xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 456192e25527e6dfd94efe19f31bdabe85ed0893)
173f4d377SMatthew Knepley /*$Id: mpiaij.c,v 1.344 2001/08/10 03:30:48 bsmith Exp $*/
28a729477SBarry Smith 
370f55243SBarry Smith #include "src/mat/impls/aij/mpi/mpiaij.h"
4f5eb4b81SSatish Balay #include "src/vec/vecimpl.h"
5d9942c19SSatish Balay #include "src/inline/spops.h"
68a729477SBarry Smith 
7ca44d042SBarry Smith EXTERN int MatSetUpMultiply_MPIAIJ(Mat);
8ca44d042SBarry Smith EXTERN int DisAssemble_MPIAIJ(Mat);
987828ca2SBarry Smith EXTERN int MatSetValues_SeqAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode);
1087828ca2SBarry Smith EXTERN int MatGetRow_SeqAIJ(Mat,int,int*,int**,PetscScalar**);
1187828ca2SBarry Smith EXTERN int MatRestoreRow_SeqAIJ(Mat,int,int*,int**,PetscScalar**);
12ca44d042SBarry Smith EXTERN int MatPrintHelp_SeqAIJ(Mat);
13bc5ccf88SSatish Balay 
140f5bd95cSBarry Smith /*
150f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
169e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
170f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
180f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
190f5bd95cSBarry Smith has an order N integer array but is fast to acess.
209e25ed09SBarry Smith */
214a2ae208SSatish Balay #undef __FUNCT__
224a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIAIJ_Private"
230a198c4cSBarry Smith int CreateColmap_MPIAIJ_Private(Mat mat)
249e25ed09SBarry Smith {
2544a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
26273d9f13SBarry Smith   int        n = aij->B->n,i,ierr;
27dbb450caSBarry Smith 
283a40ed3dSBarry Smith   PetscFunctionBegin;
29aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
30273d9f13SBarry Smith   ierr = PetscTableCreate(n,&aij->colmap);CHKERRQ(ierr);
31b1fc9764SSatish Balay   for (i=0; i<n; i++){
320f5bd95cSBarry Smith     ierr = PetscTableAdd(aij->colmap,aij->garray[i]+1,i+1);CHKERRQ(ierr);
33b1fc9764SSatish Balay   }
34b1fc9764SSatish Balay #else
35b0a32e0cSBarry Smith   ierr = PetscMalloc((mat->N+1)*sizeof(int),&aij->colmap);CHKERRQ(ierr);
36b0a32e0cSBarry Smith   PetscLogObjectMemory(mat,mat->N*sizeof(int));
37273d9f13SBarry Smith   ierr = PetscMemzero(aij->colmap,mat->N*sizeof(int));CHKERRQ(ierr);
38905e6a2fSBarry Smith   for (i=0; i<n; i++) aij->colmap[aij->garray[i]] = i+1;
39b1fc9764SSatish Balay #endif
403a40ed3dSBarry Smith   PetscFunctionReturn(0);
419e25ed09SBarry Smith }
429e25ed09SBarry Smith 
430520107fSSatish Balay #define CHUNKSIZE   15
4430770e4dSSatish Balay #define MatSetValues_SeqAIJ_A_Private(row,col,value,addv) \
450520107fSSatish Balay { \
460520107fSSatish Balay  \
470520107fSSatish Balay     rp   = aj + ai[row] + shift; ap = aa + ai[row] + shift; \
4830770e4dSSatish Balay     rmax = aimax[row]; nrow = ailen[row];  \
49f5e9677aSSatish Balay     col1 = col - shift; \
50f5e9677aSSatish Balay      \
51ba4e3ef2SSatish Balay     low = 0; high = nrow; \
52ba4e3ef2SSatish Balay     while (high-low > 5) { \
53ba4e3ef2SSatish Balay       t = (low+high)/2; \
54ba4e3ef2SSatish Balay       if (rp[t] > col) high = t; \
55ba4e3ef2SSatish Balay       else             low  = t; \
56ba4e3ef2SSatish Balay     } \
572335bdd2SSatish Balay       for (_i=low; _i<high; _i++) { \
58f5e9677aSSatish Balay         if (rp[_i] > col1) break; \
59f5e9677aSSatish Balay         if (rp[_i] == col1) { \
600520107fSSatish Balay           if (addv == ADD_VALUES) ap[_i] += value;   \
610520107fSSatish Balay           else                  ap[_i] = value; \
6230770e4dSSatish Balay           goto a_noinsert; \
630520107fSSatish Balay         } \
640520107fSSatish Balay       }  \
6589280ab3SLois Curfman McInnes       if (nonew == 1) goto a_noinsert; \
6629bbc08cSBarry Smith       else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
670520107fSSatish Balay       if (nrow >= rmax) { \
680520107fSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
69273d9f13SBarry Smith         int    new_nz = ai[am] + CHUNKSIZE,len,*new_i,*new_j; \
7087828ca2SBarry Smith         PetscScalar *new_a; \
710520107fSSatish Balay  \
7229bbc08cSBarry Smith         if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
7389280ab3SLois Curfman McInnes  \
740520107fSSatish Balay         /* malloc new storage space */ \
7587828ca2SBarry Smith         len     = new_nz*(sizeof(int)+sizeof(PetscScalar))+(am+1)*sizeof(int); \
76b0a32e0cSBarry Smith         ierr    = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
770520107fSSatish Balay         new_j   = (int*)(new_a + new_nz); \
780520107fSSatish Balay         new_i   = new_j + new_nz; \
790520107fSSatish Balay  \
800520107fSSatish Balay         /* copy over old data into new slots */ \
810520107fSSatish Balay         for (ii=0; ii<row+1; ii++) {new_i[ii] = ai[ii];} \
82273d9f13SBarry Smith         for (ii=row+1; ii<am+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
83549d3d68SSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[row]+nrow+shift)*sizeof(int));CHKERRQ(ierr); \
840520107fSSatish Balay         len = (new_nz - CHUNKSIZE - ai[row] - nrow - shift); \
85549d3d68SSatish Balay         ierr = PetscMemcpy(new_j+ai[row]+shift+nrow+CHUNKSIZE,aj+ai[row]+shift+nrow, \
86549d3d68SSatish Balay                                                            len*sizeof(int));CHKERRQ(ierr); \
8787828ca2SBarry Smith         ierr = PetscMemcpy(new_a,aa,(ai[row]+nrow+shift)*sizeof(PetscScalar));CHKERRQ(ierr); \
88549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+ai[row]+shift+nrow+CHUNKSIZE,aa+ai[row]+shift+nrow, \
8987828ca2SBarry Smith                                                            len*sizeof(PetscScalar));CHKERRQ(ierr);  \
900520107fSSatish Balay         /* free up old matrix storage */ \
91f5e9677aSSatish Balay  \
92606d414cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
93606d414cSSatish Balay         if (!a->singlemalloc) { \
94606d414cSSatish Balay            ierr = PetscFree(a->i);CHKERRQ(ierr); \
95606d414cSSatish Balay            ierr = PetscFree(a->j);CHKERRQ(ierr); \
96606d414cSSatish Balay         } \
970520107fSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
987c922b88SBarry Smith         a->singlemalloc = PETSC_TRUE; \
990520107fSSatish Balay  \
1000520107fSSatish Balay         rp   = aj + ai[row] + shift; ap = aa + ai[row] + shift; \
10130770e4dSSatish Balay         rmax = aimax[row] = aimax[row] + CHUNKSIZE; \
10287828ca2SBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + sizeof(PetscScalar))); \
1030520107fSSatish Balay         a->maxnz += CHUNKSIZE; \
1040520107fSSatish Balay         a->reallocs++; \
1050520107fSSatish Balay       } \
1060520107fSSatish Balay       N = nrow++ - 1; a->nz++; \
1070520107fSSatish Balay       /* shift up all the later entries in this row */ \
1080520107fSSatish Balay       for (ii=N; ii>=_i; ii--) { \
1090520107fSSatish Balay         rp[ii+1] = rp[ii]; \
1100520107fSSatish Balay         ap[ii+1] = ap[ii]; \
1110520107fSSatish Balay       } \
112f5e9677aSSatish Balay       rp[_i] = col1;  \
1130520107fSSatish Balay       ap[_i] = value;  \
11430770e4dSSatish Balay       a_noinsert: ; \
1150520107fSSatish Balay       ailen[row] = nrow; \
1160520107fSSatish Balay }
1170a198c4cSBarry Smith 
11830770e4dSSatish Balay #define MatSetValues_SeqAIJ_B_Private(row,col,value,addv) \
11930770e4dSSatish Balay { \
12030770e4dSSatish Balay  \
12130770e4dSSatish Balay     rp   = bj + bi[row] + shift; ap = ba + bi[row] + shift; \
12230770e4dSSatish Balay     rmax = bimax[row]; nrow = bilen[row];  \
12330770e4dSSatish Balay     col1 = col - shift; \
12430770e4dSSatish Balay      \
125ba4e3ef2SSatish Balay     low = 0; high = nrow; \
126ba4e3ef2SSatish Balay     while (high-low > 5) { \
127ba4e3ef2SSatish Balay       t = (low+high)/2; \
128ba4e3ef2SSatish Balay       if (rp[t] > col) high = t; \
129ba4e3ef2SSatish Balay       else             low  = t; \
130ba4e3ef2SSatish Balay     } \
1312335bdd2SSatish Balay        for (_i=low; _i<high; _i++) { \
13230770e4dSSatish Balay         if (rp[_i] > col1) break; \
13330770e4dSSatish Balay         if (rp[_i] == col1) { \
13430770e4dSSatish Balay           if (addv == ADD_VALUES) ap[_i] += value;   \
13530770e4dSSatish Balay           else                  ap[_i] = value; \
13630770e4dSSatish Balay           goto b_noinsert; \
13730770e4dSSatish Balay         } \
13830770e4dSSatish Balay       }  \
13989280ab3SLois Curfman McInnes       if (nonew == 1) goto b_noinsert; \
14029bbc08cSBarry Smith       else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
14130770e4dSSatish Balay       if (nrow >= rmax) { \
14230770e4dSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
143273d9f13SBarry Smith         int    new_nz = bi[bm] + CHUNKSIZE,len,*new_i,*new_j; \
14487828ca2SBarry Smith         PetscScalar *new_a; \
14530770e4dSSatish Balay  \
14629bbc08cSBarry Smith         if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
14789280ab3SLois Curfman McInnes  \
14830770e4dSSatish Balay         /* malloc new storage space */ \
14987828ca2SBarry Smith         len     = new_nz*(sizeof(int)+sizeof(PetscScalar))+(bm+1)*sizeof(int); \
150b0a32e0cSBarry Smith         ierr    = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
15130770e4dSSatish Balay         new_j   = (int*)(new_a + new_nz); \
15230770e4dSSatish Balay         new_i   = new_j + new_nz; \
15330770e4dSSatish Balay  \
15430770e4dSSatish Balay         /* copy over old data into new slots */ \
15530770e4dSSatish Balay         for (ii=0; ii<row+1; ii++) {new_i[ii] = bi[ii];} \
156273d9f13SBarry Smith         for (ii=row+1; ii<bm+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
157549d3d68SSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[row]+nrow+shift)*sizeof(int));CHKERRQ(ierr); \
15830770e4dSSatish Balay         len = (new_nz - CHUNKSIZE - bi[row] - nrow - shift); \
159549d3d68SSatish Balay         ierr = PetscMemcpy(new_j+bi[row]+shift+nrow+CHUNKSIZE,bj+bi[row]+shift+nrow, \
160549d3d68SSatish Balay                                                            len*sizeof(int));CHKERRQ(ierr); \
16187828ca2SBarry Smith         ierr = PetscMemcpy(new_a,ba,(bi[row]+nrow+shift)*sizeof(PetscScalar));CHKERRQ(ierr); \
162549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+bi[row]+shift+nrow+CHUNKSIZE,ba+bi[row]+shift+nrow, \
16387828ca2SBarry Smith                                                            len*sizeof(PetscScalar));CHKERRQ(ierr);  \
16430770e4dSSatish Balay         /* free up old matrix storage */ \
16530770e4dSSatish Balay  \
166606d414cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
167606d414cSSatish Balay         if (!b->singlemalloc) { \
168606d414cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
169606d414cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
170606d414cSSatish Balay         } \
17174c639caSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
1727c922b88SBarry Smith         b->singlemalloc = PETSC_TRUE; \
17330770e4dSSatish Balay  \
17430770e4dSSatish Balay         rp   = bj + bi[row] + shift; ap = ba + bi[row] + shift; \
17530770e4dSSatish Balay         rmax = bimax[row] = bimax[row] + CHUNKSIZE; \
17687828ca2SBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + sizeof(PetscScalar))); \
17774c639caSSatish Balay         b->maxnz += CHUNKSIZE; \
17874c639caSSatish Balay         b->reallocs++; \
17930770e4dSSatish Balay       } \
18074c639caSSatish Balay       N = nrow++ - 1; b->nz++; \
18130770e4dSSatish Balay       /* shift up all the later entries in this row */ \
18230770e4dSSatish Balay       for (ii=N; ii>=_i; ii--) { \
18330770e4dSSatish Balay         rp[ii+1] = rp[ii]; \
18430770e4dSSatish Balay         ap[ii+1] = ap[ii]; \
18530770e4dSSatish Balay       } \
18630770e4dSSatish Balay       rp[_i] = col1;  \
18730770e4dSSatish Balay       ap[_i] = value;  \
18830770e4dSSatish Balay       b_noinsert: ; \
18930770e4dSSatish Balay       bilen[row] = nrow; \
19030770e4dSSatish Balay }
19130770e4dSSatish Balay 
1924a2ae208SSatish Balay #undef __FUNCT__
1934a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIAIJ"
19487828ca2SBarry Smith int MatSetValues_MPIAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
1958a729477SBarry Smith {
19644a69424SLois Curfman McInnes   Mat_MPIAIJ   *aij = (Mat_MPIAIJ*)mat->data;
19787828ca2SBarry Smith   PetscScalar  value;
1981eb62cbbSBarry Smith   int          ierr,i,j,rstart = aij->rstart,rend = aij->rend;
1991eb62cbbSBarry Smith   int          cstart = aij->cstart,cend = aij->cend,row,col;
200273d9f13SBarry Smith   PetscTruth   roworiented = aij->roworiented;
2018a729477SBarry Smith 
2020520107fSSatish Balay   /* Some Variables required in the macro */
2034ee7247eSSatish Balay   Mat          A = aij->A;
2044ee7247eSSatish Balay   Mat_SeqAIJ   *a = (Mat_SeqAIJ*)A->data;
20530770e4dSSatish Balay   int          *aimax = a->imax,*ai = a->i,*ailen = a->ilen,*aj = a->j;
20687828ca2SBarry Smith   PetscScalar  *aa = a->a;
207329f5518SBarry Smith   PetscTruth   ignorezeroentries = (((a->ignorezeroentries)&&(addv==ADD_VALUES))?PETSC_TRUE:PETSC_FALSE);
20830770e4dSSatish Balay   Mat          B = aij->B;
20930770e4dSSatish Balay   Mat_SeqAIJ   *b = (Mat_SeqAIJ*)B->data;
210273d9f13SBarry Smith   int          *bimax = b->imax,*bi = b->i,*bilen = b->ilen,*bj = b->j,bm = aij->B->m,am = aij->A->m;
21187828ca2SBarry Smith   PetscScalar  *ba = b->a;
21230770e4dSSatish Balay 
213ba4e3ef2SSatish Balay   int          *rp,ii,nrow,_i,rmax,N,col1,low,high,t;
21430770e4dSSatish Balay   int          nonew = a->nonew,shift = a->indexshift;
21587828ca2SBarry Smith   PetscScalar  *ap;
2164ee7247eSSatish Balay 
2173a40ed3dSBarry Smith   PetscFunctionBegin;
2188a729477SBarry Smith   for (i=0; i<m; i++) {
2195ef9f2a5SBarry Smith     if (im[i] < 0) continue;
220aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
221273d9f13SBarry Smith     if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
2220a198c4cSBarry Smith #endif
2234b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
2244b0e389bSBarry Smith       row = im[i] - rstart;
2251eb62cbbSBarry Smith       for (j=0; j<n; j++) {
2264b0e389bSBarry Smith         if (in[j] >= cstart && in[j] < cend){
2274b0e389bSBarry Smith           col = in[j] - cstart;
2284b0e389bSBarry Smith           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
229329f5518SBarry Smith           if (ignorezeroentries && value == 0.0) continue;
23030770e4dSSatish Balay           MatSetValues_SeqAIJ_A_Private(row,col,value,addv);
2310520107fSSatish Balay           /* ierr = MatSetValues_SeqAIJ(aij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
232273d9f13SBarry Smith         } else if (in[j] < 0) continue;
233aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
234273d9f13SBarry Smith         else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");}
2350a198c4cSBarry Smith #endif
2361eb62cbbSBarry Smith         else {
237227d817aSBarry Smith           if (mat->was_assembled) {
238905e6a2fSBarry Smith             if (!aij->colmap) {
239905e6a2fSBarry Smith               ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr);
240905e6a2fSBarry Smith             }
241aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2420f5bd95cSBarry Smith             ierr = PetscTableFind(aij->colmap,in[j]+1,&col);CHKERRQ(ierr);
243fa46199cSSatish Balay 	    col--;
244b1fc9764SSatish Balay #else
245905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
246b1fc9764SSatish Balay #endif
247ec8511deSBarry Smith             if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
2482493cbb0SBarry Smith               ierr = DisAssemble_MPIAIJ(mat);CHKERRQ(ierr);
2494b0e389bSBarry Smith               col =  in[j];
2509bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
251f9508a3cSSatish Balay               B = aij->B;
252f9508a3cSSatish Balay               b = (Mat_SeqAIJ*)B->data;
253f9508a3cSSatish Balay               bimax = b->imax; bi = b->i; bilen = b->ilen; bj = b->j;
254f9508a3cSSatish Balay               ba = b->a;
255d6dfbf8fSBarry Smith             }
256c48de900SBarry Smith           } else col = in[j];
2574b0e389bSBarry Smith           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
258329f5518SBarry Smith           if (ignorezeroentries && value == 0.0) continue;
25930770e4dSSatish Balay           MatSetValues_SeqAIJ_B_Private(row,col,value,addv);
26030770e4dSSatish Balay           /* ierr = MatSetValues_SeqAIJ(aij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
2611eb62cbbSBarry Smith         }
2621eb62cbbSBarry Smith       }
2635ef9f2a5SBarry Smith     } else {
26490f02eecSBarry Smith       if (!aij->donotstash) {
265d36fbae8SSatish Balay         if (roworiented) {
266329f5518SBarry Smith           if (ignorezeroentries && v[i*n] == 0.0) continue;
2678798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
268d36fbae8SSatish Balay         } else {
269329f5518SBarry Smith           if (ignorezeroentries && v[i] == 0.0) continue;
2708798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
2714b0e389bSBarry Smith         }
2721eb62cbbSBarry Smith       }
2738a729477SBarry Smith     }
27490f02eecSBarry Smith   }
2753a40ed3dSBarry Smith   PetscFunctionReturn(0);
2768a729477SBarry Smith }
2778a729477SBarry Smith 
2784a2ae208SSatish Balay #undef __FUNCT__
2794a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIAIJ"
28087828ca2SBarry Smith int MatGetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v)
281b49de8d1SLois Curfman McInnes {
282b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
283b49de8d1SLois Curfman McInnes   int        ierr,i,j,rstart = aij->rstart,rend = aij->rend;
284b49de8d1SLois Curfman McInnes   int        cstart = aij->cstart,cend = aij->cend,row,col;
285b49de8d1SLois Curfman McInnes 
2863a40ed3dSBarry Smith   PetscFunctionBegin;
287b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
28829bbc08cSBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
289273d9f13SBarry Smith     if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
290b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
291b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
292b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
29329bbc08cSBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column");
294273d9f13SBarry Smith         if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
