1cb512458SBarry Smith #ifndef lint 2*44cd7ae7SLois Curfman McInnes static char vcid[] = "$Id: mpiaij.c,v 1.137 1996/04/03 14:39:22 curfman Exp curfman $"; 3cb512458SBarry Smith #endif 48a729477SBarry Smith 51eb62cbbSBarry Smith #include "mpiaij.h" 68a729477SBarry Smith #include "vec/vecimpl.h" 7d6dfbf8fSBarry Smith #include "inline/spops.h" 88a729477SBarry Smith 99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column 109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 119e25ed09SBarry Smith storage of the matrix. This is done in a non scable way since the 129e25ed09SBarry Smith length of colmap equals the global matrix length. 139e25ed09SBarry Smith */ 14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat) 159e25ed09SBarry Smith { 1644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 17ec8511deSBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data; 18416022c9SBarry Smith int n = B->n,i,shift = B->indexshift; 19dbb450caSBarry Smith 200452661fSBarry Smith aij->colmap = (int *) PetscMalloc(aij->N*sizeof(int));CHKPTRQ(aij->colmap); 21464493b3SBarry Smith PLogObjectMemory(mat,aij->N*sizeof(int)); 22cddf8d76SBarry Smith PetscMemzero(aij->colmap,aij->N*sizeof(int)); 23dbb450caSBarry Smith for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i-shift; 249e25ed09SBarry Smith return 0; 259e25ed09SBarry Smith } 269e25ed09SBarry Smith 272493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat); 282493cbb0SBarry Smith 2951c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm) 30299609e3SLois Curfman McInnes { 31299609e3SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 32299609e3SLois Curfman McInnes int ierr; 3317699dbbSLois Curfman McInnes if (aij->size == 1) { 3451c98ccdSLois Curfman McInnes ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr); 3548d91487SBarry Smith } else SETERRQ(1,"MatGetReordering_MPIAIJ:not supported in parallel"); 36299609e3SLois Curfman McInnes return 0; 37299609e3SLois Curfman McInnes } 38299609e3SLois Curfman McInnes 394b0e389bSBarry Smith static int MatSetValues_MPIAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 408a729477SBarry Smith { 4144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 42dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ*) aij->A->data; 434b0e389bSBarry Smith Scalar value; 441eb62cbbSBarry Smith int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 451eb62cbbSBarry Smith int cstart = aij->cstart, cend = aij->cend,row,col; 464b0e389bSBarry Smith int shift = C->indexshift,roworiented = aij->roworiented; 478a729477SBarry Smith 4864119d58SLois Curfman McInnes if (aij->insertmode != NOT_SET_VALUES && aij->insertmode != addv) { 4948d91487SBarry Smith SETERRQ(1,"MatSetValues_MPIAIJ:Cannot mix inserts and adds"); 508a729477SBarry Smith } 511eb62cbbSBarry Smith aij->insertmode = addv; 528a729477SBarry Smith for ( i=0; i<m; i++ ) { 534b0e389bSBarry Smith if (im[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row"); 544b0e389bSBarry Smith if (im[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large"); 554b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 564b0e389bSBarry Smith row = im[i] - rstart; 571eb62cbbSBarry Smith for ( j=0; j<n; j++ ) { 584b0e389bSBarry Smith if (in[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column"); 594b0e389bSBarry Smith if (in[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large"); 604b0e389bSBarry Smith if (in[j] >= cstart && in[j] < cend){ 614b0e389bSBarry Smith col = in[j] - cstart; 624b0e389bSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 634b0e389bSBarry Smith ierr = MatSetValues(aij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); 641eb62cbbSBarry Smith } 651eb62cbbSBarry Smith else { 66227d817aSBarry Smith if (mat->was_assembled) { 67b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 684b0e389bSBarry Smith col = aij->colmap[in[j]] + shift; 69ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 702493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 714b0e389bSBarry Smith col = in[j]; 72d6dfbf8fSBarry Smith } 739e25ed09SBarry Smith } 744b0e389bSBarry Smith else col = in[j]; 754b0e389bSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 764b0e389bSBarry Smith ierr = MatSetValues(aij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); 771eb62cbbSBarry Smith } 781eb62cbbSBarry Smith } 791eb62cbbSBarry Smith } 801eb62cbbSBarry Smith else { 814b0e389bSBarry Smith if (roworiented) { 824b0e389bSBarry Smith ierr = StashValues_Private(&aij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 834b0e389bSBarry Smith } 844b0e389bSBarry Smith else { 854b0e389bSBarry Smith row = im[i]; 864b0e389bSBarry Smith for ( j=0; j<n; j++ ) { 874b0e389bSBarry Smith ierr = StashValues_Private(&aij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 884b0e389bSBarry Smith } 894b0e389bSBarry Smith } 901eb62cbbSBarry Smith } 918a729477SBarry Smith } 928a729477SBarry Smith return 0; 938a729477SBarry Smith } 948a729477SBarry Smith 95b49de8d1SLois Curfman McInnes static int MatGetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 96b49de8d1SLois Curfman McInnes { 97b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 98b49de8d1SLois Curfman McInnes Mat_SeqAIJ *C = (Mat_SeqAIJ*) aij->A->data; 99b49de8d1SLois Curfman McInnes int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 100b49de8d1SLois Curfman McInnes int cstart = aij->cstart, cend = aij->cend,row,col; 101b49de8d1SLois Curfman McInnes int shift = C->indexshift; 102b49de8d1SLois Curfman McInnes 103b49de8d1SLois Curfman McInnes for ( i=0; i<m; i++ ) { 104b49de8d1SLois Curfman McInnes if (idxm[i] < 0) SETERRQ(1,"MatGetValues_MPIAIJ:Negative row"); 105b49de8d1SLois Curfman McInnes if (idxm[i] >= aij->M) SETERRQ(1,"MatGetValues_MPIAIJ:Row too large"); 106b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 107b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 108b49de8d1SLois Curfman McInnes for ( j=0; j<n; j++ ) { 109b49de8d1SLois Curfman McInnes if (idxn[j] < 0) SETERRQ(1,"MatGetValues_MPIAIJ:Negative column"); 110b49de8d1SLois Curfman McInnes if (idxn[j] >= aij->N) SETERRQ(1,"MatGetValues_MPIAIJ:Col too large"); 111b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend){ 112b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 113b49de8d1SLois Curfman McInnes ierr = MatGetValues(aij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 114b49de8d1SLois Curfman McInnes } 115b49de8d1SLois Curfman McInnes else { 116b49de8d1SLois Curfman McInnes col = aij->colmap[idxn[j]] + shift; 117b49de8d1SLois Curfman McInnes ierr = MatGetValues(aij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 118b49de8d1SLois Curfman McInnes } 119b49de8d1SLois Curfman McInnes } 120b49de8d1SLois Curfman McInnes } 121b49de8d1SLois Curfman McInnes else { 122b49de8d1SLois Curfman McInnes SETERRQ(1,"MatGetValues_MPIAIJ:Only local values currently supported"); 123b49de8d1SLois Curfman McInnes } 124b49de8d1SLois Curfman McInnes } 125b49de8d1SLois Curfman McInnes return 0; 126b49de8d1SLois Curfman McInnes } 127b49de8d1SLois Curfman McInnes 128fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode) 1298a729477SBarry Smith { 13044a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 131d6dfbf8fSBarry Smith MPI_Comm comm = mat->comm; 13217699dbbSLois Curfman McInnes int size = aij->size, *owners = aij->rowners; 13317699dbbSLois Curfman McInnes int rank = aij->rank,tag = mat->tag, *owner,*starts,count,ierr; 1341eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 1356abc6512SBarry Smith int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 1361eb62cbbSBarry Smith InsertMode addv; 1371eb62cbbSBarry Smith Scalar *rvalues,*svalues; 1381eb62cbbSBarry Smith 1391eb62cbbSBarry Smith /* make sure all processors are either in INSERTMODE or ADDMODE */ 140d65a2f8fSBarry Smith MPI_Allreduce(&aij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 141dbb450caSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 142bbb6d6a8SBarry Smith SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added"); 1431eb62cbbSBarry Smith } 1441eb62cbbSBarry Smith aij->insertmode = addv; /* in case this processor had no cache */ 1451eb62cbbSBarry Smith 1461eb62cbbSBarry Smith /* first count number of contributors to each processor */ 1470452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 148cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 1490452661fSBarry Smith owner = (int *) PetscMalloc( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 1501eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1511eb62cbbSBarry Smith idx = aij->stash.idx[i]; 15217699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 1531eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 1541eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; break; 1558a729477SBarry Smith } 1568a729477SBarry Smith } 1578a729477SBarry Smith } 15817699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 1591eb62cbbSBarry Smith 1601eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 1610452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 16217699dbbSLois Curfman McInnes MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm); 16317699dbbSLois Curfman McInnes nreceives = work[rank]; 16417699dbbSLois Curfman McInnes MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 16517699dbbSLois Curfman McInnes nmax = work[rank]; 1660452661fSBarry Smith PetscFree(work); 1671eb62cbbSBarry Smith 1681eb62cbbSBarry Smith /* post receives: 1691eb62cbbSBarry Smith 1) each message will consist of ordered pairs 1701eb62cbbSBarry Smith (global index,value) we store the global index as a double 171d6dfbf8fSBarry Smith to simplify the message passing. 1721eb62cbbSBarry Smith 2) since we don't know how long each individual message is we 1731eb62cbbSBarry Smith allocate the largest needed buffer for each receive. Potentially 1741eb62cbbSBarry Smith this is a lot of wasted space. 1751eb62cbbSBarry Smith 1761eb62cbbSBarry Smith 1771eb62cbbSBarry Smith This could be done better. 1781eb62cbbSBarry Smith */ 1790452661fSBarry Smith rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 18078b31e54SBarry Smith CHKPTRQ(rvalues); 1810452661fSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request)); 18278b31e54SBarry Smith CHKPTRQ(recv_waits); 1831eb62cbbSBarry Smith for ( i=0; i<nreceives; i++ ) { 184416022c9SBarry Smith MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 1851eb62cbbSBarry Smith comm,recv_waits+i); 1861eb62cbbSBarry Smith } 1871eb62cbbSBarry Smith 1881eb62cbbSBarry Smith /* do sends: 1891eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 1901eb62cbbSBarry Smith the ith processor 1911eb62cbbSBarry Smith */ 1920452661fSBarry Smith svalues = (Scalar *) PetscMalloc(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 1930452661fSBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 19478b31e54SBarry Smith CHKPTRQ(send_waits); 1950452661fSBarry Smith starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 1961eb62cbbSBarry Smith starts[0] = 0; 19717699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1981eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1991eb62cbbSBarry Smith svalues[3*starts[owner[i]]] = (Scalar) aij->stash.idx[i]; 2001eb62cbbSBarry Smith svalues[3*starts[owner[i]]+1] = (Scalar) aij->stash.idy[i]; 2011eb62cbbSBarry Smith svalues[3*(starts[owner[i]]++)+2] = aij->stash.array[i]; 2021eb62cbbSBarry Smith } 2030452661fSBarry Smith PetscFree(owner); 2041eb62cbbSBarry Smith starts[0] = 0; 20517699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 2061eb62cbbSBarry Smith count = 0; 20717699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 2081eb62cbbSBarry Smith if (procs[i]) { 209416022c9SBarry Smith MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag, 2101eb62cbbSBarry Smith comm,send_waits+count++); 2111eb62cbbSBarry Smith } 2121eb62cbbSBarry Smith } 2130452661fSBarry Smith PetscFree(starts); PetscFree(nprocs); 2141eb62cbbSBarry Smith 2151eb62cbbSBarry Smith /* Free cache space */ 2162191d07cSBarry Smith PLogInfo(0,"[%d]MatAssemblyBegin_MPIAIJ:Number of off processor values %d\n",rank,aij->stash.n); 21778b31e54SBarry Smith ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr); 2181eb62cbbSBarry Smith 2191eb62cbbSBarry Smith aij->svalues = svalues; aij->rvalues = rvalues; 2201eb62cbbSBarry Smith aij->nsends = nsends; aij->nrecvs = nreceives; 2211eb62cbbSBarry Smith aij->send_waits = send_waits; aij->recv_waits = recv_waits; 2221eb62cbbSBarry Smith aij->rmax = nmax; 2231eb62cbbSBarry Smith 2241eb62cbbSBarry Smith return 0; 2251eb62cbbSBarry Smith } 22644a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat); 2271eb62cbbSBarry Smith 228fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode) 2291eb62cbbSBarry Smith { 23044a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 231dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ *) aij->A->data; 2321eb62cbbSBarry Smith MPI_Status *send_status,recv_status; 233416022c9SBarry Smith int imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr; 234416022c9SBarry Smith int row,col,other_disassembled,shift = C->indexshift; 2351eb62cbbSBarry Smith Scalar *values,val; 2361eb62cbbSBarry Smith InsertMode addv = aij->insertmode; 2371eb62cbbSBarry Smith 2381eb62cbbSBarry Smith /* wait on receives */ 2391eb62cbbSBarry Smith while (count) { 240d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status); 2411eb62cbbSBarry Smith /* unpack receives into our local space */ 242d6dfbf8fSBarry Smith values = aij->rvalues + 3*imdex*aij->rmax; 243c60448a5SBarry Smith MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 2441eb62cbbSBarry Smith n = n/3; 2451eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 246227d817aSBarry Smith row = (int) PetscReal(values[3*i]) - aij->rstart; 247227d817aSBarry Smith col = (int) PetscReal(values[3*i+1]); 2481eb62cbbSBarry Smith val = values[3*i+2]; 2491eb62cbbSBarry Smith if (col >= aij->cstart && col < aij->cend) { 2501eb62cbbSBarry Smith col -= aij->cstart; 2511eb62cbbSBarry Smith MatSetValues(aij->A,1,&row,1,&col,&val,addv); 2521eb62cbbSBarry Smith } 2531eb62cbbSBarry Smith else { 254227d817aSBarry Smith if (mat->was_assembled) { 255b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 256dbb450caSBarry Smith col = aij->colmap[col] + shift; 257ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 2582493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 259227d817aSBarry Smith col = (int) PetscReal(values[3*i+1]); 260d6dfbf8fSBarry Smith } 2619e25ed09SBarry Smith } 2621eb62cbbSBarry Smith MatSetValues(aij->B,1,&row,1,&col,&val,addv); 2631eb62cbbSBarry Smith } 2641eb62cbbSBarry Smith } 2651eb62cbbSBarry Smith count--; 2661eb62cbbSBarry Smith } 2670452661fSBarry Smith PetscFree(aij->recv_waits); PetscFree(aij->rvalues); 2681eb62cbbSBarry Smith 2691eb62cbbSBarry Smith /* wait on sends */ 2701eb62cbbSBarry Smith if (aij->nsends) { 2710452661fSBarry Smith send_status = (MPI_Status *) PetscMalloc(aij->nsends*sizeof(MPI_Status)); 27278b31e54SBarry Smith CHKPTRQ(send_status); 2731eb62cbbSBarry Smith MPI_Waitall(aij->nsends,aij->send_waits,send_status); 2740452661fSBarry Smith PetscFree(send_status); 2751eb62cbbSBarry Smith } 2760452661fSBarry Smith PetscFree(aij->send_waits); PetscFree(aij->svalues); 2771eb62cbbSBarry Smith 27864119d58SLois Curfman McInnes aij->insertmode = NOT_SET_VALUES; 27978b31e54SBarry Smith ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr); 28078b31e54SBarry Smith ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr); 2811eb62cbbSBarry Smith 2822493cbb0SBarry Smith /* determine if any processor has disassembled, if so we must 2832493cbb0SBarry Smith also disassemble ourselfs, in order that we may reassemble. */ 284227d817aSBarry Smith MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm); 285227d817aSBarry Smith if (mat->was_assembled && !other_disassembled) { 2862493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2872493cbb0SBarry Smith } 2882493cbb0SBarry Smith 289227d817aSBarry Smith if (!mat->was_assembled && mode == FINAL_ASSEMBLY) { 29078b31e54SBarry Smith ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr); 2915e42470aSBarry Smith } 29278b31e54SBarry Smith ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr); 29378b31e54SBarry Smith ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr); 2945e42470aSBarry Smith 2957a0afa10SBarry Smith if (aij->rowvalues) {PetscFree(aij->rowvalues); aij->rowvalues = 0;} 2968a729477SBarry Smith return 0; 2978a729477SBarry Smith } 2988a729477SBarry Smith 2992ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A) 3001eb62cbbSBarry Smith { 30144a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 302dbd7a890SLois Curfman McInnes int ierr; 30378b31e54SBarry Smith ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 30478b31e54SBarry Smith ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 3051eb62cbbSBarry Smith return 0; 3061eb62cbbSBarry Smith } 3071eb62cbbSBarry Smith 3081eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the 3091eb62cbbSBarry Smith matrix is square and the column and row owerships are identical. 3101eb62cbbSBarry Smith This is a BUG. The only way to fix it seems to be to access 3111eb62cbbSBarry Smith aij->A and aij->B directly and not through the MatZeroRows() 3121eb62cbbSBarry Smith routine. 3131eb62cbbSBarry Smith */ 31444a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag) 3151eb62cbbSBarry Smith { 31644a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 31717699dbbSLois Curfman McInnes int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 3186abc6512SBarry Smith int *procs,*nprocs,j,found,idx,nsends,*work; 31917699dbbSLois Curfman McInnes int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 3205392566eSBarry Smith int *rvalues,tag = A->tag,count,base,slen,n,*source; 321d6dfbf8fSBarry Smith int *lens,imdex,*lrows,*values; 322d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 3231eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 3241eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 3251eb62cbbSBarry Smith IS istmp; 3261eb62cbbSBarry Smith 32777c4ece6SBarry Smith ierr = ISGetSize(is,&N); CHKERRQ(ierr); 32878b31e54SBarry Smith ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 3291eb62cbbSBarry Smith 3301eb62cbbSBarry Smith /* first count number of contributors to each processor */ 3310452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 332cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 3330452661fSBarry Smith owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 3341eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3351eb62cbbSBarry Smith idx = rows[i]; 3361eb62cbbSBarry Smith found = 0; 33717699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 3381eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 3391eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 3401eb62cbbSBarry Smith } 3411eb62cbbSBarry Smith } 342bbb6d6a8SBarry Smith if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range"); 3431eb62cbbSBarry Smith } 34417699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 3451eb62cbbSBarry Smith 3461eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 3470452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 34817699dbbSLois Curfman McInnes MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm); 34917699dbbSLois Curfman McInnes nrecvs = work[rank]; 35017699dbbSLois Curfman McInnes MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 35117699dbbSLois Curfman McInnes nmax = work[rank]; 3520452661fSBarry Smith PetscFree(work); 3531eb62cbbSBarry Smith 3541eb62cbbSBarry Smith /* post receives: */ 3550452661fSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 35678b31e54SBarry Smith CHKPTRQ(rvalues); 3570452661fSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request)); 35878b31e54SBarry Smith CHKPTRQ(recv_waits); 3591eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 360416022c9SBarry Smith MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 3611eb62cbbSBarry Smith } 3621eb62cbbSBarry Smith 3631eb62cbbSBarry Smith /* do sends: 3641eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 3651eb62cbbSBarry Smith the ith processor 3661eb62cbbSBarry Smith */ 3670452661fSBarry Smith svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 3680452661fSBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 36978b31e54SBarry Smith CHKPTRQ(send_waits); 3700452661fSBarry Smith starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 3711eb62cbbSBarry Smith starts[0] = 0; 37217699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3731eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3741eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 3751eb62cbbSBarry Smith } 3761eb62cbbSBarry Smith ISRestoreIndices(is,&rows); 3771eb62cbbSBarry Smith 3781eb62cbbSBarry Smith starts[0] = 0; 37917699dbbSLois Curfman McInnes for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3801eb62cbbSBarry Smith count = 0; 38117699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 3821eb62cbbSBarry Smith if (procs[i]) { 383416022c9SBarry Smith MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++); 3841eb62cbbSBarry Smith } 3851eb62cbbSBarry Smith } 3860452661fSBarry Smith PetscFree(starts); 3871eb62cbbSBarry Smith 38817699dbbSLois Curfman McInnes base = owners[rank]; 3891eb62cbbSBarry Smith 3901eb62cbbSBarry Smith /* wait on receives */ 3910452661fSBarry Smith lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 3921eb62cbbSBarry Smith source = lens + nrecvs; 3931eb62cbbSBarry Smith count = nrecvs; slen = 0; 3941eb62cbbSBarry Smith while (count) { 395d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 3961eb62cbbSBarry Smith /* unpack receives into our local space */ 3971eb62cbbSBarry Smith MPI_Get_count(&recv_status,MPI_INT,&n); 398d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 399d6dfbf8fSBarry Smith lens[imdex] = n; 4001eb62cbbSBarry Smith slen += n; 4011eb62cbbSBarry Smith count--; 4021eb62cbbSBarry Smith } 4030452661fSBarry Smith PetscFree(recv_waits); 4041eb62cbbSBarry Smith 4051eb62cbbSBarry Smith /* move the data into the send scatter */ 4060452661fSBarry Smith lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 4071eb62cbbSBarry Smith count = 0; 4081eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 4091eb62cbbSBarry Smith values = rvalues + i*nmax; 4101eb62cbbSBarry Smith for ( j=0; j<lens[i]; j++ ) { 4111eb62cbbSBarry Smith lrows[count++] = values[j] - base; 4121eb62cbbSBarry Smith } 4131eb62cbbSBarry Smith } 4140452661fSBarry Smith PetscFree(rvalues); PetscFree(lens); 4150452661fSBarry Smith PetscFree(owner); PetscFree(nprocs); 4161eb62cbbSBarry Smith 4171eb62cbbSBarry Smith /* actually zap the local rows */ 418416022c9SBarry Smith ierr = ISCreateSeq(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 419464493b3SBarry Smith PLogObjectParent(A,istmp); 4200452661fSBarry Smith PetscFree(lrows); 42178b31e54SBarry Smith ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 42278b31e54SBarry Smith ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 42378b31e54SBarry Smith ierr = ISDestroy(istmp); CHKERRQ(ierr); 4241eb62cbbSBarry Smith 4251eb62cbbSBarry Smith /* wait on sends */ 4261eb62cbbSBarry Smith if (nsends) { 4270452661fSBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status)); 42878b31e54SBarry Smith CHKPTRQ(send_status); 4291eb62cbbSBarry Smith MPI_Waitall(nsends,send_waits,send_status); 4300452661fSBarry Smith PetscFree(send_status); 4311eb62cbbSBarry Smith } 4320452661fSBarry Smith PetscFree(send_waits); PetscFree(svalues); 4331eb62cbbSBarry Smith 4341eb62cbbSBarry Smith return 0; 4351eb62cbbSBarry Smith } 4361eb62cbbSBarry Smith 437*44cd7ae7SLois Curfman McInnes extern int MatMult_SeqAIJ(Mat A,Vec,Vec); 438*44cd7ae7SLois Curfman McInnes extern int MatMultAdd_SeqAIJ(Mat A,Vec,Vec,Vec); 439*44cd7ae7SLois Curfman McInnes extern int MatMultTrans_SeqAIJ(Mat A,Vec,Vec); 440*44cd7ae7SLois Curfman McInnes extern int MatMultTransAdd_SeqAIJ(Mat A,Vec,Vec,Vec); 441416022c9SBarry Smith static int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy) 4421eb62cbbSBarry Smith { 443416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 4441eb62cbbSBarry Smith int ierr; 445416022c9SBarry Smith 44664119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx); CHKERRQ(ierr); 447*44cd7ae7SLois Curfman McInnes ierr = MatMult_SeqAIJ(a->A,xx,yy); CHKERRQ(ierr); 44864119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx); CHKERRQ(ierr); 