xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 49abdd8a111d9c2ef7fc48ade253ef64e07f9b37)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
1026cec326SBarry Smith {
1126cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1226cec326SBarry Smith 
1326cec326SBarry Smith   PetscFunctionBegin;
1426cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1526cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1626cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
1726cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
1826cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2026cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2126cec326SBarry Smith #else
2226cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
2326cec326SBarry Smith #endif
2426cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
2526cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
2626cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
2726cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
2826cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
2926cec326SBarry Smith 
3026cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3126cec326SBarry Smith 
3226cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
3326cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
3426cec326SBarry Smith 
3526cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
4126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
4326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
4726cec326SBarry Smith #endif
4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
4926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
5026cec326SBarry Smith #endif
5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
5226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
5326cec326SBarry Smith #endif
5426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
5726cec326SBarry Smith #endif
5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
6026cec326SBarry Smith #endif
6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
6226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
6326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
6426cec326SBarry Smith #endif
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
6926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
7326cec326SBarry Smith #endif
7426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
7626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
7726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
7926cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
8026cec326SBarry Smith }
8126cec326SBarry Smith 
8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
8326cec326SBarry Smith #define TYPE AIJ
8426cec326SBarry Smith #define TYPE_AIJ
8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
8626cec326SBarry Smith #undef TYPE
8726cec326SBarry Smith #undef TYPE_AIJ
8826cec326SBarry Smith 
89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
90d71ae5a4SJacob Faibussowitsch {
918a9c020eSBarry Smith   Mat B;
928a9c020eSBarry Smith 
938a9c020eSBarry Smith   PetscFunctionBegin;
948a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
958a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
968a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
97501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
998a9c020eSBarry Smith }
1008a9c020eSBarry Smith 
101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
102d71ae5a4SJacob Faibussowitsch {
1038a9c020eSBarry Smith   Mat B;
1048a9c020eSBarry Smith 
1058a9c020eSBarry Smith   PetscFunctionBegin;
1068a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1078a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
108501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1108a9c020eSBarry Smith }
1118a9c020eSBarry Smith 
11201bebe75SBarry Smith /*MC
11301bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
11401bebe75SBarry Smith 
11511a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
11611a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
11711a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
11801bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
11901bebe75SBarry Smith   the above preallocation routines for simplicity.
12001bebe75SBarry Smith 
12127430b45SBarry Smith    Options Database Key:
12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
12301bebe75SBarry Smith 
12411a5261eSBarry Smith   Developer Note:
1252ef1f0ffSBarry Smith   Level: beginner
1262ef1f0ffSBarry Smith 
12711a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
12801bebe75SBarry Smith    enough exist.
12901bebe75SBarry Smith 
1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
13101bebe75SBarry Smith M*/
13201bebe75SBarry Smith 
13301bebe75SBarry Smith /*MC
13401bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
13501bebe75SBarry Smith 
13611a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
13711a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
13811a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
13901bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14001bebe75SBarry Smith   the above preallocation routines for simplicity.
14101bebe75SBarry Smith 
14227430b45SBarry Smith    Options Database Key:
14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
14401bebe75SBarry Smith 
14501bebe75SBarry Smith   Level: beginner
14601bebe75SBarry Smith 
1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
14801bebe75SBarry Smith M*/
14901bebe75SBarry Smith 
150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
151d71ae5a4SJacob Faibussowitsch {
152f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
153f74ef234SStefano Zampini 
154f74ef234SStefano Zampini   PetscFunctionBegin;
155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
156b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
157f74ef234SStefano Zampini #endif
1581baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1591baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1603120d049SRichard Tran Mills 
1613120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1623120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1633120d049SRichard Tran Mills    * to differ from the parent matrix. */
1641baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1651baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
167f74ef234SStefano Zampini }
168f74ef234SStefano Zampini 
169ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
170d71ae5a4SJacob Faibussowitsch {
17126bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
17226bda2c4Sstefano_zampini 
17326bda2c4Sstefano_zampini   PetscFunctionBegin;
17446533700Sstefano_zampini   if (mat->A) {
1759566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1769566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
17746533700Sstefano_zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17926bda2c4Sstefano_zampini }
18026bda2c4Sstefano_zampini 
181ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
182d71ae5a4SJacob Faibussowitsch {
18327d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
18427d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
18527d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
18627d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
187ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
18827d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
18927d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
19027d4218bSShri Abhyankar 
19127d4218bSShri Abhyankar   PetscFunctionBegin;
192f4259b30SLisandro Dalcin   *keptrows = NULL;
193ce496241SStefano Zampini 
19427d4218bSShri Abhyankar   ia = a->i;
19527d4218bSShri Abhyankar   ib = b->i;
1969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
1979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
19827d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
19927d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
20027d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
20127d4218bSShri Abhyankar     if (!na && !nb) {
20227d4218bSShri Abhyankar       cnt++;
20327d4218bSShri Abhyankar       goto ok1;
20427d4218bSShri Abhyankar     }
205ce496241SStefano Zampini     aa = aav + ia[i];
20627d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
20727d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
20827d4218bSShri Abhyankar     }
2098e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
21027d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
21127d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
21227d4218bSShri Abhyankar     }
21327d4218bSShri Abhyankar     cnt++;
21427d4218bSShri Abhyankar   ok1:;
21527d4218bSShri Abhyankar   }
216462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
217ce496241SStefano Zampini   if (!n0rows) {
2189566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2203ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
221ce496241SStefano Zampini   }
2229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
22327d4218bSShri Abhyankar   cnt = 0;
22427d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22527d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22627d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22727d4218bSShri Abhyankar     if (!na && !nb) continue;
228ce496241SStefano Zampini     aa = aav + ia[i];
22927d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
23027d4218bSShri Abhyankar       if (aa[j] != 0.0) {
23127d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23227d4218bSShri Abhyankar         goto ok2;
23327d4218bSShri Abhyankar       }
23427d4218bSShri Abhyankar     }
2358e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23627d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23727d4218bSShri Abhyankar       if (bb[j] != 0.0) {
23827d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23927d4218bSShri Abhyankar         goto ok2;
24027d4218bSShri Abhyankar       }
24127d4218bSShri Abhyankar     }
24227d4218bSShri Abhyankar   ok2:;
24327d4218bSShri Abhyankar   }
2449566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2469566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24827d4218bSShri Abhyankar }
24927d4218bSShri Abhyankar 
250ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
251d71ae5a4SJacob Faibussowitsch {
25299e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
25394342113SStefano Zampini   PetscBool   cong;
25499e65526SBarry Smith 
25599e65526SBarry Smith   PetscFunctionBegin;
2569566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
25794342113SStefano Zampini   if (Y->assembled && cong) {
2589566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
25999e65526SBarry Smith   } else {
2609566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
26199e65526SBarry Smith   }
2623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26399e65526SBarry Smith }
26499e65526SBarry Smith 
265ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
266d71ae5a4SJacob Faibussowitsch {
267f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
268f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
269f1f41ecbSJed Brown 
270f1f41ecbSJed Brown   PetscFunctionBegin;
2710298fd71SBarry Smith   *zrows = NULL;
2729566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2739566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
274f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2759566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
277f1f41ecbSJed Brown }
278f1f41ecbSJed Brown 
279ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
280d71ae5a4SJacob Faibussowitsch {
2810716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
282a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
2830716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
2840716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
2850716a85fSBarry Smith   PetscReal         *work;
286ce496241SStefano Zampini   const PetscScalar *dummy;
2876497c311SBarry Smith   PetscMPIInt        in;
2880716a85fSBarry Smith 
2890716a85fSBarry Smith   PetscFunctionBegin;
2909566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
2919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
2929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
2939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
2949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
2959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
296857cbf51SRichard Tran Mills   if (type == NORM_2) {
297ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
298ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
299857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
300ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
301ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
302857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
303ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
304ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
305857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
306ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
307ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
308857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
309ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
310ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
311857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
3126497c311SBarry Smith   PetscCall(PetscMPIIntCast(n, &in));
313857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
314462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(work, reductions, in, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3150716a85fSBarry Smith   } else {
316462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(work, reductions, in, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3170716a85fSBarry Smith   }
3189566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
319857cbf51SRichard Tran Mills   if (type == NORM_2) {
320a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
321857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
322a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3230716a85fSBarry Smith   }
3243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3250716a85fSBarry Smith }
3260716a85fSBarry Smith 
327ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
328d71ae5a4SJacob Faibussowitsch {
329e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
330e52d2c62SBarry Smith   IS              sis, gis;
331e52d2c62SBarry Smith   const PetscInt *isis, *igis;
332e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
333e52d2c62SBarry Smith 
334e52d2c62SBarry Smith   PetscFunctionBegin;
3359566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3369566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3379566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3389566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3399566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3409566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
341e52d2c62SBarry Smith 
3429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3439566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3449566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
345e52d2c62SBarry Smith   n = ngis + nsis;
3469566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3479566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
348e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3499566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
350e52d2c62SBarry Smith 
3519566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3529566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3539566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3549566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
356e52d2c62SBarry Smith }
357e52d2c62SBarry Smith 
358dd6ea824SBarry Smith /*
3590f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3609e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3610f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3620f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
36372fa4726SStefano Zampini has an order N integer array but is fast to access.
3649e25ed09SBarry Smith */
365d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
366d71ae5a4SJacob Faibussowitsch {
36744a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
368d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
369dbb450caSBarry Smith 
3703a40ed3dSBarry Smith   PetscFunctionBegin;
37108401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
372aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
373eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
374c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
375b1fc9764SSatish Balay #else
3769566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
377905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
378b1fc9764SSatish Balay #endif
3793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3809e25ed09SBarry Smith }
3819e25ed09SBarry Smith 
382d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
383a8f51744SPierre Jolivet   do { \
384db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
385db4deed7SKarl Rupp     else high1 = nrow1; \
386fd3458f5SBarry Smith     lastcol1 = col; \
387fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
388fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
389fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
390fd3458f5SBarry Smith       else low1 = t; \
391ba4e3ef2SSatish Balay     } \
392fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
393fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
394fd3458f5SBarry Smith       if (rp1[_i] == col) { \
3950c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
3960c0d7e18SFande Kong           ap1[_i] += value; \
3970c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
3980c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
3999371c9d4SSatish Balay         } else ap1[_i] = value; \
40030770e4dSSatish Balay         goto a_noinsert; \
4010520107fSSatish Balay       } \
4020520107fSSatish Balay     } \
4039371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4049371c9d4SSatish Balay       low1  = 0; \
4059371c9d4SSatish Balay       high1 = nrow1; \
4069371c9d4SSatish Balay       goto a_noinsert; \
4079371c9d4SSatish Balay     } \
4089371c9d4SSatish Balay     if (nonew == 1) { \
4099371c9d4SSatish Balay       low1  = 0; \
4109371c9d4SSatish Balay       high1 = nrow1; \
4119371c9d4SSatish Balay       goto a_noinsert; \
4129371c9d4SSatish Balay     } \
41308401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
414fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4159371c9d4SSatish Balay     N = nrow1++ - 1; \
4169371c9d4SSatish Balay     a->nz++; \
4179371c9d4SSatish Balay     high1++; \
4180520107fSSatish Balay     /* shift up all the later entries in this row */ \
4199566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4209566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
421fd3458f5SBarry Smith     rp1[_i] = col; \
422fd3458f5SBarry Smith     ap1[_i] = value; \
42330770e4dSSatish Balay   a_noinsert:; \
424fd3458f5SBarry Smith     ailen[row] = nrow1; \
425a8f51744SPierre Jolivet   } while (0)
4260a198c4cSBarry Smith 
427d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
428a8f51744SPierre Jolivet   do { \
429db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
430db4deed7SKarl Rupp     else high2 = nrow2; \
431fd3458f5SBarry Smith     lastcol2 = col; \
432fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
433fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
434fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
435fd3458f5SBarry Smith       else low2 = t; \
436ba4e3ef2SSatish Balay     } \
437fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
438fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
439fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4400c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4410c0d7e18SFande Kong           ap2[_i] += value; \
4420c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4439371c9d4SSatish Balay         } else ap2[_i] = value; \
44430770e4dSSatish Balay         goto b_noinsert; \
44530770e4dSSatish Balay       } \
44630770e4dSSatish Balay     } \
4479371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4489371c9d4SSatish Balay       low2  = 0; \
4499371c9d4SSatish Balay       high2 = nrow2; \
4509371c9d4SSatish Balay       goto b_noinsert; \
4519371c9d4SSatish Balay     } \
4529371c9d4SSatish Balay     if (nonew == 1) { \
4539371c9d4SSatish Balay       low2  = 0; \
4549371c9d4SSatish Balay       high2 = nrow2; \
4559371c9d4SSatish Balay       goto b_noinsert; \
4569371c9d4SSatish Balay     } \
45708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
458fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4599371c9d4SSatish Balay     N = nrow2++ - 1; \
4609371c9d4SSatish Balay     b->nz++; \
4619371c9d4SSatish Balay     high2++; \
46230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4639566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4649566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
465fd3458f5SBarry Smith     rp2[_i] = col; \
466fd3458f5SBarry Smith     ap2[_i] = value; \
46730770e4dSSatish Balay   b_noinsert:; \
468fd3458f5SBarry Smith     bilen[row] = nrow2; \
469a8f51744SPierre Jolivet   } while (0)
47030770e4dSSatish Balay 
471ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
472d71ae5a4SJacob Faibussowitsch {
4732fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4742fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4752fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
476fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4772fd7e33dSBarry Smith 
4782fd7e33dSBarry Smith   PetscFunctionBegin;
4792fd7e33dSBarry Smith   /* code only works for square matrices A */
4802fd7e33dSBarry Smith 
4812fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
4829566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
4832fd7e33dSBarry Smith   row = row - diag;
4842fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
4852fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
4862fd7e33dSBarry Smith   }
487fff043a9SJunchao Zhang   if (l) {
4889566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
4899566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
4909566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
491fff043a9SJunchao Zhang   }
4922fd7e33dSBarry Smith 
4932fd7e33dSBarry Smith   /* diagonal part */
494fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
4959566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
49657508eceSPierre Jolivet     PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row]));
4979566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
498fff043a9SJunchao Zhang   }
4992fd7e33dSBarry Smith 
5002fd7e33dSBarry Smith   /* right of diagonal part */
501fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5029566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5039566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5049566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
505fff043a9SJunchao Zhang   }
5063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5072fd7e33dSBarry Smith }
5082fd7e33dSBarry Smith 
509d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
510d71ae5a4SJacob Faibussowitsch {
51144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
512071fcb05SBarry Smith   PetscScalar value = 0.0;
513d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
514d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
515ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5168a729477SBarry Smith 
5170520107fSSatish Balay   /* Some Variables required in the macro */
5184ee7247eSSatish Balay   Mat         A     = aij->A;
5194ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
52057809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
521ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
52230770e4dSSatish Balay   Mat         B                 = aij->B;
52330770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
524d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
525ce496241SStefano Zampini   MatScalar  *aa, *ba;
526fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5278d76821aSHong Zhang   PetscInt    nonew;
528a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5294ee7247eSSatish Balay 
5303a40ed3dSBarry Smith   PetscFunctionBegin;
5319566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5338a729477SBarry Smith   for (i = 0; i < m; i++) {
5345ef9f2a5SBarry Smith     if (im[i] < 0) continue;
53508401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5364b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5374b0e389bSBarry Smith       row      = im[i] - rstart;
538fd3458f5SBarry Smith       lastcol1 = -1;
5398e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5408e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
541fd3458f5SBarry Smith       rmax1    = aimax[row];
542fd3458f5SBarry Smith       nrow1    = ailen[row];
543fd3458f5SBarry Smith       low1     = 0;
544fd3458f5SBarry Smith       high1    = nrow1;
545fd3458f5SBarry Smith       lastcol2 = -1;
5468e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5478e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
548fd3458f5SBarry Smith       rmax2    = bimax[row];
549d498b1e9SBarry Smith       nrow2    = bilen[row];
550fd3458f5SBarry Smith       low2     = 0;
551fd3458f5SBarry Smith       high2    = nrow2;
552fd3458f5SBarry Smith 
5531eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
554071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
555c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
556fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
557fd3458f5SBarry Smith           col   = in[j] - cstart;
5588d76821aSHong Zhang           nonew = a->nonew;
559d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
560f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
561f7d195e4SLawrence Mitchell           continue;
562f7d195e4SLawrence Mitchell         } else {
563f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
564227d817aSBarry Smith           if (mat->was_assembled) {
56548a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
566aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
567eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
568fa46199cSSatish Balay             col--;
569b1fc9764SSatish Balay #else
570905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
571b1fc9764SSatish Balay #endif
572f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
5739566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIAIJ(mat));               /* Change aij->B from reduced/local format to expanded/global format */
5744b0e389bSBarry Smith               col = in[j];
5759bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
576f9508a3cSSatish Balay               B     = aij->B;
577f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5789371c9d4SSatish Balay               bimax = b->imax;
5799371c9d4SSatish Balay               bi    = b->i;
5809371c9d4SSatish Balay               bilen = b->ilen;
5819371c9d4SSatish Balay               bj    = b->j;
5829371c9d4SSatish Balay               ba    = b->a;
583cff58d65SJunchao Zhang               rp2   = PetscSafePointerPlusOffset(bj, bi[row]);
584cff58d65SJunchao Zhang               ap2   = PetscSafePointerPlusOffset(ba, bi[row]);
585d498b1e9SBarry Smith               rmax2 = bimax[row];
586d498b1e9SBarry Smith               nrow2 = bilen[row];
587d498b1e9SBarry Smith               low2  = 0;
588d498b1e9SBarry Smith               high2 = nrow2;
589d0f46423SBarry Smith               bm    = aij->B->rmap->n;
590f9508a3cSSatish Balay               ba    = b->a;
591d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
592f4f49eeaSPierre Jolivet               if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) {
5939566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
59498921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
5950587a0fcSBarry Smith             }
596c48de900SBarry Smith           } else col = in[j];
5978d76821aSHong Zhang           nonew = b->nonew;
598d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
5991eb62cbbSBarry Smith         }
6001eb62cbbSBarry Smith       }
6015ef9f2a5SBarry Smith     } else {
60228b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
60390f02eecSBarry Smith       if (!aij->donotstash) {
6045080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
605d36fbae8SSatish Balay         if (roworiented) {
6068e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
607d36fbae8SSatish Balay         } else {
6088e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6094b0e389bSBarry Smith         }
6101eb62cbbSBarry Smith       }
6118a729477SBarry Smith     }
61290f02eecSBarry Smith   }
6135519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6168a729477SBarry Smith }
6178a729477SBarry Smith 
6182b08fdbeSandi selinger /*
619904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6202b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
621904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6222b08fdbeSandi selinger */
623d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
624d71ae5a4SJacob Faibussowitsch {
625904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
626904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6274cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
628904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
629904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
630904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
631904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
632904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6336dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
634904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
635904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
636904d1e70Sandi selinger 
637904d1e70Sandi selinger   PetscFunctionBegin;
638904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
639904d1e70Sandi selinger   for (j = 0; j < am; j++) {
640904d1e70Sandi selinger     dnz = onz = 0;
641904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6426dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
643904d1e70Sandi selinger       /* If column is in the diagonal */
644904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
645904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
646904d1e70Sandi selinger         dnz++;
647904d1e70Sandi selinger       } else { /* off-diagonal entries */
648904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
649904d1e70Sandi selinger         onz++;
650904d1e70Sandi selinger       }
651904d1e70Sandi selinger     }
652904d1e70Sandi selinger     ailen[j] = dnz;
653904d1e70Sandi selinger     bilen[j] = onz;
654904d1e70Sandi selinger   }
6553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
656904d1e70Sandi selinger }
657904d1e70Sandi selinger 
658904d1e70Sandi selinger /*
659904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
660904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6611de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6621de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6631de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
664904d1e70Sandi selinger */
665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
666d71ae5a4SJacob Faibussowitsch {
6673a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6683a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6694cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
670f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6713a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6723a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6733a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6743a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6753a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6766dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6771de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
678904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
679904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
6803a063d27Sandi selinger 
6813a063d27Sandi selinger   PetscFunctionBegin;
6823a063d27Sandi selinger   /* Iterate over all rows of the matrix */
6833a063d27Sandi selinger   for (j = 0; j < am; j++) {
684904d1e70Sandi selinger     dnz_row = onz_row = 0;
685904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
686904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
687e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
688e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
689ae8e66a0Sandi selinger       /* If column is in the diagonal */
6903a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
691904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
692904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
693904d1e70Sandi selinger         dnz_row++;
694ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
695904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
696904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
697904d1e70Sandi selinger         onz_row++;
6983a063d27Sandi selinger       }
6993a063d27Sandi selinger     }
700904d1e70Sandi selinger     ailen[j] = dnz_row;
701904d1e70Sandi selinger     bilen[j] = onz_row;
7023a063d27Sandi selinger   }
7033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7043a063d27Sandi selinger }
7053a063d27Sandi selinger 
706ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
707d71ae5a4SJacob Faibussowitsch {
708b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
709d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
710d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
711b49de8d1SLois Curfman McInnes 
7123a40ed3dSBarry Smith   PetscFunctionBegin;
713b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
71454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
71554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
71685835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
717b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
718b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
71954c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
72054c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
721b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
722b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7239566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
724fa852ad4SSatish Balay       } else {
72548a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
726aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
727eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
728fa46199cSSatish Balay         col--;
729b1fc9764SSatish Balay #else
730905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
731b1fc9764SSatish Balay #endif
732e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
73348a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
734b49de8d1SLois Curfman McInnes       }
735b49de8d1SLois Curfman McInnes     }
736b49de8d1SLois Curfman McInnes   }
7373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
738b49de8d1SLois Curfman McInnes }
739bc5ccf88SSatish Balay 
740ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
741d71ae5a4SJacob Faibussowitsch {
742bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
743b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
744bc5ccf88SSatish Balay 
745bc5ccf88SSatish Balay   PetscFunctionBegin;
7463ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
747bc5ccf88SSatish Balay 
7489566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7499566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7509566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
752bc5ccf88SSatish Balay }
753bc5ccf88SSatish Balay 
754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
755d71ae5a4SJacob Faibussowitsch {
756bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
757b1d57f15SBarry Smith   PetscMPIInt  n;
758b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
759e44c0bd4SBarry Smith   PetscInt    *row, *col;
760ace3abfcSBarry Smith   PetscBool    other_disassembled;
76187828ca2SBarry Smith   PetscScalar *val;
762bc5ccf88SSatish Balay 
76391c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7646e111a19SKarl Rupp 
765bc5ccf88SSatish Balay   PetscFunctionBegin;
7664cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
767a2d1c673SSatish Balay     while (1) {
7689566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
769a2d1c673SSatish Balay       if (!flg) break;
770a2d1c673SSatish Balay 
771bc5ccf88SSatish Balay       for (i = 0; i < n;) {
772bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7732205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7742205254eSKarl Rupp           if (row[j] != rstart) break;
7752205254eSKarl Rupp         }
776bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
777bc5ccf88SSatish Balay         else ncols = n - i;
778bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7799566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
780bc5ccf88SSatish Balay         i = j;
781bc5ccf88SSatish Balay       }
782bc5ccf88SSatish Balay     }
7839566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
784bc5ccf88SSatish Balay   }
7858c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
786c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
7879ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
7889ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
7899566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
7909566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
7919ecce9b1SRichard Tran Mills   }
792e2cf4d64SStefano Zampini #endif
7939566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
7949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
795bc5ccf88SSatish Balay 
796bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
797071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
798bc5ccf88SSatish Balay   /*
799bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
800bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
801bc5ccf88SSatish Balay   */
802bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
803462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
80435cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
8059566063dSJacob Faibussowitsch       PetscCall(MatDisAssemble_MPIAIJ(mat));
806ad59fb31SSatish Balay     }
807ad59fb31SSatish Balay   }
80848a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8099566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8108c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
811c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
812e2cf4d64SStefano Zampini #endif
8139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
815bc5ccf88SSatish Balay 
8169566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8172205254eSKarl Rupp 
818f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
819a30b2313SHong Zhang 
8209566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
821e56f5c9eSBarry Smith 
8224f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
823f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
824e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
825462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
826e56f5c9eSBarry Smith   }
8278c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
828c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
829e2cf4d64SStefano Zampini #endif
8303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
831bc5ccf88SSatish Balay }
832bc5ccf88SSatish Balay 
833ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
834d71ae5a4SJacob Faibussowitsch {
83544a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8363a40ed3dSBarry Smith 
8373a40ed3dSBarry Smith   PetscFunctionBegin;
8389566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8399566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8411eb62cbbSBarry Smith }
8421eb62cbbSBarry Smith 
843ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
844d71ae5a4SJacob Faibussowitsch {
8451b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8461b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8476e520ac8SStefano Zampini   PetscInt    r, len;
8489939a2d1SBarry Smith   PetscBool   cong;
8491eb62cbbSBarry Smith 
8503a40ed3dSBarry Smith   PetscFunctionBegin;
8516e520ac8SStefano Zampini   /* get locally owned rows */
8529566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8539566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
854dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
85597b48c8fSBarry Smith   if (x && b) {
8561b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8571b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8581b1dd7adSMatthew G. Knepley 
85928b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8609566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8619566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8621b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8639566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8649566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
86597b48c8fSBarry Smith   }
866a92ad425SStefano Zampini 
867a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8689566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8699566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
870a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
871a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
872a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
873a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
874a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
875a92ad425SStefano Zampini 
876a92ad425SStefano Zampini     nnwA = aijA->nonew;
877a92ad425SStefano Zampini     nnwB = aijB->nonew;
878a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
879a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
880a92ad425SStefano Zampini     if (!nnzA) {
8819566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
882a92ad425SStefano Zampini       aijA->nonew = 0;
883a92ad425SStefano Zampini     }
884a92ad425SStefano Zampini     if (!nnzB) {
8859566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
886a92ad425SStefano Zampini       aijB->nonew = 0;
887a92ad425SStefano Zampini     }
888a92ad425SStefano Zampini     /* Must zero here before the next loop */
8899566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
8909566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
8911b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
8921b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
893a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
8949566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
895e2d53e46SBarry Smith     }
896a92ad425SStefano Zampini     aijA->nonew = nnwA;
897a92ad425SStefano Zampini     aijB->nonew = nnwB;
8986eb55b6aSBarry Smith   } else {
8999566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9009566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9016eb55b6aSBarry Smith   }
9029566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9054f9cfa9eSBarry Smith 
9069939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
907f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9089939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
909462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9109939a2d1SBarry Smith   }
9113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9121eb62cbbSBarry Smith }
9131eb62cbbSBarry Smith 
914ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
915d71ae5a4SJacob Faibussowitsch {
9169c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9176497c311SBarry Smith   PetscInt           n = A->rmap->n;
918131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
91954bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
920131c27b5Sprj-   PetscMPIInt        p = 0;
92154bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
92254bd4135SMatthew G. Knepley   PetscSF            sf;
9239c7c4993SBarry Smith   const PetscScalar *xx;
924fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
925564f14d6SBarry Smith   Vec                xmask, lmask;
926564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
927564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
928564f14d6SBarry Smith   PetscScalar       *aa;
9299c7c4993SBarry Smith 
9309c7c4993SBarry Smith   PetscFunctionBegin;
93154bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
93354bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9349566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
93554bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
93654bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
937aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9385ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9399566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9405ba17502SJed Brown     }
94154bd4135SMatthew G. Knepley     rrows[r].rank  = p;
94254bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9439c7c4993SBarry Smith   }
9449566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9459566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
94654bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9479566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9489566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9499566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
95054bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9519371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9529371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
953564f14d6SBarry Smith   /* zero diagonal part of matrix */
9549566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9554cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9569566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9579566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9589566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
95954bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9609566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9619566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9629566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9639566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
964a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
965a92ad425SStefano Zampini     PetscBool cong;
966a92ad425SStefano Zampini 
9679566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
96828b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9699566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9709566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9719566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9729566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
973377aa5a1SBarry Smith   }
9749566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9754cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9769566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
977564f14d6SBarry Smith   ii = aij->i;
9788e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
979564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
980564f14d6SBarry Smith   if (aij->compressedrow.use) {
981564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
982564f14d6SBarry Smith     ii   = aij->compressedrow.i;
983564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
984564f14d6SBarry Smith     for (i = 0; i < m; i++) {
985564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
986564f14d6SBarry Smith       aj = aij->j + ii[i];
987fff043a9SJunchao Zhang       aa = aij_a + ii[i];
988564f14d6SBarry Smith 
989564f14d6SBarry Smith       for (j = 0; j < n; j++) {
99025266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
991377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
992564f14d6SBarry Smith           *aa = 0.0;
993564f14d6SBarry Smith         }
994564f14d6SBarry Smith         aa++;
995564f14d6SBarry Smith         aj++;
996564f14d6SBarry Smith       }
997564f14d6SBarry Smith       ridx++;
998564f14d6SBarry Smith     }
999564f14d6SBarry Smith   } else { /* do not use compressed row format */
1000564f14d6SBarry Smith     m = l->B->rmap->n;
1001564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1002564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1003564f14d6SBarry Smith       aj = aij->j + ii[i];
1004fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1005564f14d6SBarry Smith       for (j = 0; j < n; j++) {
100625266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1007377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1008564f14d6SBarry Smith           *aa = 0.0;
1009564f14d6SBarry Smith         }
1010564f14d6SBarry Smith         aa++;
1011564f14d6SBarry Smith         aj++;
1012564f14d6SBarry Smith       }
1013564f14d6SBarry Smith     }
1014564f14d6SBarry Smith   }
1015a92ad425SStefano Zampini   if (x && b) {
10169566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10179566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1018377aa5a1SBarry Smith   }
10199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10209566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10229566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10234f9cfa9eSBarry Smith 
10244f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1025f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10264f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1027462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10284f9cfa9eSBarry Smith   }
10293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10309c7c4993SBarry Smith }
10319c7c4993SBarry Smith 
1032ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1033d71ae5a4SJacob Faibussowitsch {
1034416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1035b1d57f15SBarry Smith   PetscInt    nt;
103619b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1037416022c9SBarry Smith 
10383a40ed3dSBarry Smith   PetscFunctionBegin;
10399566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