295b49de8d1SLois Curfman McInnes         if (idxn[j] >= cstart && idxn[j] < cend){
296b49de8d1SLois Curfman McInnes           col = idxn[j] - cstart;
297b49de8d1SLois Curfman McInnes           ierr = MatGetValues(aij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
298fa852ad4SSatish Balay         } else {
299905e6a2fSBarry Smith           if (!aij->colmap) {
300905e6a2fSBarry Smith             ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr);
301905e6a2fSBarry Smith           }
302aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3030f5bd95cSBarry Smith           ierr = PetscTableFind(aij->colmap,idxn[j]+1,&col);CHKERRQ(ierr);
304fa46199cSSatish Balay           col --;
305b1fc9764SSatish Balay #else
306905e6a2fSBarry Smith           col = aij->colmap[idxn[j]] - 1;
307b1fc9764SSatish Balay #endif
308e60e1c95SSatish Balay           if ((col < 0) || (aij->garray[col] != idxn[j])) *(v+i*n+j) = 0.0;
309d9d09a02SSatish Balay           else {
310b49de8d1SLois Curfman McInnes             ierr = MatGetValues(aij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
311b49de8d1SLois Curfman McInnes           }
312b49de8d1SLois Curfman McInnes         }
313b49de8d1SLois Curfman McInnes       }
314a8c6a408SBarry Smith     } else {
31529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
316b49de8d1SLois Curfman McInnes     }
317b49de8d1SLois Curfman McInnes   }
3183a40ed3dSBarry Smith   PetscFunctionReturn(0);
319b49de8d1SLois Curfman McInnes }
320bc5ccf88SSatish Balay 
3214a2ae208SSatish Balay #undef __FUNCT__
3224a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIAIJ"
323bc5ccf88SSatish Balay int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode)
324bc5ccf88SSatish Balay {
325bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ*)mat->data;
326d36fbae8SSatish Balay   int         ierr,nstash,reallocs;
327bc5ccf88SSatish Balay   InsertMode  addv;
328bc5ccf88SSatish Balay 
329bc5ccf88SSatish Balay   PetscFunctionBegin;
330bc5ccf88SSatish Balay   if (aij->donotstash) {
331bc5ccf88SSatish Balay     PetscFunctionReturn(0);
332bc5ccf88SSatish Balay   }
333bc5ccf88SSatish Balay 
334bc5ccf88SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
335bc5ccf88SSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
336bc5ccf88SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
33729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
338bc5ccf88SSatish Balay   }
339bc5ccf88SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
340bc5ccf88SSatish Balay 
3418798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,aij->rowners);CHKERRQ(ierr);
3428798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
343b0a32e0cSBarry Smith   PetscLogInfo(aij->A,"MatAssemblyBegin_MPIAIJ:Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
344bc5ccf88SSatish Balay   PetscFunctionReturn(0);
345bc5ccf88SSatish Balay }
346bc5ccf88SSatish Balay 
347bc5ccf88SSatish Balay 
3484a2ae208SSatish Balay #undef __FUNCT__
3494a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIAIJ"
350bc5ccf88SSatish Balay int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode)
351bc5ccf88SSatish Balay {
352bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
353a2d1c673SSatish Balay   int         i,j,rstart,ncols,n,ierr,flg;
354bc5ccf88SSatish Balay   int         *row,*col,other_disassembled;
35587828ca2SBarry Smith   PetscScalar *val;
356bc5ccf88SSatish Balay   InsertMode  addv = mat->insertmode;
3574032b0d1SHong Zhang #if defined(PETSC_HAVE_SUPERLUDIST) || defined(PETSC_HAVE_SPOOLES)
3589b9367d5SHong Zhang   PetscTruth  flag;
3599e070d67SMatthew Knepley #endif
360bc5ccf88SSatish Balay 
361bc5ccf88SSatish Balay   PetscFunctionBegin;
362bc5ccf88SSatish Balay   if (!aij->donotstash) {
363a2d1c673SSatish Balay     while (1) {
3648798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
365a2d1c673SSatish Balay       if (!flg) break;
366a2d1c673SSatish Balay 
367bc5ccf88SSatish Balay       for (i=0; i<n;) {
368bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
369bc5ccf88SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
370bc5ccf88SSatish Balay         if (j < n) ncols = j-i;
371bc5ccf88SSatish Balay         else       ncols = n-i;
372bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
373bc5ccf88SSatish Balay         ierr = MatSetValues_MPIAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
374bc5ccf88SSatish Balay         i = j;
375bc5ccf88SSatish Balay       }
376bc5ccf88SSatish Balay     }
3778798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
378bc5ccf88SSatish Balay   }
379bc5ccf88SSatish Balay 
380bc5ccf88SSatish Balay   ierr = MatAssemblyBegin(aij->A,mode);CHKERRQ(ierr);
381bc5ccf88SSatish Balay   ierr = MatAssemblyEnd(aij->A,mode);CHKERRQ(ierr);
382bc5ccf88SSatish Balay 
383bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
384bc5ccf88SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
385bc5ccf88SSatish Balay   /*
386bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
387bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
388bc5ccf88SSatish Balay   */
389bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ*)aij->B->data)->nonew)  {
390bc5ccf88SSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
391bc5ccf88SSatish Balay     if (mat->was_assembled && !other_disassembled) {
392bc5ccf88SSatish Balay       ierr = DisAssemble_MPIAIJ(mat);CHKERRQ(ierr);
393bc5ccf88SSatish Balay     }
394bc5ccf88SSatish Balay   }
395bc5ccf88SSatish Balay 
396bc5ccf88SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
397bc5ccf88SSatish Balay     ierr = MatSetUpMultiply_MPIAIJ(mat);CHKERRQ(ierr);
398bc5ccf88SSatish Balay   }
399bc5ccf88SSatish Balay   ierr = MatAssemblyBegin(aij->B,mode);CHKERRQ(ierr);
400bc5ccf88SSatish Balay   ierr = MatAssemblyEnd(aij->B,mode);CHKERRQ(ierr);
401bc5ccf88SSatish Balay 
402606d414cSSatish Balay   if (aij->rowvalues) {
403606d414cSSatish Balay     ierr = PetscFree(aij->rowvalues);CHKERRQ(ierr);
404606d414cSSatish Balay     aij->rowvalues = 0;
405606d414cSSatish Balay   }
4069b9367d5SHong Zhang #if defined(PETSC_HAVE_SUPERLUDIST)
407e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(mat->prefix,"-mat_aij_superlu_dist",&flag);CHKERRQ(ierr);
4089b9367d5SHong Zhang   if (flag) { ierr = MatUseSuperLU_DIST_MPIAIJ(mat);CHKERRQ(ierr); }
4099b9367d5SHong Zhang #endif
4104032b0d1SHong Zhang 
4114032b0d1SHong Zhang #if defined(PETSC_HAVE_SPOOLES)
412e82a3eeeSBarry Smith   ierr = PetscOptionsHasName(mat->prefix,"-mat_aij_spooles",&flag);CHKERRQ(ierr);
4134032b0d1SHong Zhang   if (flag) { ierr = MatUseSpooles_MPIAIJ(mat);CHKERRQ(ierr); }
4144032b0d1SHong Zhang #endif
415bc5ccf88SSatish Balay   PetscFunctionReturn(0);
416bc5ccf88SSatish Balay }
417bc5ccf88SSatish Balay 
4184a2ae208SSatish Balay #undef __FUNCT__
4194a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIAIJ"
4208f6be9afSLois Curfman McInnes int MatZeroEntries_MPIAIJ(Mat A)
4211eb62cbbSBarry Smith {
42244a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ*)A->data;
423dbd7a890SLois Curfman McInnes   int        ierr;
4243a40ed3dSBarry Smith 
4253a40ed3dSBarry Smith   PetscFunctionBegin;
42678b31e54SBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
42778b31e54SBarry Smith   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
4283a40ed3dSBarry Smith   PetscFunctionReturn(0);
4291eb62cbbSBarry Smith }
4301eb62cbbSBarry Smith 
4314a2ae208SSatish Balay #undef __FUNCT__
4324a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIAIJ"
43387828ca2SBarry Smith int MatZeroRows_MPIAIJ(Mat A,IS is,PetscScalar *diag)
4341eb62cbbSBarry Smith {
43544a69424SLois Curfman McInnes   Mat_MPIAIJ     *l = (Mat_MPIAIJ*)A->data;
43617699dbbSLois Curfman McInnes   int            i,ierr,N,*rows,*owners = l->rowners,size = l->size;
43735d8aa7fSBarry Smith   int            *procs,*nprocs,j,idx,nsends,*work,row;
43817699dbbSLois Curfman McInnes   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
4395392566eSBarry Smith   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
4406a5c57faSSatish Balay   int            *lens,imdex,*lrows,*values,rstart=l->rstart;
441d6dfbf8fSBarry Smith   MPI_Comm       comm = A->comm;
4421eb62cbbSBarry Smith   MPI_Request    *send_waits,*recv_waits;
4431eb62cbbSBarry Smith   MPI_Status     recv_status,*send_status;
4441eb62cbbSBarry Smith   IS             istmp;
44535d8aa7fSBarry Smith   PetscTruth     found;
4461eb62cbbSBarry Smith 
4473a40ed3dSBarry Smith   PetscFunctionBegin;
448e03a110bSBarry Smith   ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr);
44978b31e54SBarry Smith   ierr = ISGetIndices(is,&rows);CHKERRQ(ierr);
4501eb62cbbSBarry Smith 
4511eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
452b0a32e0cSBarry Smith   ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr);
453549d3d68SSatish Balay   ierr   = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr);
454549d3d68SSatish Balay   procs  = nprocs + size;
455b0a32e0cSBarry Smith   ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/
4561eb62cbbSBarry Smith   for (i=0; i<N; i++) {
4571eb62cbbSBarry Smith     idx = rows[i];
45835d8aa7fSBarry Smith     found = PETSC_FALSE;
45917699dbbSLois Curfman McInnes     for (j=0; j<size; j++) {
4601eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
46135d8aa7fSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break;
4621eb62cbbSBarry Smith       }
4631eb62cbbSBarry Smith     }
46429bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
4651eb62cbbSBarry Smith   }
46617699dbbSLois Curfman McInnes   nsends = 0;  for (i=0; i<size; i++) { nsends += procs[i];}
4671eb62cbbSBarry Smith 
4681eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
469b0a32e0cSBarry Smith   ierr = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr);
4706831982aSBarry Smith   ierr   = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr);
4716831982aSBarry Smith   nrecvs = work[size+rank];
47217699dbbSLois Curfman McInnes   nmax   = work[rank];
473606d414cSSatish Balay   ierr   = PetscFree(work);CHKERRQ(ierr);
4741eb62cbbSBarry Smith 
4751eb62cbbSBarry Smith   /* post receives:   */
476b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr);
477b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
4781eb62cbbSBarry Smith   for (i=0; i<nrecvs; i++) {
479ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
4801eb62cbbSBarry Smith   }
4811eb62cbbSBarry Smith 
4821eb62cbbSBarry Smith   /* do sends:
4831eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
4841eb62cbbSBarry Smith          the ith processor
4851eb62cbbSBarry Smith   */
486b0a32e0cSBarry Smith   ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr);
487b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
488b0a32e0cSBarry Smith   ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr);
4891eb62cbbSBarry Smith   starts[0] = 0;
49017699dbbSLois Curfman McInnes   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];}
4911eb62cbbSBarry Smith   for (i=0; i<N; i++) {
4921eb62cbbSBarry Smith     svalues[starts[owner[i]]++] = rows[i];
4931eb62cbbSBarry Smith   }
4946831982aSBarry Smith   ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr);
4951eb62cbbSBarry Smith 
4961eb62cbbSBarry Smith   starts[0] = 0;
49717699dbbSLois Curfman McInnes   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];}
4981eb62cbbSBarry Smith   count = 0;
49917699dbbSLois Curfman McInnes   for (i=0; i<size; i++) {
5001eb62cbbSBarry Smith     if (procs[i]) {
501ca161407SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
5021eb62cbbSBarry Smith     }
5031eb62cbbSBarry Smith   }
504606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
5051eb62cbbSBarry Smith 
50617699dbbSLois Curfman McInnes   base = owners[rank];
5071eb62cbbSBarry Smith 
5081eb62cbbSBarry Smith   /*  wait on receives */
509b0a32e0cSBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr);
5101eb62cbbSBarry Smith   source = lens + nrecvs;
5111eb62cbbSBarry Smith   count  = nrecvs; slen = 0;
5121eb62cbbSBarry Smith   while (count) {
513ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
5141eb62cbbSBarry Smith     /* unpack receives into our local space */
515ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
516d6dfbf8fSBarry Smith     source[imdex]  = recv_status.MPI_SOURCE;
517d6dfbf8fSBarry Smith     lens[imdex]    = n;
5181eb62cbbSBarry Smith     slen          += n;
5191eb62cbbSBarry Smith     count--;
5201eb62cbbSBarry Smith   }
521606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
5221eb62cbbSBarry Smith 
5231eb62cbbSBarry Smith   /* move the data into the send scatter */
524b0a32e0cSBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr);
5251eb62cbbSBarry Smith   count = 0;
5261eb62cbbSBarry Smith   for (i=0; i<nrecvs; i++) {
5271eb62cbbSBarry Smith     values = rvalues + i*nmax;
5281eb62cbbSBarry Smith     for (j=0; j<lens[i]; j++) {
5291eb62cbbSBarry Smith       lrows[count++] = values[j] - base;
5301eb62cbbSBarry Smith     }
5311eb62cbbSBarry Smith   }
532606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
533606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
534606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
535606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
5361eb62cbbSBarry Smith 
5371eb62cbbSBarry Smith   /* actually zap the local rows */
538029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
539b0a32e0cSBarry Smith   PetscLogObjectParent(A,istmp);
5406a5c57faSSatish Balay 
5416eb55b6aSBarry Smith   /*
5426eb55b6aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
5436eb55b6aSBarry Smith      is square and the user wishes to set the diagonal we use seperate
5446eb55b6aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
5456eb55b6aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
5466eb55b6aSBarry Smith 
5476eb55b6aSBarry Smith        Contributed by: Mathew Knepley
5486eb55b6aSBarry Smith   */
549e2d53e46SBarry Smith   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
550e2d53e46SBarry Smith   ierr = MatZeroRows(l->B,istmp,0);CHKERRQ(ierr);
5516eb55b6aSBarry Smith   if (diag && (l->A->M == l->A->N)) {
5526eb55b6aSBarry Smith     ierr      = MatZeroRows(l->A,istmp,diag);CHKERRQ(ierr);
553e2d53e46SBarry Smith   } else if (diag) {
554e2d53e46SBarry Smith     ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr);
555fa46199cSSatish Balay     if (((Mat_SeqAIJ*)l->A->data)->nonew) {
55629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options\n\
557fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
5586525c446SSatish Balay     }
559e2d53e46SBarry Smith     for (i = 0; i < slen; i++) {
560e2d53e46SBarry Smith       row  = lrows[i] + rstart;
561e2d53e46SBarry Smith       ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr);
562e2d53e46SBarry Smith     }
563e2d53e46SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
564e2d53e46SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
5656eb55b6aSBarry Smith   } else {
5666a5c57faSSatish Balay     ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr);
5676eb55b6aSBarry Smith   }
56878b31e54SBarry Smith   ierr = ISDestroy(istmp);CHKERRQ(ierr);
569606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
57072dacd9aSBarry Smith 
5711eb62cbbSBarry Smith   /* wait on sends */
5721eb62cbbSBarry Smith   if (nsends) {
573b0a32e0cSBarry Smith     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
574ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
575606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
5761eb62cbbSBarry Smith   }
577606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
578606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
5791eb62cbbSBarry Smith 
5803a40ed3dSBarry Smith   PetscFunctionReturn(0);
5811eb62cbbSBarry Smith }
5821eb62cbbSBarry Smith 
5834a2ae208SSatish Balay #undef __FUNCT__
5844a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIAIJ"
5858f6be9afSLois Curfman McInnes int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy)
5861eb62cbbSBarry Smith {
587416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
588fbd6ef76SBarry Smith   int        ierr,nt;
589416022c9SBarry Smith 
5903a40ed3dSBarry Smith   PetscFunctionBegin;
591a2ce50c7SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
592273d9f13SBarry Smith   if (nt != A->n) {
593273d9f13SBarry Smith     SETERRQ2(PETSC_ERR_ARG_SIZ,"Incompatible partition of A (%d) and xx (%d)",A->n,nt);
594fbd6ef76SBarry Smith   }
59543a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
596f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
59743a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
598f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
5993a40ed3dSBarry Smith   PetscFunctionReturn(0);
6001eb62cbbSBarry Smith }
6011eb62cbbSBarry Smith 
6024a2ae208SSatish Balay #undef __FUNCT__
6034a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIAIJ"
6048f6be9afSLois Curfman McInnes int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
605da3a660dSBarry Smith {
606416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
607da3a660dSBarry Smith   int        ierr;
6083a40ed3dSBarry Smith 
6093a40ed3dSBarry Smith   PetscFunctionBegin;
61043a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
611f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
61243a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
613f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
6143a40ed3dSBarry Smith   PetscFunctionReturn(0);
615da3a660dSBarry Smith }
616da3a660dSBarry Smith 
6174a2ae208SSatish Balay #undef __FUNCT__
6184a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIAIJ"
6197c922b88SBarry Smith int MatMultTranspose_MPIAIJ(Mat A,Vec xx,Vec yy)
620da3a660dSBarry Smith {
621416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
622da3a660dSBarry Smith   int        ierr;
623da3a660dSBarry Smith 
6243a40ed3dSBarry Smith   PetscFunctionBegin;
625da3a660dSBarry Smith   /* do nondiagonal part */
6267c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
627da3a660dSBarry Smith   /* send it on its way */
628537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
629da3a660dSBarry Smith   /* do local part */
6307c922b88SBarry Smith   ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
631da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
632da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
633da3a660dSBarry Smith   /* but is not perhaps always true. */
