173f4d377SMatthew Knepley /*$Id: mpiaij.c,v 1.344 2001/08/10 03:30:48 bsmith Exp $*/ 28a729477SBarry Smith 370f55243SBarry Smith #include "src/mat/impls/aij/mpi/mpiaij.h" 4f5eb4b81SSatish Balay #include "src/vec/vecimpl.h" 5d9942c19SSatish Balay #include "src/inline/spops.h" 68a729477SBarry Smith 7ca44d042SBarry Smith EXTERN int MatSetUpMultiply_MPIAIJ(Mat); 8ca44d042SBarry Smith EXTERN int DisAssemble_MPIAIJ(Mat); 987828ca2SBarry Smith EXTERN int MatSetValues_SeqAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode); 1087828ca2SBarry Smith EXTERN int MatGetRow_SeqAIJ(Mat,int,int*,int**,PetscScalar**); 1187828ca2SBarry Smith EXTERN int MatRestoreRow_SeqAIJ(Mat,int,int*,int**,PetscScalar**); 12ca44d042SBarry Smith EXTERN int MatPrintHelp_SeqAIJ(Mat); 13bc5ccf88SSatish Balay 140f5bd95cSBarry Smith /* 150f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 169e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 170f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 180f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 190f5bd95cSBarry Smith has an order N integer array but is fast to acess. 209e25ed09SBarry Smith */ 214a2ae208SSatish Balay #undef __FUNCT__ 224a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIAIJ_Private" 230a198c4cSBarry Smith int CreateColmap_MPIAIJ_Private(Mat mat) 249e25ed09SBarry Smith { 2544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data; 26273d9f13SBarry Smith int n = aij->B->n,i,ierr; 27dbb450caSBarry Smith 283a40ed3dSBarry Smith PetscFunctionBegin; 29aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 30273d9f13SBarry Smith ierr = PetscTableCreate(n,&aij->colmap);CHKERRQ(ierr); 31b1fc9764SSatish Balay for (i=0; i<n; i++){ 320f5bd95cSBarry Smith ierr = PetscTableAdd(aij->colmap,aij->garray[i]+1,i+1);CHKERRQ(ierr); 33b1fc9764SSatish Balay } 34b1fc9764SSatish Balay #else 35b0a32e0cSBarry Smith ierr = PetscMalloc((mat->N+1)*sizeof(int),&aij->colmap);CHKERRQ(ierr); 36b0a32e0cSBarry Smith PetscLogObjectMemory(mat,mat->N*sizeof(int)); 37273d9f13SBarry Smith ierr = PetscMemzero(aij->colmap,mat->N*sizeof(int));CHKERRQ(ierr); 38905e6a2fSBarry Smith for (i=0; i<n; i++) aij->colmap[aij->garray[i]] = i+1; 39b1fc9764SSatish Balay #endif 403a40ed3dSBarry Smith PetscFunctionReturn(0); 419e25ed09SBarry Smith } 429e25ed09SBarry Smith 430520107fSSatish Balay #define CHUNKSIZE 15 4430770e4dSSatish Balay #define MatSetValues_SeqAIJ_A_Private(row,col,value,addv) \ 450520107fSSatish Balay { \ 460520107fSSatish Balay \ 470520107fSSatish Balay rp = aj + ai[row] + shift; ap = aa + ai[row] + shift; \ 4830770e4dSSatish Balay rmax = aimax[row]; nrow = ailen[row]; \ 49f5e9677aSSatish Balay col1 = col - shift; \ 50f5e9677aSSatish Balay \ 51ba4e3ef2SSatish Balay low = 0; high = nrow; \ 52ba4e3ef2SSatish Balay while (high-low > 5) { \ 53ba4e3ef2SSatish Balay t = (low+high)/2; \ 54ba4e3ef2SSatish Balay if (rp[t] > col) high = t; \ 55ba4e3ef2SSatish Balay else low = t; \ 56ba4e3ef2SSatish Balay } \ 572335bdd2SSatish Balay for (_i=low; _i<high; _i++) { \ 58f5e9677aSSatish Balay if (rp[_i] > col1) break; \ 59f5e9677aSSatish Balay if (rp[_i] == col1) { \ 600520107fSSatish Balay if (addv == ADD_VALUES) ap[_i] += value; \ 610520107fSSatish Balay else ap[_i] = value; \ 6230770e4dSSatish Balay goto a_noinsert; \ 630520107fSSatish Balay } \ 640520107fSSatish Balay } \ 6589280ab3SLois Curfman McInnes if (nonew == 1) goto a_noinsert; \ 6629bbc08cSBarry Smith else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 670520107fSSatish Balay if (nrow >= rmax) { \ 680520107fSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 69273d9f13SBarry Smith int new_nz = ai[am] + CHUNKSIZE,len,*new_i,*new_j; \ 7087828ca2SBarry Smith PetscScalar *new_a; \ 710520107fSSatish Balay \ 7229bbc08cSBarry Smith if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 7389280ab3SLois Curfman McInnes \ 740520107fSSatish Balay /* malloc new storage space */ \ 7587828ca2SBarry Smith len = new_nz*(sizeof(int)+sizeof(PetscScalar))+(am+1)*sizeof(int); \ 76b0a32e0cSBarry Smith ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 770520107fSSatish Balay new_j = (int*)(new_a + new_nz); \ 780520107fSSatish Balay new_i = new_j + new_nz; \ 790520107fSSatish Balay \ 800520107fSSatish Balay /* copy over old data into new slots */ \ 810520107fSSatish Balay for (ii=0; ii<row+1; ii++) {new_i[ii] = ai[ii];} \ 82273d9f13SBarry Smith for (ii=row+1; ii<am+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 83549d3d68SSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[row]+nrow+shift)*sizeof(int));CHKERRQ(ierr); \ 840520107fSSatish Balay len = (new_nz - CHUNKSIZE - ai[row] - nrow - shift); \ 85549d3d68SSatish Balay ierr = PetscMemcpy(new_j+ai[row]+shift+nrow+CHUNKSIZE,aj+ai[row]+shift+nrow, \ 86549d3d68SSatish Balay len*sizeof(int));CHKERRQ(ierr); \ 8787828ca2SBarry Smith ierr = PetscMemcpy(new_a,aa,(ai[row]+nrow+shift)*sizeof(PetscScalar));CHKERRQ(ierr); \ 88549d3d68SSatish Balay ierr = PetscMemcpy(new_a+ai[row]+shift+nrow+CHUNKSIZE,aa+ai[row]+shift+nrow, \ 8987828ca2SBarry Smith len*sizeof(PetscScalar));CHKERRQ(ierr); \ 900520107fSSatish Balay /* free up old matrix storage */ \ 91f5e9677aSSatish Balay \ 92606d414cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 93606d414cSSatish Balay if (!a->singlemalloc) { \ 94606d414cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 95606d414cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr); \ 96606d414cSSatish Balay } \ 970520107fSSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 987c922b88SBarry Smith a->singlemalloc = PETSC_TRUE; \ 990520107fSSatish Balay \ 1000520107fSSatish Balay rp = aj + ai[row] + shift; ap = aa + ai[row] + shift; \ 10130770e4dSSatish Balay rmax = aimax[row] = aimax[row] + CHUNKSIZE; \ 10287828ca2SBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + sizeof(PetscScalar))); \ 1030520107fSSatish Balay a->maxnz += CHUNKSIZE; \ 1040520107fSSatish Balay a->reallocs++; \ 1050520107fSSatish Balay } \ 1060520107fSSatish Balay N = nrow++ - 1; a->nz++; \ 1070520107fSSatish Balay /* shift up all the later entries in this row */ \ 1080520107fSSatish Balay for (ii=N; ii>=_i; ii--) { \ 1090520107fSSatish Balay rp[ii+1] = rp[ii]; \ 1100520107fSSatish Balay ap[ii+1] = ap[ii]; \ 1110520107fSSatish Balay } \ 112f5e9677aSSatish Balay rp[_i] = col1; \ 1130520107fSSatish Balay ap[_i] = value; \ 11430770e4dSSatish Balay a_noinsert: ; \ 1150520107fSSatish Balay ailen[row] = nrow; \ 1160520107fSSatish Balay } 1170a198c4cSBarry Smith 11830770e4dSSatish Balay #define MatSetValues_SeqAIJ_B_Private(row,col,value,addv) \ 11930770e4dSSatish Balay { \ 12030770e4dSSatish Balay \ 12130770e4dSSatish Balay rp = bj + bi[row] + shift; ap = ba + bi[row] + shift; \ 12230770e4dSSatish Balay rmax = bimax[row]; nrow = bilen[row]; \ 12330770e4dSSatish Balay col1 = col - shift; \ 12430770e4dSSatish Balay \ 125ba4e3ef2SSatish Balay low = 0; high = nrow; \ 126ba4e3ef2SSatish Balay while (high-low > 5) { \ 127ba4e3ef2SSatish Balay t = (low+high)/2; \ 128ba4e3ef2SSatish Balay if (rp[t] > col) high = t; \ 129ba4e3ef2SSatish Balay else low = t; \ 130ba4e3ef2SSatish Balay } \ 1312335bdd2SSatish Balay for (_i=low; _i<high; _i++) { \ 13230770e4dSSatish Balay if (rp[_i] > col1) break; \ 13330770e4dSSatish Balay if (rp[_i] == col1) { \ 13430770e4dSSatish Balay if (addv == ADD_VALUES) ap[_i] += value; \ 13530770e4dSSatish Balay else ap[_i] = value; \ 13630770e4dSSatish Balay goto b_noinsert; \ 13730770e4dSSatish Balay } \ 13830770e4dSSatish Balay } \ 13989280ab3SLois Curfman McInnes if (nonew == 1) goto b_noinsert; \ 14029bbc08cSBarry Smith else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 14130770e4dSSatish Balay if (nrow >= rmax) { \ 14230770e4dSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 143273d9f13SBarry Smith int new_nz = bi[bm] + CHUNKSIZE,len,*new_i,*new_j; \ 14487828ca2SBarry Smith PetscScalar *new_a; \ 14530770e4dSSatish Balay \ 14629bbc08cSBarry Smith if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 14789280ab3SLois Curfman McInnes \ 14830770e4dSSatish Balay /* malloc new storage space */ \ 14987828ca2SBarry Smith len = new_nz*(sizeof(int)+sizeof(PetscScalar))+(bm+1)*sizeof(int); \ 150b0a32e0cSBarry Smith ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 15130770e4dSSatish Balay new_j = (int*)(new_a + new_nz); \ 15230770e4dSSatish Balay new_i = new_j + new_nz; \ 15330770e4dSSatish Balay \ 15430770e4dSSatish Balay /* copy over old data into new slots */ \ 15530770e4dSSatish Balay for (ii=0; ii<row+1; ii++) {new_i[ii] = bi[ii];} \ 156273d9f13SBarry Smith for (ii=row+1; ii<bm+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 157549d3d68SSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[row]+nrow+shift)*sizeof(int));CHKERRQ(ierr); \ 15830770e4dSSatish Balay len = (new_nz - CHUNKSIZE - bi[row] - nrow - shift); \ 159549d3d68SSatish Balay ierr = PetscMemcpy(new_j+bi[row]+shift+nrow+CHUNKSIZE,bj+bi[row]+shift+nrow, \ 160549d3d68SSatish Balay len*sizeof(int));CHKERRQ(ierr); \ 16187828ca2SBarry Smith ierr = PetscMemcpy(new_a,ba,(bi[row]+nrow+shift)*sizeof(PetscScalar));CHKERRQ(ierr); \ 162549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bi[row]+shift+nrow+CHUNKSIZE,ba+bi[row]+shift+nrow, \ 16387828ca2SBarry Smith len*sizeof(PetscScalar));CHKERRQ(ierr); \ 16430770e4dSSatish Balay /* free up old matrix storage */ \ 16530770e4dSSatish Balay \ 166606d414cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 167606d414cSSatish Balay if (!b->singlemalloc) { \ 168606d414cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 169606d414cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 170606d414cSSatish Balay } \ 17174c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 1727c922b88SBarry Smith b->singlemalloc = PETSC_TRUE; \ 17330770e4dSSatish Balay \ 17430770e4dSSatish Balay rp = bj + bi[row] + shift; ap = ba + bi[row] + shift; \ 17530770e4dSSatish Balay rmax = bimax[row] = bimax[row] + CHUNKSIZE; \ 17687828ca2SBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + sizeof(PetscScalar))); \ 17774c639caSSatish Balay b->maxnz += CHUNKSIZE; \ 17874c639caSSatish Balay b->reallocs++; \ 17930770e4dSSatish Balay } \ 18074c639caSSatish Balay N = nrow++ - 1; b->nz++; \ 18130770e4dSSatish Balay /* shift up all the later entries in this row */ \ 18230770e4dSSatish Balay for (ii=N; ii>=_i; ii--) { \ 18330770e4dSSatish Balay rp[ii+1] = rp[ii]; \ 18430770e4dSSatish Balay ap[ii+1] = ap[ii]; \ 18530770e4dSSatish Balay } \ 18630770e4dSSatish Balay rp[_i] = col1; \ 18730770e4dSSatish Balay ap[_i] = value; \ 18830770e4dSSatish Balay b_noinsert: ; \ 18930770e4dSSatish Balay bilen[row] = nrow; \ 19030770e4dSSatish Balay } 19130770e4dSSatish Balay 1924a2ae208SSatish Balay #undef __FUNCT__ 1934a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIAIJ" 19487828ca2SBarry Smith int MatSetValues_MPIAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 1958a729477SBarry Smith { 19644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data; 19787828ca2SBarry Smith PetscScalar value; 1981eb62cbbSBarry Smith int ierr,i,j,rstart = aij->rstart,rend = aij->rend; 1991eb62cbbSBarry Smith int cstart = aij->cstart,cend = aij->cend,row,col; 200273d9f13SBarry Smith PetscTruth roworiented = aij->roworiented; 2018a729477SBarry Smith 2020520107fSSatish Balay /* Some Variables required in the macro */ 2034ee7247eSSatish Balay Mat A = aij->A; 2044ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 20530770e4dSSatish Balay int *aimax = a->imax,*ai = a->i,*ailen = a->ilen,*aj = a->j; 20687828ca2SBarry Smith PetscScalar *aa = a->a; 207329f5518SBarry Smith PetscTruth ignorezeroentries = (((a->ignorezeroentries)&&(addv==ADD_VALUES))?PETSC_TRUE:PETSC_FALSE); 20830770e4dSSatish Balay Mat B = aij->B; 20930770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ*)B->data; 210273d9f13SBarry Smith int *bimax = b->imax,*bi = b->i,*bilen = b->ilen,*bj = b->j,bm = aij->B->m,am = aij->A->m; 21187828ca2SBarry Smith PetscScalar *ba = b->a; 21230770e4dSSatish Balay 213ba4e3ef2SSatish Balay int *rp,ii,nrow,_i,rmax,N,col1,low,high,t; 21430770e4dSSatish Balay int nonew = a->nonew,shift = a->indexshift; 21587828ca2SBarry Smith PetscScalar *ap; 2164ee7247eSSatish Balay 2173a40ed3dSBarry Smith PetscFunctionBegin; 2188a729477SBarry Smith for (i=0; i<m; i++) { 2195ef9f2a5SBarry Smith if (im[i] < 0) continue; 220aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 221273d9f13SBarry Smith if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 2220a198c4cSBarry Smith #endif 2234b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 2244b0e389bSBarry Smith row = im[i] - rstart; 2251eb62cbbSBarry Smith for (j=0; j<n; j++) { 2264b0e389bSBarry Smith if (in[j] >= cstart && in[j] < cend){ 2274b0e389bSBarry Smith col = in[j] - cstart; 2284b0e389bSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 229329f5518SBarry Smith if (ignorezeroentries && value == 0.0) continue; 23030770e4dSSatish Balay MatSetValues_SeqAIJ_A_Private(row,col,value,addv); 2310520107fSSatish Balay /* ierr = MatSetValues_SeqAIJ(aij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 232273d9f13SBarry Smith } else if (in[j] < 0) continue; 233aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 234273d9f13SBarry Smith else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");} 2350a198c4cSBarry Smith #endif 2361eb62cbbSBarry Smith else { 237227d817aSBarry Smith if (mat->was_assembled) { 238905e6a2fSBarry Smith if (!aij->colmap) { 239905e6a2fSBarry Smith ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr); 240905e6a2fSBarry Smith } 241aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2420f5bd95cSBarry Smith ierr = PetscTableFind(aij->colmap,in[j]+1,&col);CHKERRQ(ierr); 243fa46199cSSatish Balay col--; 244b1fc9764SSatish Balay #else 245905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 246b1fc9764SSatish Balay #endif 247ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 2482493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat);CHKERRQ(ierr); 2494b0e389bSBarry Smith col = in[j]; 2509bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 251f9508a3cSSatish Balay B = aij->B; 252f9508a3cSSatish Balay b = (Mat_SeqAIJ*)B->data; 253f9508a3cSSatish Balay bimax = b->imax; bi = b->i; bilen = b->ilen; bj = b->j; 254f9508a3cSSatish Balay ba = b->a; 255d6dfbf8fSBarry Smith } 256c48de900SBarry Smith } else col = in[j]; 2574b0e389bSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 258329f5518SBarry Smith if (ignorezeroentries && value == 0.0) continue; 25930770e4dSSatish Balay MatSetValues_SeqAIJ_B_Private(row,col,value,addv); 26030770e4dSSatish Balay /* ierr = MatSetValues_SeqAIJ(aij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 2611eb62cbbSBarry Smith } 2621eb62cbbSBarry Smith } 2635ef9f2a5SBarry Smith } else { 26490f02eecSBarry Smith if (!aij->donotstash) { 265d36fbae8SSatish Balay if (roworiented) { 266329f5518SBarry Smith if (ignorezeroentries && v[i*n] == 0.0) continue; 2678798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 268d36fbae8SSatish Balay } else { 269329f5518SBarry Smith if (ignorezeroentries && v[i] == 0.0) continue; 2708798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 2714b0e389bSBarry Smith } 2721eb62cbbSBarry Smith } 2738a729477SBarry Smith } 27490f02eecSBarry Smith } 2753a40ed3dSBarry Smith PetscFunctionReturn(0); 2768a729477SBarry Smith } 2778a729477SBarry Smith 2784a2ae208SSatish Balay #undef __FUNCT__ 2794a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIAIJ" 28087828ca2SBarry Smith int MatGetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v) 281b49de8d1SLois Curfman McInnes { 282b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data; 283b49de8d1SLois Curfman McInnes int ierr,i,j,rstart = aij->rstart,rend = aij->rend; 284b49de8d1SLois Curfman McInnes int cstart = aij->cstart,cend = aij->cend,row,col; 285b49de8d1SLois Curfman McInnes 2863a40ed3dSBarry Smith PetscFunctionBegin; 287b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 28829bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 289273d9f13SBarry Smith if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 290b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 291b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 292b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 29329bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 294273d9f13SBarry Smith if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 295b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend){ 296b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 297b49de8d1SLois Curfman McInnes ierr = MatGetValues(aij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 298fa852ad4SSatish Balay } else { 299905e6a2fSBarry Smith if (!aij->colmap) { 300905e6a2fSBarry Smith ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr); 301905e6a2fSBarry Smith } 302aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3030f5bd95cSBarry Smith ierr = PetscTableFind(aij->colmap,idxn[j]+1,&col);CHKERRQ(ierr); 304fa46199cSSatish Balay col --; 305b1fc9764SSatish Balay #else 306905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 307b1fc9764SSatish Balay #endif 308e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v+i*n+j) = 0.0; 309d9d09a02SSatish Balay else { 310b49de8d1SLois Curfman McInnes ierr = MatGetValues(aij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 311b49de8d1SLois Curfman McInnes } 312b49de8d1SLois Curfman McInnes } 313b49de8d1SLois Curfman McInnes } 314a8c6a408SBarry Smith } else { 31529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 316b49de8d1SLois Curfman McInnes } 317b49de8d1SLois Curfman McInnes } 3183a40ed3dSBarry Smith PetscFunctionReturn(0); 319b49de8d1SLois Curfman McInnes } 320bc5ccf88SSatish Balay 3214a2ae208SSatish Balay #undef __FUNCT__ 3224a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIAIJ" 323bc5ccf88SSatish Balay int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode) 324bc5ccf88SSatish Balay { 325bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data; 326d36fbae8SSatish Balay int ierr,nstash,reallocs; 327bc5ccf88SSatish Balay InsertMode addv; 328bc5ccf88SSatish Balay 329bc5ccf88SSatish Balay PetscFunctionBegin; 330bc5ccf88SSatish Balay if (aij->donotstash) { 331bc5ccf88SSatish Balay PetscFunctionReturn(0); 332bc5ccf88SSatish Balay } 333bc5ccf88SSatish Balay 334bc5ccf88SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 335bc5ccf88SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 336bc5ccf88SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 33729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 338bc5ccf88SSatish Balay } 339bc5ccf88SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 340bc5ccf88SSatish Balay 3418798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,aij->rowners);CHKERRQ(ierr); 3428798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 343b0a32e0cSBarry Smith PetscLogInfo(aij->A,"MatAssemblyBegin_MPIAIJ:Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 344bc5ccf88SSatish Balay PetscFunctionReturn(0); 345bc5ccf88SSatish Balay } 346bc5ccf88SSatish Balay 347bc5ccf88SSatish Balay 3484a2ae208SSatish Balay #undef __FUNCT__ 3494a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIAIJ" 350bc5ccf88SSatish Balay int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode) 351bc5ccf88SSatish Balay { 352bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data; 353a2d1c673SSatish Balay int i,j,rstart,ncols,n,ierr,flg; 354bc5ccf88SSatish Balay int *row,*col,other_disassembled; 35587828ca2SBarry Smith PetscScalar *val; 356bc5ccf88SSatish Balay InsertMode addv = mat->insertmode; 3574032b0d1SHong Zhang #if defined(PETSC_HAVE_SUPERLUDIST) || defined(PETSC_HAVE_SPOOLES) 3589b9367d5SHong Zhang PetscTruth flag; 3599e070d67SMatthew Knepley #endif 360bc5ccf88SSatish Balay 361bc5ccf88SSatish Balay PetscFunctionBegin; 362bc5ccf88SSatish Balay if (!aij->donotstash) { 363a2d1c673SSatish Balay while (1) { 3648798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 365a2d1c673SSatish Balay if (!flg) break; 366a2d1c673SSatish Balay 367bc5ccf88SSatish Balay for (i=0; i<n;) { 368bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 369bc5ccf88SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 370bc5ccf88SSatish Balay if (j < n) ncols = j-i; 371bc5ccf88SSatish Balay else ncols = n-i; 372bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 373bc5ccf88SSatish Balay ierr = MatSetValues_MPIAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 374bc5ccf88SSatish Balay i = j; 375bc5ccf88SSatish Balay } 376bc5ccf88SSatish Balay } 3778798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 378bc5ccf88SSatish Balay } 379bc5ccf88SSatish Balay 380bc5ccf88SSatish Balay ierr = MatAssemblyBegin(aij->A,mode);CHKERRQ(ierr); 381bc5ccf88SSatish Balay ierr = MatAssemblyEnd(aij->A,mode);CHKERRQ(ierr); 382bc5ccf88SSatish Balay 383bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 384bc5ccf88SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 385bc5ccf88SSatish Balay /* 386bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 387bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 388bc5ccf88SSatish Balay */ 389bc5ccf88SSatish Balay if (!((Mat_SeqAIJ*)aij->B->data)->nonew) { 390bc5ccf88SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 391bc5ccf88SSatish Balay if (mat->was_assembled && !other_disassembled) { 392bc5ccf88SSatish Balay ierr = DisAssemble_MPIAIJ(mat);CHKERRQ(ierr); 393bc5ccf88SSatish Balay } 394bc5ccf88SSatish Balay } 395bc5ccf88SSatish Balay 396bc5ccf88SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 397bc5ccf88SSatish Balay ierr = MatSetUpMultiply_MPIAIJ(mat);CHKERRQ(ierr); 398bc5ccf88SSatish Balay } 399bc5ccf88SSatish Balay ierr = MatAssemblyBegin(aij->B,mode);CHKERRQ(ierr); 400bc5ccf88SSatish Balay ierr = MatAssemblyEnd(aij->B,mode);CHKERRQ(ierr); 401bc5ccf88SSatish Balay 402606d414cSSatish Balay if (aij->rowvalues) { 403606d414cSSatish Balay ierr = PetscFree(aij->rowvalues);CHKERRQ(ierr); 404606d414cSSatish Balay aij->rowvalues = 0; 405606d414cSSatish Balay } 4069b9367d5SHong Zhang #if defined(PETSC_HAVE_SUPERLUDIST) 407e82a3eeeSBarry Smith ierr = PetscOptionsHasName(mat->prefix,"-mat_aij_superlu_dist",&flag);CHKERRQ(ierr); 4089b9367d5SHong Zhang if (flag) { ierr = MatUseSuperLU_DIST_MPIAIJ(mat);CHKERRQ(ierr); } 4099b9367d5SHong Zhang #endif 4104032b0d1SHong Zhang 4114032b0d1SHong Zhang #if defined(PETSC_HAVE_SPOOLES) 412e82a3eeeSBarry Smith ierr = PetscOptionsHasName(mat->prefix,"-mat_aij_spooles",&flag);CHKERRQ(ierr); 4134032b0d1SHong Zhang if (flag) { ierr = MatUseSpooles_MPIAIJ(mat);CHKERRQ(ierr); } 4144032b0d1SHong Zhang #endif 415bc5ccf88SSatish Balay PetscFunctionReturn(0); 416bc5ccf88SSatish Balay } 417bc5ccf88SSatish Balay 4184a2ae208SSatish Balay #undef __FUNCT__ 4194a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIAIJ" 4208f6be9afSLois Curfman McInnes int MatZeroEntries_MPIAIJ(Mat A) 4211eb62cbbSBarry Smith { 42244a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ*)A->data; 423dbd7a890SLois Curfman McInnes int ierr; 4243a40ed3dSBarry Smith 4253a40ed3dSBarry Smith PetscFunctionBegin; 42678b31e54SBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 42778b31e54SBarry Smith ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 4283a40ed3dSBarry Smith PetscFunctionReturn(0); 4291eb62cbbSBarry Smith } 4301eb62cbbSBarry Smith 4314a2ae208SSatish Balay #undef __FUNCT__ 4324a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIAIJ" 43387828ca2SBarry Smith int MatZeroRows_MPIAIJ(Mat A,IS is,PetscScalar *diag) 4341eb62cbbSBarry Smith { 43544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ*)A->data; 43617699dbbSLois Curfman McInnes int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 43735d8aa7fSBarry Smith int *procs,*nprocs,j,idx,nsends,*work,row; 43817699dbbSLois Curfman McInnes int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 4395392566eSBarry Smith int *rvalues,tag = A->tag,count,base,slen,n,*source; 4406a5c57faSSatish Balay int *lens,imdex,*lrows,*values,rstart=l->rstart; 441d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 4421eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 4431eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 4441eb62cbbSBarry Smith IS istmp; 44535d8aa7fSBarry Smith PetscTruth found; 4461eb62cbbSBarry Smith 4473a40ed3dSBarry Smith PetscFunctionBegin; 448e03a110bSBarry Smith ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr); 44978b31e54SBarry Smith ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 4501eb62cbbSBarry Smith 4511eb62cbbSBarry Smith /* first count number of contributors to each processor */ 452b0a32e0cSBarry Smith ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr); 453549d3d68SSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 454549d3d68SSatish Balay procs = nprocs + size; 455b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/ 4561eb62cbbSBarry Smith for (i=0; i<N; i++) { 4571eb62cbbSBarry Smith idx = rows[i]; 45835d8aa7fSBarry Smith found = PETSC_FALSE; 45917699dbbSLois Curfman McInnes for (j=0; j<size; j++) { 4601eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 46135d8aa7fSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break; 4621eb62cbbSBarry Smith } 4631eb62cbbSBarry Smith } 46429bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 4651eb62cbbSBarry Smith } 46617699dbbSLois Curfman McInnes nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 4671eb62cbbSBarry Smith 4681eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 469b0a32e0cSBarry Smith ierr = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr); 4706831982aSBarry Smith ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 4716831982aSBarry Smith nrecvs = work[size+rank]; 47217699dbbSLois Curfman McInnes nmax = work[rank]; 473606d414cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 4741eb62cbbSBarry Smith 4751eb62cbbSBarry Smith /* post receives: */ 476b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr); 477b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 4781eb62cbbSBarry Smith for (i=0; i<nrecvs; i++) { 479ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 4801eb62cbbSBarry Smith } 4811eb62cbbSBarry Smith 4821eb62cbbSBarry Smith /* do sends: 4831eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 4841eb62cbbSBarry Smith the ith processor 4851eb62cbbSBarry Smith */ 486b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr); 487b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 488b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 4891eb62cbbSBarry Smith starts[0] = 0; 49017699dbbSLois Curfman McInnes for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 4911eb62cbbSBarry Smith for (i=0; i<N; i++) { 4921eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 4931eb62cbbSBarry Smith } 4946831982aSBarry Smith ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 4951eb62cbbSBarry Smith 4961eb62cbbSBarry Smith starts[0] = 0; 49717699dbbSLois Curfman McInnes for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 4981eb62cbbSBarry Smith count = 0; 49917699dbbSLois Curfman McInnes for (i=0; i<size; i++) { 5001eb62cbbSBarry Smith if (procs[i]) { 501ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 5021eb62cbbSBarry Smith } 5031eb62cbbSBarry Smith } 504606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 5051eb62cbbSBarry Smith 50617699dbbSLois Curfman McInnes base = owners[rank]; 5071eb62cbbSBarry Smith 5081eb62cbbSBarry Smith /* wait on receives */ 509b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr); 5101eb62cbbSBarry Smith source = lens + nrecvs; 5111eb62cbbSBarry Smith count = nrecvs; slen = 0; 5121eb62cbbSBarry Smith while (count) { 513ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 5141eb62cbbSBarry Smith /* unpack receives into our local space */ 515ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 516d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 517d6dfbf8fSBarry Smith lens[imdex] = n; 5181eb62cbbSBarry Smith slen += n; 5191eb62cbbSBarry Smith count--; 5201eb62cbbSBarry Smith } 521606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 5221eb62cbbSBarry Smith 5231eb62cbbSBarry Smith /* move the data into the send scatter */ 524b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr); 5251eb62cbbSBarry Smith count = 0; 5261eb62cbbSBarry Smith for (i=0; i<nrecvs; i++) { 5271eb62cbbSBarry Smith values = rvalues + i*nmax; 5281eb62cbbSBarry Smith for (j=0; j<lens[i]; j++) { 5291eb62cbbSBarry Smith lrows[count++] = values[j] - base; 5301eb62cbbSBarry Smith } 5311eb62cbbSBarry Smith } 532606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 533606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 534606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 535606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 5361eb62cbbSBarry Smith 5371eb62cbbSBarry Smith /* actually zap the local rows */ 538029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 539b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 5406a5c57faSSatish Balay 5416eb55b6aSBarry Smith /* 5426eb55b6aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 5436eb55b6aSBarry Smith is square and the user wishes to set the diagonal we use seperate 5446eb55b6aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 5456eb55b6aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 5466eb55b6aSBarry Smith 5476eb55b6aSBarry Smith Contributed by: Mathew Knepley 5486eb55b6aSBarry Smith */ 549e2d53e46SBarry Smith /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 550e2d53e46SBarry Smith ierr = MatZeroRows(l->B,istmp,0);CHKERRQ(ierr); 5516eb55b6aSBarry Smith if (diag && (l->A->M == l->A->N)) { 5526eb55b6aSBarry Smith ierr = MatZeroRows(l->A,istmp,diag);CHKERRQ(ierr); 553e2d53e46SBarry Smith } else if (diag) { 554e2d53e46SBarry Smith ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr); 555fa46199cSSatish Balay if (((Mat_SeqAIJ*)l->A->data)->nonew) { 55629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options\n\ 557fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 5586525c446SSatish Balay } 559e2d53e46SBarry Smith for (i = 0; i < slen; i++) { 560e2d53e46SBarry Smith row = lrows[i] + rstart; 561e2d53e46SBarry Smith ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 562e2d53e46SBarry Smith } 563e2d53e46SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 564e2d53e46SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 5656eb55b6aSBarry Smith } else { 5666a5c57faSSatish Balay ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr); 5676eb55b6aSBarry Smith } 56878b31e54SBarry Smith ierr = ISDestroy(istmp);CHKERRQ(ierr); 569606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 57072dacd9aSBarry Smith 5711eb62cbbSBarry Smith /* wait on sends */ 5721eb62cbbSBarry Smith if (nsends) { 573b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 574ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 575606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 5761eb62cbbSBarry Smith } 577606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 578606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 5791eb62cbbSBarry Smith 5803a40ed3dSBarry Smith PetscFunctionReturn(0); 5811eb62cbbSBarry Smith } 5821eb62cbbSBarry Smith 5834a2ae208SSatish Balay #undef __FUNCT__ 5844a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIAIJ" 5858f6be9afSLois Curfman McInnes int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy) 5861eb62cbbSBarry Smith { 587416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 588fbd6ef76SBarry Smith int ierr,nt; 589416022c9SBarry Smith 5903a40ed3dSBarry Smith PetscFunctionBegin; 591a2ce50c7SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 592273d9f13SBarry Smith if (nt != A->n) { 593273d9f13SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%d) and xx (%d)",A->n,nt); 594fbd6ef76SBarry Smith } 59543a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 596f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 59743a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 598f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 5993a40ed3dSBarry Smith PetscFunctionReturn(0); 6001eb62cbbSBarry Smith } 6011eb62cbbSBarry Smith 6024a2ae208SSatish Balay #undef __FUNCT__ 6034a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIAIJ" 6048f6be9afSLois Curfman McInnes int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 605da3a660dSBarry Smith { 606416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 607da3a660dSBarry Smith int ierr; 6083a40ed3dSBarry Smith 6093a40ed3dSBarry Smith PetscFunctionBegin; 61043a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 611f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 61243a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 613f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 6143a40ed3dSBarry Smith PetscFunctionReturn(0); 615da3a660dSBarry Smith } 616da3a660dSBarry Smith 6174a2ae208SSatish Balay #undef __FUNCT__ 6184a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIAIJ" 6197c922b88SBarry Smith int MatMultTranspose_MPIAIJ(Mat A,Vec xx,Vec yy) 620da3a660dSBarry Smith { 621416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 622da3a660dSBarry Smith int ierr; 623da3a660dSBarry Smith 6243a40ed3dSBarry Smith PetscFunctionBegin; 625da3a660dSBarry Smith /* do nondiagonal part */ 6267c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 627da3a660dSBarry Smith /* send it on its way */ 628537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 629da3a660dSBarry Smith /* do local part */ 6307c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 631da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 632da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 