104008401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10419566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1042296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10439566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1044296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10461eb62cbbSBarry Smith }
10471eb62cbbSBarry Smith 
1048ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1049d71ae5a4SJacob Faibussowitsch {
1050bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1051bd0c2dcbSBarry Smith 
1052bd0c2dcbSBarry Smith   PetscFunctionBegin;
10539566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1055bd0c2dcbSBarry Smith }
1056bd0c2dcbSBarry Smith 
1057ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1058d71ae5a4SJacob Faibussowitsch {
1059416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
106001ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10613a40ed3dSBarry Smith 
10623a40ed3dSBarry Smith   PetscFunctionBegin;
10639566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10649566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10659566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10669566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1068da3a660dSBarry Smith }
1069da3a660dSBarry Smith 
1070ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1071d71ae5a4SJacob Faibussowitsch {
1072416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1073da3a660dSBarry Smith 
10743a40ed3dSBarry Smith   PetscFunctionBegin;
1075da3a660dSBarry Smith   /* do nondiagonal part */
10769566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1077da3a660dSBarry Smith   /* do local part */
10789566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10799613dc34SJunchao Zhang   /* add partial results together */
10809566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10819566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1083da3a660dSBarry Smith }
1084da3a660dSBarry Smith 
1085ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1086d71ae5a4SJacob Faibussowitsch {
10874f423910Svictorle   MPI_Comm    comm;
1088ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1089ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1090cd0d46ebSvictorle   IS          Me, Notme;
1091b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
109254d735aeSStefano Zampini   PetscBool   lf;
1093b1d57f15SBarry Smith   PetscMPIInt size;
1094cd0d46ebSvictorle 
1095cd0d46ebSvictorle   PetscFunctionBegin;
109642e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
10979566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
1098462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
10993ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11009566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11023ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
110342e5f5b4Svictorle 
11047dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11059566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11069566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1108cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1109cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11109566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11119566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11129566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
111366501d38Svictorle   Aoff = Aoffs[0];
11149566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
111566501d38Svictorle   Boff = Boffs[0];
11169566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11179566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11189566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11199566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11209566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11219566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1123cd0d46ebSvictorle }
1124cd0d46ebSvictorle 
1125ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1126d71ae5a4SJacob Faibussowitsch {
1127416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1128da3a660dSBarry Smith 
11293a40ed3dSBarry Smith   PetscFunctionBegin;
1130da3a660dSBarry Smith   /* do nondiagonal part */
11319566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1132da3a660dSBarry Smith   /* do local part */
11339566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11349613dc34SJunchao Zhang   /* add partial results together */
11359566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11369566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1138da3a660dSBarry Smith }
1139da3a660dSBarry Smith 
11401eb62cbbSBarry Smith /*
11411eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11421eb62cbbSBarry Smith    diagonal block
11431eb62cbbSBarry Smith */
1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1145d71ae5a4SJacob Faibussowitsch {
1146416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11473a40ed3dSBarry Smith 
11483a40ed3dSBarry Smith   PetscFunctionBegin;
114908401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1150aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11519566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11531eb62cbbSBarry Smith }
11541eb62cbbSBarry Smith 
1155ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1156d71ae5a4SJacob Faibussowitsch {
1157052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11583a40ed3dSBarry Smith 
11593a40ed3dSBarry Smith   PetscFunctionBegin;
11609566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11619566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1163052efed2SBarry Smith }
1164052efed2SBarry Smith 
1165ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1166d71ae5a4SJacob Faibussowitsch {
11678e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11688e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11698e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11703ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11712e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
117217a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
117317a3732bSBarry Smith   PetscInt64         nz, hnz;
11743ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11753ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11763ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
117717a3732bSBarry Smith   PetscMPIInt        rank;
11788e2fed03SBarry Smith 
11798e2fed03SBarry Smith   PetscFunctionBegin;
11809566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
11813ea6fe3dSLisandro Dalcin 
11823ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
11833ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
11843ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
11853ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
11863ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
11878e2fed03SBarry Smith   nz = A->nz + B->nz;
11883ea6fe3dSLisandro Dalcin 
11893ea6fe3dSLisandro Dalcin   /* write matrix header */
11900700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
11919371c9d4SSatish Balay   header[1] = M;
11929371c9d4SSatish Balay   header[2] = N;
119317a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
119417a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
119538b83642SBarry Smith   if (rank == 0) {
11961690c2aeSBarry Smith     if (hnz > PETSC_INT_MAX) header[3] = PETSC_INT_MAX;
119738b83642SBarry Smith     else header[3] = (PetscInt)hnz;
119838b83642SBarry Smith   }
11999566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12008e2fed03SBarry Smith 
12013ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12033ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12049566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12059566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12068e2fed03SBarry Smith 
12073ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12093ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12103ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12113ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12123ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12138e2fed03SBarry Smith     }
12149371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12159371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12168e2fed03SBarry Smith   }
121717a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12189566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12199566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12208e2fed03SBarry Smith 
12213ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12253ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12263ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12273ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12282e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12298e2fed03SBarry Smith     }
12309371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12319371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12328e2fed03SBarry Smith   }
12339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
123517a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12369566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12379566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12388e2fed03SBarry Smith 
12393ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12409566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12428e2fed03SBarry Smith }
12438e2fed03SBarry Smith 
12449804daf3SBarry Smith #include <petscdraw.h>
1245ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1246d71ae5a4SJacob Faibussowitsch {
124744a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
124832dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1249ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1250b0a32e0cSBarry Smith   PetscViewer       sviewer;
1251f3ef73ceSBarry Smith   PetscViewerFormat format;
1252416022c9SBarry Smith 
12533a40ed3dSBarry Smith   PetscFunctionBegin;
12549566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12559566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12569566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
125732077d6dSBarry Smith   if (iascii) {
12589566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1259ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
12601690c2aeSBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12619566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12629566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1263ef5fdb51SBarry Smith       for (i = 0; i < (PetscInt)size; i++) {
1264ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1265ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1266ef5fdb51SBarry Smith         navg += nz[i];
1267ef5fdb51SBarry Smith       }
12689566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1269ef5fdb51SBarry Smith       navg = navg / size;
12709566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12713ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1272ef5fdb51SBarry Smith     }
12739566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1274456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12754e220ebcSLois Curfman McInnes       MatInfo   info;
12766335e310SSatish Balay       PetscInt *inodes = NULL;
1277923f20ffSKris Buschelman 
12789566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12799566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12809566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12819566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1282923f20ffSKris Buschelman       if (!inodes) {
12839371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12849371c9d4SSatish Balay                                                      (double)info.memory));
12856831982aSBarry Smith       } else {
12869371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12879371c9d4SSatish Balay                                                      (double)info.memory));
12886831982aSBarry Smith       }
12899566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
12909566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12919566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
12929566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12939566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
12949566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
12959566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
12969566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
12973ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1298fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1299923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13009566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1301923f20ffSKris Buschelman       if (inodes) {
13029566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1303d38fa0fbSBarry Smith       } else {
13049566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1305d38fa0fbSBarry Smith       }
13063ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13074aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13083ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
130908480c60SBarry Smith     }
13108e2fed03SBarry Smith   } else if (isbinary) {
13118e2fed03SBarry Smith     if (size == 1) {
13129566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13139566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13148e2fed03SBarry Smith     } else {
13159566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13168e2fed03SBarry Smith     }
13173ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
131871e56450SStefano Zampini   } else if (iascii && size == 1) {
13199566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13209566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13213ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13220f5bd95cSBarry Smith   } else if (isdraw) {
1323b0a32e0cSBarry Smith     PetscDraw draw;
1324ace3abfcSBarry Smith     PetscBool isnull;
13259566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13269566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13273ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
132819bcc07fSBarry Smith   }
132919bcc07fSBarry Smith 
133071e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
133171e56450SStefano Zampini     Mat A = NULL, Av;
133271e56450SStefano Zampini     IS  isrow, iscol;
13332ee70a88SLois Curfman McInnes 
13349566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13359566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13369566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13379566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
133871e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
133971e56450SStefano Zampini     /*
134071e56450SStefano Zampini     Mat *AA, A = NULL, Av;
134171e56450SStefano Zampini     IS  isrow,iscol;
134271e56450SStefano Zampini 
13439566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13449566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13459566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1346dd400576SPatrick Sanan     if (rank == 0) {
13479566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
134871e56450SStefano Zampini        A    = AA[0];
134971e56450SStefano Zampini        Av   = AA[0];
135095373324SBarry Smith     }
13519566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
135271e56450SStefano Zampini */
13539566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13549566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
135555843e3eSBarry Smith     /*
135655843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1357b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
135855843e3eSBarry Smith     */
13599566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1360dd400576SPatrick Sanan     if (rank == 0) {
136148a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13629566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
136395373324SBarry Smith     }
13649566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13659566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
136695373324SBarry Smith   }
13673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13681eb62cbbSBarry Smith }
13691eb62cbbSBarry Smith 
1370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1371d71ae5a4SJacob Faibussowitsch {
1372ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1373416022c9SBarry Smith 
13743a40ed3dSBarry Smith   PetscFunctionBegin;
13759566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13769566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13779566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13789566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
137948a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1381416022c9SBarry Smith }
1382416022c9SBarry Smith 
1383ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1384d71ae5a4SJacob Faibussowitsch {
138544a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1386f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1387ace3abfcSBarry Smith   PetscBool   hasop;
13888a729477SBarry Smith 
13893a40ed3dSBarry Smith   PetscFunctionBegin;
1390a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
13919566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
13923ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1393a2b30743SBarry Smith   }
1394a2b30743SBarry Smith 
139548a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
13964e980039SJed Brown 
1397c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1398da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
13999566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14002798e883SHong Zhang       its--;
1401da3a660dSBarry Smith     }
14022798e883SHong Zhang 
14032798e883SHong Zhang     while (its--) {
14049566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14059566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14062798e883SHong Zhang 
1407c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14089566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14099566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14102798e883SHong Zhang 
1411c14dc6b6SHong Zhang       /* local sweep */
14129566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14132798e883SHong Zhang     }
14143a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1415da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14169566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14172798e883SHong Zhang       its--;
1418da3a660dSBarry Smith     }
14192798e883SHong Zhang     while (its--) {
14209566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14219566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14222798e883SHong Zhang 
1423c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14249566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14259566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1426c14dc6b6SHong Zhang 
1427c14dc6b6SHong Zhang       /* local sweep */
14289566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14292798e883SHong Zhang     }
14303a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1431da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14329566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14332798e883SHong Zhang       its--;
1434da3a660dSBarry Smith     }
14352798e883SHong Zhang     while (its--) {
14369566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14379566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14382798e883SHong Zhang 
1439c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14409566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14419566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14422798e883SHong Zhang 
1443c14dc6b6SHong Zhang       /* local sweep */
14449566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14452798e883SHong Zhang     }
1446a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1447a7420bb7SBarry Smith     Vec xx1;
1448a7420bb7SBarry Smith 
14499566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14509566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1451a7420bb7SBarry Smith 
14529566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14539566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1454a7420bb7SBarry Smith     if (!mat->diag) {
14559566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14569566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1457a7420bb7SBarry Smith     }
14589566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1459bd0c2dcbSBarry Smith     if (hasop) {
14609566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1461bd0c2dcbSBarry Smith     } else {
14629566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1463bd0c2dcbSBarry Smith     }
14649566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1465887ee2caSBarry Smith 
14669566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1467a7420bb7SBarry Smith 
1468a7420bb7SBarry Smith     /* local sweep */
14699566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14709566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14719566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1472ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1473c14dc6b6SHong Zhang 
14749566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1475a0808db4SHong Zhang 
14767b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14788a729477SBarry Smith }
1479a66be287SLois Curfman McInnes 
1480ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1481d71ae5a4SJacob Faibussowitsch {
148272e6a0cfSJed Brown   Mat             aA, aB, Aperm;
148372e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
148472e6a0cfSJed Brown   PetscScalar    *aa, *ba;
148572e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
148672e6a0cfSJed Brown   PetscSF         rowsf, sf;
14870298fd71SBarry Smith   IS              parcolp = NULL;
148872e6a0cfSJed Brown   PetscBool       done;
148942e855d1Svictor 
149042e855d1Svictor   PetscFunctionBegin;
14919566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
14929566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
14939566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
14949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
149572e6a0cfSJed Brown 
149672e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
14979566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
14989566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
14999566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
150072e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15019566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15029566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
150372e6a0cfSJed Brown 
150472e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15059566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15069566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15079566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
150872e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15099566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15109566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15119566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
151272e6a0cfSJed Brown 
15139566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15149566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15159566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
151672e6a0cfSJed Brown 
151772e6a0cfSJed Brown   /* Find out where my gcols should go */
15189566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15209566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15219566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15249566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15259566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152672e6a0cfSJed Brown 
15279566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15289566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15299566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
153072e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1531131c27b5Sprj-     PetscInt    row = rdest[i];
1532131c27b5Sprj-     PetscMPIInt rowner;
15339566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
153472e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1535131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1536131c27b5Sprj-       PetscMPIInt cowner;
15379566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
153872e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
153972e6a0cfSJed Brown       else onnz[i]++;
154072e6a0cfSJed Brown     }
154172e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1542131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1543131c27b5Sprj-       PetscMPIInt cowner;
15449566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
154572e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
154672e6a0cfSJed Brown       else onnz[i]++;
154772e6a0cfSJed Brown     }
154872e6a0cfSJed Brown   }
15499566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15509566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15519566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15529566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15539566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
155472e6a0cfSJed Brown 
15559566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15579566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
155872e6a0cfSJed Brown   for (i = 0; i < m; i++) {
155972e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1560970468b0SJed Brown     PetscInt  j0, rowlen;
156172e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1562970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1563970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15649566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1565970468b0SJed Brown     }
156672e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1567970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1568970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15699566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1570970468b0SJed Brown     }
157172e6a0cfSJed Brown   }
15729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15749566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15759566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15769566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15789566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15799566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15809566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15819566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
158272e6a0cfSJed Brown   *B = Aperm;
15833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
158442e855d1Svictor }
158542e855d1Svictor 
1586ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1587d71ae5a4SJacob Faibussowitsch {
1588c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1589c5e4d11fSDmitry Karpeev 
1590c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
15919566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1592c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
15933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1594c5e4d11fSDmitry Karpeev }
1595c5e4d11fSDmitry Karpeev 
1596ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1597d71ae5a4SJacob Faibussowitsch {
1598a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1599a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16003966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1601a66be287SLois Curfman McInnes 
16023a40ed3dSBarry Smith   PetscFunctionBegin;
16034e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16049566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16052205254eSKarl Rupp 
16069371c9d4SSatish Balay   isend[0] = info->nz_used;
16079371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16089371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16099371c9d4SSatish Balay   isend[3] = info->memory;
16109371c9d4SSatish Balay   isend[4] = info->mallocs;
16112205254eSKarl Rupp 
16129566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16132205254eSKarl Rupp 
16149371c9d4SSatish Balay   isend[0] += info->nz_used;
16159371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16169371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16179371c9d4SSatish Balay   isend[3] += info->memory;
16189371c9d4SSatish Balay   isend[4] += info->mallocs;
1619a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16204e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16214e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16224e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16234e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16244e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1625a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1626462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16272205254eSKarl Rupp 
16284e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16294e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16304e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16314e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16324e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1633a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1634462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16352205254eSKarl Rupp 
16364e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16374e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16384e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16394e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16404e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1641a66be287SLois Curfman McInnes   }
16424e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16434e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16444e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1646a66be287SLois Curfman McInnes }
1647a66be287SLois Curfman McInnes 
1648d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1649d71ae5a4SJacob Faibussowitsch {
1650c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1651c74985f6SBarry Smith 
16523a40ed3dSBarry Smith   PetscFunctionBegin;
165312c028f9SKris Buschelman   switch (op) {
1654512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
165512c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
165628b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1657a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
165812c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16590ad02fcaSStefano Zampini   case MAT_USE_INODES:
166012c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16611a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1662fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16639566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16649566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
166512c028f9SKris Buschelman     break;
166612c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
166743674050SBarry Smith     MatCheckPreallocated(A, 1);
16684e0d8c25SBarry Smith     a->roworiented = flg;
16692205254eSKarl Rupp 
16709566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16719566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
167212c028f9SKris Buschelman     break;
16738c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1674d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1675d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1676d71ae5a4SJacob Faibussowitsch     break;
1677d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1678d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1679d71ae5a4SJacob Faibussowitsch     break;
1680c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1681ffa07934SHong Zhang   case MAT_SPD:
168277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
168377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1684bf108f30SBarry Smith   case MAT_HERMITIAN:
1685bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1686b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1687b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1688b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
168977e54ba9SKris Buschelman     break;
1690d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1691d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1692d71ae5a4SJacob Faibussowitsch     break;
1693957cac9fSHong Zhang   case MAT_STRUCTURE_ONLY:
1694957cac9fSHong Zhang     /* The option is handled directly by MatSetOption() */
1695957cac9fSHong Zhang     break;
1696d71ae5a4SJacob Faibussowitsch   default:
1697d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
16983a40ed3dSBarry Smith   }
16993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1700c74985f6SBarry Smith }
1701c74985f6SBarry Smith 
1702d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1703d71ae5a4SJacob Faibussowitsch {
1704154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
170587828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1706d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1707d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1708b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
170939e00950SLois Curfman McInnes 
17103a40ed3dSBarry Smith   PetscFunctionBegin;
171128b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17127a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17137a0afa10SBarry Smith 
171470f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17157a0afa10SBarry Smith     /*
17167a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17177a0afa10SBarry Smith     */
17187a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1719b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1720d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17217a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17222205254eSKarl Rupp       if (max < tmp) max = tmp;
17237a0afa10SBarry Smith     }
17249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17257a0afa10SBarry Smith   }
17267a0afa10SBarry Smith 
1727aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1728abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
172939e00950SLois Curfman McInnes 
17309371c9d4SSatish Balay   pvA = &vworkA;
17319371c9d4SSatish Balay   pcA = &cworkA;
17329371c9d4SSatish Balay   pvB = &vworkB;
17339371c9d4SSatish Balay   pcB = &cworkB;
17349371c9d4SSatish Balay   if (!v) {
17359371c9d4SSatish Balay     pvA = NULL;
17369371c9d4SSatish Balay     pvB = NULL;
17379371c9d4SSatish Balay   }
17389371c9d4SSatish Balay   if (!idx) {
17399371c9d4SSatish Balay     pcA = NULL;
17409371c9d4SSatish Balay     if (!v) pcB = NULL;
17419371c9d4SSatish Balay   }
17429566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17439566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1744154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1745154123eaSLois Curfman McInnes 
174670f0671dSBarry Smith   cmap = mat->garray;
1747154123eaSLois Curfman McInnes   if (v || idx) {
1748154123eaSLois Curfman McInnes     if (nztot) {
1749154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1750b1d57f15SBarry Smith       PetscInt imark = -1;
1751154123eaSLois Curfman McInnes       if (v) {
175270f0671dSBarry Smith         *v = v_p = mat->rowvalues;
175339e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
175470f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1755154123eaSLois Curfman McInnes           else break;
1756154123eaSLois Curfman McInnes         }
1757154123eaSLois Curfman McInnes         imark = i;
175870f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
175970f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1760154123eaSLois Curfman McInnes       }
1761154123eaSLois Curfman McInnes       if (idx) {
176270f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
176370f0671dSBarry Smith         if (imark > -1) {
1764ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
176570f0671dSBarry Smith         } else {
1766154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
176770f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1768154123eaSLois Curfman McInnes             else break;
1769154123eaSLois Curfman McInnes           }
1770154123eaSLois Curfman McInnes           imark = i;
177170f0671dSBarry Smith         }
177270f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
177370f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
177439e00950SLois Curfman McInnes       }
17753f97c4b0SBarry Smith     } else {
1776f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1777f4259b30SLisandro Dalcin       if (v) *v = NULL;
17781ca473b0SSatish Balay     }
1779154123eaSLois Curfman McInnes   }
178039e00950SLois Curfman McInnes   *nz = nztot;
17819566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17829566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
178439e00950SLois Curfman McInnes }
178539e00950SLois Curfman McInnes 
1786d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1787d71ae5a4SJacob Faibussowitsch {
17887a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
17893a40ed3dSBarry Smith 
17903a40ed3dSBarry Smith   PetscFunctionBegin;
179128b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
17927a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
17933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179439e00950SLois Curfman McInnes }
179539e00950SLois Curfman McInnes 
1796ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1797d71ae5a4SJacob Faibussowitsch {
1798855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1799ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1800d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1801329f5518SBarry Smith   PetscReal        sum = 0.0;
1802fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
18036497c311SBarry Smith   PetscMPIInt      iN;
180404ca555eSLois Curfman McInnes 
18053a40ed3dSBarry Smith   PetscFunctionBegin;
180617699dbbSLois Curfman McInnes   if (aij->size == 1) {
18079566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
180837fa93a5SLois Curfman McInnes   } else {
18099566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18109566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
181104ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1812fff043a9SJunchao Zhang       v = amata;
181304ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18149371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18159371c9d4SSatish Balay         v++;
181604ca555eSLois Curfman McInnes       }
1817fff043a9SJunchao Zhang       v = bmata;
181804ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18199371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18209371c9d4SSatish Balay         v++;
182104ca555eSLois Curfman McInnes       }
1822462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18238f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18249566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18253a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1826329f5518SBarry Smith       PetscReal *tmp, *tmp2;
1827b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18289566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
18299566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2));
183004ca555eSLois Curfman McInnes       *norm = 0.0;
18319371c9d4SSatish Balay       v     = amata;
18329371c9d4SSatish Balay       jj    = amat->j;
183304ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18349371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18359371c9d4SSatish Balay         v++;
183604ca555eSLois Curfman McInnes       }
18379371c9d4SSatish Balay       v  = bmata;
18389371c9d4SSatish Balay       jj = bmat->j;
183904ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18409371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18419371c9d4SSatish Balay         v++;
184204ca555eSLois Curfman McInnes       }
18436497c311SBarry Smith       PetscCall(PetscMPIIntCast(mat->cmap->N, &iN));
1844462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(tmp, tmp2, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1845d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
184604ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
184704ca555eSLois Curfman McInnes       }
18489566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18499566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
18509566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18513a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1852329f5518SBarry Smith       PetscReal ntemp = 0.0;
1853d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18548e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
185504ca555eSLois Curfman McInnes         sum = 0.0;
185604ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18579371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18589371c9d4SSatish Balay           v++;
185904ca555eSLois Curfman McInnes         }
18608e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
186104ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18629371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18639371c9d4SSatish Balay           v++;
186404ca555eSLois Curfman McInnes         }
1865515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
186604ca555eSLois Curfman McInnes       }
1867462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18689566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1869ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18709566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18719566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
187237fa93a5SLois Curfman McInnes   }
18733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1874855ac2c5SLois Curfman McInnes }
1875855ac2c5SLois Curfman McInnes 
1876ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1877d71ae5a4SJacob Faibussowitsch {
1878a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1879a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1880071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1881071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1882a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1883ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1884b7c46309SBarry Smith 
18853a40ed3dSBarry Smith   PetscFunctionBegin;
18867fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18879371c9d4SSatish Balay   ma = A->rmap->n;
18889371c9d4SSatish Balay   na = A->cmap->n;
18899371c9d4SSatish Balay   mb = a->B->rmap->n;
18909371c9d4SSatish Balay   nb = a->B->cmap->n;
18919371c9d4SSatish Balay   ai = Aloc->i;
18929371c9d4SSatish Balay   aj = Aloc->j;
18939371c9d4SSatish Balay   bi = Bloc->i;
18949371c9d4SSatish Balay   bj = Bloc->j;
1895fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
189680bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
189780bcc5a1SJed Brown     PetscSFNode         *oloc;
1898713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
189980bcc5a1SJed Brown 
19009566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
190180bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19029566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1903cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
190480bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19059566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
190680bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
190780bcc5a1SJed Brown     /* map those to global */
19089566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19099566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19109566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19119566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
191257168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
191357168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19149566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1915d4bb536fSBarry Smith 
19169566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19179566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
19189566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs)));
19199566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19209566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19219566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1922fc4dec0aSBarry Smith   } else {
1923fc4dec0aSBarry Smith     B = *matout;
19249566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1925fc4dec0aSBarry Smith   }
1926b7c46309SBarry Smith 
1927f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1928a8661f62Sandi selinger   A_diag      = a->A;
1929a8661f62Sandi selinger   B_diag      = &b->A;
1930a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1931a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1932a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1933a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1934f79cb1a0Sandi selinger 
1935f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1936ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1937f79cb1a0Sandi selinger 
19384cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1939a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19407fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19419566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1942f79cb1a0Sandi selinger 
1943b7c46309SBarry Smith   /* copy over the B part */
19449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1946ce496241SStefano Zampini   pbv = bv;
1947d0f46423SBarry Smith   row = A->rmap->rstart;
19482205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
194961a2fbbaSHong Zhang   cols_tmp = cols;
1950da668accSHong Zhang   for (i = 0; i < mb; i++) {
1951da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19529566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19532205254eSKarl Rupp     row++;
1954720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1955720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1956b7c46309SBarry Smith   }
19579566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19589566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1959fc73b1b3SBarry Smith 
19609566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19619566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1962cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19630de55854SLois Curfman McInnes     *matout = B;
19640de55854SLois Curfman McInnes   } else {
19659566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19660de55854SLois Curfman McInnes   }
19673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1968b7c46309SBarry Smith }
1969b7c46309SBarry Smith 
1970ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1971d71ae5a4SJacob Faibussowitsch {
19724b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19734b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1974b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1975a008b906SSatish Balay 
19763a40ed3dSBarry Smith   PetscFunctionBegin;
19779566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19784b967eb1SSatish Balay   if (rr) {
19799566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
198008401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19814b967eb1SSatish Balay     /* Overlap communication with computation. */
19829566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1983a008b906SSatish Balay   }
19844b967eb1SSatish Balay   if (ll) {
19859566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
198608401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1987dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19884b967eb1SSatish Balay   }
19894b967eb1SSatish Balay   /* scale  the diagonal block */
1990dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19914b967eb1SSatish Balay 
19924b967eb1SSatish Balay   if (rr) {
19934b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
19949566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1995dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
19964b967eb1SSatish Balay   }
19973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1998a008b906SSatish Balay }
1999a008b906SSatish Balay 
2000ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2001d71ae5a4SJacob Faibussowitsch {
2002bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20033a40ed3dSBarry Smith 
20043a40ed3dSBarry Smith   PetscFunctionBegin;
20059566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2007bb5a7306SBarry Smith }
2008bb5a7306SBarry Smith 
2009ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2010d71ae5a4SJacob Faibussowitsch {
2011d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2012d4bb536fSBarry Smith   Mat         a, b, c, d;
2013ace3abfcSBarry Smith   PetscBool   flg;
2014d4bb536fSBarry Smith 
20153a40ed3dSBarry Smith   PetscFunctionBegin;
20169371c9d4SSatish Balay   a = matA->A;
20179371c9d4SSatish Balay   b = matA->B;
20189371c9d4SSatish Balay   c = matB->A;
20199371c9d4SSatish Balay   d = matB->B;
2020d4bb536fSBarry Smith 
20219566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
202248a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
2023462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2025d4bb536fSBarry Smith }
2026d4bb536fSBarry Smith 
2027ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2028d71ae5a4SJacob Faibussowitsch {
2029cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2030cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2031cb5b572fSBarry Smith 
2032cb5b572fSBarry Smith   PetscFunctionBegin;
203333f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
203433f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2035cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2036cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2037cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2038cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2039cb5b572fSBarry Smith        then copying the submatrices */
20409566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2041cb5b572fSBarry Smith   } else {
20429566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20439566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2044cb5b572fSBarry Smith   }
20459566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2047cb5b572fSBarry Smith }
2048cb5b572fSBarry Smith 
2049001ddc4fSHong Zhang /*
2050001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2051001ddc4fSHong Zhang    have different nonzero structure.
