xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 4c17f1ccc7b2164a69cf463ab430260cd6f52f71)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
1026cec326SBarry Smith {
1126cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1226cec326SBarry Smith 
1326cec326SBarry Smith   PetscFunctionBegin;
1426cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1526cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1626cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
1726cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
1826cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2026cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2126cec326SBarry Smith #else
2226cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
2326cec326SBarry Smith #endif
2426cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
2526cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
2626cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
2726cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
2826cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
2926cec326SBarry Smith 
3026cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3126cec326SBarry Smith 
3226cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
3326cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
3426cec326SBarry Smith 
3526cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
4126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
4326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
4726cec326SBarry Smith #endif
4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
4926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
5026cec326SBarry Smith #endif
5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
5226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
5326cec326SBarry Smith #endif
5426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
5726cec326SBarry Smith #endif
5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
6026cec326SBarry Smith #endif
6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
6226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
6326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
6426cec326SBarry Smith #endif
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
6926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
7326cec326SBarry Smith #endif
7426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
7626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
7726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
7926cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
8026cec326SBarry Smith }
8126cec326SBarry Smith 
8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
8326cec326SBarry Smith #define TYPE AIJ
8426cec326SBarry Smith #define TYPE_AIJ
8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
8626cec326SBarry Smith #undef TYPE
8726cec326SBarry Smith #undef TYPE_AIJ
8826cec326SBarry Smith 
89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
90d71ae5a4SJacob Faibussowitsch {
918a9c020eSBarry Smith   Mat B;
928a9c020eSBarry Smith 
938a9c020eSBarry Smith   PetscFunctionBegin;
948a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
958a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
968a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
97501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
998a9c020eSBarry Smith }
1008a9c020eSBarry Smith 
101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
102d71ae5a4SJacob Faibussowitsch {
1038a9c020eSBarry Smith   Mat B;
1048a9c020eSBarry Smith 
1058a9c020eSBarry Smith   PetscFunctionBegin;
1068a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1078a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
108501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1108a9c020eSBarry Smith }
1118a9c020eSBarry Smith 
11201bebe75SBarry Smith /*MC
11301bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
11401bebe75SBarry Smith 
11511a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
11611a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
11711a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
11801bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
11901bebe75SBarry Smith   the above preallocation routines for simplicity.
12001bebe75SBarry Smith 
12127430b45SBarry Smith    Options Database Key:
12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
12301bebe75SBarry Smith 
12411a5261eSBarry Smith   Developer Note:
1252ef1f0ffSBarry Smith   Level: beginner
1262ef1f0ffSBarry Smith 
12711a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
12801bebe75SBarry Smith    enough exist.
12901bebe75SBarry Smith 
1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
13101bebe75SBarry Smith M*/
13201bebe75SBarry Smith 
13301bebe75SBarry Smith /*MC
13401bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
13501bebe75SBarry Smith 
13611a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
13711a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
13811a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
13901bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14001bebe75SBarry Smith   the above preallocation routines for simplicity.
14101bebe75SBarry Smith 
14227430b45SBarry Smith    Options Database Key:
14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
14401bebe75SBarry Smith 
14501bebe75SBarry Smith   Level: beginner
14601bebe75SBarry Smith 
1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
14801bebe75SBarry Smith M*/
14901bebe75SBarry Smith 
150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
151d71ae5a4SJacob Faibussowitsch {
152f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
153f74ef234SStefano Zampini 
154f74ef234SStefano Zampini   PetscFunctionBegin;
155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
156b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
157f74ef234SStefano Zampini #endif
1581baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1591baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1603120d049SRichard Tran Mills 
1613120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1623120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1633120d049SRichard Tran Mills    * to differ from the parent matrix. */
1641baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1651baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1663120d049SRichard Tran Mills 
1673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
168f74ef234SStefano Zampini }
169f74ef234SStefano Zampini 
170ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
171d71ae5a4SJacob Faibussowitsch {
17226bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
17326bda2c4Sstefano_zampini 
17426bda2c4Sstefano_zampini   PetscFunctionBegin;
17546533700Sstefano_zampini   if (mat->A) {
1769566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1779566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
17846533700Sstefano_zampini   }
1793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18026bda2c4Sstefano_zampini }
18126bda2c4Sstefano_zampini 
182ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
183d71ae5a4SJacob Faibussowitsch {
18427d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
18527d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
18627d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
18727d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
188ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
18927d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
19027d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
19127d4218bSShri Abhyankar 
19227d4218bSShri Abhyankar   PetscFunctionBegin;
193f4259b30SLisandro Dalcin   *keptrows = NULL;
194ce496241SStefano Zampini 
19527d4218bSShri Abhyankar   ia = a->i;
19627d4218bSShri Abhyankar   ib = b->i;
1979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
1989566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
19927d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
20027d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
20127d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
20227d4218bSShri Abhyankar     if (!na && !nb) {
20327d4218bSShri Abhyankar       cnt++;
20427d4218bSShri Abhyankar       goto ok1;
20527d4218bSShri Abhyankar     }
206ce496241SStefano Zampini     aa = aav + ia[i];
20727d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
20827d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
20927d4218bSShri Abhyankar     }
210720a2405SPierre Jolivet     bb = bav ? bav + ib[i] : NULL;
21127d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
21227d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
21327d4218bSShri Abhyankar     }
21427d4218bSShri Abhyankar     cnt++;
21527d4218bSShri Abhyankar   ok1:;
21627d4218bSShri Abhyankar   }
2171c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
218ce496241SStefano Zampini   if (!n0rows) {
2199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2213ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
222ce496241SStefano Zampini   }
2239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
22427d4218bSShri Abhyankar   cnt = 0;
22527d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22627d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22727d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22827d4218bSShri Abhyankar     if (!na && !nb) continue;
229ce496241SStefano Zampini     aa = aav + ia[i];
23027d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
23127d4218bSShri Abhyankar       if (aa[j] != 0.0) {
23227d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23327d4218bSShri Abhyankar         goto ok2;
23427d4218bSShri Abhyankar       }
23527d4218bSShri Abhyankar     }
236720a2405SPierre Jolivet     bb = bav ? bav + ib[i] : NULL;
23727d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23827d4218bSShri Abhyankar       if (bb[j] != 0.0) {
23927d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
24027d4218bSShri Abhyankar         goto ok2;
24127d4218bSShri Abhyankar       }
24227d4218bSShri Abhyankar     }
24327d4218bSShri Abhyankar   ok2:;
24427d4218bSShri Abhyankar   }
2459566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2469566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2479566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24927d4218bSShri Abhyankar }
25027d4218bSShri Abhyankar 
251ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
252d71ae5a4SJacob Faibussowitsch {
25399e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
25494342113SStefano Zampini   PetscBool   cong;
25599e65526SBarry Smith 
25699e65526SBarry Smith   PetscFunctionBegin;
2579566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
25894342113SStefano Zampini   if (Y->assembled && cong) {
2599566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
26099e65526SBarry Smith   } else {
2619566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
26299e65526SBarry Smith   }
2633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26499e65526SBarry Smith }
26599e65526SBarry Smith 
266ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
267d71ae5a4SJacob Faibussowitsch {
268f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
269f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
270f1f41ecbSJed Brown 
271f1f41ecbSJed Brown   PetscFunctionBegin;
2720298fd71SBarry Smith   *zrows = NULL;
2739566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2749566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
275f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2769566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
278f1f41ecbSJed Brown }
279f1f41ecbSJed Brown 
280ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
281d71ae5a4SJacob Faibussowitsch {
2820716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
283a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
2840716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
2850716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
2860716a85fSBarry Smith   PetscReal         *work;
287ce496241SStefano Zampini   const PetscScalar *dummy;
2880716a85fSBarry Smith 
2890716a85fSBarry Smith   PetscFunctionBegin;
2909566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
2919566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
2929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
2939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
2949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
2959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
296857cbf51SRichard Tran Mills   if (type == NORM_2) {
297ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
298ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
299857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
300ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
301ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
302857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
303ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
304ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
305857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
306ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
307ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
308857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
309ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
310ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
311857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
312857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
3131c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3140716a85fSBarry Smith   } else {
3151c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3160716a85fSBarry Smith   }
3179566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
318857cbf51SRichard Tran Mills   if (type == NORM_2) {
319a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
320857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
321a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3220716a85fSBarry Smith   }
3233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3240716a85fSBarry Smith }
3250716a85fSBarry Smith 
326ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
327d71ae5a4SJacob Faibussowitsch {
328e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
329e52d2c62SBarry Smith   IS              sis, gis;
330e52d2c62SBarry Smith   const PetscInt *isis, *igis;
331e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
332e52d2c62SBarry Smith 
333e52d2c62SBarry Smith   PetscFunctionBegin;
3349566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3359566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3369566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3379566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3399566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
340e52d2c62SBarry Smith 
3419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3429566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3439566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
344e52d2c62SBarry Smith   n = ngis + nsis;
3459566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3469566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
347e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3489566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
349e52d2c62SBarry Smith 
3509566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3519566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3529566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3539566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
355e52d2c62SBarry Smith }
356e52d2c62SBarry Smith 
357dd6ea824SBarry Smith /*
3580f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3599e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3600f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3610f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
36272fa4726SStefano Zampini has an order N integer array but is fast to access.
