Smith } 706d6dfbf8fSBarry Smith } 707d6dfbf8fSBarry Smith else if (flag & SOR_FORWARD_SWEEP){ 708da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 709da3a660dSBarry Smith VecSet(&zero,mat->lvec); 710da3a660dSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineDown, 711da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 712da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 713da3a660dSBarry Smith n = diag[i] - A->i[i]; 714da3a660dSBarry Smith idx = A->j + A->i[i] - 1; 715da3a660dSBarry Smith v = A->a + A->i[i] - 1; 716da3a660dSBarry Smith sum = b[i]; 717da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 718da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 719da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 720da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 721da3a660dSBarry Smith v = B->a + B->i[i] - 1; 722da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 723da3a660dSBarry Smith x[i] = omega*(sum/d); 724da3a660dSBarry Smith } 725da3a660dSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineDown, 726da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 727da3a660dSBarry Smith its--; 728da3a660dSBarry Smith } 729d6dfbf8fSBarry Smith while (its--) { 730d6dfbf8fSBarry Smith ierr=VecScatterBegin(xx,0,mat->lvec,0,InsertValues,ScatterUp,mat->Mvctx); 731d6dfbf8fSBarry Smith CHKERR(ierr); 732d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,mat->lvec,0,InsertValues,ScatterUp,mat->Mvctx); 733d6dfbf8fSBarry Smith CHKERR(ierr); 734d6dfbf8fSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineDown, 735d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 736d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 737d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 738d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 739d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 740d6dfbf8fSBarry Smith sum = b[i]; 741d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 742d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 743d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 744d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 745d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 746d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 747d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 748d6dfbf8fSBarry Smith } 749d6dfbf8fSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineDown, 750d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 751d6dfbf8fSBarry Smith } 752d6dfbf8fSBarry Smith } 753d6dfbf8fSBarry Smith else if (flag & SOR_BACKWARD_SWEEP){ 754da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 755da3a660dSBarry Smith VecSet(&zero,mat->lvec); 756da3a660dSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineUp, 757da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 758da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 759da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 760da3a660dSBarry Smith idx = A->j + diag[i]; 761da3a660dSBarry Smith v = A->a + diag[i]; 762da3a660dSBarry Smith sum = b[i]; 763da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 764da3a660dSBarry Smith d = shift + A->a[diag[i]-1]; 765da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 766da3a660dSBarry Smith idx = B->j + B->i[i] - 1; 767da3a660dSBarry Smith v = B->a + B->i[i] - 1; 768da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 769da3a660dSBarry Smith x[i] = omega*(sum/d); 770da3a660dSBarry Smith } 