2052001ddc4fSHong Zhang */
2053d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2054d71ae5a4SJacob Faibussowitsch {
2055001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
205695b7e79eSJed Brown 
205795b7e79eSJed Brown   PetscFunctionBegin;
205895b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
205995b7e79eSJed Brown   for (i = 0; i < m; i++) {
20608e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2061001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2062001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
206395b7e79eSJed Brown     nnz[i] = 0;
206495b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2065001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2066001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
206795b7e79eSJed Brown       nnz[i]++;
206895b7e79eSJed Brown     }
206995b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
207095b7e79eSJed Brown   }
20713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207295b7e79eSJed Brown }
207395b7e79eSJed Brown 
2074001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2075d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2076d71ae5a4SJacob Faibussowitsch {
2077001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2078001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2079001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2080001ddc4fSHong Zhang 
2081001ddc4fSHong Zhang   PetscFunctionBegin;
20829566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2084001ddc4fSHong Zhang }
2085001ddc4fSHong Zhang 
2086ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2087d71ae5a4SJacob Faibussowitsch {
2088ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2089ac90fabeSBarry Smith 
2090ac90fabeSBarry Smith   PetscFunctionBegin;
2091ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20929566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
20939566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2094ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
20959566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2096ac90fabeSBarry Smith   } else {
20979f5f6813SShri Abhyankar     Mat       B;
20989f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2099d9d719b4SStefano Zampini 
21009566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21019566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21029566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21039566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21049566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21059566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21069566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21079566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21089566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21099566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21109566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21119566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21129566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2113ac90fabeSBarry Smith   }
21143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2115ac90fabeSBarry Smith }
2116ac90fabeSBarry Smith 
21172726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2118354c94deSBarry Smith 
2119ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2120d71ae5a4SJacob Faibussowitsch {
21215f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21225f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2123354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2124354c94deSBarry Smith 
21259566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21269566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21275f80ce2aSJacob Faibussowitsch   }
21283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2129354c94deSBarry Smith }
2130354c94deSBarry Smith 
2131ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2132d71ae5a4SJacob Faibussowitsch {
213399cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
213499cafbc1SBarry Smith 
213599cafbc1SBarry Smith   PetscFunctionBegin;
21369566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21379566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
213999cafbc1SBarry Smith }
214099cafbc1SBarry Smith 
2141ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2142d71ae5a4SJacob Faibussowitsch {
214399cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214499cafbc1SBarry Smith 
214599cafbc1SBarry Smith   PetscFunctionBegin;
21469566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21479566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214999cafbc1SBarry Smith }
215099cafbc1SBarry Smith 
2151ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2152d71ae5a4SJacob Faibussowitsch {
2153c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2154475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
2155475b8b61SHong Zhang   PetscScalar       *va, *vv;
2156475b8b61SHong Zhang   Vec                vB, vA;
2157475b8b61SHong Zhang   const PetscScalar *vb;
2158c91732d9SHong Zhang 
2159c91732d9SHong Zhang   PetscFunctionBegin;
2160c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21619566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2162475b8b61SHong Zhang 
21639566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
2164c91732d9SHong Zhang   if (idx) {
2165475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2166d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2167c91732d9SHong Zhang     }
2168c91732d9SHong Zhang   }
2169c91732d9SHong Zhang 
2170c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21729566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2173c91732d9SHong Zhang 
21749566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21759566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2176475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2177c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2178475b8b61SHong Zhang       vv[i] = vb[i];
2179c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2180475b8b61SHong Zhang     } else {
2181475b8b61SHong Zhang       vv[i] = va[i];
21829371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2183c91732d9SHong Zhang     }
2184c91732d9SHong Zhang   }
21859566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
21869566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
21879566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21889566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21899566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21909566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2192c91732d9SHong Zhang }
2193c91732d9SHong Zhang 
2194eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2195eede4a3fSMark Adams {
2196eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2197eede4a3fSMark Adams   Vec         vB, vA;
2198eede4a3fSMark Adams 
2199eede4a3fSMark Adams   PetscFunctionBegin;
2200c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2201eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2202c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2203eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2204eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2205eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2206eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2207eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2208eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2209eede4a3fSMark Adams }
2210eede4a3fSMark Adams 
2211ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2212d71ae5a4SJacob Faibussowitsch {
2213f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2214f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2215f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2216f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2217f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2218f07e67edSHong Zhang   Vec                diagV, offdiagV;
2219ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2220ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2221f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2222f07e67edSHong Zhang   Mat                B = mat->B;
2223f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2224c87e5d42SMatthew Knepley 
2225c87e5d42SMatthew Knepley   PetscFunctionBegin;
2226f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2227f07e67edSHong Zhang   if (A->cmap->N == n) {
22289566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22299566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22309566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22319566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22329566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22333ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2234f07e67edSHong Zhang   } else if (n == 0) {
2235f07e67edSHong Zhang     if (m) {
22369566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22379371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22389371c9d4SSatish Balay         a[r] = 0.0;
22399371c9d4SSatish Balay         if (idx) idx[r] = -1;
22409371c9d4SSatish Balay       }
22419566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2242f07e67edSHong Zhang     }
22433ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2244f07e67edSHong Zhang   }
2245f07e67edSHong Zhang 
22469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22479566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22489566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22499566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2250f07e67edSHong Zhang 
2251f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2253ce496241SStefano Zampini   ba = bav;
2254f07e67edSHong Zhang   bi = b->i;
2255f07e67edSHong Zhang   bj = b->j;
22569566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2257f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2258f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2259f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22609371c9d4SSatish Balay       offdiagA[r]   = *ba;
22619371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2262f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2263f07e67edSHong Zhang       offdiagA[r] = 0.0;
2264f07e67edSHong Zhang 
2265f07e67edSHong Zhang       /* Find first hole in the cmap */
2266f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2267f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2268f07e67edSHong Zhang         if (col > j && j < cstart) {
2269f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2270f07e67edSHong Zhang           break;
2271f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2272f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2273f07e67edSHong Zhang           break;
2274f07e67edSHong Zhang         }
2275f07e67edSHong Zhang       }
22764e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2277f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2278f07e67edSHong Zhang         if (ncols == 0) {
2279f07e67edSHong Zhang           if (cstart) {
2280f07e67edSHong Zhang             offdiagIdx[r] = 0;
2281f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2282f07e67edSHong Zhang         } else { /* ncols > 0 */
2283f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2284f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2285f07e67edSHong Zhang         }
2286f07e67edSHong Zhang       }
2287f07e67edSHong Zhang     }
2288f07e67edSHong Zhang 
2289f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22909371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22919371c9d4SSatish Balay         offdiagA[r]   = *ba;
22929371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
22939371c9d4SSatish Balay       }
22949371c9d4SSatish Balay       ba++;
22959371c9d4SSatish Balay       bj++;
2296f07e67edSHong Zhang     }
2297f07e67edSHong Zhang   }
2298f07e67edSHong Zhang 
22999566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23009566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2301f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2302f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2303f07e67edSHong Zhang       a[r] = diagA[r];
2304f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2305f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2306f07e67edSHong Zhang       a[r] = diagA[r];
2307c87e5d42SMatthew Knepley       if (idx) {
2308f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2309f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2310f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2311f07e67edSHong Zhang       }
2312f07e67edSHong Zhang     } else {
2313f07e67edSHong Zhang       a[r] = offdiagA[r];
2314f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2315c87e5d42SMatthew Knepley     }
2316c87e5d42SMatthew Knepley   }
23179566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23189566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23199566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23209566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23229566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23239566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2325c87e5d42SMatthew Knepley }
2326c87e5d42SMatthew Knepley 
2327ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2328d71ae5a4SJacob Faibussowitsch {
232903bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2330fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2331fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
233203bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
233303bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
233403bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2335ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2336ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2337fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2338fa213d2fSHong Zhang   Mat                B = mat->B;
2339fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
234003bc72f1SMatthew Knepley 
234103bc72f1SMatthew Knepley   PetscFunctionBegin;
2342fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2343fa213d2fSHong Zhang   if (A->cmap->N == n) {
23449566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23459566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23469566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23479566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23489566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23493ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2350fa213d2fSHong Zhang   } else if (n == 0) {
2351fa213d2fSHong Zhang     if (m) {
23529566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23539371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23549371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23559371c9d4SSatish Balay         if (idx) idx[r] = -1;
23569371c9d4SSatish Balay       }
23579566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2358fa213d2fSHong Zhang     }
23593ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2360fa213d2fSHong Zhang   }
2361fa213d2fSHong Zhang 
23629566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23639566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23649566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23659566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2366fa213d2fSHong Zhang 
2367fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2369ce496241SStefano Zampini   ba = bav;
2370fa213d2fSHong Zhang   bi = b->i;
2371fa213d2fSHong Zhang   bj = b->j;
23729566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2373fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2374fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2375fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23769371c9d4SSatish Balay       offdiagA[r]   = *ba;
23779371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2378fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2379fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2380fa213d2fSHong Zhang 
2381fa213d2fSHong Zhang       /* Find first hole in the cmap */
2382fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2383fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2384fa213d2fSHong Zhang         if (col > j && j < cstart) {
2385fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2386fa213d2fSHong Zhang           break;
2387fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2388fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2389fa213d2fSHong Zhang           break;
2390fa213d2fSHong Zhang         }
2391fa213d2fSHong Zhang       }
23924e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2393fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2394fa213d2fSHong Zhang         if (ncols == 0) {
2395fa213d2fSHong Zhang           if (cstart) {
2396fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2397fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2398fa213d2fSHong Zhang         } else { /* ncols > 0 */
2399fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2400fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2401fa213d2fSHong Zhang         }
2402fa213d2fSHong Zhang       }
2403fa213d2fSHong Zhang     }
2404fa213d2fSHong Zhang 
2405fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24069371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24079371c9d4SSatish Balay         offdiagA[r]   = *ba;
24089371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24099371c9d4SSatish Balay       }
24109371c9d4SSatish Balay       ba++;
24119371c9d4SSatish Balay       bj++;
2412fa213d2fSHong Zhang     }
2413fa213d2fSHong Zhang   }
2414fa213d2fSHong Zhang 
24159566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24169566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2417fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2418fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
241903bc72f1SMatthew Knepley       a[r] = diagA[r];
2420fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2421fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2422fa213d2fSHong Zhang       a[r] = diagA[r];
2423fa213d2fSHong Zhang       if (idx) {
2424fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
242503bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2426fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2427fa213d2fSHong Zhang       }
242803bc72f1SMatthew Knepley     } else {
242903bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2430fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
243103bc72f1SMatthew Knepley     }
243203bc72f1SMatthew Knepley   }
24339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24349566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24359566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24369566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24379566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24389566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24399566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244103bc72f1SMatthew Knepley }
244203bc72f1SMatthew Knepley 
2443ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2444d71ae5a4SJacob Faibussowitsch {
2445c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24461a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24471a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2448c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2449c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2450c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2451ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2452ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24531a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24541a254869SHong Zhang   Mat                B = mat->B;
24551a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2456c87e5d42SMatthew Knepley 
2457c87e5d42SMatthew Knepley   PetscFunctionBegin;
24581a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24591a254869SHong Zhang   if (A->cmap->N == n) {
24609566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24619566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24629566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24639566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24649566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24653ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24661a254869SHong Zhang   } else if (n == 0) {
24671a254869SHong Zhang     if (m) {
24689566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24699371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24709371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24719371c9d4SSatish Balay         if (idx) idx[r] = -1;
24729371c9d4SSatish Balay       }
24739566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24741a254869SHong Zhang     }
24753ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24761a254869SHong Zhang   }
24771a254869SHong Zhang 
24789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24799566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24809566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24819566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24821a254869SHong Zhang 
24831a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24849566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2485ce496241SStefano Zampini   ba = bav;
24861a254869SHong Zhang   bi = b->i;
24871a254869SHong Zhang   bj = b->j;
24889566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24891a254869SHong Zhang   for (r = 0; r < m; r++) {
24901a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24911a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24929371c9d4SSatish Balay       offdiagA[r]   = *ba;
24939371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
24941a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
24951a254869SHong Zhang       offdiagA[r] = 0.0;
24961a254869SHong Zhang 
24971a254869SHong Zhang       /* Find first hole in the cmap */
24981a254869SHong Zhang       for (j = 0; j < ncols; j++) {
24991a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25001a254869SHong Zhang         if (col > j && j < cstart) {
25011a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25021a254869SHong Zhang           break;
25031a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25041a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25051a254869SHong Zhang           break;
25061a254869SHong Zhang         }
25071a254869SHong Zhang       }
25084e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25091a254869SHong Zhang         /* a hole is outside compressed Bcols */
25101a254869SHong Zhang         if (ncols == 0) {
25111a254869SHong Zhang           if (cstart) {
25121a254869SHong Zhang             offdiagIdx[r] = 0;
25131a254869SHong Zhang           } else offdiagIdx[r] = cend;
25141a254869SHong Zhang         } else { /* ncols > 0 */
25151a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25161a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25171a254869SHong Zhang         }
25181a254869SHong Zhang       }
25191a254869SHong Zhang     }
25201a254869SHong Zhang 
25211a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25229371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25239371c9d4SSatish Balay         offdiagA[r]   = *ba;
25249371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25259371c9d4SSatish Balay       }
25269371c9d4SSatish Balay       ba++;
25279371c9d4SSatish Balay       bj++;
25281a254869SHong Zhang     }
25291a254869SHong Zhang   }
25301a254869SHong Zhang 
25319566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25329566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25331a254869SHong Zhang   for (r = 0; r < m; ++r) {
25341a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2535c87e5d42SMatthew Knepley       a[r] = diagA[r];
25361a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25371a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25381a254869SHong Zhang       a[r] = diagA[r];
25391a254869SHong Zhang       if (idx) {
25401a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2541c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25421a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25431a254869SHong Zhang       }
2544c87e5d42SMatthew Knepley     } else {
2545c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25461a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2547c87e5d42SMatthew Knepley     }
2548c87e5d42SMatthew Knepley   }
25499566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25509566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25519566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25529566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25549566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25559566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2557c87e5d42SMatthew Knepley }
2558c87e5d42SMatthew Knepley 
2559d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2560d71ae5a4SJacob Faibussowitsch {
2561f6d58c54SBarry Smith   Mat *dummy;
25625494a064SHong Zhang 
25635494a064SHong Zhang   PetscFunctionBegin;
25649566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2565f6d58c54SBarry Smith   *newmat = *dummy;
25669566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25685494a064SHong Zhang }
25695494a064SHong Zhang 
2570ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2571d71ae5a4SJacob Faibussowitsch {
2572bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2573bbead8a2SBarry Smith 
2574bbead8a2SBarry Smith   PetscFunctionBegin;
25759566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25767b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2578bbead8a2SBarry Smith }
2579bbead8a2SBarry Smith 
2580d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2581d71ae5a4SJacob Faibussowitsch {
258273a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
258373a71a0fSBarry Smith 
258473a71a0fSBarry Smith   PetscFunctionBegin;
258508401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25869566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2587679944adSJunchao Zhang   if (x->assembled) {
25889566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2589679944adSJunchao Zhang   } else {
25909566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2591679944adSJunchao Zhang   }
25929566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
25939566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
25943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
259573a71a0fSBarry Smith }
2596bbead8a2SBarry Smith 
2597ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2598d71ae5a4SJacob Faibussowitsch {
2599b1b1104fSBarry Smith   PetscFunctionBegin;
2600b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2601b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2603b1b1104fSBarry Smith }
2604b1b1104fSBarry Smith 
2605b1b1104fSBarry Smith /*@
2606f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2607f2afee66SBarry Smith 
26082ef1f0ffSBarry Smith   Not Collective
2609f2afee66SBarry Smith 
2610f2afee66SBarry Smith   Input Parameter:
2611f2afee66SBarry Smith . A - the matrix
2612f2afee66SBarry Smith 
2613f2afee66SBarry Smith   Output Parameter:
2614f2afee66SBarry Smith . nz - the number of nonzeros
2615f2afee66SBarry Smith 
2616f2afee66SBarry Smith   Level: advanced
2617f2afee66SBarry Smith 
2618fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2619f2afee66SBarry Smith @*/
2620d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2621d71ae5a4SJacob Faibussowitsch {
2622f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2623f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2624dfebb78cSStefano Zampini   PetscBool   isaij;
2625f2afee66SBarry Smith 
2626f2afee66SBarry Smith   PetscFunctionBegin;
2627dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2628dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2629f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2631f2afee66SBarry Smith }
2632f2afee66SBarry Smith 
2633f2afee66SBarry Smith /*@
2634b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2635b1b1104fSBarry Smith 
2636c3339decSBarry Smith   Collective
2637b1b1104fSBarry Smith 
2638b1b1104fSBarry Smith   Input Parameters:
2639b1b1104fSBarry Smith + A  - the matrix
264011a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2641b1b1104fSBarry Smith 
264296a0c994SBarry Smith   Level: advanced
264396a0c994SBarry Smith 
2644fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2645b1b1104fSBarry Smith @*/
2646d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2647d71ae5a4SJacob Faibussowitsch {
2648b1b1104fSBarry Smith   PetscFunctionBegin;
2649cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2651b1b1104fSBarry Smith }
2652b1b1104fSBarry Smith 
2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject)
2654d71ae5a4SJacob Faibussowitsch {
2655b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2656b1b1104fSBarry Smith 
2657b1b1104fSBarry Smith   PetscFunctionBegin;
2658d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2659b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26609566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26611baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2662d0609cedSBarry Smith   PetscOptionsHeadEnd();
26633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2664b1b1104fSBarry Smith }
2665b1b1104fSBarry Smith 
2666ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2667d71ae5a4SJacob Faibussowitsch {
26687d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2669c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26707d68702bSBarry Smith 
26717d68702bSBarry Smith   PetscFunctionBegin;
2672c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26739566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26745519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2675b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26769566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2677b83222d8SBarry Smith     aij->nonew = nonew;
26787d68702bSBarry Smith   }
26799566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26817d68702bSBarry Smith }
26827d68702bSBarry Smith 
2683ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2684d71ae5a4SJacob Faibussowitsch {
26853b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26863b49f96aSBarry Smith 
26873b49f96aSBarry Smith   PetscFunctionBegin;
268808401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26899566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26903b49f96aSBarry Smith   if (d) {
26913b49f96aSBarry Smith     PetscInt rstart;
26929566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
26933b49f96aSBarry Smith     *d += rstart;
26943b49f96aSBarry Smith   }
26953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26963b49f96aSBarry Smith }
26973b49f96aSBarry Smith 
2698ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2699d71ae5a4SJacob Faibussowitsch {
2700a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2701a8ee9fb5SBarry Smith 
2702a8ee9fb5SBarry Smith   PetscFunctionBegin;
27039566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2705a8ee9fb5SBarry Smith }
27063b49f96aSBarry Smith 
270758c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2708dec0b466SHong Zhang {
2709dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2710dec0b466SHong Zhang 
2711dec0b466SHong Zhang   PetscFunctionBegin;
271258c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
271358c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2715dec0b466SHong Zhang }
2716dec0b466SHong Zhang 
2717cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2718cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2719cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2720cda55fadSBarry Smith                                        MatMult_MPIAIJ,
272197304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27227c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27237c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2724f4259b30SLisandro Dalcin                                        NULL,
2725f4259b30SLisandro Dalcin                                        NULL,
2726f4259b30SLisandro Dalcin                                        NULL,
2727f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2728f4259b30SLisandro Dalcin                                        NULL,
2729f4259b30SLisandro Dalcin                                        NULL,
273041f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2731b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
273297304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2733cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2734cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2735cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2736cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
273797304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2738cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2739cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2740cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2741d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2742f4259b30SLisandro Dalcin                                        NULL,
2743f4259b30SLisandro Dalcin                                        NULL,
2744f4259b30SLisandro Dalcin                                        NULL,
2745f4259b30SLisandro Dalcin                                        NULL,
274626cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2747f4259b30SLisandro Dalcin                                        NULL,
2748f4259b30SLisandro Dalcin                                        NULL,
2749a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2750f4259b30SLisandro Dalcin                                        NULL,
2751d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2752f4259b30SLisandro Dalcin                                        NULL,
2753f4259b30SLisandro Dalcin                                        NULL,
2754f4259b30SLisandro Dalcin                                        NULL,
2755f4259b30SLisandro Dalcin                                        NULL,
2756d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27577dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2758cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2759cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2760cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2761d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2762cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27637d68702bSBarry Smith                                        MatShift_MPIAIJ,
276499e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2765564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
276673a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27678a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27688a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2769f4259b30SLisandro Dalcin                                        NULL,
2770f4259b30SLisandro Dalcin                                        NULL,
277193dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2772f4259b30SLisandro Dalcin                                        NULL,
2773cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
277472e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2775f4259b30SLisandro Dalcin                                        NULL,
27767dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2777e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2778e03a110bSBarry Smith                                        MatView_MPIAIJ,
2779f4259b30SLisandro Dalcin                                        NULL,
2780f4259b30SLisandro Dalcin                                        NULL,
2781f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2782f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2783f4259b30SLisandro Dalcin                                        NULL,
2784f4259b30SLisandro Dalcin                                        NULL,
2785f4259b30SLisandro Dalcin                                        NULL,
2786d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2787c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2788f4259b30SLisandro Dalcin                                        NULL,
2789f4259b30SLisandro Dalcin                                        NULL,
2790f4259b30SLisandro Dalcin                                        NULL,
2791f4259b30SLisandro Dalcin                                        NULL,
27923acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2793b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2794f4259b30SLisandro Dalcin                                        NULL,
2795f4259b30SLisandro Dalcin                                        NULL,
2796f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2797f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
2799f4259b30SLisandro Dalcin                                        NULL,
28005bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
28016cff0a6bSPierre Jolivet                                        NULL,
2802f4259b30SLisandro Dalcin                                        NULL,
2803f4259b30SLisandro Dalcin                                        NULL,
2804f4259b30SLisandro Dalcin                                        NULL,
2805f4259b30SLisandro Dalcin                                        NULL,
2806f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2807f4259b30SLisandro Dalcin                                        NULL,
280826be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2809f4259b30SLisandro Dalcin                                        NULL,
2810f4259b30SLisandro Dalcin                                        NULL,
2811cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2812f4259b30SLisandro Dalcin                                        NULL,
2813f4259b30SLisandro Dalcin                                        NULL,
2814f4259b30SLisandro Dalcin                                        NULL,
2815b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28164222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2817f4259b30SLisandro Dalcin                                        NULL,
2818f4259b30SLisandro Dalcin                                        NULL,
28192fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2820f4259b30SLisandro Dalcin                                        NULL,
2821d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
282299cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
282369db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2824f4259b30SLisandro Dalcin                                        NULL,
2825f4259b30SLisandro Dalcin                                        NULL,
2826f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2827f4259b30SLisandro Dalcin                                        NULL,
28285494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2829f4259b30SLisandro Dalcin                                        NULL,
28303b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2831d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2832f4259b30SLisandro Dalcin                                        NULL,
2833c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2834f4259b30SLisandro Dalcin                                        NULL,
2835f4259b30SLisandro Dalcin                                        NULL,
2836b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2837f4259b30SLisandro Dalcin                                        NULL,
2838f4259b30SLisandro Dalcin                                        NULL,
2839f4259b30SLisandro Dalcin                                        NULL,
2840b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2841f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2842a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2843bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2844a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28457dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2846f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2847f4259b30SLisandro Dalcin                                        NULL,
2848f4259b30SLisandro Dalcin                                        NULL,
2849187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2850f4259b30SLisandro Dalcin                                        NULL,
2851f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2852f4259b30SLisandro Dalcin                                        NULL,
2853f4259b30SLisandro Dalcin                                        NULL,
2854f4259b30SLisandro Dalcin                                        NULL,
2855f4259b30SLisandro Dalcin                                        NULL,
285646533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2857f4259b30SLisandro Dalcin                                        NULL,
2858f4259b30SLisandro Dalcin                                        NULL,
28599c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2860a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28614222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2862f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2863f4259b30SLisandro Dalcin                                        NULL,
286472833a62Smarkadams4                                        NULL,
286572833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28662d776b49SBarry Smith                                        NULL,
2867dec0b466SHong Zhang                                        /*150*/ NULL,
2868eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
28694cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIAIJ,
287042ce410bSJunchao Zhang                                        NULL,
287142ce410bSJunchao Zhang                                        NULL,
28724cc2b5b5SPierre Jolivet                                        NULL};
287336ce4990SBarry Smith 
2874ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2875d71ae5a4SJacob Faibussowitsch {
28762e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28772e8a6d31SBarry Smith 
28782e8a6d31SBarry Smith   PetscFunctionBegin;
28799566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28809566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28822e8a6d31SBarry Smith }
28832e8a6d31SBarry Smith 
2884ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2885d71ae5a4SJacob Faibussowitsch {
28862e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28872e8a6d31SBarry Smith 
28882e8a6d31SBarry Smith   PetscFunctionBegin;
28899566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28909566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28922e8a6d31SBarry Smith }
28938a729477SBarry Smith 
2894d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2895d71ae5a4SJacob Faibussowitsch {
2896ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
28975d2a9ed1SStefano Zampini   PetscMPIInt size;
2898a23d5eceSKris Buschelman 
2899a23d5eceSKris Buschelman   PetscFunctionBegin;
2900ad79cf63SBarry Smith   if (B->hash_active) {
2901aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2902ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2903ad79cf63SBarry Smith   }
29049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2906899cda47SBarry Smith 
2907cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2908eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2909cb7b82ddSBarry Smith #else
29109566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2911cb7b82ddSBarry Smith #endif
29129566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29139566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29149566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2915cb7b82ddSBarry Smith 
29169566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2917c508b908SBarry Smith 
2918c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29199566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29209566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29219566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29229566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29239566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2924c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2925cb7b82ddSBarry Smith 
2926c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2927ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29289566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29309566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29319566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2932c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2933899cda47SBarry Smith 
29349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29359566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2936526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2937cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
293815001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2940a23d5eceSKris Buschelman }
2941a23d5eceSKris Buschelman 
2942ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2943d71ae5a4SJacob Faibussowitsch {
2944ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2945846b4da1SFande Kong 
2946846b4da1SFande Kong   PetscFunctionBegin;
2947846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29499566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2950846b4da1SFande Kong 
2951846b4da1SFande Kong #if defined(PETSC_USE_CTABLE)
2952eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2953846b4da1SFande Kong #else
29549566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2955846b4da1SFande Kong #endif
29569566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29579566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29589566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2959846b4da1SFande Kong 
29609566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->A));
29619566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->B));
2962846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2963846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2964846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
29653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2966846b4da1SFande Kong }
2967846b4da1SFande Kong 
2968d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2969d71ae5a4SJacob Faibussowitsch {
2970d6dfbf8fSBarry Smith   Mat         mat;
2971416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2972d6dfbf8fSBarry Smith 
29733a40ed3dSBarry Smith   PetscFunctionBegin;
2974f4259b30SLisandro Dalcin   *newmat = NULL;
29759566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29769566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29779566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29789566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2979273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2980e1b6402fSHong Zhang 
2981d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2982501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2983e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2984d6dfbf8fSBarry Smith 
298517699dbbSLois Curfman McInnes   a->size         = oldmat->size;
298617699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2987e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2988e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2989501880eeSStefano Zampini   a->rowindices   = NULL;
2990501880eeSStefano Zampini   a->rowvalues    = NULL;
2991bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2992d6dfbf8fSBarry Smith 
29939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2995420957c1SBarry Smith   if (matin->hash_active) {
2996420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2997420957c1SBarry Smith   } else {
2998420957c1SBarry Smith     mat->preallocated = matin->preallocated;
29992ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
3000aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3001eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
3002b1fc9764SSatish Balay #else
30039566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
30049566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
3005b1fc9764SSatish Balay #endif
3006501880eeSStefano Zampini     } else a->colmap = NULL;
30073f41c07dSBarry Smith     if (oldmat->garray) {
3008b1d57f15SBarry Smith       PetscInt len;
3009d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30109566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30119566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3012501880eeSStefano Zampini     } else a->garray = NULL;
3013d6dfbf8fSBarry Smith 
30140de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30150de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30160de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3017aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3018cff58d65SJunchao Zhang     if (oldmat->Mvctx) {
3019cff58d65SJunchao Zhang       a->Mvctx = oldmat->Mvctx;
3020cff58d65SJunchao Zhang       PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx));
3021cff58d65SJunchao Zhang     }
30229566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30239566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3024420957c1SBarry Smith   }
30259566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30268a729477SBarry Smith   *newmat = mat;
30273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30288a729477SBarry Smith }
3029416022c9SBarry Smith 
3030d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3031d71ae5a4SJacob Faibussowitsch {
303252f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
303352f91c60SVaclav Hapla 
303452f91c60SVaclav Hapla   PetscFunctionBegin;
303552f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
303652f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3037c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30389566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30399566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30409566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
304152f91c60SVaclav Hapla   if (isbinary) {
30429566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
304352f91c60SVaclav Hapla   } else if (ishdf5) {
304452f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30459566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
304652f91c60SVaclav Hapla #else
304752f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
304852f91c60SVaclav Hapla #endif
304952f91c60SVaclav Hapla   } else {
305098921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
305152f91c60SVaclav Hapla   }
30523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
305352f91c60SVaclav Hapla }
305452f91c60SVaclav Hapla 
3055d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3056d71ae5a4SJacob Faibussowitsch {
30573ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30583ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30593ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30608fb81238SShri Abhyankar 
30618fb81238SShri Abhyankar   PetscFunctionBegin;
30629566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30638fb81238SShri Abhyankar 
30643ea6fe3dSLisandro Dalcin   /* read in matrix header */
30659566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
306608401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30679371c9d4SSatish Balay   M  = header[1];
30689371c9d4SSatish Balay   N  = header[2];
30699371c9d4SSatish Balay   nz = header[3];
307008401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
307108401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
307208401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
307308ea439dSMark F. Adams 
30743ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30759566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30763ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30773ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30783ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30799566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30809566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30818fb81238SShri Abhyankar 
30823ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30839566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3084aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30858fb81238SShri Abhyankar 
30863ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30879566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30899566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30909371c9d4SSatish Balay   rowidxs[0] = 0;
30919371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
30921690c2aeSBarry Smith   if (nz != PETSC_INT_MAX) {
3093462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
309408401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
309538b83642SBarry Smith   }
309638b83642SBarry Smith 
30973ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
30989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
30999566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
31009566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
31013ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
31029566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
31039566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
31049566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
31053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31068fb81238SShri Abhyankar }
31078fb81238SShri Abhyankar 
31083782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3109ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3110d71ae5a4SJacob Faibussowitsch {
31114aa3045dSJed Brown   IS          iscol_local;
3112c5e4d11fSDmitry Karpeev   PetscBool   isstride;
3113c5e4d11fSDmitry Karpeev   PetscMPIInt lisstride = 0, gisstride;
31143782ecc7SHong Zhang 
31153782ecc7SHong Zhang   PetscFunctionBegin;
31163782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31179566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31183782ecc7SHong Zhang 
3119c5e4d11fSDmitry Karpeev   if (isstride) {
3120c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31219566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31229566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31239566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
3124c5e4d11fSDmitry Karpeev     if (mstart == start && mlen - mstart == len) lisstride = 1;
3125c5e4d11fSDmitry Karpeev   }
31263782ecc7SHong Zhang 
3127462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3128c5e4d11fSDmitry Karpeev   if (gisstride) {
3129c5e4d11fSDmitry Karpeev     PetscInt N;
31309566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31319566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31329566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31339566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3134c5e4d11fSDmitry Karpeev   } else {
3135c5bfad50SMark F. Adams     PetscInt cbs;
31369566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31379566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31389566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3139b79d0421SJed Brown   }
31403782ecc7SHong Zhang 
31413782ecc7SHong Zhang   *isseq = iscol_local;
31423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3143c5e4d11fSDmitry Karpeev }
31448d2139bdSHong Zhang 
3145ddfdf956SHong Zhang /*
31469c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31479c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3148ddfdf956SHong Zhang 
3149ddfdf956SHong Zhang  Input Parameters:
315027430b45SBarry Smith +   mat - matrix
315127430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31529c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
315327430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3154ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
315527430b45SBarry Smith 
315627430b45SBarry Smith  Output Parameters:
315727430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
315827430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
315927430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
316027430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3161ddfdf956SHong Zhang  */
3162ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[])
3163d71ae5a4SJacob Faibussowitsch {
3164040216a4SHong Zhang   Vec             x, cmap;
3165040216a4SHong Zhang   const PetscInt *is_idx;
3166040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31679c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3168040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3169040216a4SHong Zhang   Mat             B    = a->B;
3170040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3171a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31728b3fa1f7SHong Zhang   MPI_Comm        comm;
31733a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31743782ecc7SHong Zhang 
31753782ecc7SHong Zhang   PetscFunctionBegin;
31769566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31779566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31788b3fa1f7SHong Zhang 
3179ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31809566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31819566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31829566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31839566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31840a351717SHong Zhang 
31859c988bcaSHong Zhang   /* Get start indices */
31869566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3187ddfdf956SHong Zhang   isstart -= ncols;
31889566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3189040216a4SHong Zhang 
31909566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31919566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31929566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3194ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31958b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3196ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31979c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
31988b3fa1f7SHong Zhang   }
31999566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
32009566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
32019566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
32028b3fa1f7SHong Zhang 
32039c988bcaSHong Zhang   /* Get iscol_d */
32049566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
32059566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
32069566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3207feb78a15SHong Zhang 
32089c988bcaSHong Zhang   /* Get isrow_d */
32099566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3210feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32129566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32139c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32149566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3215feb78a15SHong Zhang 
32169566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32179566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32189566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3219feb78a15SHong Zhang 
32209c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32219566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32229566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3223ddfdf956SHong Zhang 
32249566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
322507250d77SHong Zhang 
32269566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32279566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
322864efcef9SHong Zhang 
32299c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3230ddfdf956SHong Zhang   /* off-process column indices */
32319c988bcaSHong Zhang   count = 0;
32329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3234feb78a15SHong Zhang 
32359566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32369566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32378b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3238f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32399c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32401c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32411c645242SHong Zhang       count++;
32428b3fa1f7SHong Zhang     }
32438b3fa1f7SHong Zhang   }
32449566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32459566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
324607250d77SHong Zhang 
32479566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3248b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3249b6d9b4e0SHong Zhang 
32509566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32519c988bcaSHong Zhang   *garray = cmap1;
32529c988bcaSHong Zhang 
32539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32549566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32559566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3257040216a4SHong Zhang }
3258040216a4SHong Zhang 
3259b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3260d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3261d71ae5a4SJacob Faibussowitsch {
3262b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32631fd43edeSHong Zhang   Mat         M = NULL;
32643b00a383SHong Zhang   MPI_Comm    comm;
3265b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32663b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3267b20e2604SHong Zhang   PetscInt    n;
32683b00a383SHong Zhang 
32693b00a383SHong Zhang   PetscFunctionBegin;
32709566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32713b00a383SHong Zhang 
32723b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3273b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32749566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
327528b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32763b00a383SHong Zhang 
32779566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
327828b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32793b00a383SHong Zhang 
32809566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
328128b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32823b00a383SHong Zhang 
3283b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3284b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32859566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32869566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
328748a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32889566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32899566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32903b00a383SHong Zhang 
32913b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
32929c988bcaSHong Zhang     const PetscInt *garray;
3293b20e2604SHong Zhang     PetscInt        BsubN;
32943b00a383SHong Zhang 
3295b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32969566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32973b00a383SHong Zhang 
3298b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
32999566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
33009566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
33013b00a383SHong Zhang 
33029c988bcaSHong Zhang     /* Create submatrix M */
33039566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M));
33043b00a383SHong Zhang 
3305b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3306b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33077cfce09cSHong Zhang 
33089566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3309b20e2604SHong Zhang     n = asub->B->cmap->N;
3310b20e2604SHong Zhang     if (BsubN > n) {
3311c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33127cfce09cSHong Zhang       const PetscInt *idx;
33139c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33149566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33157cfce09cSHong Zhang 
33169566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33177cfce09cSHong Zhang       j = 0;
33189566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3319b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33207cfce09cSHong Zhang         if (j >= BsubN) break;
33219c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33227cfce09cSHong Zhang 
33239c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33247cfce09cSHong Zhang           idx_new[i] = idx[j++];
332598921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33267cfce09cSHong Zhang       }
33279566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33287cfce09cSHong Zhang 
33299566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33309566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33317cfce09cSHong Zhang 
3332b20e2604SHong Zhang     } else if (BsubN < n) {
333398921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3334b20e2604SHong Zhang     }
33357cfce09cSHong Zhang 
33369566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3337b20e2604SHong Zhang     *submat = M;
33383b00a383SHong Zhang 
3339e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33409566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33419566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33423b00a383SHong Zhang 
33439566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33449566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33453b00a383SHong Zhang 
33469566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33479566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33483b00a383SHong Zhang   }
33493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33503b00a383SHong Zhang }
33513b00a383SHong Zhang 
3352d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3353d71ae5a4SJacob Faibussowitsch {
33541358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33553782ecc7SHong Zhang   PetscInt  csize;
335618e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33574a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33583782ecc7SHong Zhang   MPI_Comm  comm;
33593782ecc7SHong Zhang 
33603782ecc7SHong Zhang   PetscFunctionBegin;
3361bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3362a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33638f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33649566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3365d5761cdaSHong Zhang     if (isrow_d) {
3366d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3367d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3368d5761cdaSHong Zhang     } else {
33699566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3370d5761cdaSHong Zhang       if (iscol_local) {
3371d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3372d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3373d5761cdaSHong Zhang       }
3374d5761cdaSHong Zhang     }
33758f69fa7bSHong Zhang   } else {
3376e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
337718e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33789566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33793782ecc7SHong Zhang     if (!n) {
338018e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33813782ecc7SHong Zhang     } else {
33829566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33839566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3384ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33858f69fa7bSHong Zhang     }
33863782ecc7SHong Zhang 
3387e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
338818e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33899566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
339018e627e3SHong Zhang     if (!n) {
339118e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
339218e627e3SHong Zhang     } else {
33939566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
33949566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
339518e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
339618e627e3SHong Zhang     }
339718e627e3SHong Zhang 
33989566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3399462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
340018e627e3SHong Zhang     sameRowDist = tsameDist[0];
340118e627e3SHong Zhang   }
340218e627e3SHong Zhang 
340318e627e3SHong Zhang   if (sameRowDist) {
3404b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
34053b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
34069566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34073ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3408b20e2604SHong Zhang     } else { /* sameRowDist */
34093b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34101358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34111358a193SHong Zhang         PetscBool sorted;
34129566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34139566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34149566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
341508401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34161358a193SHong Zhang 
34179566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34181358a193SHong Zhang         if (sorted) {
34191358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34209566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34213ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34223782ecc7SHong Zhang         }
34231358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
342448c0d076SHong Zhang         IS iscol_sub;
34259566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
342648c0d076SHong Zhang         if (iscol_sub) {
34279566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34283ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
342948c0d076SHong Zhang         }
34301358a193SHong Zhang       }
34311358a193SHong Zhang     }
34321358a193SHong Zhang   }
34333782ecc7SHong Zhang 
3434bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34353782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34369566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
343728b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34383782ecc7SHong Zhang   } else {
343948a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34401358a193SHong Zhang   }
34413782ecc7SHong Zhang 
34429566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34439566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34448f69fa7bSHong Zhang 
3445b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34469566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34479566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3448b79d0421SJed Brown   }
34493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34504aa3045dSJed Brown }
34514aa3045dSJed Brown 
3452feb78a15SHong Zhang /*@C
345311a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3454feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3455feb78a15SHong Zhang 
3456d083f849SBarry Smith   Collective
3457feb78a15SHong Zhang 
3458feb78a15SHong Zhang   Input Parameters:
3459feb78a15SHong Zhang + comm   - MPI communicator
3460feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3461b20e2604SHong Zhang . B      - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine
34622ef1f0ffSBarry Smith - garray - global index of `B` columns
3463feb78a15SHong Zhang 
3464feb78a15SHong Zhang   Output Parameter:
34652ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
346627430b45SBarry Smith 
3467feb78a15SHong Zhang   Level: advanced
3468feb78a15SHong Zhang 
3469feb78a15SHong Zhang   Notes:
347011a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
347111a5261eSBarry Smith 
34722ef1f0ffSBarry Smith   `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore.