633da3a660dSBarry Smith /* but is not perhaps always true. */ 634537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 6353a40ed3dSBarry Smith PetscFunctionReturn(0); 636da3a660dSBarry Smith } 637da3a660dSBarry Smith 6384a2ae208SSatish Balay #undef __FUNCT__ 6394a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIAIJ" 6407c922b88SBarry Smith int MatMultTransposeAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 641da3a660dSBarry Smith { 642416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 643da3a660dSBarry Smith int ierr; 644da3a660dSBarry Smith 6453a40ed3dSBarry Smith PetscFunctionBegin; 646da3a660dSBarry Smith /* do nondiagonal part */ 6477c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 648da3a660dSBarry Smith /* send it on its way */ 649537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 650da3a660dSBarry Smith /* do local part */ 6517c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 652da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 653da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 654da3a660dSBarry Smith /* but is not perhaps always true. */ 6550a198c4cSBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 6563a40ed3dSBarry Smith PetscFunctionReturn(0); 657da3a660dSBarry Smith } 658da3a660dSBarry Smith 6591eb62cbbSBarry Smith /* 6601eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 6611eb62cbbSBarry Smith diagonal block 6621eb62cbbSBarry Smith */ 6634a2ae208SSatish Balay #undef __FUNCT__ 6644a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIAIJ" 6658f6be9afSLois Curfman McInnes int MatGetDiagonal_MPIAIJ(Mat A,Vec v) 6661eb62cbbSBarry Smith { 6673a40ed3dSBarry Smith int ierr; 668416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 6693a40ed3dSBarry Smith 6703a40ed3dSBarry Smith PetscFunctionBegin; 671273d9f13SBarry Smith if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 6725baf8537SBarry Smith if (a->rstart != a->cstart || a->rend != a->cend) { 67329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"row partition must equal col partition"); 6743a40ed3dSBarry Smith } 6753a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 6763a40ed3dSBarry Smith PetscFunctionReturn(0); 6771eb62cbbSBarry Smith } 6781eb62cbbSBarry Smith 6794a2ae208SSatish Balay #undef __FUNCT__ 6804a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIAIJ" 68187828ca2SBarry Smith int MatScale_MPIAIJ(PetscScalar *aa,Mat A) 682052efed2SBarry Smith { 683052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 684052efed2SBarry Smith int ierr; 6853a40ed3dSBarry Smith 6863a40ed3dSBarry Smith PetscFunctionBegin; 687052efed2SBarry Smith ierr = MatScale(aa,a->A);CHKERRQ(ierr); 688052efed2SBarry Smith ierr = MatScale(aa,a->B);CHKERRQ(ierr); 6893a40ed3dSBarry Smith PetscFunctionReturn(0); 690052efed2SBarry Smith } 691052efed2SBarry Smith 6924a2ae208SSatish Balay #undef __FUNCT__ 6934a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIAIJ" 694e1311b90SBarry Smith int MatDestroy_MPIAIJ(Mat mat) 6951eb62cbbSBarry Smith { 69644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data; 6971eb62cbbSBarry Smith int ierr; 69883e2fdc7SBarry Smith 6993a40ed3dSBarry Smith PetscFunctionBegin; 700aa482453SBarry Smith #if defined(PETSC_USE_LOG) 701b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",mat->M,mat->N); 702a5a9c739SBarry Smith #endif 7038798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 704606d414cSSatish Balay ierr = PetscFree(aij->rowners);CHKERRQ(ierr); 70578b31e54SBarry Smith ierr = MatDestroy(aij->A);CHKERRQ(ierr); 70678b31e54SBarry Smith ierr = MatDestroy(aij->B);CHKERRQ(ierr); 707aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 7080f5bd95cSBarry Smith if (aij->colmap) {ierr = PetscTableDelete(aij->colmap);CHKERRQ(ierr);} 709b1fc9764SSatish Balay #else 710606d414cSSatish Balay if (aij->colmap) {ierr = PetscFree(aij->colmap);CHKERRQ(ierr);} 711b1fc9764SSatish Balay #endif 712606d414cSSatish Balay if (aij->garray) {ierr = PetscFree(aij->garray);CHKERRQ(ierr);} 7137c922b88SBarry Smith if (aij->lvec) {ierr = VecDestroy(aij->lvec);CHKERRQ(ierr);} 7147c922b88SBarry Smith if (aij->Mvctx) {ierr = VecScatterDestroy(aij->Mvctx);CHKERRQ(ierr);} 715606d414cSSatish Balay if (aij->rowvalues) {ierr = PetscFree(aij->rowvalues);CHKERRQ(ierr);} 716606d414cSSatish Balay ierr = PetscFree(aij);CHKERRQ(ierr); 7173a40ed3dSBarry Smith PetscFunctionReturn(0); 7181eb62cbbSBarry Smith } 719ee50ffe9SBarry Smith 7204aedb280SBarry Smith extern int MatMPIAIJFactorInfo_SuperLu(Mat,PetscViewer); 721a072f7f7SHong Zhang extern int MatFactorInfo_Spooles(Mat,PetscViewer); 7224aedb280SBarry Smith 7234a2ae208SSatish Balay #undef __FUNCT__ 7244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIAIJ_ASCIIorDraworSocket" 725b0a32e0cSBarry Smith int MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 726416022c9SBarry Smith { 72744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data; 728dbb450caSBarry Smith Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data; 729fb9695e5SSatish Balay int ierr,shift = C->indexshift,rank = aij->rank,size = aij->size; 730f1af5d2fSBarry Smith PetscTruth isdraw,isascii,flg; 731b0a32e0cSBarry Smith PetscViewer sviewer; 732f3ef73ceSBarry Smith PetscViewerFormat format; 733416022c9SBarry Smith 7343a40ed3dSBarry Smith PetscFunctionBegin; 735fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 736b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 7370f5bd95cSBarry Smith if (isascii) { 738b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 739*456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 7404e220ebcSLois Curfman McInnes MatInfo info; 7411dab6e02SBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 742888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 743b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_aij_no_inode",&flg);CHKERRQ(ierr); 7446831982aSBarry Smith if (flg) { 745b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d mem %d, not using I-node routines\n", 746273d9f13SBarry Smith rank,mat->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory);CHKERRQ(ierr); 7476831982aSBarry Smith } else { 748b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d mem %d, using I-node routines\n", 749273d9f13SBarry Smith rank,mat->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory);CHKERRQ(ierr); 7506831982aSBarry Smith } 751888f2ed8SSatish Balay ierr = MatGetInfo(aij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 752b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used);CHKERRQ(ierr); 753888f2ed8SSatish Balay ierr = MatGetInfo(aij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 754b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used);CHKERRQ(ierr); 755b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 756a40aa06bSLois Curfman McInnes ierr = VecScatterView(aij->Mvctx,viewer);CHKERRQ(ierr); 7573a40ed3dSBarry Smith PetscFunctionReturn(0); 758fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 7593a40ed3dSBarry Smith PetscFunctionReturn(0); 7604aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 7614aedb280SBarry Smith #if defined(PETSC_HAVE_SUPERLUDIST) && !defined(PETSC_USE_SINGLE) && !defined(PETSC_USE_COMPLEX) 7624aedb280SBarry Smith ierr = MatMPIAIJFactorInfo_SuperLu(mat,viewer);CHKERRQ(ierr); 7634aedb280SBarry Smith #endif 7640473ca23SHong Zhang #if defined(PETSC_HAVE_SPOOLES) && !defined(PETSC_USE_SINGLE) && !defined(PETSC_USE_COMPLEX) 765a072f7f7SHong Zhang ierr = MatFactorInfo_Spooles(mat,viewer);CHKERRQ(ierr); 7660473ca23SHong Zhang #endif 767471340fbSHong Zhang 7684aedb280SBarry Smith PetscFunctionReturn(0); 76908480c60SBarry Smith } 7700f5bd95cSBarry Smith } else if (isdraw) { 771b0a32e0cSBarry Smith PetscDraw draw; 77219bcc07fSBarry Smith PetscTruth isnull; 773b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 774b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 77519bcc07fSBarry Smith } 77619bcc07fSBarry Smith 77717699dbbSLois Curfman McInnes if (size == 1) { 778e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)aij->A,mat->name);CHKERRQ(ierr); 77978b31e54SBarry Smith ierr = MatView(aij->A,viewer);CHKERRQ(ierr); 7803a40ed3dSBarry Smith } else { 78195373324SBarry Smith /* assemble the entire matrix onto first processor. */ 78295373324SBarry Smith Mat A; 783ec8511deSBarry Smith Mat_SeqAIJ *Aloc; 784273d9f13SBarry Smith int M = mat->M,N = mat->N,m,*ai,*aj,row,*cols,i,*ct; 78587828ca2SBarry Smith PetscScalar *a; 7862ee70a88SLois Curfman McInnes 78717699dbbSLois Curfman McInnes if (!rank) { 78855843e3eSBarry Smith ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 7893a40ed3dSBarry Smith } else { 79055843e3eSBarry Smith ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 79195373324SBarry Smith } 792b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 793416022c9SBarry Smith 79495373324SBarry Smith /* copy over the A part */ 795ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*)aij->A->data; 796273d9f13SBarry Smith m = aij->A->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 79795373324SBarry Smith row = aij->rstart; 798dbb450caSBarry Smith for (i=0; i<ai[m]+shift; i++) {aj[i] += aij->cstart + shift;} 79995373324SBarry Smith for (i=0; i<m; i++) { 800416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr); 80195373324SBarry Smith row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 80295373324SBarry Smith } 8032ee70a88SLois Curfman McInnes aj = Aloc->j; 804dbb450caSBarry Smith for (i=0; i<ai[m]+shift; i++) {aj[i] -= aij->cstart + shift;} 80595373324SBarry Smith 80695373324SBarry Smith /* copy over the B part */ 807ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*)aij->B->data; 808273d9f13SBarry Smith m = aij->B->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 80995373324SBarry Smith row = aij->rstart; 810b0a32e0cSBarry Smith ierr = PetscMalloc((ai[m]+1)*sizeof(int),&cols);CHKERRQ(ierr); 811b0a32e0cSBarry Smith ct = cols; 812dbb450caSBarry Smith for (i=0; i<ai[m]+shift; i++) {cols[i] = aij->garray[aj[i]+shift];} 81395373324SBarry Smith for (i=0; i<m; i++) { 814416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr); 81595373324SBarry Smith row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 81695373324SBarry Smith } 817606d414cSSatish Balay ierr = PetscFree(ct);CHKERRQ(ierr); 8186d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8196d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 82055843e3eSBarry Smith /* 82155843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 822b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 82355843e3eSBarry Smith */ 824b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 825e03a110bSBarry Smith if (!rank) { 826e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 8276831982aSBarry Smith ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 82895373324SBarry Smith } 829b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 83078b31e54SBarry Smith ierr = MatDestroy(A);CHKERRQ(ierr); 83195373324SBarry Smith } 8323a40ed3dSBarry Smith PetscFunctionReturn(0); 8331eb62cbbSBarry Smith } 8341eb62cbbSBarry Smith 8354a2ae208SSatish Balay #undef __FUNCT__ 8364a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIAIJ" 837b0a32e0cSBarry Smith int MatView_MPIAIJ(Mat mat,PetscViewer viewer) 838416022c9SBarry Smith { 839416022c9SBarry Smith int ierr; 8406831982aSBarry Smith PetscTruth isascii,isdraw,issocket,isbinary; 841416022c9SBarry Smith 8423a40ed3dSBarry Smith PetscFunctionBegin; 843b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 844fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 845fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 846b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 8470f5bd95cSBarry Smith if (isascii || isdraw || isbinary || issocket) { 8487b2a1423SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 8495cd90555SBarry Smith } else { 85029bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPIAIJ matrices",((PetscObject)viewer)->type_name); 851416022c9SBarry Smith } 8523a40ed3dSBarry Smith PetscFunctionReturn(0); 853416022c9SBarry Smith } 854416022c9SBarry Smith 8551eb62cbbSBarry Smith 856c14dc6b6SHong Zhang 8574a2ae208SSatish Balay #undef __FUNCT__ 8584a2ae208SSatish Balay #define __FUNCT__ "MatRelax_MPIAIJ" 859c14dc6b6SHong Zhang int MatRelax_MPIAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx) 8608a729477SBarry Smith { 86144a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ*)matin->data; 862c14dc6b6SHong Zhang int ierr; 863c14dc6b6SHong Zhang Vec bb1; 864a6c309e7SHong Zhang PetscScalar mone=-1.0; 8658a729477SBarry Smith 8663a40ed3dSBarry Smith PetscFunctionBegin; 86791723122SBarry Smith if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits); 868c14dc6b6SHong Zhang 869c14dc6b6SHong Zhang ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 8702798e883SHong Zhang 871c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 872da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 873bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr); 8742798e883SHong Zhang its--; 875da3a660dSBarry Smith } 8762798e883SHong Zhang 8772798e883SHong Zhang while (its--) { 8783a40ed3dSBarry Smith ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 8793a40ed3dSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 8802798e883SHong Zhang 881c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 882c14dc6b6SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 883c14dc6b6SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 8842798e883SHong Zhang 885c14dc6b6SHong Zhang /* local sweep */ 886bd3bf7d3SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx); 887c14dc6b6SHong Zhang CHKERRQ(ierr); 8882798e883SHong Zhang } 8893a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 890da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 891c14dc6b6SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr); 8922798e883SHong Zhang its--; 893da3a660dSBarry Smith } 8942798e883SHong Zhang while (its--) { 8953a40ed3dSBarry Smith ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 8963a40ed3dSBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 8972798e883SHong Zhang 898c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 899c14dc6b6SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 900c14dc6b6SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 901c14dc6b6SHong Zhang 902c14dc6b6SHong Zhang /* local sweep */ 903a6c309e7SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,PETSC_NULL,xx); 904c14dc6b6SHong Zhang CHKERRQ(ierr); 9052798e883SHong Zhang } 9063a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 907da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 908c14dc6b6SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr); 9092798e883SHong Zhang its--; 910da3a660dSBarry Smith } 9112798e883SHong Zhang while (its--) { 9122e8a6d31SBarry Smith ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 9132e8a6d31SBarry Smith ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr); 9142798e883SHong Zhang 915c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 916c14dc6b6SHong Zhang ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr); 917c14dc6b6SHong Zhang ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 9182798e883SHong Zhang 919c14dc6b6SHong Zhang /* local sweep */ 920a6c309e7SHong Zhang ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,PETSC_NULL,xx); 921c14dc6b6SHong Zhang CHKERRQ(ierr); 9222798e883SHong Zhang } 9233a40ed3dSBarry Smith } else { 92429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Parallel SOR not supported"); 925c16cb8f2SBarry Smith } 926c14dc6b6SHong Zhang 927c14dc6b6SHong Zhang ierr = VecDestroy(bb1);CHKERRQ(ierr); 9283a40ed3dSBarry Smith PetscFunctionReturn(0); 9298a729477SBarry Smith } 930a66be287SLois Curfman McInnes 9314a2ae208SSatish Balay #undef __FUNCT__ 9324a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIAIJ" 9338f6be9afSLois Curfman McInnes int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,MatInfo *info) 934a66be287SLois Curfman McInnes { 935a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ*)matin->data; 936a66be287SLois Curfman McInnes Mat A = mat->A,B = mat->B; 9374e220ebcSLois Curfman McInnes int ierr; 938329f5518SBarry Smith PetscReal isend[5],irecv[5]; 939a66be287SLois Curfman McInnes 9403a40ed3dSBarry Smith PetscFunctionBegin; 9414e220ebcSLois Curfman McInnes info->block_size = 1.0; 9424e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 9434e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 9444e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 9454e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 9464e220ebcSLois Curfman McInnes isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 9474e220ebcSLois Curfman McInnes isend[3] += info->memory; isend[4] += info->mallocs; 948a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 9494e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 