3639e25ed09SBarry Smith */
364d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
365d71ae5a4SJacob Faibussowitsch {
36644a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
367d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
368dbb450caSBarry Smith 
3693a40ed3dSBarry Smith   PetscFunctionBegin;
37008401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
371aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
372eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
373c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
374b1fc9764SSatish Balay #else
3759566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
376905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
377b1fc9764SSatish Balay #endif
3783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3799e25ed09SBarry Smith }
3809e25ed09SBarry Smith 
381d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
382a8f51744SPierre Jolivet   do { \
383db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
384db4deed7SKarl Rupp     else high1 = nrow1; \
385fd3458f5SBarry Smith     lastcol1 = col; \
386fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
387fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
388fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
389fd3458f5SBarry Smith       else low1 = t; \
390ba4e3ef2SSatish Balay     } \
391fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
392fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
393fd3458f5SBarry Smith       if (rp1[_i] == col) { \
3940c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
3950c0d7e18SFande Kong           ap1[_i] += value; \
3960c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
3970c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
3989371c9d4SSatish Balay         } else ap1[_i] = value; \
39930770e4dSSatish Balay         goto a_noinsert; \
4000520107fSSatish Balay       } \
4010520107fSSatish Balay     } \
4029371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4039371c9d4SSatish Balay       low1  = 0; \
4049371c9d4SSatish Balay       high1 = nrow1; \
4059371c9d4SSatish Balay       goto a_noinsert; \
4069371c9d4SSatish Balay     } \
4079371c9d4SSatish Balay     if (nonew == 1) { \
4089371c9d4SSatish Balay       low1  = 0; \
4099371c9d4SSatish Balay       high1 = nrow1; \
4109371c9d4SSatish Balay       goto a_noinsert; \
4119371c9d4SSatish Balay     } \
41208401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
413fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4149371c9d4SSatish Balay     N = nrow1++ - 1; \
4159371c9d4SSatish Balay     a->nz++; \
4169371c9d4SSatish Balay     high1++; \
4170520107fSSatish Balay     /* shift up all the later entries in this row */ \
4189566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4199566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
420fd3458f5SBarry Smith     rp1[_i] = col; \
421fd3458f5SBarry Smith     ap1[_i] = value; \
422e56f5c9eSBarry Smith     A->nonzerostate++; \
42330770e4dSSatish Balay   a_noinsert:; \
424fd3458f5SBarry Smith     ailen[row] = nrow1; \
425a8f51744SPierre Jolivet   } while (0)
4260a198c4cSBarry Smith 
427d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
428a8f51744SPierre Jolivet   do { \
429db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
430db4deed7SKarl Rupp     else high2 = nrow2; \
431fd3458f5SBarry Smith     lastcol2 = col; \
432fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
433fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
434fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
435fd3458f5SBarry Smith       else low2 = t; \
436ba4e3ef2SSatish Balay     } \
437fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
438fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
439fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4400c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4410c0d7e18SFande Kong           ap2[_i] += value; \
4420c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4439371c9d4SSatish Balay         } else ap2[_i] = value; \
44430770e4dSSatish Balay         goto b_noinsert; \
44530770e4dSSatish Balay       } \
44630770e4dSSatish Balay     } \
4479371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4489371c9d4SSatish Balay       low2  = 0; \
4499371c9d4SSatish Balay       high2 = nrow2; \
4509371c9d4SSatish Balay       goto b_noinsert; \
4519371c9d4SSatish Balay     } \
4529371c9d4SSatish Balay     if (nonew == 1) { \
4539371c9d4SSatish Balay       low2  = 0; \
4549371c9d4SSatish Balay       high2 = nrow2; \
4559371c9d4SSatish Balay       goto b_noinsert; \
4569371c9d4SSatish Balay     } \
45708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
458fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4599371c9d4SSatish Balay     N = nrow2++ - 1; \
4609371c9d4SSatish Balay     b->nz++; \
4619371c9d4SSatish Balay     high2++; \
46230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4639566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4649566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
465fd3458f5SBarry Smith     rp2[_i] = col; \
466fd3458f5SBarry Smith     ap2[_i] = value; \
467e56f5c9eSBarry Smith     B->nonzerostate++; \
46830770e4dSSatish Balay   b_noinsert:; \
469fd3458f5SBarry Smith     bilen[row] = nrow2; \
470a8f51744SPierre Jolivet   } while (0)
47130770e4dSSatish Balay 
472ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
473d71ae5a4SJacob Faibussowitsch {
4742fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4752fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4762fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
477fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4782fd7e33dSBarry Smith 
4792fd7e33dSBarry Smith   PetscFunctionBegin;
4802fd7e33dSBarry Smith   /* code only works for square matrices A */
4812fd7e33dSBarry Smith 
4822fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
4839566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
4842fd7e33dSBarry Smith   row = row - diag;
4852fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
4862fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
4872fd7e33dSBarry Smith   }
488fff043a9SJunchao Zhang   if (l) {
4899566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
4909566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
4919566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
492fff043a9SJunchao Zhang   }
4932fd7e33dSBarry Smith 
4942fd7e33dSBarry Smith   /* diagonal part */
495fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
4969566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
4979566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row])));
4989566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
499fff043a9SJunchao Zhang   }
5002fd7e33dSBarry Smith 
5012fd7e33dSBarry Smith   /* right of diagonal part */
502fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5039566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5049566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5059566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
506fff043a9SJunchao Zhang   }
5073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5082fd7e33dSBarry Smith }
5092fd7e33dSBarry Smith 
510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
511d71ae5a4SJacob Faibussowitsch {
51244a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
513071fcb05SBarry Smith   PetscScalar value = 0.0;
514d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
515d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
516ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5178a729477SBarry Smith 
5180520107fSSatish Balay   /* Some Variables required in the macro */
5194ee7247eSSatish Balay   Mat         A     = aij->A;
5204ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
52157809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
522ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
52330770e4dSSatish Balay   Mat         B                 = aij->B;
52430770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
525d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
526ce496241SStefano Zampini   MatScalar  *aa, *ba;
527fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5288d76821aSHong Zhang   PetscInt    nonew;
529a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5304ee7247eSSatish Balay 
5313a40ed3dSBarry Smith   PetscFunctionBegin;
5329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5348a729477SBarry Smith   for (i = 0; i < m; i++) {
5355ef9f2a5SBarry Smith     if (im[i] < 0) continue;
53608401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5374b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5384b0e389bSBarry Smith       row      = im[i] - rstart;
539fd3458f5SBarry Smith       lastcol1 = -1;
540720a2405SPierre Jolivet       rp1      = aj ? aj + ai[row] : NULL;
541720a2405SPierre Jolivet       ap1      = aa ? aa + ai[row] : NULL;
542fd3458f5SBarry Smith       rmax1    = aimax[row];
543fd3458f5SBarry Smith       nrow1    = ailen[row];
544fd3458f5SBarry Smith       low1     = 0;
545fd3458f5SBarry Smith       high1    = nrow1;
546fd3458f5SBarry Smith       lastcol2 = -1;
5475c0db29aSPierre Jolivet       rp2      = bj ? bj + bi[row] : NULL;
5485c0db29aSPierre Jolivet       ap2      = ba ? ba + bi[row] : NULL;
549fd3458f5SBarry Smith       rmax2    = bimax[row];
550d498b1e9SBarry Smith       nrow2    = bilen[row];
551fd3458f5SBarry Smith       low2     = 0;
552fd3458f5SBarry Smith       high2    = nrow2;
553fd3458f5SBarry Smith 
5541eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
555071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
556c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
557fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
558fd3458f5SBarry Smith           col   = in[j] - cstart;
5598d76821aSHong Zhang           nonew = a->nonew;
560d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
561f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
562f7d195e4SLawrence Mitchell           continue;
563f7d195e4SLawrence Mitchell         } else {
564f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
565227d817aSBarry Smith           if (mat->was_assembled) {
56648a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
567aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
568eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
569fa46199cSSatish Balay             col--;
570b1fc9764SSatish Balay #else
571905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
572b1fc9764SSatish Balay #endif
573fff043a9SJunchao Zhang             if (col < 0 && !((Mat_SeqAIJ *)(aij->B->data))->nonew) { /* col < 0 means in[j] is a new col for B */
5749566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIAIJ(mat));                 /* Change aij->B from reduced/local format to expanded/global format */
5754b0e389bSBarry Smith               col = in[j];
5769bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
577f9508a3cSSatish Balay               B     = aij->B;
578f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5799371c9d4SSatish Balay               bimax = b->imax;
5809371c9d4SSatish Balay               bi    = b->i;
5819371c9d4SSatish Balay               bilen = b->ilen;
5829371c9d4SSatish Balay               bj    = b->j;
5839371c9d4SSatish Balay               ba    = b->a;
584d498b1e9SBarry Smith               rp2   = bj + bi[row];
585d498b1e9SBarry Smith               ap2   = ba + bi[row];
586d498b1e9SBarry Smith               rmax2 = bimax[row];
587d498b1e9SBarry Smith               nrow2 = bilen[row];
588d498b1e9SBarry Smith               low2  = 0;
589d498b1e9SBarry Smith               high2 = nrow2;
590d0f46423SBarry Smith               bm    = aij->B->rmap->n;
591f9508a3cSSatish Balay               ba    = b->a;
592d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
5930587a0fcSBarry Smith               if (1 == ((Mat_SeqAIJ *)(aij->B->data))->nonew) {
5949566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
59598921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
5960587a0fcSBarry Smith             }
597c48de900SBarry Smith           } else col = in[j];
5988d76821aSHong Zhang           nonew = b->nonew;
599d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
6001eb62cbbSBarry Smith         }
6011eb62cbbSBarry Smith       }
6025ef9f2a5SBarry Smith     } else {
60328b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
60490f02eecSBarry Smith       if (!aij->donotstash) {
6055080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
606d36fbae8SSatish Balay         if (roworiented) {
6075c0db29aSPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v ? v + i * n : NULL, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
608d36fbae8SSatish Balay         } else {
6095c0db29aSPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v ? v + i : NULL, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6104b0e389bSBarry Smith         }
6111eb62cbbSBarry Smith       }
6128a729477SBarry Smith     }
61390f02eecSBarry Smith   }
6145519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6178a729477SBarry Smith }
6188a729477SBarry Smith 
6192b08fdbeSandi selinger /*
620904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6212b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
622904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6232b08fdbeSandi selinger */
624d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
625d71ae5a4SJacob Faibussowitsch {
626904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
627904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6284cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
629904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
630904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
631904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
632904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
633904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6346dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
635904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
636904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
637904d1e70Sandi selinger 
638904d1e70Sandi selinger   PetscFunctionBegin;
639904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
640904d1e70Sandi selinger   for (j = 0; j < am; j++) {
641904d1e70Sandi selinger     dnz = onz = 0;
642904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6436dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
644904d1e70Sandi selinger       /* If column is in the diagonal */
645904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
646904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
647904d1e70Sandi selinger         dnz++;
648904d1e70Sandi selinger       } else { /* off-diagonal entries */
649904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
650904d1e70Sandi selinger         onz++;
651904d1e70Sandi selinger       }
652904d1e70Sandi selinger     }
653904d1e70Sandi selinger     ailen[j] = dnz;
654904d1e70Sandi selinger     bilen[j] = onz;
655904d1e70Sandi selinger   }
6563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
657904d1e70Sandi selinger }
658904d1e70Sandi selinger 
659904d1e70Sandi selinger /*
660904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
661904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6621de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6631de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6641de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
665904d1e70Sandi selinger */
666d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
667d71ae5a4SJacob Faibussowitsch {
6683a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6693a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6704cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
671e9ede7d0Sandi selinger   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)(aij->A)->data, *aijo = (Mat_SeqAIJ *)(aij->B)->data;
6723a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6733a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6743a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6753a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6763a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6776dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6781de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
679904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
680904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
6813a063d27Sandi selinger 
6823a063d27Sandi selinger   PetscFunctionBegin;
6833a063d27Sandi selinger   /* Iterate over all rows of the matrix */
6843a063d27Sandi selinger   for (j = 0; j < am; j++) {
685904d1e70Sandi selinger     dnz_row = onz_row = 0;
686904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
687904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
688e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
689e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
690ae8e66a0Sandi selinger       /* If column is in the diagonal */
6913a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
692904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
693904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
694904d1e70Sandi selinger         dnz_row++;
695ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
696904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
697904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
698904d1e70Sandi selinger         onz_row++;
6993a063d27Sandi selinger       }
7003a063d27Sandi selinger     }
701904d1e70Sandi selinger     ailen[j] = dnz_row;
702904d1e70Sandi selinger     bilen[j] = onz_row;
7033a063d27Sandi selinger   }
7043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7053a063d27Sandi selinger }
7063a063d27Sandi selinger 
707ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
708d71ae5a4SJacob Faibussowitsch {
709b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
710d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
711d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
712b49de8d1SLois Curfman McInnes 
7133a40ed3dSBarry Smith   PetscFunctionBegin;
714b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
71554c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
71654c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
71785835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
718b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
719b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
72054c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
72154c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
722b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
723b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7249566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
725fa852ad4SSatish Balay       } else {
72648a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
727aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
728eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
729fa46199cSSatish Balay         col--;
730b1fc9764SSatish Balay #else
731905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
732b1fc9764SSatish Balay #endif
733e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
73448a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
735b49de8d1SLois Curfman McInnes       }
736b49de8d1SLois Curfman McInnes     }
737b49de8d1SLois Curfman McInnes   }
7383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
739b49de8d1SLois Curfman McInnes }
740bc5ccf88SSatish Balay 
741ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
742d71ae5a4SJacob Faibussowitsch {
743bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
744b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
745bc5ccf88SSatish Balay 
746bc5ccf88SSatish Balay   PetscFunctionBegin;
7473ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
748bc5ccf88SSatish Balay 
7499566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7509566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7519566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
753bc5ccf88SSatish Balay }
754bc5ccf88SSatish Balay 
755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
756d71ae5a4SJacob Faibussowitsch {
757bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
758b1d57f15SBarry Smith   PetscMPIInt  n;
759b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
760e44c0bd4SBarry Smith   PetscInt    *row, *col;
761ace3abfcSBarry Smith   PetscBool    other_disassembled;
76287828ca2SBarry Smith   PetscScalar *val;
763bc5ccf88SSatish Balay 
76491c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7656e111a19SKarl Rupp 
766bc5ccf88SSatish Balay   PetscFunctionBegin;
7674cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
768a2d1c673SSatish Balay     while (1) {
7699566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
770a2d1c673SSatish Balay       if (!flg) break;
771a2d1c673SSatish Balay 
772bc5ccf88SSatish Balay       for (i = 0; i < n;) {
773bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7742205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7752205254eSKarl Rupp           if (row[j] != rstart) break;
7762205254eSKarl Rupp         }
777bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
778bc5ccf88SSatish Balay         else ncols = n - i;
779bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7809566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