3473feb78a15SHong Zhang 
34741cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3475feb78a15SHong Zhang @*/
3476d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat)
3477d71ae5a4SJacob Faibussowitsch {
3478feb78a15SHong Zhang   Mat_MPIAIJ        *maij;
3479e489de8fSHong Zhang   Mat_SeqAIJ        *b  = (Mat_SeqAIJ *)B->data, *bnew;
3480a5348796SHong Zhang   PetscInt          *oi = b->i, *oj = b->j, i, nz, col;
3481ce496241SStefano Zampini   const PetscScalar *oa;
3482e489de8fSHong Zhang   Mat                Bnew;
3483feb78a15SHong Zhang   PetscInt           m, n, N;
34844ab4d6f4SRichard Tran Mills   MatType            mpi_mat_type;
3485feb78a15SHong Zhang 
3486feb78a15SHong Zhang   PetscFunctionBegin;
34879566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
34889566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
348908401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
349037a5e0faSPierre Jolivet   PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3491b6d9b4e0SHong Zhang   /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */
349208401ef6SPierre Jolivet   /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */
3493feb78a15SHong Zhang 
3494e489de8fSHong Zhang   /* Get global columns of mat */
3495462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm));
3496feb78a15SHong Zhang 
34979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N));
34984ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
34994ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
35004ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
35014ab4d6f4SRichard Tran Mills 
350237a5e0faSPierre Jolivet   if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3503feb78a15SHong Zhang   maij = (Mat_MPIAIJ *)(*mat)->data;
3504feb78a15SHong Zhang 
3505feb78a15SHong Zhang   (*mat)->preallocated = PETSC_TRUE;
3506feb78a15SHong Zhang 
35079566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
35089566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3509feb78a15SHong Zhang 
3510e489de8fSHong Zhang   /* Set A as diagonal portion of *mat */
3511feb78a15SHong Zhang   maij->A = A;
3512feb78a15SHong Zhang 
3513a5348796SHong Zhang   nz = oi[m];
3514a5348796SHong Zhang   for (i = 0; i < nz; i++) {
3515a5348796SHong Zhang     col   = oj[i];
3516a5348796SHong Zhang     oj[i] = garray[col];
3517feb78a15SHong Zhang   }
3518feb78a15SHong Zhang 
3519e489de8fSHong Zhang   /* Set Bnew as off-diagonal portion of *mat */
35209566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &oa));
35219566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew));
35229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &oa));
3523e489de8fSHong Zhang   bnew        = (Mat_SeqAIJ *)Bnew->data;
3524e489de8fSHong Zhang   bnew->maxnz = b->maxnz; /* allocated nonzeros of B */
3525e489de8fSHong Zhang   maij->B     = Bnew;
3526d5761cdaSHong Zhang 
352708401ef6SPierre Jolivet   PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N);
3528d5761cdaSHong Zhang 
3529d5761cdaSHong Zhang   b->free_a  = PETSC_FALSE;
3530d5761cdaSHong Zhang   b->free_ij = PETSC_FALSE;
35319566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&B));
3532d5761cdaSHong Zhang 
3533e489de8fSHong Zhang   bnew->free_a  = PETSC_TRUE;
3534e489de8fSHong Zhang   bnew->free_ij = PETSC_TRUE;
3535feb78a15SHong Zhang 
3536a5348796SHong Zhang   /* condense columns of maij->B */
35379566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
35389566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
35399566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
35409566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
35419566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3543feb78a15SHong Zhang }
3544feb78a15SHong Zhang 
3545ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35464aa3045dSJed Brown 
3547d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3548d71ae5a4SJacob Faibussowitsch {
354998b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
355085f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
355198b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35521fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
355398b658c4SHong Zhang   MatScalar      *aa;
355400e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3555a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
355698b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
355798b658c4SHong Zhang   IS              iscol_sub, iscmap;
355898b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
355918e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3560a31a438cSHong Zhang   MPI_Comm        comm;
35617e2c5f70SBarry Smith 
3562a0ff6018SBarry Smith   PetscFunctionBegin;
35639566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3564d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35659566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
356628b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35679566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3568d5761cdaSHong Zhang 
35699566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
357028b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3571d5761cdaSHong Zhang 
35729566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
357328b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3574d5761cdaSHong Zhang 
35759566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3576d5761cdaSHong Zhang 
3577d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35783b00a383SHong Zhang     PetscBool flg;
35793b00a383SHong Zhang 
35809566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35819566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3582bcae8d28SHong Zhang 
35833b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3584366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35859566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3586366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3587462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3588366a327dSHong Zhang     if (allcolumns) {
3589366a327dSHong Zhang       iscol_sub = iscol_local;
35909566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35919566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3592366a327dSHong Zhang 
35933b00a383SHong Zhang     } else {
35941358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3595244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35969566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35979566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
35989566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
35998d2139bdSHong Zhang       count = 0;
3600a31a438cSHong Zhang       k     = 0;
3601a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3602a31a438cSHong Zhang         j = is_idx[i];
3603a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3604a31a438cSHong Zhang           /* diagonal part of mat */
36058d2139bdSHong Zhang           idx[count]     = j;
3606366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36074a3daf6eSHong Zhang         } else if (Bn) {
3608a31a438cSHong Zhang           /* off-diagonal part of mat */
3609a31a438cSHong Zhang           if (j == garray[k]) {
36108d2139bdSHong Zhang             idx[count]     = j;
3611a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3612a31a438cSHong Zhang           } else if (j > garray[k]) {
3613a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3614a31a438cSHong Zhang             if (j == garray[k]) {
3615a31a438cSHong Zhang               idx[count]     = j;
3616a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36178d2139bdSHong Zhang             }
36188d2139bdSHong Zhang           }
36198d2139bdSHong Zhang         }
36208d2139bdSHong Zhang       }
36219566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36228d2139bdSHong Zhang 
36239566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36249566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36259566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3626b6d9b4e0SHong Zhang 
36279566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3628a31a438cSHong Zhang     }
36298b3fa1f7SHong Zhang 
36303b00a383SHong Zhang     /* (3) Create sequential Msub */
36319566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3632d5761cdaSHong Zhang   }
36338d2139bdSHong Zhang 
36349566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
363557508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Msub->data;
363698b658c4SHong Zhang   ii  = aij->i;
36379566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3638a0ff6018SBarry Smith 
3639a0ff6018SBarry Smith   /*
3640a0ff6018SBarry Smith       m - number of local rows
3641a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3642a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3643a0ff6018SBarry Smith   */
36449566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
364598b658c4SHong Zhang 
36463b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36473b00a383SHong Zhang     /* (4) Create parallel newmat */
364898b658c4SHong Zhang     PetscMPIInt rank, size;
3649bcae8d28SHong Zhang     PetscInt    csize;
365098b658c4SHong Zhang 
36519566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36529566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
365300e6dbe6SBarry Smith 
3654a0ff6018SBarry Smith     /*
365500e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
365600e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3657a0ff6018SBarry Smith     */
365800e6dbe6SBarry Smith 
365900e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36609566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36616a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36629566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3663a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3664e2c4fddaSBarry Smith         nlocal = m;
36656a6a5d1dSBarry Smith       } else {
3666a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3667ab50ec6bSBarry Smith       }
3668ab50ec6bSBarry Smith     } else {
36696a6a5d1dSBarry Smith       nlocal = csize;
36706a6a5d1dSBarry Smith     }
36719566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
367200e6dbe6SBarry Smith     rstart = rend - nlocal;
3673aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
367400e6dbe6SBarry Smith 
367500e6dbe6SBarry Smith     /* next, compute all the lengths */
367698b658c4SHong Zhang     jj = aij->j;
36779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
367800e6dbe6SBarry Smith     olens = dlens + m;
367900e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
368000e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
368100e6dbe6SBarry Smith       olen = 0;
368200e6dbe6SBarry Smith       dlen = 0;
368300e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
368415b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
368500e6dbe6SBarry Smith         else dlen++;
368600e6dbe6SBarry Smith         jj++;
368700e6dbe6SBarry Smith       }
368800e6dbe6SBarry Smith       olens[i] = olen;
368900e6dbe6SBarry Smith       dlens[i] = dlen;
369000e6dbe6SBarry Smith     }
3691b6d9b4e0SHong Zhang 
36929566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36939566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
369498b658c4SHong Zhang 
36959566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36969566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36979566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
36989566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
36999566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
37009566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3701d5761cdaSHong Zhang 
3702d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3703a0ff6018SBarry Smith     M = *newmat;
37049566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
370508401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37069566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3707c48de900SBarry Smith     /*
3708c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3709c48de900SBarry Smith        rather than the slower MatSetValues().
3710c48de900SBarry Smith     */
3711c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3712c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3713a0ff6018SBarry Smith   }
3714548ecf4dSHong Zhang 
37153b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37179566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
371898b658c4SHong Zhang 
371998b658c4SHong Zhang   jj = aij->j;
37209566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3721a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3722a0ff6018SBarry Smith     row = rstart + i;
372300e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
372415b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37259566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37269371c9d4SSatish Balay     jj += nz;
37279371c9d4SSatish Balay     aa += nz;
3728a0ff6018SBarry Smith   }
37299566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37309566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3731a0ff6018SBarry Smith 
37329566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3734fee21e36SBarry Smith 
37359566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
373698b658c4SHong Zhang 
373798b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3738fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37393b00a383SHong Zhang     *newmat = M;
3740f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37419566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
374298b658c4SHong Zhang 
3743f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37449566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
374598b658c4SHong Zhang 
3746f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37479566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3748bcae8d28SHong Zhang 
3749bcae8d28SHong Zhang     if (iscol_local) {
3750f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37519566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3752bcae8d28SHong Zhang     }
375398b658c4SHong Zhang   }
37543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3755a0ff6018SBarry Smith }
3756273d9f13SBarry Smith 
3757df40acb1SHong Zhang /*
3758df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3759df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3760df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3761df40acb1SHong Zhang 
376211a5261eSBarry Smith   This requires a sequential iscol with all indices.
3763df40acb1SHong Zhang */
3764d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3765d71ae5a4SJacob Faibussowitsch {
3766df40acb1SHong Zhang   PetscMPIInt rank, size;
3767df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3768df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3769df40acb1SHong Zhang   Mat         M, Mreuse;
377098b658c4SHong Zhang   MatScalar  *aa, *vwork;
3771df40acb1SHong Zhang   MPI_Comm    comm;
3772df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37730b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3774df40acb1SHong Zhang 
3775df40acb1SHong Zhang   PetscFunctionBegin;
37769566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37779566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37789566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3779df40acb1SHong Zhang 
37800b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37819566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37829566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37830b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
3784462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37850b27a90eSHong Zhang 
3786df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37879566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
378828b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37899566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3790df40acb1SHong Zhang   } else {
37919566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3792df40acb1SHong Zhang   }
3793df40acb1SHong Zhang 
3794df40acb1SHong Zhang   /*
3795df40acb1SHong Zhang       m - number of local rows
3796df40acb1SHong Zhang       n - number of columns (same on all processors)
3797df40acb1SHong Zhang       rstart - first row in new global matrix generated
3798df40acb1SHong Zhang   */
37999566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
38009566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3801df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
380257508eceSPierre Jolivet     aij = (Mat_SeqAIJ *)Mreuse->data;
3803df40acb1SHong Zhang     ii  = aij->i;
3804df40acb1SHong Zhang     jj  = aij->j;
3805df40acb1SHong Zhang 
3806df40acb1SHong Zhang     /*
3807df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3808df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3809df40acb1SHong Zhang     */
3810df40acb1SHong Zhang 
3811df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3812df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38139566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3814df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3815df40acb1SHong Zhang         nlocal = m;
3816df40acb1SHong Zhang       } else {
3817df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3818df40acb1SHong Zhang       }
3819df40acb1SHong Zhang     } else {
3820df40acb1SHong Zhang       nlocal = csize;
3821df40acb1SHong Zhang     }
38229566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3823df40acb1SHong Zhang     rstart = rend - nlocal;
3824aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3825df40acb1SHong Zhang 
3826df40acb1SHong Zhang     /* next, compute all the lengths */
38279566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3828df40acb1SHong Zhang     olens = dlens + m;
3829df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3830df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3831df40acb1SHong Zhang       olen = 0;
3832df40acb1SHong Zhang       dlen = 0;
3833df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3834df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3835df40acb1SHong Zhang         else dlen++;
3836df40acb1SHong Zhang         jj++;
3837df40acb1SHong Zhang       }
3838df40acb1SHong Zhang       olens[i] = olen;
3839df40acb1SHong Zhang       dlens[i] = dlen;
3840df40acb1SHong Zhang     }
38419566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38429566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38439566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38449566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38459566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38469566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3847df40acb1SHong Zhang   } else {
3848df40acb1SHong Zhang     PetscInt ml, nl;
3849df40acb1SHong Zhang 
3850df40acb1SHong Zhang     M = *newmat;
38519566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
385208401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38539566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3854df40acb1SHong Zhang     /*
3855df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3856df40acb1SHong Zhang        rather than the slower MatSetValues().
3857df40acb1SHong Zhang     */
3858df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3859df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3860df40acb1SHong Zhang   }
38619566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
386257508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Mreuse->data;
3863df40acb1SHong Zhang   ii  = aij->i;
3864df40acb1SHong Zhang   jj  = aij->j;
38652e5835c6SStefano Zampini 
38662e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3868df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3869df40acb1SHong Zhang     row   = rstart + i;
3870df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38719371c9d4SSatish Balay     cwork = jj;
38728e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38739371c9d4SSatish Balay     vwork = aa;
38748e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38759566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3876df40acb1SHong Zhang   }
38779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3878df40acb1SHong Zhang 
38799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3881df40acb1SHong Zhang   *newmat = M;
3882df40acb1SHong Zhang 
3883df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3884df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38859566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38869566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3887df40acb1SHong Zhang   }
38883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3889df40acb1SHong Zhang }
3890df40acb1SHong Zhang 
3891ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3892d71ae5a4SJacob Faibussowitsch {
38936a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
38949f0612e4SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart;
3895ccd8e176SBarry Smith   const PetscInt *JJ;
3896eeb24464SBarry Smith   PetscBool       nooffprocentries;
38976a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3898ccd8e176SBarry Smith 
3899ccd8e176SBarry Smith   PetscFunctionBegin;
39009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
39019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3902d0f46423SBarry Smith   m       = B->rmap->n;
3903d0f46423SBarry Smith   cstart  = B->cmap->rstart;
3904d0f46423SBarry Smith   cend    = B->cmap->rend;
3905d0f46423SBarry Smith   rstart  = B->rmap->rstart;
39069f0612e4SBarry Smith   irstart = Ii[0];
3907899cda47SBarry Smith 
39089566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3909ccd8e176SBarry Smith 
391076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39118f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3912ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39139f0612e4SBarry Smith       JJ  = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
391408401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
391508401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
391608401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3917ecc77c7aSBarry Smith     }
391876bd3646SJed Brown   }
3919ecc77c7aSBarry Smith 
39208f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3921b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39229f0612e4SBarry Smith     JJ      = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
3923ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3924ccd8e176SBarry Smith     d       = 0;
39250daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39260daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3927ccd8e176SBarry Smith     }
3928ccd8e176SBarry Smith     d_nnz[i] = d;
3929ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3930ccd8e176SBarry Smith   }
39319566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39329566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3933ccd8e176SBarry Smith 
39348f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3935ccd8e176SBarry Smith     ii = i + rstart;
39369f0612e4SBarry Smith     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES));
3937ccd8e176SBarry Smith   }
3938eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3939eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39419566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3942eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3943ccd8e176SBarry Smith 
39446a3d2595SBarry Smith   /* count number of entries below block diagonal */
39456a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39466a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39476a3d2595SBarry Smith   Aij->ld = ld;
39486a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39496a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39506a3d2595SBarry Smith     j   = 0;
3951ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39526a3d2595SBarry Smith     ld[i] = j;
3953720a2405SPierre Jolivet     if (J) J += nnz;
39546a3d2595SBarry Smith   }
39556a3d2595SBarry Smith 
39569566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3958ccd8e176SBarry Smith }
3959ccd8e176SBarry Smith 
39601eea217eSSatish Balay /*@
396111a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3962ccd8e176SBarry Smith   (the default parallel PETSc format).
3963ccd8e176SBarry Smith 
3964d083f849SBarry Smith   Collective
3965ccd8e176SBarry Smith 
3966ccd8e176SBarry Smith   Input Parameters:
3967a1661176SMatthew Knepley + B - the matrix
3968d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3969d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3970ccd8e176SBarry Smith - v - optional values in the matrix
3971ccd8e176SBarry Smith 
3972ccd8e176SBarry Smith   Level: developer
3973ccd8e176SBarry Smith 
397412251496SSatish Balay   Notes:
39752ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39762ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
397711a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
397812251496SSatish Balay 
39792ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
398012251496SSatish Balay 
3981a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3982a4bd8bc0SBarry Smith 
3983a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3984a4bd8bc0SBarry Smith 
3985a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3986a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3987a4bd8bc0SBarry Smith 
398812251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
398912251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3990c5e4d11fSDmitry Karpeev   as shown
399127430b45SBarry Smith .vb
399227430b45SBarry Smith         1 0 0
399327430b45SBarry Smith         2 0 3     P0
399427430b45SBarry Smith        -------
399527430b45SBarry Smith         4 5 6     P1
399627430b45SBarry Smith 
399727430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
399827430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
399927430b45SBarry Smith         j =  {0,0,2}  [size = 3]
400027430b45SBarry Smith         v =  {1,2,3}  [size = 3]
400127430b45SBarry Smith 
400227430b45SBarry Smith      Process1 [P1] rows_owned=[2]
400327430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
400427430b45SBarry Smith         j =  {0,1,2}  [size = 3]
400527430b45SBarry Smith         v =  {4,5,6}  [size = 3]
400627430b45SBarry Smith .ve
400712251496SSatish Balay 
4008fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4009a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4010ccd8e176SBarry Smith @*/
4011d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4012d71ae5a4SJacob Faibussowitsch {
4013ccd8e176SBarry Smith   PetscFunctionBegin;
4014cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4016ccd8e176SBarry Smith }
4017ccd8e176SBarry Smith 
40185d83a8b1SBarry Smith /*@
401911a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4020273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4021273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
402220f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4023273d9f13SBarry Smith 
4024d083f849SBarry Smith   Collective
4025273d9f13SBarry Smith 
4026273d9f13SBarry Smith   Input Parameters:
40271c4f3114SJed Brown + B     - the matrix
4028273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4029273d9f13SBarry Smith            (same value is used for all local rows)
4030273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4031273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40322ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4033273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40343287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40353287b5eaSJed Brown            the diagonal entry even if it is zero.
4036273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4037273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4038273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4039273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40402ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4041273d9f13SBarry Smith            structure. The size of this array is equal to the number
4042273d9f13SBarry Smith            of local rows, i.e 'm'.
4043273d9f13SBarry Smith 
40442920cce0SJacob Faibussowitsch   Example Usage:
404527430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
404627430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
404727430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
404827430b45SBarry Smith   as follows
404927430b45SBarry Smith 
405027430b45SBarry Smith .vb
405127430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
405227430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
405327430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
405427430b45SBarry Smith     -------------------------------------
405527430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
405627430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
405727430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
405827430b45SBarry Smith     -------------------------------------
405927430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
406027430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
406127430b45SBarry Smith .ve
406227430b45SBarry Smith 
406327430b45SBarry Smith   This can be represented as a collection of submatrices as
406427430b45SBarry Smith .vb
406527430b45SBarry Smith       A B C
406627430b45SBarry Smith       D E F
406727430b45SBarry Smith       G H I
406827430b45SBarry Smith .ve
406927430b45SBarry Smith 
407027430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
407127430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
407227430b45SBarry Smith 
407327430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407427430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407527430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
407627430b45SBarry Smith 
407727430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
407827430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
407927430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
408027430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
408127430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
408227430b45SBarry Smith   matrix, ans [DF] as another `MATSEQAIJ` matrix.
408327430b45SBarry Smith 
408420f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
408520f4b53cSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
408627430b45SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
408720f4b53cSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
408827430b45SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
408920f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
409027430b45SBarry Smith .vb
409127430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
409227430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
409327430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
409427430b45SBarry Smith .ve
409520f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
409627430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
409727430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
409827430b45SBarry Smith   34 values.
409927430b45SBarry Smith 
410020f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
410127430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
410220f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
410327430b45SBarry Smith .vb
410427430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
410527430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
410627430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
410727430b45SBarry Smith .ve
410827430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
410927430b45SBarry Smith   hence pre-allocation is perfect.
411027430b45SBarry Smith 
411127430b45SBarry Smith   Level: intermediate
411227430b45SBarry Smith 
411327430b45SBarry Smith   Notes:
411449a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
411549a6f317SBarry Smith 
411627430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41170598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4118651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4119273d9f13SBarry Smith 
4120273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4121273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4122273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4123273d9f13SBarry Smith 
4124273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4125a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4126a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4127a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4128a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4129a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4130a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4131a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4132a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4133273d9f13SBarry Smith 
41342ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4135273d9f13SBarry Smith 
413627430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4137aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
413827430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4139aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4140aa95bbe8SBarry Smith 
41411cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4142a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4143273d9f13SBarry Smith @*/
4144d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4145d71ae5a4SJacob Faibussowitsch {
4146273d9f13SBarry Smith   PetscFunctionBegin;
41476ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41486ba663aaSJed Brown   PetscValidType(B, 1);
4149cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4151273d9f13SBarry Smith }
4152273d9f13SBarry Smith 
415358d36128SBarry Smith /*@
415411a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41558f8f2f0dSBarry Smith   CSR format for the local rows.