9504e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 9514e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 9524e220ebcSLois Curfman McInnes info->memory = isend[3]; 9534e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 954a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 955d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 9564e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 9574e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 9584e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 9594e220ebcSLois Curfman McInnes info->memory = irecv[3]; 9604e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 961a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 962d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 9634e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 9644e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 9654e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 9664e220ebcSLois Curfman McInnes info->memory = irecv[3]; 9674e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 968a66be287SLois Curfman McInnes } 9694e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 9704e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 9714e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 972273d9f13SBarry Smith info->rows_global = (double)matin->M; 973273d9f13SBarry Smith info->columns_global = (double)matin->N; 974273d9f13SBarry Smith info->rows_local = (double)matin->m; 975273d9f13SBarry Smith info->columns_local = (double)matin->N; 9764e220ebcSLois Curfman McInnes 9773a40ed3dSBarry Smith PetscFunctionReturn(0); 978a66be287SLois Curfman McInnes } 979a66be287SLois Curfman McInnes 9804a2ae208SSatish Balay #undef __FUNCT__ 9814a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIAIJ" 9828f6be9afSLois Curfman McInnes int MatSetOption_MPIAIJ(Mat A,MatOption op) 983c74985f6SBarry Smith { 984c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 9851dee9f54SBarry Smith int ierr; 986c74985f6SBarry Smith 9873a40ed3dSBarry Smith PetscFunctionBegin; 98812c028f9SKris Buschelman switch (op) { 98912c028f9SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 99012c028f9SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 99112c028f9SKris Buschelman case MAT_COLUMNS_UNSORTED: 99212c028f9SKris Buschelman case MAT_COLUMNS_SORTED: 99312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 99412c028f9SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 99512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 99612c028f9SKris Buschelman case MAT_USE_INODES: 99712c028f9SKris Buschelman case MAT_DO_NOT_USE_INODES: 99812c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 9991dee9f54SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 10001dee9f54SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 100112c028f9SKris Buschelman break; 100212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 10037c922b88SBarry Smith a->roworiented = PETSC_TRUE; 10041dee9f54SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 10051dee9f54SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 100612c028f9SKris Buschelman break; 100712c028f9SKris Buschelman case MAT_ROWS_SORTED: 100812c028f9SKris Buschelman case MAT_ROWS_UNSORTED: 100912c028f9SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1010d03495bdSKris Buschelman case MAT_USE_SINGLE_PRECISION_SOLVES: 1011b0a32e0cSBarry Smith PetscLogInfo(A,"MatSetOption_MPIAIJ:Option ignored\n"); 101212c028f9SKris Buschelman break; 101312c028f9SKris Buschelman case MAT_COLUMN_ORIENTED: 10147c922b88SBarry Smith a->roworiented = PETSC_FALSE; 10151dee9f54SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 10161dee9f54SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 101712c028f9SKris Buschelman break; 101812c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 10197c922b88SBarry Smith a->donotstash = PETSC_TRUE; 102012c028f9SKris Buschelman break; 102112c028f9SKris Buschelman case MAT_NO_NEW_DIAGONALS: 102229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 102312c028f9SKris Buschelman default: 102429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 10253a40ed3dSBarry Smith } 10263a40ed3dSBarry Smith PetscFunctionReturn(0); 1027c74985f6SBarry Smith } 1028c74985f6SBarry Smith 10294a2ae208SSatish Balay #undef __FUNCT__ 10304a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIAIJ" 103187828ca2SBarry Smith int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 103239e00950SLois Curfman McInnes { 1033154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ*)matin->data; 103487828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1035154123eaSLois Curfman McInnes int i,ierr,*cworkA,*cworkB,**pcA,**pcB,cstart = mat->cstart; 1036154123eaSLois Curfman McInnes int nztot,nzA,nzB,lrow,rstart = mat->rstart,rend = mat->rend; 103770f0671dSBarry Smith int *cmap,*idx_p; 103839e00950SLois Curfman McInnes 10393a40ed3dSBarry Smith PetscFunctionBegin; 104029bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 10417a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 10427a0afa10SBarry Smith 104370f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 10447a0afa10SBarry Smith /* 10457a0afa10SBarry Smith allocate enough space to hold information from the longest row. 10467a0afa10SBarry Smith */ 10477a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ*)mat->A->data,*Ba = (Mat_SeqAIJ*)mat->B->data; 1048273d9f13SBarry Smith int max = 1,tmp; 1049273d9f13SBarry Smith for (i=0; i<matin->m; i++) { 10507a0afa10SBarry Smith tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 10517a0afa10SBarry Smith if (max < tmp) { max = tmp; } 10527a0afa10SBarry Smith } 105387828ca2SBarry Smith ierr = PetscMalloc(max*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 10547a0afa10SBarry Smith mat->rowindices = (int*)(mat->rowvalues + max); 10557a0afa10SBarry Smith } 10567a0afa10SBarry Smith 105729bbc08cSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Only local rows") 1058abc0e9e4SLois Curfman McInnes lrow = row - rstart; 105939e00950SLois Curfman McInnes 1060154123eaSLois Curfman McInnes pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1061154123eaSLois Curfman McInnes if (!v) {pvA = 0; pvB = 0;} 1062154123eaSLois Curfman McInnes if (!idx) {pcA = 0; if (!v) pcB = 0;} 1063f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1064f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1065154123eaSLois Curfman McInnes nztot = nzA + nzB; 1066154123eaSLois Curfman McInnes 106770f0671dSBarry Smith cmap = mat->garray; 1068154123eaSLois Curfman McInnes if (v || idx) { 1069154123eaSLois Curfman McInnes if (nztot) { 1070154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 107170f0671dSBarry Smith int imark = -1; 1072154123eaSLois Curfman McInnes if (v) { 107370f0671dSBarry Smith *v = v_p = mat->rowvalues; 107439e00950SLois Curfman McInnes for (i=0; i<nzB; i++) { 107570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1076154123eaSLois Curfman McInnes else break; 1077154123eaSLois Curfman McInnes } 1078154123eaSLois Curfman McInnes imark = i; 107970f0671dSBarry Smith for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 108070f0671dSBarry Smith for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1081154123eaSLois Curfman McInnes } 1082154123eaSLois Curfman McInnes if (idx) { 108370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 108470f0671dSBarry Smith if (imark > -1) { 108570f0671dSBarry Smith for (i=0; i<imark; i++) { 108670f0671dSBarry Smith idx_p[i] = cmap[cworkB[i]]; 108770f0671dSBarry Smith } 108870f0671dSBarry Smith } else { 1089154123eaSLois Curfman McInnes for (i=0; i<nzB; i++) { 109070f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1091154123eaSLois Curfman McInnes else break; 1092154123eaSLois Curfman McInnes } 1093154123eaSLois Curfman McInnes imark = i; 109470f0671dSBarry Smith } 109570f0671dSBarry Smith for (i=0; i<nzA; i++) idx_p[imark+i] = cstart + cworkA[i]; 109670f0671dSBarry Smith for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]]; 109739e00950SLois Curfman McInnes } 10983f97c4b0SBarry Smith } else { 10991ca473b0SSatish Balay if (idx) *idx = 0; 11001ca473b0SSatish Balay if (v) *v = 0; 11011ca473b0SSatish Balay } 1102154123eaSLois Curfman McInnes } 110339e00950SLois Curfman McInnes *nz = nztot; 1104f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1105f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 11063a40ed3dSBarry Smith PetscFunctionReturn(0); 110739e00950SLois Curfman McInnes } 110839e00950SLois Curfman McInnes 11094a2ae208SSatish Balay #undef __FUNCT__ 11104a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIAIJ" 111187828ca2SBarry Smith int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 111239e00950SLois Curfman McInnes { 11137a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data; 11143a40ed3dSBarry Smith 11153a40ed3dSBarry Smith PetscFunctionBegin; 11167a0afa10SBarry Smith if (aij->getrowactive == PETSC_FALSE) { 111729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 11187a0afa10SBarry Smith } 11197a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 11203a40ed3dSBarry Smith PetscFunctionReturn(0); 112139e00950SLois Curfman McInnes } 112239e00950SLois Curfman McInnes 11234a2ae208SSatish Balay #undef __FUNCT__ 11244a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIAIJ" 1125329f5518SBarry Smith int MatNorm_MPIAIJ(Mat mat,NormType type,PetscReal *norm) 1126855ac2c5SLois Curfman McInnes { 1127855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data; 1128ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ*)aij->A->data,*bmat = (Mat_SeqAIJ*)aij->B->data; 1129416022c9SBarry Smith int ierr,i,j,cstart = aij->cstart,shift = amat->indexshift; 1130329f5518SBarry Smith PetscReal sum = 0.0; 113187828ca2SBarry Smith PetscScalar *v; 113204ca555eSLois Curfman McInnes 11333a40ed3dSBarry Smith PetscFunctionBegin; 113417699dbbSLois Curfman McInnes if (aij->size == 1) { 113514183eadSLois Curfman McInnes ierr = MatNorm(aij->A,type,norm);CHKERRQ(ierr); 113637fa93a5SLois Curfman McInnes } else { 113704ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 113804ca555eSLois Curfman McInnes v = amat->a; 113904ca555eSLois Curfman McInnes for (i=0; i<amat->nz; i++) { 1140aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 1141329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 114204ca555eSLois Curfman McInnes #else 114304ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 114404ca555eSLois Curfman McInnes #endif 114504ca555eSLois Curfman McInnes } 114604ca555eSLois Curfman McInnes v = bmat->a; 114704ca555eSLois Curfman McInnes for (i=0; i<bmat->nz; i++) { 1148aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 1149329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 115004ca555eSLois Curfman McInnes #else 115104ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 115204ca555eSLois Curfman McInnes #endif 115304ca555eSLois Curfman McInnes } 1154d7d1e502SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 115504ca555eSLois Curfman McInnes *norm = sqrt(*norm); 11563a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1157329f5518SBarry Smith PetscReal *tmp,*tmp2; 115804ca555eSLois Curfman McInnes int *jj,*garray = aij->garray; 1159b0a32e0cSBarry Smith ierr = PetscMalloc((mat->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 1160b0a32e0cSBarry Smith ierr = PetscMalloc((mat->N+1)*sizeof(PetscReal),&tmp2);CHKERRQ(ierr); 1161273d9f13SBarry Smith ierr = PetscMemzero(tmp,mat->N*sizeof(PetscReal));CHKERRQ(ierr); 116204ca555eSLois Curfman McInnes *norm = 0.0; 116304ca555eSLois Curfman McInnes v = amat->a; jj = amat->j; 116404ca555eSLois Curfman McInnes for (j=0; j<amat->nz; j++) { 1165579c6b6fSBarry Smith tmp[cstart + *jj++ + shift] += PetscAbsScalar(*v); v++; 116604ca555eSLois Curfman McInnes } 116704ca555eSLois Curfman McInnes v = bmat->a; jj = bmat->j; 116804ca555eSLois Curfman McInnes for (j=0; j<bmat->nz; j++) { 1169579c6b6fSBarry Smith tmp[garray[*jj++ + shift]] += PetscAbsScalar(*v); v++; 117004ca555eSLois Curfman McInnes } 1171d7d1e502SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 1172273d9f13SBarry Smith for (j=0; j<mat->N; j++) { 117304ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 117404ca555eSLois Curfman McInnes } 1175606d414cSSatish Balay ierr = PetscFree(tmp);CHKERRQ(ierr); 1176606d414cSSatish Balay ierr = PetscFree(tmp2);CHKERRQ(ierr); 11773a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1178329f5518SBarry Smith PetscReal ntemp = 0.0; 1179273d9f13SBarry Smith for (j=0; j<aij->A->m; j++) { 1180dbb450caSBarry Smith v = amat->a + amat->i[j] + shift; 118104ca555eSLois Curfman McInnes sum = 0.0; 118204ca555eSLois Curfman McInnes for (i=0; i<amat->i[j+1]-amat->i[j]; i++) { 1183cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 118404ca555eSLois Curfman McInnes } 1185dbb450caSBarry Smith v = bmat->a + bmat->i[j] + shift; 118604ca555eSLois Curfman McInnes for (i=0; i<bmat->i[j+1]-bmat->i[j]; i++) { 1187cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 118804ca555eSLois Curfman McInnes } 1189515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 119004ca555eSLois Curfman McInnes } 1191d7d1e502SBarry Smith ierr = MPI_Allreduce(&ntemp,norm,1,MPIU_REAL,MPI_MAX,mat->comm);CHKERRQ(ierr); 1192ca161407SBarry Smith } else { 119329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for two norm"); 119404ca555eSLois Curfman McInnes } 119537fa93a5SLois Curfman McInnes } 11963a40ed3dSBarry Smith PetscFunctionReturn(0); 1197855ac2c5SLois Curfman McInnes } 1198855ac2c5SLois Curfman McInnes 11994a2ae208SSatish Balay #undef __FUNCT__ 12004a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIAIJ" 12018f6be9afSLois Curfman McInnes int MatTranspose_MPIAIJ(Mat A,Mat *matout) 1202b7c46309SBarry Smith { 1203b7c46309SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 1204dbb450caSBarry Smith Mat_SeqAIJ *Aloc = (Mat_SeqAIJ*)a->A->data; 1205416022c9SBarry Smith int ierr,shift = Aloc->indexshift; 1206273d9f13SBarry Smith int M = A->M,N = A->N,m,*ai,*aj,row,*cols,i,*ct; 12073a40ed3dSBarry Smith Mat B; 120887828ca2SBarry Smith PetscScalar *array; 1209b7c46309SBarry Smith 12103a40ed3dSBarry Smith PetscFunctionBegin; 12117c922b88SBarry Smith if (!matout && M != N) { 121229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1213d4bb536fSBarry Smith } 1214d4bb536fSBarry Smith 1215273d9f13SBarry Smith ierr = MatCreateMPIAIJ(A->comm,A->n,A->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr); 1216b7c46309SBarry Smith 1217b7c46309SBarry Smith /* copy over the A part */ 1218ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*)a->A->data; 1219273d9f13SBarry Smith m = a->A->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1220b7c46309SBarry Smith row = a->rstart; 1221dbb450caSBarry Smith for (i=0; i<ai[m]+shift; i++) {aj[i] += a->cstart + shift;} 1222b7c46309SBarry Smith for (i=0; i<m; i++) { 1223416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1224b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 1225b7c46309SBarry Smith } 1226b7c46309SBarry Smith aj = Aloc->j; 12274af08d9eSBarry Smith for (i=0; i<ai[m]+shift; i++) {aj[i] -= a->cstart + shift;} 1228b7c46309SBarry Smith 1229b7c46309SBarry Smith /* copy over the B part */ 1230ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*)a->B->data; 1231273d9f13SBarry Smith m = a->B->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1232b7c46309SBarry Smith row = a->rstart; 1233b0a32e0cSBarry Smith ierr = PetscMalloc((1+ai[m]-shift)*sizeof(int),&cols);CHKERRQ(ierr); 1234b0a32e0cSBarry Smith ct = cols; 1235dbb450caSBarry Smith for (i=0; i<ai[m]+shift; i++) {cols[i] = a->garray[aj[i]+shift];} 1236b7c46309SBarry Smith for (i=0; i<m; i++) { 1237416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1238b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 1239b7c46309SBarry Smith } 1240606d414cSSatish Balay ierr = PetscFree(ct);CHKERRQ(ierr); 12416d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12426d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12437c922b88SBarry Smith if (matout) { 12440de55854SLois Curfman McInnes *matout = B; 12450de55854SLois Curfman McInnes } else { 1246273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 12470de55854SLois Curfman McInnes } 12483a40ed3dSBarry Smith PetscFunctionReturn(0); 1249b7c46309SBarry Smith } 1250b7c46309SBarry Smith 12514a2ae208SSatish Balay #undef __FUNCT__ 12524a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIAIJ" 12534b967eb1SSatish Balay int MatDiagonalScale_MPIAIJ(Mat mat,Vec ll,Vec rr) 1254a008b906SSatish Balay { 12554b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data; 12564b967eb1SSatish Balay Mat a = aij->A,b = aij->B; 1257a008b906SSatish Balay int ierr,s1,s2,s3; 1258a008b906SSatish Balay 12593a40ed3dSBarry Smith PetscFunctionBegin; 12604b967eb1SSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 