781bc5ccf88SSatish Balay         i = j;
782bc5ccf88SSatish Balay       }
783bc5ccf88SSatish Balay     }
7849566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
785bc5ccf88SSatish Balay   }
7868c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
787c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
7889ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
7899ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
7909566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
7919566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
7929ecce9b1SRichard Tran Mills   }
793e2cf4d64SStefano Zampini #endif
7949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
7959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
796bc5ccf88SSatish Balay 
797bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
798071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
799bc5ccf88SSatish Balay   /*
800bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
801bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
802bc5ccf88SSatish Balay   */
803bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
8045f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
80535cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
8069566063dSJacob Faibussowitsch       PetscCall(MatDisAssemble_MPIAIJ(mat));
807ad59fb31SSatish Balay     }
808ad59fb31SSatish Balay   }
80948a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8109566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8118c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
812c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
813e2cf4d64SStefano Zampini #endif
8149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
816bc5ccf88SSatish Balay 
8179566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8182205254eSKarl Rupp 
819f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
820a30b2313SHong Zhang 
8219566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
822e56f5c9eSBarry Smith 
8234f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
8244f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)(aij->A->data))->nonew) {
825e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
8261c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
827e56f5c9eSBarry Smith   }
8288c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
829c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
830e2cf4d64SStefano Zampini #endif
8313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
832bc5ccf88SSatish Balay }
833bc5ccf88SSatish Balay 
834ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
835d71ae5a4SJacob Faibussowitsch {
83644a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8373a40ed3dSBarry Smith 
8383a40ed3dSBarry Smith   PetscFunctionBegin;
8399566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8409566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8421eb62cbbSBarry Smith }
8431eb62cbbSBarry Smith 
844ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
845d71ae5a4SJacob Faibussowitsch {
8461b1dd7adSMatthew G. Knepley   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)A->data;
847a92ad425SStefano Zampini   PetscObjectState sA, sB;
8481b1dd7adSMatthew G. Knepley   PetscInt        *lrows;
8496e520ac8SStefano Zampini   PetscInt         r, len;
850a92ad425SStefano Zampini   PetscBool        cong, lch, gch;
8511eb62cbbSBarry Smith 
8523a40ed3dSBarry Smith   PetscFunctionBegin;
8536e520ac8SStefano Zampini   /* get locally owned rows */
8549566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8559566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
85697b48c8fSBarry Smith   /* fix right hand side if needed */
85797b48c8fSBarry Smith   if (x && b) {
8581b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8591b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8601b1dd7adSMatthew G. Knepley 
86128b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8629566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8639566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8641b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8659566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8669566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
86797b48c8fSBarry Smith   }
868a92ad425SStefano Zampini 
869a92ad425SStefano Zampini   sA = mat->A->nonzerostate;
870a92ad425SStefano Zampini   sB = mat->B->nonzerostate;
871a92ad425SStefano Zampini 
872a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8739566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8749566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
875a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
876a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
877a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
878a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
879a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
880a92ad425SStefano Zampini 
881a92ad425SStefano Zampini     nnwA = aijA->nonew;
882a92ad425SStefano Zampini     nnwB = aijB->nonew;
883a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
884a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
885a92ad425SStefano Zampini     if (!nnzA) {
8869566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
887a92ad425SStefano Zampini       aijA->nonew = 0;
888a92ad425SStefano Zampini     }
889a92ad425SStefano Zampini     if (!nnzB) {
8909566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
891a92ad425SStefano Zampini       aijB->nonew = 0;
892a92ad425SStefano Zampini     }
893a92ad425SStefano Zampini     /* Must zero here before the next loop */
8949566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
8959566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
8961b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
8971b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
898a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
8999566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
900e2d53e46SBarry Smith     }
901a92ad425SStefano Zampini     aijA->nonew = nnwA;
902a92ad425SStefano Zampini     aijB->nonew = nnwB;
9036eb55b6aSBarry Smith   } else {
9049566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9059566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9066eb55b6aSBarry Smith   }
9079566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9099566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9104f9cfa9eSBarry Smith 
911a92ad425SStefano Zampini   /* reduce nonzerostate */
912a92ad425SStefano Zampini   lch = (PetscBool)(sA != mat->A->nonzerostate || sB != mat->B->nonzerostate);
9131c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lch, &gch, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)A)));
914a92ad425SStefano Zampini   if (gch) A->nonzerostate++;
9153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9161eb62cbbSBarry Smith }
9171eb62cbbSBarry Smith 
918ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
919d71ae5a4SJacob Faibussowitsch {
9209c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9215ba17502SJed Brown   PetscMPIInt        n = A->rmap->n;
922131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
92354bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
924131c27b5Sprj-   PetscMPIInt        p = 0;
92554bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
92654bd4135SMatthew G. Knepley   PetscSF            sf;
9279c7c4993SBarry Smith   const PetscScalar *xx;
928fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
929564f14d6SBarry Smith   Vec                xmask, lmask;
930564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
931564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
932564f14d6SBarry Smith   PetscScalar       *aa;
9339c7c4993SBarry Smith 
9349c7c4993SBarry Smith   PetscFunctionBegin;
93554bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
93754bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9389566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
93954bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
94054bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
941aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9425ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9439566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9445ba17502SJed Brown     }
94554bd4135SMatthew G. Knepley     rrows[r].rank  = p;
94654bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9479c7c4993SBarry Smith   }
9489566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9499566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
95054bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9519566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9529566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9539566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
95454bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9559371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9569371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
957564f14d6SBarry Smith   /* zero diagonal part of matrix */
9589566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9594cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9609566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9619566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9629566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
96354bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9649566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9659566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9669566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9679566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
968a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
969a92ad425SStefano Zampini     PetscBool cong;
970a92ad425SStefano Zampini 
9719566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
97228b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9739566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9749566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9759566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9769566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
977377aa5a1SBarry Smith   }
9789566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9794cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9809566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
981564f14d6SBarry Smith   ii = aij->i;
98248a46eb9SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(aij_a + ii[lrows[i]], ii[lrows[i] + 1] - ii[lrows[i]]));
983564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
984564f14d6SBarry Smith   if (aij->compressedrow.use) {
985564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
986564f14d6SBarry Smith     ii   = aij->compressedrow.i;
987564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
988564f14d6SBarry Smith     for (i = 0; i < m; i++) {
989564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
990564f14d6SBarry Smith       aj = aij->j + ii[i];
991fff043a9SJunchao Zhang       aa = aij_a + ii[i];
992564f14d6SBarry Smith 
993564f14d6SBarry Smith       for (j = 0; j < n; j++) {
99425266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
995377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
996564f14d6SBarry Smith           *aa = 0.0;
997564f14d6SBarry Smith         }
998564f14d6SBarry Smith         aa++;
999564f14d6SBarry Smith         aj++;
1000564f14d6SBarry Smith       }
1001564f14d6SBarry Smith       ridx++;
1002564f14d6SBarry Smith     }
1003564f14d6SBarry Smith   } else { /* do not use compressed row format */
1004564f14d6SBarry Smith     m = l->B->rmap->n;
1005564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1006564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1007564f14d6SBarry Smith       aj = aij->j + ii[i];
1008fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1009564f14d6SBarry Smith       for (j = 0; j < n; j++) {
101025266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1011377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1012564f14d6SBarry Smith           *aa = 0.0;
1013564f14d6SBarry Smith         }
1014564f14d6SBarry Smith         aa++;
1015564f14d6SBarry Smith         aj++;
1016564f14d6SBarry Smith       }
1017564f14d6SBarry Smith     }
1018564f14d6SBarry Smith   }
1019a92ad425SStefano Zampini   if (x && b) {
10209566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10219566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1022377aa5a1SBarry Smith   }
10239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10249566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10259566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10269566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10274f9cfa9eSBarry Smith 
10284f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
10294f9cfa9eSBarry Smith   if (!((Mat_SeqAIJ *)(l->A->data))->keepnonzeropattern) {
10304f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
10311c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10324f9cfa9eSBarry Smith   }
10333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10349c7c4993SBarry Smith }
10359c7c4993SBarry Smith 
1036ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1037d71ae5a4SJacob Faibussowitsch {
1038416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1039b1d57f15SBarry Smith   PetscInt    nt;
104019b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1041416022c9SBarry Smith 
10423a40ed3dSBarry Smith   PetscFunctionBegin;
10439566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
104408401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10459566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1046296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10479566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1048296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10501eb62cbbSBarry Smith }
10511eb62cbbSBarry Smith 
1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1053d71ae5a4SJacob Faibussowitsch {
1054bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1055bd0c2dcbSBarry Smith 
1056bd0c2dcbSBarry Smith   PetscFunctionBegin;
10579566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1059bd0c2dcbSBarry Smith }
1060bd0c2dcbSBarry Smith 
1061ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1062d71ae5a4SJacob Faibussowitsch {
1063416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
106401ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10653a40ed3dSBarry Smith 
10663a40ed3dSBarry Smith   PetscFunctionBegin;
10679566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10689566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10699566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10709566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1072da3a660dSBarry Smith }
1073da3a660dSBarry Smith 
1074ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1075d71ae5a4SJacob Faibussowitsch {
1076416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1077da3a660dSBarry Smith 
10783a40ed3dSBarry Smith   PetscFunctionBegin;
1079da3a660dSBarry Smith   /* do nondiagonal part */
10809566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1081da3a660dSBarry Smith   /* do local part */
10829566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10839613dc34SJunchao Zhang   /* add partial results together */
10849566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10859566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1087da3a660dSBarry Smith }
1088da3a660dSBarry Smith 
1089ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1090d71ae5a4SJacob Faibussowitsch {
10914f423910Svictorle   MPI_Comm    comm;
1092ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1093ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1094cd0d46ebSvictorle   IS          Me, Notme;
1095b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
109654d735aeSStefano Zampini   PetscBool   lf;
1097b1d57f15SBarry Smith   PetscMPIInt size;
1098cd0d46ebSvictorle 
1099cd0d46ebSvictorle   PetscFunctionBegin;
110042e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
11019566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
11021c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
11033ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11049566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11063ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
110742e5f5b4Svictorle 
11087dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11099566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11109566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1112cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1113cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11149566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11159566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11169566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
111766501d38Svictorle   Aoff = Aoffs[0];
11189566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
111966501d38Svictorle   Boff = Boffs[0];
11209566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11219566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11229566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11239566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11249566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11259566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1127cd0d46ebSvictorle }
1128cd0d46ebSvictorle 
1129ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsSymmetric_MPIAIJ(Mat A, PetscReal tol, PetscBool *f)
1130d71ae5a4SJacob Faibussowitsch {
1131a3bbdb47SHong Zhang   PetscFunctionBegin;
11329566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose_MPIAIJ(A, A, tol, f));
11333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1134a3bbdb47SHong Zhang }
1135a3bbdb47SHong Zhang 
1136ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1137d71ae5a4SJacob Faibussowitsch {
1138416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1139da3a660dSBarry Smith 
11403a40ed3dSBarry Smith   PetscFunctionBegin;
1141da3a660dSBarry Smith   /* do nondiagonal part */
11429566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1143da3a660dSBarry Smith   /* do local part */
11449566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11459613dc34SJunchao Zhang   /* add partial results together */
11469566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11479566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1149da3a660dSBarry Smith }
1150da3a660dSBarry Smith 
11511eb62cbbSBarry Smith /*
11521eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11531eb62cbbSBarry Smith    diagonal block
11541eb62cbbSBarry Smith */
1155ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1156d71ae5a4SJacob Faibussowitsch {
1157416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11583a40ed3dSBarry Smith 
11593a40ed3dSBarry Smith   PetscFunctionBegin;
116008401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1161aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11629566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11641eb62cbbSBarry Smith }
11651eb62cbbSBarry Smith 
1166ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1167d71ae5a4SJacob Faibussowitsch {
1168052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11693a40ed3dSBarry Smith 
11703a40ed3dSBarry Smith   PetscFunctionBegin;
11719566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11729566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1174052efed2SBarry Smith }
1175052efed2SBarry Smith 
1176ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1177d71ae5a4SJacob Faibussowitsch {
11788e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11798e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11808e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11813ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11822e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
118317a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
118417a3732bSBarry Smith   PetscInt64         nz, hnz;
11853ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11863ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11873ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
118817a3732bSBarry Smith   PetscMPIInt        rank;
11898e2fed03SBarry Smith 
11908e2fed03SBarry Smith   PetscFunctionBegin;
11919566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
11923ea6fe3dSLisandro Dalcin 
11933ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
11943ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
11953ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
11963ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
11973ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
11988e2fed03SBarry Smith   nz = A->nz + B->nz;
11993ea6fe3dSLisandro Dalcin 
12003ea6fe3dSLisandro Dalcin   /* write matrix header */
12010700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
12029371c9d4SSatish Balay   header[1] = M;
12039371c9d4SSatish Balay   header[2] = N;
120417a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
120517a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
120638b83642SBarry Smith   if (rank == 0) {
120738b83642SBarry Smith     if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT;
120838b83642SBarry Smith     else header[3] = (PetscInt)hnz;
120938b83642SBarry Smith   }