771da3a660dSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineUp, 772da3a660dSBarry Smith mat->Mvctx); CHKERR(ierr); 773da3a660dSBarry Smith its--; 774da3a660dSBarry Smith } 775d6dfbf8fSBarry Smith while (its--) { 776d6dfbf8fSBarry Smith ierr = VecScatterBegin(xx,0,mat->lvec,0,InsertValues,ScatterDown, 777d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 778d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,mat->lvec,0,InsertValues,ScatterDown, 779d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 780d6dfbf8fSBarry Smith ierr = VecPipelineBegin(xx,0,mat->lvec,0,InsertValues,PipelineUp, 781d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 782d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 783d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 784d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 785d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 786d6dfbf8fSBarry Smith sum = b[i]; 787d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 788d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 789d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 790d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 791d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 792d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 793d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 794d6dfbf8fSBarry Smith } 795d6dfbf8fSBarry Smith ierr = VecPipelineEnd(xx,0,mat->lvec,0,InsertValues,PipelineUp, 796d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 797d6dfbf8fSBarry Smith } 798d6dfbf8fSBarry Smith } 799d6dfbf8fSBarry Smith else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 800da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 801da3a660dSBarry Smith return MatRelax(mat->A,bb,omega,flag,shift,its,xx); 802da3a660dSBarry Smith } 803d6dfbf8fSBarry Smith ierr=VecScatterBegin(xx,0,mat->lvec,0,InsertValues,ScatterAll,mat->Mvctx); 804d6dfbf8fSBarry Smith CHKERR(ierr); 805d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,mat->lvec,0,InsertValues,ScatterAll,mat->Mvctx); 806d6dfbf8fSBarry Smith CHKERR(ierr); 807d6dfbf8fSBarry Smith while (its--) { 808d6dfbf8fSBarry Smith /* go down through the rows */ 809d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 810d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 811d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 812d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 813d6dfbf8fSBarry Smith sum = b[i]; 814d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 815d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 816d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 817d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 818d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 819d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 820d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 821d6dfbf8fSBarry Smith } 822d6dfbf8fSBarry Smith /* come up through the rows */ 823d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 824d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 825d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 826d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 827d6dfbf8fSBarry Smith sum = b[i]; 828d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 829d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 830d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 831d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 832d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 