449*44cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqAIJ(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 4501eb62cbbSBarry Smith return 0; 4511eb62cbbSBarry Smith } 4521eb62cbbSBarry Smith 453416022c9SBarry Smith static int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 454da3a660dSBarry Smith { 455416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 456da3a660dSBarry Smith int ierr; 45764119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 458*44cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqAIJ(a->A,xx,yy,zz); CHKERRQ(ierr); 45964119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 460*44cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqAIJ(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 461da3a660dSBarry Smith return 0; 462da3a660dSBarry Smith } 463da3a660dSBarry Smith 464416022c9SBarry Smith static int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy) 465da3a660dSBarry Smith { 466416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 467da3a660dSBarry Smith int ierr; 468da3a660dSBarry Smith 469da3a660dSBarry Smith /* do nondiagonal part */ 470*44cd7ae7SLois Curfman McInnes ierr = MatMultTrans_SeqAIJ(a->B,xx,a->lvec); CHKERRQ(ierr); 471da3a660dSBarry Smith /* send it on its way */ 472416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES, 47364119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 474da3a660dSBarry Smith /* do local part */ 475*44cd7ae7SLois Curfman McInnes ierr = MatMultTrans_SeqAIJ(a->A,xx,yy); CHKERRQ(ierr); 476da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 477da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 478da3a660dSBarry Smith /* but is not perhaps always true. */ 479416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES, 48064119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 481da3a660dSBarry Smith return 0; 482da3a660dSBarry Smith } 483da3a660dSBarry Smith 484416022c9SBarry Smith static int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 485da3a660dSBarry Smith { 486416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 487da3a660dSBarry Smith int ierr; 488da3a660dSBarry Smith 489da3a660dSBarry Smith /* do nondiagonal part */ 490*44cd7ae7SLois Curfman McInnes ierr = MatMultTrans_SeqAIJ(a->B,xx,a->lvec); CHKERRQ(ierr); 491da3a660dSBarry Smith /* send it on its way */ 492416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES, 49364119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 494da3a660dSBarry Smith /* do local part */ 495*44cd7ae7SLois Curfman McInnes ierr = MatMultTransAdd_SeqAIJ(a->A,xx,yy,zz); CHKERRQ(ierr); 496da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 497da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 498da3a660dSBarry Smith /* but is not perhaps always true. */ 499416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES, 50064119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 501da3a660dSBarry Smith return 0; 502da3a660dSBarry Smith } 503da3a660dSBarry Smith 5041eb62cbbSBarry Smith /* 5051eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 5061eb62cbbSBarry Smith diagonal block 5071eb62cbbSBarry Smith */ 508416022c9SBarry Smith static int MatGetDiagonal_MPIAIJ(Mat A,Vec v) 5091eb62cbbSBarry Smith { 510416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 511*44cd7ae7SLois Curfman McInnes if (a->M != a->N) 512*44cd7ae7SLois Curfman McInnes SETERRQ(1,"MatGetDiagonal_MPIAIJ:Supports only square matrix where A->A is diag block"); 513416022c9SBarry Smith return MatGetDiagonal(a->A,v); 5141eb62cbbSBarry Smith } 5151eb62cbbSBarry Smith 516052efed2SBarry Smith static int MatScale_MPIAIJ(Scalar *aa,Mat A) 517052efed2SBarry Smith { 518052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 519052efed2SBarry Smith int ierr; 520052efed2SBarry Smith ierr = MatScale(aa,a->A); CHKERRQ(ierr); 521052efed2SBarry Smith ierr = MatScale(aa,a->B); CHKERRQ(ierr); 522052efed2SBarry Smith return 0; 523052efed2SBarry Smith } 524052efed2SBarry Smith 52544a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj) 5261eb62cbbSBarry Smith { 5271eb62cbbSBarry Smith Mat mat = (Mat) obj; 52844a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 5291eb62cbbSBarry Smith int ierr; 530a5a9c739SBarry Smith #if defined(PETSC_LOG) 5316e35fa57SLois Curfman McInnes PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N); 532a5a9c739SBarry Smith #endif 5330452661fSBarry Smith PetscFree(aij->rowners); 53478b31e54SBarry Smith ierr = MatDestroy(aij->A); CHKERRQ(ierr); 53578b31e54SBarry Smith ierr = MatDestroy(aij->B); CHKERRQ(ierr); 5360452661fSBarry Smith if (aij->colmap) PetscFree(aij->colmap); 5370452661fSBarry Smith if (aij->garray) PetscFree(aij->garray); 5381eb62cbbSBarry Smith if (aij->lvec) VecDestroy(aij->lvec); 539a56f8943SBarry Smith if (aij->Mvctx) VecScatterDestroy(aij->Mvctx); 5407a0afa10SBarry Smith if (aij->rowvalues) PetscFree(aij->rowvalues); 5410452661fSBarry Smith PetscFree(aij); 542a5a9c739SBarry Smith PLogObjectDestroy(mat); 5430452661fSBarry Smith PetscHeaderDestroy(mat); 5441eb62cbbSBarry Smith return 0; 5451eb62cbbSBarry Smith } 5467857610eSBarry Smith #include "draw.h" 547b16a3bb1SBarry Smith #include "pinclude/pviewer.h" 548ee50ffe9SBarry Smith 549416022c9SBarry Smith static int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer) 5501eb62cbbSBarry Smith { 551416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 552416022c9SBarry Smith int ierr; 553416022c9SBarry Smith 55417699dbbSLois Curfman McInnes if (aij->size == 1) { 555416022c9SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 556416022c9SBarry Smith } 557a523beb4SLois Curfman McInnes else SETERRQ(1,"MatView_MPIAIJ_Binary:Only uniprocessor output supported"); 558416022c9SBarry Smith return 0; 559416022c9SBarry Smith } 560416022c9SBarry Smith 561d7e8b826SBarry Smith static int MatView_MPIAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer) 562416022c9SBarry Smith { 56344a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 564dbb450caSBarry Smith Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data; 565a56f8943SBarry Smith int ierr, format,shift = C->indexshift,rank; 566d636dbe3SBarry Smith FILE *fd; 56719bcc07fSBarry Smith ViewerType vtype; 568416022c9SBarry Smith 56919bcc07fSBarry Smith ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 57019bcc07fSBarry Smith if (vtype == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) { 57190ace30eSBarry Smith ierr = ViewerGetFormat(viewer,&format); 57290ace30eSBarry Smith if (format == ASCII_FORMAT_INFO_DETAILED) { 57395e01e2fSLois Curfman McInnes int nz, nzalloc, mem, flg; 574a56f8943SBarry Smith MPI_Comm_rank(mat->comm,&rank); 57590ace30eSBarry Smith ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 576a56f8943SBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&nz,&nzalloc,&mem); 57795e01e2fSLois Curfman McInnes ierr = OptionsHasName(PETSC_NULL,"-mat_aij_no_inode",&flg); CHKERRQ(ierr); 57877c4ece6SBarry Smith PetscSequentialPhaseBegin(mat->comm,1); 57995e01e2fSLois Curfman McInnes if (flg) fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d, not using I-node routines\n", 58095e01e2fSLois Curfman McInnes rank,aij->m,nz,nzalloc,mem); 58195e01e2fSLois Curfman McInnes else fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d, using I-node routines\n", 58295e01e2fSLois Curfman McInnes rank,aij->m,nz,nzalloc,mem); 58308480c60SBarry Smith ierr = MatGetInfo(aij->A,MAT_LOCAL,&nz,&nzalloc,&mem); 58495e01e2fSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,nz); 58508480c60SBarry Smith ierr = MatGetInfo(aij->B,MAT_LOCAL,&nz,&nzalloc,&mem); 58695e01e2fSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,nz); 587a56f8943SBarry Smith fflush(fd); 58877c4ece6SBarry Smith PetscSequentialPhaseEnd(mat->comm,1); 589a40aa06bSLois Curfman McInnes ierr = VecScatterView(aij->Mvctx,viewer); CHKERRQ(ierr); 590416022c9SBarry Smith return 0; 591416022c9SBarry Smith } 59290ace30eSBarry Smith else if (format == ASCII_FORMAT_INFO) { 59308480c60SBarry Smith return 0; 59408480c60SBarry Smith } 595416022c9SBarry Smith } 596416022c9SBarry Smith 59719bcc07fSBarry Smith if (vtype == DRAW_VIEWER) { 59819bcc07fSBarry Smith Draw draw; 59919bcc07fSBarry Smith PetscTruth isnull; 60019bcc07fSBarry Smith ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr); 60119bcc07fSBarry Smith ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) return 0; 60219bcc07fSBarry Smith } 60319bcc07fSBarry Smith 60419bcc07fSBarry Smith if (vtype == ASCII_FILE_VIEWER) { 60590ace30eSBarry Smith ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 60677c4ece6SBarry Smith PetscSequentialPhaseBegin(mat->comm,1); 607d13ab20cSBarry Smith fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 60817699dbbSLois Curfman McInnes aij->rank,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart, 6091eb62cbbSBarry Smith aij->cend); 61078b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 61178b31e54SBarry Smith ierr = MatView(aij->B,viewer); CHKERRQ(ierr); 612d13ab20cSBarry Smith fflush(fd); 61377c4ece6SBarry Smith PetscSequentialPhaseEnd(mat->comm,1); 614d13ab20cSBarry Smith } 615416022c9SBarry Smith else { 616a56f8943SBarry Smith int size = aij->size; 617a56f8943SBarry Smith rank = aij->rank; 61817699dbbSLois Curfman McInnes if (size == 1) { 61978b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 62095373324SBarry Smith } 62195373324SBarry Smith else { 62295373324SBarry Smith /* assemble the entire matrix onto first processor. */ 62395373324SBarry Smith Mat A; 624ec8511deSBarry Smith Mat_SeqAIJ *Aloc; 6252eb8c8abSBarry Smith int M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct; 62695373324SBarry Smith Scalar *a; 6272ee70a88SLois Curfman McInnes 62817699dbbSLois Curfman McInnes if (!rank) { 629b4fd4287SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 630c451ab25SLois Curfman McInnes CHKERRQ(ierr); 63195373324SBarry Smith } 63295373324SBarry Smith else { 633b4fd4287SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 634c451ab25SLois Curfman McInnes CHKERRQ(ierr); 63595373324SBarry Smith } 636464493b3SBarry Smith PLogObjectParent(mat,A); 637416022c9SBarry Smith 63895373324SBarry Smith /* copy over the A part */ 639ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->A->data; 6402ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 64195373324SBarry Smith row = aij->rstart; 642dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;} 64395373324SBarry Smith for ( i=0; i<m; i++ ) { 644416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr); 64595373324SBarry Smith row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 64695373324SBarry Smith } 6472ee70a88SLois Curfman McInnes aj = Aloc->j; 648dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;} 64995373324SBarry Smith 65095373324SBarry Smith /* copy over the B part */ 651ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->B->data; 6522ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 65395373324SBarry Smith row = aij->rstart; 6540452661fSBarry Smith ct = cols = (int *) PetscMalloc( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols); 655dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];} 65695373324SBarry Smith for ( i=0; i<m; i++ ) { 657416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr); 65895373324SBarry Smith row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 65995373324SBarry Smith } 6600452661fSBarry Smith PetscFree(ct); 66178b31e54SBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 66278b31e54SBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 66317699dbbSLois Curfman McInnes if (!rank) { 66478b31e54SBarry Smith ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 66595373324SBarry Smith } 66678b31e54SBarry Smith ierr = MatDestroy(A); CHKERRQ(ierr); 66795373324SBarry Smith } 66895373324SBarry Smith } 6691eb62cbbSBarry Smith return 0; 6701eb62cbbSBarry Smith } 6711eb62cbbSBarry Smith 672416022c9SBarry Smith static int MatView_MPIAIJ(PetscObject obj,Viewer viewer) 673416022c9SBarry Smith { 674416022c9SBarry Smith Mat mat = (Mat) obj; 675416022c9SBarry Smith int ierr; 67619bcc07fSBarry Smith ViewerType vtype; 677416022c9SBarry Smith 678416022c9SBarry Smith if (!viewer) { 67919bcc07fSBarry Smith viewer = STDOUT_VIEWER_SELF; 680416022c9SBarry Smith } 68119bcc07fSBarry Smith ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 68219bcc07fSBarry Smith if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER || 68319bcc07fSBarry Smith vtype == DRAW_VIEWER || vtype == MATLAB_VIEWER) { 684d7e8b826SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 685416022c9SBarry Smith } 68619bcc07fSBarry Smith else if (vtype == BINARY_FILE_VIEWER) { 687416022c9SBarry Smith return MatView_MPIAIJ_Binary(mat,viewer); 688416022c9SBarry Smith } 689416022c9SBarry Smith return 0; 690416022c9SBarry Smith } 691416022c9SBarry Smith 692ec8511deSBarry Smith extern int MatMarkDiag_SeqAIJ(Mat); 693*44cd7ae7SLois Curfman McInnes extern int MatRelax_SeqAIJ(Mat,Vec,double,MatSORType,double,int,Vec); 6941eb62cbbSBarry Smith /* 6951eb62cbbSBarry Smith This has to provide several versions. 