12109566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12118e2fed03SBarry Smith 
12123ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12139566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12143ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12159566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12169566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12178e2fed03SBarry Smith 
12183ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12203ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12213ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12223ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12233ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12248e2fed03SBarry Smith     }
12259371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12269371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12278e2fed03SBarry Smith   }
122817a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12299566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12309566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12318e2fed03SBarry Smith 
12323ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12363ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12373ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12383ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12392e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12408e2fed03SBarry Smith     }
12419371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12429371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12438e2fed03SBarry Smith   }
12449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
124617a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12479566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12489566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12498e2fed03SBarry Smith 
12503ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12519566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12538e2fed03SBarry Smith }
12548e2fed03SBarry Smith 
12559804daf3SBarry Smith #include <petscdraw.h>
1256ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1257d71ae5a4SJacob Faibussowitsch {
125844a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
125932dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1260ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1261b0a32e0cSBarry Smith   PetscViewer       sviewer;
1262f3ef73ceSBarry Smith   PetscViewerFormat format;
1263416022c9SBarry Smith 
12643a40ed3dSBarry Smith   PetscFunctionBegin;
12659566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12669566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12679566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
126832077d6dSBarry Smith   if (iascii) {
12699566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1270ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
1271ef5fdb51SBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)(aij->A->data))->nz + ((Mat_SeqAIJ *)(aij->B->data))->nz;
12729566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12739566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1274ef5fdb51SBarry Smith       for (i = 0; i < (PetscInt)size; i++) {
1275ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1276ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1277ef5fdb51SBarry Smith         navg += nz[i];
1278ef5fdb51SBarry Smith       }
12799566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1280ef5fdb51SBarry Smith       navg = navg / size;
12819566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12823ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1283ef5fdb51SBarry Smith     }
12849566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1285456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12864e220ebcSLois Curfman McInnes       MatInfo   info;
12876335e310SSatish Balay       PetscInt *inodes = NULL;
1288923f20ffSKris Buschelman 
12899566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12909566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12919566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12929566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1293923f20ffSKris Buschelman       if (!inodes) {
12949371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12959371c9d4SSatish Balay                                                      (double)info.memory));
12966831982aSBarry Smith       } else {
12979371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12989371c9d4SSatish Balay                                                      (double)info.memory));
12996831982aSBarry Smith       }
13009566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
13019566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13029566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
13039566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13049566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
13059566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
13069566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
13079566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
13083ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1309fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1310923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13119566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1312923f20ffSKris Buschelman       if (inodes) {
13139566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1314d38fa0fbSBarry Smith       } else {
13159566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1316d38fa0fbSBarry Smith       }
13173ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13184aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13193ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
132008480c60SBarry Smith     }
13218e2fed03SBarry Smith   } else if (isbinary) {
13228e2fed03SBarry Smith     if (size == 1) {
13239566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13249566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13258e2fed03SBarry Smith     } else {
13269566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13278e2fed03SBarry Smith     }
13283ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
132971e56450SStefano Zampini   } else if (iascii && size == 1) {
13309566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13319566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13323ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13330f5bd95cSBarry Smith   } else if (isdraw) {
1334b0a32e0cSBarry Smith     PetscDraw draw;
1335ace3abfcSBarry Smith     PetscBool isnull;
13369566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13379566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13383ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
133919bcc07fSBarry Smith   }
134019bcc07fSBarry Smith 
134171e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
134271e56450SStefano Zampini     Mat A = NULL, Av;
134371e56450SStefano Zampini     IS  isrow, iscol;
13442ee70a88SLois Curfman McInnes 
13459566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13469566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13479566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13489566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
134971e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
135071e56450SStefano Zampini     /*
135171e56450SStefano Zampini     Mat *AA, A = NULL, Av;
135271e56450SStefano Zampini     IS  isrow,iscol;
135371e56450SStefano Zampini 
13549566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13559566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13569566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1357dd400576SPatrick Sanan     if (rank == 0) {
13589566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
135971e56450SStefano Zampini        A    = AA[0];
136071e56450SStefano Zampini        Av   = AA[0];
136195373324SBarry Smith     }
13629566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
136371e56450SStefano Zampini */
13649566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13659566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
136655843e3eSBarry Smith     /*
136755843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1368b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
136955843e3eSBarry Smith     */
13709566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1371dd400576SPatrick Sanan     if (rank == 0) {
137248a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13739566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
137495373324SBarry Smith     }
13759566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13769566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
13779566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
137895373324SBarry Smith   }
13793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13801eb62cbbSBarry Smith }
13811eb62cbbSBarry Smith 
1382d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1383d71ae5a4SJacob Faibussowitsch {
1384ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1385416022c9SBarry Smith 
13863a40ed3dSBarry Smith   PetscFunctionBegin;
13879566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13889566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13899566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13909566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
139148a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1393416022c9SBarry Smith }
1394416022c9SBarry Smith 
1395ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1396d71ae5a4SJacob Faibussowitsch {
139744a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1398f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1399ace3abfcSBarry Smith   PetscBool   hasop;
14008a729477SBarry Smith 
14013a40ed3dSBarry Smith   PetscFunctionBegin;
1402a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
14039566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14043ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1405a2b30743SBarry Smith   }
1406a2b30743SBarry Smith 
140748a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
14084e980039SJed Brown 
1409c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1410da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14119566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14122798e883SHong Zhang       its--;
1413da3a660dSBarry Smith     }
14142798e883SHong Zhang 
14152798e883SHong Zhang     while (its--) {
14169566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14179566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14182798e883SHong Zhang 
1419c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14209566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14219566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14222798e883SHong Zhang 
1423c14dc6b6SHong Zhang       /* local sweep */
14249566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14252798e883SHong Zhang     }
14263a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1427da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14289566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14292798e883SHong Zhang       its--;
1430da3a660dSBarry Smith     }
14312798e883SHong Zhang     while (its--) {
14329566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14339566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14342798e883SHong Zhang 
1435c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14369566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14379566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1438c14dc6b6SHong Zhang 
1439c14dc6b6SHong Zhang       /* local sweep */
14409566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14412798e883SHong Zhang     }
14423a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1443da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14449566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14452798e883SHong Zhang       its--;
1446da3a660dSBarry Smith     }
14472798e883SHong Zhang     while (its--) {
14489566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14499566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14502798e883SHong Zhang 
1451c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14529566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14539566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14542798e883SHong Zhang 
1455c14dc6b6SHong Zhang       /* local sweep */
14569566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14572798e883SHong Zhang     }
1458a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1459a7420bb7SBarry Smith     Vec xx1;
1460a7420bb7SBarry Smith 
14619566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14629566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1463a7420bb7SBarry Smith 
14649566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14659566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1466a7420bb7SBarry Smith     if (!mat->diag) {
14679566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14689566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1469a7420bb7SBarry Smith     }
14709566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1471bd0c2dcbSBarry Smith     if (hasop) {
14729566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1473bd0c2dcbSBarry Smith     } else {
14749566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1475bd0c2dcbSBarry Smith     }
14769566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1477887ee2caSBarry Smith 
14789566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1479a7420bb7SBarry Smith 
1480a7420bb7SBarry Smith     /* local sweep */
14819566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14829566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14839566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1484ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1485c14dc6b6SHong Zhang 
14869566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1487a0808db4SHong Zhang 
14887b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14908a729477SBarry Smith }
1491a66be287SLois Curfman McInnes 
1492ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1493d71ae5a4SJacob Faibussowitsch {
149472e6a0cfSJed Brown   Mat             aA, aB, Aperm;
149572e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
149672e6a0cfSJed Brown   PetscScalar    *aa, *ba;
149772e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
149872e6a0cfSJed Brown   PetscSF         rowsf, sf;
14990298fd71SBarry Smith   IS              parcolp = NULL;
150072e6a0cfSJed Brown   PetscBool       done;
150142e855d1Svictor 
150242e855d1Svictor   PetscFunctionBegin;
15039566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
15049566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
15059566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
15069566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
150772e6a0cfSJed Brown 
150872e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
15099566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
15109566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
15119566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
151272e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15139566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15149566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
151572e6a0cfSJed Brown 
151672e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15179566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15199566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
152072e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15219566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152472e6a0cfSJed Brown 
15259566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15269566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15279566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
152872e6a0cfSJed Brown 
152972e6a0cfSJed Brown   /* Find out where my gcols should go */
15309566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15329566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15339566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15349566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15359566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15369566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15379566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
153872e6a0cfSJed Brown 
15399566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15409566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15419566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
154272e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1543131c27b5Sprj-     PetscInt    row = rdest[i];
1544131c27b5Sprj-     PetscMPIInt rowner;
15459566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
154672e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1547131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1548131c27b5Sprj-       PetscMPIInt cowner;
15499566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
155072e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155172e6a0cfSJed Brown       else onnz[i]++;
155272e6a0cfSJed Brown     }
155372e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1554131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1555131c27b5Sprj-       PetscMPIInt cowner;
15569566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
155772e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155872e6a0cfSJed Brown       else onnz[i]++;
155972e6a0cfSJed Brown     }
156072e6a0cfSJed Brown   }
15619566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15629566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15639566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15649566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15659566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
156672e6a0cfSJed Brown 
15679566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15699566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
157072e6a0cfSJed Brown   for (i = 0; i < m; i++) {
157172e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1572970468b0SJed Brown     PetscInt  j0, rowlen;
157372e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1574970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1575970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15769566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1577970468b0SJed Brown     }
157872e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1579970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1580970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15819566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1582970468b0SJed Brown     }
158372e6a0cfSJed Brown   }
15849566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15859566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15869566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15879566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15889566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15899566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15909566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15919566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15929566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15939566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
159472e6a0cfSJed Brown   *B = Aperm;
15953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
159642e855d1Svictor }
159742e855d1Svictor 
1598ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1599d71ae5a4SJacob Faibussowitsch {
1600c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1601c5e4d11fSDmitry Karpeev 
1602c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
16039566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1604c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
16053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1606c5e4d11fSDmitry Karpeev }
1607c5e4d11fSDmitry Karpeev 
1608ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1609d71ae5a4SJacob Faibussowitsch {
1610a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1611a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16123966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1613a66be287SLois Curfman McInnes 
16143a40ed3dSBarry Smith   PetscFunctionBegin;
16154e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16169566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16172205254eSKarl Rupp 
16189371c9d4SSatish Balay   isend[0] = info->nz_used;
16199371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16209371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16219371c9d4SSatish Balay   isend[3] = info->memory;
16229371c9d4SSatish Balay   isend[4] = info->mallocs;
16232205254eSKarl Rupp 
16249566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16252205254eSKarl Rupp 
16269371c9d4SSatish Balay   isend[0] += info->nz_used;
16279371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16289371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16299371c9d4SSatish Balay   isend[3] += info->memory;
16309371c9d4SSatish Balay   isend[4] += info->mallocs;
1631a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16324e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16334e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16344e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16354e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16364e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1637a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