833d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 834d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 835d6dfbf8fSBarry Smith } 836d6dfbf8fSBarry Smith } 837d6dfbf8fSBarry Smith } 838d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 839da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 840da3a660dSBarry Smith return MatRelax(mat->A,bb,omega,flag,shift,its,xx); 841da3a660dSBarry Smith } 842d6dfbf8fSBarry Smith ierr=VecScatterBegin(xx,0,mat->lvec,0,InsertValues,ScatterAll,mat->Mvctx); 843d6dfbf8fSBarry Smith CHKERR(ierr); 844d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,mat->lvec,0,InsertValues,ScatterAll,mat->Mvctx); 845d6dfbf8fSBarry Smith CHKERR(ierr); 846d6dfbf8fSBarry Smith while (its--) { 847d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 848d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 849d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 850d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 851d6dfbf8fSBarry Smith sum = b[i]; 852d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 853d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 854d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 855d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 856d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 857d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 858d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 859d6dfbf8fSBarry Smith } 860d6dfbf8fSBarry Smith } 861d6dfbf8fSBarry Smith } 862d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 863da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 864da3a660dSBarry Smith return MatRelax(mat->A,bb,omega,flag,shift,its,xx); 865da3a660dSBarry Smith } 866d6dfbf8fSBarry Smith ierr = VecScatterBegin(xx,0,mat->lvec,0,InsertValues,ScatterAll, 867d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 868d6dfbf8fSBarry Smith ierr = VecScatterEnd(xx,0,mat->lvec,0,InsertValues,ScatterAll, 869d6dfbf8fSBarry Smith mat->Mvctx); CHKERR(ierr); 870d6dfbf8fSBarry Smith while (its--) { 871d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 872d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 873d6dfbf8fSBarry Smith idx = A->j + A->i[i] - 1; 874d6dfbf8fSBarry Smith v = A->a + A->i[i] - 1; 875d6dfbf8fSBarry Smith sum = b[i]; 876d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 877d6dfbf8fSBarry Smith d = shift + A->a[diag[i]-1]; 878d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 879d6dfbf8fSBarry Smith idx = B->j + B->i[i] - 1; 880d6dfbf8fSBarry Smith v = B->a + B->i[i] - 1; 881d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 882d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 883d6dfbf8fSBarry Smith } 884d6dfbf8fSBarry Smith } 885d6dfbf8fSBarry Smith } 8868a729477SBarry Smith return 0; 8878a729477SBarry Smith } 88844a69424SLois Curfman McInnes static int MatInsOpt_MPIAIJ(Mat aijin,int op) 889c74985f6SBarry Smith { 89044a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) aijin->data; 891c74985f6SBarry Smith 892c74985f6SBarry Smith if (op == NO_NEW_NONZERO_LOCATIONS) { 893c74985f6SBarry Smith MatSetOption(aij->A,op); 894c74985f6SBarry Smith MatSetOption(aij->B,op); 895c74985f6SBarry Smith } 896c74985f6SBarry Smith else if (op == YES_NEW_NONZERO_LOCATIONS) { 897c74985f6SBarry Smith MatSetOption(aij->A,op); 898c74985f6SBarry Smith MatSetOption(aij->B,op); 899c74985f6SBarry Smith } 900c74985f6SBarry Smith else if (op == COLUMN_ORIENTED) SETERR(1,"Column