41562fb0ec9aSBarry Smith 
4157d083f849SBarry Smith   Collective
41582fb0ec9aSBarry Smith 
41592fb0ec9aSBarry Smith   Input Parameters:
41602fb0ec9aSBarry Smith + comm - MPI communicator
416111a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41622fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4163d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4164d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4165d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4166d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41675693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41685693b835SJunchao Zhang . j    - global column indices
4169f1f2ae84SBarry Smith - a    - optional matrix values
41702fb0ec9aSBarry Smith 
41712fb0ec9aSBarry Smith   Output Parameter:
41722fb0ec9aSBarry Smith . mat - the matrix
417303bfb495SBarry Smith 
41742fb0ec9aSBarry Smith   Level: intermediate
41752fb0ec9aSBarry Smith 
41762fb0ec9aSBarry Smith   Notes:
41772ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4178d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4179d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41802fb0ec9aSBarry Smith 
41812ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
418212251496SSatish Balay 
41835693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4184a4bd8bc0SBarry Smith 
41855693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4186a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4187a4bd8bc0SBarry Smith 
418812251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4189d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4190c5e4d11fSDmitry Karpeev   as shown
41912ef1f0ffSBarry Smith .vb
41922ef1f0ffSBarry Smith         1 0 0
41932ef1f0ffSBarry Smith         2 0 3     P0
41942ef1f0ffSBarry Smith        -------
41952ef1f0ffSBarry Smith         4 5 6     P1
41968f8f2f0dSBarry Smith 
41972ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
41982ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
41992ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
42002ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
42012fb0ec9aSBarry Smith 
42022ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
42032ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
42042ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
42052ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42062ef1f0ffSBarry Smith .ve
42072ef1f0ffSBarry Smith 
4208d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42095693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42102fb0ec9aSBarry Smith @*/
4211d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4212d71ae5a4SJacob Faibussowitsch {
42132fb0ec9aSBarry Smith   PetscFunctionBegin;
421408401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
421508401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42169566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42179566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42189566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42199566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42209566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42222fb0ec9aSBarry Smith }
42232fb0ec9aSBarry Smith 
42248f8f2f0dSBarry Smith /*@
422511a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42262ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42272ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42286a3d2595SBarry Smith 
42296a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42308f8f2f0dSBarry Smith 
42318f8f2f0dSBarry Smith   Collective
42328f8f2f0dSBarry Smith 
42338f8f2f0dSBarry Smith   Input Parameters:
42348f8f2f0dSBarry Smith + mat - the matrix
423511a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42368f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
423711a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42388f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
423911a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
424011a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42418f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42428f8f2f0dSBarry Smith . J   - column indices
42438f8f2f0dSBarry Smith - v   - matrix values
42448f8f2f0dSBarry Smith 
42452ef1f0ffSBarry Smith   Level: deprecated
42468f8f2f0dSBarry Smith 
42471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4248a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42498f8f2f0dSBarry Smith @*/
4250d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4251d71ae5a4SJacob Faibussowitsch {
42526a3d2595SBarry Smith   PetscInt        nnz, i;
42538f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42548f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4255fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4256fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42578f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42586a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42596a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42608f8f2f0dSBarry Smith 
42618f8f2f0dSBarry Smith   PetscFunctionBegin;
4262aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
426308401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
426408401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
426508401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42668f8f2f0dSBarry Smith 
42679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42698f8f2f0dSBarry Smith 
42708f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42714c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42724c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42734c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42744c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42754c17f1ccSBarry Smith       }
42764c17f1ccSBarry Smith     }
42778f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42788f8f2f0dSBarry Smith     Iii = Ii[i];
42798f8f2f0dSBarry Smith     ldi = ld[i];
42808f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42819566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42829566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42839566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42848f8f2f0dSBarry Smith     ad += md;
42858f8f2f0dSBarry Smith     ao += nnz - md;
42868f8f2f0dSBarry Smith   }
42878f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42888f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42899566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42909566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42919566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42929566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42939566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42968f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42988f8f2f0dSBarry Smith }
42998f8f2f0dSBarry Smith 
43006a3d2595SBarry Smith /*@
430111a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
43026a3d2595SBarry Smith 
43036a3d2595SBarry Smith   Collective
43046a3d2595SBarry Smith 
43056a3d2595SBarry Smith   Input Parameters:
43066a3d2595SBarry Smith + mat - the matrix
43076a3d2595SBarry Smith - v   - matrix values, stored by row
43086a3d2595SBarry Smith 
43096a3d2595SBarry Smith   Level: intermediate
43106a3d2595SBarry Smith 
4311a4bd8bc0SBarry Smith   Notes:
43126a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43136a3d2595SBarry Smith 
4314a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4315a4bd8bc0SBarry Smith 
43161cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4317a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43186a3d2595SBarry Smith @*/
4319d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4320d71ae5a4SJacob Faibussowitsch {
43216a3d2595SBarry Smith   PetscInt        nnz, i, m;
43226a3d2595SBarry Smith   PetscBool       nooffprocentries;
43236a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43246a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43256a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43266a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43276a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43286a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43296a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43306a3d2595SBarry Smith 
43316a3d2595SBarry Smith   PetscFunctionBegin;
43326a3d2595SBarry Smith   m = mat->rmap->n;
43336a3d2595SBarry Smith 
43346a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43356a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43366a3d2595SBarry Smith   Iii = 0;
43376a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43386a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43396a3d2595SBarry Smith     ldi = ld[i];
43406a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43416a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43426a3d2595SBarry Smith     ad += md;
4343810441c8SPierre Jolivet     if (ao) {
4344810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4345810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43466a3d2595SBarry Smith       ao += nnz - md;
4347810441c8SPierre Jolivet     }
43486a3d2595SBarry Smith     Iii += nnz;
43496a3d2595SBarry Smith   }
43506a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43516a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43526a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43536a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43546a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43556a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43566a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43576a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43586a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43596a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43616a3d2595SBarry Smith }
43626a3d2595SBarry Smith 
43635d83a8b1SBarry Smith /*@
436411a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4365273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4366273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43672ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4368273d9f13SBarry Smith 
4369d083f849SBarry Smith   Collective
4370273d9f13SBarry Smith 
4371273d9f13SBarry Smith   Input Parameters:
4372273d9f13SBarry Smith + comm  - MPI communicator
437311a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4374273d9f13SBarry Smith           This value should be the same as the local size used in creating the
4375273d9f13SBarry Smith           y vector for the matrix-vector product y = Ax.
4376273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
437745f401ebSJose E. Roman           x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4378273d9f13SBarry Smith           calculated if N is given) For square matrices n is almost always m.
437911a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
438011a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4381273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4382273d9f13SBarry Smith           (same value is used for all local rows)
4383273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4384273d9f13SBarry Smith           DIAGONAL portion of the local submatrix (possibly different for each row)
43852ef1f0ffSBarry Smith           or `NULL`, if `d_nz` is used to specify the nonzero structure.
4386273d9f13SBarry Smith           The size of this array is equal to the number of local rows, i.e 'm'.
4387273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4388273d9f13SBarry Smith           submatrix (same value is used for all local rows).
4389273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4390273d9f13SBarry Smith           OFF-DIAGONAL portion of the local submatrix (possibly different for
43912ef1f0ffSBarry Smith           each row) or `NULL`, if `o_nz` is used to specify the nonzero
4392273d9f13SBarry Smith           structure. The size of this array is equal to the number
4393273d9f13SBarry Smith           of local rows, i.e 'm'.
4394273d9f13SBarry Smith 
4395273d9f13SBarry Smith   Output Parameter:
4396273d9f13SBarry Smith . A - the matrix
4397273d9f13SBarry Smith 
439827430b45SBarry Smith   Options Database Keys:
439927430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
440027430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
440127430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
4402727bdf9bSBarry Smith                                       See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter`
4403727bdf9bSBarry Smith                                       to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
440427430b45SBarry Smith 
44052ef1f0ffSBarry Smith   Level: intermediate
44062ef1f0ffSBarry Smith 
440727430b45SBarry Smith   Notes:
440877433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4409f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
441011a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4411175b88e8SBarry Smith 
441249a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
441349a6f317SBarry Smith 
44142ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44152ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4416273d9f13SBarry Smith   storage requirements for this matrix.
4417273d9f13SBarry Smith 
441811a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4419273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4420273d9f13SBarry Smith   that argument.
4421273d9f13SBarry Smith 
4422727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
4423727bdf9bSBarry Smith   `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
4424727bdf9bSBarry Smith 
4425273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4426273d9f13SBarry Smith   (possibly both).
4427273d9f13SBarry Smith 
442833a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
4429727bdf9bSBarry Smith   first `m0` rows belong to process 0, the next `m1` rows belong to
4430727bdf9bSBarry Smith   process 1, the next `m2` rows belong to process 2, etc., where
4431727bdf9bSBarry Smith   `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores
443233a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4433273d9f13SBarry Smith 
443433a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
443533a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4436df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
443733a7c187SSatish Balay 
443833a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
443933a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
444033a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
444133a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
444233a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
444333a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
444433a7c187SSatish Balay   illustrates this concept.
444533a7c187SSatish Balay 
444633a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
444733a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
444833a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
444933a7c187SSatish Balay   local matrix (a rectangular submatrix).
4450273d9f13SBarry Smith 
44512ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4452273d9f13SBarry Smith 
445397d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44542ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4455da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4456da57b5cdSKarl Rupp .vb
44572ef1f0ffSBarry Smith   MatCreate(..., &A);
44582ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44592ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44602ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4461da57b5cdSKarl Rupp .ve
446297d05335SKris Buschelman 
4463273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4464273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4465273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4466273d9f13SBarry Smith 
44672920cce0SJacob Faibussowitsch   Example Usage:
4468273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4469273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4470273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4471efc377ccSKarl Rupp   as follows
4472273d9f13SBarry Smith 
4473273d9f13SBarry Smith .vb
4474273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4475273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4476273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4477273d9f13SBarry Smith     -------------------------------------
4478273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4479273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4480273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4481273d9f13SBarry Smith     -------------------------------------
4482273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4483273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4484273d9f13SBarry Smith .ve
4485273d9f13SBarry Smith 
4486da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4487273d9f13SBarry Smith 
4488273d9f13SBarry Smith .vb
4489273d9f13SBarry Smith       A B C
4490273d9f13SBarry Smith       D E F
4491273d9f13SBarry Smith       G H I
4492273d9f13SBarry Smith .ve
4493273d9f13SBarry Smith 
4494273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4495273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4496273d9f13SBarry Smith 
4497273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4498273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4499273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4500273d9f13SBarry Smith 
4501273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4502273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4503273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4504273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
450527430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
4506273d9f13SBarry Smith   matrix, ans [DF] as another SeqAIJ matrix.
4507273d9f13SBarry Smith 
45082ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45092ef1f0ffSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
4510273d9f13SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
45112ef1f0ffSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
4512273d9f13SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45132ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4514273d9f13SBarry Smith .vb
451527430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
451627430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
451727430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4518273d9f13SBarry Smith .ve
45192ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4520273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4521273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4522273d9f13SBarry Smith   34 values.
4523273d9f13SBarry Smith 
45242ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4525a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4526da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4527273d9f13SBarry Smith .vb
452827430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
452927430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
453027430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4531273d9f13SBarry Smith .ve
4532273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4533273d9f13SBarry Smith   hence pre-allocation is perfect.
4534273d9f13SBarry Smith 
45351cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4536727bdf9bSBarry Smith           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`,
4537727bdf9bSBarry Smith           `MatGetOwnershipRangesColumn()`, `PetscLayout`
4538273d9f13SBarry Smith @*/
4539d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4540d71ae5a4SJacob Faibussowitsch {
4541b1d57f15SBarry Smith   PetscMPIInt size;
4542273d9f13SBarry Smith 
4543273d9f13SBarry Smith   PetscFunctionBegin;
45449566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45459566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45469566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4547273d9f13SBarry Smith   if (size > 1) {
45489566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45499566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4550273d9f13SBarry Smith   } else {
45519566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45529566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4553273d9f13SBarry Smith   }
45543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4555273d9f13SBarry Smith }
4556195d93cdSBarry Smith 
45570b98dbb4SBarry Smith /*MC
45580b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix
45590b98dbb4SBarry Smith 
45600b98dbb4SBarry Smith     Synopsis:
45610b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45620b98dbb4SBarry Smith 
45630b98dbb4SBarry Smith     Not Collective
45640b98dbb4SBarry Smith 
45650b98dbb4SBarry Smith     Input Parameter:
45660b98dbb4SBarry Smith .   A - the `MATMPIAIJ` matrix
45670b98dbb4SBarry Smith 
45680b98dbb4SBarry Smith     Output Parameters:
45690b98dbb4SBarry Smith +   Ad - the diagonal portion of the matrix
45704cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45712ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45720b98dbb4SBarry Smith -   ierr - error code
45730b98dbb4SBarry Smith 
45740b98dbb4SBarry Smith      Level: advanced
45750b98dbb4SBarry Smith 
45760b98dbb4SBarry Smith     Note:
45770b98dbb4SBarry Smith     Use  `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45780b98dbb4SBarry Smith 
45791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()`
45800b98dbb4SBarry Smith M*/
45810b98dbb4SBarry Smith 
45820b98dbb4SBarry Smith /*MC
45830b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45840b98dbb4SBarry Smith 
45850b98dbb4SBarry Smith     Synopsis:
45860b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45870b98dbb4SBarry Smith 
45880b98dbb4SBarry Smith     Not Collective
45890b98dbb4SBarry Smith 
45900b98dbb4SBarry Smith     Input Parameters:
45910b98dbb4SBarry Smith +   A - the `MATMPIAIJ` matrix
45920b98dbb4SBarry Smith .   Ad - the diagonal portion of the matrix
45934cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45942ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45950b98dbb4SBarry Smith -   ierr - error code
45960b98dbb4SBarry Smith 
45970b98dbb4SBarry Smith      Level: advanced
45980b98dbb4SBarry Smith 
45991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()`
46000b98dbb4SBarry Smith M*/
46010b98dbb4SBarry Smith 
4602127ca0efSMatthew Knepley /*@C
46030ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4604127ca0efSMatthew Knepley 
46052ef1f0ffSBarry Smith   Not Collective
4606127ca0efSMatthew Knepley 
4607127ca0efSMatthew Knepley   Input Parameter:
460811a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4609127ca0efSMatthew Knepley 
4610127ca0efSMatthew Knepley   Output Parameters:
461111a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
461211a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
46132ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4614127ca0efSMatthew Knepley 
46150ab4885dSBarry Smith   Level: intermediate
46160ab4885dSBarry Smith 
461711a5261eSBarry Smith   Note:
46182ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
46192ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
46202ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4621127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4622127ca0efSMatthew Knepley 
4623fe59aa6dSJacob Faibussowitsch   Fortran Notes:
46240ab4885dSBarry Smith   `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()`
4625127ca0efSMatthew Knepley 
4626fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4627127ca0efSMatthew Knepley @*/
4628d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4629d71ae5a4SJacob Faibussowitsch {
4630195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
463104cf37c7SBarry Smith   PetscBool   flg;
4632b1d57f15SBarry Smith 
4633195d93cdSBarry Smith   PetscFunctionBegin;
46349566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
463528b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
463621e72a00SBarry Smith   if (Ad) *Ad = a->A;
463721e72a00SBarry Smith   if (Ao) *Ao = a->B;
463821e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4640195d93cdSBarry Smith }
4641a2243be0SBarry Smith 
4642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4643d71ae5a4SJacob Faibussowitsch {
4644110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46459b8102ccSHong Zhang   PetscInt    *indx;
4646110bb6e1SHong Zhang   PetscScalar *values;
4647421ddf4dSJunchao Zhang   MatType      rootType;
46489b8102ccSHong Zhang 
46499b8102ccSHong Zhang   PetscFunctionBegin;
46509566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4651110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4652110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4653110bb6e1SHong Zhang 
465448a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4655a22543b6SHong Zhang     /* Check sum(n) = N */
4656462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
465708401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4658a22543b6SHong Zhang 
46599566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46609b8102ccSHong Zhang     rstart -= m;
46619b8102ccSHong Zhang 
4662d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46639b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46649566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46659566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46669566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46679b8102ccSHong Zhang     }
46689b8102ccSHong Zhang 
46699566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46709566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46719566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46729566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46739566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46749566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46759566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46769566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4677d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46789566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46799b8102ccSHong Zhang   }
46809b8102ccSHong Zhang 
4681110bb6e1SHong Zhang   /* numeric phase */
46829566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46839b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46849566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46859b8102ccSHong Zhang     Ii = i + rstart;
46869566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46879566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46889b8102ccSHong Zhang   }
46899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4692c5d6d63eSBarry Smith }
4693c5d6d63eSBarry Smith 
4694*49abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data)
4695d71ae5a4SJacob Faibussowitsch {
4696*49abdd8aSBarry Smith   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data;
469751a7d1a8SHong Zhang 
469851a7d1a8SHong Zhang   PetscFunctionBegin;
46993ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
47009566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
47019566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
47029566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
47039566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
47049566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
47059566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
47069566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
47079566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
47089566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
47099566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
47109566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
47119566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
47129566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
47139566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
47143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
471551a7d1a8SHong Zhang }
471651a7d1a8SHong Zhang 
4717c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4718c6db04a5SJed Brown #include <petscbt.h>
47194ebed01fSBarry Smith 
4720d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4721d71ae5a4SJacob Faibussowitsch {
4722ce94432eSBarry Smith   MPI_Comm             comm;
472355d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4724b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
47256497c311SBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m;
47266497c311SBarry Smith   PetscMPIInt          proc, k;
4727b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
47286497c311SBarry Smith   PetscInt             anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4729b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
473055d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
473155d1abb9SHong Zhang   MPI_Status          *status;
4732fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4733dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
473455d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4735776b82aeSLisandro Dalcin   PetscContainer       container;
473655d1abb9SHong Zhang 
473755d1abb9SHong Zhang   PetscFunctionBegin;
47389566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47399566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47403c2c1871SHong Zhang 
47419566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47429566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
474355d1abb9SHong Zhang 
47449566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
474528b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47469566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47479566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4748fff043a9SJunchao Zhang   aa = a_a;
4749bf0cc555SLisandro Dalcin 
475055d1abb9SHong Zhang   bi     = merge->bi;
475155d1abb9SHong Zhang   bj     = merge->bj;
475255d1abb9SHong Zhang   buf_ri = merge->buf_ri;
475355d1abb9SHong Zhang   buf_rj = merge->buf_rj;
475455d1abb9SHong Zhang 
47559566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47567a2fc3feSBarry Smith   owners = merge->rowmap->range;
475755d1abb9SHong Zhang   len_s  = merge->len_s;
475855d1abb9SHong Zhang 
475955d1abb9SHong Zhang   /* send and recv matrix values */
47609566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47619566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
476255d1abb9SHong Zhang 
47639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
476455d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
476555d1abb9SHong Zhang     if (!len_s[proc]) continue;
476655d1abb9SHong Zhang     i = owners[proc];
47676497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
476855d1abb9SHong Zhang     k++;
476955d1abb9SHong Zhang   }
477055d1abb9SHong Zhang 
47719566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47729566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47739566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
477455d1abb9SHong Zhang 
47759566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47769566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
477755d1abb9SHong Zhang 
477855d1abb9SHong Zhang   /* insert mat values of mpimat */
47799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
478155d1abb9SHong Zhang 
478255d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
478355d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4784f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
478555d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4786a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
478755d1abb9SHong Zhang   }
478855d1abb9SHong Zhang 
478955d1abb9SHong Zhang   /* set values of ba */
47907a2fc3feSBarry Smith   m = merge->rowmap->n;
479155d1abb9SHong Zhang   for (i = 0; i < m; i++) {
479255d1abb9SHong Zhang     arow = owners[rank] + i;
479355d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
479455d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47959566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
479655d1abb9SHong Zhang 
479755d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
479855d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
479955d1abb9SHong Zhang     aj     = a->j + ai[arow];
4800fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
480155d1abb9SHong Zhang     nextaj = 0;
480255d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
480355d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
480455d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
480555d1abb9SHong Zhang       }
480655d1abb9SHong Zhang     }
480755d1abb9SHong Zhang 
480855d1abb9SHong Zhang     /* add received vals into ba */
480955d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
481055d1abb9SHong Zhang       /* i-th row */
481155d1abb9SHong Zhang       if (i == *nextrow[k]) {
481255d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4813f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4814f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
481555d1abb9SHong Zhang         nextaj = 0;
481655d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
481755d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
481855d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
481955d1abb9SHong Zhang           }
482055d1abb9SHong Zhang         }
48219371c9d4SSatish Balay         nextrow[k]++;
48229371c9d4SSatish Balay         nextai[k]++;
482355d1abb9SHong Zhang       }
482455d1abb9SHong Zhang     }
48259566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
482655d1abb9SHong Zhang   }
48279566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
48289566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
48299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
483055d1abb9SHong Zhang 
48319566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
48329566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
48339566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
48349566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
48359566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
48363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
483755d1abb9SHong Zhang }
483838f152feSBarry Smith 
4839d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4840d71ae5a4SJacob Faibussowitsch {
484155a3bba9SHong Zhang   Mat                  B_mpi;
4842c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4843b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4844b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4845d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
48466497c311SBarry Smith   PetscInt             len, *dnz, *onz, bs, cbs;
4847c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4848b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
484955d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
485058cb9c82SHong Zhang   MPI_Status          *status;
48510298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4852be0fcf8dSHong Zhang   PetscBT              lnkbt;
485351a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4854776b82aeSLisandro Dalcin   PetscContainer       container;
485502c68681SHong Zhang 
4856e5f2cdd8SHong Zhang   PetscFunctionBegin;
48579566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48583c2c1871SHong Zhang 
485938f152feSBarry Smith   /* make sure it is a PETSc comm */
48609566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48619566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
486355d1abb9SHong Zhang 
48649566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4866e5f2cdd8SHong Zhang 
48676abd8857SHong Zhang   /* determine row ownership */
48689566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48709566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48719566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
487555d1abb9SHong Zhang 
48767a2fc3feSBarry Smith   m      = merge->rowmap->n;
48777a2fc3feSBarry Smith   owners = merge->rowmap->range;
48786abd8857SHong Zhang 
48796abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48803e06a4e6SHong Zhang   len_s = merge->len_s;
488151a7d1a8SHong Zhang 
48822257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4883c2234fe3SHong Zhang   merge->nsend = 0;
48846497c311SBarry Smith   for (PetscMPIInt proc = 0; proc < size; proc++) {
48852257cef7SHong Zhang     len_si[proc] = 0;
48863e06a4e6SHong Zhang     if (proc == rank) {
48876abd8857SHong Zhang       len_s[proc] = 0;
48883e06a4e6SHong Zhang     } else {
48896497c311SBarry Smith       PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc]));
48906497c311SBarry Smith       PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */
48913e06a4e6SHong Zhang     }
48923e06a4e6SHong Zhang     if (len_s[proc]) {
4893c2234fe3SHong Zhang       merge->nsend++;
48942257cef7SHong Zhang       nrows = 0;
48952257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48962257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48972257cef7SHong Zhang       }
48986497c311SBarry Smith       PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc]));
48992257cef7SHong Zhang       len += len_si[proc];
4900409913e3SHong Zhang     }
490158cb9c82SHong Zhang   }
4902409913e3SHong Zhang 
49032257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
49049566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
49059566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4906671beff6SHong Zhang 
49073e06a4e6SHong Zhang   /* post the Irecv of j-structure */
49089566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
49099566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
491002c68681SHong Zhang 
49113e06a4e6SHong Zhang   /* post the Isend of j-structure */
49129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
49133e06a4e6SHong Zhang 
49146497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
4915409913e3SHong Zhang     if (!len_s[proc]) continue;
491602c68681SHong Zhang     i = owners[proc];
49176497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
491851a7d1a8SHong Zhang     k++;
491951a7d1a8SHong Zhang   }
492051a7d1a8SHong Zhang 
49213e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
49229566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
49239566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
492402c68681SHong Zhang 
492502c68681SHong Zhang   /* send and recv i-structure */
49269566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
49279566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
492802c68681SHong Zhang 
49299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
49303e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
49316497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
493202c68681SHong Zhang     if (!len_s[proc]) continue;
49333e06a4e6SHong Zhang     /* form outgoing message for i-structure:
49343e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
49353e06a4e6SHong Zhang                [1:nrows]:           row index (global)
49363e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49373e06a4e6SHong Zhang     */
49382257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49393e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49403e06a4e6SHong Zhang     buf_si[0]   = nrows;
49413e06a4e6SHong Zhang     buf_si_i[0] = 0;
49423e06a4e6SHong Zhang     nrows       = 0;
49433e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49443e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49453e06a4e6SHong Zhang       if (anzi) {
49463e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49473e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49483e06a4e6SHong Zhang         nrows++;
49493e06a4e6SHong Zhang       }
49503e06a4e6SHong Zhang     }
49516497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
495202c68681SHong Zhang     k++;
49532257cef7SHong Zhang     buf_si += len_si[proc];
495402c68681SHong Zhang   }
49552257cef7SHong Zhang 
49569566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49579566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
495802c68681SHong Zhang 
49599566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
496048a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49613e06a4e6SHong Zhang 
49629566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49639566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49649566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49659566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49669566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49679566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49689566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
496958cb9c82SHong Zhang 
4970bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
497158cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
497358cb9c82SHong Zhang   bi[0] = 0;
497458cb9c82SHong Zhang 
4975be0fcf8dSHong Zhang   /* create and initialize a linked list */
4976be0fcf8dSHong Zhang   nlnk = N + 1;
49779566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
497858cb9c82SHong Zhang 
4979bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4980bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49819566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49822205254eSKarl Rupp 
498358cb9c82SHong Zhang   current_space = free_space;
498458cb9c82SHong Zhang 
4985bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49871d79065fSBarry Smith 
49883e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49892257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49903e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49913e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4992a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49933e06a4e6SHong Zhang   }
49942257cef7SHong Zhang 
4995d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4996bcc1bcd5SHong Zhang   len = 0;
499758cb9c82SHong Zhang   for (i = 0; i < m; i++) {
499858cb9c82SHong Zhang     bnzi = 0;
499958cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
500058cb9c82SHong Zhang     arow = owners[rank] + i;
500158cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
500258cb9c82SHong Zhang     aj   = a->j + ai[arow];
50039566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
500458cb9c82SHong Zhang     bnzi += nlnk;
500558cb9c82SHong Zhang     /* add received col data into lnk */
500651a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
500755d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
50083e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
50093e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
50109566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
50113e06a4e6SHong Zhang         bnzi += nlnk;
50129371c9d4SSatish Balay         nextrow[k]++;
50139371c9d4SSatish Balay         nextai[k]++;
50143e06a4e6SHong Zhang       }
501558cb9c82SHong Zhang     }
5016bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
501758cb9c82SHong Zhang 
501858cb9c82SHong Zhang     /* if free space is not available, make more free space */
501948a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
502058cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
50219566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
50229566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
5023bcc1bcd5SHong Zhang 
502458cb9c82SHong Zhang     current_space->array += bnzi;
502558cb9c82SHong Zhang     current_space->local_used += bnzi;
502658cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
502758cb9c82SHong Zhang 
502858cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
502958cb9c82SHong Zhang   }
5030bcc1bcd5SHong Zhang 
50319566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
5032bcc1bcd5SHong Zhang 
50339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
50349566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
50359566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
5036409913e3SHong Zhang 
5037bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50389566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50399566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
504054b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50419566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
504254b84b50SHong Zhang   } else {
50439566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
504454b84b50SHong Zhang   }
50459566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50469566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50479566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5048d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50499566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
505058cb9c82SHong Zhang 
505190431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50526abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5053affca5deSHong Zhang   merge->bi        = bi;
5054affca5deSHong Zhang   merge->bj        = bj;
505502c68681SHong Zhang   merge->buf_ri    = buf_ri;
505602c68681SHong Zhang   merge->buf_rj    = buf_rj;
50570298fd71SBarry Smith   merge->coi       = NULL;
50580298fd71SBarry Smith   merge->coj       = NULL;
50590298fd71SBarry Smith   merge->owners_co = NULL;
5060affca5deSHong Zhang 
50619566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5062bf0cc555SLisandro Dalcin 
5063affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50649566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50659566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
5066*49abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50679566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50689566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5069affca5deSHong Zhang   *mpimat = B_mpi;
507038f152feSBarry Smith 
50719566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5073e5f2cdd8SHong Zhang }
507425616d81SHong Zhang 
5075cc4c1da9SBarry Smith /*@
507611a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5077d4036a1aSHong Zhang   matrices from each processor
5078d4036a1aSHong Zhang 
5079d083f849SBarry Smith   Collective
5080d4036a1aSHong Zhang 
5081d4036a1aSHong Zhang   Input Parameters:
5082d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5083d4036a1aSHong Zhang . seqmat - the input sequential matrices
508411a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
508511a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
508611a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5087d4036a1aSHong Zhang 
5088d4036a1aSHong Zhang   Output Parameter:
5089d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5090d4036a1aSHong Zhang 
5091d4036a1aSHong Zhang   Level: advanced
5092d4036a1aSHong Zhang 
509311a5261eSBarry Smith   Note:
5094d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5095d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
5096b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
50972ef1f0ffSBarry Smith 
50981cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5099d4036a1aSHong Zhang @*/
5100d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5101d71ae5a4SJacob Faibussowitsch {
51027e63b356SHong Zhang   PetscMPIInt size;
510355d1abb9SHong Zhang 
510455d1abb9SHong Zhang   PetscFunctionBegin;
51059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
51067e63b356SHong Zhang   if (size == 1) {
51079566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
51087e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
51099566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
51107e63b356SHong Zhang     } else {
51119566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
51127e63b356SHong Zhang     }
51139566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51143ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
51157e63b356SHong Zhang   }
51169566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
511748a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
51189566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
51199566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
512155d1abb9SHong Zhang }
51224ebed01fSBarry Smith 
5123bc08b0f1SBarry Smith /*@
51242920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
51258a9c020eSBarry Smith 
51268a9c020eSBarry Smith   Not Collective
51278a9c020eSBarry Smith 
51282fe279fdSBarry Smith   Input Parameter:
512920f4b53cSBarry Smith . A - the matrix
51308a9c020eSBarry Smith 
51318a9c020eSBarry Smith   Output Parameter:
51328a9c020eSBarry Smith . A_loc - the local sequential matrix generated
51338a9c020eSBarry Smith 
51348a9c020eSBarry Smith   Level: developer
51358a9c020eSBarry Smith 
51368a9c020eSBarry Smith   Notes:
51372920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51382920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51392920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51402920cce0SJacob Faibussowitsch 
514111a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51428a9c020eSBarry Smith 
51432920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51442920cce0SJacob Faibussowitsch 
514511a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51468a9c020eSBarry Smith 
51471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51488a9c020eSBarry Smith @*/
5149d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5150d71ae5a4SJacob Faibussowitsch {
51518a9c020eSBarry Smith   PetscBool mpi;
51528a9c020eSBarry Smith 
51538a9c020eSBarry Smith   PetscFunctionBegin;
51548a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51558a9c020eSBarry Smith   if (mpi) {
51568a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51578a9c020eSBarry Smith   } else {
51588a9c020eSBarry Smith     *A_loc = A;
51598a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51608a9c020eSBarry Smith   }
51613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51628a9c020eSBarry Smith }
51638a9c020eSBarry Smith 
51648a9c020eSBarry Smith /*@