12614b967eb1SSatish Balay if (rr) { 1262e1311b90SBarry Smith ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 126329bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 12644b967eb1SSatish Balay /* Overlap communication with computation. */ 126543a90d84SBarry Smith ierr = VecScatterBegin(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx);CHKERRQ(ierr); 1266a008b906SSatish Balay } 12674b967eb1SSatish Balay if (ll) { 1268e1311b90SBarry Smith ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 126929bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1270f830108cSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,0);CHKERRQ(ierr); 12714b967eb1SSatish Balay } 12724b967eb1SSatish Balay /* scale the diagonal block */ 1273f830108cSBarry Smith ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 12744b967eb1SSatish Balay 12754b967eb1SSatish Balay if (rr) { 12764b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 127743a90d84SBarry Smith ierr = VecScatterEnd(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx);CHKERRQ(ierr); 1278f830108cSBarry Smith ierr = (*b->ops->diagonalscale)(b,0,aij->lvec);CHKERRQ(ierr); 12794b967eb1SSatish Balay } 12804b967eb1SSatish Balay 12813a40ed3dSBarry Smith PetscFunctionReturn(0); 1282a008b906SSatish Balay } 1283a008b906SSatish Balay 1284a008b906SSatish Balay 12854a2ae208SSatish Balay #undef __FUNCT__ 12864a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPIAIJ" 12878f6be9afSLois Curfman McInnes int MatPrintHelp_MPIAIJ(Mat A) 1288682d7d0cSBarry Smith { 1289682d7d0cSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 12903a40ed3dSBarry Smith int ierr; 1291682d7d0cSBarry Smith 12923a40ed3dSBarry Smith PetscFunctionBegin; 12933a40ed3dSBarry Smith if (!a->rank) { 12943a40ed3dSBarry Smith ierr = MatPrintHelp_SeqAIJ(a->A);CHKERRQ(ierr); 12953a40ed3dSBarry Smith } 12963a40ed3dSBarry Smith PetscFunctionReturn(0); 1297682d7d0cSBarry Smith } 1298682d7d0cSBarry Smith 12994a2ae208SSatish Balay #undef __FUNCT__ 13004a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPIAIJ" 13018f6be9afSLois Curfman McInnes int MatGetBlockSize_MPIAIJ(Mat A,int *bs) 13025a838052SSatish Balay { 13033a40ed3dSBarry Smith PetscFunctionBegin; 13045a838052SSatish Balay *bs = 1; 13053a40ed3dSBarry Smith PetscFunctionReturn(0); 13065a838052SSatish Balay } 13074a2ae208SSatish Balay #undef __FUNCT__ 13084a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIAIJ" 13098f6be9afSLois Curfman McInnes int MatSetUnfactored_MPIAIJ(Mat A) 1310bb5a7306SBarry Smith { 1311bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 1312bb5a7306SBarry Smith int ierr; 13133a40ed3dSBarry Smith 13143a40ed3dSBarry Smith PetscFunctionBegin; 1315bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 13163a40ed3dSBarry Smith PetscFunctionReturn(0); 1317bb5a7306SBarry Smith } 1318bb5a7306SBarry Smith 13194a2ae208SSatish Balay #undef __FUNCT__ 13204a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIAIJ" 1321d4bb536fSBarry Smith int MatEqual_MPIAIJ(Mat A,Mat B,PetscTruth *flag) 1322d4bb536fSBarry Smith { 1323d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ*)B->data,*matA = (Mat_MPIAIJ*)A->data; 1324d4bb536fSBarry Smith Mat a,b,c,d; 1325d4bb536fSBarry Smith PetscTruth flg; 1326d4bb536fSBarry Smith int ierr; 1327d4bb536fSBarry Smith 13283a40ed3dSBarry Smith PetscFunctionBegin; 1329273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPIAIJ,&flg);CHKERRQ(ierr); 1330273d9f13SBarry Smith if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 1331d4bb536fSBarry Smith a = matA->A; b = matA->B; 1332d4bb536fSBarry Smith c = matB->A; d = matB->B; 1333d4bb536fSBarry Smith 1334d4bb536fSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1335d4bb536fSBarry Smith if (flg == PETSC_TRUE) { 1336d4bb536fSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 1337d4bb536fSBarry Smith } 1338ca161407SBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 13393a40ed3dSBarry Smith PetscFunctionReturn(0); 1340d4bb536fSBarry Smith } 1341d4bb536fSBarry Smith 13424a2ae208SSatish Balay #undef __FUNCT__ 13434a2ae208SSatish Balay #define __FUNCT__ "MatCopy_MPIAIJ" 1344cb5b572fSBarry Smith int MatCopy_MPIAIJ(Mat A,Mat B,MatStructure str) 1345cb5b572fSBarry Smith { 1346cb5b572fSBarry Smith int ierr; 1347cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1348cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 1349273d9f13SBarry Smith PetscTruth flg; 1350cb5b572fSBarry Smith 1351cb5b572fSBarry Smith PetscFunctionBegin; 1352273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPIAIJ,&flg);CHKERRQ(ierr); 1353273d9f13SBarry Smith if (str != SAME_NONZERO_PATTERN || !flg) { 1354cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 1355cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 1356cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 1357cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 1358cb5b572fSBarry Smith then copying the submatrices */ 1359cb5b572fSBarry Smith ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 1360cb5b572fSBarry Smith } else { 1361cb5b572fSBarry Smith ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 1362cb5b572fSBarry Smith ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 1363cb5b572fSBarry Smith } 1364cb5b572fSBarry Smith PetscFunctionReturn(0); 1365cb5b572fSBarry Smith } 1366cb5b572fSBarry Smith 13674a2ae208SSatish Balay #undef __FUNCT__ 13684a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIAIJ" 1369273d9f13SBarry Smith int MatSetUpPreallocation_MPIAIJ(Mat A) 1370273d9f13SBarry Smith { 1371273d9f13SBarry Smith int ierr; 1372273d9f13SBarry Smith 1373273d9f13SBarry Smith PetscFunctionBegin; 1374273d9f13SBarry Smith ierr = MatMPIAIJSetPreallocation(A,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1375273d9f13SBarry Smith PetscFunctionReturn(0); 1376273d9f13SBarry Smith } 1377273d9f13SBarry Smith 1378ca44d042SBarry Smith EXTERN int MatDuplicate_MPIAIJ(Mat,MatDuplicateOption,Mat *); 1379ca44d042SBarry Smith EXTERN int MatIncreaseOverlap_MPIAIJ(Mat,int,IS *,int); 1380ca44d042SBarry Smith EXTERN int MatFDColoringCreate_MPIAIJ(Mat,ISColoring,MatFDColoring); 1381ca44d042SBarry Smith EXTERN int MatGetSubMatrices_MPIAIJ (Mat,int,IS *,IS *,MatReuse,Mat **); 1382ca44d042SBarry Smith EXTERN int MatGetSubMatrix_MPIAIJ (Mat,IS,IS,int,MatReuse,Mat *); 138387828ca2SBarry Smith #if !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_SINGLE) 1384b9617806SBarry Smith EXTERN int MatLUFactorSymbolic_MPIAIJ_TFS(Mat,IS,IS,MatLUInfo*,Mat*); 1385b9617806SBarry Smith #endif 138600e6dbe6SBarry Smith 1387ac90fabeSBarry Smith #include "petscblaslapack.h" 1388ac90fabeSBarry Smith 1389ac90fabeSBarry Smith #undef __FUNCT__ 1390ac90fabeSBarry Smith #define __FUNCT__ "MatAXPY_MPIAIJ" 1391ac90fabeSBarry Smith int MatAXPY_MPIAIJ(PetscScalar *a,Mat X,Mat Y,MatStructure str) 1392ac90fabeSBarry Smith { 1393ac90fabeSBarry Smith int ierr,one; 1394ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data,*yy = (Mat_MPIAIJ *)Y->data; 1395ac90fabeSBarry Smith Mat_SeqAIJ *x,*y; 1396ac90fabeSBarry Smith 1397ac90fabeSBarry Smith PetscFunctionBegin; 1398ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 1399ac90fabeSBarry Smith x = (Mat_SeqAIJ *)xx->A->data; 1400ac90fabeSBarry Smith y = (Mat_SeqAIJ *)yy->A->data; 1401ac90fabeSBarry Smith BLaxpy_(&x->nz,a,x->a,&one,y->a,&one); 1402ac90fabeSBarry Smith x = (Mat_SeqAIJ *)xx->B->data; 1403ac90fabeSBarry Smith y = (Mat_SeqAIJ *)yy->B->data; 1404ac90fabeSBarry Smith BLaxpy_(&x->nz,a,x->a,&one,y->a,&one); 1405ac90fabeSBarry Smith } else { 1406ac90fabeSBarry Smith ierr = MatAXPY_Basic(a,X,Y,str);CHKERRQ(ierr); 1407ac90fabeSBarry Smith } 1408ac90fabeSBarry Smith PetscFunctionReturn(0); 1409ac90fabeSBarry Smith } 1410ac90fabeSBarry Smith 14118a729477SBarry Smith /* -------------------------------------------------------------------*/ 1412cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 1413cda55fadSBarry Smith MatGetRow_MPIAIJ, 1414cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 1415cda55fadSBarry Smith MatMult_MPIAIJ, 1416cda55fadSBarry Smith MatMultAdd_MPIAIJ, 14177c922b88SBarry Smith MatMultTranspose_MPIAIJ, 14187c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 1419cda55fadSBarry Smith 0, 1420cda55fadSBarry Smith 0, 1421cda55fadSBarry Smith 0, 1422cda55fadSBarry Smith 0, 1423cda55fadSBarry Smith 0, 1424cda55fadSBarry Smith 0, 142544a69424SLois Curfman McInnes MatRelax_MPIAIJ, 1426b7c46309SBarry Smith MatTranspose_MPIAIJ, 1427cda55fadSBarry Smith MatGetInfo_MPIAIJ, 1428cda55fadSBarry Smith MatEqual_MPIAIJ, 1429cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 1430cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 1431cda55fadSBarry Smith MatNorm_MPIAIJ, 1432cda55fadSBarry Smith MatAssemblyBegin_MPIAIJ, 1433cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 14341eb62cbbSBarry Smith 0, 1435cda55fadSBarry Smith MatSetOption_MPIAIJ, 1436cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 1437cda55fadSBarry Smith MatZeroRows_MPIAIJ, 143887828ca2SBarry Smith #if !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_SINGLE) 1439b9617806SBarry Smith MatLUFactorSymbolic_MPIAIJ_TFS, 1440b9617806SBarry Smith #else 1441cda55fadSBarry Smith 0, 1442b9617806SBarry Smith #endif 1443cda55fadSBarry Smith 0, 1444cda55fadSBarry Smith 0, 1445cda55fadSBarry Smith 0, 1446273d9f13SBarry Smith MatSetUpPreallocation_MPIAIJ, 1447cda55fadSBarry Smith 0, 1448cda55fadSBarry Smith 0, 1449cda55fadSBarry Smith 0, 1450cda55fadSBarry Smith 0, 14512e8a6d31SBarry Smith MatDuplicate_MPIAIJ, 1452cda55fadSBarry Smith 0, 1453cda55fadSBarry Smith 0, 1454cda55fadSBarry Smith 0, 1455cda55fadSBarry Smith 0, 1456ac90fabeSBarry Smith MatAXPY_MPIAIJ, 1457cda55fadSBarry Smith MatGetSubMatrices_MPIAIJ, 1458cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 1459cda55fadSBarry Smith MatGetValues_MPIAIJ, 1460cb5b572fSBarry Smith MatCopy_MPIAIJ, 1461052efed2SBarry Smith MatPrintHelp_MPIAIJ, 1462cda55fadSBarry Smith MatScale_MPIAIJ, 1463cda55fadSBarry Smith 0, 1464cda55fadSBarry Smith 0, 1465cda55fadSBarry Smith 0, 1466cda55fadSBarry Smith MatGetBlockSize_MPIAIJ, 1467cda55fadSBarry Smith 0, 1468cda55fadSBarry Smith 0, 1469cda55fadSBarry Smith 0, 1470cda55fadSBarry Smith 0, 1471cda55fadSBarry Smith MatFDColoringCreate_MPIAIJ, 1472cda55fadSBarry Smith 0, 1473cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 1474cda55fadSBarry Smith 0, 1475cda55fadSBarry Smith 0, 1476cda55fadSBarry Smith MatGetSubMatrix_MPIAIJ, 1477e03a110bSBarry Smith MatDestroy_MPIAIJ, 1478e03a110bSBarry Smith MatView_MPIAIJ, 14798a124369SBarry Smith MatGetPetscMaps_Petsc, 1480a2243be0SBarry Smith 0, 1481a2243be0SBarry Smith 0, 1482a2243be0SBarry Smith 0, 1483a2243be0SBarry Smith 0, 1484a2243be0SBarry Smith 0, 1485a2243be0SBarry Smith 0, 1486a2243be0SBarry Smith 0, 1487a2243be0SBarry Smith 0, 1488a2243be0SBarry Smith MatSetColoring_MPIAIJ, 1489779c1a83SBarry Smith MatSetValuesAdic_MPIAIJ, 1490779c1a83SBarry Smith MatSetValuesAdifor_MPIAIJ 1491a2243be0SBarry Smith }; 149236ce4990SBarry Smith 14932e8a6d31SBarry Smith /* ----------------------------------------------------------------------------------------*/ 14942e8a6d31SBarry Smith 1495fb2e594dSBarry Smith EXTERN_C_BEGIN 14964a2ae208SSatish Balay #undef __FUNCT__ 14974a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIAIJ" 14982e8a6d31SBarry Smith int MatStoreValues_MPIAIJ(Mat mat) 14992e8a6d31SBarry Smith { 15002e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 15012e8a6d31SBarry Smith int ierr; 15022e8a6d31SBarry Smith 15032e8a6d31SBarry Smith PetscFunctionBegin; 15042e8a6d31SBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 15052e8a6d31SBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 15062e8a6d31SBarry Smith PetscFunctionReturn(0); 15072e8a6d31SBarry Smith } 1508fb2e594dSBarry Smith EXTERN_C_END 15092e8a6d31SBarry Smith 1510fb2e594dSBarry Smith EXTERN_C_BEGIN 15114a2ae208SSatish Balay #undef __FUNCT__ 15124a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIAIJ" 15132e8a6d31SBarry Smith int MatRetrieveValues_MPIAIJ(Mat mat) 15142e8a6d31SBarry Smith { 15152e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 15162e8a6d31SBarry Smith int ierr; 15172e8a6d31SBarry Smith 15182e8a6d31SBarry Smith PetscFunctionBegin; 15192e8a6d31SBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 15202e8a6d31SBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 15212e8a6d31SBarry Smith PetscFunctionReturn(0); 15222e8a6d31SBarry Smith } 1523fb2e594dSBarry Smith EXTERN_C_END 15248a729477SBarry Smith 1525e090d566SSatish Balay #include "petscpc.h" 152627508adbSBarry Smith EXTERN_C_BEGIN 1527ca44d042SBarry Smith EXTERN int MatGetDiagonalBlock_MPIAIJ(Mat,PetscTruth *,MatReuse,Mat *); 152827508adbSBarry Smith EXTERN_C_END 152927508adbSBarry Smith 1530273d9f13SBarry Smith EXTERN_C_BEGIN 15314a2ae208SSatish Balay #undef __FUNCT__ 15324a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIAIJ" 1533273d9f13SBarry Smith int MatCreate_MPIAIJ(Mat B) 15348a729477SBarry Smith { 153544cd7ae7SLois Curfman McInnes Mat_MPIAIJ *b; 1536f1af5d2fSBarry Smith int ierr,i,size; 1537416022c9SBarry Smith 15383a40ed3dSBarry Smith PetscFunctionBegin; 1539273d9f13SBarry Smith ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr); 15401d55c564SBarry Smith 1541b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPIAIJ,&b);CHKERRQ(ierr); 1542b0a32e0cSBarry Smith B->data = (void*)b; 1543549d3d68SSatish Balay ierr = PetscMemzero(b,sizeof(Mat_MPIAIJ));CHKERRQ(ierr); 1544549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 154544cd7ae7SLois Curfman McInnes B->factor = 0; 154644cd7ae7SLois Curfman McInnes B->assembled = PETSC_FALSE; 154790f02eecSBarry Smith B->mapping = 0; 1548d6dfbf8fSBarry Smith 154947794344SBarry Smith B->insertmode = NOT_SET_VALUES; 15509eb4d147SSatish Balay b->size = size; 1551273d9f13SBarry Smith ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 15521eb62cbbSBarry Smith 1553273d9f13SBarry Smith ierr = PetscSplitOwnership(B->comm,&B->m,&B->M);CHKERRQ(ierr); 1554273d9f13SBarry Smith ierr = PetscSplitOwnership(B->comm,&B->n,&B->N);CHKERRQ(ierr); 15551eb62cbbSBarry Smith 1556c7fcc2eaSBarry Smith /* the information in the maps duplicates the information computed below, eventually 1557c7fcc2eaSBarry Smith we should remove the duplicate information that is not contained in the maps */ 15588a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 15598a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr); 1560c7fcc2eaSBarry Smith 15611eb62cbbSBarry Smith /* build local table of row and column ownerships */ 1562b0a32e0cSBarry Smith ierr = PetscMalloc(2*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1563b0a32e0cSBarry Smith PetscLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIAIJ)); 1564603f58a4SSatish Balay b->cowners = b->rowners + b->size + 2; 1565273d9f13SBarry Smith ierr = MPI_Allgather(&B->m,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 156644cd7ae7SLois Curfman McInnes b->rowners[0] = 0; 156744cd7ae7SLois Curfman McInnes for (i=2; i<=b->size; i++) { 156844cd7ae7SLois Curfman McInnes b->rowners[i] += b->rowners[i-1]; 15698a729477SBarry Smith } 157044cd7ae7SLois Curfman McInnes b->rstart = b->rowners[b->rank]; 157144cd7ae7SLois Curfman McInnes b->rend = b->rowners[b->rank+1]; 1572273d9f13SBarry Smith ierr = MPI_Allgather(&B->n,1,MPI_INT,b->cowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 157344cd7ae7SLois Curfman McInnes b->cowners[0] = 0; 157444cd7ae7SLois Curfman McInnes for (i=2; i<=b->size; i++) { 157544cd7ae7SLois Curfman McInnes b->cowners[i] += b->cowners[i-1]; 15768a729477SBarry Smith } 157744cd7ae7SLois Curfman McInnes b->cstart = b->cowners[b->rank]; 157844cd7ae7SLois Curfman McInnes b->cend = b->cowners[b->rank+1]; 15798a729477SBarry Smith 15801eb62cbbSBarry Smith /* build cache for off array entries formed */ 15817e2c5f70SBarry Smith ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 15827c922b88SBarry Smith b->donotstash = PETSC_FALSE; 158344cd7ae7SLois Curfman McInnes b->colmap = 0; 158444cd7ae7SLois Curfman McInnes b->garray = 0; 15857c922b88SBarry Smith b->roworiented = PETSC_TRUE; 15868a729477SBarry Smith 15871eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 15887c922b88SBarry Smith b->lvec = PETSC_NULL; 15897c922b88SBarry Smith b->Mvctx = PETSC_NULL; 15908a729477SBarry Smith 15917a0afa10SBarry Smith /* stuff for MatGetRow() */ 159244cd7ae7SLois Curfman McInnes b->rowindices = 0; 159344cd7ae7SLois Curfman McInnes b->rowvalues = 0; 159444cd7ae7SLois Curfman McInnes b->getrowactive = PETSC_FALSE; 15951a8d6bc9SBarry Smith 1596f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 15972e8a6d31SBarry Smith "MatStoreValues_MPIAIJ", 15980c97f09dSSatish Balay MatStoreValues_MPIAIJ);CHKERRQ(ierr); 1599f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 16002e8a6d31SBarry Smith "MatRetrieveValues_MPIAIJ", 