oriented not supported"); 901c74985f6SBarry Smith return 0; 902c74985f6SBarry Smith } 903c74985f6SBarry Smith 90444a69424SLois Curfman McInnes static int MatSize_MPIAIJ(Mat matin,int *m,int *n) 905c74985f6SBarry Smith { 90644a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 907c74985f6SBarry Smith *m = mat->M; *n = mat->N; 908c74985f6SBarry Smith return 0; 909c74985f6SBarry Smith } 910c74985f6SBarry Smith 91144a69424SLois Curfman McInnes static int MatLocalSize_MPIAIJ(Mat matin,int *m,int *n) 912c74985f6SBarry Smith { 91344a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 914c74985f6SBarry Smith *m = mat->m; *n = mat->n; 915c74985f6SBarry Smith return 0; 916c74985f6SBarry Smith } 917c74985f6SBarry Smith 91844a69424SLois Curfman McInnes static int MatRange_MPIAIJ(Mat matin,int *m,int *n) 919c74985f6SBarry Smith { 92044a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 921c74985f6SBarry Smith *m = mat->rstart; *n = mat->rend; 922c74985f6SBarry Smith return 0; 923c74985f6SBarry Smith } 924c74985f6SBarry Smith 925*39e00950SLois Curfman McInnes static int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 926*39e00950SLois Curfman McInnes { 927*39e00950SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) matin->data; 928*39e00950SLois Curfman McInnes Mat A = aij->A, B = aij->B; 929*39e00950SLois Curfman McInnes Mat_AIJ *Ad = (Mat_AIJ *)(A->data), *Bd = (Mat_AIJ *)(B->data); 930*39e00950SLois Curfman McInnes Scalar *vworkA, *vworkB; 931*39e00950SLois Curfman McInnes int ierr, *cworkA, *cworkB; 932*39e00950SLois Curfman McInnes int nztot, nzA, nzB, i, rstart = aij->rstart, rend = aij->rend; 933*39e00950SLois Curfman McInnes int cstart = aij->cstart; 934*39e00950SLois Curfman McInnes 935*39e00950SLois Curfman McInnes if (!aij->assembled) 936*39e00950SLois Curfman McInnes SETERR(1,"MatGetRow_MPIAIJ: Must assemble matrix first."); 937*39e00950SLois Curfman McInnes if (row < rstart || row >= rend) 938*39e00950SLois Curfman McInnes SETERR(1,"MatGetRow_MPIAIJ: Currently you can get only the local rows.") 939*39e00950SLois Curfman McInnes 940*39e00950SLois Curfman McInnes ierr = MatGetRow(A,row,&nzA,&cworkA,&vworkA); CHKERR(ierr); 941*39e00950SLois Curfman McInnes for (i=0; i<nzA; i++) cworkA[i] += cstart; 942*39e00950SLois Curfman McInnes ierr = MatGetRow(B,row,&nzB,&cworkB,&vworkB); CHKERR(ierr); 943*39e00950SLois Curfman McInnes for (i=0; i<nzB; i++) { 944*39e00950SLois Curfman McInnes printf("i=%d, invcolmap[i]=%d, cwork=%d, vwork=%g\n", 945*39e00950SLois Curfman McInnes i, aij->invcolmap[i], cworkB[i], vworkB[i] ); 946*39e00950SLois Curfman McInnes /* cworkB[i] = aij->invcolmap[cworkB[i]]; */ 947*39e00950SLois Curfman McInnes } 948*39e00950SLois Curfman McInnes 949*39e00950SLois Curfman McInnes if (nztot = nzA + nzB) { 950*39e00950SLois Curfman McInnes *idx = (int *) MALLOC( (nztot)*sizeof(int) ); CHKPTR(*idx); 951*39e00950SLois Curfman McInnes *v = (Scalar *) MALLOC( (nztot)*sizeof(Scalar) ); CHKPTR(*v); 952*39e00950SLois Curfman McInnes for ( i=0; i<nzA; i++ ) { 953*39e00950SLois Curfman McInnes (*idx)[i] = cworkA[i]; 954*39e00950SLois Curfman McInnes (*v)[i] = vworkA[i]; 955*39e00950SLois Curfman McInnes } 956*39e00950SLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 957*39e00950SLois Curfman McInnes (*idx)[i+nzA] = cworkB[i]; 958*39e00950SLois Curfman McInnes (*v)[i] = vworkB[i]; 959*39e00950SLois Curfman McInnes } 960*39e00950SLois Curfman McInnes } 961*39e00950SLois Curfman