51652920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
516625616d81SHong Zhang 
516732fba14fSHong Zhang   Not Collective
516825616d81SHong Zhang 
516925616d81SHong Zhang   Input Parameters:
517025616d81SHong Zhang + A     - the matrix
517111a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
517225616d81SHong Zhang 
517325616d81SHong Zhang   Output Parameter:
517425616d81SHong Zhang . A_loc - the local sequential matrix generated
517525616d81SHong Zhang 
517625616d81SHong Zhang   Level: developer
517725616d81SHong Zhang 
517877c65a98SStefano Zampini   Notes:
51792920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51802920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51812920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51822920cce0SJacob Faibussowitsch 
518311a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51848a9c020eSBarry Smith 
51852920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51862920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51872920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51882920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
518977c65a98SStefano Zampini 
51901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
519125616d81SHong Zhang @*/
5192d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5193d71ae5a4SJacob Faibussowitsch {
519401b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5195b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5196b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5197ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5198ce496241SStefano Zampini   PetscScalar       *ca, *cam;
519977c65a98SStefano Zampini   PetscMPIInt        size;
5200d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
52015a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
52028661ff28SBarry Smith   PetscBool          match;
520325616d81SHong Zhang 
520425616d81SHong Zhang   PetscFunctionBegin;
52059566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
520628b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
52079566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
520877c65a98SStefano Zampini   if (size == 1) {
520977c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52109566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
521177c65a98SStefano Zampini       *A_loc = mpimat->A;
521277c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52139566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
521477c65a98SStefano Zampini     }
52153ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
521677c65a98SStefano Zampini   }
521770a9ba44SHong Zhang 
52189566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5219f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5220f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
52219371c9d4SSatish Balay   ai = a->i;
52229371c9d4SSatish Balay   aj = a->j;
52239371c9d4SSatish Balay   bi = b->i;
52249371c9d4SSatish Balay   bj = b->j;
52259566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
52269566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5227ce496241SStefano Zampini   aa = aav;
5228ce496241SStefano Zampini   ba = bav;
522901b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
52309566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5231dea91ad1SHong Zhang     ci[0] = 0;
5232ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
52339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
52349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5235dea91ad1SHong Zhang     k = 0;
523601b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52375a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52385a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
523901b7ae99SHong Zhang       /* off-diagonal portion of A */
52405a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52415a7d977cSHong Zhang         col = cmap[*bj];
52425a7d977cSHong Zhang         if (col >= cstart) break;
52439371c9d4SSatish Balay         cj[k] = col;
52449371c9d4SSatish Balay         bj++;
52455a7d977cSHong Zhang         ca[k++] = *ba++;
52465a7d977cSHong Zhang       }
52475a7d977cSHong Zhang       /* diagonal portion of A */
52485a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52495a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52505a7d977cSHong Zhang         ca[k++] = *aa++;
52515a7d977cSHong Zhang       }
52525a7d977cSHong Zhang       /* off-diagonal portion of A */
52535a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52545a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52555a7d977cSHong Zhang         ca[k++] = *ba++;
52565a7d977cSHong Zhang       }
525725616d81SHong Zhang     }
5258dea91ad1SHong Zhang     /* put together the new matrix */
52599566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5260dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5261dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5262dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5263e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5264e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5265dea91ad1SHong Zhang     mat->nonew   = 0;
52665a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52675a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5268fff043a9SJunchao Zhang     ci  = mat->i;
5269fff043a9SJunchao Zhang     cj  = mat->j;
52709566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52715a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52725a7d977cSHong Zhang       /* off-diagonal portion of A */
52735a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52745a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52755a7d977cSHong Zhang         col = cmap[*bj];
52765a7d977cSHong Zhang         if (col >= cstart) break;
52779371c9d4SSatish Balay         *cam++ = *ba++;
52789371c9d4SSatish Balay         bj++;
52795a7d977cSHong Zhang       }
52805a7d977cSHong Zhang       /* diagonal portion of A */
5281ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5282a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52835a7d977cSHong Zhang       /* off-diagonal portion of A */
5284f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52859371c9d4SSatish Balay         *cam++ = *ba++;
52869371c9d4SSatish Balay         bj++;
5287f33d1a9aSHong Zhang       }
52885a7d977cSHong Zhang     }
52899566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
529098921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52939566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
529525616d81SHong Zhang }
529625616d81SHong Zhang 
5297ed502f03SStefano Zampini /*@
529811a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52994cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5300ed502f03SStefano Zampini 
5301ed502f03SStefano Zampini   Not Collective
5302ed502f03SStefano Zampini 
5303ed502f03SStefano Zampini   Input Parameters:
5304ed502f03SStefano Zampini + A     - the matrix
530511a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5306ed502f03SStefano Zampini 
5307d8d19677SJose E. Roman   Output Parameters:
53082ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5309ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5310ed502f03SStefano Zampini 
5311ed502f03SStefano Zampini   Level: developer
5312ed502f03SStefano Zampini 
531311a5261eSBarry Smith   Note:
53142ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
53154cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5316ed502f03SStefano Zampini 
53171cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5318ed502f03SStefano Zampini @*/
5319d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5320d71ae5a4SJacob Faibussowitsch {
5321ed502f03SStefano Zampini   Mat             Ao, Ad;
5322ed502f03SStefano Zampini   const PetscInt *cmap;
5323ed502f03SStefano Zampini   PetscMPIInt     size;
5324ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5325ed502f03SStefano Zampini 
5326ed502f03SStefano Zampini   PetscFunctionBegin;
53279566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
53289566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5329ed502f03SStefano Zampini   if (size == 1) {
5330ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
53319566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5332ed502f03SStefano Zampini       *A_loc = Ad;
5333ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53349566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5335ed502f03SStefano Zampini     }
53369566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53373ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5338ed502f03SStefano Zampini   }
53399566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53409566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5341ed502f03SStefano Zampini   if (f) {
53429566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5343ed502f03SStefano Zampini   } else {
5344ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5345ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5346ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5347ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5348ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5349ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5350ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5351ed502f03SStefano Zampini     PetscScalar       *ca;
5352ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5353ed502f03SStefano Zampini 
53549566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53559566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53569566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53579566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5358ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5359ed502f03SStefano Zampini       PetscInt k;
53609566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53619566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53629566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5363ed502f03SStefano Zampini       ci[0] = 0;
5364ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5365ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5366ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5367ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5368ed502f03SStefano Zampini         /* diagonal portion of A */
5369ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5370ed502f03SStefano Zampini           cj[k] = *aj++;
5371ed502f03SStefano Zampini           ca[k] = *aa++;
5372ed502f03SStefano Zampini         }
5373ed502f03SStefano Zampini         /* off-diagonal portion of A */
5374ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5375ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5376ed502f03SStefano Zampini           ca[k] = *ba++;
5377ed502f03SStefano Zampini         }
5378ed502f03SStefano Zampini       }
5379ed502f03SStefano Zampini       /* put together the new matrix */
53809566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5381ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5382ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5383ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5384ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5385ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5386ed502f03SStefano Zampini       c->nonew   = 0;
53879566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5388ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53899566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5390ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5391ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5392ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5393ed502f03SStefano Zampini         /* diagonal portion of A */
5394ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5395ed502f03SStefano Zampini         /* off-diagonal portion of A */
5396ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5397ed502f03SStefano Zampini       }
53989566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
539998921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
54009566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
54019566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5402ed502f03SStefano Zampini     if (glob) {
5403ed502f03SStefano Zampini       PetscInt cst, *gidx;
5404ed502f03SStefano Zampini 
54059566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
54069566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5407ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5408ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
54099566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5410ed502f03SStefano Zampini     }
5411ed502f03SStefano Zampini   }
54129566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
54133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5414ed502f03SStefano Zampini }
5415ed502f03SStefano Zampini 
541632fba14fSHong Zhang /*@C
541711a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
541832fba14fSHong Zhang 
541932fba14fSHong Zhang   Not Collective
542032fba14fSHong Zhang 
542132fba14fSHong Zhang   Input Parameters:
542232fba14fSHong Zhang + A     - the matrix
542311a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
542420f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
542520f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
542632fba14fSHong Zhang 
542732fba14fSHong Zhang   Output Parameter:
542832fba14fSHong Zhang . A_loc - the local sequential matrix generated
542932fba14fSHong Zhang 
543032fba14fSHong Zhang   Level: developer
543132fba14fSHong Zhang 
54321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
543332fba14fSHong Zhang @*/
5434d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5435d71ae5a4SJacob Faibussowitsch {
543632fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
543732fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
543832fba14fSHong Zhang   IS          isrowa, iscola;
543932fba14fSHong Zhang   Mat        *aloc;
54404a2b5492SBarry Smith   PetscBool   match;
544132fba14fSHong Zhang 
544232fba14fSHong Zhang   PetscFunctionBegin;
54439566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
544428b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54459566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
544632fba14fSHong Zhang   if (!row) {
54479371c9d4SSatish Balay     start = A->rmap->rstart;
54489371c9d4SSatish Balay     end   = A->rmap->rend;
54499566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
545032fba14fSHong Zhang   } else {
545132fba14fSHong Zhang     isrowa = *row;
545232fba14fSHong Zhang   }
545332fba14fSHong Zhang   if (!col) {
5454d0f46423SBarry Smith     start = A->cmap->rstart;
545532fba14fSHong Zhang     cmap  = a->garray;
5456d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5457d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54589566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
545932fba14fSHong Zhang     ncols = 0;
546032fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
546132fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
546232fba14fSHong Zhang       else break;
546332fba14fSHong Zhang     }
546432fba14fSHong Zhang     imark = i;
546532fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
546632fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54679566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
546832fba14fSHong Zhang   } else {
546932fba14fSHong Zhang     iscola = *col;
547032fba14fSHong Zhang   }
547132fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54729566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
547332fba14fSHong Zhang     aloc[0] = *A_loc;
547432fba14fSHong Zhang   }
54759566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5476109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54779566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5478109e0772SStefano Zampini   }
547932fba14fSHong Zhang   *A_loc = aloc[0];
54809566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
548148a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
548248a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54839566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
548532fba14fSHong Zhang }
548632fba14fSHong Zhang 
54875c65b9ecSFande Kong /*
54885c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54895c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54905c65b9ecSFande Kong  * on a global size.
54915c65b9ecSFande Kong  * */
5492ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5493d71ae5a4SJacob Faibussowitsch {
54945c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5495f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5496131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5497131c27b5Sprj-   PetscMPIInt            owner;
54985c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54995c65b9ecSFande Kong   const PetscInt        *lrowindices;
55005c65b9ecSFande Kong   PetscSF                sf, osf;
55015c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
55025c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
55035c65b9ecSFande Kong   MPI_Comm               comm;
55045c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5505fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
55065c65b9ecSFande Kong 
55075c65b9ecSFande Kong   PetscFunctionBegin;
55089566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
55095c65b9ecSFande Kong   /* plocalsize is the number of roots
55105c65b9ecSFande Kong    * nrows is the number of leaves
55115c65b9ecSFande Kong    * */
55129566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
55139566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
55149566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
55159566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
55165c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55175c65b9ecSFande Kong     /* Find a remote index and an owner for a row
55185c65b9ecSFande Kong      * The row could be local or remote
55195c65b9ecSFande Kong      * */
552034bcad68SFande Kong     owner = 0;
552134bcad68SFande Kong     lidx  = 0;
55229566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
55235c65b9ecSFande Kong     iremote[i].index = lidx;
55245c65b9ecSFande Kong     iremote[i].rank  = owner;
55255c65b9ecSFande Kong   }
55265c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
55279566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5528f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
55295c65b9ecSFande Kong    * offsets
55305c65b9ecSFande Kong    * */
55319566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55329566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55339566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5534bc8e477aSFande Kong 
55359566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
55369566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55379566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55385c65b9ecSFande Kong   roffsets[0] = 0;
55395c65b9ecSFande Kong   roffsets[1] = 0;
55405c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55414cf0e950SBarry Smith     /* diagonal */
55425c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55434cf0e950SBarry Smith     /* off-diagonal */
55445c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55455c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55465c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55475c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55485c65b9ecSFande Kong   }
55499566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55509566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55515c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55529566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55539566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55549566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55559566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55569566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55579566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55589566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55595c65b9ecSFande Kong   dntotalcols = 0;
55605c65b9ecSFande Kong   ontotalcols = 0;
5561bc8e477aSFande Kong   ncol        = 0;
55625c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55635c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5564bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55654cf0e950SBarry Smith     /* diagonal */
55665c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55674cf0e950SBarry Smith     /* off-diagonal */
55685c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55695c65b9ecSFande Kong   }
55705c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55715c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55725c65b9ecSFande Kong    * */
55739566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55749566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55759566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55765c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55774cf0e950SBarry Smith   /* diagonal */
55789566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55794cf0e950SBarry Smith   /* off-diagonal */
55809566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55814cf0e950SBarry Smith   /* diagonal */
55829566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55834cf0e950SBarry Smith   /* off-diagonal */
55849566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55855c65b9ecSFande Kong   dntotalcols = 0;
55865c65b9ecSFande Kong   ontotalcols = 0;
55875c65b9ecSFande Kong   ntotalcols  = 0;
55885c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
558934bcad68SFande Kong     owner = 0;
55909566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55915c65b9ecSFande Kong     /* Set iremote for diag matrix */
55925c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55935c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55945c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55955c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55965c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55975c65b9ecSFande Kong     }
55984cf0e950SBarry Smith     /* off-diagonal */
55995c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
56005c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
56015c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
56025c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
56035c65b9ecSFande Kong     }
56045c65b9ecSFande Kong   }
56059566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
56069566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
56079566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
56089566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
56095c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
56105c65b9ecSFande Kong    * Diag matrix
56115c65b9ecSFande Kong    * */
56129566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
56139566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
56149566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
56155c65b9ecSFande Kong 
56169566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
56174cf0e950SBarry Smith   /* off-diagonal */
56189566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
56199566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
56209566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
56219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56234cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
56249566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56259566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56269566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
56275c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
56285c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
56299566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56305c65b9ecSFande Kong   /* We want P_oth store global indices */
56319566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
56325c65b9ecSFande Kong   /* Use memory scalable approach */
56339566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
56349566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
56359566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56369566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56375c65b9ecSFande Kong   /* Convert back to local indices */
56385c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56399566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56405c65b9ecSFande Kong   nout = 0;
56419566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
564208401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56439566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56445c65b9ecSFande Kong   /* Exchange values */
56459566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56469566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56479566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56489566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56495c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56505c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56535c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56549566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56559566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56569566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56579566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56595c65b9ecSFande Kong }
56605c65b9ecSFande Kong 
56615c65b9ecSFande Kong /*
56625c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56635c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56645c65b9ecSFande Kong  * */
5665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5666d71ae5a4SJacob Faibussowitsch {
56675c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5668bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5669bc8e477aSFande Kong   IS          rows, map;
5670bc8e477aSFande Kong   PetscHMapI  hamp;
5671bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56725c65b9ecSFande Kong   MPI_Comm    comm;
56735c65b9ecSFande Kong   PetscSF     sf, osf;
5674bc8e477aSFande Kong   PetscBool   has;
56755c65b9ecSFande Kong 
56765c65b9ecSFande Kong   PetscFunctionBegin;
56779566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56789566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56795c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56805c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56815c65b9ecSFande Kong    * */
56825c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56835c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5684eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56859566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5686bc8e477aSFande Kong     count = 0;
5687bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5688bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5689bc8e477aSFande Kong       key = a->garray[i] / dof;
56909566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5691bc8e477aSFande Kong       if (!has) {
5692bc8e477aSFande Kong         mapping[i] = count;
56939566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5694bc8e477aSFande Kong       } else {
5695bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5696bc8e477aSFande Kong         mapping[i] = count - 1;
56975c65b9ecSFande Kong       }
5698bc8e477aSFande Kong     }
56999566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
57009566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5701eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
57029566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
57035c65b9ecSFande Kong     off = 0;
57049566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
57059566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
57069566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
57079566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
57085c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
57099566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
57109566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
57119566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
57129566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
57139566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
57145c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
57155c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
571635cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5717fff043a9SJunchao Zhang      */
5718fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5719fff043a9SJunchao Zhang 
57209566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
57219566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
572208401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
57235c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
57245c65b9ecSFande Kong     /* Update values in place */
57259566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
57269566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
57279566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57289566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57299566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57309566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57319566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
57329566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
57336718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
57349566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
57353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57365c65b9ecSFande Kong }
57375c65b9ecSFande Kong 
573825616d81SHong Zhang /*@C
573920f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
574025616d81SHong Zhang 
5741c3339decSBarry Smith   Collective
574225616d81SHong Zhang 
574325616d81SHong Zhang   Input Parameters:
574411a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
574511a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
574611a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
574725616d81SHong Zhang 
5748f1a722f8SMatthew G. Knepley   Output Parameters:
574927430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
575027430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5751f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
575225616d81SHong Zhang 
575325616d81SHong Zhang   Level: developer
575425616d81SHong Zhang 
575520f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
575625616d81SHong Zhang @*/
5757d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5758d71ae5a4SJacob Faibussowitsch {
5759899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5760b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
576125616d81SHong Zhang   IS          isrowb, iscolb;
57620298fd71SBarry Smith   Mat        *bseq = NULL;
576325616d81SHong Zhang 
576425616d81SHong Zhang   PetscFunctionBegin;
576520f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
576620f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57679566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
576825616d81SHong Zhang 
576925616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5770d0f46423SBarry Smith     start = A->cmap->rstart;
577125616d81SHong Zhang     cmap  = a->garray;
5772d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5773d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57749566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
577525616d81SHong Zhang     ncols = 0;
57760390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
577725616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
577825616d81SHong Zhang       else break;
577925616d81SHong Zhang     }
578025616d81SHong Zhang     imark = i;
57810390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57820390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57839566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57849566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
578525616d81SHong Zhang   } else {
578608401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57879371c9d4SSatish Balay     isrowb = *rowb;
57889371c9d4SSatish Balay     iscolb = *colb;
57899566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
579025616d81SHong Zhang     bseq[0] = *B_seq;
579125616d81SHong Zhang   }
57929566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
579325616d81SHong Zhang   *B_seq = bseq[0];
57949566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
579525616d81SHong Zhang   if (!rowb) {
57969566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
579725616d81SHong Zhang   } else {
579825616d81SHong Zhang     *rowb = isrowb;
579925616d81SHong Zhang   }
580025616d81SHong Zhang   if (!colb) {
58019566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
580225616d81SHong Zhang   } else {
580325616d81SHong Zhang     *colb = iscolb;
580425616d81SHong Zhang   }
58059566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
58063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
580725616d81SHong Zhang }
5808429d309bSHong Zhang 
5809f8487c73SHong Zhang /*
581027430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
581101b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5812429d309bSHong Zhang 
5813c3339decSBarry Smith     Collective
5814429d309bSHong Zhang 
5815429d309bSHong Zhang    Input Parameters:
581627430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
581727430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5818429d309bSHong Zhang 
5819429d309bSHong Zhang    Output Parameter:
58200298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
58210298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
58220298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5823598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5824429d309bSHong Zhang 
582511a5261eSBarry Smith     Developer Note:
582611a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
58276eb45d04SBarry Smith      for this matrix. This is not desirable..
58286eb45d04SBarry Smith 
5829429d309bSHong Zhang     Level: developer
5830429d309bSHong Zhang 
5831f8487c73SHong Zhang */
58326497c311SBarry Smith 
5833d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5834d71ae5a4SJacob Faibussowitsch {
5835899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
58364b8d542aSHong Zhang   VecScatter         ctx;
5837ce94432eSBarry Smith   MPI_Comm           comm;
58383515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58396497c311SBarry Smith   PetscMPIInt        nrecvs, nsends;
58403515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5841277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
58426497c311SBarry Smith   PetscInt           i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len;
5843277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5844ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5845ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5846429d309bSHong Zhang 
5847429d309bSHong Zhang   PetscFunctionBegin;
58489566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58499566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5850a7c7454dSHong Zhang 
585120f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
585220f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58539566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58549566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5855a6b2eed2SHong Zhang 
5856ec07b8f8SHong Zhang   if (size == 1) {
5857ec07b8f8SHong Zhang     startsj_s = NULL;
5858ec07b8f8SHong Zhang     bufa_ptr  = NULL;
585952f7967eSHong Zhang     *B_oth    = NULL;
58603ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5861ec07b8f8SHong Zhang   }
5862ec07b8f8SHong Zhang 
5863fa83eaafSHong Zhang   ctx = a->Mvctx;
58644b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58654b8d542aSHong Zhang 
58669566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58673515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58689566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58699566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5871ddea5d60SJunchao Zhang   rwaits = reqs;
58728e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5873429d309bSHong Zhang 
5874b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5875429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5876a6b2eed2SHong Zhang     /* i-array */
5877a6b2eed2SHong Zhang     /*  post receives */
58789566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5879a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
588074268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5881e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58826497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5883429d309bSHong Zhang     }
5884a6b2eed2SHong Zhang 
5885a6b2eed2SHong Zhang     /* pack the outgoing message */
58869566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58872205254eSKarl Rupp 
58882205254eSKarl Rupp     sstartsj[0] = 0;
58892205254eSKarl Rupp     rstartsj[0] = 0;
5890a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58913515ee7fSJunchao Zhang     if (nsends) {
58923515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58939566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58943515ee7fSJunchao Zhang     }
5895a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58963515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5897e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
589887025532SHong Zhang       for (j = 0; j < nrows; j++) {
5899d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5900e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
59019566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
59022205254eSKarl Rupp 
5903e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
59042205254eSKarl Rupp 
5905e42f35eeSHong Zhang           len += ncols;
59069566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5907e42f35eeSHong Zhang         }
5908a6b2eed2SHong Zhang         k++;
5909429d309bSHong Zhang       }
59106497c311SBarry Smith       PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
59112205254eSKarl Rupp 
5912dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5913429d309bSHong Zhang     }
591487025532SHong Zhang     /* recvs and sends of i-array are completed */
59159566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59169566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5917e42f35eeSHong Zhang 
5918a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
59199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
59209566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5921a6b2eed2SHong Zhang 
592287025532SHong Zhang     /* create i-array of B_oth */
59239566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
59242205254eSKarl Rupp 
592587025532SHong Zhang     b_othi[0] = 0;
5926a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5927a6b2eed2SHong Zhang     k         = 0;
5928a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
59293515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
59303515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
593187025532SHong Zhang       for (j = 0; j < nrows; j++) {
593287025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
59339566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5934f91af8c7SBarry Smith         k++;
5935a6b2eed2SHong Zhang       }
5936dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5937a6b2eed2SHong Zhang     }
59389566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5939a6b2eed2SHong Zhang 
59406aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59419566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59429566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5943a6b2eed2SHong Zhang 
594487025532SHong Zhang     /* j-array */
5945a6b2eed2SHong Zhang     /*  post receives of j-array */
5946a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
594787025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59486497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5949a6b2eed2SHong Zhang     }
5950e42f35eeSHong Zhang 
5951e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59523515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5953a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5954e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5955a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
595687025532SHong Zhang       for (j = 0; j < nrows; j++) {
5957d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5958e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59599566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5960ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59619566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5962e42f35eeSHong Zhang         }
596387025532SHong Zhang       }
59646497c311SBarry Smith       PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
596587025532SHong Zhang     }
596687025532SHong Zhang 
596787025532SHong Zhang     /* recvs and sends of j-array are completed */
59689566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
596987025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5970b7f45c76SHong Zhang     sstartsj = *startsj_s;
59711d79065fSBarry Smith     rstartsj = *startsj_r;
597287025532SHong Zhang     bufa     = *bufa_ptr;
59739566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5974ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
597587025532SHong Zhang 
597687025532SHong Zhang   /* a-array */
597787025532SHong Zhang   /*  post receives of a-array */
597887025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
597987025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59806497c311SBarry Smith     PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
598187025532SHong Zhang   }
5982e42f35eeSHong Zhang 
5983e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59843515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
598587025532SHong Zhang   for (i = 0; i < nsends; i++) {
5986e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
598787025532SHong Zhang     bufA  = bufa + sstartsj[i];
598887025532SHong Zhang     for (j = 0; j < nrows; j++) {
5989d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5990e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59919566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5992ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59939566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5994e42f35eeSHong Zhang       }
5995a6b2eed2SHong Zhang     }
59966497c311SBarry Smith     PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5997a6b2eed2SHong Zhang   }
599887025532SHong Zhang   /* recvs and sends of a-array are completed */
59999566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
60009566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
6001a6b2eed2SHong Zhang 
600287025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
6003dd460d27SBarry Smith     Mat_SeqAIJ *b_oth;
6004dd460d27SBarry Smith 
6005a6b2eed2SHong Zhang     /* put together the new matrix */
60069566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
6007a6b2eed2SHong Zhang 
6008a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
6009a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
601087025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
6011e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
6012e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
601387025532SHong Zhang     b_oth->nonew   = 0;
6014a6b2eed2SHong Zhang 
60159566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
6016b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
60179566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
60189566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
6019dea91ad1SHong Zhang     } else {
6020b7f45c76SHong Zhang       *startsj_s = sstartsj;
60211d79065fSBarry Smith       *startsj_r = rstartsj;
602287025532SHong Zhang       *bufa_ptr  = bufa;
602387025532SHong Zhang     }
6024fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
60259566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
6026dea91ad1SHong Zhang   }
60273515ee7fSJunchao Zhang 
60289566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
60299566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
60309566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
60313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6032429d309bSHong Zhang }
6033ccd8e176SBarry Smith 
6034cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
6035cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
6036ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60379779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6038a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6039191b95cbSRichard Tran Mills #endif
6040ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6041cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60425d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6043cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60445d7652ecSHong Zhang #endif
6045d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6046d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6047d24d4204SJose E. Roman #endif
604863c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
604963c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
605063c07aadSStefano Zampini #endif
60513338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60523338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60533338378cSStefano Zampini #endif
6054d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6055d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6056d5e393b6SSuyash Tandon #endif
60573d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60583d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60593d0639e7SStefano Zampini #endif
6060d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60614222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60624222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
606317667f90SBarry Smith 
6064fc4dec0aSBarry Smith /*
6065fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6066fc4dec0aSBarry Smith 
6067fc4dec0aSBarry Smith                n                       p                          p
60682da392ccSBarry Smith         [             ]       [             ]         [                 ]
60692da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60702da392ccSBarry Smith         [             ]       [             ]         [                 ]
6071fc4dec0aSBarry Smith 
6072fc4dec0aSBarry Smith */
6073d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6074d71ae5a4SJacob Faibussowitsch {
6075fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6076fc4dec0aSBarry Smith 
6077fc4dec0aSBarry Smith   PetscFunctionBegin;
60789566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60799566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
6080fb842aefSJose E. Roman   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct));
60819566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60829566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60837fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60849566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60859566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6087fc4dec0aSBarry Smith }
6088fc4dec0aSBarry Smith 
6089d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6090d71ae5a4SJacob Faibussowitsch {
60916718818eSStefano Zampini   PetscBool cisdense;
6092fc4dec0aSBarry Smith 
6093fc4dec0aSBarry Smith   PetscFunctionBegin;
609408401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60959566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60969566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6097d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
609848a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60999566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6100f75ecaa4SHong Zhang 
61014222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
61023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6103fc4dec0aSBarry Smith }
6104fc4dec0aSBarry Smith 
6105d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6106d71ae5a4SJacob Faibussowitsch {
61074222ddf1SHong Zhang   Mat_Product *product = C->product;
61084222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6109fc4dec0aSBarry Smith 
6110fc4dec0aSBarry Smith   PetscFunctionBegin;
611120f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
611220f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
61134222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
61144222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
61153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6116fc4dec0aSBarry Smith }
6117fc4dec0aSBarry Smith 
6118d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6119d71ae5a4SJacob Faibussowitsch {
61204222ddf1SHong Zhang   Mat_Product *product = C->product;
61214222ddf1SHong Zhang 
61224222ddf1SHong Zhang   PetscFunctionBegin;
612348a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
61243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61254222ddf1SHong Zhang }
6126394ed5ebSJunchao Zhang 
612727430b45SBarry Smith /*
612827430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6129394ed5ebSJunchao Zhang 
6130394ed5ebSJunchao Zhang   Input Parameters:
6131394ed5ebSJunchao Zhang 
6132651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6133651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6134394ed5ebSJunchao Zhang 
6135158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6136394ed5ebSJunchao Zhang 
6137394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6138394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6139394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6140394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6141394ed5ebSJunchao Zhang 
6142394ed5ebSJunchao Zhang     Similar for Set2.