16381c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16392205254eSKarl Rupp 
16404e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16414e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16424e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16434e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16444e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1645a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
16461c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16472205254eSKarl Rupp 
16484e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16494e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16504e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16514e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16524e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1653a66be287SLois Curfman McInnes   }
16544e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16554e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16564e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1658a66be287SLois Curfman McInnes }
1659a66be287SLois Curfman McInnes 
1660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1661d71ae5a4SJacob Faibussowitsch {
1662c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1663c74985f6SBarry Smith 
16643a40ed3dSBarry Smith   PetscFunctionBegin;
166512c028f9SKris Buschelman   switch (op) {
1666512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
166712c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
166828b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1669a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
167012c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16710ad02fcaSStefano Zampini   case MAT_USE_INODES:
167212c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16731a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1674fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16759566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16769566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
167712c028f9SKris Buschelman     break;
167812c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
167943674050SBarry Smith     MatCheckPreallocated(A, 1);
16804e0d8c25SBarry Smith     a->roworiented = flg;
16812205254eSKarl Rupp 
16829566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16839566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168412c028f9SKris Buschelman     break;
16858c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1686d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1687d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1688d71ae5a4SJacob Faibussowitsch     break;
1689d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1690d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1691d71ae5a4SJacob Faibussowitsch     break;
1692c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1693ffa07934SHong Zhang   case MAT_SPD:
169477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
169577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1696bf108f30SBarry Smith   case MAT_HERMITIAN:
1697bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1698b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1699b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1700b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
170177e54ba9SKris Buschelman     break;
1702d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1703d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1704d71ae5a4SJacob Faibussowitsch     break;
1705957cac9fSHong Zhang   case MAT_STRUCTURE_ONLY:
1706957cac9fSHong Zhang     /* The option is handled directly by MatSetOption() */
1707957cac9fSHong Zhang     break;
1708d71ae5a4SJacob Faibussowitsch   default:
1709d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
17103a40ed3dSBarry Smith   }
17113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1712c74985f6SBarry Smith }
1713c74985f6SBarry Smith 
1714d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1715d71ae5a4SJacob Faibussowitsch {
1716154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
171787828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1718d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1719d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1720b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
172139e00950SLois Curfman McInnes 
17223a40ed3dSBarry Smith   PetscFunctionBegin;
172328b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17247a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17257a0afa10SBarry Smith 
172670f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17277a0afa10SBarry Smith     /*
17287a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17297a0afa10SBarry Smith     */
17307a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1731b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1732d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17337a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17342205254eSKarl Rupp       if (max < tmp) max = tmp;
17357a0afa10SBarry Smith     }
17369566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17377a0afa10SBarry Smith   }
17387a0afa10SBarry Smith 
1739aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1740abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
174139e00950SLois Curfman McInnes 
17429371c9d4SSatish Balay   pvA = &vworkA;
17439371c9d4SSatish Balay   pcA = &cworkA;
17449371c9d4SSatish Balay   pvB = &vworkB;
17459371c9d4SSatish Balay   pcB = &cworkB;
17469371c9d4SSatish Balay   if (!v) {
17479371c9d4SSatish Balay     pvA = NULL;
17489371c9d4SSatish Balay     pvB = NULL;
17499371c9d4SSatish Balay   }
17509371c9d4SSatish Balay   if (!idx) {
17519371c9d4SSatish Balay     pcA = NULL;
17529371c9d4SSatish Balay     if (!v) pcB = NULL;
17539371c9d4SSatish Balay   }
17549566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17559566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1756154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1757154123eaSLois Curfman McInnes 
175870f0671dSBarry Smith   cmap = mat->garray;
1759154123eaSLois Curfman McInnes   if (v || idx) {
1760154123eaSLois Curfman McInnes     if (nztot) {
1761154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1762b1d57f15SBarry Smith       PetscInt imark = -1;
1763154123eaSLois Curfman McInnes       if (v) {
176470f0671dSBarry Smith         *v = v_p = mat->rowvalues;
176539e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
176670f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1767154123eaSLois Curfman McInnes           else break;
1768154123eaSLois Curfman McInnes         }
1769154123eaSLois Curfman McInnes         imark = i;
177070f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
177170f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1772154123eaSLois Curfman McInnes       }
1773154123eaSLois Curfman McInnes       if (idx) {
177470f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
177570f0671dSBarry Smith         if (imark > -1) {
1776ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
177770f0671dSBarry Smith         } else {
1778154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
177970f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1780154123eaSLois Curfman McInnes             else break;
1781154123eaSLois Curfman McInnes           }
1782154123eaSLois Curfman McInnes           imark = i;
178370f0671dSBarry Smith         }
178470f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
178570f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
178639e00950SLois Curfman McInnes       }
17873f97c4b0SBarry Smith     } else {
1788f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1789f4259b30SLisandro Dalcin       if (v) *v = NULL;
17901ca473b0SSatish Balay     }
1791154123eaSLois Curfman McInnes   }
179239e00950SLois Curfman McInnes   *nz = nztot;
17939566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17949566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179639e00950SLois Curfman McInnes }
179739e00950SLois Curfman McInnes 
1798d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1799d71ae5a4SJacob Faibussowitsch {
18007a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
18013a40ed3dSBarry Smith 
18023a40ed3dSBarry Smith   PetscFunctionBegin;
180328b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
18047a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
18053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
180639e00950SLois Curfman McInnes }
180739e00950SLois Curfman McInnes 
1808ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1809d71ae5a4SJacob Faibussowitsch {
1810855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1811ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1812d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1813329f5518SBarry Smith   PetscReal        sum = 0.0;
1814fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
181504ca555eSLois Curfman McInnes 
18163a40ed3dSBarry Smith   PetscFunctionBegin;
181717699dbbSLois Curfman McInnes   if (aij->size == 1) {
18189566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
181937fa93a5SLois Curfman McInnes   } else {
18209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18219566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
182204ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1823fff043a9SJunchao Zhang       v = amata;
182404ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18259371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18269371c9d4SSatish Balay         v++;
182704ca555eSLois Curfman McInnes       }
1828fff043a9SJunchao Zhang       v = bmata;
182904ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18309371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18319371c9d4SSatish Balay         v++;
183204ca555eSLois Curfman McInnes       }
18331c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18348f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18359566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18363a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1837329f5518SBarry Smith       PetscReal *tmp, *tmp2;
1838b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18399566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
18409566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2));
184104ca555eSLois Curfman McInnes       *norm = 0.0;
18429371c9d4SSatish Balay       v     = amata;
18439371c9d4SSatish Balay       jj    = amat->j;
184404ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18459371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18469371c9d4SSatish Balay         v++;
184704ca555eSLois Curfman McInnes       }
18489371c9d4SSatish Balay       v  = bmata;
18499371c9d4SSatish Balay       jj = bmat->j;
185004ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18519371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18529371c9d4SSatish Balay         v++;
185304ca555eSLois Curfman McInnes       }
18541c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1855d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
185604ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
185704ca555eSLois Curfman McInnes       }
18589566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18599566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
18609566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18613a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1862329f5518SBarry Smith       PetscReal ntemp = 0.0;
1863d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
1864fff043a9SJunchao Zhang         v   = amata + amat->i[j];
186504ca555eSLois Curfman McInnes         sum = 0.0;
186604ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18679371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18689371c9d4SSatish Balay           v++;
186904ca555eSLois Curfman McInnes         }
1870fff043a9SJunchao Zhang         v = bmata + bmat->i[j];
187104ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18729371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18739371c9d4SSatish Balay           v++;
187404ca555eSLois Curfman McInnes         }
1875515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
187604ca555eSLois Curfman McInnes       }
18771c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18789566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1879ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18809566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18819566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
188237fa93a5SLois Curfman McInnes   }
18833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1884855ac2c5SLois Curfman McInnes }
1885855ac2c5SLois Curfman McInnes 
1886ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1887d71ae5a4SJacob Faibussowitsch {
1888a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1889a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1890071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1891071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1892a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1893ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1894b7c46309SBarry Smith 
18953a40ed3dSBarry Smith   PetscFunctionBegin;
18967fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18979371c9d4SSatish Balay   ma = A->rmap->n;
18989371c9d4SSatish Balay   na = A->cmap->n;
18999371c9d4SSatish Balay   mb = a->B->rmap->n;
19009371c9d4SSatish Balay   nb = a->B->cmap->n;
19019371c9d4SSatish Balay   ai = Aloc->i;
19029371c9d4SSatish Balay   aj = Aloc->j;
19039371c9d4SSatish Balay   bi = Bloc->i;
19049371c9d4SSatish Balay   bj = Bloc->j;
1905fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
190680bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
190780bcc5a1SJed Brown     PetscSFNode         *oloc;
1908713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
190980bcc5a1SJed Brown 
19109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
191180bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19129566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1913cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
191480bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19159566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
191680bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
191780bcc5a1SJed Brown     /* map those to global */
19189566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19199566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19209566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19219566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
192257168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
192357168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19249566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1925d4bb536fSBarry Smith 
19269566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19279566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
19289566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs)));
19299566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19309566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19319566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1932fc4dec0aSBarry Smith   } else {
1933fc4dec0aSBarry Smith     B = *matout;
19349566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1935fc4dec0aSBarry Smith   }
1936b7c46309SBarry Smith 
1937f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1938a8661f62Sandi selinger   A_diag      = a->A;
1939a8661f62Sandi selinger   B_diag      = &b->A;
1940a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1941a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1942a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1943a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1944f79cb1a0Sandi selinger 
1945f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1946ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1947f79cb1a0Sandi selinger 
19484cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1949a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19507fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19519566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1952f79cb1a0Sandi selinger 
1953b7c46309SBarry Smith   /* copy over the B part */
19549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19559566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1956ce496241SStefano Zampini   pbv = bv;
1957d0f46423SBarry Smith   row = A->rmap->rstart;
19582205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
195961a2fbbaSHong Zhang   cols_tmp = cols;
1960da668accSHong Zhang   for (i = 0; i < mb; i++) {
1961da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19629566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19632205254eSKarl Rupp     row++;
1964720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1965720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1966b7c46309SBarry Smith   }
19679566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1969fc73b1b3SBarry Smith 
19709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1972cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19730de55854SLois Curfman McInnes     *matout = B;
19740de55854SLois Curfman McInnes   } else {
19759566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19760de55854SLois Curfman McInnes   }
19773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1978b7c46309SBarry Smith }
1979b7c46309SBarry Smith 
1980ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1981d71ae5a4SJacob Faibussowitsch {
19824b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19834b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1984b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1985a008b906SSatish Balay 
19863a40ed3dSBarry Smith   PetscFunctionBegin;
19879566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19884b967eb1SSatish Balay   if (rr) {
19899566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
199008401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19914b967eb1SSatish Balay     /* Overlap communication with computation. */
19929566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1993a008b906SSatish Balay   }
19944b967eb1SSatish Balay   if (ll) {
19959566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
199608401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1997dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19984b967eb1SSatish Balay   }
19994b967eb1SSatish Balay   /* scale  the diagonal block */
2000dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
20014b967eb1SSatish Balay 
20024b967eb1SSatish Balay   if (rr) {
20034b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
20049566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
2005dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
20064b967eb1SSatish Balay   }
20073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2008a008b906SSatish Balay }
2009a008b906SSatish Balay 
2010ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2011d71ae5a4SJacob Faibussowitsch {
2012bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20133a40ed3dSBarry Smith 
20143a40ed3dSBarry Smith   PetscFunctionBegin;
20159566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2017bb5a7306SBarry Smith }
2018bb5a7306SBarry Smith 
2019ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2020d71ae5a4SJacob Faibussowitsch {
2021d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2022d4bb536fSBarry Smith   Mat         a, b, c, d;
2023ace3abfcSBarry Smith   PetscBool   flg;
2024d4bb536fSBarry Smith 
20253a40ed3dSBarry Smith   PetscFunctionBegin;
20269371c9d4SSatish Balay   a = matA->A;
20279371c9d4SSatish Balay   b = matA->B;
20289371c9d4SSatish Balay   c = matB->A;
20299371c9d4SSatish Balay   d = matB->B;
2030d4bb536fSBarry Smith 
20319566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
203248a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
20331c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2035d4bb536fSBarry Smith }
2036d4bb536fSBarry Smith 
2037ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2038d71ae5a4SJacob Faibussowitsch {
2039cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2040cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2041cb5b572fSBarry Smith 
2042cb5b572fSBarry Smith   PetscFunctionBegin;
204333f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
204433f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2045cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2046cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2047cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2048cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2049cb5b572fSBarry Smith        then copying the submatrices */
20509566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2051cb5b572fSBarry Smith   } else {
20529566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20539566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2054cb5b572fSBarry Smith   }
20559566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2057cb5b572fSBarry Smith }
2058cb5b572fSBarry Smith 
2059001ddc4fSHong Zhang /*
2060001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2061001ddc4fSHong Zhang    have different nonzero structure.