McInnes else {*idx = 0; *v=0;} 962*39e00950SLois Curfman McInnes *nz = nztot; 963*39e00950SLois Curfman McInnes ierr = MatRestoreRow(A,row,&nzA,&cworkA,&vworkA); CHKERR(ierr); 964*39e00950SLois Curfman McInnes ierr = MatRestoreRow(B,row,&nzB,&cworkB,&vworkB); CHKERR(ierr); 965*39e00950SLois Curfman McInnes return 0; 966*39e00950SLois Curfman McInnes } 967*39e00950SLois Curfman McInnes 968*39e00950SLois Curfman McInnes static int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 969*39e00950SLois Curfman McInnes { 970*39e00950SLois Curfman McInnes if (*idx) FREE(*idx); 971*39e00950SLois Curfman McInnes if (*v) FREE(*v); 972*39e00950SLois Curfman McInnes return 0; 973*39e00950SLois Curfman McInnes } 974*39e00950SLois Curfman McInnes 97544a69424SLois Curfman McInnes static int MatCopy_MPIAIJ(Mat,Mat *); 97644a69424SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MATTYPE,Mat *); 977d6dfbf8fSBarry Smith 9788a729477SBarry Smith /* -------------------------------------------------------------------*/ 97944a69424SLois Curfman McInnes static struct _MatOps MatOps = {MatInsertValues_MPIAIJ, 980*39e00950SLois Curfman McInnes MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ, 98144a69424SLois Curfman McInnes MatMult_MPIAIJ,MatMultAdd_MPIAIJ, 98244a69424SLois Curfman McInnes MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ, 9831eb62cbbSBarry Smith 0,0,0,0, 9848a729477SBarry Smith 0,0, 98544a69424SLois Curfman McInnes MatRelax_MPIAIJ, 9868a729477SBarry Smith 0, 9871eb62cbbSBarry Smith 0,0,0, 98844a69424SLois Curfman McInnes MatCopy_MPIAIJ, 98944a69424SLois Curfman McInnes MatGetDiag_MPIAIJ,0,0, 99044a69424SLois Curfman McInnes MatBeginAssemble_MPIAIJ,MatEndAssemble_MPIAIJ, 9911eb62cbbSBarry Smith 0, 99244a69424SLois Curfman McInnes MatInsOpt_MPIAIJ,MatZero_MPIAIJ,MatZeroRows_MPIAIJ,0, 993c74985f6SBarry Smith 0,0,0,0, 99444a69424SLois Curfman McInnes MatSize_MPIAIJ,MatLocalSize_MPIAIJ,MatRange_MPIAIJ, 99577915d1cSLois Curfman McInnes 0,0, 99644a69424SLois Curfman McInnes 0,MatConvert_MPIAIJ }; 9978a729477SBarry Smith 9988a729477SBarry Smith /*@ 9998a729477SBarry Smith 10001eb62cbbSBarry Smith MatCreateMPIAIJ - Creates a sparse parallel matrix 10011eb62cbbSBarry Smith in AIJ format. 10028a729477SBarry Smith 10038a729477SBarry Smith Input Parameters: 10041eb62cbbSBarry Smith . comm - MPI communicator 10051eb62cbbSBarry Smith . m,n - number of local rows and columns (or -1 to have calculated) 10061eb62cbbSBarry Smith . M,N - global rows and columns (or -1 to have calculated) 10071eb62cbbSBarry Smith . d_nz - total number nonzeros in diagonal portion of matrix 10081eb62cbbSBarry Smith . d_nzz - number of nonzeros per row in diagonal portion of matrix or null 10098a729477SBarry Smith . You must leave room for the diagonal entry even if it is zero. 10101eb62cbbSBarry Smith . o_nz - total number nonzeros in off-diagonal portion of matrix 10111eb62cbbSBarry Smith . o_nzz - number of nonzeros per row in off-diagonal portion of matrix 10121eb62cbbSBarry Smith . or null. You must have at least one nonzero per row. 10138a729477SBarry Smith 10148a729477SBarry Smith Output parameters: 10158a729477SBarry Smith . newmat - the matrix 10168a729477SBarry Smith 10171eb62cbbSBarry Smith Keywords: matrix, aij, compressed row, sparse, parallel 10188a729477SBarry Smith @*/ 10191eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N, 10201eb62cbbSBarry Smith int d_nz,int *d_nnz, int o_nz,int *o_nnz,Mat *newmat) 10218a729477SBarry