634537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
6353a40ed3dSBarry Smith   PetscFunctionReturn(0);
636da3a660dSBarry Smith }
637da3a660dSBarry Smith 
6384a2ae208SSatish Balay #undef __FUNCT__
6394a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIAIJ"
6407c922b88SBarry Smith int MatMultTransposeAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
641da3a660dSBarry Smith {
642416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
643da3a660dSBarry Smith   int        ierr;
644da3a660dSBarry Smith 
6453a40ed3dSBarry Smith   PetscFunctionBegin;
646da3a660dSBarry Smith   /* do nondiagonal part */
6477c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
648da3a660dSBarry Smith   /* send it on its way */
649537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
650da3a660dSBarry Smith   /* do local part */
6517c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
652da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
653da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
654da3a660dSBarry Smith   /* but is not perhaps always true. */
6550a198c4cSBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
6563a40ed3dSBarry Smith   PetscFunctionReturn(0);
657da3a660dSBarry Smith }
658da3a660dSBarry Smith 
6591eb62cbbSBarry Smith /*
6601eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
6611eb62cbbSBarry Smith    diagonal block
6621eb62cbbSBarry Smith */
6634a2ae208SSatish Balay #undef __FUNCT__
6644a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIAIJ"
6658f6be9afSLois Curfman McInnes int MatGetDiagonal_MPIAIJ(Mat A,Vec v)
6661eb62cbbSBarry Smith {
6673a40ed3dSBarry Smith   int        ierr;
668416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
6693a40ed3dSBarry Smith 
6703a40ed3dSBarry Smith   PetscFunctionBegin;
671273d9f13SBarry Smith   if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
6725baf8537SBarry Smith   if (a->rstart != a->cstart || a->rend != a->cend) {
67329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"row partition must equal col partition");
6743a40ed3dSBarry Smith   }
6753a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
6763a40ed3dSBarry Smith   PetscFunctionReturn(0);
6771eb62cbbSBarry Smith }
6781eb62cbbSBarry Smith 
6794a2ae208SSatish Balay #undef __FUNCT__
6804a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIAIJ"
68187828ca2SBarry Smith int MatScale_MPIAIJ(PetscScalar *aa,Mat A)
682052efed2SBarry Smith {
683052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
684052efed2SBarry Smith   int        ierr;
6853a40ed3dSBarry Smith 
6863a40ed3dSBarry Smith   PetscFunctionBegin;
687052efed2SBarry Smith   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
688052efed2SBarry Smith   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
6893a40ed3dSBarry Smith   PetscFunctionReturn(0);
690052efed2SBarry Smith }
691052efed2SBarry Smith 
6924a2ae208SSatish Balay #undef __FUNCT__
6934a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIAIJ"
694e1311b90SBarry Smith int MatDestroy_MPIAIJ(Mat mat)
6951eb62cbbSBarry Smith {
69644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
6971eb62cbbSBarry Smith   int        ierr;
69883e2fdc7SBarry Smith 
6993a40ed3dSBarry Smith   PetscFunctionBegin;
700aa482453SBarry Smith #if defined(PETSC_USE_LOG)
701b0a32e0cSBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",mat->M,mat->N);
702a5a9c739SBarry Smith #endif
7038798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
704606d414cSSatish Balay   ierr = PetscFree(aij->rowners);CHKERRQ(ierr);
70578b31e54SBarry Smith   ierr = MatDestroy(aij->A);CHKERRQ(ierr);
70678b31e54SBarry Smith   ierr = MatDestroy(aij->B);CHKERRQ(ierr);
707aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
7080f5bd95cSBarry Smith   if (aij->colmap) {ierr = PetscTableDelete(aij->colmap);CHKERRQ(ierr);}
709b1fc9764SSatish Balay #else
710606d414cSSatish Balay   if (aij->colmap) {ierr = PetscFree(aij->colmap);CHKERRQ(ierr);}
711b1fc9764SSatish Balay #endif
712606d414cSSatish Balay   if (aij->garray) {ierr = PetscFree(aij->garray);CHKERRQ(ierr);}
7137c922b88SBarry Smith   if (aij->lvec)   {ierr = VecDestroy(aij->lvec);CHKERRQ(ierr);}
7147c922b88SBarry Smith   if (aij->Mvctx)  {ierr = VecScatterDestroy(aij->Mvctx);CHKERRQ(ierr);}
715606d414cSSatish Balay   if (aij->rowvalues) {ierr = PetscFree(aij->rowvalues);CHKERRQ(ierr);}
716606d414cSSatish Balay   ierr = PetscFree(aij);CHKERRQ(ierr);
7173a40ed3dSBarry Smith   PetscFunctionReturn(0);
7181eb62cbbSBarry Smith }
719ee50ffe9SBarry Smith 
7204aedb280SBarry Smith extern int MatMPIAIJFactorInfo_SuperLu(Mat,PetscViewer);
721a072f7f7SHong Zhang extern int MatFactorInfo_Spooles(Mat,PetscViewer);
7224aedb280SBarry Smith 
7234a2ae208SSatish Balay #undef __FUNCT__
7244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIAIJ_ASCIIorDraworSocket"
725b0a32e0cSBarry Smith int MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
726416022c9SBarry Smith {
72744a69424SLois Curfman McInnes   Mat_MPIAIJ        *aij = (Mat_MPIAIJ*)mat->data;
728dbb450caSBarry Smith   Mat_SeqAIJ*       C = (Mat_SeqAIJ*)aij->A->data;
729fb9695e5SSatish Balay   int               ierr,shift = C->indexshift,rank = aij->rank,size = aij->size;
730f1af5d2fSBarry Smith   PetscTruth        isdraw,isascii,flg;
731b0a32e0cSBarry Smith   PetscViewer       sviewer;
732f3ef73ceSBarry Smith   PetscViewerFormat format;
733416022c9SBarry Smith 
7343a40ed3dSBarry Smith   PetscFunctionBegin;
735fb9695e5SSatish Balay   ierr  = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
736b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
7370f5bd95cSBarry Smith   if (isascii) {
738b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
739*456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
7404e220ebcSLois Curfman McInnes       MatInfo info;
7411dab6e02SBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
742888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
743b0a32e0cSBarry Smith       ierr = PetscOptionsHasName(PETSC_NULL,"-mat_aij_no_inode",&flg);CHKERRQ(ierr);
7446831982aSBarry Smith       if (flg) {
745b0a32e0cSBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d mem %d, not using I-node routines\n",
746273d9f13SBarry Smith 					      rank,mat->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory);CHKERRQ(ierr);
7476831982aSBarry Smith       } else {
748b0a32e0cSBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d mem %d, using I-node routines\n",
749273d9f13SBarry Smith 		    rank,mat->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory);CHKERRQ(ierr);
7506831982aSBarry Smith       }
751888f2ed8SSatish Balay       ierr = MatGetInfo(aij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
752b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used);CHKERRQ(ierr);
753888f2ed8SSatish Balay       ierr = MatGetInfo(aij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
754b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used);CHKERRQ(ierr);
755b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
756a40aa06bSLois Curfman McInnes       ierr = VecScatterView(aij->Mvctx,viewer);CHKERRQ(ierr);
7573a40ed3dSBarry Smith       PetscFunctionReturn(0);
758fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
7593a40ed3dSBarry Smith       PetscFunctionReturn(0);
7604aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
7614aedb280SBarry Smith #if defined(PETSC_HAVE_SUPERLUDIST) && !defined(PETSC_USE_SINGLE) && !defined(PETSC_USE_COMPLEX)
7624aedb280SBarry Smith       ierr = MatMPIAIJFactorInfo_SuperLu(mat,viewer);CHKERRQ(ierr);
7634aedb280SBarry Smith #endif
7640473ca23SHong Zhang #if defined(PETSC_HAVE_SPOOLES) && !defined(PETSC_USE_SINGLE) && !defined(PETSC_USE_COMPLEX)
765a072f7f7SHong Zhang       ierr = MatFactorInfo_Spooles(mat,viewer);CHKERRQ(ierr);
7660473ca23SHong Zhang #endif
767471340fbSHong Zhang 
7684aedb280SBarry Smith       PetscFunctionReturn(0);
76908480c60SBarry Smith     }
7700f5bd95cSBarry Smith   } else if (isdraw) {
771b0a32e0cSBarry Smith     PetscDraw       draw;
77219bcc07fSBarry Smith     PetscTruth isnull;
773b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
774b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
77519bcc07fSBarry Smith   }
77619bcc07fSBarry Smith 
77717699dbbSLois Curfman McInnes   if (size == 1) {
778e36acaf3SBarry Smith     ierr = PetscObjectSetName((PetscObject)aij->A,mat->name);CHKERRQ(ierr);
77978b31e54SBarry Smith     ierr = MatView(aij->A,viewer);CHKERRQ(ierr);
7803a40ed3dSBarry Smith   } else {
78195373324SBarry Smith     /* assemble the entire matrix onto first processor. */
78295373324SBarry Smith     Mat         A;
783ec8511deSBarry Smith     Mat_SeqAIJ *Aloc;
784273d9f13SBarry Smith     int         M = mat->M,N = mat->N,m,*ai,*aj,row,*cols,i,*ct;
78587828ca2SBarry Smith     PetscScalar *a;
7862ee70a88SLois Curfman McInnes 
78717699dbbSLois Curfman McInnes     if (!rank) {
78855843e3eSBarry Smith       ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
7893a40ed3dSBarry Smith     } else {
79055843e3eSBarry Smith       ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
79195373324SBarry Smith     }
792b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
793416022c9SBarry Smith 
79495373324SBarry Smith     /* copy over the A part */
795ec8511deSBarry Smith     Aloc = (Mat_SeqAIJ*)aij->A->data;
796273d9f13SBarry Smith     m = aij->A->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
79795373324SBarry Smith     row = aij->rstart;
798dbb450caSBarry Smith     for (i=0; i<ai[m]+shift; i++) {aj[i] += aij->cstart + shift;}
79995373324SBarry Smith     for (i=0; i<m; i++) {
800416022c9SBarry Smith       ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr);
80195373324SBarry Smith       row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
80295373324SBarry Smith     }
8032ee70a88SLois Curfman McInnes     aj = Aloc->j;
804dbb450caSBarry Smith     for (i=0; i<ai[m]+shift; i++) {aj[i] -= aij->cstart + shift;}
80595373324SBarry Smith 
80695373324SBarry Smith     /* copy over the B part */
807ec8511deSBarry Smith     Aloc = (Mat_SeqAIJ*)aij->B->data;
808273d9f13SBarry Smith     m    = aij->B->m;  ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
80995373324SBarry Smith     row  = aij->rstart;
810b0a32e0cSBarry Smith     ierr = PetscMalloc((ai[m]+1)*sizeof(int),&cols);CHKERRQ(ierr);
811b0a32e0cSBarry Smith     ct   = cols;
812dbb450caSBarry Smith     for (i=0; i<ai[m]+shift; i++) {cols[i] = aij->garray[aj[i]+shift];}
81395373324SBarry Smith     for (i=0; i<m; i++) {
814416022c9SBarry Smith       ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr);
81595373324SBarry Smith       row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
81695373324SBarry Smith     }
817606d414cSSatish Balay     ierr = PetscFree(ct);CHKERRQ(ierr);
8186d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8196d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
82055843e3eSBarry Smith     /*
82155843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
822b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
82355843e3eSBarry Smith     */
824b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
825e03a110bSBarry Smith     if (!rank) {
826e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
8276831982aSBarry Smith       ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
82895373324SBarry Smith     }
829b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
83078b31e54SBarry Smith     ierr = MatDestroy(A);CHKERRQ(ierr);
83195373324SBarry Smith   }
8323a40ed3dSBarry Smith   PetscFunctionReturn(0);
8331eb62cbbSBarry Smith }
8341eb62cbbSBarry Smith 
8354a2ae208SSatish Balay #undef __FUNCT__
8364a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIAIJ"
837b0a32e0cSBarry Smith int MatView_MPIAIJ(Mat mat,PetscViewer viewer)
838416022c9SBarry Smith {
839416022c9SBarry Smith   int        ierr;
8406831982aSBarry Smith   PetscTruth isascii,isdraw,issocket,isbinary;
841416022c9SBarry Smith 
8423a40ed3dSBarry Smith   PetscFunctionBegin;
843b0a32e0cSBarry Smith   ierr  = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
844fb9695e5SSatish Balay   ierr  = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
845fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
846b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
8470f5bd95cSBarry Smith   if (isascii || isdraw || isbinary || issocket) {
8487b2a1423SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
8495cd90555SBarry Smith   } else {
85029bbc08cSBarry Smith     SETERRQ1(1,"Viewer type %s not supported by MPIAIJ matrices",((PetscObject)viewer)->type_name);
851416022c9SBarry Smith   }
8523a40ed3dSBarry Smith   PetscFunctionReturn(0);
853416022c9SBarry Smith }
854416022c9SBarry Smith 
8551eb62cbbSBarry Smith 
856c14dc6b6SHong Zhang 
8574a2ae208SSatish Balay #undef __FUNCT__
8584a2ae208SSatish Balay #define __FUNCT__ "MatRelax_MPIAIJ"
859c14dc6b6SHong Zhang int MatRelax_MPIAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,int its,int lits,Vec xx)
8608a729477SBarry Smith {
86144a69424SLois Curfman McInnes   Mat_MPIAIJ   *mat = (Mat_MPIAIJ*)matin->data;
862c14dc6b6SHong Zhang   int          ierr;
863c14dc6b6SHong Zhang   Vec          bb1;
864a6c309e7SHong Zhang   PetscScalar  mone=-1.0;
8658a729477SBarry Smith 
8663a40ed3dSBarry Smith   PetscFunctionBegin;
86791723122SBarry Smith   if (its <= 0 || lits <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %d and local its %d both positive",its,lits);
868c14dc6b6SHong Zhang 
869c14dc6b6SHong Zhang   ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
8702798e883SHong Zhang 
871c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
872da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
873bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,lits,xx);CHKERRQ(ierr);
8742798e883SHong Zhang       its--;
875da3a660dSBarry Smith     }
8762798e883SHong Zhang 
8772798e883SHong Zhang     while (its--) {
8783a40ed3dSBarry Smith       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
8793a40ed3dSBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
8802798e883SHong Zhang 
881c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
882c14dc6b6SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
883c14dc6b6SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
8842798e883SHong Zhang 
885c14dc6b6SHong Zhang       /* local sweep */
886bd3bf7d3SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,lits,xx);
887c14dc6b6SHong Zhang       CHKERRQ(ierr);
8882798e883SHong Zhang     }
8893a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP){
890da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
891c14dc6b6SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr);
8922798e883SHong Zhang       its--;
893da3a660dSBarry Smith     }
8942798e883SHong Zhang     while (its--) {
8953a40ed3dSBarry Smith       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
8963a40ed3dSBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
8972798e883SHong Zhang 
898c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
899c14dc6b6SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
900c14dc6b6SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
901c14dc6b6SHong Zhang 
902c14dc6b6SHong Zhang       /* local sweep */
903a6c309e7SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,PETSC_NULL,xx);
904c14dc6b6SHong Zhang       CHKERRQ(ierr);
9052798e883SHong Zhang     }
9063a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
907da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
908c14dc6b6SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb,omega,flag,fshift,lits,PETSC_NULL,xx);CHKERRQ(ierr);
9092798e883SHong Zhang       its--;
910da3a660dSBarry Smith     }
9112798e883SHong Zhang     while (its--) {
9122e8a6d31SBarry Smith       ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
9132e8a6d31SBarry Smith       ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
9142798e883SHong Zhang 
915c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
916c14dc6b6SHong Zhang       ierr = VecScale(&mone,mat->lvec);CHKERRQ(ierr);
917c14dc6b6SHong Zhang       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
9182798e883SHong Zhang 
919c14dc6b6SHong Zhang       /* local sweep */
920a6c309e7SHong Zhang       ierr = (*mat->A->ops->relax)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,PETSC_NULL,xx);
921c14dc6b6SHong Zhang       CHKERRQ(ierr);
9222798e883SHong Zhang     }
9233a40ed3dSBarry Smith   } else {
92429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Parallel SOR not supported");
925c16cb8f2SBarry Smith   }
926c14dc6b6SHong Zhang 
927c14dc6b6SHong Zhang   ierr = VecDestroy(bb1);CHKERRQ(ierr);
9283a40ed3dSBarry Smith   PetscFunctionReturn(0);
9298a729477SBarry Smith }
930a66be287SLois Curfman McInnes 
9314a2ae208SSatish Balay #undef __FUNCT__
9324a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIAIJ"
9338f6be9afSLois Curfman McInnes int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,MatInfo *info)
934a66be287SLois Curfman McInnes {
935a66be287SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ*)matin->data;
936a66be287SLois Curfman McInnes   Mat        A = mat->A,B = mat->B;
9374e220ebcSLois Curfman McInnes   int        ierr;
938329f5518SBarry Smith   PetscReal  isend[5],irecv[5];
939a66be287SLois Curfman McInnes 
9403a40ed3dSBarry Smith   PetscFunctionBegin;
9414e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
9424e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
9434e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
9444e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
9454e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
9464e220ebcSLois Curfman McInnes   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
9474e220ebcSLois Curfman McInnes   isend[3] += info->memory;  isend[4] += info->mallocs;
948a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
9494e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
9504e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
9514e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
9524e220ebcSLois Curfman McInnes     info->memory       = isend[3];
9534e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
954a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
955d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
9564e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