16010c97f09dSSatish Balay MatRetrieveValues_MPIAIJ);CHKERRQ(ierr); 1602f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 16035ef9f2a5SBarry Smith "MatGetDiagonalBlock_MPIAIJ", 16040c97f09dSSatish Balay MatGetDiagonalBlock_MPIAIJ);CHKERRQ(ierr); 16059b9367d5SHong Zhang 16063a40ed3dSBarry Smith PetscFunctionReturn(0); 1607d6dfbf8fSBarry Smith } 1608273d9f13SBarry Smith EXTERN_C_END 1609c74985f6SBarry Smith 16104a2ae208SSatish Balay #undef __FUNCT__ 16114a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIAIJ" 16122e8a6d31SBarry Smith int MatDuplicate_MPIAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 1613d6dfbf8fSBarry Smith { 1614d6dfbf8fSBarry Smith Mat mat; 1615416022c9SBarry Smith Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ*)matin->data; 161616d6aa21SSatish Balay int ierr; 1617d6dfbf8fSBarry Smith 16183a40ed3dSBarry Smith PetscFunctionBegin; 1619416022c9SBarry Smith *newmat = 0; 1620273d9f13SBarry Smith ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 1621273d9f13SBarry Smith ierr = MatSetType(mat,MATMPIAIJ);CHKERRQ(ierr); 1622273d9f13SBarry Smith a = (Mat_MPIAIJ*)mat->data; 1623549d3d68SSatish Balay ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1624d6dfbf8fSBarry Smith mat->factor = matin->factor; 1625c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1626e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 1627273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 1628d6dfbf8fSBarry Smith 1629416022c9SBarry Smith a->rstart = oldmat->rstart; 1630416022c9SBarry Smith a->rend = oldmat->rend; 1631416022c9SBarry Smith a->cstart = oldmat->cstart; 1632416022c9SBarry Smith a->cend = oldmat->cend; 163317699dbbSLois Curfman McInnes a->size = oldmat->size; 163417699dbbSLois Curfman McInnes a->rank = oldmat->rank; 1635e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 1636e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 1637e7641de0SSatish Balay a->rowindices = 0; 1638bcd2baecSBarry Smith a->rowvalues = 0; 1639bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 1640d6dfbf8fSBarry Smith 1641549d3d68SSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int));CHKERRQ(ierr); 16428798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 16432ee70a88SLois Curfman McInnes if (oldmat->colmap) { 1644aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 16450f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 1646b1fc9764SSatish Balay #else 1647b0a32e0cSBarry Smith ierr = PetscMalloc((mat->N)*sizeof(int),&a->colmap);CHKERRQ(ierr); 1648b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(mat->N)*sizeof(int)); 1649273d9f13SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(mat->N)*sizeof(int));CHKERRQ(ierr); 1650b1fc9764SSatish Balay #endif 1651416022c9SBarry Smith } else a->colmap = 0; 16523f41c07dSBarry Smith if (oldmat->garray) { 165316d6aa21SSatish Balay int len; 1654273d9f13SBarry Smith len = oldmat->B->n; 1655b0a32e0cSBarry Smith ierr = PetscMalloc((len+1)*sizeof(int),&a->garray);CHKERRQ(ierr); 1656b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 1657549d3d68SSatish Balay if (len) { ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); } 1658416022c9SBarry Smith } else a->garray = 0; 1659d6dfbf8fSBarry Smith 1660416022c9SBarry Smith ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 1661b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 1662a56f8943SBarry Smith ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 1663b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 16642e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1665b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 16662e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 1667b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 1668b0a32e0cSBarry Smith ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr); 16698a729477SBarry Smith *newmat = mat; 16703a40ed3dSBarry Smith PetscFunctionReturn(0); 16718a729477SBarry Smith } 1672416022c9SBarry Smith 1673e090d566SSatish Balay #include "petscsys.h" 1674416022c9SBarry Smith 1675273d9f13SBarry Smith EXTERN_C_BEGIN 16764a2ae208SSatish Balay #undef __FUNCT__ 16774a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIAIJ" 1678b0a32e0cSBarry Smith int MatLoad_MPIAIJ(PetscViewer viewer,MatType type,Mat *newmat) 1679416022c9SBarry Smith { 1680d65a2f8fSBarry Smith Mat A; 168187828ca2SBarry Smith PetscScalar *vals,*svals; 168219bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 1683416022c9SBarry Smith MPI_Status status; 16843a40ed3dSBarry Smith int i,nz,ierr,j,rstart,rend,fd; 168517699dbbSLois Curfman McInnes int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 1686d65a2f8fSBarry Smith int *ourlens,*sndcounts = 0,*procsnz = 0,*offlens,jj,*mycols,*smycols; 1687b362ba68SBarry Smith int tag = ((PetscObject)viewer)->tag,cend,cstart,n; 1688416022c9SBarry Smith 16893a40ed3dSBarry Smith PetscFunctionBegin; 16901dab6e02SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 16911dab6e02SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 169217699dbbSLois Curfman McInnes if (!rank) { 1693b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 16940752156aSBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 1695552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 1696d64ed03dSBarry Smith if (header[3] < 0) { 169729bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix in special format on disk, cannot load as MPIAIJ"); 1698d64ed03dSBarry Smith } 16996c5fab8fSBarry Smith } 17006c5fab8fSBarry Smith 1701ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 1702416022c9SBarry Smith M = header[1]; N = header[2]; 1703416022c9SBarry Smith /* determine ownership of all rows */ 170417699dbbSLois Curfman McInnes m = M/size + ((M % size) > rank); 1705b0a32e0cSBarry Smith ierr = PetscMalloc((size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 1706ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 1707416022c9SBarry Smith rowners[0] = 0; 170817699dbbSLois Curfman McInnes for (i=2; i<=size; i++) { 1709416022c9SBarry Smith rowners[i] += rowners[i-1]; 1710416022c9SBarry Smith } 171117699dbbSLois Curfman McInnes rstart = rowners[rank]; 171217699dbbSLois Curfman McInnes rend = rowners[rank+1]; 1713416022c9SBarry Smith 1714416022c9SBarry Smith /* distribute row lengths to all processors */ 1715b0a32e0cSBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&ourlens);CHKERRQ(ierr); 1716416022c9SBarry Smith offlens = ourlens + (rend-rstart); 171717699dbbSLois Curfman McInnes if (!rank) { 1718b0a32e0cSBarry Smith ierr = PetscMalloc(M*sizeof(int),&rowlengths);CHKERRQ(ierr); 17190752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1720b0a32e0cSBarry Smith ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 172117699dbbSLois Curfman McInnes for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 1722ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr); 1723606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 17243a40ed3dSBarry Smith } else { 1725ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr); 1726416022c9SBarry Smith } 1727416022c9SBarry Smith 172817699dbbSLois Curfman McInnes if (!rank) { 1729416022c9SBarry Smith /* calculate the number of nonzeros on each processor */ 1730b0a32e0cSBarry Smith ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 1731549d3d68SSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 173217699dbbSLois Curfman McInnes for (i=0; i<size; i++) { 1733416022c9SBarry Smith for (j=rowners[i]; j< rowners[i+1]; j++) { 1734416022c9SBarry Smith procsnz[i] += rowlengths[j]; 1735416022c9SBarry Smith } 1736416022c9SBarry Smith } 1737606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 1738416022c9SBarry Smith 1739416022c9SBarry Smith /* determine max buffer needed and allocate it */ 1740416022c9SBarry Smith maxnz = 0; 174117699dbbSLois Curfman McInnes for (i=0; i<size; i++) { 17420452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 1743416022c9SBarry Smith } 1744b0a32e0cSBarry Smith ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 1745416022c9SBarry Smith 1746416022c9SBarry Smith /* read in my part of the matrix column indices */ 1747416022c9SBarry Smith nz = procsnz[0]; 1748b0a32e0cSBarry Smith ierr = PetscMalloc(nz*sizeof(int),&mycols);CHKERRQ(ierr); 17490752156aSBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 1750d65a2f8fSBarry Smith 1751d65a2f8fSBarry Smith /* read in every one elses and ship off */ 175217699dbbSLois Curfman McInnes for (i=1; i<size; i++) { 1753d65a2f8fSBarry Smith nz = procsnz[i]; 17540752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 1755ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 1756d65a2f8fSBarry Smith } 1757606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 17583a40ed3dSBarry Smith } else { 1759416022c9SBarry Smith /* determine buffer space needed for message */ 1760416022c9SBarry Smith nz = 0; 1761416022c9SBarry Smith for (i=0; i<m; i++) { 1762416022c9SBarry Smith nz += ourlens[i]; 1763416022c9SBarry Smith } 1764b0a32e0cSBarry Smith ierr = PetscMalloc((nz+1)*sizeof(int),&mycols);CHKERRQ(ierr); 1765416022c9SBarry Smith 1766416022c9SBarry Smith /* receive message of column indices*/ 1767ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 1768ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 176929bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 1770416022c9SBarry Smith } 1771416022c9SBarry Smith 1772b362ba68SBarry Smith /* determine column ownership if matrix is not square */ 1773b362ba68SBarry Smith if (N != M) { 1774b362ba68SBarry Smith n = N/size + ((N % size) > rank); 1775b362ba68SBarry Smith ierr = MPI_Scan(&n,&cend,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 1776b362ba68SBarry Smith cstart = cend - n; 1777b362ba68SBarry Smith } else { 1778b362ba68SBarry Smith cstart = rstart; 1779b362ba68SBarry Smith cend = rend; 1780fb2e594dSBarry Smith n = cend - cstart; 1781b362ba68SBarry Smith } 1782b362ba68SBarry Smith 1783416022c9SBarry Smith /* loop over local rows, determining number of off diagonal entries */ 1784549d3d68SSatish Balay ierr = PetscMemzero(offlens,m*sizeof(int));CHKERRQ(ierr); 1785416022c9SBarry Smith jj = 0; 1786416022c9SBarry Smith for (i=0; i<m; i++) { 1787416022c9SBarry Smith for (j=0; j<ourlens[i]; j++) { 1788b362ba68SBarry Smith if (mycols[jj] < cstart || mycols[jj] >= cend) offlens[i]++; 1789416022c9SBarry Smith jj++; 1790416022c9SBarry Smith } 1791416022c9SBarry Smith } 1792d65a2f8fSBarry Smith 1793d65a2f8fSBarry Smith /* create our matrix */ 1794416022c9SBarry Smith for (i=0; i<m; i++) { 1795416022c9SBarry Smith ourlens[i] -= offlens[i]; 1796416022c9SBarry Smith } 1797b362ba68SBarry Smith ierr = MatCreateMPIAIJ(comm,m,n,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1798d65a2f8fSBarry Smith A = *newmat; 1799fb2e594dSBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 1800d65a2f8fSBarry Smith for (i=0; i<m; i++) { 1801d65a2f8fSBarry Smith ourlens[i] += offlens[i]; 1802d65a2f8fSBarry Smith } 1803416022c9SBarry Smith 180417699dbbSLois Curfman McInnes if (!rank) { 180587828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 1806416022c9SBarry Smith 1807416022c9SBarry Smith /* read in my part of the matrix numerical values */ 1808416022c9SBarry Smith nz = procsnz[0]; 18090752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1810d65a2f8fSBarry Smith 1811d65a2f8fSBarry Smith /* insert into matrix */ 1812d65a2f8fSBarry Smith jj = rstart; 1813d65a2f8fSBarry Smith smycols = mycols; 1814d65a2f8fSBarry Smith svals = vals; 1815d65a2f8fSBarry Smith for (i=0; i<m; i++) { 1816d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1817d65a2f8fSBarry Smith smycols += ourlens[i]; 1818d65a2f8fSBarry Smith svals += ourlens[i]; 1819d65a2f8fSBarry Smith jj++; 1820416022c9SBarry Smith } 1821416022c9SBarry Smith 1822d65a2f8fSBarry Smith /* read in other processors and ship out */ 182317699dbbSLois Curfman McInnes for (i=1; i<size; i++) { 1824416022c9SBarry Smith nz = procsnz[i]; 18250752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1826ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 1827416022c9SBarry Smith } 1828606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 18293a40ed3dSBarry Smith } else { 1830d65a2f8fSBarry Smith /* receive numeric values */ 183187828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 1832416022c9SBarry Smith 1833d65a2f8fSBarry Smith /* receive message of values*/ 1834ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 1835ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 183629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 1837d65a2f8fSBarry Smith 1838d65a2f8fSBarry Smith /* insert into matrix */ 1839d65a2f8fSBarry Smith jj = rstart; 1840d65a2f8fSBarry Smith smycols = mycols; 1841d65a2f8fSBarry Smith svals = vals; 1842d65a2f8fSBarry Smith for (i=0; i<m; i++) { 1843d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1844d65a2f8fSBarry Smith smycols += ourlens[i]; 1845d65a2f8fSBarry Smith svals += ourlens[i]; 1846d65a2f8fSBarry Smith jj++; 1847d65a2f8fSBarry Smith } 1848d65a2f8fSBarry Smith } 1849606d414cSSatish Balay ierr = PetscFree(ourlens);CHKERRQ(ierr); 1850606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 1851606d414cSSatish Balay ierr = PetscFree(mycols);CHKERRQ(ierr); 1852606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 1853d65a2f8fSBarry Smith 18546d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18556d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18563a40ed3dSBarry Smith PetscFunctionReturn(0); 1857416022c9SBarry Smith } 1858273d9f13SBarry Smith EXTERN_C_END 1859a0ff6018SBarry Smith 18604a2ae208SSatish Balay #undef __FUNCT__ 18614a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIAIJ" 1862a0ff6018SBarry Smith /* 186329da9460SBarry Smith Not great since it makes two copies of the submatrix, first an SeqAIJ 186429da9460SBarry Smith in local and then by concatenating the local matrices the end result. 186529da9460SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIAIJ() 1866a0ff6018SBarry Smith */ 18677b2a1423SBarry Smith int MatGetSubMatrix_MPIAIJ(Mat mat,IS isrow,IS iscol,int csize,MatReuse call,Mat *newmat) 1868a0ff6018SBarry Smith { 186900e6dbe6SBarry Smith int ierr,i,m,n,rstart,row,rend,nz,*cwork,size,rank,j; 18707e2c5f70SBarry Smith int *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend; 1871fee21e36SBarry Smith Mat *local,M,Mreuse; 187287828ca2SBarry Smith PetscScalar *vwork,*aa; 187300e6dbe6SBarry Smith MPI_Comm comm = mat->comm; 187400e6dbe6SBarry Smith Mat_SeqAIJ *aij; 18757e2c5f70SBarry Smith 1876a0ff6018SBarry Smith 1877a0ff6018SBarry Smith PetscFunctionBegin; 18781dab6e02SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 18791dab6e02SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 188000e6dbe6SBarry Smith 1881fee21e36SBarry Smith if (call == MAT_REUSE_MATRIX) { 1882fee21e36SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 188329bbc08cSBarry Smith if (!Mreuse) SETERRQ(1,"Submatrix passed in was not used before, cannot reuse"); 1884fee21e36SBarry Smith local = &Mreuse; 1885fee21e36SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 1886fee21e36SBarry Smith } else { 1887a0ff6018SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 1888fee21e36SBarry Smith Mreuse = *local; 1889606d414cSSatish Balay ierr = PetscFree(local);CHKERRQ(ierr); 1890fee21e36SBarry Smith } 1891a0ff6018SBarry Smith 1892a0ff6018SBarry Smith /* 1893a0ff6018SBarry Smith m - number of local rows 1894a0ff6018SBarry Smith n - number of columns (same on all processors) 1895a0ff6018SBarry Smith rstart - first row in new global matrix generated 1896a0ff6018SBarry Smith */ 1897fee21e36SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 1898a0ff6018SBarry Smith if (call == MAT_INITIAL_MATRIX) { 1899fee21e36SBarry Smith aij = (Mat_SeqAIJ*)(Mreuse)->data; 190029bbc08cSBarry Smith if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,"No support for index shifted matrix"); 190100e6dbe6SBarry Smith ii = aij->i; 190200e6dbe6SBarry Smith jj = aij->j; 190300e6dbe6SBarry Smith 1904a0ff6018SBarry Smith /* 190500e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 190600e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 1907a0ff6018SBarry Smith */ 190800e6dbe6SBarry Smith 190900e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 19106a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 191100e6dbe6SBarry Smith nlocal = n/size + ((n % size) > rank); 19126a6a5d1dSBarry Smith } else { 19136a6a5d1dSBarry Smith nlocal = csize; 19146a6a5d1dSBarry Smith } 1915ca161407SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 191600e6dbe6SBarry Smith rstart = rend - nlocal; 19176a6a5d1dSBarry Smith if (rank == size - 1 && rend != n) { 191829bbc08cSBarry Smith SETERRQ(1,"Local column sizes do not add up to total number of columns"); 19196a6a5d1dSBarry Smith } 192000e6dbe6SBarry Smith 192100e6dbe6SBarry Smith /* next, compute all the lengths */ 1922b0a32e0cSBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(int),&dlens);CHKERRQ(ierr); 192300e6dbe6SBarry Smith olens = dlens + m; 192400e6dbe6SBarry Smith for (i=0; i<m; i++) { 192500e6dbe6SBarry Smith jend = ii[i+1] - ii[i]; 192600e6dbe6SBarry Smith olen = 0; 192700e6dbe6SBarry Smith dlen = 0; 192800e6dbe6SBarry Smith for (j=0; j<jend; j++) { 192900e6dbe6SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 193000e6dbe6SBarry Smith else dlen++; 193100e6dbe6SBarry Smith jj++; 193200e6dbe6SBarry Smith } 193300e6dbe6SBarry Smith olens[i] = olen; 193400e6dbe6SBarry Smith dlens[i] = dlen; 193500e6dbe6SBarry Smith } 19362d207970SBarry Smith ierr = MatCreateMPIAIJ(comm,m,nlocal,PETSC_DECIDE,n,0,dlens,0,olens,&M);CHKERRQ(ierr); 1937606d414cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 1938a0ff6018SBarry Smith } else { 1939a0ff6018SBarry Smith int ml,nl; 1940a0ff6018SBarry Smith 1941a0ff6018SBarry Smith M = *newmat; 1942a0ff6018SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 194329bbc08cSBarry Smith if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 1944a0ff6018SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 1945c48de900SBarry Smith /* 1946c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 1947c48de900SBarry Smith rather than the slower MatSetValues(). 