Smith { 10228a729477SBarry Smith Mat mat; 102344a69424SLois Curfman McInnes Mat_MPIAIJ *aij; 10246abc6512SBarry Smith int ierr, i,sum[2],work[2]; 10258a729477SBarry Smith *newmat = 0; 102644a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm); 1027a5a9c739SBarry Smith PLogObjectCreate(mat); 102844a69424SLois Curfman McInnes mat->data = (void *) (aij = NEW(Mat_MPIAIJ)); CHKPTR(aij); 10298a729477SBarry Smith mat->ops = &MatOps; 103044a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 103144a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 10328a729477SBarry Smith mat->factor = 0; 10338a729477SBarry Smith mat->row = 0; 10348a729477SBarry Smith mat->col = 0; 1035d6dfbf8fSBarry Smith 1036d6dfbf8fSBarry Smith mat->comm = comm; 10371eb62cbbSBarry Smith aij->insertmode = NotSetValues; 10381eb62cbbSBarry Smith MPI_Comm_rank(comm,&aij->mytid); 10391eb62cbbSBarry Smith MPI_Comm_size(comm,&aij->numtids); 10401eb62cbbSBarry Smith 10411eb62cbbSBarry Smith if (M == -1 || N == -1) { 10421eb62cbbSBarry Smith work[0] = m; work[1] = n; 1043d6dfbf8fSBarry Smith MPI_Allreduce((void *) work,(void *) sum,2,MPI_INT,MPI_SUM,comm ); 10441eb62cbbSBarry Smith if (M == -1) M = sum[0]; 10451eb62cbbSBarry Smith if (N == -1) N = sum[1]; 10461eb62cbbSBarry Smith } 10471eb62cbbSBarry Smith if (m == -1) {m = M/aij->numtids + ((M % aij->numtids) > aij->mytid);} 10481eb62cbbSBarry Smith if (n == -1) {n = N/aij->numtids + ((N % aij->numtids) > aij->mytid);} 10498a729477SBarry Smith aij->m = m; 10508a729477SBarry Smith aij->n = n; 10511eb62cbbSBarry Smith aij->N = N; 10521eb62cbbSBarry Smith aij->M = M; 10531eb62cbbSBarry Smith 10541eb62cbbSBarry Smith /* build local table of row and column ownerships */ 10551eb62cbbSBarry Smith aij->rowners = (int *) MALLOC(2*(aij->numtids+2)*sizeof(int)); 10561eb62cbbSBarry Smith CHKPTR(aij->rowners); 10571eb62cbbSBarry Smith aij->cowners = aij->rowners + aij->numtids + 1; 10581eb62cbbSBarry Smith MPI_Allgather(&m,1,MPI_INT,aij->rowners+1,1,MPI_INT,comm); 10591eb62cbbSBarry Smith aij->rowners[0] = 0; 10601eb62cbbSBarry Smith for ( i=2; i<=aij->numtids; i++ ) { 10611eb62cbbSBarry Smith aij->rowners[i] += aij->rowners[i-1]; 10628a729477SBarry Smith } 10631eb62cbbSBarry Smith aij->rstart = aij->rowners[aij->mytid]; 10641eb62cbbSBarry Smith aij->rend = aij->rowners[aij->mytid+1]; 10651eb62cbbSBarry Smith MPI_Allgather(&n,1,MPI_INT,aij->cowners+1,1,MPI_INT,comm); 10661eb62cbbSBarry Smith aij->cowners[0] = 0; 10671eb62cbbSBarry Smith for ( i=2; i<=aij->numtids; i++ ) { 10681eb62cbbSBarry Smith aij->cowners[i] += aij->cowners[i-1]; 10698a729477SBarry Smith } 10701eb62cbbSBarry Smith aij->cstart = aij->cowners[aij->mytid]; 10711eb62cbbSBarry Smith aij->cend = aij->cowners[aij->mytid+1]; 10728a729477SBarry Smith 10738a729477SBarry Smith 10741eb62cbbSBarry Smith ierr = MatCreateSequentialAIJ(m,n,d_nz,d_nnz,&aij->A); CHKERR(ierr); 1075a5a9c739SBarry Smith PLogObjectParent(mat,aij->A); 10761eb62cbbSBarry Smith ierr = MatCreateSequentialAIJ(m,N,o_nz,o_nnz,&aij->B); CHKERR(ierr); 1077a5a9c739SBarry Smith PLogObjectParent(mat,aij->B); 10788a729477SBarry Smith 10791eb62cbbSBarry Smith /* build cache for off array entries formed */ 10801eb62cbbSBarry Smith aij->stash.nmax = CHUNCKSIZE; /* completely arbratray number */ 10811eb62cbbSBarry Smith aij->stash.n = 0; 10821eb62cbbSBarry Smith aij->stash.array = (Scalar *) MALLOC( aij->stash.nmax*(2*sizeof(int) + 10831eb62cbbSBarry Smith sizeof(Scalar))); CHKPTR(aij->stash.array); 