9574e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
9584e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
9594e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
9604e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
961a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
962d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
9634e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
9644e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
9654e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
9664e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
9674e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
968a66be287SLois Curfman McInnes   }
9694e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
9704e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
9714e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
972273d9f13SBarry Smith   info->rows_global       = (double)matin->M;
973273d9f13SBarry Smith   info->columns_global    = (double)matin->N;
974273d9f13SBarry Smith   info->rows_local        = (double)matin->m;
975273d9f13SBarry Smith   info->columns_local     = (double)matin->N;
9764e220ebcSLois Curfman McInnes 
9773a40ed3dSBarry Smith   PetscFunctionReturn(0);
978a66be287SLois Curfman McInnes }
979a66be287SLois Curfman McInnes 
9804a2ae208SSatish Balay #undef __FUNCT__
9814a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIAIJ"
9828f6be9afSLois Curfman McInnes int MatSetOption_MPIAIJ(Mat A,MatOption op)
983c74985f6SBarry Smith {
984c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
9851dee9f54SBarry Smith   int        ierr;
986c74985f6SBarry Smith 
9873a40ed3dSBarry Smith   PetscFunctionBegin;
98812c028f9SKris Buschelman   switch (op) {
98912c028f9SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
99012c028f9SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
99112c028f9SKris Buschelman   case MAT_COLUMNS_UNSORTED:
99212c028f9SKris Buschelman   case MAT_COLUMNS_SORTED:
99312c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
99412c028f9SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
99512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
99612c028f9SKris Buschelman   case MAT_USE_INODES:
99712c028f9SKris Buschelman   case MAT_DO_NOT_USE_INODES:
99812c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
9991dee9f54SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
10001dee9f54SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
100112c028f9SKris Buschelman     break;
100212c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
10037c922b88SBarry Smith     a->roworiented = PETSC_TRUE;
10041dee9f54SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
10051dee9f54SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
100612c028f9SKris Buschelman     break;
100712c028f9SKris Buschelman   case MAT_ROWS_SORTED:
100812c028f9SKris Buschelman   case MAT_ROWS_UNSORTED:
100912c028f9SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1010d03495bdSKris Buschelman   case MAT_USE_SINGLE_PRECISION_SOLVES:
1011b0a32e0cSBarry Smith     PetscLogInfo(A,"MatSetOption_MPIAIJ:Option ignored\n");
101212c028f9SKris Buschelman     break;
101312c028f9SKris Buschelman   case MAT_COLUMN_ORIENTED:
10147c922b88SBarry Smith     a->roworiented = PETSC_FALSE;
10151dee9f54SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
10161dee9f54SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
101712c028f9SKris Buschelman     break;
101812c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
10197c922b88SBarry Smith     a->donotstash = PETSC_TRUE;
102012c028f9SKris Buschelman     break;
102112c028f9SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
102229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
102312c028f9SKris Buschelman   default:
102429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
10253a40ed3dSBarry Smith   }
10263a40ed3dSBarry Smith   PetscFunctionReturn(0);
1027c74985f6SBarry Smith }
1028c74985f6SBarry Smith 
10294a2ae208SSatish Balay #undef __FUNCT__
10304a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIAIJ"
103187828ca2SBarry Smith int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v)
103239e00950SLois Curfman McInnes {
1033154123eaSLois Curfman McInnes   Mat_MPIAIJ   *mat = (Mat_MPIAIJ*)matin->data;
103487828ca2SBarry Smith   PetscScalar  *vworkA,*vworkB,**pvA,**pvB,*v_p;
1035154123eaSLois Curfman McInnes   int          i,ierr,*cworkA,*cworkB,**pcA,**pcB,cstart = mat->cstart;
1036154123eaSLois Curfman McInnes   int          nztot,nzA,nzB,lrow,rstart = mat->rstart,rend = mat->rend;
103770f0671dSBarry Smith   int          *cmap,*idx_p;
103839e00950SLois Curfman McInnes 
10393a40ed3dSBarry Smith   PetscFunctionBegin;
104029bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
10417a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
10427a0afa10SBarry Smith 
104370f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
10447a0afa10SBarry Smith     /*
10457a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
10467a0afa10SBarry Smith     */
10477a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ*)mat->A->data,*Ba = (Mat_SeqAIJ*)mat->B->data;
1048273d9f13SBarry Smith     int     max = 1,tmp;
1049273d9f13SBarry Smith     for (i=0; i<matin->m; i++) {
10507a0afa10SBarry Smith       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
10517a0afa10SBarry Smith       if (max < tmp) { max = tmp; }
10527a0afa10SBarry Smith     }
105387828ca2SBarry Smith     ierr = PetscMalloc(max*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
10547a0afa10SBarry Smith     mat->rowindices = (int*)(mat->rowvalues + max);
10557a0afa10SBarry Smith   }
10567a0afa10SBarry Smith 
105729bbc08cSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Only local rows")
1058abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
105939e00950SLois Curfman McInnes 
1060154123eaSLois Curfman McInnes   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1061154123eaSLois Curfman McInnes   if (!v)   {pvA = 0; pvB = 0;}
1062154123eaSLois Curfman McInnes   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1063f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1064f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1065154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1066154123eaSLois Curfman McInnes 
106770f0671dSBarry Smith   cmap  = mat->garray;
1068154123eaSLois Curfman McInnes   if (v  || idx) {
1069154123eaSLois Curfman McInnes     if (nztot) {
1070154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
107170f0671dSBarry Smith       int imark = -1;
1072154123eaSLois Curfman McInnes       if (v) {
107370f0671dSBarry Smith         *v = v_p = mat->rowvalues;
107439e00950SLois Curfman McInnes         for (i=0; i<nzB; i++) {
107570f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart)   v_p[i] = vworkB[i];
1076154123eaSLois Curfman McInnes           else break;
1077154123eaSLois Curfman McInnes         }
1078154123eaSLois Curfman McInnes         imark = i;
107970f0671dSBarry Smith         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
108070f0671dSBarry Smith         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1081154123eaSLois Curfman McInnes       }
1082154123eaSLois Curfman McInnes       if (idx) {
108370f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
108470f0671dSBarry Smith         if (imark > -1) {
108570f0671dSBarry Smith           for (i=0; i<imark; i++) {
108670f0671dSBarry Smith             idx_p[i] = cmap[cworkB[i]];
108770f0671dSBarry Smith           }
108870f0671dSBarry Smith         } else {
1089154123eaSLois Curfman McInnes           for (i=0; i<nzB; i++) {
109070f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart)   idx_p[i] = cmap[cworkB[i]];
1091154123eaSLois Curfman McInnes             else break;
1092154123eaSLois Curfman McInnes           }
1093154123eaSLois Curfman McInnes           imark = i;
109470f0671dSBarry Smith         }
109570f0671dSBarry Smith         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart + cworkA[i];
109670f0671dSBarry Smith         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]];
109739e00950SLois Curfman McInnes       }
10983f97c4b0SBarry Smith     } else {
10991ca473b0SSatish Balay       if (idx) *idx = 0;
11001ca473b0SSatish Balay       if (v)   *v   = 0;
11011ca473b0SSatish Balay     }
1102154123eaSLois Curfman McInnes   }
110339e00950SLois Curfman McInnes   *nz = nztot;
1104f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1105f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
11063a40ed3dSBarry Smith   PetscFunctionReturn(0);
110739e00950SLois Curfman McInnes }
110839e00950SLois Curfman McInnes 
11094a2ae208SSatish Balay #undef __FUNCT__
11104a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIAIJ"
111187828ca2SBarry Smith int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v)
111239e00950SLois Curfman McInnes {
11137a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
11143a40ed3dSBarry Smith 
11153a40ed3dSBarry Smith   PetscFunctionBegin;
11167a0afa10SBarry Smith   if (aij->getrowactive == PETSC_FALSE) {
111729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
11187a0afa10SBarry Smith   }
11197a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
11203a40ed3dSBarry Smith   PetscFunctionReturn(0);
112139e00950SLois Curfman McInnes }
112239e00950SLois Curfman McInnes 
11234a2ae208SSatish Balay #undef __FUNCT__
11244a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIAIJ"
1125329f5518SBarry Smith int MatNorm_MPIAIJ(Mat mat,NormType type,PetscReal *norm)
1126855ac2c5SLois Curfman McInnes {
1127855ac2c5SLois Curfman McInnes   Mat_MPIAIJ   *aij = (Mat_MPIAIJ*)mat->data;
1128ec8511deSBarry Smith   Mat_SeqAIJ   *amat = (Mat_SeqAIJ*)aij->A->data,*bmat = (Mat_SeqAIJ*)aij->B->data;
1129416022c9SBarry Smith   int          ierr,i,j,cstart = aij->cstart,shift = amat->indexshift;
1130329f5518SBarry Smith   PetscReal    sum = 0.0;
113187828ca2SBarry Smith   PetscScalar  *v;
113204ca555eSLois Curfman McInnes 
11333a40ed3dSBarry Smith   PetscFunctionBegin;
113417699dbbSLois Curfman McInnes   if (aij->size == 1) {
113514183eadSLois Curfman McInnes     ierr =  MatNorm(aij->A,type,norm);CHKERRQ(ierr);
113637fa93a5SLois Curfman McInnes   } else {
113704ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
113804ca555eSLois Curfman McInnes       v = amat->a;
113904ca555eSLois Curfman McInnes       for (i=0; i<amat->nz; i++) {
1140aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1141329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
114204ca555eSLois Curfman McInnes #else
114304ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
114404ca555eSLois Curfman McInnes #endif
114504ca555eSLois Curfman McInnes       }
114604ca555eSLois Curfman McInnes       v = bmat->a;
114704ca555eSLois Curfman McInnes       for (i=0; i<bmat->nz; i++) {
1148aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
1149329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
115004ca555eSLois Curfman McInnes #else
115104ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
115204ca555eSLois Curfman McInnes #endif
115304ca555eSLois Curfman McInnes       }
1154d7d1e502SBarry Smith       ierr = MPI_Allreduce(&sum,norm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
115504ca555eSLois Curfman McInnes       *norm = sqrt(*norm);
11563a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1157329f5518SBarry Smith       PetscReal *tmp,*tmp2;
115804ca555eSLois Curfman McInnes       int    *jj,*garray = aij->garray;
1159b0a32e0cSBarry Smith       ierr = PetscMalloc((mat->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
1160b0a32e0cSBarry Smith       ierr = PetscMalloc((mat->N+1)*sizeof(PetscReal),&tmp2);CHKERRQ(ierr);
1161273d9f13SBarry Smith       ierr = PetscMemzero(tmp,mat->N*sizeof(PetscReal));CHKERRQ(ierr);
116204ca555eSLois Curfman McInnes       *norm = 0.0;
116304ca555eSLois Curfman McInnes       v = amat->a; jj = amat->j;
116404ca555eSLois Curfman McInnes       for (j=0; j<amat->nz; j++) {
1165579c6b6fSBarry Smith         tmp[cstart + *jj++ + shift] += PetscAbsScalar(*v);  v++;
116604ca555eSLois Curfman McInnes       }
116704ca555eSLois Curfman McInnes       v = bmat->a; jj = bmat->j;
116804ca555eSLois Curfman McInnes       for (j=0; j<bmat->nz; j++) {
1169579c6b6fSBarry Smith         tmp[garray[*jj++ + shift]] += PetscAbsScalar(*v); v++;
117004ca555eSLois Curfman McInnes       }
1171d7d1e502SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
1172273d9f13SBarry Smith       for (j=0; j<mat->N; j++) {
117304ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
117404ca555eSLois Curfman McInnes       }
1175606d414cSSatish Balay       ierr = PetscFree(tmp);CHKERRQ(ierr);
1176606d414cSSatish Balay       ierr = PetscFree(tmp2);CHKERRQ(ierr);
11773a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1178329f5518SBarry Smith       PetscReal ntemp = 0.0;
1179273d9f13SBarry Smith       for (j=0; j<aij->A->m; j++) {
1180dbb450caSBarry Smith         v = amat->a + amat->i[j] + shift;
118104ca555eSLois Curfman McInnes         sum = 0.0;
118204ca555eSLois Curfman McInnes         for (i=0; i<amat->i[j+1]-amat->i[j]; i++) {
1183cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
118404ca555eSLois Curfman McInnes         }
1185dbb450caSBarry Smith         v = bmat->a + bmat->i[j] + shift;
118604ca555eSLois Curfman McInnes         for (i=0; i<bmat->i[j+1]-bmat->i[j]; i++) {
1187cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
118804ca555eSLois Curfman McInnes         }
1189515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
119004ca555eSLois Curfman McInnes       }
1191d7d1e502SBarry Smith       ierr = MPI_Allreduce(&ntemp,norm,1,MPIU_REAL,MPI_MAX,mat->comm);CHKERRQ(ierr);
1192ca161407SBarry Smith     } else {
119329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for two norm");
119404ca555eSLois Curfman McInnes     }
119537fa93a5SLois Curfman McInnes   }
11963a40ed3dSBarry Smith   PetscFunctionReturn(0);
1197855ac2c5SLois Curfman McInnes }
1198855ac2c5SLois Curfman McInnes 
11994a2ae208SSatish Balay #undef __FUNCT__
12004a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIAIJ"
12018f6be9afSLois Curfman McInnes int MatTranspose_MPIAIJ(Mat A,Mat *matout)
1202b7c46309SBarry Smith {
1203b7c46309SBarry Smith   Mat_MPIAIJ   *a = (Mat_MPIAIJ*)A->data;
1204dbb450caSBarry Smith   Mat_SeqAIJ   *Aloc = (Mat_SeqAIJ*)a->A->data;
1205416022c9SBarry Smith   int          ierr,shift = Aloc->indexshift;
1206273d9f13SBarry Smith   int          M = A->M,N = A->N,m,*ai,*aj,row,*cols,i,*ct;
12073a40ed3dSBarry Smith   Mat          B;
120887828ca2SBarry Smith   PetscScalar  *array;
1209b7c46309SBarry Smith 
12103a40ed3dSBarry Smith   PetscFunctionBegin;
12117c922b88SBarry Smith   if (!matout && M != N) {
121229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1213d4bb536fSBarry Smith   }
1214d4bb536fSBarry Smith 
1215273d9f13SBarry Smith   ierr = MatCreateMPIAIJ(A->comm,A->n,A->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr);
1216b7c46309SBarry Smith 
1217b7c46309SBarry Smith   /* copy over the A part */
1218ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*)a->A->data;
1219273d9f13SBarry Smith   m = a->A->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1220b7c46309SBarry Smith   row = a->rstart;
1221dbb450caSBarry Smith   for (i=0; i<ai[m]+shift; i++) {aj[i] += a->cstart + shift;}
1222b7c46309SBarry Smith   for (i=0; i<m; i++) {
1223416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1224b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
1225b7c46309SBarry Smith   }
1226b7c46309SBarry Smith   aj = Aloc->j;
12274af08d9eSBarry Smith   for (i=0; i<ai[m]+shift; i++) {aj[i] -= a->cstart + shift;}
1228b7c46309SBarry Smith 
1229b7c46309SBarry Smith   /* copy over the B part */
1230ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*)a->B->data;
1231273d9f13SBarry Smith   m = a->B->m;  ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1232b7c46309SBarry Smith   row  = a->rstart;
1233b0a32e0cSBarry Smith   ierr = PetscMalloc((1+ai[m]-shift)*sizeof(int),&cols);CHKERRQ(ierr);
1234b0a32e0cSBarry Smith   ct   = cols;
1235dbb450caSBarry Smith   for (i=0; i<ai[m]+shift; i++) {cols[i] = a->garray[aj[i]+shift];}
1236b7c46309SBarry Smith   for (i=0; i<m; i++) {
1237416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1238b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
1239b7c46309SBarry Smith   }
1240606d414cSSatish Balay   ierr = PetscFree(ct);CHKERRQ(ierr);
12416d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12426d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12437c922b88SBarry Smith   if (matout) {
12440de55854SLois Curfman McInnes     *matout = B;
12450de55854SLois Curfman McInnes   } else {
1246273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
12470de55854SLois Curfman McInnes   }
12483a40ed3dSBarry Smith   PetscFunctionReturn(0);
1249b7c46309SBarry Smith }
1250b7c46309SBarry Smith 
12514a2ae208SSatish Balay #undef __FUNCT__
12524a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIAIJ"
12534b967eb1SSatish Balay int MatDiagonalScale_MPIAIJ(Mat mat,Vec ll,Vec rr)
1254a008b906SSatish Balay {
12554b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ*)mat->data;
12564b967eb1SSatish Balay   Mat        a = aij->A,b = aij->B;
1257a008b906SSatish Balay   int        ierr,s1,s2,s3;
1258a008b906SSatish Balay 
12593a40ed3dSBarry Smith   PetscFunctionBegin;
12604b967eb1SSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
12614b967eb1SSatish Balay   if (rr) {
1262e1311b90SBarry Smith     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
126329bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
12644b967eb1SSatish Balay     /* Overlap communication with computation. */
126543a90d84SBarry Smith     ierr = VecScatterBegin(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx);CHKERRQ(ierr);
1266a008b906SSatish Balay   }
12674b967eb1SSatish Balay   if (ll) {
1268e1311b90SBarry Smith     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
126929bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1270f830108cSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,0);CHKERRQ(ierr);
12714b967eb1SSatish Balay   }
12724b967eb1SSatish Balay   /* scale  the diagonal block */
1273f830108cSBarry Smith   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
12744b967eb1SSatish Balay 
12754b967eb1SSatish Balay   if (rr) {