1948c48de900SBarry Smith */ 1949c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 1950c48de900SBarry Smith M->assembled = PETSC_FALSE; 1951a0ff6018SBarry Smith } 1952a0ff6018SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 1953fee21e36SBarry Smith aij = (Mat_SeqAIJ*)(Mreuse)->data; 195429bbc08cSBarry Smith if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,"No support for index shifted matrix"); 195500e6dbe6SBarry Smith ii = aij->i; 195600e6dbe6SBarry Smith jj = aij->j; 195700e6dbe6SBarry Smith aa = aij->a; 1958a0ff6018SBarry Smith for (i=0; i<m; i++) { 1959a0ff6018SBarry Smith row = rstart + i; 196000e6dbe6SBarry Smith nz = ii[i+1] - ii[i]; 196100e6dbe6SBarry Smith cwork = jj; jj += nz; 196200e6dbe6SBarry Smith vwork = aa; aa += nz; 19638c638d02SBarry Smith ierr = MatSetValues_MPIAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 1964a0ff6018SBarry Smith } 1965a0ff6018SBarry Smith 1966a0ff6018SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1967a0ff6018SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1968a0ff6018SBarry Smith *newmat = M; 1969fee21e36SBarry Smith 1970fee21e36SBarry Smith /* save submatrix used in processor for next request */ 1971fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 1972fee21e36SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 1973fee21e36SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 1974fee21e36SBarry Smith } 1975fee21e36SBarry Smith 1976a0ff6018SBarry Smith PetscFunctionReturn(0); 1977a0ff6018SBarry Smith } 1978273d9f13SBarry Smith 19794a2ae208SSatish Balay #undef __FUNCT__ 19804a2ae208SSatish Balay #define __FUNCT__ "MatMPIAIJSetPreallocation" 1981273d9f13SBarry Smith /*@C 1982273d9f13SBarry Smith MatMPIAIJSetPreallocation - Creates a sparse parallel matrix in AIJ format 1983273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 1984273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 1985273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 1986273d9f13SBarry Smith performance can be increased by more than a factor of 50. 1987273d9f13SBarry Smith 1988273d9f13SBarry Smith Collective on MPI_Comm 1989273d9f13SBarry Smith 1990273d9f13SBarry Smith Input Parameters: 1991273d9f13SBarry Smith + A - the matrix 1992273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 1993273d9f13SBarry Smith (same value is used for all local rows) 1994273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 1995273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 1996273d9f13SBarry Smith or PETSC_NULL, if d_nz is used to specify the nonzero structure. 1997273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 1998273d9f13SBarry Smith You must leave room for the diagonal entry even if it is zero. 1999273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 2000273d9f13SBarry Smith submatrix (same value is used for all local rows). 2001273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 2002273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 2003273d9f13SBarry Smith each row) or PETSC_NULL, if o_nz is used to specify the nonzero 2004273d9f13SBarry Smith structure. The size of this array is equal to the number 2005273d9f13SBarry Smith of local rows, i.e 'm'. 2006273d9f13SBarry Smith 2007273d9f13SBarry Smith The AIJ format (also called the Yale sparse matrix format or 2008273d9f13SBarry Smith compressed row storage), is fully compatible with standard Fortran 77 2009273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 2010273d9f13SBarry Smith either one (as in Fortran) or zero. See the users manual for details. 2011273d9f13SBarry Smith 2012273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 2013273d9f13SBarry Smith (possibly both). 2014273d9f13SBarry Smith 2015273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 2016273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 2017273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 2018273d9f13SBarry Smith 2019273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 2020273d9f13SBarry Smith as the submatrix which is obtained by extraction the part corresponding 2021273d9f13SBarry Smith to the rows r1-r2 and columns r1-r2 of the global matrix, where r1 is the 2022273d9f13SBarry Smith first row that belongs to the processor, and r2 is the last row belonging 2023273d9f13SBarry Smith to the this processor. This is a square mxm matrix. The remaining portion 2024273d9f13SBarry Smith of the local submatrix (mxN) constitute the OFF-DIAGONAL portion. 2025273d9f13SBarry Smith 2026273d9f13SBarry Smith If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored. 2027273d9f13SBarry Smith 2028273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 2029273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 2030273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 2031273d9f13SBarry Smith 2032273d9f13SBarry Smith Options Database Keys: 2033273d9f13SBarry Smith + -mat_aij_no_inode - Do not use inodes 2034273d9f13SBarry Smith . -mat_aij_inode_limit <limit> - Sets inode limit (max limit=5) 2035273d9f13SBarry Smith - -mat_aij_oneindex - Internally use indexing starting at 1 2036273d9f13SBarry Smith rather than 0. Note that when calling MatSetValues(), 2037273d9f13SBarry Smith the user still MUST index entries starting at 0! 2038273d9f13SBarry Smith 2039273d9f13SBarry Smith Example usage: 2040273d9f13SBarry Smith 2041273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 2042273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 2043273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 2044273d9f13SBarry Smith as follows: 2045273d9f13SBarry Smith 2046273d9f13SBarry Smith .vb 2047273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 2048273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 2049273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 2050273d9f13SBarry Smith ------------------------------------- 2051273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 2052273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 2053273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 2054273d9f13SBarry Smith ------------------------------------- 2055273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 2056273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 2057273d9f13SBarry Smith .ve 2058273d9f13SBarry Smith 2059273d9f13SBarry Smith This can be represented as a collection of submatrices as: 2060273d9f13SBarry Smith 2061273d9f13SBarry Smith .vb 2062273d9f13SBarry Smith A B C 2063273d9f13SBarry Smith D E F 2064273d9f13SBarry Smith G H I 2065273d9f13SBarry Smith .ve 2066273d9f13SBarry Smith 2067273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 2068273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 2069273d9f13SBarry Smith 2070273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 2071273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 2072273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 2073273d9f13SBarry Smith 2074273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 2075273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 2076273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 2077273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 2078273d9f13SBarry Smith part as SeqAIJ matrices. for eg: proc1 will store [E] as a SeqAIJ 2079273d9f13SBarry Smith matrix, ans [DF] as another SeqAIJ matrix. 2080273d9f13SBarry Smith 2081273d9f13SBarry Smith When d_nz, o_nz parameters are specified, d_nz storage elements are 2082273d9f13SBarry Smith allocated for every row of the local diagonal submatrix, and o_nz 2083273d9f13SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 2084273d9f13SBarry Smith One way to choose d_nz and o_nz is to use the max nonzerors per local 2085273d9f13SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 2086273d9f13SBarry Smith In this case, the values of d_nz,o_nz are: 2087273d9f13SBarry Smith .vb 2088273d9f13SBarry Smith proc0 : dnz = 2, o_nz = 2 2089273d9f13SBarry Smith proc1 : dnz = 3, o_nz = 2 2090273d9f13SBarry Smith proc2 : dnz = 1, o_nz = 4 2091273d9f13SBarry Smith .ve 2092273d9f13SBarry Smith We are allocating m*(d_nz+o_nz) storage locations for every proc. This 2093273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 2094273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 2095273d9f13SBarry Smith 34 values. 2096273d9f13SBarry Smith 2097273d9f13SBarry Smith When d_nnz, o_nnz parameters are specified, the storage is specified 2098273d9f13SBarry Smith for every row, coresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 2099273d9f13SBarry Smith In the above case the values for d_nnz,o_nnz are: 2100273d9f13SBarry Smith .vb 2101273d9f13SBarry Smith proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2] 2102273d9f13SBarry Smith proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1] 2103273d9f13SBarry Smith proc2: d_nnz = [1,1] and o_nnz = [4,4] 2104273d9f13SBarry Smith .ve 2105273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 2106273d9f13SBarry Smith hence pre-allocation is perfect. 2107273d9f13SBarry Smith 2108273d9f13SBarry Smith Level: intermediate 2109273d9f13SBarry Smith 2110273d9f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2111273d9f13SBarry Smith 2112273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues() 2113273d9f13SBarry Smith @*/ 2114273d9f13SBarry Smith int MatMPIAIJSetPreallocation(Mat B,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 2115273d9f13SBarry Smith { 2116273d9f13SBarry Smith Mat_MPIAIJ *b; 2117273d9f13SBarry Smith int ierr,i; 2118273d9f13SBarry Smith PetscTruth flg2; 2119273d9f13SBarry Smith 2120273d9f13SBarry Smith PetscFunctionBegin; 2121273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPIAIJ,&flg2);CHKERRQ(ierr); 2122273d9f13SBarry Smith if (!flg2) PetscFunctionReturn(0); 2123273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 2124435da068SBarry Smith if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2125435da068SBarry Smith if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 2126435da068SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 2127435da068SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 2128273d9f13SBarry Smith if (d_nnz) { 2129273d9f13SBarry Smith for (i=0; i<B->m; i++) { 2130273d9f13SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %d value %d",i,d_nnz[i]); 2131273d9f13SBarry Smith } 2132273d9f13SBarry Smith } 2133273d9f13SBarry Smith if (o_nnz) { 2134273d9f13SBarry Smith for (i=0; i<B->m; i++) { 2135273d9f13SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %d value %d",i,o_nnz[i]); 2136273d9f13SBarry Smith } 2137273d9f13SBarry Smith } 2138273d9f13SBarry Smith b = (Mat_MPIAIJ*)B->data; 2139273d9f13SBarry Smith 2140273d9f13SBarry Smith ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,B->m,B->n,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 2141b0a32e0cSBarry Smith PetscLogObjectParent(B,b->A); 2142273d9f13SBarry Smith ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,B->m,B->N,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 2143b0a32e0cSBarry Smith PetscLogObjectParent(B,b->B); 2144273d9f13SBarry Smith 2145273d9f13SBarry Smith PetscFunctionReturn(0); 2146273d9f13SBarry Smith } 2147273d9f13SBarry Smith 21484a2ae208SSatish Balay #undef __FUNCT__ 21494a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIAIJ" 2150273d9f13SBarry Smith /*@C 2151273d9f13SBarry Smith MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format 2152273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 2153273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2154273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2155273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2156273d9f13SBarry Smith 2157273d9f13SBarry Smith Collective on MPI_Comm 2158273d9f13SBarry Smith 2159273d9f13SBarry Smith Input Parameters: 2160273d9f13SBarry Smith + comm - MPI communicator 2161273d9f13SBarry Smith . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2162273d9f13SBarry Smith This value should be the same as the local size used in creating the 2163273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 2164273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 2165273d9f13SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 2166273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 2167273d9f13SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2168273d9f13SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 2169273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 2170273d9f13SBarry Smith (same value is used for all local rows) 2171273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 2172273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 2173273d9f13SBarry Smith or PETSC_NULL, if d_nz is used to specify the nonzero structure. 2174273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 2175273d9f13SBarry Smith You must leave room for the diagonal entry even if it is zero. 2176273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 2177273d9f13SBarry Smith submatrix (same value is used for all local rows). 2178273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 2179273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 2180273d9f13SBarry Smith each row) or PETSC_NULL, if o_nz is used to specify the nonzero 2181273d9f13SBarry Smith structure. The size of this array is equal to the number 2182273d9f13SBarry Smith of local rows, i.e 'm'. 2183273d9f13SBarry Smith 2184273d9f13SBarry Smith Output Parameter: 2185273d9f13SBarry Smith . A - the matrix 2186273d9f13SBarry Smith 2187273d9f13SBarry Smith Notes: 2188273d9f13SBarry Smith m,n,M,N parameters specify the size of the matrix, and its partitioning across 2189273d9f13SBarry Smith processors, while d_nz,d_nnz,o_nz,o_nnz parameters specify the approximate 2190273d9f13SBarry Smith storage requirements for this matrix. 2191273d9f13SBarry Smith 2192273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one 2193273d9f13SBarry Smith processor than it must be used on all processors that share the object for 2194273d9f13SBarry Smith that argument. 2195273d9f13SBarry Smith 2196273d9f13SBarry Smith The AIJ format (also called the Yale sparse matrix format or 2197273d9f13SBarry Smith compressed row storage), is fully compatible with standard Fortran 77 2198273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 2199273d9f13SBarry Smith either one (as in Fortran) or zero. See the users manual for details. 2200273d9f13SBarry Smith 2201273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 2202273d9f13SBarry Smith (possibly both). 2203273d9f13SBarry Smith 2204273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 2205273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 2206273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 2207273d9f13SBarry Smith 2208273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 2209273d9f13SBarry Smith as the submatrix which is obtained by extraction the part corresponding 2210273d9f13SBarry Smith to the rows r1-r2 and columns r1-r2 of the global matrix, where r1 is the 2211273d9f13SBarry Smith first row that belongs to the processor, and r2 is the last row belonging 2212273d9f13SBarry Smith to the this processor. This is a square mxm matrix. The remaining portion 2213273d9f13SBarry Smith of the local submatrix (mxN) constitute the OFF-DIAGONAL portion. 