10841eb62cbbSBarry Smith aij->stash.idx = (int *) (aij->stash.array + aij->stash.nmax); 10851eb62cbbSBarry Smith aij->stash.idy = (int *) (aij->stash.idx + aij->stash.nmax); 10869e25ed09SBarry Smith aij->colmap = 0; 10879e25ed09SBarry Smith aij->garray = 0; 10888a729477SBarry Smith 10891eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 10901eb62cbbSBarry Smith aij->lvec = 0; 10911eb62cbbSBarry Smith aij->Mvctx = 0; 1092d6dfbf8fSBarry Smith aij->assembled = 0; 10938a729477SBarry Smith 1094d6dfbf8fSBarry Smith *newmat = mat; 1095d6dfbf8fSBarry Smith return 0; 1096d6dfbf8fSBarry Smith } 1097c74985f6SBarry Smith 109844a69424SLois Curfman McInnes static int MatCopy_MPIAIJ(Mat matin,Mat *newmat) 1099d6dfbf8fSBarry Smith { 1100d6dfbf8fSBarry Smith Mat mat; 110144a69424SLois Curfman McInnes Mat_MPIAIJ *aij,*oldmat = (Mat_MPIAIJ *) matin->data; 11026abc6512SBarry Smith int ierr; 1103d6dfbf8fSBarry Smith *newmat = 0; 1104d6dfbf8fSBarry Smith 1105d6dfbf8fSBarry Smith if (!oldmat->assembled) SETERR(1,"Cannot copy unassembled matrix"); 110644a69424SLois Curfman McInnes PETSCHEADERCREATE(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm); 1107a5a9c739SBarry Smith PLogObjectCreate(mat); 110844a69424SLois Curfman McInnes mat->data = (void *) (aij = NEW(Mat_MPIAIJ)); CHKPTR(aij); 1109d6dfbf8fSBarry Smith mat->ops = &MatOps; 111044a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 111144a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 1112d6dfbf8fSBarry Smith mat->factor = matin->factor; 1113d6dfbf8fSBarry Smith mat->row = 0; 1114d6dfbf8fSBarry Smith mat->col = 0; 1115d6dfbf8fSBarry Smith 1116d6dfbf8fSBarry Smith aij->m = oldmat->m; 1117d6dfbf8fSBarry Smith aij->n = oldmat->n; 1118d6dfbf8fSBarry Smith aij->M = oldmat->M; 1119d6dfbf8fSBarry Smith aij->N = oldmat->N; 1120d6dfbf8fSBarry Smith 1121d6dfbf8fSBarry Smith aij->assembled = 1; 1122d6dfbf8fSBarry Smith aij->rstart = oldmat->rstart; 1123d6dfbf8fSBarry Smith aij->rend = oldmat->rend; 1124d6dfbf8fSBarry Smith aij->cstart = oldmat->cstart; 1125d6dfbf8fSBarry Smith aij->cend = oldmat->cend; 1126d6dfbf8fSBarry Smith aij->numtids = oldmat->numtids; 1127d6dfbf8fSBarry Smith aij->mytid = oldmat->mytid; 1128d6dfbf8fSBarry Smith aij->insertmode = NotSetValues; 1129d6dfbf8fSBarry Smith 1130d6dfbf8fSBarry Smith aij->rowners = (int *) MALLOC( (aij->numtids+1)*sizeof(int) ); 1131d6dfbf8fSBarry Smith CHKPTR(aij->rowners); 1132d6dfbf8fSBarry Smith MEMCPY(aij->rowners,oldmat->rowners,(aij->numtids+1)*sizeof(int)); 1133d6dfbf8fSBarry Smith aij->stash.nmax = 0; 1134d6dfbf8fSBarry Smith aij->stash.n = 0; 1135d6dfbf8fSBarry Smith aij->stash.array= 0; 11369e25ed09SBarry Smith aij->colmap = 0; 11379e25ed09SBarry Smith aij->garray = 0; 1138d6dfbf8fSBarry Smith mat->comm = matin->comm; 1139d6dfbf8fSBarry Smith 1140d6dfbf8fSBarry Smith ierr = VecCreate(oldmat->lvec,&aij->lvec); CHKERR(ierr); 1141a5a9c739SBarry Smith PLogObjectParent(mat,aij->lvec); 1142d6dfbf8fSBarry Smith ierr = VecScatterCtxCopy(oldmat->Mvctx,&aij->Mvctx); CHKERR(ierr); 1143a5a9c739SBarry Smith PLogObjectParent(mat,aij->Mvctx); 1144d6dfbf8fSBarry Smith ierr = MatCopy(oldmat->A,&aij->A); CHKERR(ierr); 1145a5a9c739SBarry Smith PLogObjectParent(mat,aij->A); 1146d6dfbf8fSBarry Smith ierr = MatCopy(oldmat->B,&aij->B); CHKERR(ierr); 1147a5a9c739SBarry Smith PLogObjectParent(mat,aij->B); 11488a729477SBarry Smith *newmat = mat; 11498a729477SBarry Smith return 0; 11508a729477SBarry Smith } 1151