6961eb62cbbSBarry Smith 6971eb62cbbSBarry Smith 1) per sequential 6981eb62cbbSBarry Smith 2) a) use only local smoothing updating outer values only once. 6991eb62cbbSBarry Smith b) local smoothing updating outer values each inner iteration 700d6dfbf8fSBarry Smith 3) color updating out values betwen colors. 7011eb62cbbSBarry Smith */ 702fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag, 703dbb450caSBarry Smith double fshift,int its,Vec xx) 7048a729477SBarry Smith { 70544a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 706d6dfbf8fSBarry Smith Mat AA = mat->A, BB = mat->B; 707ec8511deSBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data; 7086abc6512SBarry Smith Scalar zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts; 7096abc6512SBarry Smith int ierr,*idx, *diag; 710416022c9SBarry Smith int n = mat->n, m = mat->m, i,shift = A->indexshift; 711da3a660dSBarry Smith Vec tt; 7128a729477SBarry Smith 713d6dfbf8fSBarry Smith VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls); 714dbb450caSBarry Smith xs = x + shift; /* shift by one for index start of 1 */ 715dbb450caSBarry Smith ls = ls + shift; 716ec8511deSBarry Smith if (!A->diag) {if ((ierr = MatMarkDiag_SeqAIJ(AA))) return ierr;} 717d6dfbf8fSBarry Smith diag = A->diag; 718acb40c82SBarry Smith if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) { 71948d91487SBarry Smith SETERRQ(1,"MatRelax_MPIAIJ:Option not supported"); 720acb40c82SBarry Smith } 721da3a660dSBarry Smith if (flag & SOR_EISENSTAT) { 722da3a660dSBarry Smith /* Let A = L + U + D; where L is lower trianglar, 723da3a660dSBarry Smith U is upper triangular, E is diagonal; This routine applies 724da3a660dSBarry Smith 725da3a660dSBarry Smith (L + E)^{-1} A (U + E)^{-1} 726da3a660dSBarry Smith 727da3a660dSBarry Smith to a vector efficiently using Eisenstat's trick. This is for 728da3a660dSBarry Smith the case of SSOR preconditioner, so E is D/omega where omega 729da3a660dSBarry Smith is the relaxation factor. 730da3a660dSBarry Smith */ 73178b31e54SBarry Smith ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr); 732464493b3SBarry Smith PLogObjectParent(matin,tt); 733da3a660dSBarry Smith VecGetArray(tt,&t); 734da3a660dSBarry Smith scale = (2.0/omega) - 1.0; 735da3a660dSBarry Smith /* x = (E + U)^{-1} b */ 736da3a660dSBarry Smith VecSet(&zero,mat->lvec); 73764119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 73878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 739da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 740da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 741dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 742dbb450caSBarry Smith v = A->a + diag[i] + !shift; 743da3a660dSBarry Smith sum = b[i]; 744da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 745dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 746da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 747dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 748dbb450caSBarry Smith v = B->a + B->i[i] + shift; 749da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 750da3a660dSBarry Smith x[i] = omega*(sum/d); 751da3a660dSBarry Smith } 75264119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 75378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 754da3a660dSBarry Smith 755da3a660dSBarry Smith /* t = b - (2*E - D)x */ 756da3a660dSBarry Smith v = A->a; 757dbb450caSBarry Smith for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ + shift])*x[i]; } 758da3a660dSBarry Smith 759da3a660dSBarry Smith /* t = (E + L)^{-1}t */ 760dbb450caSBarry Smith ts = t + shift; /* shifted by one for index start of a or mat->j*/ 761da3a660dSBarry Smith diag = A->diag; 762da3a660dSBarry Smith VecSet(&zero,mat->lvec); 76364119d58SLois Curfman McInnes ierr = VecPipelineBegin(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 76478b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 765da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 766da3a660dSBarry Smith n = diag[i] - A->i[i]; 767dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 768dbb450caSBarry Smith v = A->a + A->i[i] + shift; 769da3a660dSBarry Smith sum = t[i]; 770da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ts,v,idx,n); 771dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 772da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 773dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 774dbb450caSBarry Smith v = B->a + B->i[i] + shift; 775da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 776da3a660dSBarry Smith t[i] = omega*(sum/d); 777da3a660dSBarry Smith } 77864119d58SLois Curfman McInnes ierr = VecPipelineEnd(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 77978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 780da3a660dSBarry Smith /* x = x + t */ 781da3a660dSBarry Smith for ( i=0; i<m; i++ ) { x[i] += t[i]; } 782da3a660dSBarry Smith VecDestroy(tt); 783da3a660dSBarry Smith return 0; 784da3a660dSBarry Smith } 785da3a660dSBarry Smith 7861eb62cbbSBarry Smith 787d6dfbf8fSBarry Smith if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){ 788da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 789da3a660dSBarry Smith VecSet(&zero,mat->lvec); VecSet(&zero,xx); 790da3a660dSBarry Smith } 791da3a660dSBarry Smith else { 79264119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 79378b31e54SBarry Smith CHKERRQ(ierr); 79464119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 79578b31e54SBarry Smith CHKERRQ(ierr); 796da3a660dSBarry Smith } 797d6dfbf8fSBarry Smith while (its--) { 798d6dfbf8fSBarry Smith /* go down through the rows */ 79964119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 80078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 801d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 802d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 803dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 804dbb450caSBarry Smith v = A->a + A->i[i] + shift; 805d6dfbf8fSBarry Smith sum = b[i]; 806d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 807dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 808d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 809dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 810dbb450caSBarry Smith v = B->a + B->i[i] + shift; 811d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 812d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 813d6dfbf8fSBarry Smith } 81464119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 81578b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 816d6dfbf8fSBarry Smith /* come up through the rows */ 81764119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 81878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 819d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 820d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 821dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 822dbb450caSBarry Smith v = A->a + A->i[i] + shift; 823d6dfbf8fSBarry Smith sum = b[i]; 824d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 825dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 826d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 827dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 828dbb450caSBarry Smith v = B->a + B->i[i] + shift; 829d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 830d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 831d6dfbf8fSBarry Smith } 83264119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 83378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 834d6dfbf8fSBarry Smith } 835d6dfbf8fSBarry Smith } 836d6dfbf8fSBarry Smith else if (flag & SOR_FORWARD_SWEEP){ 837da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 838da3a660dSBarry Smith VecSet(&zero,mat->lvec); 83964119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 84078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 841da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 842da3a660dSBarry Smith n = diag[i] - A->i[i]; 843dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 844dbb450caSBarry Smith v = A->a + A->i[i] + shift; 845da3a660dSBarry Smith sum = b[i]; 846da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 847dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 848da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 849dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 850dbb450caSBarry Smith v = B->a + B->i[i] + shift; 851da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 852da3a660dSBarry Smith x[i] = omega*(sum/d); 853da3a660dSBarry Smith } 85464119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 85578b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 856da3a660dSBarry Smith its--; 857da3a660dSBarry Smith } 858d6dfbf8fSBarry Smith while (its--) { 85964119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 86078b31e54SBarry Smith CHKERRQ(ierr); 86164119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 86278b31e54SBarry Smith CHKERRQ(ierr); 86364119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 86478b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 865d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 866d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 867dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 868dbb450caSBarry Smith v = A->a + A->i[i] + shift; 869d6dfbf8fSBarry Smith sum = b[i]; 870d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 871dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 872d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 873dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 874dbb450caSBarry Smith v = B->a + B->i[i] + shift; 875d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 876d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 877d6dfbf8fSBarry Smith } 87864119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 87978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 880d6dfbf8fSBarry Smith } 881d6dfbf8fSBarry Smith } 882d6dfbf8fSBarry Smith else if (flag & SOR_BACKWARD_SWEEP){ 883da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 884da3a660dSBarry Smith VecSet(&zero,mat->lvec); 88564119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 88678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 887da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 888da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 889dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 890dbb450caSBarry Smith v = A->a + diag[i] + !shift; 891da3a660dSBarry Smith sum = b[i]; 892da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 893dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 894da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 895dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 896dbb450caSBarry Smith v = B->a + B->i[i] + shift; 897da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 898da3a660dSBarry Smith x[i] = omega*(sum/d); 899da3a660dSBarry Smith } 90064119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 90178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 902da3a660dSBarry Smith its--; 903da3a660dSBarry Smith } 904d6dfbf8fSBarry Smith while (its--) { 90564119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN, 90678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 90764119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN, 90878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 90964119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 91078b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 