xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 3cea93cac9ae2afbf7f7a0b05f63af60a96dad9e)
173f4d377SMatthew Knepley /*$Id: mpiaij.c,v 1.344 2001/08/10 03:30:48 bsmith Exp $*/
28a729477SBarry Smith 
370f55243SBarry Smith #include "src/mat/impls/aij/mpi/mpiaij.h"
4f5eb4b81SSatish Balay #include "src/vec/vecimpl.h"
5d9942c19SSatish Balay #include "src/inline/spops.h"
68a729477SBarry Smith 
7ca44d042SBarry Smith EXTERN int MatSetUpMultiply_MPIAIJ(Mat);
8ca44d042SBarry Smith EXTERN int DisAssemble_MPIAIJ(Mat);
987828ca2SBarry Smith EXTERN int MatSetValues_SeqAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode);
1087828ca2SBarry Smith EXTERN int MatGetRow_SeqAIJ(Mat,int,int*,int**,PetscScalar**);
1187828ca2SBarry Smith EXTERN int MatRestoreRow_SeqAIJ(Mat,int,int*,int**,PetscScalar**);
12ca44d042SBarry Smith EXTERN int MatPrintHelp_SeqAIJ(Mat);
13bc5ccf88SSatish Balay 
140f5bd95cSBarry Smith /*
150f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
169e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
170f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
180f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
190f5bd95cSBarry Smith has an order N integer array but is fast to acess.
209e25ed09SBarry Smith */
214a2ae208SSatish Balay #undef __FUNCT__
224a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIAIJ_Private"
230a198c4cSBarry Smith int CreateColmap_MPIAIJ_Private(Mat mat)
249e25ed09SBarry Smith {
2544a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
26273d9f13SBarry Smith   int        n = aij->B->n,i,ierr;
27dbb450caSBarry Smith 
283a40ed3dSBarry Smith   PetscFunctionBegin;
29aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
30273d9f13SBarry Smith   ierr = PetscTableCreate(n,&aij->colmap);CHKERRQ(ierr);
31b1fc9764SSatish Balay   for (i=0; i<n; i++){
320f5bd95cSBarry Smith     ierr = PetscTableAdd(aij->colmap,aij->garray[i]+1,i+1);CHKERRQ(ierr);
33b1fc9764SSatish Balay   }
34b1fc9764SSatish Balay #else
35b0a32e0cSBarry Smith   ierr = PetscMalloc((mat->N+1)*sizeof(int),&aij->colmap);CHKERRQ(ierr);
36b0a32e0cSBarry Smith   PetscLogObjectMemory(mat,mat->N*sizeof(int));
37273d9f13SBarry Smith   ierr = PetscMemzero(aij->colmap,mat->N*sizeof(int));CHKERRQ(ierr);
38905e6a2fSBarry Smith   for (i=0; i<n; i++) aij->colmap[aij->garray[i]] = i+1;
39b1fc9764SSatish Balay #endif
403a40ed3dSBarry Smith   PetscFunctionReturn(0);
419e25ed09SBarry Smith }
429e25ed09SBarry Smith 
430520107fSSatish Balay #define CHUNKSIZE   15
4430770e4dSSatish Balay #define MatSetValues_SeqAIJ_A_Private(row,col,value,addv) \
450520107fSSatish Balay { \
460520107fSSatish Balay  \
470520107fSSatish Balay     rp   = aj + ai[row] + shift; ap = aa + ai[row] + shift; \
4830770e4dSSatish Balay     rmax = aimax[row]; nrow = ailen[row];  \
49f5e9677aSSatish Balay     col1 = col - shift; \
50f5e9677aSSatish Balay      \
51ba4e3ef2SSatish Balay     low = 0; high = nrow; \
52ba4e3ef2SSatish Balay     while (high-low > 5) { \
53ba4e3ef2SSatish Balay       t = (low+high)/2; \
54ba4e3ef2SSatish Balay       if (rp[t] > col) high = t; \
55ba4e3ef2SSatish Balay       else             low  = t; \
56ba4e3ef2SSatish Balay     } \
572335bdd2SSatish Balay       for (_i=low; _i<high; _i++) { \
58f5e9677aSSatish Balay         if (rp[_i] > col1) break; \
59f5e9677aSSatish Balay         if (rp[_i] == col1) { \
600520107fSSatish Balay           if (addv == ADD_VALUES) ap[_i] += value;   \
610520107fSSatish Balay           else                  ap[_i] = value; \
6230770e4dSSatish Balay           goto a_noinsert; \
630520107fSSatish Balay         } \
640520107fSSatish Balay       }  \
6589280ab3SLois Curfman McInnes       if (nonew == 1) goto a_noinsert; \
6629bbc08cSBarry Smith       else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
670520107fSSatish Balay       if (nrow >= rmax) { \
680520107fSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
69273d9f13SBarry Smith         int    new_nz = ai[am] + CHUNKSIZE,len,*new_i,*new_j; \
7087828ca2SBarry Smith         PetscScalar *new_a; \
710520107fSSatish Balay  \
7229bbc08cSBarry Smith         if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
7389280ab3SLois Curfman McInnes  \
740520107fSSatish Balay         /* malloc new storage space */ \
7587828ca2SBarry Smith         len     = new_nz*(sizeof(int)+sizeof(PetscScalar))+(am+1)*sizeof(int); \
76b0a32e0cSBarry Smith         ierr    = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
770520107fSSatish Balay         new_j   = (int*)(new_a + new_nz); \
780520107fSSatish Balay         new_i   = new_j + new_nz; \
790520107fSSatish Balay  \
800520107fSSatish Balay         /* copy over old data into new slots */ \
810520107fSSatish Balay         for (ii=0; ii<row+1; ii++) {new_i[ii] = ai[ii];} \
82273d9f13SBarry Smith         for (ii=row+1; ii<am+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
83549d3d68SSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[row]+nrow+shift)*sizeof(int));CHKERRQ(ierr); \
840520107fSSatish Balay         len = (new_nz - CHUNKSIZE - ai[row] - nrow - shift); \
85549d3d68SSatish Balay         ierr = PetscMemcpy(new_j+ai[row]+shift+nrow+CHUNKSIZE,aj+ai[row]+shift+nrow, \
86549d3d68SSatish Balay                                                            len*sizeof(int));CHKERRQ(ierr); \
8787828ca2SBarry Smith         ierr = PetscMemcpy(new_a,aa,(ai[row]+nrow+shift)*sizeof(PetscScalar));CHKERRQ(ierr); \
88549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+ai[row]+shift+nrow+CHUNKSIZE,aa+ai[row]+shift+nrow, \
8987828ca2SBarry Smith                                                            len*sizeof(PetscScalar));CHKERRQ(ierr);  \
900520107fSSatish Balay         /* free up old matrix storage */ \
91f5e9677aSSatish Balay  \
92606d414cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
93606d414cSSatish Balay         if (!a->singlemalloc) { \
94606d414cSSatish Balay            ierr = PetscFree(a->i);CHKERRQ(ierr); \
95606d414cSSatish Balay            ierr = PetscFree(a->j);CHKERRQ(ierr); \
96606d414cSSatish Balay         } \
970520107fSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
987c922b88SBarry Smith         a->singlemalloc = PETSC_TRUE; \
990520107fSSatish Balay  \
1000520107fSSatish Balay         rp   = aj + ai[row] + shift; ap = aa + ai[row] + shift; \
10130770e4dSSatish Balay         rmax = aimax[row] = aimax[row] + CHUNKSIZE; \
10287828ca2SBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + sizeof(PetscScalar))); \
1030520107fSSatish Balay         a->maxnz += CHUNKSIZE; \
1040520107fSSatish Balay         a->reallocs++; \
1050520107fSSatish Balay       } \
1060520107fSSatish Balay       N = nrow++ - 1; a->nz++; \
1070520107fSSatish Balay       /* shift up all the later entries in this row */ \
1080520107fSSatish Balay       for (ii=N; ii>=_i; ii--) { \
1090520107fSSatish Balay         rp[ii+1] = rp[ii]; \
1100520107fSSatish Balay         ap[ii+1] = ap[ii]; \
1110520107fSSatish Balay       } \
112f5e9677aSSatish Balay       rp[_i] = col1;  \
1130520107fSSatish Balay       ap[_i] = value;  \
11430770e4dSSatish Balay       a_noinsert: ; \
1150520107fSSatish Balay       ailen[row] = nrow; \
1160520107fSSatish Balay }
1170a198c4cSBarry Smith 
11830770e4dSSatish Balay #define MatSetValues_SeqAIJ_B_Private(row,col,value,addv) \
11930770e4dSSatish Balay { \
12030770e4dSSatish Balay  \
12130770e4dSSatish Balay     rp   = bj + bi[row] + shift; ap = ba + bi[row] + shift; \
12230770e4dSSatish Balay     rmax = bimax[row]; nrow = bilen[row];  \
12330770e4dSSatish Balay     col1 = col - shift; \
12430770e4dSSatish Balay      \
125ba4e3ef2SSatish Balay     low = 0; high = nrow; \
126ba4e3ef2SSatish Balay     while (high-low > 5) { \
127ba4e3ef2SSatish Balay       t = (low+high)/2; \
128ba4e3ef2SSatish Balay       if (rp[t] > col) high = t; \
129ba4e3ef2SSatish Balay       else             low  = t; \
130ba4e3ef2SSatish Balay     } \
1312335bdd2SSatish Balay        for (_i=low; _i<high; _i++) { \
13230770e4dSSatish Balay         if (rp[_i] > col1) break; \
13330770e4dSSatish Balay         if (rp[_i] == col1) { \
13430770e4dSSatish Balay           if (addv == ADD_VALUES) ap[_i] += value;   \
13530770e4dSSatish Balay           else                  ap[_i] = value; \
13630770e4dSSatish Balay           goto b_noinsert; \
13730770e4dSSatish Balay         } \
13830770e4dSSatish Balay       }  \
13989280ab3SLois Curfman McInnes       if (nonew == 1) goto b_noinsert; \
14029bbc08cSBarry Smith       else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
14130770e4dSSatish Balay       if (nrow >= rmax) { \
14230770e4dSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
143273d9f13SBarry Smith         int    new_nz = bi[bm] + CHUNKSIZE,len,*new_i,*new_j; \
14487828ca2SBarry Smith         PetscScalar *new_a; \
14530770e4dSSatish Balay  \
14629bbc08cSBarry Smith         if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
14789280ab3SLois Curfman McInnes  \
14830770e4dSSatish Balay         /* malloc new storage space */ \
14987828ca2SBarry Smith         len     = new_nz*(sizeof(int)+sizeof(PetscScalar))+(bm+1)*sizeof(int); \
150b0a32e0cSBarry Smith         ierr    = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
15130770e4dSSatish Balay         new_j   = (int*)(new_a + new_nz); \
15230770e4dSSatish Balay         new_i   = new_j + new_nz; \
15330770e4dSSatish Balay  \
15430770e4dSSatish Balay         /* copy over old data into new slots */ \
15530770e4dSSatish Balay         for (ii=0; ii<row+1; ii++) {new_i[ii] = bi[ii];} \
156273d9f13SBarry Smith         for (ii=row+1; ii<bm+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
157549d3d68SSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[row]+nrow+shift)*sizeof(int));CHKERRQ(ierr); \
15830770e4dSSatish Balay         len = (new_nz - CHUNKSIZE - bi[row] - nrow - shift); \
159549d3d68SSatish Balay         ierr = PetscMemcpy(new_j+bi[row]+shift+nrow+CHUNKSIZE,bj+bi[row]+shift+nrow, \
160549d3d68SSatish Balay                                                            len*sizeof(int));CHKERRQ(ierr); \
16187828ca2SBarry Smith         ierr = PetscMemcpy(new_a,ba,(bi[row]+nrow+shift)*sizeof(PetscScalar));CHKERRQ(ierr); \
162549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+bi[row]+shift+nrow+CHUNKSIZE,ba+bi[row]+shift+nrow, \
16387828ca2SBarry Smith                                                            len*sizeof(PetscScalar));CHKERRQ(ierr);  \
16430770e4dSSatish Balay         /* free up old matrix storage */ \
16530770e4dSSatish Balay  \
166606d414cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
167606d414cSSatish Balay         if (!b->singlemalloc) { \
168606d414cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
169606d414cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
170606d414cSSatish Balay         } \
17174c639caSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
1727c922b88SBarry Smith         b->singlemalloc = PETSC_TRUE; \
17330770e4dSSatish Balay  \
17430770e4dSSatish Balay         rp   = bj + bi[row] + shift; ap = ba + bi[row] + shift; \
17530770e4dSSatish Balay         rmax = bimax[row] = bimax[row] + CHUNKSIZE; \
17687828ca2SBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + sizeof(PetscScalar))); \
17774c639caSSatish Balay         b->maxnz += CHUNKSIZE; \
17874c639caSSatish Balay         b->reallocs++; \
17930770e4dSSatish Balay       } \
18074c639caSSatish Balay       N = nrow++ - 1; b->nz++; \
18130770e4dSSatish Balay       /* shift up all the later entries in this row */ \
18230770e4dSSatish Balay       for (ii=N; ii>=_i; ii--) { \
18330770e4dSSatish Balay         rp[ii+1] = rp[ii]; \
18430770e4dSSatish Balay         ap[ii+1] = ap[ii]; \
18530770e4dSSatish Balay       } \
18630770e4dSSatish Balay       rp[_i] = col1;  \
18730770e4dSSatish Balay       ap[_i] = value;  \
18830770e4dSSatish Balay       b_noinsert: ; \
18930770e4dSSatish Balay       bilen[row] = nrow; \
19030770e4dSSatish Balay }
19130770e4dSSatish Balay 
1924a2ae208SSatish Balay #undef __FUNCT__
1934a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIAIJ"
19487828ca2SBarry Smith int MatSetValues_MPIAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
1958a729477SBarry Smith {
19644a69424SLois Curfman McInnes   Mat_MPIAIJ   *aij = (Mat_MPIAIJ*)mat->data;
19787828ca2SBarry Smith   PetscScalar  value;
1981eb62cbbSBarry Smith   int          ierr,i,j,rstart = aij->rstart,rend = aij->rend;
1991eb62cbbSBarry Smith   int          cstart = aij->cstart,cend = aij->cend,row,col;
200273d9f13SBarry Smith   PetscTruth   roworiented = aij->roworiented;
2018a729477SBarry Smith 
2020520107fSSatish Balay   /* Some Variables required in the macro */
2034ee7247eSSatish Balay   Mat          A = aij->A;
2044ee7247eSSatish Balay   Mat_SeqAIJ   *a = (Mat_SeqAIJ*)A->data;
20530770e4dSSatish Balay   int          *aimax = a->imax,*ai = a->i,*ailen = a->ilen,*aj = a->j;
20687828ca2SBarry Smith   PetscScalar  *aa = a->a;
207329f5518SBarry Smith   PetscTruth   ignorezeroentries = (((a->ignorezeroentries)&&(addv==ADD_VALUES))?PETSC_TRUE:PETSC_FALSE);
20830770e4dSSatish Balay   Mat          B = aij->B;
20930770e4dSSatish Balay   Mat_SeqAIJ   *b = (Mat_SeqAIJ*)B->data;
210273d9f13SBarry Smith   int          *bimax = b->imax,*bi = b->i,*bilen = b->ilen,*bj = b->j,bm = aij->B->m,am = aij->A->m;
21187828ca2SBarry Smith   PetscScalar  *ba = b->a;
21230770e4dSSatish Balay 
213ba4e3ef2SSatish Balay   int          *rp,ii,nrow,_i,rmax,N,col1,low,high,t;
21430770e4dSSatish Balay   int          nonew = a->nonew,shift = a->indexshift;
21587828ca2SBarry Smith   PetscScalar  *ap;
2164ee7247eSSatish Balay 
2173a40ed3dSBarry Smith   PetscFunctionBegin;
2188a729477SBarry Smith   for (i=0; i<m; i++) {
2195ef9f2a5SBarry Smith     if (im[i] < 0) continue;
220aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
221273d9f13SBarry Smith     if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
2220a198c4cSBarry Smith #endif
2234b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
2244b0e389bSBarry Smith       row = im[i] - rstart;
2251eb62cbbSBarry Smith       for (j=0; j<n; j++) {
2264b0e389bSBarry Smith         if (in[j] >= cstart && in[j] < cend){
2274b0e389bSBarry Smith           col = in[j] - cstart;
2284b0e389bSBarry Smith           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
229329f5518SBarry Smith           if (ignorezeroentries && value == 0.0) continue;
23030770e4dSSatish Balay           MatSetValues_SeqAIJ_A_Private(row,col,value,addv);
2310520107fSSatish Balay           /* ierr = MatSetValues_SeqAIJ(aij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
232273d9f13SBarry Smith         } else if (in[j] < 0) continue;
233aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
234273d9f13SBarry Smith         else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");}
2350a198c4cSBarry Smith #endif
2361eb62cbbSBarry Smith         else {
237227d817aSBarry Smith           if (mat->was_assembled) {
238905e6a2fSBarry Smith             if (!aij->colmap) {
239905e6a2fSBarry Smith               ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr);
240905e6a2fSBarry Smith             }
241aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2420f5bd95cSBarry Smith             ierr = PetscTableFind(aij->colmap,in[j]+1,&col);CHKERRQ(ierr);
243fa46199cSSatish Balay 	    col--;
244b1fc9764SSatish Balay #else
245905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
246b1fc9764SSatish Balay #endif
247ec8511deSBarry Smith             if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
2482493cbb0SBarry Smith               ierr = DisAssemble_MPIAIJ(mat);CHKERRQ(ierr);
2494b0e389bSBarry Smith               col =  in[j];
2509bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
251f9508a3cSSatish Balay               B = aij->B;
252f9508a3cSSatish Balay               b = (Mat_SeqAIJ*)B->data;
253f9508a3cSSatish Balay               bimax = b->imax; bi = b->i; bilen = b->ilen; bj = b->j;
254f9508a3cSSatish Balay               ba = b->a;
255d6dfbf8fSBarry Smith             }
256c48de900SBarry Smith           } else col = in[j];
2574b0e389bSBarry Smith           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
258329f5518SBarry Smith           if (ignorezeroentries && value == 0.0) continue;
25930770e4dSSatish Balay           MatSetValues_SeqAIJ_B_Private(row,col,value,addv);
26030770e4dSSatish Balay           /* ierr = MatSetValues_SeqAIJ(aij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
2611eb62cbbSBarry Smith         }
2621eb62cbbSBarry Smith       }
2635ef9f2a5SBarry Smith     } else {
26490f02eecSBarry Smith       if (!aij->donotstash) {
265d36fbae8SSatish Balay         if (roworiented) {
266329f5518SBarry Smith           if (ignorezeroentries && v[i*n] == 0.0) continue;
2678798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
268d36fbae8SSatish Balay         } else {
269329f5518SBarry Smith           if (ignorezeroentries && v[i] == 0.0) continue;
2708798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
2714b0e389bSBarry Smith         }
2721eb62cbbSBarry Smith       }
2738a729477SBarry Smith     }
27490f02eecSBarry Smith   }
2753a40ed3dSBarry Smith   PetscFunctionReturn(0);
2768a729477SBarry Smith }
2778a729477SBarry Smith 
2784a2ae208SSatish Balay #undef __FUNCT__
2794a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIAIJ"
28087828ca2SBarry Smith int MatGetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v)
281b49de8d1SLois Curfman McInnes {
282b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
283b49de8d1SLois Curfman McInnes   int        ierr,i,j,rstart = aij->rstart,rend = aij->rend;
284b49de8d1SLois Curfman McInnes   int        cstart = aij->cstart,cend = aij->cend,row,col;
285b49de8d1SLois Curfman McInnes 
2863a40ed3dSBarry Smith   PetscFunctionBegin;
287b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
28829bbc08cSBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
289273d9f13SBarry Smith     if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
290b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
291b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
292b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
29329bbc08cSBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column");