12764b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
127743a90d84SBarry Smith     ierr = VecScatterEnd(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx);CHKERRQ(ierr);
1278f830108cSBarry Smith     ierr = (*b->ops->diagonalscale)(b,0,aij->lvec);CHKERRQ(ierr);
12794b967eb1SSatish Balay   }
12804b967eb1SSatish Balay 
12813a40ed3dSBarry Smith   PetscFunctionReturn(0);
1282a008b906SSatish Balay }
1283a008b906SSatish Balay 
1284a008b906SSatish Balay 
12854a2ae208SSatish Balay #undef __FUNCT__
12864a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPIAIJ"
12878f6be9afSLois Curfman McInnes int MatPrintHelp_MPIAIJ(Mat A)
1288682d7d0cSBarry Smith {
1289682d7d0cSBarry Smith   Mat_MPIAIJ *a   = (Mat_MPIAIJ*)A->data;
12903a40ed3dSBarry Smith   int        ierr;
1291682d7d0cSBarry Smith 
12923a40ed3dSBarry Smith   PetscFunctionBegin;
12933a40ed3dSBarry Smith   if (!a->rank) {
12943a40ed3dSBarry Smith     ierr = MatPrintHelp_SeqAIJ(a->A);CHKERRQ(ierr);
12953a40ed3dSBarry Smith   }
12963a40ed3dSBarry Smith   PetscFunctionReturn(0);
1297682d7d0cSBarry Smith }
1298682d7d0cSBarry Smith 
12994a2ae208SSatish Balay #undef __FUNCT__
13004a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPIAIJ"
13018f6be9afSLois Curfman McInnes int MatGetBlockSize_MPIAIJ(Mat A,int *bs)
13025a838052SSatish Balay {
13033a40ed3dSBarry Smith   PetscFunctionBegin;
13045a838052SSatish Balay   *bs = 1;
13053a40ed3dSBarry Smith   PetscFunctionReturn(0);
13065a838052SSatish Balay }
13074a2ae208SSatish Balay #undef __FUNCT__
13084a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIAIJ"
13098f6be9afSLois Curfman McInnes int MatSetUnfactored_MPIAIJ(Mat A)
1310bb5a7306SBarry Smith {
1311bb5a7306SBarry Smith   Mat_MPIAIJ *a   = (Mat_MPIAIJ*)A->data;
1312bb5a7306SBarry Smith   int        ierr;
13133a40ed3dSBarry Smith 
13143a40ed3dSBarry Smith   PetscFunctionBegin;
1315bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
13163a40ed3dSBarry Smith   PetscFunctionReturn(0);
1317bb5a7306SBarry Smith }
1318bb5a7306SBarry Smith 
13194a2ae208SSatish Balay #undef __FUNCT__
13204a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIAIJ"
1321d4bb536fSBarry Smith int MatEqual_MPIAIJ(Mat A,Mat B,PetscTruth *flag)
1322d4bb536fSBarry Smith {
1323d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ*)B->data,*matA = (Mat_MPIAIJ*)A->data;
1324d4bb536fSBarry Smith   Mat        a,b,c,d;
1325d4bb536fSBarry Smith   PetscTruth flg;
1326d4bb536fSBarry Smith   int        ierr;
1327d4bb536fSBarry Smith 
13283a40ed3dSBarry Smith   PetscFunctionBegin;
1329273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPIAIJ,&flg);CHKERRQ(ierr);
1330273d9f13SBarry Smith   if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type");
1331d4bb536fSBarry Smith   a = matA->A; b = matA->B;
1332d4bb536fSBarry Smith   c = matB->A; d = matB->B;
1333d4bb536fSBarry Smith 
1334d4bb536fSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1335d4bb536fSBarry Smith   if (flg == PETSC_TRUE) {
1336d4bb536fSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
1337d4bb536fSBarry Smith   }
1338ca161407SBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
13393a40ed3dSBarry Smith   PetscFunctionReturn(0);
1340d4bb536fSBarry Smith }
1341d4bb536fSBarry Smith 
13424a2ae208SSatish Balay #undef __FUNCT__
13434a2ae208SSatish Balay #define __FUNCT__ "MatCopy_MPIAIJ"
1344cb5b572fSBarry Smith int MatCopy_MPIAIJ(Mat A,Mat B,MatStructure str)
1345cb5b572fSBarry Smith {
1346cb5b572fSBarry Smith   int        ierr;
1347cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1348cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
1349273d9f13SBarry Smith   PetscTruth flg;
1350cb5b572fSBarry Smith 
1351cb5b572fSBarry Smith   PetscFunctionBegin;
1352273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPIAIJ,&flg);CHKERRQ(ierr);
1353273d9f13SBarry Smith   if (str != SAME_NONZERO_PATTERN || !flg) {
1354cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
1355cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
1356cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
1357cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
1358cb5b572fSBarry Smith        then copying the submatrices */
1359cb5b572fSBarry Smith     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
1360cb5b572fSBarry Smith   } else {
1361cb5b572fSBarry Smith     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
1362cb5b572fSBarry Smith     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
1363cb5b572fSBarry Smith   }
1364cb5b572fSBarry Smith   PetscFunctionReturn(0);
1365cb5b572fSBarry Smith }
1366cb5b572fSBarry Smith 
13674a2ae208SSatish Balay #undef __FUNCT__
13684a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIAIJ"
1369273d9f13SBarry Smith int MatSetUpPreallocation_MPIAIJ(Mat A)
1370273d9f13SBarry Smith {
1371273d9f13SBarry Smith   int        ierr;
1372273d9f13SBarry Smith 
1373273d9f13SBarry Smith   PetscFunctionBegin;
1374273d9f13SBarry Smith   ierr =  MatMPIAIJSetPreallocation(A,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1375273d9f13SBarry Smith   PetscFunctionReturn(0);
1376273d9f13SBarry Smith }
1377273d9f13SBarry Smith 
1378ca44d042SBarry Smith EXTERN int MatDuplicate_MPIAIJ(Mat,MatDuplicateOption,Mat *);
1379ca44d042SBarry Smith EXTERN int MatIncreaseOverlap_MPIAIJ(Mat,int,IS *,int);
1380ca44d042SBarry Smith EXTERN int MatFDColoringCreate_MPIAIJ(Mat,ISColoring,MatFDColoring);
1381ca44d042SBarry Smith EXTERN int MatGetSubMatrices_MPIAIJ (Mat,int,IS *,IS *,MatReuse,Mat **);
1382ca44d042SBarry Smith EXTERN int MatGetSubMatrix_MPIAIJ (Mat,IS,IS,int,MatReuse,Mat *);
138387828ca2SBarry Smith #if !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_SINGLE)
1384b9617806SBarry Smith EXTERN int MatLUFactorSymbolic_MPIAIJ_TFS(Mat,IS,IS,MatLUInfo*,Mat*);
1385b9617806SBarry Smith #endif
138600e6dbe6SBarry Smith 
1387ac90fabeSBarry Smith #include "petscblaslapack.h"
1388ac90fabeSBarry Smith 
1389ac90fabeSBarry Smith #undef __FUNCT__
1390ac90fabeSBarry Smith #define __FUNCT__ "MatAXPY_MPIAIJ"
1391ac90fabeSBarry Smith int MatAXPY_MPIAIJ(PetscScalar *a,Mat X,Mat Y,MatStructure str)
1392ac90fabeSBarry Smith {
1393ac90fabeSBarry Smith   int        ierr,one;
1394ac90fabeSBarry Smith   Mat_MPIAIJ *xx  = (Mat_MPIAIJ *)X->data,*yy = (Mat_MPIAIJ *)Y->data;
1395ac90fabeSBarry Smith   Mat_SeqAIJ *x,*y;
1396ac90fabeSBarry Smith 
1397ac90fabeSBarry Smith   PetscFunctionBegin;
1398ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
1399ac90fabeSBarry Smith     x  = (Mat_SeqAIJ *)xx->A->data;
1400ac90fabeSBarry Smith     y  = (Mat_SeqAIJ *)yy->A->data;
1401ac90fabeSBarry Smith     BLaxpy_(&x->nz,a,x->a,&one,y->a,&one);
1402ac90fabeSBarry Smith     x  = (Mat_SeqAIJ *)xx->B->data;
1403ac90fabeSBarry Smith     y  = (Mat_SeqAIJ *)yy->B->data;
1404ac90fabeSBarry Smith     BLaxpy_(&x->nz,a,x->a,&one,y->a,&one);
1405ac90fabeSBarry Smith   } else {
1406ac90fabeSBarry Smith     ierr = MatAXPY_Basic(a,X,Y,str);CHKERRQ(ierr);
1407ac90fabeSBarry Smith   }
1408ac90fabeSBarry Smith   PetscFunctionReturn(0);
1409ac90fabeSBarry Smith }
1410ac90fabeSBarry Smith 
14118a729477SBarry Smith /* -------------------------------------------------------------------*/
1412cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
1413cda55fadSBarry Smith        MatGetRow_MPIAIJ,
1414cda55fadSBarry Smith        MatRestoreRow_MPIAIJ,
1415cda55fadSBarry Smith        MatMult_MPIAIJ,
1416cda55fadSBarry Smith        MatMultAdd_MPIAIJ,
14177c922b88SBarry Smith        MatMultTranspose_MPIAIJ,
14187c922b88SBarry Smith        MatMultTransposeAdd_MPIAIJ,
1419cda55fadSBarry Smith        0,
1420cda55fadSBarry Smith        0,
1421cda55fadSBarry Smith        0,
1422cda55fadSBarry Smith        0,
1423cda55fadSBarry Smith        0,
1424cda55fadSBarry Smith        0,
142544a69424SLois Curfman McInnes        MatRelax_MPIAIJ,
1426b7c46309SBarry Smith        MatTranspose_MPIAIJ,
1427cda55fadSBarry Smith        MatGetInfo_MPIAIJ,
1428cda55fadSBarry Smith        MatEqual_MPIAIJ,
1429cda55fadSBarry Smith        MatGetDiagonal_MPIAIJ,
1430cda55fadSBarry Smith        MatDiagonalScale_MPIAIJ,
1431cda55fadSBarry Smith        MatNorm_MPIAIJ,
1432cda55fadSBarry Smith        MatAssemblyBegin_MPIAIJ,
1433cda55fadSBarry Smith        MatAssemblyEnd_MPIAIJ,
14341eb62cbbSBarry Smith        0,
1435cda55fadSBarry Smith        MatSetOption_MPIAIJ,
1436cda55fadSBarry Smith        MatZeroEntries_MPIAIJ,
1437cda55fadSBarry Smith        MatZeroRows_MPIAIJ,
143887828ca2SBarry Smith #if !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_SINGLE)
1439b9617806SBarry Smith        MatLUFactorSymbolic_MPIAIJ_TFS,
1440b9617806SBarry Smith #else
1441cda55fadSBarry Smith        0,
1442b9617806SBarry Smith #endif
1443cda55fadSBarry Smith        0,
1444cda55fadSBarry Smith        0,
1445cda55fadSBarry Smith        0,
1446273d9f13SBarry Smith        MatSetUpPreallocation_MPIAIJ,
1447cda55fadSBarry Smith        0,
1448cda55fadSBarry Smith        0,
1449cda55fadSBarry Smith        0,
1450cda55fadSBarry Smith        0,
14512e8a6d31SBarry Smith        MatDuplicate_MPIAIJ,
1452cda55fadSBarry Smith        0,
1453cda55fadSBarry Smith        0,
1454cda55fadSBarry Smith        0,
1455cda55fadSBarry Smith        0,
1456ac90fabeSBarry Smith        MatAXPY_MPIAIJ,
1457cda55fadSBarry Smith        MatGetSubMatrices_MPIAIJ,
1458cda55fadSBarry Smith        MatIncreaseOverlap_MPIAIJ,
1459cda55fadSBarry Smith        MatGetValues_MPIAIJ,
1460cb5b572fSBarry Smith        MatCopy_MPIAIJ,
1461052efed2SBarry Smith        MatPrintHelp_MPIAIJ,
1462cda55fadSBarry Smith        MatScale_MPIAIJ,
1463cda55fadSBarry Smith        0,
1464cda55fadSBarry Smith        0,
1465cda55fadSBarry Smith        0,
1466cda55fadSBarry Smith        MatGetBlockSize_MPIAIJ,
1467cda55fadSBarry Smith        0,
1468cda55fadSBarry Smith        0,
1469cda55fadSBarry Smith        0,
1470cda55fadSBarry Smith        0,
1471cda55fadSBarry Smith        MatFDColoringCreate_MPIAIJ,
1472cda55fadSBarry Smith        0,
1473cda55fadSBarry Smith        MatSetUnfactored_MPIAIJ,
1474cda55fadSBarry Smith        0,
1475cda55fadSBarry Smith        0,
1476cda55fadSBarry Smith        MatGetSubMatrix_MPIAIJ,
1477e03a110bSBarry Smith        MatDestroy_MPIAIJ,
1478e03a110bSBarry Smith        MatView_MPIAIJ,
14798a124369SBarry Smith        MatGetPetscMaps_Petsc,
1480a2243be0SBarry Smith        0,
1481a2243be0SBarry Smith        0,
1482a2243be0SBarry Smith        0,
1483a2243be0SBarry Smith        0,
1484a2243be0SBarry Smith        0,
1485a2243be0SBarry Smith        0,
1486a2243be0SBarry Smith        0,
1487a2243be0SBarry Smith        0,
1488a2243be0SBarry Smith        MatSetColoring_MPIAIJ,
1489779c1a83SBarry Smith        MatSetValuesAdic_MPIAIJ,
1490779c1a83SBarry Smith        MatSetValuesAdifor_MPIAIJ
1491a2243be0SBarry Smith };
149236ce4990SBarry Smith 
14932e8a6d31SBarry Smith /* ----------------------------------------------------------------------------------------*/
14942e8a6d31SBarry Smith 
1495fb2e594dSBarry Smith EXTERN_C_BEGIN
14964a2ae208SSatish Balay #undef __FUNCT__
14974a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIAIJ"
14982e8a6d31SBarry Smith int MatStoreValues_MPIAIJ(Mat mat)
14992e8a6d31SBarry Smith {
15002e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
15012e8a6d31SBarry Smith   int        ierr;
15022e8a6d31SBarry Smith 
15032e8a6d31SBarry Smith   PetscFunctionBegin;
15042e8a6d31SBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
15052e8a6d31SBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
15062e8a6d31SBarry Smith   PetscFunctionReturn(0);
15072e8a6d31SBarry Smith }
1508fb2e594dSBarry Smith EXTERN_C_END
15092e8a6d31SBarry Smith 
1510fb2e594dSBarry Smith EXTERN_C_BEGIN
15114a2ae208SSatish Balay #undef __FUNCT__
15124a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIAIJ"
15132e8a6d31SBarry Smith int MatRetrieveValues_MPIAIJ(Mat mat)
15142e8a6d31SBarry Smith {
15152e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
15162e8a6d31SBarry Smith   int        ierr;
15172e8a6d31SBarry Smith 
15182e8a6d31SBarry Smith   PetscFunctionBegin;
15192e8a6d31SBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
15202e8a6d31SBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
15212e8a6d31SBarry Smith   PetscFunctionReturn(0);
15222e8a6d31SBarry Smith }
1523fb2e594dSBarry Smith EXTERN_C_END
15248a729477SBarry Smith 
1525e090d566SSatish Balay #include "petscpc.h"
152627508adbSBarry Smith EXTERN_C_BEGIN
1527ca44d042SBarry Smith EXTERN int MatGetDiagonalBlock_MPIAIJ(Mat,PetscTruth *,MatReuse,Mat *);
152827508adbSBarry Smith EXTERN_C_END
152927508adbSBarry Smith 
1530273d9f13SBarry Smith EXTERN_C_BEGIN
15314a2ae208SSatish Balay #undef __FUNCT__
15324a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIAIJ"
1533273d9f13SBarry Smith int MatCreate_MPIAIJ(Mat B)
15348a729477SBarry Smith {
153544cd7ae7SLois Curfman McInnes   Mat_MPIAIJ *b;
1536f1af5d2fSBarry Smith   int        ierr,i,size;
1537416022c9SBarry Smith 
15383a40ed3dSBarry Smith   PetscFunctionBegin;
1539273d9f13SBarry Smith   ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr);
15401d55c564SBarry Smith 
1541b0a32e0cSBarry Smith   ierr            = PetscNew(Mat_MPIAIJ,&b);CHKERRQ(ierr);
1542b0a32e0cSBarry Smith   B->data         = (void*)b;
1543549d3d68SSatish Balay   ierr            = PetscMemzero(b,sizeof(Mat_MPIAIJ));CHKERRQ(ierr);
1544549d3d68SSatish Balay   ierr            = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
154544cd7ae7SLois Curfman McInnes   B->factor       = 0;
154644cd7ae7SLois Curfman McInnes   B->assembled    = PETSC_FALSE;
154790f02eecSBarry Smith   B->mapping      = 0;
1548d6dfbf8fSBarry Smith 
154947794344SBarry Smith   B->insertmode      = NOT_SET_VALUES;
15509eb4d147SSatish Balay   b->size            = size;
1551273d9f13SBarry Smith   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
15521eb62cbbSBarry Smith 
1553273d9f13SBarry Smith   ierr = PetscSplitOwnership(B->comm,&B->m,&B->M);CHKERRQ(ierr);
1554273d9f13SBarry Smith   ierr = PetscSplitOwnership(B->comm,&B->n,&B->N);CHKERRQ(ierr);
15551eb62cbbSBarry Smith 
1556c7fcc2eaSBarry Smith   /* the information in the maps duplicates the information computed below, eventually
1557c7fcc2eaSBarry Smith      we should remove the duplicate information that is not contained in the maps */
15588a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
15598a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr);
1560c7fcc2eaSBarry Smith 
15611eb62cbbSBarry Smith   /* build local table of row and column ownerships */
1562b0a32e0cSBarry Smith   ierr = PetscMalloc(2*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr);
1563b0a32e0cSBarry Smith   PetscLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIAIJ));
1564603f58a4SSatish Balay   b->cowners = b->rowners + b->size + 2;
1565273d9f13SBarry Smith   ierr = MPI_Allgather(&B->m,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
156644cd7ae7SLois Curfman McInnes   b->rowners[0] = 0;
156744cd7ae7SLois Curfman McInnes   for (i=2; i<=b->size; i++) {
156844cd7ae7SLois Curfman McInnes     b->rowners[i] += b->rowners[i-1];
15698a729477SBarry Smith   }
157044cd7ae7SLois Curfman McInnes   b->rstart = b->rowners[b->rank];
157144cd7ae7SLois Curfman McInnes   b->rend   = b->rowners[b->rank+1];
1572273d9f13SBarry Smith   ierr = MPI_Allgather(&B->n,1,MPI_INT,b->cowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
157344cd7ae7SLois Curfman McInnes   b->cowners[0] = 0;
157444cd7ae7SLois Curfman McInnes   for (i=2; i<=b->size; i++) {
157544cd7ae7SLois Curfman McInnes     b->cowners[i] += b->cowners[i-1];
15768a729477SBarry Smith   }
157744cd7ae7SLois Curfman McInnes   b->cstart = b->cowners[b->rank];
157844cd7ae7SLois Curfman McInnes   b->cend   = b->cowners[b->rank+1];
15798a729477SBarry Smith 
15801eb62cbbSBarry Smith   /* build cache for off array entries formed */
15817e2c5f70SBarry Smith   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
15827c922b88SBarry Smith   b->donotstash  = PETSC_FALSE;
158344cd7ae7SLois Curfman McInnes   b->colmap      = 0;
158444cd7ae7SLois Curfman McInnes   b->garray      = 0;
15857c922b88SBarry Smith   b->roworiented = PETSC_TRUE;
15868a729477SBarry Smith 
15871eb62cbbSBarry Smith   /* stuff used for matrix vector multiply */
15887c922b88SBarry Smith   b->lvec      = PETSC_NULL;
15897c922b88SBarry Smith   b->Mvctx     = PETSC_NULL;
15908a729477SBarry Smith 
15917a0afa10SBarry Smith   /* stuff for MatGetRow() */
159244cd7ae7SLois Curfman McInnes   b->rowindices   = 0;
159344cd7ae7SLois Curfman McInnes   b->rowvalues    = 0;
159444cd7ae7SLois Curfman McInnes   b->getrowactive = PETSC_FALSE;
15951a8d6bc9SBarry Smith 
1596f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
15972e8a6d31SBarry Smith                                      "MatStoreValues_MPIAIJ",
15980c97f09dSSatish Balay                                      MatStoreValues_MPIAIJ);CHKERRQ(ierr);
1599f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
16002e8a6d31SBarry Smith                                      "MatRetrieveValues_MPIAIJ",
16010c97f09dSSatish Balay                                      MatRetrieveValues_MPIAIJ);CHKERRQ(ierr);
1602f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
16035ef9f2a5SBarry Smith                                      "MatGetDiagonalBlock_MPIAIJ",
16040c97f09dSSatish Balay                                      MatGetDiagonalBlock_MPIAIJ);CHKERRQ(ierr);
16059b9367d5SHong Zhang 
16063a40ed3dSBarry Smith   PetscFunctionReturn(0);
1607d6dfbf8fSBarry Smith }
1608273d9f13SBarry Smith EXTERN_C_END
1609c74985f6SBarry Smith 
16104a2ae208SSatish Balay #undef __FUNCT__
16114a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIAIJ"
16122e8a6d31SBarry Smith int MatDuplicate_MPIAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
1613d6dfbf8fSBarry Smith {
1614d6dfbf8fSBarry Smith   Mat        mat;
1615416022c9SBarry Smith   Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ*)matin->data;
161616d6aa21SSatish Balay   int        ierr;
1617d6dfbf8fSBarry Smith 
16183a40ed3dSBarry Smith   PetscFunctionBegin;
1619416022c9SBarry Smith   *newmat       = 0;
1620273d9f13SBarry Smith   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
1621273d9f13SBarry Smith   ierr = MatSetType(mat,MATMPIAIJ);CHKERRQ(ierr);
1622273d9f13SBarry Smith   a    = (Mat_MPIAIJ*)mat->data;