6143394ed5ebSJunchao Zhang 
6144394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6145394ed5ebSJunchao Zhang 
6146158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6147394ed5ebSJunchao Zhang 
6148394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6149394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6150394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6151394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6152394ed5ebSJunchao Zhang */
6153d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6154d71ae5a4SJacob Faibussowitsch {
6155394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6156394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6157394ed5ebSJunchao Zhang 
6158394ed5ebSJunchao Zhang   PetscFunctionBegin;
61599566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6160394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6161394ed5ebSJunchao Zhang   i[0]        = 0;
6162394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6163394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6164394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6165394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6166394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6167394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6168394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6169394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6170394ed5ebSJunchao Zhang         imap1[t1] = t;
6171394ed5ebSJunchao Zhang         imap2[t2] = t;
6172394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6173394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61749371c9d4SSatish Balay         t1++;
61759371c9d4SSatish Balay         t2++;
61769371c9d4SSatish Balay         t++;
6177394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6178394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6179394ed5ebSJunchao Zhang         imap1[t1] = t;
6180394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61819371c9d4SSatish Balay         t1++;
61829371c9d4SSatish Balay         t++;
6183394ed5ebSJunchao Zhang       } else {
6184394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6185394ed5ebSJunchao Zhang         imap2[t2] = t;
6186394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61879371c9d4SSatish Balay         t2++;
61889371c9d4SSatish Balay         t++;
6189394ed5ebSJunchao Zhang       }
6190394ed5ebSJunchao Zhang     }
6191394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6192394ed5ebSJunchao Zhang     while (b1 < e1) {
6193394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6194394ed5ebSJunchao Zhang       imap1[t1] = t;
6195394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61969371c9d4SSatish Balay       t1++;
61979371c9d4SSatish Balay       t++;
6198394ed5ebSJunchao Zhang     }
6199394ed5ebSJunchao Zhang     while (b2 < e2) {
6200394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6201394ed5ebSJunchao Zhang       imap2[t2] = t;
6202394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
62039371c9d4SSatish Balay       t2++;
62049371c9d4SSatish Balay       t++;
6205394ed5ebSJunchao Zhang     }
62066497c311SBarry Smith     PetscCall(PetscIntCast(t, i + r + 1));
6207394ed5ebSJunchao Zhang   }
62083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6209394ed5ebSJunchao Zhang }
6210394ed5ebSJunchao Zhang 
621127430b45SBarry Smith /*
621227430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6213394ed5ebSJunchao Zhang 
6214394ed5ebSJunchao Zhang   Input Parameters:
6215394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6216394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6217394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6218394ed5ebSJunchao Zhang 
6219394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6220394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6221394ed5ebSJunchao Zhang 
6222394ed5ebSJunchao Zhang   Output Parameters:
6223394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6224394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6225394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6226394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6227394ed5ebSJunchao Zhang 
6228394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6229158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6230158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6231394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6232394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6233394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6234394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6235394ed5ebSJunchao Zhang 
6236394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6237394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6238394ed5ebSJunchao Zhang 
6239394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6240394ed5ebSJunchao Zhang 
6241158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6242394ed5ebSJunchao Zhang */
6243d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6244d71ae5a4SJacob Faibussowitsch {
6245394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6246394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6247394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6248394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6249394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6250394ed5ebSJunchao Zhang 
6251394ed5ebSJunchao Zhang   PetscFunctionBegin;
62529566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62539566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6254394ed5ebSJunchao Zhang   m = rend - rstart;
6255394ed5ebSJunchao Zhang 
6256651b1cf9SStefano Zampini   /* Skip negative rows */
6257651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62589371c9d4SSatish Balay     if (i[k] >= 0) break;
6259394ed5ebSJunchao Zhang 
6260394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6261394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6262394ed5ebSJunchao Zhang   */
6263394ed5ebSJunchao Zhang   while (k < n) {
6264394ed5ebSJunchao Zhang     row = i[k];
6265394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62669371c9d4SSatish Balay     for (s = k; s < n; s++)
62679371c9d4SSatish Balay       if (i[s] != row) break;
6268651b1cf9SStefano Zampini 
62691690c2aeSBarry Smith     /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */
6270394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
62711690c2aeSBarry Smith       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX;
627254c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6273394ed5ebSJunchao Zhang     }
62749566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6275158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6276394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6277394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6278394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6279394ed5ebSJunchao Zhang 
6280394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6281394ed5ebSJunchao Zhang     Atot += mid - k;
6282394ed5ebSJunchao Zhang     Btot += s - mid;
6283394ed5ebSJunchao Zhang 
6284651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6285394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6286394ed5ebSJunchao Zhang       col = j[p];
62879371c9d4SSatish Balay       do {
62881690c2aeSBarry Smith         j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */
62899371c9d4SSatish Balay         p++;
6290651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6291394ed5ebSJunchao Zhang       Annz++;
6292394ed5ebSJunchao Zhang     }
6293394ed5ebSJunchao Zhang 
6294651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6295394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6296394ed5ebSJunchao Zhang       col = j[p];
6297d71ae5a4SJacob Faibussowitsch       do {
6298d71ae5a4SJacob Faibussowitsch         p++;
6299d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6300394ed5ebSJunchao Zhang       Bnnz++;
6301394ed5ebSJunchao Zhang     }
6302394ed5ebSJunchao Zhang     k = s;
6303394ed5ebSJunchao Zhang   }
6304394ed5ebSJunchao Zhang 
6305394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6306158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6307158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6308158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6309158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6310394ed5ebSJunchao Zhang 
63116aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6312394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6313394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6314394ed5ebSJunchao Zhang     k   = rowBegin[r];
6315394ed5ebSJunchao Zhang     mid = rowMid[r];
6316394ed5ebSJunchao Zhang     s   = rowEnd[r];
63178e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
63188e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6319394ed5ebSJunchao Zhang     Atot += mid - k;
6320394ed5ebSJunchao Zhang     Btot += s - mid;
6321394ed5ebSJunchao Zhang 
6322394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6323394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6324394ed5ebSJunchao Zhang       col = j[p];
6325394ed5ebSJunchao Zhang       q   = p;
6326d71ae5a4SJacob Faibussowitsch       do {
6327d71ae5a4SJacob Faibussowitsch         p++;
6328d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6329394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6330394ed5ebSJunchao Zhang       Annz++;
6331394ed5ebSJunchao Zhang     }
6332394ed5ebSJunchao Zhang 
6333394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6334394ed5ebSJunchao Zhang       col = j[p];
6335394ed5ebSJunchao Zhang       q   = p;
6336d71ae5a4SJacob Faibussowitsch       do {
6337d71ae5a4SJacob Faibussowitsch         p++;
6338d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6339394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6340394ed5ebSJunchao Zhang       Bnnz++;
6341394ed5ebSJunchao Zhang     }
6342394ed5ebSJunchao Zhang   }
6343394ed5ebSJunchao Zhang   /* Output */
6344394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6345394ed5ebSJunchao Zhang   *Annz_  = Annz;
6346394ed5ebSJunchao Zhang   *Atot_  = Atot;
6347394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6348394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6349394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6350394ed5ebSJunchao Zhang   *Btot_  = Btot;
6351394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6353394ed5ebSJunchao Zhang }
6354394ed5ebSJunchao Zhang 
635527430b45SBarry Smith /*
635627430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6357158ec288SJunchao Zhang 
6358158ec288SJunchao Zhang   Input Parameters:
6359158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6360158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6361158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6362651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6363158ec288SJunchao Zhang 
6364158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6365158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6366158ec288SJunchao Zhang 
6367158ec288SJunchao Zhang   Example:
6368158ec288SJunchao Zhang     nnz1 = 4
6369158ec288SJunchao Zhang     nnz  = 6
6370158ec288SJunchao Zhang     imap = [1,3,4,5]
6371158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6372158ec288SJunchao Zhang    then,
6373158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6374158ec288SJunchao Zhang */
6375d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6376d71ae5a4SJacob Faibussowitsch {
6377158ec288SJunchao Zhang   PetscCount k, p;
6378158ec288SJunchao Zhang 
6379158ec288SJunchao Zhang   PetscFunctionBegin;
6380158ec288SJunchao Zhang   jmap_new[0] = 0;
6381158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6382158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6383158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6384158ec288SJunchao Zhang   }
6385158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6387158ec288SJunchao Zhang }
6388158ec288SJunchao Zhang 
6389*49abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data)
63902c4ab24aSJunchao Zhang {
6391*49abdd8aSBarry Smith   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data;
63922c4ab24aSJunchao Zhang 
63932c4ab24aSJunchao Zhang   PetscFunctionBegin;
63942c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63952c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63962c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63972c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63982c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63992c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
64002c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
64012c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
64022c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
64032c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
64042c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
64052c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
64062c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
64072c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
64082c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
64092c4ab24aSJunchao Zhang }
64102c4ab24aSJunchao Zhang 
6411d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6412d71ae5a4SJacob Faibussowitsch {
6413394ed5ebSJunchao Zhang   MPI_Comm             comm;
6414394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6415394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6416394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6417394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
64182c4ab24aSJunchao Zhang   PetscContainer       container;
64192c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6420394ed5ebSJunchao Zhang 
6421394ed5ebSJunchao Zhang   PetscFunctionBegin;
64229566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
64239566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6424cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6425eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6426cbc6b225SStefano Zampini #else
64279566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6428cbc6b225SStefano Zampini #endif
64299566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6430cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6431cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6432cbc6b225SStefano Zampini 
64339566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
64349566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
64359566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
64369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64379566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64389566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64399566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64409566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64419566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6442394ed5ebSJunchao Zhang 
64436aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6444394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6445394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6446e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6447e8729f6fSJunchao Zhang 
6448e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6449394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6450394ed5ebSJunchao Zhang 
6451394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6452394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6453394ed5ebSJunchao Zhang      will have positive row indices.
6454394ed5ebSJunchao Zhang   */
6455394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
64561690c2aeSBarry Smith     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN;                /* e.g., -2^31, minimal to move them ahead */
64571690c2aeSBarry Smith     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */
6458f7d195e4SLawrence Mitchell     else {
6459f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
64601690c2aeSBarry Smith       if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */
6461f7d195e4SLawrence Mitchell     }
6462394ed5ebSJunchao Zhang   }
6463394ed5ebSJunchao Zhang 
6464da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64659566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6466651b1cf9SStefano Zampini 
6467651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6468651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64691690c2aeSBarry Smith     if (i1[k] > PETSC_INT_MIN) break;
64706497c311SBarry Smith   PetscCount i1start = k;
6471651b1cf9SStefano Zampini 
64721690c2aeSBarry Smith   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */
64731690c2aeSBarry Smith   for (; k < rem; k++) i1[k] += PETSC_INT_MAX;                                    /* Revert row indices of local rows*/
6474394ed5ebSJunchao Zhang 
6475394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6476394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6477394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6478394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6479394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6480394ed5ebSJunchao Zhang   const PetscInt *ranges;
6481394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6482394ed5ebSJunchao Zhang 
64839566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6485394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6486394ed5ebSJunchao Zhang     PetscMPIInt owner;
6487394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6488cbc6b225SStefano Zampini 
6489394ed5ebSJunchao Zhang     /* Locate a row range */
6490394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64919566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6492394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6493394ed5ebSJunchao Zhang 
6494394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
64959566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6496394ed5ebSJunchao Zhang 
6497394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6498394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6499394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6500394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6501394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6502cbc6b225SStefano Zampini 
65039566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
65049566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
65059566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
65069566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6507394ed5ebSJunchao Zhang       sendto   = sendto2;
6508394ed5ebSJunchao Zhang       nentries = nentries2;
6509394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6510394ed5ebSJunchao Zhang     }
6511394ed5ebSJunchao Zhang     sendto[nsend] = owner;
65126497c311SBarry Smith     PetscCall(PetscIntCast(p - k, &nentries[nsend]));
6513394ed5ebSJunchao Zhang     nsend++;
6514394ed5ebSJunchao Zhang     k = p;
6515394ed5ebSJunchao Zhang   }
6516394ed5ebSJunchao Zhang 
6517394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6518394ed5ebSJunchao Zhang   PetscSF      sf1;
6519394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6520394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6521394ed5ebSJunchao Zhang   PetscInt    *offsets;
6522394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6523394ed5ebSJunchao Zhang 
65249566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
65259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
65269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6527394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6528394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6529394ed5ebSJunchao Zhang     iremote[k].index = 0;
6530394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
653154c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6532394ed5ebSJunchao Zhang   }
65339566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
65349566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
65359566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
65369566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6537e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6538394ed5ebSJunchao Zhang 
6539394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6540394ed5ebSJunchao Zhang   PetscSF sf2;
6541394ed5ebSJunchao Zhang   nroots  = nroots2;
6542394ed5ebSJunchao Zhang   nleaves = nleaves2;
65439566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65449566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6546394ed5ebSJunchao Zhang   p = 0;
6547394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
654854c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6549394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6550394ed5ebSJunchao Zhang       iremote[p].rank = sendto[k];
65516497c311SBarry Smith       PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index));
6552394ed5ebSJunchao Zhang     }
6553394ed5ebSJunchao Zhang   }
65549566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6555394ed5ebSJunchao Zhang 
6556394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6557394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6558394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6560834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6561834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6562de0a9f35SPierre Jolivet   PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem);
6563de0a9f35SPierre Jolivet   PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem);
6564834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6565834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6566834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6567834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6568394ed5ebSJunchao Zhang 
65699566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65709566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6571394ed5ebSJunchao Zhang 
6572394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6573394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65749566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6575394ed5ebSJunchao Zhang 
6576651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6577651b1cf9SStefano Zampini   PetscCount *Cperm1;
6578834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6579de0a9f35SPierre Jolivet   PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem);
6580651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6581834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6582651b1cf9SStefano Zampini 
6583651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6584651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6585651b1cf9SStefano Zampini   PetscBool hypre;
658617b874c6SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre));
6587651b1cf9SStefano Zampini   if (hypre) {
6588651b1cf9SStefano Zampini     PetscInt *minj;
6589651b1cf9SStefano Zampini     PetscBT   hasdiag;
6590651b1cf9SStefano Zampini 
6591651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6592651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
65931690c2aeSBarry Smith     for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX;
6594651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6595651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6596651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6597651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6598651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6599651b1cf9SStefano Zampini     }
6600651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6601651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6602651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6603651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6604651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6605651b1cf9SStefano Zampini     }
6606651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6607651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6608651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6609651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6610651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6611651b1cf9SStefano Zampini     }
6612651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6613651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6614651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6615651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6616651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6617651b1cf9SStefano Zampini     }
6618651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6619651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6620651b1cf9SStefano Zampini   }
6621651b1cf9SStefano Zampini 
6622651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6623651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6624651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6625651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6626394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6627394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6628394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6629394ed5ebSJunchao Zhang 
6630651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
66319566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6632651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
66339566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6634394ed5ebSJunchao Zhang 
6635394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6636394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6637394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6638394ed5ebSJunchao Zhang 
66399566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6643394ed5ebSJunchao Zhang 
6644394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6645158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6646158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6647158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6648158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6649394ed5ebSJunchao Zhang 
66509566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66519566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6652158ec288SJunchao Zhang 
6653158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6654158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6655158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6656158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6657158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6658158ec288SJunchao Zhang 
6659158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6660158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6661158ec288SJunchao Zhang 
6662158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6663158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6664158ec288SJunchao Zhang 
6665158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6666158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6667158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6668158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66699566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66709566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6671e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66729566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6673394ed5ebSJunchao Zhang 
6674158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6675158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6676158ec288SJunchao Zhang 
6677394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6678394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6679394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66809566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66819566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66829566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6683394ed5ebSJunchao Zhang     Aj = Aj_new;
6684394ed5ebSJunchao Zhang   }
6685394ed5ebSJunchao Zhang 
6686394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6687394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66889566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66899566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66909566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6691394ed5ebSJunchao Zhang     Bj = Bj_new;
6692394ed5ebSJunchao Zhang   }
6693394ed5ebSJunchao Zhang 
6694cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6695394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6696cbc6b225SStefano Zampini   MatType          rtype;
6697394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6698cf8ba265SJunchao Zhang   PetscObjectState state;
66999566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
67009566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6701394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
67029371c9d4SSatish Balay   if (cstart) {
67039371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
67049371c9d4SSatish Balay   }
6705c508b908SBarry Smith 
67069566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6707c508b908SBarry Smith 
6708c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6709c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
67109566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
67110da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6712c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6713c508b908SBarry Smith 
6714c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6715c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
67169566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
67170da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6718c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6719c508b908SBarry Smith 
67209566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
67215bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6722cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6723462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6724cbc6b225SStefano Zampini 
6725394ed5ebSJunchao Zhang   a          = (Mat_SeqAIJ *)mpiaij->A->data;
6726394ed5ebSJunchao Zhang   b          = (Mat_SeqAIJ *)mpiaij->B->data;
67279f0612e4SBarry Smith   a->free_a  = PETSC_TRUE;
67289f0612e4SBarry Smith   a->free_ij = PETSC_TRUE;
67299f0612e4SBarry Smith   b->free_a  = PETSC_TRUE;
67309f0612e4SBarry Smith   b->free_ij = PETSC_TRUE;
673117b874c6SStefano Zampini   a->maxnz   = a->nz;
673217b874c6SStefano Zampini   b->maxnz   = b->nz;
6733394ed5ebSJunchao Zhang 
6734cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
67359566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
67369566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
67379566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
67389566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6739cbc6b225SStefano Zampini 
67402c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
67412c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
67422c4ab24aSJunchao Zhang   coo->n       = coo_n;
67432c4ab24aSJunchao Zhang   coo->sf      = sf2;
67442c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
67452c4ab24aSJunchao Zhang   coo->recvlen = nroots;
67462c4ab24aSJunchao Zhang   coo->Annz    = Annz;
67472c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
67482c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
67492c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
67502c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67512c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67522c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67532c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67542c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67552c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67562c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67572c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67582c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67592c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67602c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67612c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67622c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67632c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67642c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67652c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67662c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67672c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67682c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
6769*49abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ));
67702c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67712c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6773394ed5ebSJunchao Zhang }
6774394ed5ebSJunchao Zhang 
6775d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6776d71ae5a4SJacob Faibussowitsch {
6777394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6778394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6779394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67802c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67812c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67822c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67832c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67842c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67852c4ab24aSJunchao Zhang   PetscContainer       container;
67862c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6787394ed5ebSJunchao Zhang 
6788394ed5ebSJunchao Zhang   PetscFunctionBegin;
67892c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67902c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67912c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67922c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67932c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67942c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67952c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67962c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67972c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67982c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67992c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
68002c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
68012c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
68022c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
68032c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
68042c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
68052c4ab24aSJunchao Zhang 
68069566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
68079566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6808394ed5ebSJunchao Zhang 
6809394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
68102c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6811394ed5ebSJunchao Zhang 
6812394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
68132c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6814394ed5ebSJunchao Zhang   /* Add local entries to A and B */
68152c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6816da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6817158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6818158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6819394ed5ebSJunchao Zhang   }
68202c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6821158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6822158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6823158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6824394ed5ebSJunchao Zhang   }
68252c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6826394ed5ebSJunchao Zhang 
6827394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
68282c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6829394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6830394ed5ebSJunchao Zhang   }
68312c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6832394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6833394ed5ebSJunchao Zhang   }
68349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
68359566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
68363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6837394ed5ebSJunchao Zhang }
6838394ed5ebSJunchao Zhang 
6839ccd8e176SBarry Smith /*MC
6840ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6841ccd8e176SBarry Smith 
6842ccd8e176SBarry Smith    Options Database Keys:
684311a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6844ccd8e176SBarry Smith 
6845ccd8e176SBarry Smith    Level: beginner
68460cd7f59aSBarry Smith 
68470cd7f59aSBarry Smith    Notes:
68482ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
68490cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
68500cd7f59aSBarry Smith     in the matrix
68510cd7f59aSBarry Smith 
685211a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
685311a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6854ccd8e176SBarry Smith 
68551cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6856ccd8e176SBarry Smith M*/
6857d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6858d71ae5a4SJacob Faibussowitsch {
6859ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6860ccd8e176SBarry Smith   PetscMPIInt size;
6861ccd8e176SBarry Smith 
6862ccd8e176SBarry Smith   PetscFunctionBegin;
68639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68642205254eSKarl Rupp 
68654dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6866ccd8e176SBarry Smith   B->data       = (void *)b;
6867aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6868ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6869ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6870ccd8e176SBarry Smith   b->size       = size;
68712205254eSKarl Rupp 
68729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6873ccd8e176SBarry Smith 
6874ccd8e176SBarry Smith   /* build cache for off array entries formed */
68759566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68762205254eSKarl Rupp 
6877ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6878f4259b30SLisandro Dalcin   b->colmap      = NULL;
6879f4259b30SLisandro Dalcin   b->garray      = NULL;
6880ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6881ccd8e176SBarry Smith 
6882ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68830298fd71SBarry Smith   b->lvec  = NULL;
68840298fd71SBarry Smith   b->Mvctx = NULL;
6885ccd8e176SBarry Smith 
6886ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6887f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6888f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6889ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6890ccd8e176SBarry Smith 
6891f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68920298fd71SBarry Smith   b->spptr = NULL;
6893f60c3dc2SHong Zhang 
68949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68989566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68999566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
69009566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
69019566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
69029566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
69039566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
69043d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
69059566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
69063d0639e7SStefano Zampini #endif
6907d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6908d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6909d5e393b6SSuyash Tandon #endif
69103d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
69119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
69123d0639e7SStefano Zampini #endif
69139779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
69149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6915191b95cbSRichard Tran Mills #endif
69169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
69179566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
69189566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
69199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
69205d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
69219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
69225d7652ecSHong Zhang #endif
6923d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
69249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6925d24d4204SJose E. Roman #endif
69269566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
69279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
69283dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
69299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
69309566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
69313dad0653Sstefano_zampini #endif
69329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
69339566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
69349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
69359566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
69369566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
69373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6938ccd8e176SBarry Smith }
693981824310SBarry Smith 
69405d83a8b1SBarry Smith /*@
694111a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
694203bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
694303bfb495SBarry Smith 
6944d083f849SBarry Smith   Collective
694503bfb495SBarry Smith 
694603bfb495SBarry Smith   Input Parameters:
694703bfb495SBarry Smith + comm - MPI communicator
694811a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
694903bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6950d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
69512ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
69522ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69532ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6954483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
695504ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
695603bfb495SBarry Smith . a    - matrix values
6957483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69582ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
695903bfb495SBarry Smith - oa   - matrix values
696003bfb495SBarry Smith 
696103bfb495SBarry Smith   Output Parameter:
696203bfb495SBarry Smith . mat - the matrix
696303bfb495SBarry Smith 
696403bfb495SBarry Smith   Level: advanced
696503bfb495SBarry Smith 
696603bfb495SBarry Smith   Notes:
6967f13dfd9eSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user
6968292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
696903bfb495SBarry Smith 
69702ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
697103bfb495SBarry Smith 
69722ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
697303bfb495SBarry Smith 
69747b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69757b55108eSBarry Smith 
6976dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6977dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6978dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6979dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
698011a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6981dca341c0SJed Brown   communication if it is known that only local entries will be set.