294273d9f13SBarry Smith         if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
295b49de8d1SLois Curfman McInnes         if (idxn[j] >= cstart && idxn[j] < cend){
296b49de8d1SLois Curfman McInnes           col = idxn[j] - cstart;
297b49de8d1SLois Curfman McInnes           ierr = MatGetValues(aij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
298fa852ad4SSatish Balay         } else {
299905e6a2fSBarry Smith           if (!aij->colmap) {
300905e6a2fSBarry Smith             ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr);
301905e6a2fSBarry Smith           }
302aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3030f5bd95cSBarry Smith           ierr = PetscTableFind(aij->colmap,idxn[j]+1,&col);CHKERRQ(ierr);
304fa46199cSSatish Balay           col --;
305b1fc9764SSatish Balay #else
306905e6a2fSBarry Smith           col = aij->colmap[idxn[j]] - 1;
307b1fc9764SSatish Balay #endif
308e60e1c95SSatish Balay           if ((col < 0) || (aij->garray[col] != idxn[j])) *(v+i*n+j) = 0.0;
309d9d09a02SSatish Balay           else {
310b49de8d1SLois Curfman McInnes             ierr = MatGetValues(aij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
311b49de8d1SLois Curfman McInnes           }
312b49de8d1SLois Curfman McInnes         }
313b49de8d1SLois Curfman McInnes       }
314a8c6a408SBarry Smith     } else {
31529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
316b49de8d1SLois Curfman McInnes     }
317b49de8d1SLois Curfman McInnes   }
3183a40ed3dSBarry Smith   PetscFunctionReturn(0);
319b49de8d1SLois Curfman McInnes }
320bc5ccf88SSatish Balay 
3214a2ae208SSatish Balay #undef __FUNCT__
3224a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIAIJ"
323bc5ccf88SSatish Balay int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode)
324bc5ccf88SSatish Balay {
325bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ*)mat->data;
326d36fbae8SSatish Balay   int         ierr,nstash,reallocs;
327bc5ccf88SSatish Balay   InsertMode  addv;
328bc5ccf88SSatish Balay 
329bc5ccf88SSatish Balay   PetscFunctionBegin;
330bc5ccf88SSatish Balay   if (aij->donotstash) {
331bc5ccf88SSatish Balay     PetscFunctionReturn(0);
332bc5ccf88SSatish Balay   }
333bc5ccf88SSatish Balay 
334bc5ccf88SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
335bc5ccf88SSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
336bc5ccf88SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
33729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
338bc5ccf88SSatish Balay   }
339bc5ccf88SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
340bc5ccf88SSatish Balay 
3418798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,aij->rowners);CHKERRQ(ierr);
3428798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
343b0a32e0cSBarry Smith   PetscLogInfo(aij->A,"MatAssemblyBegin_MPIAIJ:Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
344bc5ccf88SSatish Balay   PetscFunctionReturn(0);
345bc5ccf88SSatish Balay }
346bc5ccf88SSatish Balay 
347bc5ccf88SSatish Balay 
3484a2ae208SSatish Balay #undef __FUNCT__
3494a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIAIJ"
350bc5ccf88SSatish Balay int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode)
351bc5ccf88SSatish Balay {
352bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
353a2d1c673SSatish Balay   int         i,j,rstart,ncols,n,ierr,flg;
354bc5ccf88SSatish Balay   int         *row,*col,other_disassembled;
35587828ca2SBarry Smith   PetscScalar *val;
356bc5ccf88SSatish Balay   InsertMode  addv = mat->insertmode;
3574032b0d1SHong Zhang #if defined(PETSC_HAVE_SUPERLUDIST) || defined(PETSC_HAVE_SPOOLES)
3589b9367d5SHong Zhang   PetscTruth  flag;
3599e070d67SMatthew Knepley #endif
360bc5ccf88SSatish Balay 
361bc5ccf88SSatish Balay   PetscFunctionBegin;
362bc5ccf88SSatish Balay   if (!aij->donotstash) {
363a2d1c673SSatish Balay     while (1) {
3648798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
365a2d1c673SSatish Balay       if (!flg) break;
366a2d1c673SSatish Balay 
367bc5ccf88SSatish Balay       for (i=0; i<n;) {
368bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
369bc5ccf88SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
370bc5ccf88SSatish Balay         if (j < n) ncols = j-i;
371bc5ccf88SSatish Balay         else       ncols = n-i;
372bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
373bc5ccf88SSatish Balay         ierr = MatSetValues_MPIAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
374bc5ccf88SSatish Balay         i = j;
375bc5ccf88SSatish Balay       }
376bc5ccf88SSatish Balay     }
3778798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
378bc5ccf88SSatish Balay   }
379bc5ccf88SSatish Balay 
380bc5ccf88SSatish Balay   ierr = MatAssemblyBegin(aij->A,mode);CHKERRQ(ierr);
381bc5ccf88SSatish Balay   ierr = MatAssemblyEnd(aij->A,mode);CHKERRQ(ierr);
382bc5ccf88SSatish Balay 
383bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
384bc5ccf88SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
385bc5ccf88SSatish Balay   /*
386bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
387bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
388bc5ccf88SSatish Balay   */
389bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ*)aij->B->data)->nonew)  {
390bc5ccf88SSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
391bc5ccf88SSatish Balay     if (mat->was_assembled && !other_disassembled) {
392bc5ccf88SSatish Balay       ierr = DisAssemble_MPIAIJ(mat);CHKERRQ(ierr);
393bc5ccf88SSatish Balay     }
394bc5ccf88SSatish Balay   }
395bc5ccf88SSatish Balay 
396bc5ccf88SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
397bc5ccf88SSatish Balay     ierr = MatSetUpMultiply_MPIAIJ(mat);CHKERRQ(ierr);
398bc5ccf88SSatish Balay   }
399bc5ccf88SSatish Balay   ierr = MatAssemblyBegin(aij->B,mode);CHKERRQ(ierr);
400bc5ccf88SSatish Balay   ierr = MatAssemblyEnd(aij->B,mode);CHKERRQ(ierr);
401bc5ccf88SSatish Balay 
402606d414cSSatish Balay   if (aij->rowvalues) {
403606d414cSSatish Balay     ierr = PetscFree(aij->rowvalues);CHKERRQ(ierr);
404606d414cSSatish Balay     aij->rowvalues = 0;
405606d414cSSatish Balay   }
4069b9367d5SHong Zhang #if defined(PETSC_HAVE_SUPERLUDIST)
407e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(mat->prefix,"-mat_aij_superlu_dist",&flag);CHKERRQ(ierr);
4089b9367d5SHong Zhang   if (flag) { ierr = MatUseSuperLU_DIST_MPIAIJ(mat);CHKERRQ(ierr); }
4099b9367d5SHong Zhang #endif
4104032b0d1SHong Zhang 
4114032b0d1SHong Zhang #if defined(PETSC_HAVE_SPOOLES)
412e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(mat->prefix,"-mat_aij_spooles",&flag);CHKERRQ(ierr);
4134032b0d1SHong Zhang   if (flag) { ierr = MatUseSpooles_MPIAIJ(mat);CHKERRQ(ierr); }
4144032b0d1SHong Zhang #endif
415bc5ccf88SSatish Balay   PetscFunctionReturn(0);
416bc5ccf88SSatish Balay }
417bc5ccf88SSatish Balay 
4184a2ae208SSatish Balay #undef __FUNCT__
4194a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIAIJ"
4208f6be9afSLois Curfman McInnes int MatZeroEntries_MPIAIJ(Mat A)
4211eb62cbbSBarry Smith {
42244a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ*)A->data;
423dbd7a890SLois Curfman McInnes   int        ierr;
4243a40ed3dSBarry Smith 
4253a40ed3dSBarry Smith   PetscFunctionBegin;
42678b31e54SBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
42778b31e54SBarry Smith   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
4283a40ed3dSBarry Smith   PetscFunctionReturn(0);
4291eb62cbbSBarry Smith }
4301eb62cbbSBarry Smith 
4314a2ae208SSatish Balay #undef __FUNCT__
4324a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIAIJ"
43387828ca2SBarry Smith int MatZeroRows_MPIAIJ(Mat A,IS is,PetscScalar *diag)
4341eb62cbbSBarry Smith {
43544a69424SLois Curfman McInnes   Mat_MPIAIJ     *l = (Mat_MPIAIJ*)A->data;
43617699dbbSLois Curfman McInnes   int            i,ierr,N,*rows,*owners = l->rowners,size = l->size;
437c1dc657dSBarry Smith   int            *nprocs,j,idx,nsends,row;
43817699dbbSLois Curfman McInnes   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
4395392566eSBarry Smith   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
4406a5c57faSSatish Balay   int            *lens,imdex,*lrows,*values,rstart=l->rstart;
441d6dfbf8fSBarry Smith   MPI_Comm       comm = A->comm;
4421eb62cbbSBarry Smith   MPI_Request    *send_waits,*recv_waits;
4431eb62cbbSBarry Smith   MPI_Status     recv_status,*send_status;
4441eb62cbbSBarry Smith   IS             istmp;
44535d8aa7fSBarry Smith   PetscTruth     found;
4461eb62cbbSBarry Smith 
4473a40ed3dSBarry Smith   PetscFunctionBegin;
448e03a110bSBarry Smith   ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr);
44978b31e54SBarry Smith   ierr = ISGetIndices(is,&rows);CHKERRQ(ierr);
4501eb62cbbSBarry Smith 
4511eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
452b0a32e0cSBarry Smith   ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr);
453549d3d68SSatish Balay   ierr   = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr);
454b0a32e0cSBarry Smith   ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/
4551eb62cbbSBarry Smith   for (i=0; i<N; i++) {
4561eb62cbbSBarry Smith     idx = rows[i];
45735d8aa7fSBarry Smith     found = PETSC_FALSE;
45817699dbbSLois Curfman McInnes     for (j=0; j<size; j++) {
4591eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
460c1dc657dSBarry Smith         nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
4611eb62cbbSBarry Smith       }
4621eb62cbbSBarry Smith     }
46329bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
4641eb62cbbSBarry Smith   }
465c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
4661eb62cbbSBarry Smith 
4671eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
468c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
4691eb62cbbSBarry Smith 
4701eb62cbbSBarry Smith   /* post receives:   */
471b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr);
472b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
4731eb62cbbSBarry Smith   for (i=0; i<nrecvs; i++) {
474ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
4751eb62cbbSBarry Smith   }
4761eb62cbbSBarry Smith 
4771eb62cbbSBarry Smith   /* do sends:
4781eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
4791eb62cbbSBarry Smith          the ith processor
4801eb62cbbSBarry Smith   */
481b0a32e0cSBarry Smith   ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr);
482b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
483b0a32e0cSBarry Smith   ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr);
4841eb62cbbSBarry Smith   starts[0] = 0;
485c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
4861eb62cbbSBarry Smith   for (i=0; i<N; i++) {
4871eb62cbbSBarry Smith     svalues[starts[owner[i]]++] = rows[i];
4881eb62cbbSBarry Smith   }
4896831982aSBarry Smith   ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr);
4901eb62cbbSBarry Smith 
4911eb62cbbSBarry Smith   starts[0] = 0;
492c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
4931eb62cbbSBarry Smith   count = 0;
49417699dbbSLois Curfman McInnes   for (i=0; i<size; i++) {
495c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
496c1dc657dSBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
4971eb62cbbSBarry Smith     }
4981eb62cbbSBarry Smith   }
499606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
5001eb62cbbSBarry Smith 
50117699dbbSLois Curfman McInnes   base = owners[rank];
5021eb62cbbSBarry Smith 
5031eb62cbbSBarry Smith   /*  wait on receives */
504b0a32e0cSBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr);
5051eb62cbbSBarry Smith   source = lens + nrecvs;
5061eb62cbbSBarry Smith   count  = nrecvs; slen = 0;
5071eb62cbbSBarry Smith   while (count) {
508ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
5091eb62cbbSBarry Smith     /* unpack receives into our local space */
510ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
511d6dfbf8fSBarry Smith     source[imdex]  = recv_status.MPI_SOURCE;
512d6dfbf8fSBarry Smith     lens[imdex]    = n;
5131eb62cbbSBarry Smith     slen          += n;
5141eb62cbbSBarry Smith     count--;
5151eb62cbbSBarry Smith   }
516606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
5171eb62cbbSBarry Smith 
5181eb62cbbSBarry Smith   /* move the data into the send scatter */
519b0a32e0cSBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr);
5201eb62cbbSBarry Smith   count = 0;
5211eb62cbbSBarry Smith   for (i=0; i<nrecvs; i++) {
5221eb62cbbSBarry Smith     values = rvalues + i*nmax;
5231eb62cbbSBarry Smith     for (j=0; j<lens[i]; j++) {
5241eb62cbbSBarry Smith       lrows[count++] = values[j] - base;
5251eb62cbbSBarry Smith     }
5261eb62cbbSBarry Smith   }
527606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
528606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
529606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
530606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
5311eb62cbbSBarry Smith 
5321eb62cbbSBarry Smith   /* actually zap the local rows */
533029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
534b0a32e0cSBarry Smith   PetscLogObjectParent(A,istmp);
5356a5c57faSSatish Balay 
5366eb55b6aSBarry Smith   /*
5376eb55b6aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
5386eb55b6aSBarry Smith      is square and the user wishes to set the diagonal we use seperate
5396eb55b6aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
5406eb55b6aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
5416eb55b6aSBarry Smith 
5426eb55b6aSBarry Smith        Contributed by: Mathew Knepley
5436eb55b6aSBarry Smith   */
544e2d53e46SBarry Smith   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
545e2d53e46SBarry Smith   ierr = MatZeroRows(l->B,istmp,0);CHKERRQ(ierr);
5466eb55b6aSBarry Smith   if (diag && (l->A->M == l->A->N)) {
5476eb55b6aSBarry Smith     ierr      = MatZeroRows(l->A,istmp,diag);CHKERRQ(ierr);
548e2d53e46SBarry Smith   } else if (diag) {
549e2d53e46SBarry Smith     ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr);
550fa46199cSSatish Balay     if (((Mat_SeqAIJ*)l->A->data)->nonew) {
55129bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options\n\
552fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
5536525c446SSatish Balay     }
554e2d53e46SBarry Smith     for (i = 0; i < slen; i++) {
555e2d53e46SBarry Smith       row  = lrows[i] + rstart;
556e2d53e46SBarry Smith       ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr);
557e2d53e46SBarry Smith     }
558e2d53e46SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
559e2d53e46SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
5606eb55b6aSBarry Smith   } else {
5616a5c57faSSatish Balay     ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr);
5626eb55b6aSBarry Smith   }
56378b31e54SBarry Smith   ierr = ISDestroy(istmp);CHKERRQ(ierr);
564606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
56572dacd9aSBarry Smith 
5661eb62cbbSBarry Smith   /* wait on sends */
5671eb62cbbSBarry Smith   if (nsends) {
568b0a32e0cSBarry Smith     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
569ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
570606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
5711eb62cbbSBarry Smith   }
572606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
573606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
5741eb62cbbSBarry Smith 
5753a40ed3dSBarry Smith   PetscFunctionReturn(0);
5761eb62cbbSBarry Smith }
5771eb62cbbSBarry Smith 
5784a2ae208SSatish Balay #undef __FUNCT__
5794a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIAIJ"
5808f6be9afSLois Curfman McInnes int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy)
5811eb62cbbSBarry Smith {
582416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
583fbd6ef76SBarry Smith   int        ierr,nt;
584416022c9SBarry Smith 
5853a40ed3dSBarry Smith   PetscFunctionBegin;
586a2ce50c7SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
587273d9f13SBarry Smith   if (nt != A->n) {
588273d9f13SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%d) and xx (%d)",A->n,nt);
589fbd6ef76SBarry Smith   }
59043a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
591f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
59243a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
593f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
5943a40ed3dSBarry Smith   PetscFunctionReturn(0);
5951eb62cbbSBarry Smith }
5961eb62cbbSBarry Smith 
5974a2ae208SSatish Balay #undef __FUNCT__
5984a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIAIJ"
5998f6be9afSLois Curfman McInnes int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
600da3a660dSBarry Smith {
601416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
602da3a660dSBarry Smith   int        ierr;
6033a40ed3dSBarry Smith 
6043a40ed3dSBarry Smith   PetscFunctionBegin;
60543a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
606f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
60743a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
608f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
6093a40ed3dSBarry Smith   PetscFunctionReturn(0);
610da3a660dSBarry Smith }
611da3a660dSBarry Smith 
6124a2ae208SSatish Balay #undef __FUNCT__
6134a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIAIJ"
6147c922b88SBarry Smith int MatMultTranspose_MPIAIJ(Mat A,Vec xx,Vec yy)
615da3a660dSBarry Smith {
616416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
617da3a660dSBarry Smith   int        ierr;
618da3a660dSBarry Smith 
6193a40ed3dSBarry Smith   PetscFunctionBegin;
620da3a660dSBarry Smith   /* do nondiagonal part */
6217c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
622da3a660dSBarry Smith   /* send it on its way */
623537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
624da3a660dSBarry Smith   /* do local part */
6257c922b88SBarry Smith   ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
626da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
627da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
628da3a660dSBarry Smith   /* but is not perhaps always true. */
629537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
6303a40ed3dSBarry Smith   PetscFunctionReturn(0);
631da3a660dSBarry Smith }
632da3a660dSBarry Smith 
6334a2ae208SSatish Balay #undef __FUNCT__
6344a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIAIJ"