2062001ddc4fSHong Zhang */
2063d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2064d71ae5a4SJacob Faibussowitsch {
2065001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
206695b7e79eSJed Brown 
206795b7e79eSJed Brown   PetscFunctionBegin;
206895b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
206995b7e79eSJed Brown   for (i = 0; i < m; i++) {
2070001ddc4fSHong Zhang     const PetscInt *xjj = xj + xi[i], *yjj = yj + yi[i];
2071001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2072001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
207395b7e79eSJed Brown     nnz[i] = 0;
207495b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2075001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2076001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
207795b7e79eSJed Brown       nnz[i]++;
207895b7e79eSJed Brown     }
207995b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
208095b7e79eSJed Brown   }
20813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
208295b7e79eSJed Brown }
208395b7e79eSJed Brown 
2084001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2085d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2086d71ae5a4SJacob Faibussowitsch {
2087001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2088001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2089001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2090001ddc4fSHong Zhang 
2091001ddc4fSHong Zhang   PetscFunctionBegin;
20929566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2094001ddc4fSHong Zhang }
2095001ddc4fSHong Zhang 
2096ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2097d71ae5a4SJacob Faibussowitsch {
2098ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2099ac90fabeSBarry Smith 
2100ac90fabeSBarry Smith   PetscFunctionBegin;
2101ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
21029566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
21039566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2104ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
21059566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2106ac90fabeSBarry Smith   } else {
21079f5f6813SShri Abhyankar     Mat       B;
21089f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2109d9d719b4SStefano Zampini 
21109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21119566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21129566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21139566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21149566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21159566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21169566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21179566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21189566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21199566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21209566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21219566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21229566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2123ac90fabeSBarry Smith   }
21243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2125ac90fabeSBarry Smith }
2126ac90fabeSBarry Smith 
21272726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2128354c94deSBarry Smith 
2129ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2130d71ae5a4SJacob Faibussowitsch {
21315f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21325f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2133354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2134354c94deSBarry Smith 
21359566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21369566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21375f80ce2aSJacob Faibussowitsch   }
21383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2139354c94deSBarry Smith }
2140354c94deSBarry Smith 
2141ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2142d71ae5a4SJacob Faibussowitsch {
214399cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214499cafbc1SBarry Smith 
214599cafbc1SBarry Smith   PetscFunctionBegin;
21469566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21479566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214999cafbc1SBarry Smith }
215099cafbc1SBarry Smith 
2151ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2152d71ae5a4SJacob Faibussowitsch {
215399cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
215499cafbc1SBarry Smith 
215599cafbc1SBarry Smith   PetscFunctionBegin;
21569566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21579566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215999cafbc1SBarry Smith }
216099cafbc1SBarry Smith 
2161ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2162d71ae5a4SJacob Faibussowitsch {
2163c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2164475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
2165475b8b61SHong Zhang   PetscScalar       *va, *vv;
2166475b8b61SHong Zhang   Vec                vB, vA;
2167475b8b61SHong Zhang   const PetscScalar *vb;
2168c91732d9SHong Zhang 
2169c91732d9SHong Zhang   PetscFunctionBegin;
21709566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
21719566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2172475b8b61SHong Zhang 
21739566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
2174c91732d9SHong Zhang   if (idx) {
2175475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2176d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2177c91732d9SHong Zhang     }
2178c91732d9SHong Zhang   }
2179c91732d9SHong Zhang 
21809566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
21819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21829566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2183c91732d9SHong Zhang 
21849566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21859566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2186475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2187c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2188475b8b61SHong Zhang       vv[i] = vb[i];
2189c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2190475b8b61SHong Zhang     } else {
2191475b8b61SHong Zhang       vv[i] = va[i];
21929371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2193c91732d9SHong Zhang     }
2194c91732d9SHong Zhang   }
21959566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
21969566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
21979566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21989566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21999566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
22009566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
22013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2202c91732d9SHong Zhang }
2203c91732d9SHong Zhang 
2204ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2205d71ae5a4SJacob Faibussowitsch {
2206f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2207f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2208f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2209f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2210f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2211f07e67edSHong Zhang   Vec                diagV, offdiagV;
2212ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2213ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2214f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2215f07e67edSHong Zhang   Mat                B = mat->B;
2216f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2217c87e5d42SMatthew Knepley 
2218c87e5d42SMatthew Knepley   PetscFunctionBegin;
2219f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2220f07e67edSHong Zhang   if (A->cmap->N == n) {
22219566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22229566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22239566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22249566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22259566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22263ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2227f07e67edSHong Zhang   } else if (n == 0) {
2228f07e67edSHong Zhang     if (m) {
22299566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22309371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22319371c9d4SSatish Balay         a[r] = 0.0;
22329371c9d4SSatish Balay         if (idx) idx[r] = -1;
22339371c9d4SSatish Balay       }
22349566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2235f07e67edSHong Zhang     }
22363ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2237f07e67edSHong Zhang   }
2238f07e67edSHong Zhang 
22399566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22409566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22419566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22429566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2243f07e67edSHong Zhang 
2244f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2246ce496241SStefano Zampini   ba = bav;
2247f07e67edSHong Zhang   bi = b->i;
2248f07e67edSHong Zhang   bj = b->j;
22499566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2250f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2251f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2252f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22539371c9d4SSatish Balay       offdiagA[r]   = *ba;
22549371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2255f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2256f07e67edSHong Zhang       offdiagA[r] = 0.0;
2257f07e67edSHong Zhang 
2258f07e67edSHong Zhang       /* Find first hole in the cmap */
2259f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2260f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2261f07e67edSHong Zhang         if (col > j && j < cstart) {
2262f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2263f07e67edSHong Zhang           break;
2264f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2265f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2266f07e67edSHong Zhang           break;
2267f07e67edSHong Zhang         }
2268f07e67edSHong Zhang       }
22694e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2270f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2271f07e67edSHong Zhang         if (ncols == 0) {
2272f07e67edSHong Zhang           if (cstart) {
2273f07e67edSHong Zhang             offdiagIdx[r] = 0;
2274f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2275f07e67edSHong Zhang         } else { /* ncols > 0 */
2276f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2277f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2278f07e67edSHong Zhang         }
2279f07e67edSHong Zhang       }
2280f07e67edSHong Zhang     }
2281f07e67edSHong Zhang 
2282f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22839371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22849371c9d4SSatish Balay         offdiagA[r]   = *ba;
22859371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
22869371c9d4SSatish Balay       }
22879371c9d4SSatish Balay       ba++;
22889371c9d4SSatish Balay       bj++;
2289f07e67edSHong Zhang     }
2290f07e67edSHong Zhang   }
2291f07e67edSHong Zhang 
22929566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
22939566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2294f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2295f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2296f07e67edSHong Zhang       a[r] = diagA[r];
2297f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2298f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2299f07e67edSHong Zhang       a[r] = diagA[r];
2300c87e5d42SMatthew Knepley       if (idx) {
2301f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2302f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2303f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2304f07e67edSHong Zhang       }
2305f07e67edSHong Zhang     } else {
2306f07e67edSHong Zhang       a[r] = offdiagA[r];
2307f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2308c87e5d42SMatthew Knepley     }
2309c87e5d42SMatthew Knepley   }
23109566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23119566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23129566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23139566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23149566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23159566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23169566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2318c87e5d42SMatthew Knepley }
2319c87e5d42SMatthew Knepley 
2320ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2321d71ae5a4SJacob Faibussowitsch {
232203bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2323fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2324fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
232503bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
232603bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
232703bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2328ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2329ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2330fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2331fa213d2fSHong Zhang   Mat                B = mat->B;
2332fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
233303bc72f1SMatthew Knepley 
233403bc72f1SMatthew Knepley   PetscFunctionBegin;
2335fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2336fa213d2fSHong Zhang   if (A->cmap->N == n) {
23379566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23389566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23399566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23409566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23419566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2343fa213d2fSHong Zhang   } else if (n == 0) {
2344fa213d2fSHong Zhang     if (m) {
23459566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23469371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23479371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23489371c9d4SSatish Balay         if (idx) idx[r] = -1;
23499371c9d4SSatish Balay       }
23509566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2351fa213d2fSHong Zhang     }
23523ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2353fa213d2fSHong Zhang   }
2354fa213d2fSHong Zhang 
23559566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23569566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23579566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23589566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2359fa213d2fSHong Zhang 
2360fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23619566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2362ce496241SStefano Zampini   ba = bav;
2363fa213d2fSHong Zhang   bi = b->i;
2364fa213d2fSHong Zhang   bj = b->j;
23659566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2366fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2367fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2368fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23699371c9d4SSatish Balay       offdiagA[r]   = *ba;
23709371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2371fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2372fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2373fa213d2fSHong Zhang 
2374fa213d2fSHong Zhang       /* Find first hole in the cmap */
2375fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2376fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2377fa213d2fSHong Zhang         if (col > j && j < cstart) {
2378fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2379fa213d2fSHong Zhang           break;
2380fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2381fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2382fa213d2fSHong Zhang           break;
2383fa213d2fSHong Zhang         }
2384fa213d2fSHong Zhang       }
23854e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2386fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2387fa213d2fSHong Zhang         if (ncols == 0) {
2388fa213d2fSHong Zhang           if (cstart) {
2389fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2390fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2391fa213d2fSHong Zhang         } else { /* ncols > 0 */
2392fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2393fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2394fa213d2fSHong Zhang         }
2395fa213d2fSHong Zhang       }
2396fa213d2fSHong Zhang     }
2397fa213d2fSHong Zhang 
2398fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
23999371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24009371c9d4SSatish Balay         offdiagA[r]   = *ba;
24019371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24029371c9d4SSatish Balay       }
24039371c9d4SSatish Balay       ba++;
24049371c9d4SSatish Balay       bj++;
2405fa213d2fSHong Zhang     }
2406fa213d2fSHong Zhang   }
2407fa213d2fSHong Zhang 
24089566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24099566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2410fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2411fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
241203bc72f1SMatthew Knepley       a[r] = diagA[r];
2413fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2414fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2415fa213d2fSHong Zhang       a[r] = diagA[r];
2416fa213d2fSHong Zhang       if (idx) {
2417fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
241803bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2419fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2420fa213d2fSHong Zhang       }
242103bc72f1SMatthew Knepley     } else {
242203bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2423fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
242403bc72f1SMatthew Knepley     }
242503bc72f1SMatthew Knepley   }
24269566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24279566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24299566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24309566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24319566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24329566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