1623549d3d68SSatish Balay   ierr              = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1624d6dfbf8fSBarry Smith   mat->factor       = matin->factor;
1625c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1626e7641de0SSatish Balay   mat->insertmode   = NOT_SET_VALUES;
1627273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
1628d6dfbf8fSBarry Smith 
1629416022c9SBarry Smith   a->rstart       = oldmat->rstart;
1630416022c9SBarry Smith   a->rend         = oldmat->rend;
1631416022c9SBarry Smith   a->cstart       = oldmat->cstart;
1632416022c9SBarry Smith   a->cend         = oldmat->cend;
163317699dbbSLois Curfman McInnes   a->size         = oldmat->size;
163417699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
1635e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
1636e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
1637e7641de0SSatish Balay   a->rowindices   = 0;
1638bcd2baecSBarry Smith   a->rowvalues    = 0;
1639bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
1640d6dfbf8fSBarry Smith 
1641549d3d68SSatish Balay   ierr       = PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int));CHKERRQ(ierr);
16428798bf22SSatish Balay   ierr       = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
16432ee70a88SLois Curfman McInnes   if (oldmat->colmap) {
1644aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
16450f5bd95cSBarry Smith     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
1646b1fc9764SSatish Balay #else
1647b0a32e0cSBarry Smith     ierr = PetscMalloc((mat->N)*sizeof(int),&a->colmap);CHKERRQ(ierr);
1648b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,(mat->N)*sizeof(int));
1649273d9f13SBarry Smith     ierr      = PetscMemcpy(a->colmap,oldmat->colmap,(mat->N)*sizeof(int));CHKERRQ(ierr);
1650b1fc9764SSatish Balay #endif
1651416022c9SBarry Smith   } else a->colmap = 0;
16523f41c07dSBarry Smith   if (oldmat->garray) {
165316d6aa21SSatish Balay     int len;
1654273d9f13SBarry Smith     len  = oldmat->B->n;
1655b0a32e0cSBarry Smith     ierr = PetscMalloc((len+1)*sizeof(int),&a->garray);CHKERRQ(ierr);
1656b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(int));
1657549d3d68SSatish Balay     if (len) { ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); }
1658416022c9SBarry Smith   } else a->garray = 0;
1659d6dfbf8fSBarry Smith 
1660416022c9SBarry Smith   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
1661b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
1662a56f8943SBarry Smith   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
1663b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
16642e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
1665b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
16662e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
1667b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
1668b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr);
16698a729477SBarry Smith   *newmat = mat;
16703a40ed3dSBarry Smith   PetscFunctionReturn(0);
16718a729477SBarry Smith }
1672416022c9SBarry Smith 
1673e090d566SSatish Balay #include "petscsys.h"
1674416022c9SBarry Smith 
1675273d9f13SBarry Smith EXTERN_C_BEGIN
16764a2ae208SSatish Balay #undef __FUNCT__
16774a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIAIJ"
1678b0a32e0cSBarry Smith int MatLoad_MPIAIJ(PetscViewer viewer,MatType type,Mat *newmat)
1679416022c9SBarry Smith {
1680d65a2f8fSBarry Smith   Mat          A;
168187828ca2SBarry Smith   PetscScalar  *vals,*svals;
168219bcc07fSBarry Smith   MPI_Comm     comm = ((PetscObject)viewer)->comm;
1683416022c9SBarry Smith   MPI_Status   status;
16843a40ed3dSBarry Smith   int          i,nz,ierr,j,rstart,rend,fd;
168517699dbbSLois Curfman McInnes   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols;
1686d65a2f8fSBarry Smith   int          *ourlens,*sndcounts = 0,*procsnz = 0,*offlens,jj,*mycols,*smycols;
1687b362ba68SBarry Smith   int          tag = ((PetscObject)viewer)->tag,cend,cstart,n;
1688416022c9SBarry Smith 
16893a40ed3dSBarry Smith   PetscFunctionBegin;
16901dab6e02SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
16911dab6e02SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
169217699dbbSLois Curfman McInnes   if (!rank) {
1693b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
16940752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
1695552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
1696d64ed03dSBarry Smith     if (header[3] < 0) {
169729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix in special format on disk, cannot load as MPIAIJ");
1698d64ed03dSBarry Smith     }
16996c5fab8fSBarry Smith   }
17006c5fab8fSBarry Smith 
1701ca161407SBarry Smith   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
1702416022c9SBarry Smith   M = header[1]; N = header[2];
1703416022c9SBarry Smith   /* determine ownership of all rows */
170417699dbbSLois Curfman McInnes   m = M/size + ((M % size) > rank);
1705b0a32e0cSBarry Smith   ierr = PetscMalloc((size+2)*sizeof(int),&rowners);CHKERRQ(ierr);
1706ca161407SBarry Smith   ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
1707416022c9SBarry Smith   rowners[0] = 0;
170817699dbbSLois Curfman McInnes   for (i=2; i<=size; i++) {
1709416022c9SBarry Smith     rowners[i] += rowners[i-1];
1710416022c9SBarry Smith   }
171117699dbbSLois Curfman McInnes   rstart = rowners[rank];
171217699dbbSLois Curfman McInnes   rend   = rowners[rank+1];
1713416022c9SBarry Smith 
1714416022c9SBarry Smith   /* distribute row lengths to all processors */
1715b0a32e0cSBarry Smith   ierr    = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&ourlens);CHKERRQ(ierr);
1716416022c9SBarry Smith   offlens = ourlens + (rend-rstart);
171717699dbbSLois Curfman McInnes   if (!rank) {
1718b0a32e0cSBarry Smith     ierr = PetscMalloc(M*sizeof(int),&rowlengths);CHKERRQ(ierr);
17190752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
1720b0a32e0cSBarry Smith     ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr);
172117699dbbSLois Curfman McInnes     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
1722ca161407SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr);
1723606d414cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
17243a40ed3dSBarry Smith   } else {
1725ca161407SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr);
1726416022c9SBarry Smith   }
1727416022c9SBarry Smith 
172817699dbbSLois Curfman McInnes   if (!rank) {
1729416022c9SBarry Smith     /* calculate the number of nonzeros on each processor */
1730b0a32e0cSBarry Smith     ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr);
1731549d3d68SSatish Balay     ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
173217699dbbSLois Curfman McInnes     for (i=0; i<size; i++) {
1733416022c9SBarry Smith       for (j=rowners[i]; j< rowners[i+1]; j++) {
1734416022c9SBarry Smith         procsnz[i] += rowlengths[j];
1735416022c9SBarry Smith       }
1736416022c9SBarry Smith     }
1737606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
1738416022c9SBarry Smith 
1739416022c9SBarry Smith     /* determine max buffer needed and allocate it */
1740416022c9SBarry Smith     maxnz = 0;
174117699dbbSLois Curfman McInnes     for (i=0; i<size; i++) {
17420452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
1743416022c9SBarry Smith     }
1744b0a32e0cSBarry Smith     ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr);
1745416022c9SBarry Smith 
1746416022c9SBarry Smith     /* read in my part of the matrix column indices  */
1747416022c9SBarry Smith     nz   = procsnz[0];
1748b0a32e0cSBarry Smith     ierr = PetscMalloc(nz*sizeof(int),&mycols);CHKERRQ(ierr);
17490752156aSBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
1750d65a2f8fSBarry Smith 
1751d65a2f8fSBarry Smith     /* read in every one elses and ship off */
175217699dbbSLois Curfman McInnes     for (i=1; i<size; i++) {
1753d65a2f8fSBarry Smith       nz   = procsnz[i];
17540752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
1755ca161407SBarry Smith       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
1756d65a2f8fSBarry Smith     }
1757606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
17583a40ed3dSBarry Smith   } else {
1759416022c9SBarry Smith     /* determine buffer space needed for message */
1760416022c9SBarry Smith     nz = 0;
1761416022c9SBarry Smith     for (i=0; i<m; i++) {
1762416022c9SBarry Smith       nz += ourlens[i];
1763416022c9SBarry Smith     }
1764b0a32e0cSBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(int),&mycols);CHKERRQ(ierr);
1765416022c9SBarry Smith 
1766416022c9SBarry Smith     /* receive message of column indices*/
1767ca161407SBarry Smith     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
1768ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
176929bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
1770416022c9SBarry Smith   }
1771416022c9SBarry Smith 
1772b362ba68SBarry Smith   /* determine column ownership if matrix is not square */
1773b362ba68SBarry Smith   if (N != M) {
1774b362ba68SBarry Smith     n      = N/size + ((N % size) > rank);
1775b362ba68SBarry Smith     ierr   = MPI_Scan(&n,&cend,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
1776b362ba68SBarry Smith     cstart = cend - n;
1777b362ba68SBarry Smith   } else {
1778b362ba68SBarry Smith     cstart = rstart;
1779b362ba68SBarry Smith     cend   = rend;
1780fb2e594dSBarry Smith     n      = cend - cstart;
1781b362ba68SBarry Smith   }
1782b362ba68SBarry Smith 
1783416022c9SBarry Smith   /* loop over local rows, determining number of off diagonal entries */
1784549d3d68SSatish Balay   ierr = PetscMemzero(offlens,m*sizeof(int));CHKERRQ(ierr);
1785416022c9SBarry Smith   jj = 0;
1786416022c9SBarry Smith   for (i=0; i<m; i++) {
1787416022c9SBarry Smith     for (j=0; j<ourlens[i]; j++) {
1788b362ba68SBarry Smith       if (mycols[jj] < cstart || mycols[jj] >= cend) offlens[i]++;
1789416022c9SBarry Smith       jj++;
1790416022c9SBarry Smith     }
1791416022c9SBarry Smith   }
1792d65a2f8fSBarry Smith 
1793d65a2f8fSBarry Smith   /* create our matrix */
1794416022c9SBarry Smith   for (i=0; i<m; i++) {
1795416022c9SBarry Smith     ourlens[i] -= offlens[i];
1796416022c9SBarry Smith   }
1797b362ba68SBarry Smith   ierr = MatCreateMPIAIJ(comm,m,n,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr);
1798d65a2f8fSBarry Smith   A = *newmat;
1799fb2e594dSBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
1800d65a2f8fSBarry Smith   for (i=0; i<m; i++) {
1801d65a2f8fSBarry Smith     ourlens[i] += offlens[i];
1802d65a2f8fSBarry Smith   }
1803416022c9SBarry Smith 
180417699dbbSLois Curfman McInnes   if (!rank) {
180587828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
1806416022c9SBarry Smith 
1807416022c9SBarry Smith     /* read in my part of the matrix numerical values  */
1808416022c9SBarry Smith     nz   = procsnz[0];
18090752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1810d65a2f8fSBarry Smith 
1811d65a2f8fSBarry Smith     /* insert into matrix */
1812d65a2f8fSBarry Smith     jj      = rstart;
1813d65a2f8fSBarry Smith     smycols = mycols;
1814d65a2f8fSBarry Smith     svals   = vals;
1815d65a2f8fSBarry Smith     for (i=0; i<m; i++) {
1816d65a2f8fSBarry Smith       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1817d65a2f8fSBarry Smith       smycols += ourlens[i];
1818d65a2f8fSBarry Smith       svals   += ourlens[i];
1819d65a2f8fSBarry Smith       jj++;
1820416022c9SBarry Smith     }
1821416022c9SBarry Smith 
1822d65a2f8fSBarry Smith     /* read in other processors and ship out */
182317699dbbSLois Curfman McInnes     for (i=1; i<size; i++) {
1824416022c9SBarry Smith       nz   = procsnz[i];
18250752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1826ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
1827416022c9SBarry Smith     }
1828606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
18293a40ed3dSBarry Smith   } else {
1830d65a2f8fSBarry Smith     /* receive numeric values */
183187828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
1832416022c9SBarry Smith 
1833d65a2f8fSBarry Smith     /* receive message of values*/
1834ca161407SBarry Smith     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
1835ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
183629bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
1837d65a2f8fSBarry Smith 
1838d65a2f8fSBarry Smith     /* insert into matrix */
1839d65a2f8fSBarry Smith     jj      = rstart;
1840d65a2f8fSBarry Smith     smycols = mycols;
1841d65a2f8fSBarry Smith     svals   = vals;
1842d65a2f8fSBarry Smith     for (i=0; i<m; i++) {
1843d65a2f8fSBarry Smith       ierr     = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1844d65a2f8fSBarry Smith       smycols += ourlens[i];
1845d65a2f8fSBarry Smith       svals   += ourlens[i];
1846d65a2f8fSBarry Smith       jj++;
1847d65a2f8fSBarry Smith     }
1848d65a2f8fSBarry Smith   }
1849606d414cSSatish Balay   ierr = PetscFree(ourlens);CHKERRQ(ierr);
1850606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
1851606d414cSSatish Balay   ierr = PetscFree(mycols);CHKERRQ(ierr);
1852606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
1853d65a2f8fSBarry Smith 
18546d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18556d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18563a40ed3dSBarry Smith   PetscFunctionReturn(0);
1857416022c9SBarry Smith }
1858273d9f13SBarry Smith EXTERN_C_END
1859a0ff6018SBarry Smith 
18604a2ae208SSatish Balay #undef __FUNCT__
18614a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIAIJ"
1862a0ff6018SBarry Smith /*
186329da9460SBarry Smith     Not great since it makes two copies of the submatrix, first an SeqAIJ
186429da9460SBarry Smith   in local and then by concatenating the local matrices the end result.
186529da9460SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIAIJ()
1866a0ff6018SBarry Smith */
18677b2a1423SBarry Smith int MatGetSubMatrix_MPIAIJ(Mat mat,IS isrow,IS iscol,int csize,MatReuse call,Mat *newmat)
1868a0ff6018SBarry Smith {
186900e6dbe6SBarry Smith   int          ierr,i,m,n,rstart,row,rend,nz,*cwork,size,rank,j;
18707e2c5f70SBarry Smith   int          *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend;
1871fee21e36SBarry Smith   Mat          *local,M,Mreuse;
187287828ca2SBarry Smith   PetscScalar  *vwork,*aa;
187300e6dbe6SBarry Smith   MPI_Comm     comm = mat->comm;
187400e6dbe6SBarry Smith   Mat_SeqAIJ   *aij;
18757e2c5f70SBarry Smith 
1876a0ff6018SBarry Smith 
1877a0ff6018SBarry Smith   PetscFunctionBegin;
18781dab6e02SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
18791dab6e02SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
188000e6dbe6SBarry Smith 
1881fee21e36SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
1882fee21e36SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr);
188329bbc08cSBarry Smith     if (!Mreuse) SETERRQ(1,"Submatrix passed in was not used before, cannot reuse");
1884fee21e36SBarry Smith     local = &Mreuse;
1885fee21e36SBarry Smith     ierr  = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr);
1886fee21e36SBarry Smith   } else {
1887a0ff6018SBarry Smith     ierr   = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr);
1888fee21e36SBarry Smith     Mreuse = *local;
1889606d414cSSatish Balay     ierr   = PetscFree(local);CHKERRQ(ierr);
1890fee21e36SBarry Smith   }
1891a0ff6018SBarry Smith 
1892a0ff6018SBarry Smith   /*
1893a0ff6018SBarry Smith       m - number of local rows
1894a0ff6018SBarry Smith       n - number of columns (same on all processors)
1895a0ff6018SBarry Smith       rstart - first row in new global matrix generated
1896a0ff6018SBarry Smith   */
1897fee21e36SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
1898a0ff6018SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
1899fee21e36SBarry Smith     aij = (Mat_SeqAIJ*)(Mreuse)->data;
190029bbc08cSBarry Smith     if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,"No support for index shifted matrix");
190100e6dbe6SBarry Smith     ii  = aij->i;
190200e6dbe6SBarry Smith     jj  = aij->j;
190300e6dbe6SBarry Smith 
1904a0ff6018SBarry Smith     /*
190500e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
190600e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
1907a0ff6018SBarry Smith     */
190800e6dbe6SBarry Smith 
190900e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
19106a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
191100e6dbe6SBarry Smith       nlocal = n/size + ((n % size) > rank);
19126a6a5d1dSBarry Smith     } else {
19136a6a5d1dSBarry Smith       nlocal = csize;
19146a6a5d1dSBarry Smith     }
1915ca161407SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
191600e6dbe6SBarry Smith     rstart = rend - nlocal;
19176a6a5d1dSBarry Smith     if (rank == size - 1 && rend != n) {
191829bbc08cSBarry Smith       SETERRQ(1,"Local column sizes do not add up to total number of columns");
19196a6a5d1dSBarry Smith     }
192000e6dbe6SBarry Smith 
192100e6dbe6SBarry Smith     /* next, compute all the lengths */
1922b0a32e0cSBarry Smith     ierr  = PetscMalloc((2*m+1)*sizeof(int),&dlens);CHKERRQ(ierr);
192300e6dbe6SBarry Smith     olens = dlens + m;
192400e6dbe6SBarry Smith     for (i=0; i<m; i++) {
192500e6dbe6SBarry Smith       jend = ii[i+1] - ii[i];
192600e6dbe6SBarry Smith       olen = 0;
192700e6dbe6SBarry Smith       dlen = 0;
192800e6dbe6SBarry Smith       for (j=0; j<jend; j++) {
192900e6dbe6SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
193000e6dbe6SBarry Smith         else dlen++;
193100e6dbe6SBarry Smith         jj++;
193200e6dbe6SBarry Smith       }
193300e6dbe6SBarry Smith       olens[i] = olen;
193400e6dbe6SBarry Smith       dlens[i] = dlen;
193500e6dbe6SBarry Smith     }
19362d207970SBarry Smith     ierr = MatCreateMPIAIJ(comm,m,nlocal,PETSC_DECIDE,n,0,dlens,0,olens,&M);CHKERRQ(ierr);
1937606d414cSSatish Balay     ierr = PetscFree(dlens);CHKERRQ(ierr);
1938a0ff6018SBarry Smith   } else {
1939a0ff6018SBarry Smith     int ml,nl;
1940a0ff6018SBarry Smith 
1941a0ff6018SBarry Smith     M = *newmat;
1942a0ff6018SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
194329bbc08cSBarry Smith     if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
1944a0ff6018SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
1945c48de900SBarry Smith     /*
1946c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
1947c48de900SBarry Smith        rather than the slower MatSetValues().