911d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 912d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 913dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 914dbb450caSBarry Smith v = A->a + A->i[i] + shift; 915d6dfbf8fSBarry Smith sum = b[i]; 916d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 917dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 918d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 919dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 920dbb450caSBarry Smith v = B->a + B->i[i] + shift; 921d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 922d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 923d6dfbf8fSBarry Smith } 92464119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 92578b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 926d6dfbf8fSBarry Smith } 927d6dfbf8fSBarry Smith } 928d6dfbf8fSBarry Smith else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 929da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 930*44cd7ae7SLois Curfman McInnes return MatRelax_SeqAIJ(mat->A,bb,omega,flag,fshift,its,xx); 931da3a660dSBarry Smith } 93264119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 93378b31e54SBarry Smith CHKERRQ(ierr); 93464119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 93578b31e54SBarry Smith CHKERRQ(ierr); 936d6dfbf8fSBarry Smith while (its--) { 937d6dfbf8fSBarry Smith /* go down through the rows */ 938d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 939d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 940dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 941dbb450caSBarry Smith v = A->a + A->i[i] + shift; 942d6dfbf8fSBarry Smith sum = b[i]; 943d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 944dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 945d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 946dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 947dbb450caSBarry Smith v = B->a + B->i[i] + shift; 948d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 949d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 950d6dfbf8fSBarry Smith } 951d6dfbf8fSBarry Smith /* come up through the rows */ 952d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 953d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 954dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 955dbb450caSBarry Smith v = A->a + A->i[i] + shift; 956d6dfbf8fSBarry Smith sum = b[i]; 957d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 958dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 959d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 960dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 961dbb450caSBarry Smith v = B->a + B->i[i] + shift; 962d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 963d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 964d6dfbf8fSBarry Smith } 965d6dfbf8fSBarry Smith } 966d6dfbf8fSBarry Smith } 967d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 968da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 969*44cd7ae7SLois Curfman McInnes return MatRelax_SeqAIJ(mat->A,bb,omega,flag,fshift,its,xx); 970da3a660dSBarry Smith } 97164119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 97278b31e54SBarry Smith CHKERRQ(ierr); 97364119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 97478b31e54SBarry Smith CHKERRQ(ierr); 975d6dfbf8fSBarry Smith while (its--) { 976d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 977d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 978dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 979dbb450caSBarry Smith v = A->a + A->i[i] + shift; 980d6dfbf8fSBarry Smith sum = b[i]; 981d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 982dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 983d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 984dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 985dbb450caSBarry Smith v = B->a + B->i[i] + shift; 986d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 987d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 988d6dfbf8fSBarry Smith } 989d6dfbf8fSBarry Smith } 990d6dfbf8fSBarry Smith } 991d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 992da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 993*44cd7ae7SLois Curfman McInnes return MatRelax_SeqAIJ(mat->A,bb,omega,flag,fshift,its,xx); 994da3a660dSBarry Smith } 99564119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL, 99678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 99764119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL, 99878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 999d6dfbf8fSBarry Smith while (its--) { 1000d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 1001d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 1002dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 1003dbb450caSBarry Smith v = A->a + A->i[i] + shift; 1004d6dfbf8fSBarry Smith sum = b[i]; 1005d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 1006dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 1007d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 1008dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 1009dbb450caSBarry Smith v = B->a + B->i[i] + shift; 1010d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 1011d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 1012d6dfbf8fSBarry Smith } 1013d6dfbf8fSBarry Smith } 1014d6dfbf8fSBarry Smith } 10158a729477SBarry Smith return 0; 10168a729477SBarry Smith } 1017a66be287SLois Curfman McInnes 1018fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz, 1019fc76ce87SLois Curfman McInnes int *nzalloc,int *mem) 1020a66be287SLois Curfman McInnes { 1021a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1022a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 1023a66be287SLois Curfman McInnes int ierr, isend[3], irecv[3], nzA, nzallocA, memA; 1024a66be287SLois Curfman McInnes 102578b31e54SBarry Smith ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr); 102678b31e54SBarry Smith ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr); 1027a66be287SLois Curfman McInnes isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA; 1028a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 1029bcd2baecSBarry Smith if (nz) *nz = isend[0]; 1030bcd2baecSBarry Smith if (nzalloc) *nzalloc = isend[1]; 1031bcd2baecSBarry Smith if (mem) *mem = isend[2]; 1032a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1033d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_MAX,matin->comm); 1034bcd2baecSBarry Smith if (nz) *nz = irecv[0]; 1035bcd2baecSBarry Smith if (nzalloc) *nzalloc = irecv[1]; 1036bcd2baecSBarry Smith if (mem) *mem = irecv[2]; 1037a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1038d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_SUM,matin->comm); 1039bcd2baecSBarry Smith if (nz) *nz = irecv[0]; 1040bcd2baecSBarry Smith if (nzalloc) *nzalloc = irecv[1]; 1041bcd2baecSBarry Smith if (mem) *mem = irecv[2]; 1042a66be287SLois Curfman McInnes } 1043a66be287SLois Curfman McInnes return 0; 1044a66be287SLois Curfman McInnes } 1045a66be287SLois Curfman McInnes 1046299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*); 1047299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*); 1048299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double); 1049299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *); 1050299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec); 1051299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec); 1052299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec); 1053299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec); 1054299609e3SLois Curfman McInnes 1055416022c9SBarry Smith static int MatSetOption_MPIAIJ(Mat A,MatOption op) 1056c74985f6SBarry Smith { 1057c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1058c74985f6SBarry Smith 1059c0bbcb79SLois Curfman McInnes if (op == NO_NEW_NONZERO_LOCATIONS || 1060c0bbcb79SLois Curfman McInnes op == YES_NEW_NONZERO_LOCATIONS || 1061c0bbcb79SLois Curfman McInnes op == COLUMNS_SORTED || 1062c0bbcb79SLois Curfman McInnes op == ROW_ORIENTED) { 1063c0bbcb79SLois Curfman McInnes MatSetOption(a->A,op); 1064c0bbcb79SLois Curfman McInnes MatSetOption(a->B,op); 1065c74985f6SBarry Smith } 1066c0bbcb79SLois Curfman McInnes else if (op == ROWS_SORTED || 1067c0bbcb79SLois Curfman McInnes op == SYMMETRIC_MATRIX || 1068c0bbcb79SLois Curfman McInnes op == STRUCTURALLY_SYMMETRIC_MATRIX || 1069c0bbcb79SLois Curfman McInnes op == YES_NEW_DIAGONALS) 107094a424c1SBarry Smith PLogInfo(A,"Info:MatSetOption_MPIAIJ:Option ignored\n"); 10714b0e389bSBarry Smith else if (op == COLUMN_ORIENTED) { 10724b0e389bSBarry Smith a->roworiented = 0; 10734b0e389bSBarry Smith MatSetOption(a->A,op); 10744b0e389bSBarry Smith MatSetOption(a->B,op); 10754b0e389bSBarry Smith } 1076c0bbcb79SLois Curfman McInnes else if (op == NO_NEW_DIAGONALS) 10774d39ef84SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:NO_NEW_DIAGONALS");} 1078c0bbcb79SLois Curfman McInnes else 10794d39ef84SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:unknown option");} 1080c74985f6SBarry Smith return 0; 1081c74985f6SBarry Smith } 1082c74985f6SBarry Smith 1083d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n) 1084c74985f6SBarry Smith { 108544a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1086c74985f6SBarry Smith *m = mat->M; *n = mat->N; 1087c74985f6SBarry Smith return 0; 1088c74985f6SBarry Smith } 1089c74985f6SBarry Smith 1090d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n) 1091c74985f6SBarry Smith { 109244a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1093b7c46309SBarry Smith *m = mat->m; *n = mat->N; 1094c74985f6SBarry Smith return 0; 1095c74985f6SBarry Smith } 1096c74985f6SBarry Smith 1097d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n) 1098c74985f6SBarry Smith { 109944a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1100c74985f6SBarry Smith *m = mat->rstart; *n = mat->rend; 1101c74985f6SBarry Smith return 0; 1102c74985f6SBarry Smith } 1103c74985f6SBarry Smith 11046d84be18SBarry Smith extern int MatGetRow_SeqAIJ(Mat,int,int*,int**,Scalar**); 11056d84be18SBarry Smith extern int MatRestoreRow_SeqAIJ(Mat,int,int*,int**,Scalar**); 11066d84be18SBarry Smith 11076d84be18SBarry Smith int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 110839e00950SLois Curfman McInnes { 1109154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 111070f0671dSBarry Smith Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 1111154123eaSLois Curfman McInnes int i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart; 1112154123eaSLois Curfman McInnes int nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend; 111370f0671dSBarry Smith int *cmap, *idx_p; 111439e00950SLois Curfman McInnes 11157a0afa10SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(1,"MatGetRow_MPIAIJ:Already active"); 11167a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 11177a0afa10SBarry Smith 111870f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 11197a0afa10SBarry Smith /* 11207a0afa10SBarry Smith allocate enough space to hold information from the longest row. 11217a0afa10SBarry Smith */ 11227a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *) mat->A->data,*Ba = (Mat_SeqAIJ *) mat->B->data; 11237a0afa10SBarry Smith int max = 1,n = mat->n,tmp; 11247a0afa10SBarry Smith for ( i=0; i<n; i++ ) { 11257a0afa10SBarry Smith tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 11267a0afa10SBarry Smith if (max < tmp) { max = tmp; } 11277a0afa10SBarry Smith } 11287a0afa10SBarry Smith mat->rowvalues = (Scalar *) PetscMalloc( max*(sizeof(int)+sizeof(Scalar))); 11297a0afa10SBarry Smith CHKPTRQ(mat->rowvalues); 11307a0afa10SBarry Smith mat->rowindices = (int *) (mat->rowvalues + max); 11317a0afa10SBarry Smith } 11327a0afa10SBarry Smith 11337a0afa10SBarry Smith 1134b49de8d1SLois Curfman McInnes if (row < rstart || row >= rend) SETERRQ(1,"MatGetRow_MPIAIJ:Only local rows") 1135abc0e9e4SLois Curfman McInnes lrow = row - rstart; 113639e00950SLois Curfman McInnes 1137154123eaSLois Curfman McInnes pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1138154123eaSLois Curfman McInnes if (!v) {pvA = 0; pvB = 0;} 1139154123eaSLois Curfman McInnes