243403bc72f1SMatthew Knepley }
243503bc72f1SMatthew Knepley 
2436ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2437d71ae5a4SJacob Faibussowitsch {
2438c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24391a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24401a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2441c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2442c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2443c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2444ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2445ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24461a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24471a254869SHong Zhang   Mat                B = mat->B;
24481a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2449c87e5d42SMatthew Knepley 
2450c87e5d42SMatthew Knepley   PetscFunctionBegin;
24511a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24521a254869SHong Zhang   if (A->cmap->N == n) {
24539566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24549566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24559566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24569566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24579566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24583ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24591a254869SHong Zhang   } else if (n == 0) {
24601a254869SHong Zhang     if (m) {
24619566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24629371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24639371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24649371c9d4SSatish Balay         if (idx) idx[r] = -1;
24659371c9d4SSatish Balay       }
24669566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24671a254869SHong Zhang     }
24683ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24691a254869SHong Zhang   }
24701a254869SHong Zhang 
24719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24729566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24739566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24749566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24751a254869SHong Zhang 
24761a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24779566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2478ce496241SStefano Zampini   ba = bav;
24791a254869SHong Zhang   bi = b->i;
24801a254869SHong Zhang   bj = b->j;
24819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24821a254869SHong Zhang   for (r = 0; r < m; r++) {
24831a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24841a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24859371c9d4SSatish Balay       offdiagA[r]   = *ba;
24869371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
24871a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
24881a254869SHong Zhang       offdiagA[r] = 0.0;
24891a254869SHong Zhang 
24901a254869SHong Zhang       /* Find first hole in the cmap */
24911a254869SHong Zhang       for (j = 0; j < ncols; j++) {
24921a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
24931a254869SHong Zhang         if (col > j && j < cstart) {
24941a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
24951a254869SHong Zhang           break;
24961a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
24971a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
24981a254869SHong Zhang           break;
24991a254869SHong Zhang         }
25001a254869SHong Zhang       }
25014e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25021a254869SHong Zhang         /* a hole is outside compressed Bcols */
25031a254869SHong Zhang         if (ncols == 0) {
25041a254869SHong Zhang           if (cstart) {
25051a254869SHong Zhang             offdiagIdx[r] = 0;
25061a254869SHong Zhang           } else offdiagIdx[r] = cend;
25071a254869SHong Zhang         } else { /* ncols > 0 */
25081a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25091a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25101a254869SHong Zhang         }
25111a254869SHong Zhang       }
25121a254869SHong Zhang     }
25131a254869SHong Zhang 
25141a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25159371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25169371c9d4SSatish Balay         offdiagA[r]   = *ba;
25179371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25189371c9d4SSatish Balay       }
25199371c9d4SSatish Balay       ba++;
25209371c9d4SSatish Balay       bj++;
25211a254869SHong Zhang     }
25221a254869SHong Zhang   }
25231a254869SHong Zhang 
25249566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25259566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25261a254869SHong Zhang   for (r = 0; r < m; ++r) {
25271a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2528c87e5d42SMatthew Knepley       a[r] = diagA[r];
25291a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25301a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25311a254869SHong Zhang       a[r] = diagA[r];
25321a254869SHong Zhang       if (idx) {
25331a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2534c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25351a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25361a254869SHong Zhang       }
2537c87e5d42SMatthew Knepley     } else {
2538c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25391a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2540c87e5d42SMatthew Knepley     }
2541c87e5d42SMatthew Knepley   }
25429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25449566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25459566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25469566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25479566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25489566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2550c87e5d42SMatthew Knepley }
2551c87e5d42SMatthew Knepley 
2552d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2553d71ae5a4SJacob Faibussowitsch {
2554f6d58c54SBarry Smith   Mat *dummy;
25555494a064SHong Zhang 
25565494a064SHong Zhang   PetscFunctionBegin;
25579566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2558f6d58c54SBarry Smith   *newmat = *dummy;
25599566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25615494a064SHong Zhang }
25625494a064SHong Zhang 
2563ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2564d71ae5a4SJacob Faibussowitsch {
2565bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2566bbead8a2SBarry Smith 
2567bbead8a2SBarry Smith   PetscFunctionBegin;
25689566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25697b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2571bbead8a2SBarry Smith }
2572bbead8a2SBarry Smith 
2573d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2574d71ae5a4SJacob Faibussowitsch {
257573a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
257673a71a0fSBarry Smith 
257773a71a0fSBarry Smith   PetscFunctionBegin;
257808401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25799566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2580679944adSJunchao Zhang   if (x->assembled) {
25819566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2582679944adSJunchao Zhang   } else {
25839566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2584679944adSJunchao Zhang   }
25859566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
25869566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
25873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
258873a71a0fSBarry Smith }
2589bbead8a2SBarry Smith 
2590ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2591d71ae5a4SJacob Faibussowitsch {
2592b1b1104fSBarry Smith   PetscFunctionBegin;
2593b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2594b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
25953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2596b1b1104fSBarry Smith }
2597b1b1104fSBarry Smith 
2598b1b1104fSBarry Smith /*@
2599f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2600f2afee66SBarry Smith 
26012ef1f0ffSBarry Smith   Not Collective
2602f2afee66SBarry Smith 
2603f2afee66SBarry Smith   Input Parameter:
2604f2afee66SBarry Smith . A - the matrix
2605f2afee66SBarry Smith 
2606f2afee66SBarry Smith   Output Parameter:
2607f2afee66SBarry Smith . nz - the number of nonzeros
2608f2afee66SBarry Smith 
2609f2afee66SBarry Smith   Level: advanced
2610f2afee66SBarry Smith 
2611fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2612f2afee66SBarry Smith @*/
2613d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2614d71ae5a4SJacob Faibussowitsch {
2615f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2616f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2617dfebb78cSStefano Zampini   PetscBool   isaij;
2618f2afee66SBarry Smith 
2619f2afee66SBarry Smith   PetscFunctionBegin;
2620dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2621dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2622f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2624f2afee66SBarry Smith }
2625f2afee66SBarry Smith 
2626f2afee66SBarry Smith /*@
2627b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2628b1b1104fSBarry Smith 
2629c3339decSBarry Smith   Collective
2630b1b1104fSBarry Smith 
2631b1b1104fSBarry Smith   Input Parameters:
2632b1b1104fSBarry Smith + A  - the matrix
263311a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2634b1b1104fSBarry Smith 
263596a0c994SBarry Smith   Level: advanced
263696a0c994SBarry Smith 
2637fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2638b1b1104fSBarry Smith @*/
2639d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2640d71ae5a4SJacob Faibussowitsch {
2641b1b1104fSBarry Smith   PetscFunctionBegin;
2642cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2644b1b1104fSBarry Smith }
2645b1b1104fSBarry Smith 
2646d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject)
2647d71ae5a4SJacob Faibussowitsch {
2648b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2649b1b1104fSBarry Smith 
2650b1b1104fSBarry Smith   PetscFunctionBegin;
2651d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2652b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26539566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26541baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2655d0609cedSBarry Smith   PetscOptionsHeadEnd();
26563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2657b1b1104fSBarry Smith }
2658b1b1104fSBarry Smith 
2659ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2660d71ae5a4SJacob Faibussowitsch {
26617d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2662c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26637d68702bSBarry Smith 
26647d68702bSBarry Smith   PetscFunctionBegin;
2665c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26669566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26675519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2668b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26699566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2670b83222d8SBarry Smith     aij->nonew = nonew;
26717d68702bSBarry Smith   }
26729566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26747d68702bSBarry Smith }
26757d68702bSBarry Smith 
2676ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2677d71ae5a4SJacob Faibussowitsch {
26783b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26793b49f96aSBarry Smith 
26803b49f96aSBarry Smith   PetscFunctionBegin;
268108401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26829566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26833b49f96aSBarry Smith   if (d) {
26843b49f96aSBarry Smith     PetscInt rstart;
26859566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
26863b49f96aSBarry Smith     *d += rstart;
26873b49f96aSBarry Smith   }
26883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26893b49f96aSBarry Smith }
26903b49f96aSBarry Smith 
2691ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2692d71ae5a4SJacob Faibussowitsch {
2693a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2694a8ee9fb5SBarry Smith 
2695a8ee9fb5SBarry Smith   PetscFunctionBegin;
26969566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
26973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2698a8ee9fb5SBarry Smith }
26993b49f96aSBarry Smith 
270058c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2701dec0b466SHong Zhang {
2702dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2703dec0b466SHong Zhang 
2704dec0b466SHong Zhang   PetscFunctionBegin;
270558c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
270658c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2708dec0b466SHong Zhang }
2709dec0b466SHong Zhang 
2710cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2711cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2712cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2713cda55fadSBarry Smith                                        MatMult_MPIAIJ,
271497304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27157c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27167c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2717f4259b30SLisandro Dalcin                                        NULL,
2718f4259b30SLisandro Dalcin                                        NULL,
2719f4259b30SLisandro Dalcin                                        NULL,
2720f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2721f4259b30SLisandro Dalcin                                        NULL,
2722f4259b30SLisandro Dalcin                                        NULL,
272341f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2724b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
272597304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2726cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2727cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2728cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2729cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
273097304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2731cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2732cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2733cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2734d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2735f4259b30SLisandro Dalcin                                        NULL,
2736f4259b30SLisandro Dalcin                                        NULL,
2737f4259b30SLisandro Dalcin                                        NULL,
2738f4259b30SLisandro Dalcin                                        NULL,
273926cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2740f4259b30SLisandro Dalcin                                        NULL,
2741f4259b30SLisandro Dalcin                                        NULL,
2742a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2743f4259b30SLisandro Dalcin                                        NULL,
2744d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2745f4259b30SLisandro Dalcin                                        NULL,
2746f4259b30SLisandro Dalcin                                        NULL,
2747f4259b30SLisandro Dalcin                                        NULL,
2748f4259b30SLisandro Dalcin                                        NULL,
2749d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27507dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2751cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2752cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2753cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2754d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2755cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27567d68702bSBarry Smith                                        MatShift_MPIAIJ,
275799e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2758564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
275973a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27608a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27618a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2762f4259b30SLisandro Dalcin                                        NULL,
2763f4259b30SLisandro Dalcin                                        NULL,
276493dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2765f4259b30SLisandro Dalcin                                        NULL,
2766cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
276772e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2768f4259b30SLisandro Dalcin                                        NULL,
27697dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2770e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2771e03a110bSBarry Smith                                        MatView_MPIAIJ,
2772f4259b30SLisandro Dalcin                                        NULL,
2773f4259b30SLisandro Dalcin                                        NULL,
2774f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2775f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2776f4259b30SLisandro Dalcin                                        NULL,
2777f4259b30SLisandro Dalcin                                        NULL,
2778f4259b30SLisandro Dalcin                                        NULL,
2779d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2780c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2781f4259b30SLisandro Dalcin                                        NULL,
2782f4259b30SLisandro Dalcin                                        NULL,
2783f4259b30SLisandro Dalcin                                        NULL,
2784f4259b30SLisandro Dalcin                                        NULL,
27853acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2786b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2787f4259b30SLisandro Dalcin                                        NULL,
2788f4259b30SLisandro Dalcin                                        NULL,