2214273d9f13SBarry Smith 2215273d9f13SBarry Smith If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored. 2216273d9f13SBarry Smith 2217273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 2218273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 2219273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 2220273d9f13SBarry Smith 2221273d9f13SBarry Smith Options Database Keys: 2222273d9f13SBarry Smith + -mat_aij_no_inode - Do not use inodes 2223273d9f13SBarry Smith . -mat_aij_inode_limit <limit> - Sets inode limit (max limit=5) 2224273d9f13SBarry Smith - -mat_aij_oneindex - Internally use indexing starting at 1 2225273d9f13SBarry Smith rather than 0. Note that when calling MatSetValues(), 2226273d9f13SBarry Smith the user still MUST index entries starting at 0! 2227273d9f13SBarry Smith 2228273d9f13SBarry Smith 2229273d9f13SBarry Smith Example usage: 2230273d9f13SBarry Smith 2231273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 2232273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 2233273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 2234273d9f13SBarry Smith as follows: 2235273d9f13SBarry Smith 2236273d9f13SBarry Smith .vb 2237273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 2238273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 2239273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 2240273d9f13SBarry Smith ------------------------------------- 2241273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 2242273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 2243273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 2244273d9f13SBarry Smith ------------------------------------- 2245273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 2246273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 2247273d9f13SBarry Smith .ve 2248273d9f13SBarry Smith 2249273d9f13SBarry Smith This can be represented as a collection of submatrices as: 2250273d9f13SBarry Smith 2251273d9f13SBarry Smith .vb 2252273d9f13SBarry Smith A B C 2253273d9f13SBarry Smith D E F 2254273d9f13SBarry Smith G H I 2255273d9f13SBarry Smith .ve 2256273d9f13SBarry Smith 2257273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 2258273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 2259273d9f13SBarry Smith 2260273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 2261273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 2262273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 2263273d9f13SBarry Smith 2264273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 2265273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 2266273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 2267273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 2268273d9f13SBarry Smith part as SeqAIJ matrices. for eg: proc1 will store [E] as a SeqAIJ 2269273d9f13SBarry Smith matrix, ans [DF] as another SeqAIJ matrix. 2270273d9f13SBarry Smith 2271273d9f13SBarry Smith When d_nz, o_nz parameters are specified, d_nz storage elements are 2272273d9f13SBarry Smith allocated for every row of the local diagonal submatrix, and o_nz 2273273d9f13SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 2274273d9f13SBarry Smith One way to choose d_nz and o_nz is to use the max nonzerors per local 2275273d9f13SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 2276273d9f13SBarry Smith In this case, the values of d_nz,o_nz are: 2277273d9f13SBarry Smith .vb 2278273d9f13SBarry Smith proc0 : dnz = 2, o_nz = 2 2279273d9f13SBarry Smith proc1 : dnz = 3, o_nz = 2 2280273d9f13SBarry Smith proc2 : dnz = 1, o_nz = 4 2281273d9f13SBarry Smith .ve 2282273d9f13SBarry Smith We are allocating m*(d_nz+o_nz) storage locations for every proc. This 2283273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 2284273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 2285273d9f13SBarry Smith 34 values. 2286273d9f13SBarry Smith 2287273d9f13SBarry Smith When d_nnz, o_nnz parameters are specified, the storage is specified 2288273d9f13SBarry Smith for every row, coresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 2289273d9f13SBarry Smith In the above case the values for d_nnz,o_nnz are: 2290273d9f13SBarry Smith .vb 2291273d9f13SBarry Smith proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2] 2292273d9f13SBarry Smith proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1] 2293273d9f13SBarry Smith proc2: d_nnz = [1,1] and o_nnz = [4,4] 2294273d9f13SBarry Smith .ve 2295273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 2296273d9f13SBarry Smith hence pre-allocation is perfect. 2297273d9f13SBarry Smith 2298273d9f13SBarry Smith Level: intermediate 2299273d9f13SBarry Smith 2300273d9f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2301273d9f13SBarry Smith 2302273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues() 2303273d9f13SBarry Smith @*/ 2304273d9f13SBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 2305273d9f13SBarry Smith { 2306273d9f13SBarry Smith int ierr,size; 2307273d9f13SBarry Smith 2308273d9f13SBarry Smith PetscFunctionBegin; 2309273d9f13SBarry Smith ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2310273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2311273d9f13SBarry Smith if (size > 1) { 2312273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIAIJ);CHKERRQ(ierr); 2313273d9f13SBarry Smith ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2314273d9f13SBarry Smith } else { 2315273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQAIJ);CHKERRQ(ierr); 2316273d9f13SBarry Smith ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr); 2317273d9f13SBarry Smith } 2318273d9f13SBarry Smith PetscFunctionReturn(0); 2319273d9f13SBarry Smith } 2320195d93cdSBarry Smith 23214a2ae208SSatish Balay #undef __FUNCT__ 23224a2ae208SSatish Balay #define __FUNCT__ "MatMPIAIJGetSeqAIJ" 2323195d93cdSBarry Smith int MatMPIAIJGetSeqAIJ(Mat A,Mat *Ad,Mat *Ao,int **colmap) 2324195d93cdSBarry Smith { 2325195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2326195d93cdSBarry Smith PetscFunctionBegin; 2327195d93cdSBarry Smith *Ad = a->A; 2328195d93cdSBarry Smith *Ao = a->B; 2329195d93cdSBarry Smith *colmap = a->garray; 2330195d93cdSBarry Smith PetscFunctionReturn(0); 2331195d93cdSBarry Smith } 2332a2243be0SBarry Smith 2333a2243be0SBarry Smith #undef __FUNCT__ 2334a2243be0SBarry Smith #define __FUNCT__ "MatSetColoring_MPIAIJ" 2335a2243be0SBarry Smith int MatSetColoring_MPIAIJ(Mat A,ISColoring coloring) 2336a2243be0SBarry Smith { 2337a2243be0SBarry Smith int ierr; 2338a2243be0SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 2339a2243be0SBarry Smith 2340a2243be0SBarry Smith PetscFunctionBegin; 2341a2243be0SBarry Smith if (coloring->ctype == IS_COLORING_LOCAL) { 2342a2243be0SBarry Smith int *allcolors,*colors,i; 2343a2243be0SBarry Smith ISColoring ocoloring; 2344a2243be0SBarry Smith 2345a2243be0SBarry Smith /* set coloring for diagonal portion */ 2346a2243be0SBarry Smith ierr = MatSetColoring_SeqAIJ(a->A,coloring);CHKERRQ(ierr); 2347a2243be0SBarry Smith 2348a2243be0SBarry Smith /* set coloring for off-diagonal portion */ 2349a2243be0SBarry Smith ierr = ISAllGatherIndices(A->comm,coloring->n,coloring->colors,PETSC_NULL,&allcolors);CHKERRQ(ierr); 2350a2243be0SBarry Smith ierr = PetscMalloc((a->B->n+1)*sizeof(int),&colors);CHKERRQ(ierr); 2351a2243be0SBarry Smith for (i=0; i<a->B->n; i++) { 2352a2243be0SBarry Smith colors[i] = allcolors[a->garray[i]]; 2353a2243be0SBarry Smith } 2354a2243be0SBarry Smith ierr = PetscFree(allcolors);CHKERRQ(ierr); 2355a2243be0SBarry Smith ierr = ISColoringCreate(MPI_COMM_SELF,a->B->n,colors,&ocoloring);CHKERRQ(ierr); 2356a2243be0SBarry Smith ierr = MatSetColoring_SeqAIJ(a->B,ocoloring);CHKERRQ(ierr); 2357a2243be0SBarry Smith ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr); 2358a2243be0SBarry Smith } else if (coloring->ctype == IS_COLORING_GHOSTED) { 2359a2243be0SBarry Smith int *colors,i,*larray; 2360a2243be0SBarry Smith ISColoring ocoloring; 2361a2243be0SBarry Smith 2362a2243be0SBarry Smith /* set coloring for diagonal portion */ 2363a2243be0SBarry Smith ierr = PetscMalloc((a->A->n+1)*sizeof(int),&larray);CHKERRQ(ierr); 2364a2243be0SBarry Smith for (i=0; i<a->A->n; i++) { 2365a2243be0SBarry Smith larray[i] = i + a->cstart; 2366a2243be0SBarry Smith } 2367a2243be0SBarry Smith ierr = ISGlobalToLocalMappingApply(A->mapping,IS_GTOLM_MASK,a->A->n,larray,PETSC_NULL,larray);CHKERRQ(ierr); 2368a2243be0SBarry Smith ierr = PetscMalloc((a->A->n+1)*sizeof(int),&colors);CHKERRQ(ierr); 2369a2243be0SBarry Smith for (i=0; i<a->A->n; i++) { 2370a2243be0SBarry Smith colors[i] = coloring->colors[larray[i]]; 2371a2243be0SBarry Smith } 2372a2243be0SBarry Smith ierr = PetscFree(larray);CHKERRQ(ierr); 237312c595b3SBarry Smith ierr = ISColoringCreate(PETSC_COMM_SELF,a->A->n,colors,&ocoloring);CHKERRQ(ierr); 2374a2243be0SBarry Smith ierr = MatSetColoring_SeqAIJ(a->A,ocoloring);CHKERRQ(ierr); 2375a2243be0SBarry Smith ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr); 2376a2243be0SBarry Smith 2377a2243be0SBarry Smith /* set coloring for off-diagonal portion */ 2378a2243be0SBarry Smith ierr = PetscMalloc((a->B->n+1)*sizeof(int),&larray);CHKERRQ(ierr); 2379a2243be0SBarry Smith ierr = ISGlobalToLocalMappingApply(A->mapping,IS_GTOLM_MASK,a->B->n,a->garray,PETSC_NULL,larray);CHKERRQ(ierr); 2380a2243be0SBarry Smith ierr = PetscMalloc((a->B->n+1)*sizeof(int),&colors);CHKERRQ(ierr); 2381a2243be0SBarry Smith for (i=0; i<a->B->n; i++) { 2382a2243be0SBarry Smith colors[i] = coloring->colors[larray[i]]; 2383a2243be0SBarry Smith } 2384a2243be0SBarry Smith ierr = PetscFree(larray);CHKERRQ(ierr); 2385a2243be0SBarry Smith ierr = ISColoringCreate(MPI_COMM_SELF,a->B->n,colors,&ocoloring);CHKERRQ(ierr); 2386a2243be0SBarry Smith ierr = MatSetColoring_SeqAIJ(a->B,ocoloring);CHKERRQ(ierr); 2387a2243be0SBarry Smith ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr); 2388a2243be0SBarry Smith } else { 2389a2243be0SBarry Smith SETERRQ1(1,"No support ISColoringType %d",coloring->ctype); 2390a2243be0SBarry Smith } 2391a2243be0SBarry Smith 2392a2243be0SBarry Smith PetscFunctionReturn(0); 2393a2243be0SBarry Smith } 2394a2243be0SBarry Smith 2395a2243be0SBarry Smith #undef __FUNCT__ 2396779c1a83SBarry Smith #define __FUNCT__ "MatSetValuesAdic_MPIAIJ" 2397779c1a83SBarry Smith int MatSetValuesAdic_MPIAIJ(Mat A,void *advalues) 2398a2243be0SBarry Smith { 2399a2243be0SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 2400a2243be0SBarry Smith int ierr; 2401a2243be0SBarry Smith 2402a2243be0SBarry Smith PetscFunctionBegin; 2403779c1a83SBarry Smith ierr = MatSetValuesAdic_SeqAIJ(a->A,advalues);CHKERRQ(ierr); 2404779c1a83SBarry Smith ierr = MatSetValuesAdic_SeqAIJ(a->B,advalues);CHKERRQ(ierr); 2405779c1a83SBarry Smith PetscFunctionReturn(0); 2406779c1a83SBarry Smith } 2407779c1a83SBarry Smith 2408779c1a83SBarry Smith #undef __FUNCT__ 2409779c1a83SBarry Smith #define __FUNCT__ "MatSetValuesAdifor_MPIAIJ" 2410779c1a83SBarry Smith int MatSetValuesAdifor_MPIAIJ(Mat A,int nl,void *advalues) 2411779c1a83SBarry Smith { 2412779c1a83SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 2413779c1a83SBarry Smith int ierr; 2414779c1a83SBarry Smith 2415779c1a83SBarry Smith PetscFunctionBegin; 2416779c1a83SBarry Smith ierr = MatSetValuesAdifor_SeqAIJ(a->A,nl,advalues);CHKERRQ(ierr); 2417779c1a83SBarry Smith ierr = MatSetValuesAdifor_SeqAIJ(a->B,nl,advalues);CHKERRQ(ierr); 2418a2243be0SBarry Smith PetscFunctionReturn(0); 2419a2243be0SBarry Smith } 2420c5d6d63eSBarry Smith 2421c5d6d63eSBarry Smith #undef __FUNCT__ 2422c5d6d63eSBarry Smith #define __FUNCT__ "MatFileMerge" 2423c5d6d63eSBarry Smith /*@C 2424c5d6d63eSBarry Smith MatFileMerge - Saves a single large PETSc matrix by reading in 2425c5d6d63eSBarry Smith sequential matrices from each processor and concatinating them 2426c5d6d63eSBarry Smith together. 2427c5d6d63eSBarry Smith 2428c5d6d63eSBarry Smith Collective on MPI_Comm 2429c5d6d63eSBarry Smith 2430c5d6d63eSBarry Smith Input Parameters: 2431c5d6d63eSBarry Smith + comm - the communicators the individual files are on 2432c5d6d63eSBarry Smith . infile - name of input file 2433c5d6d63eSBarry Smith - outfile - name of output file 2434c5d6d63eSBarry Smith 2435c5d6d63eSBarry Smith Notes: The number of columns of the matrix in EACH of the seperate files 2436c5d6d63eSBarry Smith MUST be the same. 2437c5d6d63eSBarry Smith 2438c5d6d63eSBarry Smith The true name of the input files on each processor is obtained by 2439c5d6d63eSBarry Smith appending .rank onto the infile string; where rank is 0 up to one less 2440c5d6d63eSBarry Smith then the number of processors 2441c5d6d63eSBarry Smith @*/ 2442c5d6d63eSBarry Smith int MatFileMerge(MPI_Comm comm,char *infile,char *outfile) 2443c5d6d63eSBarry Smith { 2444c5d6d63eSBarry Smith int ierr,rank,len,m,n,i,rstart,*indx,nnz,I; 2445c5d6d63eSBarry Smith PetscViewer in,out; 2446c5d6d63eSBarry Smith char *name; 2447c5d6d63eSBarry Smith Mat A,B; 2448c5d6d63eSBarry Smith PetscScalar *values; 2449c5d6d63eSBarry Smith 2450c5d6d63eSBarry Smith PetscFunctionBegin; 2451c5d6d63eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2452c5d6d63eSBarry Smith ierr = PetscStrlen(infile,&len);CHKERRQ(ierr); 2453c5d6d63eSBarry Smith ierr = PetscMalloc((len+5)*sizeof(char),&name);CHKERRQ(ierr); 2454c5d6d63eSBarry Smith sprintf(name,"%s.%d",infile,rank); 2455c5d6d63eSBarry Smith ierr = PetscViewerBinaryOpen(PETSC_COMM_SELF,name,PETSC_BINARY_RDONLY,&in);CHKERRQ(ierr); 2456c5d6d63eSBarry Smith ierr = PetscFree(name); 2457c5d6d63eSBarry Smith ierr = MatLoad(in,MATSEQAIJ,&A);CHKERRQ(ierr); 2458c5d6d63eSBarry Smith ierr = PetscViewerDestroy(in);CHKERRQ(ierr); 2459c5d6d63eSBarry Smith 2460c5d6d63eSBarry Smith ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr); 2461c5d6d63eSBarry Smith ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,PETSC_DETERMINE,n,0,0,0,0,&B);CHKERRQ(ierr); 2462c5d6d63eSBarry Smith ierr = MatGetOwnershipRange(B,&rstart,0);CHKERRQ(ierr); 2463c5d6d63eSBarry Smith for (i=0;i<m;i++) { 2464c5d6d63eSBarry Smith ierr = MatGetRow(A,i,&nnz,&indx,&values);CHKERRQ(ierr); 2465c5d6d63eSBarry Smith I = i + rstart; 2466c5d6d63eSBarry Smith ierr = MatSetValues(B,1,&I,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 2467c5d6d63eSBarry Smith ierr = MatRestoreRow(A,i,&nnz,&indx,&values);CHKERRQ(ierr); 2468c5d6d63eSBarry Smith } 2469c5d6d63eSBarry Smith ierr = MatDestroy(A);CHKERRQ(ierr); 2470c5d6d63eSBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2471c5d6d63eSBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2472c5d6d63eSBarry Smith 2473c5d6d63eSBarry Smith ierr = PetscViewerBinaryOpen(comm,outfile,PETSC_BINARY_CREATE,&out);CHKERRQ(ierr); 2474c5d6d63eSBarry Smith ierr = MatView(B,out);CHKERRQ(ierr); 2475c5d6d63eSBarry Smith ierr = PetscViewerDestroy(out);CHKERRQ(ierr); 2476c5d6d63eSBarry Smith ierr = MatDestroy(B);CHKERRQ(ierr); 2477c5d6d63eSBarry Smith PetscFunctionReturn(0); 2478c5d6d63eSBarry Smith } 2479c5d6d63eSBarry Smith 2480c5d6d63eSBarry Smith #undef __FUNCT__ 2481c5d6d63eSBarry Smith #define __FUNCT__ "MatFileSplit" 2482c5d6d63eSBarry Smith int MatFileSplit(Mat A,char *outfile) 2483c5d6d63eSBarry Smith { 2484c5d6d63eSBarry Smith int ierr,rank,len,m,N,i,rstart,*indx,nnz; 2485c5d6d63eSBarry Smith PetscViewer out; 2486c5d6d63eSBarry Smith char *name; 2487c5d6d63eSBarry Smith Mat B; 2488c5d6d63eSBarry Smith PetscScalar *values; 2489c5d6d63eSBarry Smith 2490c5d6d63eSBarry Smith PetscFunctionBegin; 2491c5d6d63eSBarry Smith 2492c5d6d63eSBarry Smith ierr = MatGetLocalSize(A,&m,0);CHKERRQ(ierr); 2493c5d6d63eSBarry Smith ierr = MatGetSize(A,0,&N);CHKERRQ(ierr); 2494c5d6d63eSBarry Smith ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,m,N,0,0,&B);CHKERRQ(ierr); 2495c5d6d63eSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,0);CHKERRQ(ierr); 2496c5d6d63eSBarry Smith for (i=0;i<m;i++) { 2497c5d6d63eSBarry Smith ierr = MatGetRow(A,i+rstart,&nnz,&indx,&values);CHKERRQ(ierr); 2498c5d6d63eSBarry Smith ierr = MatSetValues(B,1,&i,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 2499c5d6d63eSBarry Smith ierr = MatRestoreRow(A,i+rstart,&nnz,&indx,&values);CHKERRQ(ierr); 2500c5d6d63eSBarry Smith } 2501c5d6d63eSBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2502c5d6d63eSBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2503c5d6d63eSBarry Smith 2504c5d6d63eSBarry Smith ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr); 2505c5d6d63eSBarry Smith ierr = PetscStrlen(outfile,&len);CHKERRQ(ierr); 2506c5d6d63eSBarry Smith ierr = PetscMalloc((len+5)*sizeof(char),&name);CHKERRQ(ierr); 2507c5d6d63eSBarry Smith sprintf(name,"%s.%d",outfile,rank); 2508c5d6d63eSBarry Smith ierr = PetscViewerBinaryOpen(PETSC_COMM_SELF,name,PETSC_BINARY_CREATE,&out);CHKERRQ(ierr); 2509c5d6d63eSBarry Smith ierr = PetscFree(name); 2510c5d6d63eSBarry Smith ierr = MatView(B,out);CHKERRQ(ierr); 2511c5d6d63eSBarry Smith ierr = PetscViewerDestroy(out);CHKERRQ(ierr); 2512c5d6d63eSBarry Smith ierr = MatDestroy(B);CHKERRQ(ierr); 2513c5d6d63eSBarry Smith PetscFunctionReturn(0); 2514c5d6d63eSBarry Smith } 2515