if (!idx) {pcA = 0; if (!v) pcB = 0;} 11406d84be18SBarry Smith ierr = MatGetRow_SeqAIJ(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 11416d84be18SBarry Smith ierr = MatGetRow_SeqAIJ(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1142154123eaSLois Curfman McInnes nztot = nzA + nzB; 1143154123eaSLois Curfman McInnes 114470f0671dSBarry Smith cmap = mat->garray; 1145154123eaSLois Curfman McInnes if (v || idx) { 1146154123eaSLois Curfman McInnes if (nztot) { 1147154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 114870f0671dSBarry Smith int imark = -1; 1149154123eaSLois Curfman McInnes if (v) { 115070f0671dSBarry Smith *v = v_p = mat->rowvalues; 115139e00950SLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 115270f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1153154123eaSLois Curfman McInnes else break; 1154154123eaSLois Curfman McInnes } 1155154123eaSLois Curfman McInnes imark = i; 115670f0671dSBarry Smith for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 115770f0671dSBarry Smith for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 1158154123eaSLois Curfman McInnes } 1159154123eaSLois Curfman McInnes if (idx) { 116070f0671dSBarry Smith *idx = idx_p = mat->rowindices; 116170f0671dSBarry Smith if (imark > -1) { 116270f0671dSBarry Smith for ( i=0; i<imark; i++ ) { 116370f0671dSBarry Smith idx_p[i] = cmap[cworkB[i]]; 116470f0671dSBarry Smith } 116570f0671dSBarry Smith } else { 1166154123eaSLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 116770f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1168154123eaSLois Curfman McInnes else break; 1169154123eaSLois Curfman McInnes } 1170154123eaSLois Curfman McInnes imark = i; 117170f0671dSBarry Smith } 117270f0671dSBarry Smith for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart + cworkA[i]; 117370f0671dSBarry Smith for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]]; 117439e00950SLois Curfman McInnes } 117539e00950SLois Curfman McInnes } 117639e00950SLois Curfman McInnes else {*idx = 0; *v=0;} 1177154123eaSLois Curfman McInnes } 117839e00950SLois Curfman McInnes *nz = nztot; 11796d84be18SBarry Smith ierr = MatRestoreRow_SeqAIJ(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 11806d84be18SBarry Smith ierr = MatRestoreRow_SeqAIJ(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 118139e00950SLois Curfman McInnes return 0; 118239e00950SLois Curfman McInnes } 118339e00950SLois Curfman McInnes 11846d84be18SBarry Smith int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 118539e00950SLois Curfman McInnes { 11867a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 11877a0afa10SBarry Smith if (aij->getrowactive == PETSC_FALSE) { 11887a0afa10SBarry Smith SETERRQ(1,"MatRestoreRow_MPIAIJ:MatGetRow not called"); 11897a0afa10SBarry Smith } 11907a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 119139e00950SLois Curfman McInnes return 0; 119239e00950SLois Curfman McInnes } 119339e00950SLois Curfman McInnes 1194cddf8d76SBarry Smith static int MatNorm_MPIAIJ(Mat mat,NormType type,double *norm) 1195855ac2c5SLois Curfman McInnes { 1196855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1197ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data; 1198416022c9SBarry Smith int ierr, i, j, cstart = aij->cstart,shift = amat->indexshift; 1199416022c9SBarry Smith double sum = 0.0; 120004ca555eSLois Curfman McInnes Scalar *v; 120104ca555eSLois Curfman McInnes 120217699dbbSLois Curfman McInnes if (aij->size == 1) { 120314183eadSLois Curfman McInnes ierr = MatNorm(aij->A,type,norm); CHKERRQ(ierr); 120437fa93a5SLois Curfman McInnes } else { 120504ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 120604ca555eSLois Curfman McInnes v = amat->a; 120704ca555eSLois Curfman McInnes for (i=0; i<amat->nz; i++ ) { 120804ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 120904ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 121004ca555eSLois Curfman McInnes #else 121104ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 121204ca555eSLois Curfman McInnes #endif 121304ca555eSLois Curfman McInnes } 121404ca555eSLois Curfman McInnes v = bmat->a; 121504ca555eSLois Curfman McInnes for (i=0; i<bmat->nz; i++ ) { 121604ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 121704ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 121804ca555eSLois Curfman McInnes #else 121904ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 122004ca555eSLois Curfman McInnes #endif 122104ca555eSLois Curfman McInnes } 12226d84be18SBarry Smith MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm); 122304ca555eSLois Curfman McInnes *norm = sqrt(*norm); 122404ca555eSLois Curfman McInnes } 122504ca555eSLois Curfman McInnes else if (type == NORM_1) { /* max column norm */ 122604ca555eSLois Curfman McInnes double *tmp, *tmp2; 122704ca555eSLois Curfman McInnes int *jj, *garray = aij->garray; 12280452661fSBarry Smith tmp = (double *) PetscMalloc( aij->N*sizeof(double) ); CHKPTRQ(tmp); 12290452661fSBarry Smith tmp2 = (double *) PetscMalloc( aij->N*sizeof(double) ); CHKPTRQ(tmp2); 1230cddf8d76SBarry Smith PetscMemzero(tmp,aij->N*sizeof(double)); 123104ca555eSLois Curfman McInnes *norm = 0.0; 123204ca555eSLois Curfman McInnes v = amat->a; jj = amat->j; 123304ca555eSLois Curfman McInnes for ( j=0; j<amat->nz; j++ ) { 1234579c6b6fSBarry Smith tmp[cstart + *jj++ + shift] += PetscAbsScalar(*v); v++; 123504ca555eSLois Curfman McInnes } 123604ca555eSLois Curfman McInnes v = bmat->a; jj = bmat->j; 123704ca555eSLois Curfman McInnes for ( j=0; j<bmat->nz; j++ ) { 1238579c6b6fSBarry Smith tmp[garray[*jj++ + shift]] += PetscAbsScalar(*v); v++; 123904ca555eSLois Curfman McInnes } 12406d84be18SBarry Smith MPI_Allreduce(tmp,tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm); 124104ca555eSLois Curfman McInnes for ( j=0; j<aij->N; j++ ) { 124204ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 124304ca555eSLois Curfman McInnes } 12440452661fSBarry Smith PetscFree(tmp); PetscFree(tmp2); 124504ca555eSLois Curfman McInnes } 124604ca555eSLois Curfman McInnes else if (type == NORM_INFINITY) { /* max row norm */ 1247515d9167SLois Curfman McInnes double ntemp = 0.0; 124804ca555eSLois Curfman McInnes for ( j=0; j<amat->m; j++ ) { 1249dbb450caSBarry Smith v = amat->a + amat->i[j] + shift; 125004ca555eSLois Curfman McInnes sum = 0.0; 125104ca555eSLois Curfman McInnes for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) { 1252cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 125304ca555eSLois Curfman McInnes } 1254dbb450caSBarry Smith v = bmat->a + bmat->i[j] + shift; 125504ca555eSLois Curfman McInnes for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) { 1256cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 125704ca555eSLois Curfman McInnes } 1258515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 125904ca555eSLois Curfman McInnes } 12606d84be18SBarry Smith MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,mat->comm); 126104ca555eSLois Curfman McInnes } 126204ca555eSLois Curfman McInnes else { 1263515d9167SLois Curfman McInnes SETERRQ(1,"MatNorm_MPIAIJ:No support for two norm"); 126404ca555eSLois Curfman McInnes } 126537fa93a5SLois Curfman McInnes } 1266855ac2c5SLois Curfman McInnes return 0; 1267855ac2c5SLois Curfman McInnes } 1268855ac2c5SLois Curfman McInnes 12690de55854SLois Curfman McInnes static int MatTranspose_MPIAIJ(Mat A,Mat *matout) 1270b7c46309SBarry Smith { 1271b7c46309SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1272dbb450caSBarry Smith Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data; 1273416022c9SBarry Smith int ierr,shift = Aloc->indexshift; 1274416022c9SBarry Smith Mat B; 1275b7c46309SBarry Smith int M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct; 1276b7c46309SBarry Smith Scalar *array; 1277b7c46309SBarry Smith 12783638b69dSLois Curfman McInnes if (matout == PETSC_NULL && M != N) 12793638b69dSLois Curfman McInnes SETERRQ(1,"MatTranspose_MPIAIJ:Square matrix only for in-place"); 1280b4fd4287SBarry Smith ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,PETSC_NULL,0, 1281b4fd4287SBarry Smith PETSC_NULL,&B); CHKERRQ(ierr); 1282b7c46309SBarry Smith 1283b7c46309SBarry Smith /* copy over the A part */ 1284ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->A->data; 1285b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1286b7c46309SBarry Smith row = a->rstart; 1287dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;} 1288b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1289416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1290b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 1291b7c46309SBarry Smith } 1292b7c46309SBarry Smith aj = Aloc->j; 12934af08d9eSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= a->cstart + shift;} 1294b7c46309SBarry Smith 1295b7c46309SBarry Smith /* copy over the B part */ 1296ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->B->data; 1297b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1298b7c46309SBarry Smith row = a->rstart; 12990452661fSBarry Smith ct = cols = (int *) PetscMalloc( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols); 1300dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];} 1301b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1302416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1303b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 1304b7c46309SBarry Smith } 13050452661fSBarry Smith PetscFree(ct); 1306b7c46309SBarry Smith ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 1307b7c46309SBarry Smith ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 13083638b69dSLois Curfman McInnes if (matout != PETSC_NULL) { 13090de55854SLois Curfman McInnes *matout = B; 13100de55854SLois Curfman McInnes } else { 13110de55854SLois Curfman McInnes /* This isn't really an in-place transpose .... but free data structures from a */ 13120452661fSBarry Smith PetscFree(a->rowners); 13130de55854SLois Curfman McInnes ierr = MatDestroy(a->A); CHKERRQ(ierr); 13140de55854SLois Curfman McInnes ierr = MatDestroy(a->B); CHKERRQ(ierr); 13150452661fSBarry Smith if (a->colmap) PetscFree(a->colmap); 13160452661fSBarry Smith if (a->garray) PetscFree(a->garray); 13170de55854SLois Curfman McInnes if (a->lvec) VecDestroy(a->lvec); 1318a56f8943SBarry Smith if (a->Mvctx) VecScatterDestroy(a->Mvctx); 13190452661fSBarry Smith PetscFree(a); 1320416022c9SBarry Smith PetscMemcpy(A,B,sizeof(struct _Mat)); 13210452661fSBarry Smith PetscHeaderDestroy(B); 13220de55854SLois Curfman McInnes } 1323b7c46309SBarry Smith return 0; 1324b7c46309SBarry Smith } 1325b7c46309SBarry Smith 1326682d7d0cSBarry Smith extern int MatPrintHelp_SeqAIJ(Mat); 1327682d7d0cSBarry Smith static int MatPrintHelp_MPIAIJ(Mat A) 1328682d7d0cSBarry Smith { 1329682d7d0cSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*) A->data; 1330682d7d0cSBarry Smith 1331682d7d0cSBarry Smith if (!a->rank) return MatPrintHelp_SeqAIJ(a->A); 1332682d7d0cSBarry Smith else return 0; 1333682d7d0cSBarry Smith } 1334682d7d0cSBarry Smith 1335fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *); 13363d1612f7SBarry Smith static int MatConvertSameType_MPIAIJ(Mat,Mat *,int); 13372f86bd48SSatish Balay extern int MatIncreaseOverlap_MPIAIJ(Mat , int, IS *, int); 1338598137ffSSatish Balay int MatGetSubMatrices_MPIAIJ (Mat ,int , IS *,IS *,MatGetSubMatrixCall,Mat **); 13398a729477SBarry Smith /* -------------------------------------------------------------------*/ 13402ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ, 134139e00950SLois Curfman McInnes MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ, 134244a69424SLois Curfman McInnes MatMult_MPIAIJ,MatMultAdd_MPIAIJ, 134344a69424SLois Curfman McInnes MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ, 1344299609e3SLois Curfman McInnes MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ, 1345299609e3SLois Curfman McInnes MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ, 1346299609e3SLois Curfman McInnes MatLUFactor_MPIAIJ,0, 134744a69424SLois Curfman McInnes MatRelax_MPIAIJ, 1348b7c46309SBarry Smith MatTranspose_MPIAIJ, 1349a66be287SLois Curfman McInnes MatGetInfo_MPIAIJ,0, 1350855ac2c5SLois Curfman McInnes MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ, 1351ee50ffe9SBarry Smith MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ, 13521eb62cbbSBarry Smith 0, 1353299609e3SLois Curfman McInnes MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ, 1354299609e3SLois Curfman McInnes MatGetReordering_MPIAIJ, 1355299609e3SLois Curfman McInnes MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0, 1356d1710a03SLois Curfman McInnes MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ, 1357299609e3SLois Curfman McInnes MatILUFactorSymbolic_MPIAIJ,0, 13583d1612f7SBarry Smith 0,0,MatConvert_MPIAIJ,0,0,MatConvertSameType_MPIAIJ,0,0, 1359b49de8d1SLois Curfman McInnes 0,0,0, 1360598137ffSSatish Balay MatGetSubMatrices_MPIAIJ,MatIncreaseOverlap_MPIAIJ,MatGetValues_MPIAIJ,0, 1361052efed2SBarry Smith MatPrintHelp_MPIAIJ, 1362052efed2SBarry Smith MatScale_MPIAIJ}; 13638a729477SBarry Smith 13641987afe7SBarry Smith /*@C 1365ff756334SLois Curfman McInnes MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format 13663a511b96SLois Curfman McInnes (the default parallel PETSc format). For good matrix assembly performance 13673a511b96SLois Curfman McInnes the user should preallocate the matrix storage by setting the parameters 13683a511b96SLois Curfman McInnes d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 13693a511b96SLois Curfman McInnes performance can be increased by more than a factor of 50. 