6357c922b88SBarry Smith int MatMultTransposeAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
636da3a660dSBarry Smith {
637416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
638da3a660dSBarry Smith   int        ierr;
639da3a660dSBarry Smith 
6403a40ed3dSBarry Smith   PetscFunctionBegin;
641da3a660dSBarry Smith   /* do nondiagonal part */
6427c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
643da3a660dSBarry Smith   /* send it on its way */
644537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
645da3a660dSBarry Smith   /* do local part */
6467c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
647da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
648da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
649da3a660dSBarry Smith   /* but is not perhaps always true. */
6500a198c4cSBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
6513a40ed3dSBarry Smith   PetscFunctionReturn(0);
652da3a660dSBarry Smith }
653da3a660dSBarry Smith 
6541eb62cbbSBarry Smith /*
6551eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
6561eb62cbbSBarry Smith    diagonal block
6571eb62cbbSBarry Smith */
6584a2ae208SSatish Balay #undef __FUNCT__
6594a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIAIJ"
6608f6be9afSLois Curfman McInnes int MatGetDiagonal_MPIAIJ(Mat A,Vec v)
6611eb62cbbSBarry Smith {
6623a40ed3dSBarry Smith   int        ierr;
663416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
6643a40ed3dSBarry Smith 
6653a40ed3dSBarry Smith   PetscFunctionBegin;
666273d9f13SBarry Smith   if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
6675baf8537SBarry Smith   if (a->rstart != a->cstart || a->rend != a->cend) {
66829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"row partition must equal col partition");
6693a40ed3dSBarry Smith   }
6703a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
6713a40ed3dSBarry Smith   PetscFunctionReturn(0);
6721eb62cbbSBarry Smith }
6731eb62cbbSBarry Smith 
6744a2ae208SSatish Balay #undef __FUNCT__
6754a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIAIJ"
67687828ca2SBarry Smith int MatScale_MPIAIJ(PetscScalar *aa,Mat A)
677052efed2SBarry Smith {
678052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
679052efed2SBarry Smith   int        ierr;
6803a40ed3dSBarry Smith 
6813a40ed3dSBarry Smith   PetscFunctionBegin;
682052efed2SBarry Smith   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
683052efed2SBarry Smith   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
6843a40ed3dSBarry Smith   PetscFunctionReturn(0);
685052efed2SBarry Smith }
686052efed2SBarry Smith 
6874a2ae208SSatish Balay #undef __FUNCT__
6884a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIAIJ"
689e1311b90SBarry Smith int MatDestroy_MPIAIJ(Mat mat)
6901eb62cbbSBarry Smith {
69144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
6921eb62cbbSBarry Smith   int        ierr;
69383e2fdc7SBarry Smith 
6943a40ed3dSBarry Smith   PetscFunctionBegin;
695aa482453SBarry Smith #if defined(PETSC_USE_LOG)
696b0a32e0cSBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",mat->M,mat->N);
697a5a9c739SBarry Smith #endif
6988798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
699606d414cSSatish Balay   ierr = PetscFree(aij->rowners);CHKERRQ(ierr);
70078b31e54SBarry Smith   ierr = MatDestroy(aij->A);CHKERRQ(ierr);
70178b31e54SBarry Smith   ierr = MatDestroy(aij->B);CHKERRQ(ierr);
702aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
7030f5bd95cSBarry Smith   if (aij->colmap) {ierr = PetscTableDelete(aij->colmap);CHKERRQ(ierr);}
704b1fc9764SSatish Balay #else
705606d414cSSatish Balay   if (aij->colmap) {ierr = PetscFree(aij->colmap);CHKERRQ(ierr);}
706b1fc9764SSatish Balay #endif
707606d414cSSatish Balay   if (aij->garray) {ierr = PetscFree(aij->garray);CHKERRQ(ierr);}
7087c922b88SBarry Smith   if (aij->lvec)   {ierr = VecDestroy(aij->lvec);CHKERRQ(ierr);}
7097c922b88SBarry Smith   if (aij->Mvctx)  {ierr = VecScatterDestroy(aij->Mvctx);CHKERRQ(ierr);}
710606d414cSSatish Balay   if (aij->rowvalues) {ierr = PetscFree(aij->rowvalues);CHKERRQ(ierr);}
711606d414cSSatish Balay   ierr = PetscFree(aij);CHKERRQ(ierr);
7123a40ed3dSBarry Smith   PetscFunctionReturn(0);
7131eb62cbbSBarry Smith }
714ee50ffe9SBarry Smith 
7154aedb280SBarry Smith extern int MatMPIAIJFactorInfo_SuperLu(Mat,PetscViewer);
716a072f7f7SHong Zhang extern int MatFactorInfo_Spooles(Mat,PetscViewer);
7174aedb280SBarry Smith 
7184a2ae208SSatish Balay #undef __FUNCT__
7194a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIAIJ_ASCIIorDraworSocket"
720b0a32e0cSBarry Smith int MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
721416022c9SBarry Smith {
72244a69424SLois Curfman McInnes   Mat_MPIAIJ        *aij = (Mat_MPIAIJ*)mat->data;
723dbb450caSBarry Smith   Mat_SeqAIJ*       C = (Mat_SeqAIJ*)aij->A->data;
724fb9695e5SSatish Balay   int               ierr,shift = C->indexshift,rank = aij->rank,size = aij->size;
725f1af5d2fSBarry Smith   PetscTruth        isdraw,isascii,flg;
726b0a32e0cSBarry Smith   PetscViewer       sviewer;
727f3ef73ceSBarry Smith   PetscViewerFormat format;
728416022c9SBarry Smith 
7293a40ed3dSBarry Smith   PetscFunctionBegin;
730fb9695e5SSatish Balay   ierr  = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
731b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
7320f5bd95cSBarry Smith   if (isascii) {
733b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
734456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
7354e220ebcSLois Curfman McInnes       MatInfo info;
7361dab6e02SBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
737888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
738b0a32e0cSBarry Smith       ierr = PetscOptionsHasName(PETSC_NULL,"-mat_aij_no_inode",&flg);CHKERRQ(ierr);
7396831982aSBarry Smith       if (flg) {
740b0a32e0cSBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d mem %d, not using I-node routines\n",
741273d9f13SBarry Smith 					      rank,mat->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory);CHKERRQ(ierr);
7426831982aSBarry Smith       } else {
743b0a32e0cSBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d mem %d, using I-node routines\n",
744273d9f13SBarry Smith 		    rank,mat->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory);CHKERRQ(ierr);
7456831982aSBarry Smith       }
746888f2ed8SSatish Balay       ierr = MatGetInfo(aij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
747b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used);CHKERRQ(ierr);
748888f2ed8SSatish Balay       ierr = MatGetInfo(aij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
749b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used);CHKERRQ(ierr);
750b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
751a40aa06bSLois Curfman McInnes       ierr = VecScatterView(aij->Mvctx,viewer);CHKERRQ(ierr);
7523a40ed3dSBarry Smith       PetscFunctionReturn(0);
753fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
7543a40ed3dSBarry Smith       PetscFunctionReturn(0);
7554aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
756*3cea93caSBarry Smith #if defined(PETSC_HAVE_SUPERLUDIST) && !defined(PETSC_USE_SINGLE)
7574aedb280SBarry Smith       ierr = MatMPIAIJFactorInfo_SuperLu(mat,viewer);CHKERRQ(ierr);
7584aedb280SBarry Smith #endif
759*3cea93caSBarry Smith #if defined(PETSC_HAVE_SPOOLES) && !defined(PETSC_USE_SINGLE)
760a072f7f7SHong Zhang       ierr = MatFactorInfo_Spooles(mat,viewer);CHKERRQ(ierr);
7610473ca23SHong Zhang #endif
762471340fbSHong Zhang 
7634aedb280SBarry Smith       PetscFunctionReturn(0);
76408480c60SBarry Smith     }
7650f5bd95cSBarry Smith   } else if (isdraw) {
766b0a32e0cSBarry Smith     PetscDraw       draw;
76719bcc07fSBarry Smith     PetscTruth isnull;
768b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
769b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
77019bcc07fSBarry Smith   }
77119bcc07fSBarry Smith 
77217699dbbSLois Curfman McInnes   if (size == 1) {
773e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)aij->A,mat->name);CHKERRQ(ierr);
77478b31e54SBarry Smith     ierr = MatView(aij->A,viewer);CHKERRQ(ierr);
7753a40ed3dSBarry Smith   } else {
77695373324SBarry Smith     /* assemble the entire matrix onto first processor. */
77795373324SBarry Smith     Mat         A;
778ec8511deSBarry Smith     Mat_SeqAIJ *Aloc;
779273d9f13SBarry Smith     int         M = mat->M,N = mat->N,m,*ai,*aj,row,*cols,i,*ct;
78087828ca2SBarry Smith     PetscScalar *a;
7812ee70a88SLois Curfman McInnes 
78217699dbbSLois Curfman McInnes     if (!rank) {
78355843e3eSBarry Smith       ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
7843a40ed3dSBarry Smith     } else {
78555843e3eSBarry Smith       ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
78695373324SBarry Smith     }
787b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
788416022c9SBarry Smith 
78995373324SBarry Smith     /* copy over the A part */
790ec8511deSBarry Smith     Aloc = (Mat_SeqAIJ*)aij->A->data;
791273d9f13SBarry Smith     m = aij->A->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
79295373324SBarry Smith     row = aij->rstart;
793dbb450caSBarry Smith     for (i=0; i<ai[m]+shift; i++) {aj[i] += aij->cstart + shift;}
79495373324SBarry Smith     for (i=0; i<m; i++) {
795416022c9SBarry Smith       ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr);
79695373324SBarry Smith       row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
79795373324SBarry Smith     }
7982ee70a88SLois Curfman McInnes     aj = Aloc->j;
799dbb450caSBarry Smith     for (i=0; i<ai[m]+shift; i++) {aj[i] -= aij->cstart + shift;}
80095373324SBarry Smith 
80195373324SBarry Smith     /* copy over the B part */
802ec8511deSBarry Smith     Aloc = (Mat_SeqAIJ*)aij->B->data;
803273d9f13SBarry Smith     m    = aij->B->m;  ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
80495373324SBarry Smith     row  = aij->rstart;
805b0a32e0cSBarry Smith     ierr = PetscMalloc((ai[m]+1)*sizeof(int),&cols);CHKERRQ(ierr);
806b0a32e0cSBarry Smith     ct   = cols;
807dbb450caSBarry Smith     for (i=0; i<ai[m]+shift; i++) {cols[i] = aij->garray[aj[i]+shift];}
80895373324SBarry Smith     for (i=0; i<m; i++) {
809416022c9SBarry Smith       ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr);
81095373324SBarry Smith       row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
81195373324SBarry Smith     }
812606d414cSSatish Balay     ierr = PetscFree(ct);CHKERRQ(ierr);
8136d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8146d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
81555843e3eSBarry Smith     /*
81655843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
817b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
81855843e3eSBarry Smith     */
819b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
820e03a110bSBarry Smith     if (!rank) {
821e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
8226831982aSBarry Smith       ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
82395373324SBarry Smith     }
824b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
82578b31e54SBarry Smith     ierr = MatDestroy(A);CHKERRQ(ierr);
82695373324SBarry Smith   }
8273a40ed3dSBarry Smith   PetscFunctionReturn(0);
8281eb62cbbSBarry Smith }
8291eb62cbbSBarry Smith 
8304a2ae208SSatish Balay #undef __FUNCT__
8314a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIAIJ"
832b0a32e0cSBarry Smith int MatView_MPIAIJ(Mat mat,PetscViewer viewer)
833416022c9SBarry Smith {
834416022c9SBarry Smith   int        ierr;
8356831982aSBarry Smith   PetscTruth isascii,isdraw,issocket,isbinary;
836416022c9SBarry Smith 
8373a40ed3dSBarry Smith   PetscFunctionBegin;
838b0a32e0cSBarry Smith   ierr  = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
839fb9695e5SSatish Balay   ierr  = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
840fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
841b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
8420f5bd95cSBarry Smith   if (isascii || isdraw || isbinary || issocket) {
8437b2a1423SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
8445cd90555SBarry Smith   } else {
84529bbc08cSBarry Smith     SETERRQ1(1,"Viewer type %s not supported by MPIAIJ matrices",((PetscObject)viewer)->type_name);
846416022c9SBarry Smith   }
8473a40ed3dSBarry Smith   PetscFunctionReturn(0);
848416022c9SBarry Smith }
849416022c9SBarry Smith 
8501eb62cbbSBarry Smith 
851c14dc6b6SHong Zhang 
8524a2ae208SSatish Balay #undef __FUNCT__
8534a2ae208SSatish Balay #define __FUNCT__ "MatRelax_MPIAIJ"
854c14dc6b6SHong Zhang int MatRelax_MPIAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
8558a729477SBarry Smith {
85644a69424SLois Curfman McInnes   Mat_MPIAIJ   *mat = (Mat_MPIAIJ*)matin->data;
857c14dc6b6SHong Zhang   int          ierr;
858c14dc6b6SHong Zhang   Vec          bb1;
859a6c309e7SHong Zhang   PetscScalar  mone=-1.0;
8608a729477SBarry Smith 
8613a40ed3dSBarry Smith   PetscFunctionBegin;
86291723122SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
863c14dc6b6SHong Zhang 
864c14dc6b6SHong Zhang   ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
8652798e883SHong Zhang 
866c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
867da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
868bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
8692798e883SHong Zhang       its--;
870da3a660dSBarry Smith     }
8712798e883SHong Zhang 
8722798e883SHong Zhang     while (its--) {
8733a40ed3dSBarry Smith       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
8743a40ed3dSBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
8752798e883SHong Zhang 
876c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
877c14dc6b6SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
878c14dc6b6SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
8792798e883SHong Zhang 
880c14dc6b6SHong Zhang       /* local sweep */
881bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);
882c14dc6b6SHong Zhang       CHKERRQ(ierr);
8832798e883SHong Zhang     }
8843a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP){
885da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
886c14dc6b6SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr);
8872798e883SHong Zhang       its--;
888da3a660dSBarry Smith     }
8892798e883SHong Zhang     while (its--) {
8903a40ed3dSBarry Smith       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
8913a40ed3dSBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
8922798e883SHong Zhang 
893c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
894c14dc6b6SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
895c14dc6b6SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
896c14dc6b6SHong Zhang 
897c14dc6b6SHong Zhang       /* local sweep */
898a6c309e7SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,PETSC_NULL,xx);
899c14dc6b6SHong Zhang       CHKERRQ(ierr);
9002798e883SHong Zhang     }
9013a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
902da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
903c14dc6b6SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr);
9042798e883SHong Zhang       its--;
905da3a660dSBarry Smith     }
9062798e883SHong Zhang     while (its--) {
9072e8a6d31SBarry Smith       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
9082e8a6d31SBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
9092798e883SHong Zhang 
910c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
911c14dc6b6SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
912c14dc6b6SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
9132798e883SHong Zhang 
914c14dc6b6SHong Zhang       /* local sweep */
915a6c309e7SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,PETSC_NULL,xx);
916c14dc6b6SHong Zhang       CHKERRQ(ierr);
9172798e883SHong Zhang     }
9183a40ed3dSBarry Smith   } else {
91929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Parallel SOR not supported");
920c16cb8f2SBarry Smith   }
921c14dc6b6SHong Zhang 
922c14dc6b6SHong Zhang   ierr = VecDestroy(bb1);CHKERRQ(ierr);
9233a40ed3dSBarry Smith   PetscFunctionReturn(0);
9248a729477SBarry Smith }
925a66be287SLois Curfman McInnes 
9264a2ae208SSatish Balay #undef __FUNCT__
9274a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIAIJ"
9288f6be9afSLois Curfman McInnes int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,MatInfo *info)
929a66be287SLois Curfman McInnes {
930a66be287SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ*)matin->data;
931a66be287SLois Curfman McInnes   Mat        A = mat->A,B = mat->B;
9324e220ebcSLois Curfman McInnes   int        ierr;
933329f5518SBarry Smith   PetscReal  isend[5],irecv[5];
934a66be287SLois Curfman McInnes 
9353a40ed3dSBarry Smith   PetscFunctionBegin;
9364e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
9374e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
9384e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
9394e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
9404e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
9414e220ebcSLois Curfman McInnes   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
9424e220ebcSLois Curfman McInnes   isend[3] += info->memory;  isend[4] += info->mallocs;
943a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
9444e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
9454e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
9464e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
9474e220ebcSLois Curfman McInnes     info->memory       = isend[3];
9484e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
949a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
950d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
9514e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
9524e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
9534e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
9544e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
9554e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
956a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
957d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
9584e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
9594e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
9604e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