1948c48de900SBarry Smith     */
1949c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
1950c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
1951a0ff6018SBarry Smith   }
1952a0ff6018SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
1953fee21e36SBarry Smith   aij = (Mat_SeqAIJ*)(Mreuse)->data;
195429bbc08cSBarry Smith   if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,"No support for index shifted matrix");
195500e6dbe6SBarry Smith   ii  = aij->i;
195600e6dbe6SBarry Smith   jj  = aij->j;
195700e6dbe6SBarry Smith   aa  = aij->a;
1958a0ff6018SBarry Smith   for (i=0; i<m; i++) {
1959a0ff6018SBarry Smith     row   = rstart + i;
196000e6dbe6SBarry Smith     nz    = ii[i+1] - ii[i];
196100e6dbe6SBarry Smith     cwork = jj;     jj += nz;
196200e6dbe6SBarry Smith     vwork = aa;     aa += nz;
19638c638d02SBarry Smith     ierr = MatSetValues_MPIAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
1964a0ff6018SBarry Smith   }
1965a0ff6018SBarry Smith 
1966a0ff6018SBarry Smith   ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1967a0ff6018SBarry Smith   ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1968a0ff6018SBarry Smith   *newmat = M;
1969fee21e36SBarry Smith 
1970fee21e36SBarry Smith   /* save submatrix used in processor for next request */
1971fee21e36SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
1972fee21e36SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
1973fee21e36SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
1974fee21e36SBarry Smith   }
1975fee21e36SBarry Smith 
1976a0ff6018SBarry Smith   PetscFunctionReturn(0);
1977a0ff6018SBarry Smith }
1978273d9f13SBarry Smith 
19794a2ae208SSatish Balay #undef __FUNCT__
19804a2ae208SSatish Balay #define __FUNCT__ "MatMPIAIJSetPreallocation"
1981273d9f13SBarry Smith /*@C
1982273d9f13SBarry Smith    MatMPIAIJSetPreallocation - Creates a sparse parallel matrix in AIJ format
1983273d9f13SBarry Smith    (the default parallel PETSc format).  For good matrix assembly performance
1984273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
1985273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
1986273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
1987273d9f13SBarry Smith 
1988273d9f13SBarry Smith    Collective on MPI_Comm
1989273d9f13SBarry Smith 
1990273d9f13SBarry Smith    Input Parameters:
1991273d9f13SBarry Smith +  A - the matrix
1992273d9f13SBarry Smith .  d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
1993273d9f13SBarry Smith            (same value is used for all local rows)
1994273d9f13SBarry Smith .  d_nnz - array containing the number of nonzeros in the various rows of the
1995273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
1996273d9f13SBarry Smith            or PETSC_NULL, if d_nz is used to specify the nonzero structure.
1997273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
1998273d9f13SBarry Smith            You must leave room for the diagonal entry even if it is zero.
1999273d9f13SBarry Smith .  o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
2000273d9f13SBarry Smith            submatrix (same value is used for all local rows).
2001273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various rows of the
2002273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
2003273d9f13SBarry Smith            each row) or PETSC_NULL, if o_nz is used to specify the nonzero
2004273d9f13SBarry Smith            structure. The size of this array is equal to the number
2005273d9f13SBarry Smith            of local rows, i.e 'm'.
2006273d9f13SBarry Smith 
2007273d9f13SBarry Smith    The AIJ format (also called the Yale sparse matrix format or
2008273d9f13SBarry Smith    compressed row storage), is fully compatible with standard Fortran 77
2009273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
2010273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users manual for details.
2011273d9f13SBarry Smith 
2012273d9f13SBarry Smith    The user MUST specify either the local or global matrix dimensions
2013273d9f13SBarry Smith    (possibly both).
2014273d9f13SBarry Smith 
2015273d9f13SBarry Smith    The parallel matrix is partitioned such that the first m0 rows belong to
2016273d9f13SBarry Smith    process 0, the next m1 rows belong to process 1, the next m2 rows belong
2017273d9f13SBarry Smith    to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
2018273d9f13SBarry Smith 
2019273d9f13SBarry Smith    The DIAGONAL portion of the local submatrix of a processor can be defined
2020273d9f13SBarry Smith    as the submatrix which is obtained by extraction the part corresponding
2021273d9f13SBarry Smith    to the rows r1-r2 and columns r1-r2 of the global matrix, where r1 is the
2022273d9f13SBarry Smith    first row that belongs to the processor, and r2 is the last row belonging
2023273d9f13SBarry Smith    to the this processor. This is a square mxm matrix. The remaining portion
2024273d9f13SBarry Smith    of the local submatrix (mxN) constitute the OFF-DIAGONAL portion.
2025273d9f13SBarry Smith 
2026273d9f13SBarry Smith    If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored.
2027273d9f13SBarry Smith 
2028273d9f13SBarry Smith    By default, this format uses inodes (identical nodes) when possible.
2029273d9f13SBarry Smith    We search for consecutive rows with the same nonzero structure, thereby
2030273d9f13SBarry Smith    reusing matrix information to achieve increased efficiency.
2031273d9f13SBarry Smith 
2032273d9f13SBarry Smith    Options Database Keys:
2033273d9f13SBarry Smith +  -mat_aij_no_inode  - Do not use inodes
2034273d9f13SBarry Smith .  -mat_aij_inode_limit <limit> - Sets inode limit (max limit=5)
2035273d9f13SBarry Smith -  -mat_aij_oneindex - Internally use indexing starting at 1
2036273d9f13SBarry Smith         rather than 0.  Note that when calling MatSetValues(),
2037273d9f13SBarry Smith         the user still MUST index entries starting at 0!
2038273d9f13SBarry Smith 
2039273d9f13SBarry Smith    Example usage:
2040273d9f13SBarry Smith 
2041273d9f13SBarry Smith    Consider the following 8x8 matrix with 34 non-zero values, that is
2042273d9f13SBarry Smith    assembled across 3 processors. Lets assume that proc0 owns 3 rows,
2043273d9f13SBarry Smith    proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
2044273d9f13SBarry Smith    as follows:
2045273d9f13SBarry Smith 
2046273d9f13SBarry Smith .vb
2047273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
2048273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
2049273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
2050273d9f13SBarry Smith     -------------------------------------
2051273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
2052273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
2053273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
2054273d9f13SBarry Smith     -------------------------------------
2055273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
2056273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
2057273d9f13SBarry Smith .ve
2058273d9f13SBarry Smith 
2059273d9f13SBarry Smith    This can be represented as a collection of submatrices as:
2060273d9f13SBarry Smith 
2061273d9f13SBarry Smith .vb
2062273d9f13SBarry Smith       A B C
2063273d9f13SBarry Smith       D E F
2064273d9f13SBarry Smith       G H I
2065273d9f13SBarry Smith .ve
2066273d9f13SBarry Smith 
2067273d9f13SBarry Smith    Where the submatrices A,B,C are owned by proc0, D,E,F are
2068273d9f13SBarry Smith    owned by proc1, G,H,I are owned by proc2.
2069273d9f13SBarry Smith 
2070273d9f13SBarry Smith    The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2071273d9f13SBarry Smith    The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2072273d9f13SBarry Smith    The 'M','N' parameters are 8,8, and have the same values on all procs.
2073273d9f13SBarry Smith 
2074273d9f13SBarry Smith    The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
2075273d9f13SBarry Smith    submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
2076273d9f13SBarry Smith    corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
2077273d9f13SBarry Smith    Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
2078273d9f13SBarry Smith    part as SeqAIJ matrices. for eg: proc1 will store [E] as a SeqAIJ
2079273d9f13SBarry Smith    matrix, ans [DF] as another SeqAIJ matrix.
2080273d9f13SBarry Smith 
2081273d9f13SBarry Smith    When d_nz, o_nz parameters are specified, d_nz storage elements are
2082273d9f13SBarry Smith    allocated for every row of the local diagonal submatrix, and o_nz
2083273d9f13SBarry Smith    storage locations are allocated for every row of the OFF-DIAGONAL submat.
2084273d9f13SBarry Smith    One way to choose d_nz and o_nz is to use the max nonzerors per local
2085273d9f13SBarry Smith    rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
2086273d9f13SBarry Smith    In this case, the values of d_nz,o_nz are:
2087273d9f13SBarry Smith .vb
2088273d9f13SBarry Smith      proc0 : dnz = 2, o_nz = 2
2089273d9f13SBarry Smith      proc1 : dnz = 3, o_nz = 2
2090273d9f13SBarry Smith      proc2 : dnz = 1, o_nz = 4
2091273d9f13SBarry Smith .ve
2092273d9f13SBarry Smith    We are allocating m*(d_nz+o_nz) storage locations for every proc. This
2093273d9f13SBarry Smith    translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
2094273d9f13SBarry Smith    for proc3. i.e we are using 12+15+10=37 storage locations to store
2095273d9f13SBarry Smith    34 values.
2096273d9f13SBarry Smith 
2097273d9f13SBarry Smith    When d_nnz, o_nnz parameters are specified, the storage is specified
2098273d9f13SBarry Smith    for every row, coresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
2099273d9f13SBarry Smith    In the above case the values for d_nnz,o_nnz are:
2100273d9f13SBarry Smith .vb
2101273d9f13SBarry Smith      proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2]
2102273d9f13SBarry Smith      proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1]
2103273d9f13SBarry Smith      proc2: d_nnz = [1,1]   and o_nnz = [4,4]
2104273d9f13SBarry Smith .ve
2105273d9f13SBarry Smith    Here the space allocated is sum of all the above values i.e 34, and
2106273d9f13SBarry Smith    hence pre-allocation is perfect.
2107273d9f13SBarry Smith 
2108273d9f13SBarry Smith    Level: intermediate
2109273d9f13SBarry Smith 
2110273d9f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2111273d9f13SBarry Smith 
2112273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
2113273d9f13SBarry Smith @*/
2114273d9f13SBarry Smith int MatMPIAIJSetPreallocation(Mat B,int d_nz,int *d_nnz,int o_nz,int *o_nnz)
2115273d9f13SBarry Smith {
2116273d9f13SBarry Smith   Mat_MPIAIJ   *b;
2117273d9f13SBarry Smith   int          ierr,i;
2118273d9f13SBarry Smith   PetscTruth   flg2;
2119273d9f13SBarry Smith 
2120273d9f13SBarry Smith   PetscFunctionBegin;
2121273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPIAIJ,&flg2);CHKERRQ(ierr);
2122273d9f13SBarry Smith   if (!flg2) PetscFunctionReturn(0);
2123273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
2124435da068SBarry Smith   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2125435da068SBarry Smith   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
2126435da068SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz);
2127435da068SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz);
2128273d9f13SBarry Smith   if (d_nnz) {
2129273d9f13SBarry Smith     for (i=0; i<B->m; i++) {
2130273d9f13SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than 0: local row %d value %d",i,d_nnz[i]);
2131273d9f13SBarry Smith     }
2132273d9f13SBarry Smith   }
2133273d9f13SBarry Smith   if (o_nnz) {
2134273d9f13SBarry Smith     for (i=0; i<B->m; i++) {
2135273d9f13SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than 0: local row %d value %d",i,o_nnz[i]);
2136273d9f13SBarry Smith     }
2137273d9f13SBarry Smith   }
2138273d9f13SBarry Smith   b = (Mat_MPIAIJ*)B->data;
2139273d9f13SBarry Smith 
2140273d9f13SBarry Smith   ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,B->m,B->n,d_nz,d_nnz,&b->A);CHKERRQ(ierr);
2141b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->A);
2142273d9f13SBarry Smith   ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,B->m,B->N,o_nz,o_nnz,&b->B);CHKERRQ(ierr);
2143b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->B);
2144273d9f13SBarry Smith 
2145273d9f13SBarry Smith   PetscFunctionReturn(0);
2146273d9f13SBarry Smith }
2147273d9f13SBarry Smith 
21484a2ae208SSatish Balay #undef __FUNCT__
21494a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIAIJ"
2150273d9f13SBarry Smith /*@C
2151273d9f13SBarry Smith    MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format
2152273d9f13SBarry Smith    (the default parallel PETSc format).  For good matrix assembly performance
2153273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2154273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2155273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2156273d9f13SBarry Smith 
2157273d9f13SBarry Smith    Collective on MPI_Comm
2158273d9f13SBarry Smith 
2159273d9f13SBarry Smith    Input Parameters:
2160273d9f13SBarry Smith +  comm - MPI communicator
2161273d9f13SBarry Smith .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2162273d9f13SBarry Smith            This value should be the same as the local size used in creating the
2163273d9f13SBarry Smith            y vector for the matrix-vector product y = Ax.
2164273d9f13SBarry Smith .  n - This value should be the same as the local size used in creating the
2165273d9f13SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
2166273d9f13SBarry Smith        calculated if N is given) For square matrices n is almost always m.
2167273d9f13SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2168273d9f13SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
2169273d9f13SBarry Smith .  d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
2170273d9f13SBarry Smith            (same value is used for all local rows)
2171273d9f13SBarry Smith .  d_nnz - array containing the number of nonzeros in the various rows of the
2172273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
2173273d9f13SBarry Smith            or PETSC_NULL, if d_nz is used to specify the nonzero structure.
2174273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
2175273d9f13SBarry Smith            You must leave room for the diagonal entry even if it is zero.
2176273d9f13SBarry Smith .  o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
2177273d9f13SBarry Smith            submatrix (same value is used for all local rows).
2178273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various rows of the
2179273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
2180273d9f13SBarry Smith            each row) or PETSC_NULL, if o_nz is used to specify the nonzero
2181273d9f13SBarry Smith            structure. The size of this array is equal to the number
2182273d9f13SBarry Smith            of local rows, i.e 'm'.
2183273d9f13SBarry Smith 
2184273d9f13SBarry Smith    Output Parameter:
2185273d9f13SBarry Smith .  A - the matrix
2186273d9f13SBarry Smith 
2187273d9f13SBarry Smith    Notes:
2188273d9f13SBarry Smith    m,n,M,N parameters specify the size of the matrix, and its partitioning across
2189273d9f13SBarry Smith    processors, while d_nz,d_nnz,o_nz,o_nnz parameters specify the approximate
2190273d9f13SBarry Smith    storage requirements for this matrix.
2191273d9f13SBarry Smith 
2192273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one
2193273d9f13SBarry Smith    processor than it must be used on all processors that share the object for
2194273d9f13SBarry Smith    that argument.
2195273d9f13SBarry Smith 
2196273d9f13SBarry Smith    The AIJ format (also called the Yale sparse matrix format or
2197273d9f13SBarry Smith    compressed row storage), is fully compatible with standard Fortran 77
2198273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
2199273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users manual for details.
2200273d9f13SBarry Smith 
2201273d9f13SBarry Smith    The user MUST specify either the local or global matrix dimensions
2202273d9f13SBarry Smith    (possibly both).
2203273d9f13SBarry Smith 
2204273d9f13SBarry Smith    The parallel matrix is partitioned such that the first m0 rows belong to
2205273d9f13SBarry Smith    process 0, the next m1 rows belong to process 1, the next m2 rows belong
2206273d9f13SBarry Smith    to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
2207273d9f13SBarry Smith 
2208273d9f13SBarry Smith    The DIAGONAL portion of the local submatrix of a processor can be defined
2209273d9f13SBarry Smith    as the submatrix which is obtained by extraction the part corresponding
2210273d9f13SBarry Smith    to the rows r1-r2 and columns r1-r2 of the global matrix, where r1 is the
2211273d9f13SBarry Smith    first row that belongs to the processor, and r2 is the last row belonging
2212273d9f13SBarry Smith    to the this processor. This is a square mxm matrix. The remaining portion
2213273d9f13SBarry Smith    of the local submatrix (mxN) constitute the OFF-DIAGONAL portion.
2214273d9f13SBarry Smith 
2215273d9f13SBarry Smith    If o_nnz, d_nnz are specified, then o_nz, and d_nz are ignored.
2216273d9f13SBarry Smith 
2217273d9f13SBarry Smith    By default, this format uses inodes (identical nodes) when possible.
2218273d9f13SBarry Smith    We search for consecutive rows with the same nonzero structure, thereby
2219273d9f13SBarry Smith    reusing matrix information to achieve increased efficiency.
2220273d9f13SBarry Smith 
2221273d9f13SBarry Smith    Options Database Keys:
2222273d9f13SBarry Smith +  -mat_aij_no_inode  - Do not use inodes
2223273d9f13SBarry Smith .  -mat_aij_inode_limit <limit> - Sets inode limit (max limit=5)
2224273d9f13SBarry Smith -  -mat_aij_oneindex - Internally use indexing starting at 1
2225273d9f13SBarry Smith         rather than 0.  Note that when calling MatSetValues(),
2226273d9f13SBarry Smith         the user still MUST index entries starting at 0!
2227273d9f13SBarry Smith 
2228273d9f13SBarry Smith 
2229273d9f13SBarry Smith    Example usage:
2230273d9f13SBarry Smith 
2231273d9f13SBarry Smith    Consider the following 8x8 matrix with 34 non-zero values, that is
2232273d9f13SBarry Smith    assembled across 3 processors. Lets assume that proc0 owns 3 rows,
2233273d9f13SBarry Smith    proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
2234273d9f13SBarry Smith    as follows:
2235273d9f13SBarry Smith 
2236273d9f13SBarry Smith .vb
2237273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
2238273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
2239273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
2240273d9f13SBarry Smith     -------------------------------------
2241273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
2242273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
2243273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
2244273d9f13SBarry Smith     -------------------------------------
2245273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
2246273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
2247273d9f13SBarry Smith .ve
2248273d9f13SBarry Smith 
2249273d9f13SBarry Smith    This can be represented as a collection of submatrices as:
2250273d9f13SBarry Smith 
2251273d9f13SBarry Smith .vb
2252273d9f13SBarry Smith       A B C
2253273d9f13SBarry Smith       D E F
2254273d9f13SBarry Smith       G H I
2255273d9f13SBarry Smith .ve
2256273d9f13SBarry Smith 
2257273d9f13SBarry Smith    Where the submatrices A,B,C are owned by proc0, D,E,F are
2258273d9f13SBarry Smith    owned by proc1, G,H,I are owned by proc2.
2259273d9f13SBarry Smith 
2260273d9f13SBarry Smith    The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2261273d9f13SBarry Smith    The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
2262273d9f13SBarry Smith    The 'M','N' parameters are 8,8, and have the same values on all procs.
2263273d9f13SBarry Smith 
2264273d9f13SBarry Smith    The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
2265273d9f13SBarry Smith    submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
2266273d9f13SBarry Smith    corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
2267273d9f13SBarry Smith    Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
2268273d9f13SBarry Smith    part as SeqAIJ matrices. for eg: proc1 will store [E] as a SeqAIJ
2269273d9f13SBarry Smith    matrix, ans [DF] as another SeqAIJ matrix.