13708a729477SBarry Smith 13718a729477SBarry Smith Input Parameters: 13721eb62cbbSBarry Smith . comm - MPI communicator 13737d3e4905SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 13747d3e4905SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated 13757d3e4905SLois Curfman McInnes if N is given) 13767d3e4905SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 13777d3e4905SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated 13787d3e4905SLois Curfman McInnes if n is given) 1379ab693e5aSLois Curfman McInnes . d_nz - number of nonzeros per row in diagonal portion of local submatrix 1380ff756334SLois Curfman McInnes (same for all local rows) 1381ab693e5aSLois Curfman McInnes . d_nzz - number of nonzeros per row in diagonal portion of local submatrix 1382ab693e5aSLois Curfman McInnes or null (possibly different for each row). You must leave room 1383ab693e5aSLois Curfman McInnes for the diagonal entry even if it is zero. 1384ab693e5aSLois Curfman McInnes . o_nz - number of nonzeros per row in off-diagonal portion of local 1385ab693e5aSLois Curfman McInnes submatrix (same for all local rows). 1386ab693e5aSLois Curfman McInnes . o_nzz - number of nonzeros per row in off-diagonal portion of local 1387ab693e5aSLois Curfman McInnes submatrix or null (possibly different for each row). 13888a729477SBarry Smith 1389ff756334SLois Curfman McInnes Output Parameter: 1390*44cd7ae7SLois Curfman McInnes . A - the matrix 13918a729477SBarry Smith 1392ff756334SLois Curfman McInnes Notes: 1393ff756334SLois Curfman McInnes The AIJ format (also called the Yale sparse matrix format or 1394ff756334SLois Curfman McInnes compressed row storage), is fully compatible with standard Fortran 77 13950002213bSLois Curfman McInnes storage. That is, the stored row and column indices can begin at 13960002213bSLois Curfman McInnes either one (as in Fortran) or zero. See the users manual for details. 1397ff756334SLois Curfman McInnes 1398ff756334SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 1399ff756334SLois Curfman McInnes (possibly both). 1400ff756334SLois Curfman McInnes 14015511cfe3SLois Curfman McInnes By default, this format uses inodes (identical nodes) when possible. 14025511cfe3SLois Curfman McInnes We search for consecutive rows with the same nonzero structure, thereby 14035511cfe3SLois Curfman McInnes reusing matrix information to achieve increased efficiency. 14045511cfe3SLois Curfman McInnes 14055511cfe3SLois Curfman McInnes Options Database Keys: 14065511cfe3SLois Curfman McInnes $ -mat_aij_no_inode - Do not use inodes 14076e62573dSLois Curfman McInnes $ -mat_aij_inode_limit <limit> - Set inode limit. 14086e62573dSLois Curfman McInnes $ (max limit=5) 14096e62573dSLois Curfman McInnes $ -mat_aij_oneindex - Internally use indexing starting at 1 14106e62573dSLois Curfman McInnes $ rather than 0. Note: When calling MatSetValues(), 14116e62573dSLois Curfman McInnes $ the user still MUST index entries starting at 0! 14125511cfe3SLois Curfman McInnes 1413e0245417SLois Curfman McInnes Storage Information: 1414e0245417SLois Curfman McInnes For a square global matrix we define each processor's diagonal portion 1415e0245417SLois Curfman McInnes to be its local rows and the corresponding columns (a square submatrix); 1416e0245417SLois Curfman McInnes each processor's off-diagonal portion encompasses the remainder of the 1417e0245417SLois Curfman McInnes local matrix (a rectangular submatrix). 1418e0245417SLois Curfman McInnes 1419e0245417SLois Curfman McInnes The user can specify preallocated storage for the diagonal part of 14205ace5be8SLois Curfman McInnes the local submatrix with either d_nz or d_nnz (not both). Set 14215ace5be8SLois Curfman McInnes d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 14225ace5be8SLois Curfman McInnes memory allocation. Likewise, specify preallocated storage for the 14235ace5be8SLois Curfman McInnes off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1424ff756334SLois Curfman McInnes 14255511cfe3SLois Curfman McInnes Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 14265511cfe3SLois Curfman McInnes the figure below we depict these three local rows and all columns (0-11). 14272191d07cSBarry Smith 1428b810aeb4SBarry Smith $ 0 1 2 3 4 5 6 7 8 9 10 11 1429b810aeb4SBarry Smith $ ------------------- 14305511cfe3SLois Curfman McInnes $ row 3 | o o o d d d o o o o o o 14315511cfe3SLois Curfman McInnes $ row 4 | o o o d d d o o o o o o 14325511cfe3SLois Curfman McInnes $ row 5 | o o o d d d o o o o o o 14335511cfe3SLois Curfman McInnes $ ------------------- 1434b810aeb4SBarry Smith $ 1435b810aeb4SBarry Smith 14365511cfe3SLois Curfman McInnes Thus, any entries in the d locations are stored in the d (diagonal) 14375511cfe3SLois Curfman McInnes submatrix, and any entries in the o locations are stored in the 14385511cfe3SLois Curfman McInnes o (off-diagonal) submatrix. Note that the d and the o submatrices are 14395511cfe3SLois Curfman McInnes stored simply in the MATSEQAIJ format for compressed row storage. 14405511cfe3SLois Curfman McInnes 14415511cfe3SLois Curfman McInnes Now d_nz should indicate the number of nonzeros per row in the d matrix, 14425511cfe3SLois Curfman McInnes and o_nz should indicate the number of nonzeros per row in the o matrix. 14435511cfe3SLois Curfman McInnes In general, for PDE problems in which most nonzeros are near the diagonal, 14443a511b96SLois Curfman McInnes one expects d_nz >> o_nz. For additional details, see the users manual 14453a511b96SLois Curfman McInnes chapter on matrices and the file $(PETSC_DIR)/Performance. 14463a511b96SLois Curfman McInnes 1447dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel 1448ff756334SLois Curfman McInnes 1449fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues() 14508a729477SBarry Smith @*/ 14511eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N, 1452*44cd7ae7SLois Curfman McInnes int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 14538a729477SBarry Smith { 1454*44cd7ae7SLois Curfman McInnes Mat B; 1455*44cd7ae7SLois Curfman McInnes Mat_MPIAIJ *b; 14566abc6512SBarry Smith int ierr, i,sum[2],work[2]; 1457416022c9SBarry Smith 1458*44cd7ae7SLois Curfman McInnes *A = 0; 1459*44cd7ae7SLois Curfman McInnes PetscHeaderCreate(B,_Mat,MAT_COOKIE,MATMPIAIJ,comm); 1460*44cd7ae7SLois Curfman McInnes PLogObjectCreate(B); 1461*44cd7ae7SLois Curfman McInnes B->data = (void *) (b = PetscNew(Mat_MPIAIJ)); CHKPTRQ(b); 1462*44cd7ae7SLois Curfman McInnes PetscMemzero(b,sizeof(Mat_MPIAIJ)); 1463*44cd7ae7SLois Curfman McInnes PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps)); 1464*44cd7ae7SLois Curfman McInnes B->destroy = MatDestroy_MPIAIJ; 1465*44cd7ae7SLois Curfman McInnes B->view = MatView_MPIAIJ; 1466*44cd7ae7SLois Curfman McInnes B->factor = 0; 1467*44cd7ae7SLois Curfman McInnes B->assembled = PETSC_FALSE; 1468d6dfbf8fSBarry Smith 1469*44cd7ae7SLois Curfman McInnes b->insertmode = NOT_SET_VALUES; 1470*44cd7ae7SLois Curfman McInnes MPI_Comm_rank(comm,&b->rank); 1471*44cd7ae7SLois Curfman McInnes MPI_Comm_size(comm,&b->size); 14721eb62cbbSBarry Smith 1473b4fd4287SBarry Smith if (m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) 14742e0155e0SLois Curfman McInnes SETERRQ(1,"MatCreateMPIAIJ:Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 14751987afe7SBarry Smith 1476dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 14771eb62cbbSBarry Smith work[0] = m; work[1] = n; 1478d65a2f8fSBarry Smith MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm ); 1479dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE) M = sum[0]; 1480dbd7a890SLois Curfman McInnes if (N == PETSC_DECIDE) N = sum[1]; 14811eb62cbbSBarry Smith } 1482*44cd7ae7SLois Curfman McInnes if (m == PETSC_DECIDE) {m = M/b->size + ((M % b->size) > b->rank);} 1483*44cd7ae7SLois Curfman McInnes if (n == PETSC_DECIDE) {n = N/b->size + ((N % b->size) > b->rank);} 1484*44cd7ae7SLois Curfman McInnes b->m = m; B->m = m; 1485*44cd7ae7SLois Curfman McInnes b->n = n; B->n = n; 1486*44cd7ae7SLois Curfman McInnes b->N = N; B->N = N; 1487*44cd7ae7SLois Curfman McInnes b->M = M; B->M = M; 14881eb62cbbSBarry Smith 14891eb62cbbSBarry Smith /* build local table of row and column ownerships */ 1490*44cd7ae7SLois Curfman McInnes b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners); 1491*44cd7ae7SLois Curfman McInnes PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ)); 1492*44cd7ae7SLois Curfman McInnes b->cowners = b->rowners + b->size + 1; 1493*44cd7ae7SLois Curfman McInnes MPI_Allgather(&m,1,MPI_INT,b->rowners+1,1,MPI_INT,comm); 1494*44cd7ae7SLois Curfman McInnes b->rowners[0] = 0; 1495*44cd7ae7SLois Curfman McInnes for ( i=2; i<=b->size; i++ ) { 1496*44cd7ae7SLois Curfman McInnes b->rowners[i] += b->rowners[i-1]; 14978a729477SBarry Smith } 1498*44cd7ae7SLois Curfman McInnes b->rstart = b->rowners[b->rank]; 1499*44cd7ae7SLois Curfman McInnes b->rend = b->rowners[b->rank+1]; 1500*44cd7ae7SLois Curfman McInnes MPI_Allgather(&n,1,MPI_INT,b->cowners+1,1,MPI_INT,comm); 1501*44cd7ae7SLois Curfman McInnes b->cowners[0] = 0; 1502*44cd7ae7SLois Curfman McInnes for ( i=2; i<=b->size; i++ ) { 1503*44cd7ae7SLois Curfman McInnes b->cowners[i] += b->cowners[i-1]; 15048a729477SBarry Smith } 1505*44cd7ae7SLois Curfman McInnes b->cstart = b->cowners[b->rank]; 1506*44cd7ae7SLois Curfman McInnes b->cend = b->cowners[b->rank+1]; 15078a729477SBarry Smith 15085ace5be8SLois Curfman McInnes if (d_nz == PETSC_DEFAULT) d_nz = 5; 1509*44cd7ae7SLois Curfman McInnes ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr); 1510*44cd7ae7SLois Curfman McInnes PLogObjectParent(B,b->A); 15117b8455f0SLois Curfman McInnes if (o_nz == PETSC_DEFAULT) o_nz = 0; 1512*44cd7ae7SLois Curfman McInnes ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr); 1513*44cd7ae7SLois Curfman McInnes PLogObjectParent(B,b->B); 15148a729477SBarry Smith 15151eb62cbbSBarry Smith /* build cache for off array entries formed */ 1516*44cd7ae7SLois Curfman McInnes ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr); 1517*44cd7ae7SLois Curfman McInnes b->colmap = 0; 1518*44cd7ae7SLois Curfman McInnes b->garray = 0; 1519*44cd7ae7SLois Curfman McInnes b->roworiented = 1; 15208a729477SBarry Smith 15211eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 1522*44cd7ae7SLois Curfman McInnes b->lvec = 0; 1523*44cd7ae7SLois Curfman McInnes b->Mvctx = 0; 15248a729477SBarry Smith 15257a0afa10SBarry Smith /* stuff for MatGetRow() */ 1526*44cd7ae7SLois Curfman McInnes b->rowindices = 0; 1527*44cd7ae7SLois Curfman McInnes b->rowvalues = 0; 1528*44cd7ae7SLois Curfman McInnes b->getrowactive = PETSC_FALSE; 15297a0afa10SBarry Smith 1530*44cd7ae7SLois Curfman McInnes *A = B; 1531d6dfbf8fSBarry Smith return 0; 1532d6dfbf8fSBarry Smith } 1533c74985f6SBarry Smith 15343d1612f7SBarry Smith static int MatConvertSameType_MPIAIJ(Mat matin,Mat *newmat,int cpvalues) 1535d6dfbf8fSBarry Smith { 1536d6dfbf8fSBarry Smith Mat