698203bfb495SBarry Smith 
69831cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6984db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69852b26979fSBarry Smith @*/
6986d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6987d71ae5a4SJacob Faibussowitsch {
698803bfb495SBarry Smith   Mat_MPIAIJ *maij;
698903bfb495SBarry Smith 
699003bfb495SBarry Smith   PetscFunctionBegin;
699108401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6992aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6993aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69949566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69959566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69969566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
699703bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69982205254eSKarl Rupp 
69998d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
700003bfb495SBarry Smith 
70019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
70029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
700303bfb495SBarry Smith 
70049566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
70059566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
700603bfb495SBarry Smith 
70079566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
70089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
70099566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
70109566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
70119566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
70123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
701303bfb495SBarry Smith }
701403bfb495SBarry Smith 
70154e84afc0SStefano Zampini typedef struct {
70164e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
70174e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
70184e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
70194e84afc0SStefano Zampini 
70204e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
70214e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
70224e84afc0SStefano Zampini   PetscScalar *bufa;
70234e84afc0SStefano Zampini   Mat          P_oth;
70244e84afc0SStefano Zampini 
70254e84afc0SStefano Zampini   /* may take advantage of merging product->B */
7026ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
70274e84afc0SStefano Zampini 
7028ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
70294e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
70304e84afc0SStefano Zampini      of the temporary storage */
70314e84afc0SStefano Zampini   PetscBool reusesym;
70324e84afc0SStefano Zampini 
70334e84afc0SStefano Zampini   /* support for COO values insertion */
7034ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
7035ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
7036ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
7037ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
7038c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
7039c215019aSStefano Zampini   PetscMemType mtype;
70404e84afc0SStefano Zampini 
70414e84afc0SStefano Zampini   /* customization */
70424e84afc0SStefano Zampini   PetscBool abmerge;
7043abb89eb1SStefano Zampini   PetscBool P_oth_bind;
70444e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
70454e84afc0SStefano Zampini 
7046ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
7047d71ae5a4SJacob Faibussowitsch {
70484e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
70494e84afc0SStefano Zampini   PetscInt             i;
70504e84afc0SStefano Zampini 
70514e84afc0SStefano Zampini   PetscFunctionBegin;
70529566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70539566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70549566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70559566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70569566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70579566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70589566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
705948a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70609566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70619566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70629566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70639566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70649566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70659566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70674e84afc0SStefano Zampini }
70684e84afc0SStefano Zampini 
7069fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7070fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7071fff043a9SJunchao Zhang  */
7072d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7073d71ae5a4SJacob Faibussowitsch {
7074c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7075c215019aSStefano Zampini 
7076c215019aSStefano Zampini   PetscFunctionBegin;
70779566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7078c215019aSStefano Zampini   if (f) {
70799566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7080c215019aSStefano Zampini   } else {
7081c215019aSStefano Zampini     const PetscScalar *vv;
7082c215019aSStefano Zampini 
70839566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7084c215019aSStefano Zampini     if (n && idx) {
7085c215019aSStefano Zampini       PetscScalar    *w  = v;
7086c215019aSStefano Zampini       const PetscInt *oi = idx;
7087c215019aSStefano Zampini       PetscInt        j;
7088c215019aSStefano Zampini 
7089c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7090c215019aSStefano Zampini     } else {
70919566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7092c215019aSStefano Zampini     }
70939566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7094c215019aSStefano Zampini   }
70953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7096c215019aSStefano Zampini }
7097c215019aSStefano Zampini 
7098d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7099d71ae5a4SJacob Faibussowitsch {
71004e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
71014e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
71024e84afc0SStefano Zampini 
71034e84afc0SStefano Zampini   PetscFunctionBegin;
71044e84afc0SStefano Zampini   MatCheckProduct(C, 1);
710528b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
71064e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
71074e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
710848a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
710948a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
71104e84afc0SStefano Zampini   }
71114e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7112abb89eb1SStefano Zampini 
7113abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
711408401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
71159566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7116abb89eb1SStefano Zampini   }
71174e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
71186497c311SBarry Smith     PetscInt noff;
71194e84afc0SStefano Zampini 
71206497c311SBarry Smith     PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff));
71214e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
71224e84afc0SStefano Zampini     if (noff) {
71236497c311SBarry Smith       PetscInt nown;
7124c215019aSStefano Zampini 
71256497c311SBarry Smith       PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown));
71269566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
71279566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
71284e84afc0SStefano Zampini       n_o += noff;
71294e84afc0SStefano Zampini       n_d += nown;
71304e84afc0SStefano Zampini     } else {
7131c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7132c215019aSStefano Zampini 
71339566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
71344e84afc0SStefano Zampini       n_d += mm->nz;
71354e84afc0SStefano Zampini     }
71364e84afc0SStefano Zampini   }
7137c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
71389566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71399566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71404e84afc0SStefano Zampini   }
71419566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
71423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71434e84afc0SStefano Zampini }
71444e84afc0SStefano Zampini 
71454e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
71464e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7147d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7148d71ae5a4SJacob Faibussowitsch {
71494e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7150ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71514e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71524e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71534e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71544e84afc0SStefano Zampini   IS                     glob      = NULL;
71554e84afc0SStefano Zampini   const char            *prefix;
71564e84afc0SStefano Zampini   char                   pprefix[256];
71574e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
715882a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
715982a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7160ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7161ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7162ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7163ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7164ddea5d60SJunchao Zhang 
71654e84afc0SStefano Zampini   MatProductType ptype;
7166d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71674e84afc0SStefano Zampini   PetscMPIInt    size;
71684e84afc0SStefano Zampini 
71694e84afc0SStefano Zampini   PetscFunctionBegin;
71704e84afc0SStefano Zampini   MatCheckProduct(C, 1);
717128b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71724e84afc0SStefano Zampini   ptype = product->type;
7173b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7174fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7175fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7176fa046f9fSJunchao Zhang   }
71774e84afc0SStefano Zampini   switch (ptype) {
71784e84afc0SStefano Zampini   case MATPRODUCT_AB:
71794e84afc0SStefano Zampini     A          = product->A;
71804e84afc0SStefano Zampini     P          = product->B;
71814e84afc0SStefano Zampini     m          = A->rmap->n;
71824e84afc0SStefano Zampini     n          = P->cmap->n;
71834e84afc0SStefano Zampini     M          = A->rmap->N;
71844e84afc0SStefano Zampini     N          = P->cmap->N;
7185ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71864e84afc0SStefano Zampini     break;
71874e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71884e84afc0SStefano Zampini     P          = product->A;
71894e84afc0SStefano Zampini     A          = product->B;
71904e84afc0SStefano Zampini     m          = P->cmap->n;
71914e84afc0SStefano Zampini     n          = A->cmap->n;
71924e84afc0SStefano Zampini     M          = P->cmap->N;
71934e84afc0SStefano Zampini     N          = A->cmap->N;
71944e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71954e84afc0SStefano Zampini     break;
71964e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71974e84afc0SStefano Zampini     A          = product->A;
71984e84afc0SStefano Zampini     P          = product->B;
71994e84afc0SStefano Zampini     m          = P->cmap->n;
72004e84afc0SStefano Zampini     n          = P->cmap->n;
72014e84afc0SStefano Zampini     M          = P->cmap->N;
72024e84afc0SStefano Zampini     N          = P->cmap->N;
72034e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
72044e84afc0SStefano Zampini     break;
7205d71ae5a4SJacob Faibussowitsch   default:
7206d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
72074e84afc0SStefano Zampini   }
72089566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
72094e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
72104e84afc0SStefano Zampini 
72114e84afc0SStefano Zampini   /* defaults */
72124e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
72134e84afc0SStefano Zampini     mp[i]    = NULL;
72144e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
72154e84afc0SStefano Zampini     rmapt[i] = -1;
72164e84afc0SStefano Zampini     cmapt[i] = -1;
72174e84afc0SStefano Zampini     rmapa[i] = NULL;
72184e84afc0SStefano Zampini     cmapa[i] = NULL;
72194e84afc0SStefano Zampini   }
72204e84afc0SStefano Zampini 
72214e84afc0SStefano Zampini   /* customization */
72229566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
72234e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
72244e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
72254e84afc0SStefano Zampini     if (product->api_user) {
7226d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
72279566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72289566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7229d0609cedSBarry Smith       PetscOptionsEnd();
72304e84afc0SStefano Zampini     } else {
7231d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
72329566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72339566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7234d0609cedSBarry Smith       PetscOptionsEnd();
7235abb89eb1SStefano Zampini     }
7236abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7237abb89eb1SStefano Zampini     if (product->api_user) {
7238d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
72399566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7240d0609cedSBarry Smith       PetscOptionsEnd();
7241abb89eb1SStefano Zampini     } else {
7242d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
72439566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7244d0609cedSBarry Smith       PetscOptionsEnd();
72454e84afc0SStefano Zampini     }
72464e84afc0SStefano Zampini   }
72474e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
72484e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
72499566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72509566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72519566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72529566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72539566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7254ddea5d60SJunchao Zhang 
7255ddea5d60SJunchao Zhang   cp = 0;
72564e84afc0SStefano Zampini   switch (ptype) {
72574e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72589566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72594e84afc0SStefano Zampini 
7260ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7261ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72624e84afc0SStefano Zampini       /* P is product->B */
72639566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72649566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72659566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72669566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72679566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72689566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72699566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72704e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72719566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72729566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72739566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72744e84afc0SStefano Zampini       rmapt[cp] = 1;
72754e84afc0SStefano Zampini       cmapt[cp] = 2;
72764e84afc0SStefano Zampini       cmapa[cp] = globidx;
72774e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72784e84afc0SStefano Zampini       cp++;
7279ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72809566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72819566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72829566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72839566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72849566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72859566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72864e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72879566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72889566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72894e84afc0SStefano Zampini       rmapt[cp] = 1;
72904e84afc0SStefano Zampini       cmapt[cp] = 1;
72914e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72924e84afc0SStefano Zampini       cp++;
72939566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72949566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72959566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72969566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72979566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72989566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72994e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73009566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73019566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73024e84afc0SStefano Zampini       rmapt[cp] = 1;
73034e84afc0SStefano Zampini       cmapt[cp] = 2;
73044e84afc0SStefano Zampini       cmapa[cp] = p->garray;
73054e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73064e84afc0SStefano Zampini       cp++;
73074e84afc0SStefano Zampini     }
7308ddea5d60SJunchao Zhang 
7309ddea5d60SJunchao Zhang     /* A_off * P_other */
73104e84afc0SStefano Zampini     if (mmdata->P_oth) {
73119566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
73129566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7313f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73149566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73159566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73169566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73179566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73189566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73199566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73209566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73214e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73229566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73239566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73244e84afc0SStefano Zampini       rmapt[cp] = 1;
73254e84afc0SStefano Zampini       cmapt[cp] = 2;
73264e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73274e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73284e84afc0SStefano Zampini       cp++;
73294e84afc0SStefano Zampini     }
73304e84afc0SStefano Zampini     break;
7331ddea5d60SJunchao Zhang 
73324e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
73334e84afc0SStefano Zampini     /* A is product->B */
73349566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7335ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
73369566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
73379566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73389566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73399566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73409566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73419566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73424e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73439566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73449566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73459566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73464e84afc0SStefano Zampini       rmapt[cp] = 2;
73474e84afc0SStefano Zampini       rmapa[cp] = globidx;
73484e84afc0SStefano Zampini       cmapt[cp] = 2;
73494e84afc0SStefano Zampini       cmapa[cp] = globidx;
73504e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73514e84afc0SStefano Zampini       cp++;
73524e84afc0SStefano Zampini     } else {
73539566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73549566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73559566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73569566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73579566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73589566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73594e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73609566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73619566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73629566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73634e84afc0SStefano Zampini       rmapt[cp] = 1;
73644e84afc0SStefano Zampini       cmapt[cp] = 2;
73654e84afc0SStefano Zampini       cmapa[cp] = globidx;
73664e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73674e84afc0SStefano Zampini       cp++;
73689566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73699566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73709566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73719566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73729566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73739566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73744e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73759566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73769566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73774e84afc0SStefano Zampini       rmapt[cp] = 2;
73784e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73794e84afc0SStefano Zampini       cmapt[cp] = 2;
73804e84afc0SStefano Zampini       cmapa[cp] = globidx;
73814e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73824e84afc0SStefano Zampini       cp++;
73834e84afc0SStefano Zampini     }
73844e84afc0SStefano Zampini     break;
73854e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73869566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73874e84afc0SStefano Zampini     /* P is product->B */
73889566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73899566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73909566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73919566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73929566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73939566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73949566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73954e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73969566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73979566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73989566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73994e84afc0SStefano Zampini     rmapt[cp] = 2;
74004e84afc0SStefano Zampini     rmapa[cp] = globidx;
74014e84afc0SStefano Zampini     cmapt[cp] = 2;
74024e84afc0SStefano Zampini     cmapa[cp] = globidx;
74034e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
74044e84afc0SStefano Zampini     cp++;
74054e84afc0SStefano Zampini     if (mmdata->P_oth) {
74069566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
74079566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7408f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
74099566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
74109566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
74119566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
74129566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74139566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74149566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74159566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74164e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74179566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74189566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74194e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
74204e84afc0SStefano Zampini       cp++;
74219566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
74229566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
74239566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74249566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74259566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74269566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74274e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74289566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74299566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74304e84afc0SStefano Zampini       rmapt[cp] = 2;
74314e84afc0SStefano Zampini       rmapa[cp] = globidx;
74324e84afc0SStefano Zampini       cmapt[cp] = 2;
74334e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
74344e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74354e84afc0SStefano Zampini       cp++;
74364e84afc0SStefano Zampini     }
74374e84afc0SStefano Zampini     break;
7438d71ae5a4SJacob Faibussowitsch   default:
7439d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
74404e84afc0SStefano Zampini   }
74414e84afc0SStefano Zampini   /* sanity check */
74429371c9d4SSatish Balay   if (size > 1)
74439371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
74444e84afc0SStefano Zampini 
74459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7446ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7447ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7448ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7449ddea5d60SJunchao Zhang   }
74504e84afc0SStefano Zampini   mmdata->cp             = cp;
74514e84afc0SStefano Zampini   C->product->data       = mmdata;
74524e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74534e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74544e84afc0SStefano Zampini 
7455c215019aSStefano Zampini   /* memory type */
7456c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74579566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7458d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74599566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7460c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7461d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74623214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7463c215019aSStefano Zampini 
74644e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7465ddea5d60SJunchao Zhang 
7466ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7467ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7468ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7469ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7470ddea5d60SJunchao Zhang   */
74714e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74724e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74734e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7474ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74754e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74764e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74774e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74784e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74794e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74804e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74814e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74824e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7483ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7484ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74854e84afc0SStefano Zampini       }
74864e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74874e84afc0SStefano Zampini   }
7488ddea5d60SJunchao Zhang 
7489ddea5d60SJunchao Zhang   /*
7490ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7491ddea5d60SJunchao Zhang 
7492ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7493ddea5d60SJunchao Zhang 
7494d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7495ddea5d60SJunchao Zhang 
7496ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7497ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7498ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7499ddea5d60SJunchao Zhang 
7500ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7501da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7502ddea5d60SJunchao Zhang   */
75039566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
75049566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7505ddea5d60SJunchao Zhang 
7506ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7507ddea5d60SJunchao Zhang   if (hasoffproc) {
75084e84afc0SStefano Zampini     PetscSF  msf;
75094e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
75104e84afc0SStefano Zampini 
75119566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
75129566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
75139566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7514ddea5d60SJunchao Zhang 
75154e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
75164e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
75174e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
75184e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7519ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
75204e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
75214e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
75224e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
75234e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
75244e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
75254e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
75264e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
75274e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
75284e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
75294e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
75304e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
75314e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
75324e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7533ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
75344e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
75354e84afc0SStefano Zampini               *coi++    = gr;
75364e84afc0SStefano Zampini               *idxoff++ = j;
75374e84afc0SStefano Zampini             }
75384e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
75394e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
75404e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75414e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
75424e84afc0SStefano Zampini             } else { /* offdiag */
75434e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75444e84afc0SStefano Zampini             }
75454e84afc0SStefano Zampini             ncoo_o += nz;
7546ddea5d60SJunchao Zhang           } else { /* this is a local row */
75474e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
75484e84afc0SStefano Zampini           }
75494e84afc0SStefano Zampini         }
75504e84afc0SStefano Zampini       }
75514e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75524e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75534e84afc0SStefano Zampini     }
75544e84afc0SStefano Zampini 
75559566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75566497c311SBarry Smith     PetscInt incoo_o;
75576497c311SBarry Smith     PetscCall(PetscIntCast(ncoo_o, &incoo_o));
75586497c311SBarry Smith     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75599566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75609566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75614e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75629566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75639566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75649566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75659566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75669566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75679566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7568ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75699566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75704e84afc0SStefano Zampini     coo_i = coo_i2;
75714e84afc0SStefano Zampini     coo_j = coo_j2;
75724e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75734e84afc0SStefano Zampini     ncoo = ncoo_d;
75749566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7575c215019aSStefano Zampini 
75769566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75779566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75789566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75794e84afc0SStefano Zampini   }
7580c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75814e84afc0SStefano Zampini 
7582ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75834e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75844e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75854e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75864e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75874e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75884e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75894e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75904e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75914e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75924e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75934e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75944e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75954e84afc0SStefano Zampini 
75964e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7597ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7598ddea5d60SJunchao Zhang       /* fill coo_i */
75994e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76004e84afc0SStefano Zampini         const PetscInt gr = i + rs;
76014e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
76024e84afc0SStefano Zampini       }
7603ddea5d60SJunchao Zhang       /* fill coo_j */
7604ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
76059566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7606ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7607ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7608ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
76094e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
76104e84afc0SStefano Zampini       }
76114e84afc0SStefano Zampini       ncoo_d += mm->nz;
7612ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
76134e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76144e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
76154e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
76164e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7617ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
76184e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7619ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
76204e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
76214e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
76224e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7623ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
76244e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
76254e84afc0SStefano Zampini           }
76264e84afc0SStefano Zampini           ncoo_d += nz;
76274e84afc0SStefano Zampini         }
76284e84afc0SStefano Zampini       }
76294e84afc0SStefano Zampini     }
76304e84afc0SStefano Zampini   }
763148a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
76329566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
763348a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
76349566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7635ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
76369566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
76374e84afc0SStefano Zampini 
76384e84afc0SStefano Zampini   /* preallocate with COO data */
76399566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76409566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76424e84afc0SStefano Zampini }
76434e84afc0SStefano Zampini 
7644d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7645d71ae5a4SJacob Faibussowitsch {
76464e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76474e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76484e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7649abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76504e84afc0SStefano Zampini #else
76514e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76524e84afc0SStefano Zampini #endif
76534e84afc0SStefano Zampini 
76544e84afc0SStefano Zampini   PetscFunctionBegin;
76554e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76564e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
765748a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
765865e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7659abb89eb1SStefano Zampini     switch (product->type) {
7660abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7661abb89eb1SStefano Zampini       if (product->api_user) {
7662d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76639566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7664d0609cedSBarry Smith         PetscOptionsEnd();
7665abb89eb1SStefano Zampini       } else {
7666d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76679566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7668d0609cedSBarry Smith         PetscOptionsEnd();
7669abb89eb1SStefano Zampini       }
7670abb89eb1SStefano Zampini       break;
7671abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7672abb89eb1SStefano Zampini       if (product->api_user) {
7673d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76749566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7675d0609cedSBarry Smith         PetscOptionsEnd();
7676abb89eb1SStefano Zampini       } else {
7677d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76789566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7679d0609cedSBarry Smith         PetscOptionsEnd();
7680abb89eb1SStefano Zampini       }
7681abb89eb1SStefano Zampini       break;
7682abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7683abb89eb1SStefano Zampini       if (product->api_user) {
7684d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76859566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7686d0609cedSBarry Smith         PetscOptionsEnd();
7687abb89eb1SStefano Zampini       } else {
7688d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76899566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7690d0609cedSBarry Smith         PetscOptionsEnd();
7691abb89eb1SStefano Zampini       }
7692abb89eb1SStefano Zampini       break;
7693d71ae5a4SJacob Faibussowitsch     default:
7694d71ae5a4SJacob Faibussowitsch       break;
7695abb89eb1SStefano Zampini     }
7696abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7697abb89eb1SStefano Zampini   }
76984e84afc0SStefano Zampini #endif
76994e84afc0SStefano Zampini   if (match) {
77004e84afc0SStefano Zampini     switch (product->type) {
77014e84afc0SStefano Zampini     case MATPRODUCT_AB:
77024e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7703d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7704d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7705d71ae5a4SJacob Faibussowitsch       break;
7706d71ae5a4SJacob Faibussowitsch     default:
7707d71ae5a4SJacob Faibussowitsch       break;
77084e84afc0SStefano Zampini     }
77094e84afc0SStefano Zampini   }
77104e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
77119566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
77123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771381824310SBarry Smith }
771498921bdaSJacob Faibussowitsch 
771598921bdaSJacob Faibussowitsch /*
771672833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
771772833a62Smarkadams4 
771872833a62Smarkadams4    n - the number of block indices in cc[]
771972833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
772072833a62Smarkadams4 */
7721d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7722d71ae5a4SJacob Faibussowitsch {
772372833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
772472833a62Smarkadams4   const PetscInt *idx;
772572833a62Smarkadams4 
772672833a62Smarkadams4   PetscFunctionBegin;
772772833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
772872833a62Smarkadams4   if (nidx) {
772972833a62Smarkadams4     cnt     = 0;
773072833a62Smarkadams4     cc[cnt] = idx[0] / bs;
773172833a62Smarkadams4     for (j = 1; j < nidx; j++) {
773272833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
773372833a62Smarkadams4     }
773472833a62Smarkadams4   }
773572833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
773672833a62Smarkadams4   *n = cnt + 1;
77373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
773872833a62Smarkadams4 }
773972833a62Smarkadams4 
774072833a62Smarkadams4 /*
774172833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
774272833a62Smarkadams4 
774372833a62Smarkadams4     ncollapsed - the number of block indices
774472833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
774572833a62Smarkadams4 */
7746d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7747d71ae5a4SJacob Faibussowitsch {
774872833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
774972833a62Smarkadams4 
775072833a62Smarkadams4   PetscFunctionBegin;
775172833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
775272833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
775372833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
775472833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77559371c9d4SSatish Balay     cprevtmp = cprev;
77569371c9d4SSatish Balay     cprev    = merged;
77579371c9d4SSatish Balay     merged   = cprevtmp;
775872833a62Smarkadams4   }
775972833a62Smarkadams4   *ncollapsed = nprev;
776072833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
776272833a62Smarkadams4 }
776372833a62Smarkadams4 
77642d776b49SBarry Smith /*
776572833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
776672833a62Smarkadams4 
776772833a62Smarkadams4  Input Parameter:
776872833a62Smarkadams4  . Amat - matrix
776972833a62Smarkadams4  - symmetrize - make the result symmetric
777072833a62Smarkadams4  + scale - scale with diagonal
777172833a62Smarkadams4 
777272833a62Smarkadams4  Output Parameter:
777372833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
777472833a62Smarkadams4 
777572833a62Smarkadams4 */
7776e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7777d71ae5a4SJacob Faibussowitsch {
777872833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
777972833a62Smarkadams4   MPI_Comm  comm;
778072833a62Smarkadams4   Mat       Gmat;
778172833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
778272833a62Smarkadams4   Mat       a, b, c;
778372833a62Smarkadams4   MatType   jtype;
778472833a62Smarkadams4 
778572833a62Smarkadams4   PetscFunctionBegin;
778672833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
778772833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
778872833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
778972833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
779072833a62Smarkadams4   nloc = (Iend - Istart) / bs;
779172833a62Smarkadams4 
779272833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
779372833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
779472833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
779572833a62Smarkadams4 
779672833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
779772833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
779872833a62Smarkadams4      implementation */
779972833a62Smarkadams4   if (bs > 1) {
780072833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
780172833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
780272833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
780372833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
780472833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
780572833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
780672833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
78072cf69117Smarkadams4       MatScalar *aa, val, *AA;
78082cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
78096497c311SBarry Smith 
78109371c9d4SSatish Balay       if (isseqaij) {
78119371c9d4SSatish Balay         a = Amat;
78129371c9d4SSatish Balay         b = NULL;
78139371c9d4SSatish Balay       } else {
781472833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
78159371c9d4SSatish Balay         a             = d->A;
78169371c9d4SSatish Balay         b             = d->B;
781772833a62Smarkadams4       }
781872833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
781972833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
782072833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
78212cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
782259ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
78236497c311SBarry Smith 
782459ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
782559ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
782659ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
782759ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
782872833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
782959ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
783059ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
783159ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
783259ee9f9fSPierre Jolivet             else {
783359ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
783459ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
783559ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
783672833a62Smarkadams4               }
783759ee9f9fSPierre Jolivet             }
783859ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
783959ee9f9fSPierre Jolivet           }
784059ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
784172833a62Smarkadams4           if (!ok) {
784272833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
784359ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
784472833a62Smarkadams4             goto old_bs;
784572833a62Smarkadams4           }
784672833a62Smarkadams4         }
784772833a62Smarkadams4       }
784872833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
784972833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
785072833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78512cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
785272833a62Smarkadams4       // diag
785372833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
785472833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
78556497c311SBarry Smith 
785672833a62Smarkadams4         ai = aseq->i;
785772833a62Smarkadams4         n  = ai[brow + 1] - ai[brow];
785872833a62Smarkadams4         aj = aseq->j + ai[brow];
78596497c311SBarry Smith         for (PetscInt k = 0; k < n; k += bs) {   // block columns
786072833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
786172833a62Smarkadams4           val        = 0;
7862e02fb3cdSMark Adams           if (index_size == 0) {
78636497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
786472833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
78656497c311SBarry Smith               for (PetscInt jj = 0; jj < bs; jj++) {    // columns in block
786672833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
786772833a62Smarkadams4               }
786872833a62Smarkadams4             }
7869e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78706497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78716497c311SBarry Smith               PetscInt ii = index[iii];
7872e02fb3cdSMark Adams               aa          = aseq->a + ai[brow + ii] + k;
78736497c311SBarry Smith               for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block
78746497c311SBarry Smith                 PetscInt jj = index[jjj];
7875cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7876e02fb3cdSMark Adams               }
7877e02fb3cdSMark Adams             }
7878e02fb3cdSMark Adams           }
787959ee9f9fSPierre Jolivet           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
788072833a62Smarkadams4           AA[k / bs] = val;
788172833a62Smarkadams4         }
788272833a62Smarkadams4         grow = Istart / bs + brow / bs;
788366521e1fSMark Adams         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES));
788472833a62Smarkadams4       }
788572833a62Smarkadams4       // off-diag
788672833a62Smarkadams4       if (ismpiaij) {
788772833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
788872833a62Smarkadams4         const PetscScalar *vals;
788972833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
78906497c311SBarry Smith 
789172833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
789272833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
789372833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
78946497c311SBarry Smith           for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
789559ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
789672833a62Smarkadams4             AA[k / bs] = 0;
789772833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
789872833a62Smarkadams4           }
789972833a62Smarkadams4           nc = ncols / bs;
790072833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7901e02fb3cdSMark Adams           if (index_size == 0) {
79026497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
790372833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
79046497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
79056497c311SBarry Smith                 for (PetscInt jj = 0; jj < bs; jj++) { // cols in block
790659ee9f9fSPierre Jolivet                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
790772833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
790872833a62Smarkadams4                 }
790972833a62Smarkadams4               }
791072833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
791172833a62Smarkadams4             }
7912e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
79136497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
79146497c311SBarry Smith               PetscInt ii = index[iii];
7915e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
79166497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
79176497c311SBarry Smith                 for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block
79186497c311SBarry Smith                   PetscInt jj = index[jjj];
7919e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7920e02fb3cdSMark Adams                 }
7921e02fb3cdSMark Adams               }
7922e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7923e02fb3cdSMark Adams             }
7924e02fb3cdSMark Adams           }
792572833a62Smarkadams4           grow = Istart / bs + brow / bs;
792666521e1fSMark Adams           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES));
792772833a62Smarkadams4         }
792872833a62Smarkadams4       }
792972833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
793072833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79312cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
793272833a62Smarkadams4     } else {
793372833a62Smarkadams4       const PetscScalar *vals;
793472833a62Smarkadams4       const PetscInt    *idx;
793572833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
793672833a62Smarkadams4     old_bs:
793772833a62Smarkadams4       /*
793872833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
793972833a62Smarkadams4        */
794072833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
794172833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
794272833a62Smarkadams4       if (isseqaij) {
794372833a62Smarkadams4         PetscInt max_d_nnz;
79446497c311SBarry Smith 
794572833a62Smarkadams4         /*
794672833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
794772833a62Smarkadams4          */
794872833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
794972833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
795072833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
795148a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
795272833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
795372833a62Smarkadams4       } else if (ismpiaij) {
795472833a62Smarkadams4         Mat             Daij, Oaij;
795572833a62Smarkadams4         const PetscInt *garray;
795672833a62Smarkadams4         PetscInt        max_d_nnz;
79576497c311SBarry Smith 
795872833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
795972833a62Smarkadams4         /*
796072833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
796172833a62Smarkadams4          */
796272833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
796372833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
796472833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
796548a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
796672833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
796772833a62Smarkadams4         /*
796872833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
796972833a62Smarkadams4          */
797072833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
797172833a62Smarkadams4           o_nnz[jj] = 0;
797272833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
797372833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
797472833a62Smarkadams4             o_nnz[jj] += ncols;
797572833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
797672833a62Smarkadams4           }
797772833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
797872833a62Smarkadams4         }
797972833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
798072833a62Smarkadams4       /* get scalar copy (norms) of matrix */
798172833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
798272833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
798372833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
798472833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
798572833a62Smarkadams4         PetscInt dest_row = Ii / bs;
79866497c311SBarry Smith 
798772833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
798872833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
798972833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
799072833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
79916497c311SBarry Smith 
799272833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
799372833a62Smarkadams4         }
799472833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
799572833a62Smarkadams4       }
799672833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
799772833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
799872833a62Smarkadams4     }
799972833a62Smarkadams4   } else {
80002d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
80012d776b49SBarry Smith     else {
80022d776b49SBarry Smith       Gmat = Amat;
80032d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
80042d776b49SBarry Smith     }
80059371c9d4SSatish Balay     if (isseqaij) {
80069371c9d4SSatish Balay       a = Gmat;
80079371c9d4SSatish Balay       b = NULL;
80089371c9d4SSatish Balay     } else {
800972833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
80109371c9d4SSatish Balay       a             = d->A;
80119371c9d4SSatish Balay       b             = d->B;
801272833a62Smarkadams4     }
80132d776b49SBarry Smith     if (filter >= 0 || scale) {
80142d776b49SBarry Smith       /* take absolute value of each entry */
801572833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
801672833a62Smarkadams4         MatInfo      info;
801772833a62Smarkadams4         PetscScalar *avals;
80186497c311SBarry Smith 
801972833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
802072833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
802172833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
802272833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
802372833a62Smarkadams4       }
802472833a62Smarkadams4     }
80252d776b49SBarry Smith   }
802672833a62Smarkadams4   if (symmetrize) {
8027b94d7dedSBarry Smith     PetscBool isset, issym;
80286497c311SBarry Smith 
8029b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8030b94d7dedSBarry Smith     if (!isset || !issym) {
803172833a62Smarkadams4       Mat matTrans;
80326497c311SBarry Smith 
803372833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80341fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
803572833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
803672833a62Smarkadams4     }
803772833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80382d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
803972833a62Smarkadams4   if (scale) {
804072833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
804172833a62Smarkadams4     Vec diag;
80426497c311SBarry Smith 
804372833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
804472833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
804572833a62Smarkadams4     PetscCall(VecReciprocal(diag));
804672833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
804772833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
804872833a62Smarkadams4     PetscCall(VecDestroy(&diag));
804972833a62Smarkadams4   }
805072833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80512d776b49SBarry Smith   if (filter >= 0) {
80522ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80532ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80542d776b49SBarry Smith   }
805572833a62Smarkadams4   *a_Gmat = Gmat;
80563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
805772833a62Smarkadams4 }
805872833a62Smarkadams4 
805972833a62Smarkadams4 /*
806098921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
806198921bdaSJacob Faibussowitsch */
806298921bdaSJacob Faibussowitsch 
806398921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80649566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80659566063dSJacob Faibussowitsch #undef PetscCall
80669371c9d4SSatish Balay #define PetscCall(...) \
80679371c9d4SSatish Balay   do { \
80685f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
806998921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
807098921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
807198921bdaSJacob Faibussowitsch       return; \
807298921bdaSJacob Faibussowitsch     } \
807398921bdaSJacob Faibussowitsch   } while (0)
807498921bdaSJacob Faibussowitsch 
807598921bdaSJacob Faibussowitsch #undef SETERRQ
80769371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80779371c9d4SSatish Balay   do { \
807898921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
807998921bdaSJacob Faibussowitsch     return; \
808098921bdaSJacob Faibussowitsch   } while (0)
808198921bdaSJacob Faibussowitsch 
808298921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
808398921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
808498921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
808598921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
808698921bdaSJacob Faibussowitsch #else
808798921bdaSJacob Faibussowitsch #endif
8088d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8089d71ae5a4SJacob Faibussowitsch {
809098921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
809198921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
809298921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
809398921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
809498921bdaSJacob Faibussowitsch   PetscScalar value;
809598921bdaSJacob Faibussowitsch 
809698921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
809798921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80985f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
809998921bdaSJacob Faibussowitsch   {
810098921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
810198921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
810298921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
810398921bdaSJacob Faibussowitsch 
810498921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
810598921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
810698921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
810798921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
810898921bdaSJacob Faibussowitsch     MatScalar  *aa;
8109f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
811098921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
811198921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
811298921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
811398921bdaSJacob Faibussowitsch     MatScalar  *ba;
811498921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
811598921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
811698921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
811798921bdaSJacob Faibussowitsch 
811898921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
811998921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
812098921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
812198921bdaSJacob Faibussowitsch 
812298921bdaSJacob Faibussowitsch     PetscFunctionBegin;
81239566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
81249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
812598921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
812698921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81276bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
812898921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
812998921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
813098921bdaSJacob Faibussowitsch         lastcol1 = -1;
813198921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
813298921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
813398921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
813498921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
813598921bdaSJacob Faibussowitsch         low1     = 0;
813698921bdaSJacob Faibussowitsch         high1    = nrow1;
813798921bdaSJacob Faibussowitsch         lastcol2 = -1;
813898921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
813998921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
814098921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
814198921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
814298921bdaSJacob Faibussowitsch         low2     = 0;
814398921bdaSJacob Faibussowitsch         high2    = nrow2;
814498921bdaSJacob Faibussowitsch 
814598921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
814698921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
814798921bdaSJacob Faibussowitsch           else value = v[i + j * m];
814898921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
814998921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
815098921bdaSJacob Faibussowitsch             col = in[j] - cstart;
815198921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
815298921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
815398921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
815463a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
815598921bdaSJacob Faibussowitsch           } else {
815698921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
815748a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
815898921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8159eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
816098921bdaSJacob Faibussowitsch               col--;
816198921bdaSJacob Faibussowitsch #else
816298921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
816398921bdaSJacob Faibussowitsch #endif
8164f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
81659566063dSJacob Faibussowitsch                 PetscCall(MatDisAssemble_MPIAIJ(mat));
816698921bdaSJacob Faibussowitsch                 col = in[j];
816798921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
816898921bdaSJacob Faibussowitsch                 B        = aij->B;
816998921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81709371c9d4SSatish Balay                 bimax    = b->imax;
81719371c9d4SSatish Balay                 bi       = b->i;
81729371c9d4SSatish Balay                 bilen    = b->ilen;
81739371c9d4SSatish Balay                 bj       = b->j;
817498921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
817598921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
817698921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
817798921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
817898921bdaSJacob Faibussowitsch                 low2     = 0;
817998921bdaSJacob Faibussowitsch                 high2    = nrow2;
818098921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
818198921bdaSJacob Faibussowitsch                 ba       = b->a;
818298921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
818398921bdaSJacob Faibussowitsch               }
818498921bdaSJacob Faibussowitsch             } else col = in[j];
818598921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
818698921bdaSJacob Faibussowitsch           }
818798921bdaSJacob Faibussowitsch         }
818898921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
818998921bdaSJacob Faibussowitsch         if (roworiented) {
81909566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
819198921bdaSJacob Faibussowitsch         } else {
81929566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
819398921bdaSJacob Faibussowitsch         }
819498921bdaSJacob Faibussowitsch       }
819598921bdaSJacob Faibussowitsch     }
81969566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81979566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
819898921bdaSJacob Faibussowitsch   }
819998921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
820098921bdaSJacob Faibussowitsch }
820172833a62Smarkadams4 
820298921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
820398921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
820498921bdaSJacob Faibussowitsch  * original definitions */
82059566063dSJacob Faibussowitsch #undef PetscCall
820698921bdaSJacob Faibussowitsch #undef SETERRQ
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