9614e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
9624e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
963a66be287SLois Curfman McInnes   }
9644e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
9654e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
9664e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
967273d9f13SBarry Smith   info->rows_global       = (double)matin->M;
968273d9f13SBarry Smith   info->columns_global    = (double)matin->N;
969273d9f13SBarry Smith   info->rows_local        = (double)matin->m;
970273d9f13SBarry Smith   info->columns_local     = (double)matin->N;
9714e220ebcSLois Curfman McInnes 
9723a40ed3dSBarry Smith   PetscFunctionReturn(0);
973a66be287SLois Curfman McInnes }
974a66be287SLois Curfman McInnes 
9754a2ae208SSatish Balay #undef __FUNCT__
9764a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIAIJ"
9778f6be9afSLois Curfman McInnes int MatSetOption_MPIAIJ(Mat A,MatOption op)
978c74985f6SBarry Smith {
979c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
9801dee9f54SBarry Smith   int        ierr;
981c74985f6SBarry Smith 
9823a40ed3dSBarry Smith   PetscFunctionBegin;
98312c028f9SKris Buschelman   switch (op) {
98412c028f9SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
98512c028f9SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
98612c028f9SKris Buschelman   case MAT_COLUMNS_UNSORTED:
98712c028f9SKris Buschelman   case MAT_COLUMNS_SORTED:
98812c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
98912c028f9SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
99012c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
99112c028f9SKris Buschelman   case MAT_USE_INODES:
99212c028f9SKris Buschelman   case MAT_DO_NOT_USE_INODES:
99312c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
9941dee9f54SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
9951dee9f54SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
99612c028f9SKris Buschelman     break;
99712c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
9987c922b88SBarry Smith     a->roworiented = PETSC_TRUE;
9991dee9f54SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
10001dee9f54SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
100112c028f9SKris Buschelman     break;
100212c028f9SKris Buschelman   case MAT_ROWS_SORTED:
100312c028f9SKris Buschelman   case MAT_ROWS_UNSORTED:
100412c028f9SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1005d03495bdSKris Buschelman   case MAT_USE_SINGLE_PRECISION_SOLVES:
1006b0a32e0cSBarry Smith     PetscLogInfo(A,"MatSetOption_MPIAIJ:Option ignored\n");
100712c028f9SKris Buschelman     break;
100812c028f9SKris Buschelman   case MAT_COLUMN_ORIENTED:
10097c922b88SBarry Smith     a->roworiented = PETSC_FALSE;
10101dee9f54SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
10111dee9f54SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
101212c028f9SKris Buschelman     break;
101312c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
10147c922b88SBarry Smith     a->donotstash = PETSC_TRUE;
101512c028f9SKris Buschelman     break;
101612c028f9SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
101729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
101812c028f9SKris Buschelman   default:
101929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
10203a40ed3dSBarry Smith   }
10213a40ed3dSBarry Smith   PetscFunctionReturn(0);
1022c74985f6SBarry Smith }
1023c74985f6SBarry Smith 
10244a2ae208SSatish Balay #undef __FUNCT__
10254a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIAIJ"
102687828ca2SBarry Smith int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v)
102739e00950SLois Curfman McInnes {
1028154123eaSLois Curfman McInnes   Mat_MPIAIJ   *mat = (Mat_MPIAIJ*)matin->data;
102987828ca2SBarry Smith   PetscScalar  *vworkA,*vworkB,**pvA,**pvB,*v_p;
1030154123eaSLois Curfman McInnes   int          i,ierr,*cworkA,*cworkB,**pcA,**pcB,cstart = mat->cstart;
1031154123eaSLois Curfman McInnes   int          nztot,nzA,nzB,lrow,rstart = mat->rstart,rend = mat->rend;
103270f0671dSBarry Smith   int          *cmap,*idx_p;
103339e00950SLois Curfman McInnes 
10343a40ed3dSBarry Smith   PetscFunctionBegin;
103529bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
10367a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
10377a0afa10SBarry Smith 
103870f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
10397a0afa10SBarry Smith     /*
10407a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
10417a0afa10SBarry Smith     */
10427a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ*)mat->A->data,*Ba = (Mat_SeqAIJ*)mat->B->data;
1043273d9f13SBarry Smith     int     max = 1,tmp;
1044273d9f13SBarry Smith     for (i=0; i<matin->m; i++) {
10457a0afa10SBarry Smith       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
10467a0afa10SBarry Smith       if (max < tmp) { max = tmp; }
10477a0afa10SBarry Smith     }
104887828ca2SBarry Smith     ierr = PetscMalloc(max*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
10497a0afa10SBarry Smith     mat->rowindices = (int*)(mat->rowvalues + max);
10507a0afa10SBarry Smith   }
10517a0afa10SBarry Smith 
105229bbc08cSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Only local rows")
1053abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
105439e00950SLois Curfman McInnes 
1055154123eaSLois Curfman McInnes   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1056154123eaSLois Curfman McInnes   if (!v)   {pvA = 0; pvB = 0;}
1057154123eaSLois Curfman McInnes   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1058f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1059f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1060154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1061154123eaSLois Curfman McInnes 
106270f0671dSBarry Smith   cmap  = mat->garray;
1063154123eaSLois Curfman McInnes   if (v  || idx) {
1064154123eaSLois Curfman McInnes     if (nztot) {
1065154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
106670f0671dSBarry Smith       int imark = -1;
1067154123eaSLois Curfman McInnes       if (v) {
106870f0671dSBarry Smith         *v = v_p = mat->rowvalues;
106939e00950SLois Curfman McInnes         for (i=0; i<nzB; i++) {
107070f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart)   v_p[i] = vworkB[i];
1071154123eaSLois Curfman McInnes           else break;
1072154123eaSLois Curfman McInnes         }
1073154123eaSLois Curfman McInnes         imark = i;
107470f0671dSBarry Smith         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
107570f0671dSBarry Smith         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1076154123eaSLois Curfman McInnes       }
1077154123eaSLois Curfman McInnes       if (idx) {
107870f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
107970f0671dSBarry Smith         if (imark > -1) {
108070f0671dSBarry Smith           for (i=0; i<imark; i++) {
108170f0671dSBarry Smith             idx_p[i] = cmap[cworkB[i]];
108270f0671dSBarry Smith           }
108370f0671dSBarry Smith         } else {
1084154123eaSLois Curfman McInnes           for (i=0; i<nzB; i++) {
108570f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart)   idx_p[i] = cmap[cworkB[i]];
1086154123eaSLois Curfman McInnes             else break;
1087154123eaSLois Curfman McInnes           }
1088154123eaSLois Curfman McInnes           imark = i;
108970f0671dSBarry Smith         }
109070f0671dSBarry Smith         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart + cworkA[i];
109170f0671dSBarry Smith         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]];
109239e00950SLois Curfman McInnes       }
10933f97c4b0SBarry Smith     } else {
10941ca473b0SSatish Balay       if (idx) *idx = 0;
10951ca473b0SSatish Balay       if (v)   *v   = 0;
10961ca473b0SSatish Balay     }
1097154123eaSLois Curfman McInnes   }
109839e00950SLois Curfman McInnes   *nz = nztot;
1099f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1100f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
11013a40ed3dSBarry Smith   PetscFunctionReturn(0);
110239e00950SLois Curfman McInnes }
110339e00950SLois Curfman McInnes 
11044a2ae208SSatish Balay #undef __FUNCT__
11054a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIAIJ"
110687828ca2SBarry Smith int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v)
110739e00950SLois Curfman McInnes {
11087a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
11093a40ed3dSBarry Smith 
11103a40ed3dSBarry Smith   PetscFunctionBegin;
11117a0afa10SBarry Smith   if (aij->getrowactive == PETSC_FALSE) {
111229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
11137a0afa10SBarry Smith   }
11147a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
11153a40ed3dSBarry Smith   PetscFunctionReturn(0);
111639e00950SLois Curfman McInnes }
111739e00950SLois Curfman McInnes 
11184a2ae208SSatish Balay #undef __FUNCT__
11194a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIAIJ"
1120329f5518SBarry Smith int MatNorm_MPIAIJ(Mat mat,NormType type,PetscReal *norm)
1121855ac2c5SLois Curfman McInnes {
1122855ac2c5SLois Curfman McInnes   Mat_MPIAIJ   *aij = (Mat_MPIAIJ*)mat->data;
1123ec8511deSBarry Smith   Mat_SeqAIJ   *amat = (Mat_SeqAIJ*)aij->A->data,*bmat = (Mat_SeqAIJ*)aij->B->data;
1124416022c9SBarry Smith   int          ierr,i,j,cstart = aij->cstart,shift = amat->indexshift;
1125329f5518SBarry Smith   PetscReal    sum = 0.0;
112687828ca2SBarry Smith   PetscScalar  *v;
112704ca555eSLois Curfman McInnes 
11283a40ed3dSBarry Smith   PetscFunctionBegin;
112917699dbbSLois Curfman McInnes   if (aij->size == 1) {
113014183eadSLois Curfman McInnes     ierr =  MatNorm(aij->A,type,norm);CHKERRQ(ierr);
113137fa93a5SLois Curfman McInnes   } else {
113204ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
113304ca555eSLois Curfman McInnes       v = amat->a;
113404ca555eSLois Curfman McInnes       for (i=0; i<amat->nz; i++) {
1135aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1136329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
113704ca555eSLois Curfman McInnes #else
113804ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
113904ca555eSLois Curfman McInnes #endif
114004ca555eSLois Curfman McInnes       }
114104ca555eSLois Curfman McInnes       v = bmat->a;
114204ca555eSLois Curfman McInnes       for (i=0; i<bmat->nz; i++) {
1143aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1144329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
114504ca555eSLois Curfman McInnes #else
114604ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
114704ca555eSLois Curfman McInnes #endif
114804ca555eSLois Curfman McInnes       }
1149d7d1e502SBarry Smith       ierr = MPI_Allreduce(&sum,norm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
115004ca555eSLois Curfman McInnes       *norm = sqrt(*norm);
11513a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1152329f5518SBarry Smith       PetscReal *tmp,*tmp2;
115304ca555eSLois Curfman McInnes       int    *jj,*garray = aij->garray;
1154b0a32e0cSBarry Smith       ierr = PetscMalloc((mat->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
1155b0a32e0cSBarry Smith       ierr = PetscMalloc((mat->N+1)*sizeof(PetscReal),&tmp2);CHKERRQ(ierr);
1156273d9f13SBarry Smith       ierr = PetscMemzero(tmp,mat->N*sizeof(PetscReal));CHKERRQ(ierr);
115704ca555eSLois Curfman McInnes       *norm = 0.0;
115804ca555eSLois Curfman McInnes       v = amat->a; jj = amat->j;
115904ca555eSLois Curfman McInnes       for (j=0; j<amat->nz; j++) {
1160579c6b6fSBarry Smith         tmp[cstart + *jj++ + shift] += PetscAbsScalar(*v);  v++;
116104ca555eSLois Curfman McInnes       }
116204ca555eSLois Curfman McInnes       v = bmat->a; jj = bmat->j;
116304ca555eSLois Curfman McInnes       for (j=0; j<bmat->nz; j++) {
1164579c6b6fSBarry Smith         tmp[garray[*jj++ + shift]] += PetscAbsScalar(*v); v++;
116504ca555eSLois Curfman McInnes       }
1166d7d1e502SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
1167273d9f13SBarry Smith       for (j=0; j<mat->N; j++) {
116804ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
116904ca555eSLois Curfman McInnes       }
1170606d414cSSatish Balay       ierr = PetscFree(tmp);CHKERRQ(ierr);
1171606d414cSSatish Balay       ierr = PetscFree(tmp2);CHKERRQ(ierr);
11723a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1173329f5518SBarry Smith       PetscReal ntemp = 0.0;
1174273d9f13SBarry Smith       for (j=0; j<aij->A->m; j++) {
1175dbb450caSBarry Smith         v = amat->a + amat->i[j] + shift;
117604ca555eSLois Curfman McInnes         sum = 0.0;
117704ca555eSLois Curfman McInnes         for (i=0; i<amat->i[j+1]-amat->i[j]; i++) {
1178cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
117904ca555eSLois Curfman McInnes         }
1180dbb450caSBarry Smith         v = bmat->a + bmat->i[j] + shift;
118104ca555eSLois Curfman McInnes         for (i=0; i<bmat->i[j+1]-bmat->i[j]; i++) {
1182cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
118304ca555eSLois Curfman McInnes         }
1184515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
118504ca555eSLois Curfman McInnes       }
1186d7d1e502SBarry Smith       ierr = MPI_Allreduce(&ntemp,norm,1,MPIU_REAL,MPI_MAX,mat->comm);CHKERRQ(ierr);
1187ca161407SBarry Smith     } else {
118829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for two norm");
118904ca555eSLois Curfman McInnes     }
119037fa93a5SLois Curfman McInnes   }
11913a40ed3dSBarry Smith   PetscFunctionReturn(0);
1192855ac2c5SLois Curfman McInnes }
1193855ac2c5SLois Curfman McInnes 
11944a2ae208SSatish Balay #undef __FUNCT__
11954a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIAIJ"
11968f6be9afSLois Curfman McInnes int MatTranspose_MPIAIJ(Mat A,Mat *matout)
1197b7c46309SBarry Smith {
1198b7c46309SBarry Smith   Mat_MPIAIJ   *a = (Mat_MPIAIJ*)A->data;
1199dbb450caSBarry Smith   Mat_SeqAIJ   *Aloc = (Mat_SeqAIJ*)a->A->data;
1200416022c9SBarry Smith   int          ierr,shift = Aloc->indexshift;
1201273d9f13SBarry Smith   int          M = A->M,N = A->N,m,*ai,*aj,row,*cols,i,*ct;
12023a40ed3dSBarry Smith   Mat          B;
120387828ca2SBarry Smith   PetscScalar  *array;
1204b7c46309SBarry Smith 
12053a40ed3dSBarry Smith   PetscFunctionBegin;
12067c922b88SBarry Smith   if (!matout && M != N) {
120729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1208d4bb536fSBarry Smith   }
1209d4bb536fSBarry Smith 
1210273d9f13SBarry Smith   ierr = MatCreateMPIAIJ(A->comm,A->n,A->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr);
1211b7c46309SBarry Smith 
1212b7c46309SBarry Smith   /* copy over the A part */
1213ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*)a->A->data;
1214273d9f13SBarry Smith   m = a->A->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1215b7c46309SBarry Smith   row = a->rstart;
1216dbb450caSBarry Smith   for (i=0; i<ai[m]+shift; i++) {aj[i] += a->cstart + shift;}
1217b7c46309SBarry Smith   for (i=0; i<m; i++) {
1218416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1219b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
1220b7c46309SBarry Smith   }
1221b7c46309SBarry Smith   aj = Aloc->j;
12224af08d9eSBarry Smith   for (i=0; i<ai[m]+shift; i++) {aj[i] -= a->cstart + shift;}
1223b7c46309SBarry Smith 
1224b7c46309SBarry Smith   /* copy over the B part */
1225ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*)a->B->data;
1226273d9f13SBarry Smith   m = a->B->m;  ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1227b7c46309SBarry Smith   row  = a->rstart;
1228b0a32e0cSBarry Smith   ierr = PetscMalloc((1+ai[m]-shift)*sizeof(int),&cols);CHKERRQ(ierr);
1229b0a32e0cSBarry Smith   ct   = cols;
1230dbb450caSBarry Smith   for (i=0; i<ai[m]+shift; i++) {cols[i] = a->garray[aj[i]+shift];}
1231b7c46309SBarry Smith   for (i=0; i<m; i++) {
1232416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1233b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
1234b7c46309SBarry Smith   }
1235606d414cSSatish Balay   ierr = PetscFree(ct);CHKERRQ(ierr);
12366d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12376d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12387c922b88SBarry Smith   if (matout) {
12390de55854SLois Curfman McInnes     *matout = B;
12400de55854SLois Curfman McInnes   } else {
1241273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
12420de55854SLois Curfman McInnes   }
12433a40ed3dSBarry Smith   PetscFunctionReturn(0);
1244b7c46309SBarry Smith }
1245b7c46309SBarry Smith 
12464a2ae208SSatish Balay #undef __FUNCT__
12474a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIAIJ"
12484b967eb1SSatish Balay int MatDiagonalScale_MPIAIJ(Mat mat,Vec ll,Vec rr)
1249a008b906SSatish Balay {
12504b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
12514b967eb1SSatish Balay   Mat        a = aij->A,b = aij->B;
1252a008b906SSatish Balay   int        ierr,s1,s2,s3;
1253a008b906SSatish Balay 
12543a40ed3dSBarry Smith   PetscFunctionBegin;
12554b967eb1SSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
12564b967eb1SSatish Balay   if (rr) {
1257e1311b90SBarry Smith     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
125829bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
12594b967eb1SSatish Balay     /* Overlap communication with computation. */
126043a90d84SBarry Smith     ierr = VecScatterBegin(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx);CHKERRQ(ierr);
1261a008b906SSatish Balay   }
12624b967eb1SSatish Balay   if (ll) {
1263e1311b90SBarry Smith     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
126429bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1265f830108cSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,0);CHKERRQ(ierr);
12664b967eb1SSatish Balay   }
12674b967eb1SSatish Balay   /* scale  the diagonal block */
1268f830108cSBarry Smith   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
12694b967eb1SSatish Balay 
12704b967eb1SSatish Balay   if (rr) {
12714b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
127243a90d84SBarry Smith     ierr = VecScatterEnd(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx);CHKERRQ(ierr);
1273f830108cSBarry Smith     ierr = (*b->ops->diagonalscale)(b,0,aij->lvec);CHKERRQ(ierr);
12744b967eb1SSatish Balay   }
12754b967eb1SSatish Balay 
12763a40ed3dSBarry Smith   PetscFunctionReturn(0);
1277a008b906SSatish Balay }
1278a008b906SSatish Balay 