mat; 1537416022c9SBarry Smith Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data; 153825cdf11fSBarry Smith int ierr, len,flg; 1539d6dfbf8fSBarry Smith 1540416022c9SBarry Smith *newmat = 0; 15410452661fSBarry Smith PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm); 1542a5a9c739SBarry Smith PLogObjectCreate(mat); 15430452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a); 1544416022c9SBarry Smith PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 154544a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 154644a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 1547d6dfbf8fSBarry Smith mat->factor = matin->factor; 1548c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1549d6dfbf8fSBarry Smith 1550*44cd7ae7SLois Curfman McInnes a->m = mat->m = oldmat->m; 1551*44cd7ae7SLois Curfman McInnes a->n = mat->n = oldmat->n; 1552*44cd7ae7SLois Curfman McInnes a->M = mat->M = oldmat->M; 1553*44cd7ae7SLois Curfman McInnes a->N = mat->N = oldmat->N; 1554d6dfbf8fSBarry Smith 1555416022c9SBarry Smith a->rstart = oldmat->rstart; 1556416022c9SBarry Smith a->rend = oldmat->rend; 1557416022c9SBarry Smith a->cstart = oldmat->cstart; 1558416022c9SBarry Smith a->cend = oldmat->cend; 155917699dbbSLois Curfman McInnes a->size = oldmat->size; 156017699dbbSLois Curfman McInnes a->rank = oldmat->rank; 156164119d58SLois Curfman McInnes a->insertmode = NOT_SET_VALUES; 1562bcd2baecSBarry Smith a->rowvalues = 0; 1563bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 1564d6dfbf8fSBarry Smith 15650452661fSBarry Smith a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners); 156617699dbbSLois Curfman McInnes PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ)); 156717699dbbSLois Curfman McInnes PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int)); 1568416022c9SBarry Smith ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 15692ee70a88SLois Curfman McInnes if (oldmat->colmap) { 15700452661fSBarry Smith a->colmap = (int *) PetscMalloc((a->N)*sizeof(int));CHKPTRQ(a->colmap); 1571416022c9SBarry Smith PLogObjectMemory(mat,(a->N)*sizeof(int)); 1572416022c9SBarry Smith PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int)); 1573416022c9SBarry Smith } else a->colmap = 0; 1574ec8511deSBarry Smith if (oldmat->garray && (len = ((Mat_SeqAIJ *) (oldmat->B->data))->n)) { 15750452661fSBarry Smith a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray); 1576464493b3SBarry Smith PLogObjectMemory(mat,len*sizeof(int)); 1577416022c9SBarry Smith PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 1578416022c9SBarry Smith } else a->garray = 0; 1579d6dfbf8fSBarry Smith 1580416022c9SBarry Smith ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 1581416022c9SBarry Smith PLogObjectParent(mat,a->lvec); 1582a56f8943SBarry Smith ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 1583416022c9SBarry Smith PLogObjectParent(mat,a->Mvctx); 1584416022c9SBarry Smith ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 1585416022c9SBarry Smith PLogObjectParent(mat,a->A); 1586416022c9SBarry Smith ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 1587416022c9SBarry Smith PLogObjectParent(mat,a->B); 15885dd7a6c7SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 158925cdf11fSBarry Smith if (flg) { 1590682d7d0cSBarry Smith ierr = MatPrintHelp(mat); CHKERRQ(ierr); 1591682d7d0cSBarry Smith } 15928a729477SBarry Smith *newmat = mat; 15938a729477SBarry Smith return 0; 15948a729477SBarry Smith } 1595416022c9SBarry Smith 159677c4ece6SBarry Smith #include "sys.h" 1597416022c9SBarry Smith 159819bcc07fSBarry Smith int MatLoad_MPIAIJ(Viewer viewer,MatType type,Mat *newmat) 1599416022c9SBarry Smith { 1600d65a2f8fSBarry Smith Mat A; 1601416022c9SBarry Smith int i, nz, ierr, j,rstart, rend, fd; 1602d65a2f8fSBarry Smith Scalar *vals,*svals; 160319bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 1604416022c9SBarry Smith MPI_Status status; 160517699dbbSLois Curfman McInnes int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 1606d65a2f8fSBarry Smith int *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols; 160719bcc07fSBarry Smith int tag = ((PetscObject)viewer)->tag; 1608416022c9SBarry Smith 160917699dbbSLois Curfman McInnes MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 161017699dbbSLois Curfman McInnes if (!rank) { 161190ace30eSBarry Smith ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 161277c4ece6SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,BINARY_INT); CHKERRQ(ierr); 1613c456f294SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIAIJ:not matrix object"); 1614416022c9SBarry Smith } 1615416022c9SBarry Smith 1616416022c9SBarry Smith MPI_Bcast(header+1,3,MPI_INT,0,comm); 1617416022c9SBarry Smith M = header[1]; N = header[2]; 1618416022c9SBarry Smith /* determine ownership of all rows */ 161917699dbbSLois Curfman McInnes m = M/size + ((M % size) > rank); 16200452661fSBarry Smith rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 1621416022c9SBarry Smith MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm); 1622416022c9SBarry Smith rowners[0] = 0; 162317699dbbSLois Curfman McInnes for ( i=2; i<=size; i++ ) { 1624416022c9SBarry Smith rowners[i] += rowners[i-1]; 1625416022c9SBarry Smith } 162617699dbbSLois Curfman McInnes rstart = rowners[rank]; 162717699dbbSLois Curfman McInnes rend = rowners[rank+1]; 1628416022c9SBarry Smith 1629416022c9SBarry Smith /* distribute row lengths to all processors */ 16300452661fSBarry Smith ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens); 1631416022c9SBarry Smith offlens = ourlens + (rend-rstart); 163217699dbbSLois Curfman McInnes if (!rank) { 16330452661fSBarry Smith rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths); 163477c4ece6SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr); 16350452661fSBarry Smith sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 163617699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i]; 1637d65a2f8fSBarry Smith MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm); 16380452661fSBarry Smith PetscFree(sndcounts); 1639416022c9SBarry Smith } 1640416022c9SBarry Smith else { 1641416022c9SBarry Smith MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm); 1642416022c9SBarry Smith } 1643416022c9SBarry Smith 164417699dbbSLois Curfman McInnes if (!rank) { 1645416022c9SBarry Smith /* calculate the number of nonzeros on each processor */ 16460452661fSBarry Smith procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 1647cddf8d76SBarry Smith PetscMemzero(procsnz,size*sizeof(int)); 164817699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 1649416022c9SBarry Smith for ( j=rowners[i]; j< rowners[i+1]; j++ ) { 1650416022c9SBarry Smith procsnz[i] += rowlengths[j]; 1651416022c9SBarry Smith } 1652416022c9SBarry Smith } 16530452661fSBarry Smith PetscFree(rowlengths); 1654416022c9SBarry Smith 1655416022c9SBarry Smith /* determine max buffer needed and allocate it */ 1656416022c9SBarry Smith maxnz = 0; 165717699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 16580452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 1659416022c9SBarry Smith } 16600452661fSBarry Smith cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 1661416022c9SBarry Smith 1662416022c9SBarry Smith /* read in my part of the matrix column indices */ 1663416022c9SBarry Smith nz = procsnz[0]; 16640452661fSBarry Smith mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 166577c4ece6SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,BINARY_INT); CHKERRQ(ierr); 1666d65a2f8fSBarry Smith 1667d65a2f8fSBarry Smith /* read in every one elses and ship off */ 166817699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1669d65a2f8fSBarry Smith nz = procsnz[i]; 167077c4ece6SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr); 1671d65a2f8fSBarry Smith MPI_Send(cols,nz,MPI_INT,i,tag,comm); 1672d65a2f8fSBarry Smith } 16730452661fSBarry Smith PetscFree(cols); 1674416022c9SBarry Smith } 1675416022c9SBarry Smith else { 1676416022c9SBarry Smith /* determine buffer space needed for message */ 1677416022c9SBarry Smith nz = 0; 1678416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1679416022c9SBarry Smith nz += ourlens[i]; 1680416022c9SBarry Smith } 16810452661fSBarry Smith mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 1682416022c9SBarry Smith 1683416022c9SBarry Smith /* receive message of column indices*/ 1684d65a2f8fSBarry Smith MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 1685416022c9SBarry Smith MPI_Get_count(&status,MPI_INT,&maxnz); 1686c456f294SBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJ:something is wrong with file"); 1687416022c9SBarry Smith } 1688416022c9SBarry Smith 1689416022c9SBarry Smith /* loop over local rows, determining number of off diagonal entries */ 1690cddf8d76SBarry Smith PetscMemzero(offlens,m*sizeof(int)); 1691416022c9SBarry Smith jj = 0; 1692416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1693416022c9SBarry Smith for ( j=0; j<ourlens[i]; j++ ) { 1694d65a2f8fSBarry Smith if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 1695416022c9SBarry Smith jj++; 1696416022c9SBarry Smith } 1697416022c9SBarry Smith } 1698d65a2f8fSBarry Smith 1699d65a2f8fSBarry Smith /* create our matrix */ 1700416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1701416022c9SBarry Smith ourlens[i] -= offlens[i]; 1702416022c9SBarry Smith } 1703d65a2f8fSBarry Smith ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1704d65a2f8fSBarry Smith A = *newmat; 1705d65a2f8fSBarry Smith MatSetOption(A,COLUMNS_SORTED); 1706d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1707d65a2f8fSBarry Smith ourlens[i] += offlens[i]; 1708d65a2f8fSBarry Smith } 1709416022c9SBarry Smith 171017699dbbSLois Curfman McInnes if (!rank) { 17110452661fSBarry Smith vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals); 1712416022c9SBarry Smith 1713416022c9SBarry Smith /* read in my part of the matrix numerical values */ 1714416022c9SBarry Smith nz = procsnz[0]; 171577c4ece6SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 1716d65a2f8fSBarry Smith 1717d65a2f8fSBarry Smith /* insert into matrix */ 1718d65a2f8fSBarry Smith jj = rstart; 1719d65a2f8fSBarry Smith smycols = mycols; 1720d65a2f8fSBarry Smith svals = vals; 1721d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1722d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1723d65a2f8fSBarry Smith smycols += ourlens[i]; 1724d65a2f8fSBarry Smith svals += ourlens[i]; 1725d65a2f8fSBarry Smith jj++; 1726416022c9SBarry Smith } 1727416022c9SBarry Smith 1728d65a2f8fSBarry Smith /* read in other processors and ship out */ 172917699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1730416022c9SBarry Smith nz = procsnz[i]; 173177c4ece6SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 1732d65a2f8fSBarry Smith MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 1733416022c9SBarry Smith } 17340452661fSBarry Smith PetscFree(procsnz); 1735416022c9SBarry Smith } 1736d65a2f8fSBarry Smith else { 1737d65a2f8fSBarry Smith /* receive numeric values */ 17380452661fSBarry Smith vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals); 1739416022c9SBarry Smith 1740d65a2f8fSBarry Smith /* receive message of values*/ 1741d65a2f8fSBarry Smith MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 1742d65a2f8fSBarry Smith MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 1743c456f294SBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJ:something is wrong with file"); 1744d65a2f8fSBarry Smith 1745d65a2f8fSBarry Smith /* insert into matrix */ 1746d65a2f8fSBarry Smith jj = rstart; 1747d65a2f8fSBarry Smith smycols = mycols; 1748d65a2f8fSBarry Smith svals = vals; 1749d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1750d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1751d65a2f8fSBarry Smith smycols += ourlens[i]; 1752d65a2f8fSBarry Smith svals += ourlens[i]; 1753d65a2f8fSBarry Smith jj++; 1754d65a2f8fSBarry Smith } 1755d65a2f8fSBarry Smith } 17560452661fSBarry Smith PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners); 1757d65a2f8fSBarry Smith 1758d65a2f8fSBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1759d65a2f8fSBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1760416022c9SBarry Smith return 0; 1761416022c9SBarry Smith } 1762