2270273d9f13SBarry Smith 
2271273d9f13SBarry Smith    When d_nz, o_nz parameters are specified, d_nz storage elements are
2272273d9f13SBarry Smith    allocated for every row of the local diagonal submatrix, and o_nz
2273273d9f13SBarry Smith    storage locations are allocated for every row of the OFF-DIAGONAL submat.
2274273d9f13SBarry Smith    One way to choose d_nz and o_nz is to use the max nonzerors per local
2275273d9f13SBarry Smith    rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
2276273d9f13SBarry Smith    In this case, the values of d_nz,o_nz are:
2277273d9f13SBarry Smith .vb
2278273d9f13SBarry Smith      proc0 : dnz = 2, o_nz = 2
2279273d9f13SBarry Smith      proc1 : dnz = 3, o_nz = 2
2280273d9f13SBarry Smith      proc2 : dnz = 1, o_nz = 4
2281273d9f13SBarry Smith .ve
2282273d9f13SBarry Smith    We are allocating m*(d_nz+o_nz) storage locations for every proc. This
2283273d9f13SBarry Smith    translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
2284273d9f13SBarry Smith    for proc3. i.e we are using 12+15+10=37 storage locations to store
2285273d9f13SBarry Smith    34 values.
2286273d9f13SBarry Smith 
2287273d9f13SBarry Smith    When d_nnz, o_nnz parameters are specified, the storage is specified
2288273d9f13SBarry Smith    for every row, coresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
2289273d9f13SBarry Smith    In the above case the values for d_nnz,o_nnz are:
2290273d9f13SBarry Smith .vb
2291273d9f13SBarry Smith      proc0: d_nnz = [2,2,2] and o_nnz = [2,2,2]
2292273d9f13SBarry Smith      proc1: d_nnz = [3,3,2] and o_nnz = [2,1,1]
2293273d9f13SBarry Smith      proc2: d_nnz = [1,1]   and o_nnz = [4,4]
2294273d9f13SBarry Smith .ve
2295273d9f13SBarry Smith    Here the space allocated is sum of all the above values i.e 34, and
2296273d9f13SBarry Smith    hence pre-allocation is perfect.
2297273d9f13SBarry Smith 
2298273d9f13SBarry Smith    Level: intermediate
2299273d9f13SBarry Smith 
2300273d9f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2301273d9f13SBarry Smith 
2302273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
2303273d9f13SBarry Smith @*/
2304273d9f13SBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
2305273d9f13SBarry Smith {
2306273d9f13SBarry Smith   int ierr,size;
2307273d9f13SBarry Smith 
2308273d9f13SBarry Smith   PetscFunctionBegin;
2309273d9f13SBarry Smith   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
2310273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2311273d9f13SBarry Smith   if (size > 1) {
2312273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIAIJ);CHKERRQ(ierr);
2313273d9f13SBarry Smith     ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2314273d9f13SBarry Smith   } else {
2315273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQAIJ);CHKERRQ(ierr);
2316273d9f13SBarry Smith     ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr);
2317273d9f13SBarry Smith   }
2318273d9f13SBarry Smith   PetscFunctionReturn(0);
2319273d9f13SBarry Smith }
2320195d93cdSBarry Smith 
23214a2ae208SSatish Balay #undef __FUNCT__
23224a2ae208SSatish Balay #define __FUNCT__ "MatMPIAIJGetSeqAIJ"
2323195d93cdSBarry Smith int MatMPIAIJGetSeqAIJ(Mat A,Mat *Ad,Mat *Ao,int **colmap)
2324195d93cdSBarry Smith {
2325195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2326195d93cdSBarry Smith   PetscFunctionBegin;
2327195d93cdSBarry Smith   *Ad     = a->A;
2328195d93cdSBarry Smith   *Ao     = a->B;
2329195d93cdSBarry Smith   *colmap = a->garray;
2330195d93cdSBarry Smith   PetscFunctionReturn(0);
2331195d93cdSBarry Smith }
2332a2243be0SBarry Smith 
2333a2243be0SBarry Smith #undef __FUNCT__
2334a2243be0SBarry Smith #define __FUNCT__ "MatSetColoring_MPIAIJ"
2335a2243be0SBarry Smith int MatSetColoring_MPIAIJ(Mat A,ISColoring coloring)
2336a2243be0SBarry Smith {
2337a2243be0SBarry Smith   int        ierr;
2338a2243be0SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
2339a2243be0SBarry Smith 
2340a2243be0SBarry Smith   PetscFunctionBegin;
2341a2243be0SBarry Smith   if (coloring->ctype == IS_COLORING_LOCAL) {
2342a2243be0SBarry Smith     int        *allcolors,*colors,i;
2343a2243be0SBarry Smith     ISColoring ocoloring;
2344a2243be0SBarry Smith 
2345a2243be0SBarry Smith     /* set coloring for diagonal portion */
2346a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->A,coloring);CHKERRQ(ierr);
2347a2243be0SBarry Smith 
2348a2243be0SBarry Smith     /* set coloring for off-diagonal portion */
2349a2243be0SBarry Smith     ierr = ISAllGatherIndices(A->comm,coloring->n,coloring->colors,PETSC_NULL,&allcolors);CHKERRQ(ierr);
2350a2243be0SBarry Smith     ierr = PetscMalloc((a->B->n+1)*sizeof(int),&colors);CHKERRQ(ierr);
2351a2243be0SBarry Smith     for (i=0; i<a->B->n; i++) {
2352a2243be0SBarry Smith       colors[i] = allcolors[a->garray[i]];
2353a2243be0SBarry Smith     }
2354a2243be0SBarry Smith     ierr = PetscFree(allcolors);CHKERRQ(ierr);
2355a2243be0SBarry Smith     ierr = ISColoringCreate(MPI_COMM_SELF,a->B->n,colors,&ocoloring);CHKERRQ(ierr);
2356a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->B,ocoloring);CHKERRQ(ierr);
2357a2243be0SBarry Smith     ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr);
2358a2243be0SBarry Smith   } else if (coloring->ctype == IS_COLORING_GHOSTED) {
2359a2243be0SBarry Smith     int        *colors,i,*larray;
2360a2243be0SBarry Smith     ISColoring ocoloring;
2361a2243be0SBarry Smith 
2362a2243be0SBarry Smith     /* set coloring for diagonal portion */
2363a2243be0SBarry Smith     ierr = PetscMalloc((a->A->n+1)*sizeof(int),&larray);CHKERRQ(ierr);
2364a2243be0SBarry Smith     for (i=0; i<a->A->n; i++) {
2365a2243be0SBarry Smith       larray[i] = i + a->cstart;
2366a2243be0SBarry Smith     }
2367a2243be0SBarry Smith     ierr = ISGlobalToLocalMappingApply(A->mapping,IS_GTOLM_MASK,a->A->n,larray,PETSC_NULL,larray);CHKERRQ(ierr);
2368a2243be0SBarry Smith     ierr = PetscMalloc((a->A->n+1)*sizeof(int),&colors);CHKERRQ(ierr);
2369a2243be0SBarry Smith     for (i=0; i<a->A->n; i++) {
2370a2243be0SBarry Smith       colors[i] = coloring->colors[larray[i]];
2371a2243be0SBarry Smith     }
2372a2243be0SBarry Smith     ierr = PetscFree(larray);CHKERRQ(ierr);
237312c595b3SBarry Smith     ierr = ISColoringCreate(PETSC_COMM_SELF,a->A->n,colors,&ocoloring);CHKERRQ(ierr);
2374a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->A,ocoloring);CHKERRQ(ierr);
2375a2243be0SBarry Smith     ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr);
2376a2243be0SBarry Smith 
2377a2243be0SBarry Smith     /* set coloring for off-diagonal portion */
2378a2243be0SBarry Smith     ierr = PetscMalloc((a->B->n+1)*sizeof(int),&larray);CHKERRQ(ierr);
2379a2243be0SBarry Smith     ierr = ISGlobalToLocalMappingApply(A->mapping,IS_GTOLM_MASK,a->B->n,a->garray,PETSC_NULL,larray);CHKERRQ(ierr);
2380a2243be0SBarry Smith     ierr = PetscMalloc((a->B->n+1)*sizeof(int),&colors);CHKERRQ(ierr);
2381a2243be0SBarry Smith     for (i=0; i<a->B->n; i++) {
2382a2243be0SBarry Smith       colors[i] = coloring->colors[larray[i]];
2383a2243be0SBarry Smith     }
2384a2243be0SBarry Smith     ierr = PetscFree(larray);CHKERRQ(ierr);
2385a2243be0SBarry Smith     ierr = ISColoringCreate(MPI_COMM_SELF,a->B->n,colors,&ocoloring);CHKERRQ(ierr);
2386a2243be0SBarry Smith     ierr = MatSetColoring_SeqAIJ(a->B,ocoloring);CHKERRQ(ierr);
2387a2243be0SBarry Smith     ierr = ISColoringDestroy(ocoloring);CHKERRQ(ierr);
2388a2243be0SBarry Smith   } else {
2389a2243be0SBarry Smith     SETERRQ1(1,"No support ISColoringType %d",coloring->ctype);
2390a2243be0SBarry Smith   }
2391a2243be0SBarry Smith 
2392a2243be0SBarry Smith   PetscFunctionReturn(0);
2393a2243be0SBarry Smith }
2394a2243be0SBarry Smith 
2395a2243be0SBarry Smith #undef __FUNCT__
2396779c1a83SBarry Smith #define __FUNCT__ "MatSetValuesAdic_MPIAIJ"
2397779c1a83SBarry Smith int MatSetValuesAdic_MPIAIJ(Mat A,void *advalues)
2398a2243be0SBarry Smith {
2399a2243be0SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
2400a2243be0SBarry Smith   int        ierr;
2401a2243be0SBarry Smith 
2402a2243be0SBarry Smith   PetscFunctionBegin;
2403779c1a83SBarry Smith   ierr = MatSetValuesAdic_SeqAIJ(a->A,advalues);CHKERRQ(ierr);
2404779c1a83SBarry Smith   ierr = MatSetValuesAdic_SeqAIJ(a->B,advalues);CHKERRQ(ierr);
2405779c1a83SBarry Smith   PetscFunctionReturn(0);
2406779c1a83SBarry Smith }
2407779c1a83SBarry Smith 
2408779c1a83SBarry Smith #undef __FUNCT__
2409779c1a83SBarry Smith #define __FUNCT__ "MatSetValuesAdifor_MPIAIJ"
2410779c1a83SBarry Smith int MatSetValuesAdifor_MPIAIJ(Mat A,int nl,void *advalues)
2411779c1a83SBarry Smith {
2412779c1a83SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data;
2413779c1a83SBarry Smith   int        ierr;
2414779c1a83SBarry Smith 
2415779c1a83SBarry Smith   PetscFunctionBegin;
2416779c1a83SBarry Smith   ierr = MatSetValuesAdifor_SeqAIJ(a->A,nl,advalues);CHKERRQ(ierr);
2417779c1a83SBarry Smith   ierr = MatSetValuesAdifor_SeqAIJ(a->B,nl,advalues);CHKERRQ(ierr);
2418a2243be0SBarry Smith   PetscFunctionReturn(0);
2419a2243be0SBarry Smith }
2420c5d6d63eSBarry Smith 
2421c5d6d63eSBarry Smith #undef __FUNCT__
2422c5d6d63eSBarry Smith #define __FUNCT__ "MatFileMerge"
2423c5d6d63eSBarry Smith /*@C
2424c5d6d63eSBarry Smith       MatFileMerge - Saves a single large PETSc matrix by reading in
2425c5d6d63eSBarry Smith             sequential matrices from each processor and concatinating them
2426c5d6d63eSBarry Smith             together.
2427c5d6d63eSBarry Smith 
2428c5d6d63eSBarry Smith     Collective on MPI_Comm
2429c5d6d63eSBarry Smith 
2430c5d6d63eSBarry Smith    Input Parameters:
2431c5d6d63eSBarry Smith +    comm - the communicators the individual files are on
2432c5d6d63eSBarry Smith .    infile - name of input file
2433c5d6d63eSBarry Smith -    outfile - name of output file
2434c5d6d63eSBarry Smith 
2435c5d6d63eSBarry Smith    Notes: The number of columns of the matrix in EACH of the seperate files
2436c5d6d63eSBarry Smith       MUST be the same.
2437c5d6d63eSBarry Smith 
2438c5d6d63eSBarry Smith           The true name of the input files on each processor is obtained by
2439c5d6d63eSBarry Smith       appending .rank onto the infile string; where rank is 0 up to one less
2440c5d6d63eSBarry Smith       then the number of processors
2441c5d6d63eSBarry Smith @*/
2442c5d6d63eSBarry Smith int MatFileMerge(MPI_Comm comm,char *infile,char *outfile)
2443c5d6d63eSBarry Smith {
2444c5d6d63eSBarry Smith   int         ierr,rank,len,m,n,i,rstart,*indx,nnz,I;
2445c5d6d63eSBarry Smith   PetscViewer in,out;
2446c5d6d63eSBarry Smith   char        *name;
2447c5d6d63eSBarry Smith   Mat         A,B;
2448c5d6d63eSBarry Smith   PetscScalar *values;
2449c5d6d63eSBarry Smith 
2450c5d6d63eSBarry Smith   PetscFunctionBegin;
2451c5d6d63eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2452c5d6d63eSBarry Smith   ierr = PetscStrlen(infile,&len);CHKERRQ(ierr);
2453c5d6d63eSBarry Smith   ierr = PetscMalloc((len+5)*sizeof(char),&name);CHKERRQ(ierr);
2454c5d6d63eSBarry Smith   sprintf(name,"%s.%d",infile,rank);
2455c5d6d63eSBarry Smith   ierr = PetscViewerBinaryOpen(PETSC_COMM_SELF,name,PETSC_BINARY_RDONLY,&in);CHKERRQ(ierr);
2456c5d6d63eSBarry Smith   ierr = PetscFree(name);
2457c5d6d63eSBarry Smith   ierr = MatLoad(in,MATSEQAIJ,&A);CHKERRQ(ierr);
2458c5d6d63eSBarry Smith   ierr = PetscViewerDestroy(in);CHKERRQ(ierr);
2459c5d6d63eSBarry Smith 
2460c5d6d63eSBarry Smith   ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr);
2461c5d6d63eSBarry Smith   ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,PETSC_DETERMINE,n,0,0,0,0,&B);CHKERRQ(ierr);
2462c5d6d63eSBarry Smith   ierr = MatGetOwnershipRange(B,&rstart,0);CHKERRQ(ierr);
2463c5d6d63eSBarry Smith   for (i=0;i<m;i++) {
2464c5d6d63eSBarry Smith     ierr = MatGetRow(A,i,&nnz,&indx,&values);CHKERRQ(ierr);
2465c5d6d63eSBarry Smith     I    = i + rstart;
2466c5d6d63eSBarry Smith     ierr = MatSetValues(B,1,&I,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
2467c5d6d63eSBarry Smith     ierr = MatRestoreRow(A,i,&nnz,&indx,&values);CHKERRQ(ierr);
2468c5d6d63eSBarry Smith   }
2469c5d6d63eSBarry Smith   ierr = MatDestroy(A);CHKERRQ(ierr);
2470c5d6d63eSBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2471c5d6d63eSBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2472c5d6d63eSBarry Smith 
2473c5d6d63eSBarry Smith   ierr = PetscViewerBinaryOpen(comm,outfile,PETSC_BINARY_CREATE,&out);CHKERRQ(ierr);
2474c5d6d63eSBarry Smith   ierr = MatView(B,out);CHKERRQ(ierr);
2475c5d6d63eSBarry Smith   ierr = PetscViewerDestroy(out);CHKERRQ(ierr);
2476c5d6d63eSBarry Smith   ierr = MatDestroy(B);CHKERRQ(ierr);
2477c5d6d63eSBarry Smith   PetscFunctionReturn(0);
2478c5d6d63eSBarry Smith }
2479c5d6d63eSBarry Smith 
2480c5d6d63eSBarry Smith #undef __FUNCT__
2481c5d6d63eSBarry Smith #define __FUNCT__ "MatFileSplit"
2482c5d6d63eSBarry Smith int MatFileSplit(Mat A,char *outfile)
2483c5d6d63eSBarry Smith {
2484c5d6d63eSBarry Smith   int         ierr,rank,len,m,N,i,rstart,*indx,nnz;
2485c5d6d63eSBarry Smith   PetscViewer out;
2486c5d6d63eSBarry Smith   char        *name;
2487c5d6d63eSBarry Smith   Mat         B;
2488c5d6d63eSBarry Smith   PetscScalar *values;
2489c5d6d63eSBarry Smith 
2490c5d6d63eSBarry Smith   PetscFunctionBegin;
2491c5d6d63eSBarry Smith 
2492c5d6d63eSBarry Smith   ierr = MatGetLocalSize(A,&m,0);CHKERRQ(ierr);
2493c5d6d63eSBarry Smith   ierr = MatGetSize(A,0,&N);CHKERRQ(ierr);
2494c5d6d63eSBarry Smith   ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,m,N,0,0,&B);CHKERRQ(ierr);
2495c5d6d63eSBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,0);CHKERRQ(ierr);
2496c5d6d63eSBarry Smith   for (i=0;i<m;i++) {
2497c5d6d63eSBarry Smith     ierr = MatGetRow(A,i+rstart,&nnz,&indx,&values);CHKERRQ(ierr);
2498c5d6d63eSBarry Smith     ierr = MatSetValues(B,1,&i,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
2499c5d6d63eSBarry Smith     ierr = MatRestoreRow(A,i+rstart,&nnz,&indx,&values);CHKERRQ(ierr);
2500c5d6d63eSBarry Smith   }
2501c5d6d63eSBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2502c5d6d63eSBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2503c5d6d63eSBarry Smith 
2504c5d6d63eSBarry Smith   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
2505c5d6d63eSBarry Smith   ierr = PetscStrlen(outfile,&len);CHKERRQ(ierr);
2506c5d6d63eSBarry Smith   ierr = PetscMalloc((len+5)*sizeof(char),&name);CHKERRQ(ierr);
2507c5d6d63eSBarry Smith   sprintf(name,"%s.%d",outfile,rank);
2508c5d6d63eSBarry Smith   ierr = PetscViewerBinaryOpen(PETSC_COMM_SELF,name,PETSC_BINARY_CREATE,&out);CHKERRQ(ierr);
2509c5d6d63eSBarry Smith   ierr = PetscFree(name);
2510c5d6d63eSBarry Smith   ierr = MatView(B,out);CHKERRQ(ierr);
2511c5d6d63eSBarry Smith   ierr = PetscViewerDestroy(out);CHKERRQ(ierr);
2512c5d6d63eSBarry Smith   ierr = MatDestroy(B);CHKERRQ(ierr);
2513c5d6d63eSBarry Smith   PetscFunctionReturn(0);
2514c5d6d63eSBarry Smith }
2515