1279a008b906SSatish Balay 
12804a2ae208SSatish Balay #undef __FUNCT__
12814a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPIAIJ"
12828f6be9afSLois Curfman McInnes int MatPrintHelp_MPIAIJ(Mat A)
1283682d7d0cSBarry Smith {
1284682d7d0cSBarry Smith   Mat_MPIAIJ *a   = (Mat_MPIAIJ*)A->data;
12853a40ed3dSBarry Smith   int        ierr;
1286682d7d0cSBarry Smith 
12873a40ed3dSBarry Smith   PetscFunctionBegin;
12883a40ed3dSBarry Smith   if (!a->rank) {
12893a40ed3dSBarry Smith     ierr = MatPrintHelp_SeqAIJ(a->A);CHKERRQ(ierr);
12903a40ed3dSBarry Smith   }
12913a40ed3dSBarry Smith   PetscFunctionReturn(0);
1292682d7d0cSBarry Smith }
1293682d7d0cSBarry Smith 
12944a2ae208SSatish Balay #undef __FUNCT__
12954a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPIAIJ"
12968f6be9afSLois Curfman McInnes int MatGetBlockSize_MPIAIJ(Mat A,int *bs)
12975a838052SSatish Balay {
12983a40ed3dSBarry Smith   PetscFunctionBegin;
12995a838052SSatish Balay   *bs = 1;
13003a40ed3dSBarry Smith   PetscFunctionReturn(0);
13015a838052SSatish Balay }
13024a2ae208SSatish Balay #undef __FUNCT__
13034a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIAIJ"
13048f6be9afSLois Curfman McInnes int MatSetUnfactored_MPIAIJ(Mat A)
1305bb5a7306SBarry Smith {
1306bb5a7306SBarry Smith   Mat_MPIAIJ *a   = (Mat_MPIAIJ*)A->data;
1307bb5a7306SBarry Smith   int        ierr;
13083a40ed3dSBarry Smith 
13093a40ed3dSBarry Smith   PetscFunctionBegin;
1310bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
13113a40ed3dSBarry Smith   PetscFunctionReturn(0);
1312bb5a7306SBarry Smith }
1313bb5a7306SBarry Smith 
13144a2ae208SSatish Balay #undef __FUNCT__
13154a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIAIJ"
1316d4bb536fSBarry Smith int MatEqual_MPIAIJ(Mat A,Mat B,PetscTruth *flag)
1317d4bb536fSBarry Smith {
1318d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ*)B->data,*matA = (Mat_MPIAIJ*)A->data;
1319d4bb536fSBarry Smith   Mat        a,b,c,d;
1320d4bb536fSBarry Smith   PetscTruth flg;
1321d4bb536fSBarry Smith   int        ierr;
1322d4bb536fSBarry Smith 
13233a40ed3dSBarry Smith   PetscFunctionBegin;
1324273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPIAIJ,&flg);CHKERRQ(ierr);
1325273d9f13SBarry Smith   if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type");
1326d4bb536fSBarry Smith   a = matA->A; b = matA->B;
1327d4bb536fSBarry Smith   c = matB->A; d = matB->B;
1328d4bb536fSBarry Smith 
1329d4bb536fSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1330d4bb536fSBarry Smith   if (flg == PETSC_TRUE) {
1331d4bb536fSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1332d4bb536fSBarry Smith   }
1333ca161407SBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
13343a40ed3dSBarry Smith   PetscFunctionReturn(0);
1335d4bb536fSBarry Smith }
1336d4bb536fSBarry Smith 
13374a2ae208SSatish Balay #undef __FUNCT__
13384a2ae208SSatish Balay #define __FUNCT__ "MatCopy_MPIAIJ"
1339cb5b572fSBarry Smith int MatCopy_MPIAIJ(Mat A,Mat B,MatStructure str)
1340cb5b572fSBarry Smith {
1341cb5b572fSBarry Smith   int        ierr;
1342cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1343cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
1344273d9f13SBarry Smith   PetscTruth flg;
1345cb5b572fSBarry Smith 
1346cb5b572fSBarry Smith   PetscFunctionBegin;
1347273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPIAIJ,&flg);CHKERRQ(ierr);
1348273d9f13SBarry Smith   if (str != SAME_NONZERO_PATTERN || !flg) {
1349cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
1350cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
1351cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
1352cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
1353cb5b572fSBarry Smith        then copying the submatrices */
1354cb5b572fSBarry Smith     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1355cb5b572fSBarry Smith   } else {
1356cb5b572fSBarry Smith     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
1357cb5b572fSBarry Smith     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
1358cb5b572fSBarry Smith   }
1359cb5b572fSBarry Smith   PetscFunctionReturn(0);
1360cb5b572fSBarry Smith }
1361cb5b572fSBarry Smith 
13624a2ae208SSatish Balay #undef __FUNCT__
13634a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIAIJ"
1364273d9f13SBarry Smith int MatSetUpPreallocation_MPIAIJ(Mat A)
1365273d9f13SBarry Smith {
1366273d9f13SBarry Smith   int        ierr;
1367273d9f13SBarry Smith 
1368273d9f13SBarry Smith   PetscFunctionBegin;
1369273d9f13SBarry Smith   ierr =  MatMPIAIJSetPreallocation(A,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1370273d9f13SBarry Smith   PetscFunctionReturn(0);
1371273d9f13SBarry Smith }
1372273d9f13SBarry Smith 
1373ca44d042SBarry Smith EXTERN int MatDuplicate_MPIAIJ(Mat,MatDuplicateOption,Mat *);
1374ca44d042SBarry Smith EXTERN int MatIncreaseOverlap_MPIAIJ(Mat,int,IS *,int);
1375ca44d042SBarry Smith EXTERN int MatFDColoringCreate_MPIAIJ(Mat,ISColoring,MatFDColoring);
1376ca44d042SBarry Smith EXTERN int MatGetSubMatrices_MPIAIJ (Mat,int,IS *,IS *,MatReuse,Mat **);
1377ca44d042SBarry Smith EXTERN int MatGetSubMatrix_MPIAIJ (Mat,IS,IS,int,MatReuse,Mat *);
137887828ca2SBarry Smith #if !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_SINGLE)
1379b9617806SBarry Smith EXTERN int MatLUFactorSymbolic_MPIAIJ_TFS(Mat,IS,IS,MatLUInfo*,Mat*);
1380b9617806SBarry Smith #endif
138100e6dbe6SBarry Smith 
1382ac90fabeSBarry Smith #include "petscblaslapack.h"
1383ac90fabeSBarry Smith 
1384ac90fabeSBarry Smith #undef __FUNCT__
1385ac90fabeSBarry Smith #define __FUNCT__ "MatAXPY_MPIAIJ"
1386ac90fabeSBarry Smith int MatAXPY_MPIAIJ(PetscScalar *a,Mat X,Mat Y,MatStructure str)
1387ac90fabeSBarry Smith {
1388ac90fabeSBarry Smith   int        ierr,one;
1389ac90fabeSBarry Smith   Mat_MPIAIJ *xx  = (Mat_MPIAIJ *)X->data,*yy = (Mat_MPIAIJ *)Y->data;
1390ac90fabeSBarry Smith   Mat_SeqAIJ *x,*y;
1391ac90fabeSBarry Smith 
1392ac90fabeSBarry Smith   PetscFunctionBegin;
1393ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
1394ac90fabeSBarry Smith     x  = (Mat_SeqAIJ *)xx->A->data;
1395ac90fabeSBarry Smith     y  = (Mat_SeqAIJ *)yy->A->data;
1396ac90fabeSBarry Smith     BLaxpy_(&x->nz,a,x->a,&one,y->a,&one);
1397ac90fabeSBarry Smith     x  = (Mat_SeqAIJ *)xx->B->data;
1398ac90fabeSBarry Smith     y  = (Mat_SeqAIJ *)yy->B->data;
1399ac90fabeSBarry Smith     BLaxpy_(&x->nz,a,x->a,&one,y->a,&one);
1400ac90fabeSBarry Smith   } else {
1401ac90fabeSBarry Smith     ierr = MatAXPY_Basic(a,X,Y,str);CHKERRQ(ierr);
1402ac90fabeSBarry Smith   }
1403ac90fabeSBarry Smith   PetscFunctionReturn(0);
1404ac90fabeSBarry Smith }
1405ac90fabeSBarry Smith 
14068a729477SBarry Smith /* -------------------------------------------------------------------*/
1407cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
1408cda55fadSBarry Smith        MatGetRow_MPIAIJ,
1409cda55fadSBarry Smith        MatRestoreRow_MPIAIJ,
1410cda55fadSBarry Smith        MatMult_MPIAIJ,
1411cda55fadSBarry Smith        MatMultAdd_MPIAIJ,
14127c922b88SBarry Smith        MatMultTranspose_MPIAIJ,
14137c922b88SBarry Smith        MatMultTransposeAdd_MPIAIJ,
1414cda55fadSBarry Smith        0,
1415cda55fadSBarry Smith        0,
1416cda55fadSBarry Smith        0,
1417cda55fadSBarry Smith        0,
1418cda55fadSBarry Smith        0,
1419cda55fadSBarry Smith        0,
142044a69424SLois Curfman McInnes        MatRelax_MPIAIJ,
1421b7c46309SBarry Smith        MatTranspose_MPIAIJ,
1422cda55fadSBarry Smith        MatGetInfo_MPIAIJ,
1423cda55fadSBarry Smith        MatEqual_MPIAIJ,
1424cda55fadSBarry Smith        MatGetDiagonal_MPIAIJ,
1425cda55fadSBarry Smith        MatDiagonalScale_MPIAIJ,
1426cda55fadSBarry Smith        MatNorm_MPIAIJ,
1427cda55fadSBarry Smith        MatAssemblyBegin_MPIAIJ,
1428cda55fadSBarry Smith        MatAssemblyEnd_MPIAIJ,
14291eb62cbbSBarry Smith        0,
1430cda55fadSBarry Smith        MatSetOption_MPIAIJ,
1431cda55fadSBarry Smith        MatZeroEntries_MPIAIJ,
1432cda55fadSBarry Smith        MatZeroRows_MPIAIJ,
143387828ca2SBarry Smith #if !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_SINGLE)
1434b9617806SBarry Smith        MatLUFactorSymbolic_MPIAIJ_TFS,
1435b9617806SBarry Smith #else
1436cda55fadSBarry Smith        0,
1437b9617806SBarry Smith #endif
1438cda55fadSBarry Smith        0,
1439cda55fadSBarry Smith        0,
1440cda55fadSBarry Smith        0,
1441273d9f13SBarry Smith        MatSetUpPreallocation_MPIAIJ,
1442cda55fadSBarry Smith        0,
1443cda55fadSBarry Smith        0,
1444cda55fadSBarry Smith        0,
1445cda55fadSBarry Smith        0,
14462e8a6d31SBarry Smith        MatDuplicate_MPIAIJ,
1447cda55fadSBarry Smith        0,
1448cda55fadSBarry Smith        0,
1449cda55fadSBarry Smith        0,
1450cda55fadSBarry Smith        0,
1451ac90fabeSBarry Smith        MatAXPY_MPIAIJ,
1452cda55fadSBarry Smith        MatGetSubMatrices_MPIAIJ,
1453cda55fadSBarry Smith        MatIncreaseOverlap_MPIAIJ,
1454cda55fadSBarry Smith        MatGetValues_MPIAIJ,
1455cb5b572fSBarry Smith        MatCopy_MPIAIJ,
1456052efed2SBarry Smith        MatPrintHelp_MPIAIJ,
1457cda55fadSBarry Smith        MatScale_MPIAIJ,
1458cda55fadSBarry Smith        0,
1459cda55fadSBarry Smith        0,
1460cda55fadSBarry Smith        0,
1461cda55fadSBarry Smith        MatGetBlockSize_MPIAIJ,
1462cda55fadSBarry Smith        0,
1463cda55fadSBarry Smith        0,
1464cda55fadSBarry Smith        0,
1465cda55fadSBarry Smith        0,
1466cda55fadSBarry Smith        MatFDColoringCreate_MPIAIJ,
1467cda55fadSBarry Smith        0,
1468cda55fadSBarry Smith        MatSetUnfactored_MPIAIJ,
1469cda55fadSBarry Smith        0,
1470cda55fadSBarry Smith        0,
1471cda55fadSBarry Smith        MatGetSubMatrix_MPIAIJ,
1472e03a110bSBarry Smith        MatDestroy_MPIAIJ,
1473e03a110bSBarry Smith        MatView_MPIAIJ,
14748a124369SBarry Smith        MatGetPetscMaps_Petsc,
1475a2243be0SBarry Smith        0,
1476a2243be0SBarry Smith        0,
1477a2243be0SBarry Smith        0,
1478a2243be0SBarry Smith        0,
1479a2243be0SBarry Smith        0,
1480a2243be0SBarry Smith        0,
1481a2243be0SBarry Smith        0,
1482a2243be0SBarry Smith        0,
1483a2243be0SBarry Smith        MatSetColoring_MPIAIJ,
1484779c1a83SBarry Smith        MatSetValuesAdic_MPIAIJ,
1485779c1a83SBarry Smith        MatSetValuesAdifor_MPIAIJ
1486a2243be0SBarry Smith };
148736ce4990SBarry Smith 
14882e8a6d31SBarry Smith /* ----------------------------------------------------------------------------------------*/
14892e8a6d31SBarry Smith 
1490fb2e594dSBarry Smith EXTERN_C_BEGIN
14914a2ae208SSatish Balay #undef __FUNCT__
14924a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIAIJ"
14932e8a6d31SBarry Smith int MatStoreValues_MPIAIJ(Mat mat)
14942e8a6d31SBarry Smith {
14952e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
14962e8a6d31SBarry Smith   int        ierr;
14972e8a6d31SBarry Smith 
14982e8a6d31SBarry Smith   PetscFunctionBegin;
14992e8a6d31SBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
15002e8a6d31SBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
15012e8a6d31SBarry Smith   PetscFunctionReturn(0);
15022e8a6d31SBarry Smith }
1503fb2e594dSBarry Smith EXTERN_C_END
15042e8a6d31SBarry Smith 
1505fb2e594dSBarry Smith EXTERN_C_BEGIN
15064a2ae208SSatish Balay #undef __FUNCT__
15074a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIAIJ"
15082e8a6d31SBarry Smith int MatRetrieveValues_MPIAIJ(Mat mat)
15092e8a6d31SBarry Smith {
15102e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
15112e8a6d31SBarry Smith   int        ierr;
15122e8a6d31SBarry Smith 
15132e8a6d31SBarry Smith   PetscFunctionBegin;
15142e8a6d31SBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
15152e8a6d31SBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
15162e8a6d31SBarry Smith   PetscFunctionReturn(0);
15172e8a6d31SBarry Smith }
1518fb2e594dSBarry Smith EXTERN_C_END
15198a729477SBarry Smith 
1520e090d566SSatish Balay #include "petscpc.h"
152127508adbSBarry Smith EXTERN_C_BEGIN
1522ca44d042SBarry Smith EXTERN int MatGetDiagonalBlock_MPIAIJ(Mat,PetscTruth *,MatReuse,Mat *);
152327508adbSBarry Smith EXTERN_C_END
152427508adbSBarry Smith 
1525273d9f13SBarry Smith EXTERN_C_BEGIN
15264a2ae208SSatish Balay #undef __FUNCT__
15274a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIAIJ"
1528273d9f13SBarry Smith int MatCreate_MPIAIJ(Mat B)
15298a729477SBarry Smith {
153044cd7ae7SLois Curfman McInnes   Mat_MPIAIJ *b;
1531f1af5d2fSBarry Smith   int        ierr,i,size;
1532416022c9SBarry Smith 
15333a40ed3dSBarry Smith   PetscFunctionBegin;
1534273d9f13SBarry Smith   ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr);
15351d55c564SBarry Smith 
1536b0a32e0cSBarry Smith   ierr            = PetscNew(Mat_MPIAIJ,&b);CHKERRQ(ierr);
1537b0a32e0cSBarry Smith   B->data         = (void*)b;
1538549d3d68SSatish Balay   ierr            = PetscMemzero(b,sizeof(Mat_MPIAIJ));CHKERRQ(ierr);
1539549d3d68SSatish Balay   ierr            = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
154044cd7ae7SLois Curfman McInnes   B->factor       = 0;
154144cd7ae7SLois Curfman McInnes   B->assembled    = PETSC_FALSE;
154290f02eecSBarry Smith   B->mapping      = 0;
1543d6dfbf8fSBarry Smith 
154447794344SBarry Smith   B->insertmode      = NOT_SET_VALUES;
15459eb4d147SSatish Balay   b->size            = size;
1546273d9f13SBarry Smith   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
15471eb62cbbSBarry Smith 
1548273d9f13SBarry Smith   ierr = PetscSplitOwnership(B->comm,&B->m,&B->M);CHKERRQ(ierr);
1549273d9f13SBarry Smith   ierr = PetscSplitOwnership(B->comm,&B->n,&B->N);CHKERRQ(ierr);
15501eb62cbbSBarry Smith 
1551c7fcc2eaSBarry Smith   /* the information in the maps duplicates the information computed below, eventually
1552c7fcc2eaSBarry Smith      we should remove the duplicate information that is not contained in the maps */
15538a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
15548a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr);
1555c7fcc2eaSBarry Smith 
15561eb62cbbSBarry Smith   /* build local table of row and column ownerships */
1557b0a32e0cSBarry Smith   ierr = PetscMalloc(2*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr);
1558b0a32e0cSBarry Smith   PetscLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIAIJ));
1559603f58a4SSatish Balay   b->cowners = b->rowners + b->size + 2;
1560273d9f13SBarry Smith   ierr = MPI_Allgather(&B->m,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
156144cd7ae7SLois Curfman McInnes   b->rowners[0] = 0;
156244cd7ae7SLois Curfman McInnes   for (i=2; i<=b->size; i++) {
156344cd7ae7SLois Curfman McInnes     b->rowners[i] += b->rowners[i-1];
15648a729477SBarry Smith   }
156544cd7ae7SLois Curfman McInnes   b->rstart = b->rowners[b->rank];
156644cd7ae7SLois Curfman McInnes   b->rend   = b->rowners[b->rank+1];
1567273d9f13SBarry Smith   ierr = MPI_Allgather(&B->n,1,MPI_INT,b->cowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
156844cd7ae7SLois Curfman McInnes   b->cowners[0] = 0;
156944cd7ae7SLois Curfman McInnes   for (i=2; i<=b->size; i++) {
157044cd7ae7SLois Curfman McInnes     b->cowners[i] += b->cowners[i-1];
15718a729477SBarry Smith   }
157244cd7ae7SLois Curfman McInnes   b->cstart = b->cowners[b->rank];
157344cd7ae7SLois Curfman McInnes   b->cend   = b->cowners[b->rank+1];
15748a729477SBarry Smith 
15751eb62cbbSBarry Smith   /* build cache for off array entries formed */
15767e2c5f70SBarry Smith   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
15777c922b88SBarry Smith   b->donotstash  = PETSC_FALSE;
157844cd7ae7SLois Curfman McInnes   b->colmap      = 0;
157944cd7ae7SLois Curfman McInnes   b->garray      = 0;
15807c922b88SBarry Smith   b->roworiented = PETSC_TRUE;
15818a729477SBarry Smith 
15821eb62cbbSBarry Smith   /* stuff used for matrix vector multiply */
15837c922b88SBarry Smith   b->lvec      = PETSC_NULL;
15847c922b88SBarry Smith   b->Mvctx     = PETSC_NULL;
15858a729477SBarry Smith 
15867a0afa10SBarry Smith   /* stuff for MatGetRow() */
158744cd7ae7SLois Curfman McInnes   b->rowindices   = 0;
158844cd7ae7SLois Curfman McInnes   b->rowvalues    = 0;
158944cd7ae7SLois Curfman McInnes   b->getrowactive = PETSC_FALSE;
15901a8d6bc9SBarry Smith 
1591f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
15922e8a6d31SBarry Smith                                      "MatStoreValues_MPIAIJ",
15930c97f09dSSatish Balay                                      MatStoreValues_MPIAIJ);CHKERRQ(ierr);
1594f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
15952e8a6d31SBarry Smith                                      "MatRetrieveValues_MPIAIJ",
15960c97f09dSSatish Balay                                      MatRetrieveValues_MPIAIJ);CHKERRQ(ierr);
1597f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
15985ef9f2a5SBarry Smith                                      "MatGetDiagonalBlock_MPIAIJ",
15990c97f09dSSatish Balay                                      MatGetDiagonalBlock_MPIAIJ);CHKERRQ(ierr);
16009b9367d5SHong Zhang 
16013a40ed3dSBarry Smith   PetscFunctionReturn(0);
1602d6dfbf8fSBarry Smith }
1603273d9f13SBarry Smith EXTERN_C_END
1604c74985f6SBarry Smith 
16054a2ae208SSatish Balay #undef __FUNCT__
16064a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIAIJ"
16072e8a6d31SBarry Smith int MatDuplicate_MPIAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1608d6dfbf8fSBarry Smith {
1609d6dfbf8fSBarry Smith   Mat        mat;
1610416022c9SBarry Smith   Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ*)matin->data;
161116d6aa21SSatish Balay   int        ierr;
1612d6dfbf8fSBarry Smith 
16133a40ed3dSBarry Smith   PetscFunctionBegin;
1614416022c9SBarry Smith   *newmat       = 0;
1615273d9f13SBarry Smith   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
1616273d9f13SBarry Smith   ierr = MatSetType(mat,MATMPIAIJ);CHKERRQ(ierr);
1617273d9f13SBarry Smith   a    = (Mat_MPIAIJ*)mat->data;
1618549d3d68SSatish Balay   ierr              = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1619d6dfbf8fSBarry Smith   mat->factor       = matin->factor;
1620c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1621e7641de0SSatish Balay   mat->insertmode   = NOT_SET_VALUES;
1622273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
1623d6dfbf8fSBarry Smith 
1624416022c9SBarry Smith   a->rstart       = oldmat->rstart;
1625416022c9SBarry Smith   a->rend         = oldmat->rend;
1626416022c9SBarry Smith   a->cstart       = oldmat->cstart;
1627416022c9SBarry Smith   a->cend         = oldmat->cend;
162817699dbbSLois Curfman McInnes   a->size         = oldmat->size;
162917699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
1630e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
1631e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
1632e7641de0SSatish Balay   a->rowindices   = 0;
1633bcd2baecSBarry Smith   a->rowvalues    = 0;
1634bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
1635d6dfbf8fSBarry Smith 
1636549d3d68SSatish Balay   ierr       = PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int));CHKERRQ(ierr);
16378798bf22SSatish Balay   ierr       = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
16382ee70a88SLois Curfman McInnes   if (oldmat->colmap) {
1639aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
16400f5bd95cSBarry Smith     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
1641b1fc9764SSatish Balay #else
1642b0a32e0cSBarry Smith     ierr = PetscMalloc((mat->N)*sizeof(int),&a->colmap);CHKERRQ(ierr);
1643b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,(mat->N)*sizeof(int));
1644273d9f13SBarry Smith     ierr      = PetscMemcpy(a->colmap,oldmat->colmap,(mat->N)*sizeof(int));CHKERRQ(ierr);
1645b1fc9764SSatish Balay #endif
1646416022c9SBarry Smith   } else a->colmap = 0;
16473f41c07dSBarry Smith   if (oldmat->garray) {
164816d6aa21SSatish Balay     int len;
1649273d9f13SBarry Smith     len  = oldmat->B->n;
1650b0a32e0cSBarry Smith     ierr = PetscMalloc((len+1)*sizeof(int),&a->garray);CHKERRQ(ierr);
1651b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(int));
1652549d3d68SSatish Balay     if (len) { ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); }
1653416022c9SBarry Smith   } else a->garray = 0;
1654d6dfbf8fSBarry Smith 
1655416022c9SBarry Smith   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
1656b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
1657a56f8943SBarry Smith   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
1658b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
16592e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
1660b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
16612e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
1662b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
1663b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr);
16648a729477SBarry Smith   *newmat = mat;
16653a40ed3dSBarry Smith   PetscFunctionReturn(0);
16668a729477SBarry Smith }
1667416022c9SBarry Smith 
1668e090d566SSatish Balay #include "petscsys.h"
1669416022c9SBarry Smith 
1670273d9f13SBarry Smith EXTERN_C_BEGIN
16714a2ae208SSatish Balay #undef __FUNCT__
16724a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIAIJ"
1673b0a32e0cSBarry Smith int MatLoad_MPIAIJ(PetscViewer viewer,MatType type,Mat *newmat)
1674416022c9SBarry Smith {
1675d65a2f8fSBarry Smith   Mat          A;
167687828ca2SBarry Smith   PetscScalar  *vals,*svals;
167719bcc07fSBarry Smith   MPI_Comm     comm = ((PetscObject)viewer)->comm;
1678416022c9SBarry Smith   MPI_Status   status;
16793a40ed3dSBarry Smith   int          i,nz,ierr,j,rstart,rend,fd;
168017699dbbSLois Curfman McInnes   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols;
1681d65a2f8fSBarry Smith   int          *ourlens,*sndcounts = 0,*procsnz = 0,*offlens,jj,*mycols,*smycols;
1682b362ba68SBarry Smith   int          tag = ((PetscObject)viewer)->tag,cend,cstart,n;
1683416022c9SBarry Smith 
16843a40ed3dSBarry Smith   PetscFunctionBegin;
16851dab6e02SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
16861dab6e02SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
168717699dbbSLois Curfman McInnes   if (!rank) {
1688b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
16890752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
1690552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
1691d64ed03dSBarry Smith     if (header[3] < 0) {
169229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix in special format on disk, cannot load as MPIAIJ");
1693d64ed03dSBarry Smith     }
16946c5fab8fSBarry Smith   }
16956c5fab8fSBarry Smith 
1696ca161407SBarry Smith   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
1697416022c9SBarry Smith   M = header[1]; N = header[2];
1698416022c9SBarry Smith   /* determine ownership of all rows */
169917699dbbSLois Curfman McInnes   m = M/size + ((M % size) > rank);
1700b0a32e0cSBarry Smith   ierr = PetscMalloc((size+2)*sizeof(int),&rowners);CHKERRQ(ierr);
1701ca161407SBarry Smith   ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
1702416022c9SBarry Smith   rowners[0] = 0;
170317699dbbSLois Curfman McInnes   for (i=2; i<=size; i++) {
1704416022c9SBarry Smith     rowners[i] += rowners[i-1];
1705416022c9SBarry Smith   }
170617699dbbSLois Curfman McInnes   rstart = rowners[rank];
170717699dbbSLois Curfman McInnes   rend   = rowners[rank+1];
1708416022c9SBarry Smith 
1709416022c9SBarry Smith   /* distribute row lengths to all processors */
1710b0a32e0cSBarry Smith   ierr    = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&ourlens);CHKERRQ(ierr);
1711416022c9SBarry Smith   offlens = ourlens + (rend-rstart);
171217699dbbSLois Curfman McInnes   if (!rank) {
1713b0a32e0cSBarry Smith     ierr = PetscMalloc(M*sizeof(int),&rowlengths);CHKERRQ(ierr);
17140752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
1715b0a32e0cSBarry Smith     ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr);
171617699dbbSLois Curfman McInnes     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
1717ca161407SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr);
1718606d414cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
17193a40ed3dSBarry Smith   } else {
1720ca161407SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr);
1721416022c9SBarry Smith   }
1722416022c9SBarry Smith 
172317699dbbSLois Curfman McInnes   if (!rank) {
1724416022c9SBarry Smith     /* calculate the number of nonzeros on each processor */
1725b0a32e0cSBarry Smith     ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr);
1726549d3d68SSatish Balay     ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
172717699dbbSLois Curfman McInnes     for (i=0; i<size; i++) {
1728416022c9SBarry Smith       for (j=rowners[i]; j< rowners[i+1]; j++) {
1729416022c9SBarry Smith         procsnz[i] += rowlengths[j];
1730416022c9SBarry Smith       }
1731416022c9SBarry Smith     }
1732606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
1733416022c9SBarry Smith 
1734416022c9SBarry Smith     /* determine max buffer needed and allocate it */
1735416022c9SBarry Smith     maxnz = 0;
173617699dbbSLois Curfman McInnes     for (i=0; i<size; i++) {
17370452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
1738416022c9SBarry Smith     }
1739b0a32e0cSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr);
1740416022c9SBarry Smith 
1741416022c9SBarry Smith     /* read in my part of the matrix column indices  */
1742416022c9SBarry Smith     nz   = procsnz[0];
1743b0a32e0cSBarry Smith     ierr = PetscMalloc(nz*sizeof(int),&mycols);CHKERRQ(ierr);
17440752156aSBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
1745d65a2f8fSBarry Smith 
1746d65a2f8fSBarry Smith     /* read in every one elses and ship off */
174717699dbbSLois Curfman McInnes     for (i=1; i<size; i++) {
1748d65a2f8fSBarry Smith       nz   = procsnz[i];
17490752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
1750ca161407SBarry Smith       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
1751d65a2f8fSBarry Smith     }
1752606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
17533a40ed3dSBarry Smith   } else {
1754416022c9SBarry Smith     /* determine buffer space needed for message */
1755416022c9SBarry Smith     nz = 0;
1756416022c9SBarry Smith     for (i=0; i<m; i++) {
1757416022c9SBarry Smith       nz += ourlens[i];
1758416022c9SBarry Smith     }
1759b0a32e0cSBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(int),&mycols);CHKERRQ(ierr);
1760416022c9SBarry Smith 
1761416022c9SBarry Smith     /* receive message of column indices*/
1762ca161407SBarry Smith     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
1763ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
176429bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
1765416022c9SBarry Smith   }
1766416022c9SBarry Smith 
1767b362ba68SBarry Smith   /* determine column ownership if matrix is not square */
1768b362ba68SBarry Smith   if (N != M) {
1769b362ba68SBarry Smith     n      = N/size + ((N % size) > rank);
1770b362ba68SBarry Smith     ierr   = MPI_Scan(&n,&cend,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
1771b362ba68SBarry Smith     cstart = cend - n;
1772b362ba68SBarry Smith   } else {
1773b362ba68SBarry Smith     cstart = rstart;
1774b362ba68SBarry Smith     cend   = rend;
1775fb2e594dSBarry Smith     n      = cend - cstart;
1776b362ba68SBarry Smith   }
1777b362ba68SBarry Smith 
1778416022c9SBarry Smith   /* loop over local rows, determining number of off diagonal entries */
1779549d3d68SSatish Balay   ierr = PetscMemzero(offlens,m*sizeof(int));CHKERRQ(ierr);
1780416022c9SBarry Smith   jj = 0;
1781416022c9SBarry Smith   for (i=0; i<m; i++) {
1782416022c9SBarry Smith     for (j=0; j<ourlens[i]; j++) {
1783b362ba68SBarry Smith       if (mycols[jj] < cstart || mycols[jj] >= cend) offlens[i]++;
1784416022c9SBarry Smith       jj++;
1785416022c9SBarry Smith     }
1786416022c9SBarry Smith   }
1787d65a2f8fSBarry Smith 
1788d65a2f8fSBarry Smith   /* create our matrix */
1789416022c9SBarry Smith   for (i=0; i<m; i++) {
1790416022c9SBarry Smith     ourlens[i] -= offlens[i];
1791416022c9SBarry Smith   }
1792b362ba68SBarry Smith   ierr = MatCreateMPIAIJ(comm,m,n,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr);
1793d65a2f8fSBarry Smith   A = *newmat;
1794fb2e594dSBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
1795d65a2f8fSBarry Smith   for (i=0; i<m; i++) {
1796d65a2f8fSBarry Smith     ourlens[i] += offlens[i];
1797d65a2f8fSBarry Smith   }
1798416022c9SBarry Smith 
179917699dbbSLois Curfman McInnes   if (!rank) {
180087828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
1801416022c9SBarry Smith 
1802416022c9SBarry Smith     /* read in my part of the matrix numerical values  */
1803416022c9SBarry Smith     nz   = procsnz[0];
18040752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1805d65a2f8fSBarry Smith 
1806d65a2f8fSBarry Smith     /* insert into matrix */
1807d65a2f8fSBarry Smith     jj      = rstart;
1808d65a2f8fSBarry Smith     smycols = mycols;
1809d65a2f8fSBarry Smith     svals   = vals;
1810d65a2f8fSBarry Smith     for (i=0; i<m; i++) {
1811d65a2f8fSBarry Smith       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1812d65a2f8fSBarry Smith       smycols += ourlens[i];
1813d65a2f8fSBarry Smith       svals   += ourlens[i];
1814d65a2f8fSBarry Smith       jj++;
1815416022c9SBarry Smith     }
1816416022c9SBarry Smith 
1817d65a2f8fSBarry Smith     /* read in other processors and ship out */
181817699dbbSLois Curfman McInnes     for (i=1; i<size; i++) {
1819416022c9SBarry Smith       nz   = procsnz[i];
18200752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1821ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
1822416022c9SBarry Smith     }
1823606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
18243a40ed3dSBarry Smith   } else {
1825d65a2f8fSBarry Smith     /* receive numeric values */
182687828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
1827416022c9SBarry Smith 
1828d65a2f8fSBarry Smith     /* receive message of values*/
1829ca161407SBarry Smith     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
1830ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
183129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
1832d65a2f8fSBarry Smith 
1833d65a2f8fSBarry Smith     /* insert into matrix */
1834d65a2f8fSBarry Smith     jj      = rstart;
1835d65a2f8fSBarry Smith     smycols = mycols;
1836d65a2f8fSBarry Smith     svals   = vals;
1837d65a2f8fSBarry Smith     for (i=0; i<m; i++) {
1838d65a2f8fSBarry Smith       ierr     = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1839d65a2f8fSBarry Smith       smycols += ourlens[i];
1840d65a2f8fSBarry Smith       svals   += ourlens[i];
1841d65a2f8fSBarry Smith       jj++;
1842d65a2f8fSBarry Smith     }
1843d65a2f8fSBarry Smith   }
1844606d414cSSatish Balay   ierr = PetscFree(ourlens);CHKERRQ(ierr);
1845606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
1846606d414cSSatish Balay   ierr = PetscFree(mycols);CHKERRQ(ierr);
1847606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
1848d65a2f8fSBarry Smith 
18496d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18506d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18513a40ed3dSBarry Smith   PetscFunctionReturn(0);
1852416022c9SBarry Smith }
1853273d9f13SBarry Smith EXTERN_C_END
1854a0ff6018SBarry Smith 
18554a2ae208SSatish Balay #undef __FUNCT__
18564a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIAIJ"
1857a0ff6018SBarry Smith /*
185829da9460SBarry Smith     Not great since it makes two copies of the submatrix, first an SeqAIJ
185929da9460SBarry Smith   in local and then by concatenating the local matrices the end result.
186029da9460SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIAIJ()
1861a0ff6018SBarry Smith */
18627b2a1423SBarry Smith int MatGetSubMatrix_MPIAIJ(Mat mat,IS isrow,IS iscol,int csize,MatReuse call,Mat *newmat)
1863a0ff6018SBarry Smith {
186400e6dbe6SBarry Smith   int          ierr,i,m,n,rstart,row,rend,nz,*cwork,size,rank,j;
1865ab50ec6bSBarry Smith   int          *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal;
1866fee21e36SBarry Smith   Mat          *local,M,Mreuse;
186787828ca2SBarry Smith   PetscScalar  *vwork,*aa;
186800e6dbe6SBarry Smith   MPI_Comm     comm = mat->comm;
186900e6dbe6SBarry Smith   Mat_SeqAIJ   *aij;
18707e2c5f70SBarry Smith 
1871a0ff6018SBarry Smith 
1872a0ff6018SBarry Smith   PetscFunctionBegin;
18731dab6e02SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
18741dab6e02SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
187500e6dbe6SBarry Smith 
1876fee21e36SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
1877fee21e36SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr);
187829bbc08cSBarry Smith     if (!Mreuse) SETERRQ(1,"Submatrix passed in was not used before, cannot reuse");
1879fee21e36SBarry Smith     local = &Mreuse;
1880fee21e36SBarry Smith     ierr  = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr);
1881fee21e36SBarry Smith   } else {
1882a0ff6018SBarry Smith     ierr   = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr);
1883fee21e36SBarry Smith     Mreuse = *local;
1884606d414cSSatish Balay     ierr   = PetscFree(local);CHKERRQ(ierr);
1885fee21e36SBarry Smith   }
1886a0ff6018SBarry Smith 
1887a0ff6018SBarry Smith   /*
1888a0ff6018SBarry Smith       m - number of local rows
1889a0ff6018SBarry Smith       n - number of columns (same on all processors)
1890a0ff6018SBarry Smith       rstart - first row in new global matrix generated
1891a0ff6018SBarry Smith   */
1892fee21e36SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
1893a0ff6018SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
1894fee21e36SBarry Smith     aij = (Mat_SeqAIJ*)(Mreuse)->data;
189529bbc08cSBarry Smith     if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,"No support for index shifted matrix");
189600e6dbe6SBarry Smith     ii  = aij->i;
189700e6dbe6SBarry Smith     jj  = aij->j;
189800e6dbe6SBarry Smith 
1899a0ff6018SBarry Smith     /*
190000e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
190100e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
1902a0ff6018SBarry Smith     */
190300e6dbe6SBarry Smith 
190400e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
19056a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
1906ab50ec6bSBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
1907ab50ec6bSBarry Smith       if (mglobal == n) { /* square matrix */
1908e2c4fddaSBarry Smith 	nlocal = m;
19096a6a5d1dSBarry Smith       } else {
1910ab50ec6bSBarry Smith         nlocal = n/size + ((n % size) > rank);
1911ab50ec6bSBarry Smith       }
1912ab50ec6bSBarry Smith     } else {
19136a6a5d1dSBarry Smith       nlocal = csize;
19146a6a5d1dSBarry Smith     }
1915ca161407SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
191600e6dbe6SBarry Smith     rstart = rend - nlocal;
19176a6a5d1dSBarry Smith     if (rank == size - 1 && rend != n) {
191829bbc08cSBarry Smith       SETERRQ(1,"Local column sizes do not add up to total number of columns");
19196a6a5d1dSBarry Smith     }
192000e6dbe6SBarry Smith 
192100e6dbe6SBarry Smith     /* next, compute all the lengths */
1922b0a32e0cSBarry Smith     ierr  = PetscMalloc((2*m+1)*sizeof(int),&dlens);CHKERRQ(ierr);
192300e6dbe6SBarry Smith     olens = dlens + m;
192400e6dbe6SBarry Smith     for (i=0; i<m; i++) {
192500e6dbe6SBarry Smith       jend = ii[i+1] - ii[i];
192600e6dbe6SBarry Smith       olen = 0;
192700e6dbe6SBarry Smith       dlen = 0;
192800e6dbe6SBarry Smith       for (j=0; j<jend; j++) {
192900e6dbe6SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
193000e6dbe6SBarry Smith         else dlen++;
193100e6dbe6SBarry Smith         jj++;
193200e6dbe6SBarry Smith       }
193300e6dbe6SBarry Smith       olens[i] = olen;
193400e6dbe6SBarry Smith       dlens[i] = dlen;
193500e6dbe6SBarry Smith     }
19362d207970SBarry Smith     ierr = MatCreateMPIAIJ(comm,m,nlocal,PETSC_DECIDE,n,0,dlens,0,olens,&M);CHKERRQ(ierr);
1937606d414cSSatish Balay     ierr = PetscFree(dlens);CHKERRQ(ierr);
1938a0ff6018SBarry Smith   } else {
1939a0ff6018SBarry Smith     int ml,nl;
1940a0ff6018SBarry Smith 
1941a0ff6018SBarry Smith     M = *newmat;
1942a0ff6018SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
194329bbc08cSBarry Smith     if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
1944a0ff6018SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
1945c48de900SBarry Smith     /*
1946c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
1947c48de900SBarry Smith        rather than the slower MatSetValues().
1948c48de900SBarry Smith     */
1949c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
1950c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
1951a0ff6018SBarry Smith   }
1952a0ff6018SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
1953fee21e36SBarry Smith   aij = (Mat_SeqAIJ*)(Mreuse)->data;
195429bbc08cSBarry Smith   if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,"No support for index shifted matrix");
195500e6dbe6SBarry Smith   ii  = aij->i;
195600e6dbe6SBarry Smith   jj  = aij->j;
195700e6dbe6SBarry Smith   aa  = aij->a;
1958a0ff6018SBarry Smith   for (i=0; i<m; i++) {
1959a0ff6018SBarry Smith     row   = rstart + i;
196000e6dbe6SBarry Smith     nz    = ii[i+1] - ii[i];
196100e6dbe6SBarry Smith     cwork = jj;     jj += nz;
196200e6dbe6SBarry Smith     vwork = aa;     aa += nz;
19638c638d02SBarry Smith     ierr = MatSetValues_MPIAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
1964a0ff6018SBarry Smith   }
1965a0ff6018SBarry Smith 
1966a0ff6018SBarry Smith   ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1967a0ff6018SBarry Smith   ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1968a0ff6018SBarry Smith   *newmat = M;
1969fee21e36SBarry Smith 
1970fee21e36SBarry Smith   /* save submatrix used in processor for next request */
1971fee21e36SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
1972fee21e36SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
1973fee21e36SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
1974fee21e36SBarry Smith   }
1975fee21e36SBarry Smith 
1976a0ff6018SBarry Smith   PetscFunctionReturn(0);
1977a0ff6018SBarry Smith }
1978273d9f13SBarry Smith 
19794a2ae208SSatish Balay #undef __FUNCT__
19804a2ae208SSatish Balay #define __FUNCT__ "MatMPIAIJSetPreallocation"
1981273d9f13SBarry Smith /*@C
1982273d9f13SBarry Smith    MatMPIAIJSetPreallocation - Creates a sparse parallel matrix in AIJ format
1983273d9f13SBarry Smith    (the default parallel PETSc format).  For good matrix assembly performance
1984273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
1985273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1986273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
1987273d9f13SBarry Smith 
1988273d9f13SBarry Smith    Collective on MPI_Comm
1989273d9f13SBarry Smith 
1990273d9f13SBarry Smith    Input Parameters:
1991273d9f13SBarry Smith +  A - the matrix
1992273d9f13SBarry Smith .  d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
1993273d9f13SBarry Smith            (same value is used for all local rows)
1994273d9f13SBarry Smith .  d_nnz - array containing the number of nonzeros in the various rows of the
1995273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
1996273d9f13SBarry Smith            or PETSC_NULL, if d_nz is used to specify the nonzero structure.
1997273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
1998273d9f13SBarry Smith            You must leave room for the diagonal entry even if it is zero.
1999273d9f13SBarry Smith .  o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
2000273d9f13SBarry Smith            submatrix (same value is used for all local rows).
2001273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various rows of the
2002273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
2003273d9f13SBarry Smith            each row) or PETSC_NULL, if o_nz is used to specify the nonzero
2004273d9f13SBarry Smith            structure. The size of this array is equal to the number
2005273d9f13SBarry Smith            of local rows, i.e 'm'.
2006273d9f13SBarry Smith 
2007273d9f13SBarry Smith    The AIJ format (also called the Yale sparse matrix format or
2008273d9f13SBarry Smith    compressed row storage), is fully compatible with standard Fortran 77
2009273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
2010273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users manual for details.
2011273d9f13SBarry Smith 
2012273d9f13SBarry Smith    The user MUST specify either the local or global matrix dimensions
2013273d9f13SBarry Smith    (possibly both).
2014273d9f13SBarry Smith 
2015273d9f13SBarry Smith    The parallel matrix is partitioned such that the first m0 rows belong to
2016273d9f13SBarry Smith    process 0, the next m1 rows belong to process 1, the next m2 rows belong
2017273d9f13SBarry Smith    to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
2018273d9f13SBarry Smith 
2019273d9f13SBarry Smith    The DIAGONAL portion of the local submatrix of a processor can be defined
2020273d9f13SBarry Smith    as the submatrix which is obtained by extraction the part corresponding
2021273d9f13SBarry Smith    to the rows r1-r2 and columns r1-r2 of the global matrix, where r1 is the
2022273d9f13SBarry Smith    first row that belongs to the processor, and r2 is the last row belonging
2023273d9f13SBarry Smith    to the this processor. This is a square mxm matrix. The remaining portion
2024273d9f13SBarry Smith    of the local submatrix (mxN) constitute the OFF-DIAGONAL portion.
2025273d9f13SBarry Smith 
2026273d9f13SBarry Smith    If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored.
2027273d9f13SBarry Smith 
2028273d9f13SBarry Smith    By default, this format uses inodes (identical nodes) when possible.
2029273d9f13SBarry Smith    We search for consecutive rows with the same nonzero structure, thereby
2030273d9f13SBarry Smith    reusing matrix information to achieve increased efficiency.
2031273d9f13SBarry Smith 
2032273d9f13SBarry Smith    Options Database Keys:
2033273d9f13SBarry Smith +  -mat_aij_no_inode  - Do not use inodes
2034273d9f13SBarry Smith .  -mat_aij_inode_limit <limit> - Sets inode limit (max limit=5)
2035273d9f13SBarry Smith -  -mat_aij_oneindex - Internally use indexing starting at 1
2036273d9f13SBarry Smith         rather than 0.  Note that when calling MatSetValues(),
2037273d9f13SBarry Smith         the user still MUST index entries starting at 0!
2038273d9f13SBarry Smith 
2039273d9f13SBarry Smith    Example usage:
2040273d9f13SBarry Smith 
2041273d9f13SBarry Smith    Consider the following 8x8 matrix with 34 non-zero values, that is
2042273d9f13SBarry Smith    assembled across 3 processors. Lets assume that proc0 owns 3 rows,
2043273d9f13SBarry Smith    proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
2044273d9f13SBarry Smith    as follows:
2045273d9f13SBarry Smith 
2046273d9f13SBarry Smith .vb
2047273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
2048273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
2049273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
2050273d9f13SBarry Smith     -------------------------------------
2051273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
2052273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
2053273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
2054273d9f13SBarry Smith     -------------------------------------
2055273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
2056273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
2057273d9f13SBarry Smith .ve
2058273d9f13SBarry Smith 
2059273d9f13SBarry Smith    This can be represented as a collection of submatrices as:
2060273d9f13SBarry Smith 
2061273d9f13SBarry Smith .vb
2062273d9f13SBarry Smith       A B C
2063273d9f13SBarry Smith       D E F
2064273d9f13SBarry Smith       G H I
2065273d9f13SBarry Smith .ve
2066273d9f13SBarry Smith 
2067273d9f13SBarry Smith    Where the submatrices A,B,C are owned by proc0, D,E,F are
2068273d9f13SBarry Smith    owned by proc1, G,H,I are owned by proc2.
2069273d9f13SBarry Smith 
2070273d9f13SBarry Smith    The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2071273d9f13SBarry Smith    The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2072273d9f13SBarry Smith    The 'M','N' parameters are 8,8, and have the same values on all procs.
2073273d9f13SBarry Smith 
2074273d9f13SBarry Smith    The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
2075273d9f13SBarry Smith    submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
2076273d9f13SBarry Smith    corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
2077273d9f13SBarry Smith    Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
2078273d9f13SBarry Smith    part as SeqAIJ matrices. for eg: proc1 will store [E] as a SeqAIJ
2079273d9f13SBarry Smith    matrix, ans [DF] as another SeqAIJ matrix.
2080273d9f13SBarry Smith 
2081273d9f13SBarry Smith    When d_nz, o_nz parameters are specified, d_nz storage elements are
2082273d9f13SBarry Smith    allocated for every row of the local diagonal submatrix, and o_nz
2083273d9f13SBarry Smith    storage locations are allocated for every row of the OFF-DIAGONAL submat.
2084273d9f13SBarry Smith    One way to choose d_nz and o_nz is to use the max nonzerors per local
2085273d9f13SBarry Smith    rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
2086273d9f13SBarry Smith    In this case, the values of d_nz,o_nz are:
2087273d9f13SBarry Smith .vb
2088273d9f13SBarry Smith      proc0 : dnz = 2, o_nz = 2
2089273d9f13SBarry Smith      proc1 : dnz = 3, o_nz = 2
2090273d9f13SBarry Smith      proc2 : dnz = 1, o_nz = 4
2091273d9f13SBarry Smith .ve
2092273d9f13SBarry Smith    We are allocating m*(d_nz+o_nz) storage locations for every proc. This
2093273d9f13SBarry Smith    translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
2094273d9f13SBarry Smith    for proc3. i.e we are using 12+15+10=37 storage locations to store
2095273d9f13SBarry Smith    34 values.
2096273d9f13SBarry Smith 
2097273d9f13SBarry Smith    When d_nnz, o_nnz parameters are specified, the storage is specified
2098273d9f13SBarry Smith    for every row, coresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
2099273d9f13SBarry Smith    In the above case the values for d_nnz,o_nnz are:
2100273d9f13SBarry Smith .vb
2101273d9f13SBarry Smith      proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2]
2102273d9f13SBarry Smith      proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1]
2103273d9f13SBarry Smith      proc2: d_nnz = [1,1]   and o_nnz = [4,4]
2104273d9f13SBarry Smith .ve
2105273d9f13SBarry Smith    Here the space allocated is sum of all the above values i.e 34, and
2106273d9f13SBarry Smith    hence pre-allocation is perfect.
2107273d9f13SBarry Smith 
2108273d9f13SBarry Smith    Level: intermediate
2109273d9f13SBarry Smith 
2110273d9f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2111273d9f13SBarry Smith 
2112273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
2113273d9f13SBarry Smith @*/
2114273d9f13SBarry Smith int MatMPIAIJSetPreallocation(Mat B,int d_nz,int *d_nnz,int o_nz,int *o_nnz)
2115273d9f13SBarry Smith {
2116273d9f13SBarry Smith   Mat_MPIAIJ   *b;
2117273d9f13SBarry Smith   int          ierr,i;
2118273d9f13SBarry Smith   PetscTruth   flg2;
2119273d9f13SBarry Smith 
2120273d9f13SBarry Smith   PetscFunctionBegin;
2121273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPIAIJ,&flg2);CHKERRQ(ierr);
2122273d9f13SBarry Smith   if (!flg2) PetscFunctionReturn(0);
2123273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
2124435da068SBarry Smith   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2125435da068SBarry Smith   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
2126435da068SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz);
2127435da068SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz);
2128273d9f13SBarry Smith   if (d_nnz) {
2129273d9f13SBarry Smith     for (i=0; i<B->m; i++) {
2130273d9f13SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %d value %d",i,d_nnz[i]);
2131273d9f13SBarry Smith     }
2132273d9f13SBarry Smith   }
2133273d9f13SBarry Smith   if (o_nnz) {
2134273d9f13SBarry Smith     for (i=0; i<B->m; i++) {
2135273d9f13SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %d value %d",i,o_nnz[i]);
2136273d9f13SBarry Smith     }
2137273d9f13SBarry Smith   }
2138273d9f13SBarry Smith   b = (Mat_MPIAIJ*)B->data;
2139273d9f13SBarry Smith 
2140273d9f13SBarry Smith   ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,B->m,B->n,d_nz,d_nnz,&b->A);CHKERRQ(ierr);
2141b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->A);
2142273d9f13SBarry Smith   ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,B->m,B->N,o_nz,o_nnz,&b->B);CHKERRQ(ierr);
2143b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->B);
2144273d9f13SBarry Smith 
2145273d9f13SBarry Smith   PetscFunctionReturn(0);
2146273d9f13SBarry Smith }
2147273d9f13SBarry Smith 
21484a2ae208SSatish Balay #undef __FUNCT__
21494a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIAIJ"
2150273d9f13SBarry Smith /*@C
2151273d9f13SBarry Smith    MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format
2152273d9f13SBarry Smith    (the default parallel PETSc format).  For good matrix assembly performance
2153273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2154273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2155273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2156273d9f13SBarry Smith 
2157273d9f13SBarry Smith    Collective on MPI_Comm
2158273d9f13SBarry Smith 
2159273d9f13SBarry Smith    Input Parameters:
2160273d9f13SBarry Smith +  comm - MPI communicator
2161273d9f13SBarry Smith .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2162273d9f13SBarry Smith            This value should be the same as the local size used in creating the
2163273d9f13SBarry Smith            y vector for the matrix-vector product y = Ax.
2164273d9f13SBarry Smith .  n - This value should be the same as the local size used in creating the
2165273d9f13SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2166273d9f13SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2167273d9f13SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2168273d9f13SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2169273d9f13SBarry Smith .  d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
2170273d9f13SBarry Smith            (same value is used for all local rows)
2171273d9f13SBarry Smith .  d_nnz - array containing the number of nonzeros in the various rows of the
2172273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
2173273d9f13SBarry Smith            or PETSC_NULL, if d_nz is used to specify the nonzero structure.
2174273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
2175273d9f13SBarry Smith            You must leave room for the diagonal entry even if it is zero.
2176273d9f13SBarry Smith .  o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
2177273d9f13SBarry Smith            submatrix (same value is used for all local rows).
2178273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various rows of the
2179273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
2180273d9f13SBarry Smith            each row) or PETSC_NULL, if o_nz is used to specify the nonzero
2181273d9f13SBarry Smith            structure. The size of this array is equal to the number
2182273d9f13SBarry Smith            of local rows, i.e 'm'.
2183273d9f13SBarry Smith 
2184273d9f13SBarry Smith    Output Parameter:
2185273d9f13SBarry Smith .  A - the matrix
2186273d9f13SBarry Smith 
2187273d9f13SBarry Smith    Notes:
2188273d9f13SBarry Smith    m,n,M,N parameters specify the size of the matrix, and its partitioning across
2189273d9f13SBarry Smith    processors, while d_nz,d_nnz,o_nz,o_nnz parameters specify the approximate
2190273d9f13SBarry Smith    storage requirements for this matrix.
2191273d9f13SBarry Smith 
2192273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one
2193273d9f13SBarry Smith    processor than it must be used on all processors that share the object for
2194273d9f13SBarry Smith    that argument.
2195273d9f13SBarry Smith 
2196273d9f13SBarry Smith    The AIJ format (also called the Yale sparse matrix format or
2197273d9f13SBarry Smith    compressed row storage), is fully compatible with standard Fortran 77
2198273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
2199273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users manual for details.
2200273d9f13SBarry Smith 
2201273d9f13SBarry Smith    The user MUST specify either the local or global matrix dimensions
2202273d9f13SBarry Smith    (possibly both).
2203273d9f13SBarry Smith 
2204273d9f13SBarry Smith    The parallel matrix is partitioned such that the first m0 rows belong to
2205273d9f13SBarry Smith    process 0, the next m1 rows belong to process 1, the next m2 rows belong
2206273d9f13SBarry Smith    to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
2207273d9f13SBarry Smith 
2208273d9f13SBarry Smith    The DIAGONAL portion of the local submatrix of a processor can be defined
2209273d9f13SBarry Smith    as the submatrix which is obtained by extraction the part corresponding
2210273d9f13SBarry Smith    to the rows r1-r2 and columns r1-r2 of the global matrix, where r1 is the
2211273d9f13SBarry Smith    first row that belongs to the processor, and r2 is the last row belonging
2212273d9f13SBarry Smith    to the this processor. This is a square mxm matrix. The remaining portion
2213273d9f13SBarry Smith    of the local submatrix (mxN) constitute the OFF-DIAGONAL portion.
2214273d9f13SBarry Smith 
2215273d9f13SBarry Smith    If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored.
2216273d9f13SBarry Smith 
2217273d9f13SBarry Smith    By default, this format uses inodes (identical nodes) when possible.
2218273d9f13SBarry Smith    We search for consecutive rows with the same nonzero structure, thereby
2219273d9f13SBarry Smith    reusing matrix information to achieve increased efficiency.
2220273d9f13SBarry Smith 
2221273d9f13SBarry Smith    Options Database Keys:
2222273d9f13SBarry Smith +  -mat_aij_no_inode  - Do not use inodes
2223273d9f13SBarry Smith .  -mat_aij_inode_limit <limit> - Sets inode limit (max limit=5)
2224273d9f13SBarry Smith -  -mat_aij_oneindex - Internally use indexing starting at 1
2225273d9f13SBarry Smith         rather than 0.  Note that when calling MatSetValues(),
2226273d9f13SBarry Smith         the user still MUST index entries starting at 0!
2227273d9f13SBarry Smith 
2228273d9f13SBarry Smith 
2229273d9f13SBarry Smith    Example usage:
2230273d9f13SBarry Smith 
2231273d9f13SBarry Smith    Consider the following 8x8 matrix with 34 non-zero values, that is
2232273d9f13SBarry Smith    assembled across 3 processors. Lets assume that proc0 owns 3 rows,
2233273d9f13SBarry Smith    proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
2234273d9f13SBarry Smith    as follows:
2235273d9f13SBarry Smith 
2236273d9f13SBarry Smith .vb
2237273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
2238273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
2239273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
2240273d9f13SBarry Smith     -------------------------------------
2241273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
2242273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
2243273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
2244273d9f13SBarry Smith     -------------------------------------
2245273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
2246273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
2247273d9f13SBarry Smith .ve
2248273d9f13SBarry Smith 
2249273d9f13SBarry Smith    This can be represented as a collection of submatrices as:
2250273d9f13SBarry Smith 
2251273d9f13SBarry Smith .vb
2252273d9f13SBarry Smith       A B C
2253273d9f13SBarry Smith       D E F
2254273d9f13SBarry Smith       G H I
2255273d9f13SBarry Smith .ve
2256273d9f13SBarry Smith 
2257273d9f13SBarry Smith    Where the submatrices A,B,C are owned by proc0, D,E,F are
2258273d9f13SBarry Smith    owned by proc1, G,H,I are owned by proc2.
2259273d9f13SBarry Smith 
2260273d9f13SBarry Smith    The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2261273d9f13SBarry Smith    The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2262273d9f13SBarry Smith    The 'M','N' parameters are 8,8, and have the same values on all procs.
2263273d9f13SBarry Smith 
2264273d9f13SBarry Smith    The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
2265273d9f13SBarry Smith    submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
2266273d9f13SBarry Smith    corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
2267273d9f13SBarry Smith    Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
2268273d9f13SBarry Smith    part as SeqAIJ matrices. for eg: proc1 will store [E] as a SeqAIJ
2269273d9f13SBarry Smith    matrix, ans [DF] as another SeqAIJ matrix.
2270273d9f13SBarry Smith 
2271273d9f13SBarry Smith    When d_nz, o_nz parameters are specified, d_nz storage elements are
2272273d9f13SBarry Smith    allocated for every row of the local diagonal submatrix, and o_nz
2273273d9f13SBarry Smith    storage locations are allocated for every row of the OFF-DIAGONAL submat.
2274273d9f13SBarry Smith    One way to choose d_nz and o_nz is to use the max nonzerors per local
2275273d9f13SBarry Smith    rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
2276273d9f13SBarry Smith    In this case, the values of d_nz,o_nz are:
2277273d9f13SBarry Smith .vb
2278273d9f13SBarry Smith      proc0 : dnz = 2, o_nz = 2
2279273d9f13SBarry Smith      proc1 : dnz = 3, o_nz = 2
2280273d9f13SBarry Smith      proc2 : dnz = 1, o_nz = 4
2281273d9f13SBarry Smith .ve
2282273d9f13SBarry Smith    We are allocating m*(d_nz+o_nz) storage locations for every proc. This
2283273d9f13SBarry Smith    translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
2284273d9f13SBarry Smith    for proc3. i.e we are using 12+15+10=37 storage locations to store
2285273d9f13SBarry Smith    34 values.
2286273d9f13SBarry Smith 
2287273d9f13SBarry Smith    When d_nnz, o_nnz parameters are specified, the storage is specified
2288273d9f13SBarry Smith    for every row, coresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
2289273d9f13SBarry Smith    In the above case the values for d_nnz,o_nnz are:
2290273d9f13SBarry Smith .vb
2291273d9f13SBarry Smith      proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2]
2292273d9f13SBarry Smith      proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1]
2293273d9f13SBarry Smith      proc2: d_nnz = [1,1]   and o_nnz = [4,4]
2294273d9f13SBarry Smith .ve
2295273d9f13SBarry Smith    Here the space allocated is sum of all the above values i.e 34, and
2296273d9f13SBarry Smith    hence pre-allocation is perfect.
2297273d9f13SBarry Smith 
2298273d9f13SBarry Smith    Level: intermediate
2299273d9f13SBarry Smith 
2300273d9f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2301273d9f13SBarry Smith 
2302273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
2303273d9f13SBarry Smith @*/
2304273d9f13SBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
2305273d9f13SBarry Smith {
2306273d9f13SBarry Smith   int ierr,size;
2307273d9f13SBarry Smith 
2308273d9f13SBarry Smith   PetscFunctionBegin;
2309273d9f13SBarry Smith   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
2310273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2311273d9f13SBarry Smith   if (size > 1) {
2312273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIAIJ);CHKERRQ(ierr);
2313273d9f13SBarry Smith     ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2314273d9f13SBarry Smith   } else {
2315273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQAIJ);CHKERRQ(ierr);
2316273d9f13SBarry Smith     ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr);
2317273d9f13SBarry Smith   }
2318273d9f13SBarry Smith   PetscFunctionReturn(0);
2319273d9f13SBarry Smith }
2320195d93cdSBarry Smith 
23214a2ae208SSatish Balay #undef __FUNCT__
23224a2ae208SSatish Balay #define __FUNCT__ "MatMPIAIJGetSeqAIJ"
2323195d93cdSBarry Smith int MatMPIAIJGetSeqAIJ(Mat A,Mat *Ad,Mat *Ao,int **colmap)
2324195d93cdSBarry Smith {
2325195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2326195d93cdSBarry Smith   PetscFunctionBegin;
2327195d93cdSBarry Smith   *Ad     = a->A;
2328195d93cdSBarry Smith   *Ao     = a->B;
2329195d93cdSBarry Smith   *colmap = a->garray;
2330195d93cdSBarry Smith   PetscFunctionReturn(0);
2331195d93cdSBarry Smith }
2332a2243be0SBarry Smith 
2333a2243be0SBarry Smith #undef __FUNCT__
2334a2243be0SBarry Smith #define __FUNCT__ "MatSetColoring_MPIAIJ"
2335a2243be0SBarry Smith int MatSetColoring_MPIAIJ(Mat A,ISColoring coloring)
2336a2243be0SBarry Smith {
2337a2243be0SBarry Smith   int        ierr;
2338a2243be0SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
2339a2243be0SBarry Smith 
2340a2243be0SBarry Smith   PetscFunctionBegin;
2341a2243be0SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
2342a2243be0SBarry Smith     int        *allcolors,*colors,i;
2343a2243be0SBarry Smith     ISColoring ocoloring;
2344a2243be0SBarry Smith 
2345a2243be0SBarry Smith     /* set coloring for diagonal portion */
2346a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->A,coloring);CHKERRQ(ierr);
2347a2243be0SBarry Smith 
2348a2243be0SBarry Smith     /* set coloring for off-diagonal portion */
2349a2243be0SBarry Smith     ierr = ISAllGatherIndices(A->comm,coloring->n,coloring->colors,PETSC_NULL,&allcolors);CHKERRQ(ierr);
2350a2243be0SBarry Smith     ierr = PetscMalloc((a->B->n+1)*sizeof(int),&colors);CHKERRQ(ierr);
2351a2243be0SBarry Smith     for (i=0; i<a->B->n; i++) {
2352a2243be0SBarry Smith       colors[i] = allcolors[a->garray[i]];
2353a2243be0SBarry Smith     }
2354a2243be0SBarry Smith     ierr = PetscFree(allcolors);CHKERRQ(ierr);
2355a2243be0SBarry Smith     ierr = ISColoringCreate(MPI_COMM_SELF,a->B->n,colors,&ocoloring);CHKERRQ(ierr);
2356a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->B,ocoloring);CHKERRQ(ierr);
2357a2243be0SBarry Smith     ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr);
2358a2243be0SBarry Smith   } else if (coloring->ctype == IS_COLORING_GHOSTED) {
2359a2243be0SBarry Smith     int        *colors,i,*larray;
2360a2243be0SBarry Smith     ISColoring ocoloring;
2361a2243be0SBarry Smith 
2362a2243be0SBarry Smith     /* set coloring for diagonal portion */
2363a2243be0SBarry Smith     ierr = PetscMalloc((a->A->n+1)*sizeof(int),&larray);CHKERRQ(ierr);
2364a2243be0SBarry Smith     for (i=0; i<a->A->n; i++) {
2365a2243be0SBarry Smith       larray[i] = i + a->cstart;
2366a2243be0SBarry Smith     }
2367a2243be0SBarry Smith     ierr = ISGlobalToLocalMappingApply(A->mapping,IS_GTOLM_MASK,a->A->n,larray,PETSC_NULL,larray);CHKERRQ(ierr);
2368a2243be0SBarry Smith     ierr = PetscMalloc((a->A->n+1)*sizeof(int),&colors);CHKERRQ(ierr);
2369a2243be0SBarry Smith     for (i=0; i<a->A->n; i++) {
2370a2243be0SBarry Smith       colors[i] = coloring->colors[larray[i]];
2371a2243be0SBarry Smith     }
2372a2243be0SBarry Smith     ierr = PetscFree(larray);CHKERRQ(ierr);
237312c595b3SBarry Smith     ierr = ISColoringCreate(PETSC_COMM_SELF,a->A->n,colors,&ocoloring);CHKERRQ(ierr);
2374a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->A,ocoloring);CHKERRQ(ierr);
2375a2243be0SBarry Smith     ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr);
2376a2243be0SBarry Smith 
2377a2243be0SBarry Smith     /* set coloring for off-diagonal portion */
2378a2243be0SBarry Smith     ierr = PetscMalloc((a->B->n+1)*sizeof(int),&larray);CHKERRQ(ierr);
2379a2243be0SBarry Smith     ierr = ISGlobalToLocalMappingApply(A->mapping,IS_GTOLM_MASK,a->B->n,a->garray,PETSC_NULL,larray);CHKERRQ(ierr);
2380a2243be0SBarry Smith     ierr = PetscMalloc((a->B->n+1)*sizeof(int),&colors);CHKERRQ(ierr);
2381a2243be0SBarry Smith     for (i=0; i<a->B->n; i++) {
2382a2243be0SBarry Smith       colors[i] = coloring->colors[larray[i]];
2383a2243be0SBarry Smith     }
2384a2243be0SBarry Smith     ierr = PetscFree(larray);CHKERRQ(ierr);
2385a2243be0SBarry Smith     ierr = ISColoringCreate(MPI_COMM_SELF,a->B->n,colors,&ocoloring);CHKERRQ(ierr);
2386a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->B,ocoloring);CHKERRQ(ierr);
2387a2243be0SBarry Smith     ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr);
2388a2243be0SBarry Smith   } else {
2389a2243be0SBarry Smith     SETERRQ1(1,"No support ISColoringType %d",coloring->ctype);
2390a2243be0SBarry Smith   }
2391a2243be0SBarry Smith 
2392a2243be0SBarry Smith   PetscFunctionReturn(0);
2393a2243be0SBarry Smith }
2394a2243be0SBarry Smith 
2395a2243be0SBarry Smith #undef __FUNCT__
2396779c1a83SBarry Smith #define __FUNCT__ "MatSetValuesAdic_MPIAIJ"
2397779c1a83SBarry Smith int MatSetValuesAdic_MPIAIJ(Mat A,void *advalues)
2398a2243be0SBarry Smith {
2399a2243be0SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
2400a2243be0SBarry Smith   int        ierr;
2401a2243be0SBarry Smith 
2402a2243be0SBarry Smith   PetscFunctionBegin;
2403779c1a83SBarry Smith   ierr = MatSetValuesAdic_SeqAIJ(a->A,advalues);CHKERRQ(ierr);
2404779c1a83SBarry Smith   ierr = MatSetValuesAdic_SeqAIJ(a->B,advalues);CHKERRQ(ierr);
2405779c1a83SBarry Smith   PetscFunctionReturn(0);
2406779c1a83SBarry Smith }
2407779c1a83SBarry Smith 
2408779c1a83SBarry Smith #undef __FUNCT__
2409779c1a83SBarry Smith #define __FUNCT__ "MatSetValuesAdifor_MPIAIJ"
2410779c1a83SBarry Smith int MatSetValuesAdifor_MPIAIJ(Mat A,int nl,void *advalues)
2411779c1a83SBarry Smith {
2412779c1a83SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
2413779c1a83SBarry Smith   int        ierr;
2414779c1a83SBarry Smith 
2415779c1a83SBarry Smith   PetscFunctionBegin;
2416779c1a83SBarry Smith   ierr = MatSetValuesAdifor_SeqAIJ(a->A,nl,advalues);CHKERRQ(ierr);
2417779c1a83SBarry Smith   ierr = MatSetValuesAdifor_SeqAIJ(a->B,nl,advalues);CHKERRQ(ierr);
2418a2243be0SBarry Smith   PetscFunctionReturn(0);
2419a2243be0SBarry Smith }
2420c5d6d63eSBarry Smith 
2421c5d6d63eSBarry Smith #undef __FUNCT__
2422c5d6d63eSBarry Smith #define __FUNCT__ "MatFileMerge"
2423c5d6d63eSBarry Smith /*@C
2424c5d6d63eSBarry Smith       MatFileMerge - Saves a single large PETSc matrix by reading in
2425c5d6d63eSBarry Smith             sequential matrices from each processor and concatinating them
2426c5d6d63eSBarry Smith             together.
2427c5d6d63eSBarry Smith 
2428c5d6d63eSBarry Smith     Collective on MPI_Comm
2429c5d6d63eSBarry Smith 
2430c5d6d63eSBarry Smith    Input Parameters:
2431c5d6d63eSBarry Smith +    comm - the communicators the individual files are on
2432c5d6d63eSBarry Smith .    infile - name of input file
2433c5d6d63eSBarry Smith -    outfile - name of output file
2434c5d6d63eSBarry Smith 
24357e25d530SSatish Balay     Level: advanced
24367e25d530SSatish Balay 
2437c5d6d63eSBarry Smith    Notes: The number of columns of the matrix in EACH of the seperate files
2438c5d6d63eSBarry Smith       MUST be the same.
2439c5d6d63eSBarry Smith 
2440c5d6d63eSBarry Smith           The true name of the input files on each processor is obtained by
2441c5d6d63eSBarry Smith       appending .rank onto the infile string; where rank is 0 up to one less
2442c5d6d63eSBarry Smith       then the number of processors
2443c5d6d63eSBarry Smith @*/
2444c5d6d63eSBarry Smith int MatFileMerge(MPI_Comm comm,char *infile,char *outfile)
2445c5d6d63eSBarry Smith {
2446c5d6d63eSBarry Smith   int         ierr,rank,len,m,n,i,rstart,*indx,nnz,I;
2447c5d6d63eSBarry Smith   PetscViewer in,out;
2448c5d6d63eSBarry Smith   char        *name;
2449c5d6d63eSBarry Smith   Mat         A,B;
2450c5d6d63eSBarry Smith   PetscScalar *values;
2451c5d6d63eSBarry Smith 
2452c5d6d63eSBarry Smith   PetscFunctionBegin;
2453c5d6d63eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2454c5d6d63eSBarry Smith   ierr = PetscStrlen(infile,&len);CHKERRQ(ierr);
2455c5d6d63eSBarry Smith   ierr = PetscMalloc((len+5)*sizeof(char),&name);CHKERRQ(ierr);
2456c5d6d63eSBarry Smith   sprintf(name,"%s.%d",infile,rank);
2457c5d6d63eSBarry Smith   ierr = PetscViewerBinaryOpen(PETSC_COMM_SELF,name,PETSC_BINARY_RDONLY,&in);CHKERRQ(ierr);
2458c5d6d63eSBarry Smith   ierr = PetscFree(name);
2459c5d6d63eSBarry Smith   ierr = MatLoad(in,MATSEQAIJ,&A);CHKERRQ(ierr);
2460c5d6d63eSBarry Smith   ierr = PetscViewerDestroy(in);CHKERRQ(ierr);
2461c5d6d63eSBarry Smith 
2462c5d6d63eSBarry Smith   ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr);
2463c5d6d63eSBarry Smith   ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,PETSC_DETERMINE,n,0,0,0,0,&B);CHKERRQ(ierr);
2464c5d6d63eSBarry Smith   ierr = MatGetOwnershipRange(B,&rstart,0);CHKERRQ(ierr);
2465c5d6d63eSBarry Smith   for (i=0;i<m;i++) {
2466c5d6d63eSBarry Smith     ierr = MatGetRow(A,i,&nnz,&indx,&values);CHKERRQ(ierr);
2467c5d6d63eSBarry Smith     I    = i + rstart;
2468c5d6d63eSBarry Smith     ierr = MatSetValues(B,1,&I,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
2469c5d6d63eSBarry Smith     ierr = MatRestoreRow(A,i,&nnz,&indx,&values);CHKERRQ(ierr);
2470c5d6d63eSBarry Smith   }
2471c5d6d63eSBarry Smith   ierr = MatDestroy(A);CHKERRQ(ierr);
2472c5d6d63eSBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2473c5d6d63eSBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2474c5d6d63eSBarry Smith 
2475c5d6d63eSBarry Smith   ierr = PetscViewerBinaryOpen(comm,outfile,PETSC_BINARY_CREATE,&out);CHKERRQ(ierr);
2476c5d6d63eSBarry Smith   ierr = MatView(B,out);CHKERRQ(ierr);
2477c5d6d63eSBarry Smith   ierr = PetscViewerDestroy(out);CHKERRQ(ierr);
2478c5d6d63eSBarry Smith   ierr = MatDestroy(B);CHKERRQ(ierr);
2479c5d6d63eSBarry Smith   PetscFunctionReturn(0);
2480c5d6d63eSBarry Smith }
2481c5d6d63eSBarry Smith 
2482c5d6d63eSBarry Smith #undef __FUNCT__
2483c5d6d63eSBarry Smith #define __FUNCT__ "MatFileSplit"
2484c5d6d63eSBarry Smith int MatFileSplit(Mat A,char *outfile)
2485c5d6d63eSBarry Smith {
2486c5d6d63eSBarry Smith   int         ierr,rank,len,m,N,i,rstart,*indx,nnz;
2487c5d6d63eSBarry Smith   PetscViewer out;
2488c5d6d63eSBarry Smith   char        *name;
2489c5d6d63eSBarry Smith   Mat         B;
2490c5d6d63eSBarry Smith   PetscScalar *values;
2491c5d6d63eSBarry Smith 
2492c5d6d63eSBarry Smith   PetscFunctionBegin;
2493c5d6d63eSBarry Smith 
2494c5d6d63eSBarry Smith   ierr = MatGetLocalSize(A,&m,0);CHKERRQ(ierr);
2495c5d6d63eSBarry Smith   ierr = MatGetSize(A,0,&N);CHKERRQ(ierr);
2496c5d6d63eSBarry Smith   ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,m,N,0,0,&B);CHKERRQ(ierr);
2497c5d6d63eSBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,0);CHKERRQ(ierr);
2498c5d6d63eSBarry Smith   for (i=0;i<m;i++) {
2499c5d6d63eSBarry Smith     ierr = MatGetRow(A,i+rstart,&nnz,&indx,&values);CHKERRQ(ierr);
2500c5d6d63eSBarry Smith     ierr = MatSetValues(B,1,&i,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
2501c5d6d63eSBarry Smith     ierr = MatRestoreRow(A,i+rstart,&nnz,&indx,&values);CHKERRQ(ierr);
2502c5d6d63eSBarry Smith   }
2503c5d6d63eSBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2504c5d6d63eSBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2505c5d6d63eSBarry Smith 
2506c5d6d63eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2507c5d6d63eSBarry Smith   ierr = PetscStrlen(outfile,&len);CHKERRQ(ierr);
2508c5d6d63eSBarry Smith   ierr = PetscMalloc((len+5)*sizeof(char),&name);CHKERRQ(ierr);
2509c5d6d63eSBarry Smith   sprintf(name,"%s.%d",outfile,rank);
2510c5d6d63eSBarry Smith   ierr = PetscViewerBinaryOpen(PETSC_COMM_SELF,name,PETSC_BINARY_CREATE,&out);CHKERRQ(ierr);
2511c5d6d63eSBarry Smith   ierr = PetscFree(name);
2512c5d6d63eSBarry Smith   ierr = MatView(B,out);CHKERRQ(ierr);
2513c5d6d63eSBarry Smith   ierr = PetscViewerDestroy(out);CHKERRQ(ierr);
2514c5d6d63eSBarry Smith   ierr = MatDestroy(B);CHKERRQ(ierr);
2515c5d6d63eSBarry Smith   PetscFunctionReturn(0);
2516c5d6d63eSBarry Smith }
2517