2789f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2790f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2791f4259b30SLisandro Dalcin                                        NULL,
2792f4259b30SLisandro Dalcin                                        NULL,
27935bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
2794a3bbdb47SHong Zhang                                        MatIsSymmetric_MPIAIJ,
2795f4259b30SLisandro Dalcin                                        NULL,
2796f4259b30SLisandro Dalcin                                        NULL,
2797f4259b30SLisandro Dalcin                                        NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
2799f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2800f4259b30SLisandro Dalcin                                        NULL,
280126be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2802f4259b30SLisandro Dalcin                                        NULL,
2803f4259b30SLisandro Dalcin                                        NULL,
2804cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2805f4259b30SLisandro Dalcin                                        NULL,
2806f4259b30SLisandro Dalcin                                        NULL,
2807f4259b30SLisandro Dalcin                                        NULL,
2808b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28094222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2810f4259b30SLisandro Dalcin                                        NULL,
2811f4259b30SLisandro Dalcin                                        NULL,
28122fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2813f4259b30SLisandro Dalcin                                        NULL,
2814d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
281599cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
281669db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2817f4259b30SLisandro Dalcin                                        NULL,
2818f4259b30SLisandro Dalcin                                        NULL,
2819f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2820f4259b30SLisandro Dalcin                                        NULL,
28215494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2822f4259b30SLisandro Dalcin                                        NULL,
28233b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2824d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2825f4259b30SLisandro Dalcin                                        NULL,
2826c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2827f4259b30SLisandro Dalcin                                        NULL,
2828f4259b30SLisandro Dalcin                                        NULL,
2829b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2830f4259b30SLisandro Dalcin                                        NULL,
2831f4259b30SLisandro Dalcin                                        NULL,
2832f4259b30SLisandro Dalcin                                        NULL,
2833b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2834f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2835a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2836bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2837a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28387dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2839f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2840f4259b30SLisandro Dalcin                                        NULL,
2841f4259b30SLisandro Dalcin                                        NULL,
2842187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2843f4259b30SLisandro Dalcin                                        NULL,
2844f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2845f4259b30SLisandro Dalcin                                        NULL,
2846f4259b30SLisandro Dalcin                                        NULL,
2847f4259b30SLisandro Dalcin                                        NULL,
2848f4259b30SLisandro Dalcin                                        NULL,
284946533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2850f4259b30SLisandro Dalcin                                        NULL,
2851f4259b30SLisandro Dalcin                                        NULL,
28529c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2853a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28544222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2855f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2856f4259b30SLisandro Dalcin                                        NULL,
285772833a62Smarkadams4                                        NULL,
285872833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28592d776b49SBarry Smith                                        NULL,
2860dec0b466SHong Zhang                                        /*150*/ NULL,
2861dec0b466SHong Zhang                                        MatEliminateZeros_MPIAIJ};
286236ce4990SBarry Smith 
2863ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2864d71ae5a4SJacob Faibussowitsch {
28652e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28662e8a6d31SBarry Smith 
28672e8a6d31SBarry Smith   PetscFunctionBegin;
28689566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28699566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28712e8a6d31SBarry Smith }
28722e8a6d31SBarry Smith 
2873ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2874d71ae5a4SJacob Faibussowitsch {
28752e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28762e8a6d31SBarry Smith 
28772e8a6d31SBarry Smith   PetscFunctionBegin;
28789566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28799566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28812e8a6d31SBarry Smith }
28828a729477SBarry Smith 
2883d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2884d71ae5a4SJacob Faibussowitsch {
2885ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
28865d2a9ed1SStefano Zampini   PetscMPIInt size;
2887a23d5eceSKris Buschelman 
2888a23d5eceSKris Buschelman   PetscFunctionBegin;
2889ad79cf63SBarry Smith   if (B->hash_active) {
2890aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2891ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2892ad79cf63SBarry Smith   }
28939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
28949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2895899cda47SBarry Smith 
2896cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2897eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2898cb7b82ddSBarry Smith #else
28999566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2900cb7b82ddSBarry Smith #endif
29019566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29029566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29039566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2904cb7b82ddSBarry Smith 
29059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
29069566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29079566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29089566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29099566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29109566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2911cb7b82ddSBarry Smith 
2912ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29139566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29149566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29159566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29169566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2917899cda47SBarry Smith 
29189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2920526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2921cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
292215001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2924a23d5eceSKris Buschelman }
2925a23d5eceSKris Buschelman 
2926ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2927d71ae5a4SJacob Faibussowitsch {
2928ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2929846b4da1SFande Kong 
2930846b4da1SFande Kong   PetscFunctionBegin;
2931846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29329566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2934846b4da1SFande Kong 
2935846b4da1SFande Kong #if defined(PETSC_USE_CTABLE)
2936eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2937846b4da1SFande Kong #else
29389566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2939846b4da1SFande Kong #endif
29409566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29419566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29429566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2943846b4da1SFande Kong 
29449566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->A));
29459566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->B));
2946846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2947846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2948846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
29493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2950846b4da1SFande Kong }
2951846b4da1SFande Kong 
2952d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2953d71ae5a4SJacob Faibussowitsch {
2954d6dfbf8fSBarry Smith   Mat         mat;
2955416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2956d6dfbf8fSBarry Smith 
29573a40ed3dSBarry Smith   PetscFunctionBegin;
2958f4259b30SLisandro Dalcin   *newmat = NULL;
29599566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29609566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29619566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29629566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2963273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2964e1b6402fSHong Zhang 
2965d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2966501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2967e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2968d6dfbf8fSBarry Smith 
296917699dbbSLois Curfman McInnes   a->size         = oldmat->size;
297017699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2971e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2972e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2973501880eeSStefano Zampini   a->rowindices   = NULL;
2974501880eeSStefano Zampini   a->rowvalues    = NULL;
2975bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2976d6dfbf8fSBarry Smith 
29779566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2979420957c1SBarry Smith   if (matin->hash_active) {
2980420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2981420957c1SBarry Smith   } else {
2982420957c1SBarry Smith     mat->preallocated = matin->preallocated;
29832ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
2984aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2985eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2986b1fc9764SSatish Balay #else
29879566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
29889566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
2989b1fc9764SSatish Balay #endif
2990501880eeSStefano Zampini     } else a->colmap = NULL;
29913f41c07dSBarry Smith     if (oldmat->garray) {
2992b1d57f15SBarry Smith       PetscInt len;
2993d0f46423SBarry Smith       len = oldmat->B->cmap->n;
29949566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
29959566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2996501880eeSStefano Zampini     } else a->garray = NULL;
2997d6dfbf8fSBarry Smith 
29980de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
29990de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30000de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3001aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3002aa624791SPierre Jolivet     if (oldmat->Mvctx) PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
30039566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30049566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3005420957c1SBarry Smith   }
30069566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30078a729477SBarry Smith   *newmat = mat;
30083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30098a729477SBarry Smith }
3010416022c9SBarry Smith 
3011d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3012d71ae5a4SJacob Faibussowitsch {
301352f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
301452f91c60SVaclav Hapla 
301552f91c60SVaclav Hapla   PetscFunctionBegin;
301652f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
301752f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3018c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30199566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30209566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30219566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
302252f91c60SVaclav Hapla   if (isbinary) {
30239566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
302452f91c60SVaclav Hapla   } else if (ishdf5) {
302552f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30269566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
302752f91c60SVaclav Hapla #else
302852f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
302952f91c60SVaclav Hapla #endif
303052f91c60SVaclav Hapla   } else {
303198921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
303252f91c60SVaclav Hapla   }
30333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
303452f91c60SVaclav Hapla }
303552f91c60SVaclav Hapla 
3036d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3037d71ae5a4SJacob Faibussowitsch {
30383ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30393ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30403ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30418fb81238SShri Abhyankar 
30428fb81238SShri Abhyankar   PetscFunctionBegin;
30439566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30448fb81238SShri Abhyankar 
30453ea6fe3dSLisandro Dalcin   /* read in matrix header */
30469566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
304708401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30489371c9d4SSatish Balay   M  = header[1];
30499371c9d4SSatish Balay   N  = header[2];
30509371c9d4SSatish Balay   nz = header[3];
305108401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
305208401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
305308401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
305408ea439dSMark F. Adams 
30553ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30569566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30573ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30583ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30593ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30609566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30619566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30628fb81238SShri Abhyankar 
30633ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30649566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3065aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30668fb81238SShri Abhyankar 
30673ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30689566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30709566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30719371c9d4SSatish Balay   rowidxs[0] = 0;
30729371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
307338b83642SBarry Smith   if (nz != PETSC_MAX_INT) {
30741c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
307508401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
307638b83642SBarry Smith   }
307738b83642SBarry Smith 
30783ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
30799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
30809566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
30819566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
30823ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
30839566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
30849566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
30859566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
30863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30878fb81238SShri Abhyankar }
30888fb81238SShri Abhyankar 
30893782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3090ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3091d71ae5a4SJacob Faibussowitsch {
30924aa3045dSJed Brown   IS          iscol_local;
3093c5e4d11fSDmitry Karpeev   PetscBool   isstride;
3094c5e4d11fSDmitry Karpeev   PetscMPIInt lisstride = 0, gisstride;
30953782ecc7SHong Zhang 
30963782ecc7SHong Zhang   PetscFunctionBegin;
30973782ecc7SHong Zhang   /* check if we are grabbing all columns*/
30989566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
30993782ecc7SHong Zhang 
3100c5e4d11fSDmitry Karpeev   if (isstride) {
3101c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31029566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31039566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31049566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
3105c5e4d11fSDmitry Karpeev     if (mstart == start && mlen - mstart == len) lisstride = 1;
3106c5e4d11fSDmitry Karpeev   }
31073782ecc7SHong Zhang 
31081c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3109c5e4d11fSDmitry Karpeev   if (gisstride) {
3110c5e4d11fSDmitry Karpeev     PetscInt N;
31119566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31129566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31139566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31149566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3115c5e4d11fSDmitry Karpeev   } else {
3116c5bfad50SMark F. Adams     PetscInt cbs;
31179566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31189566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31199566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3120b79d0421SJed Brown   }
31213782ecc7SHong Zhang 
31223782ecc7SHong Zhang   *isseq = iscol_local;
31233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3124c5e4d11fSDmitry Karpeev }
31258d2139bdSHong Zhang 
3126ddfdf956SHong Zhang /*
31279c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31289c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3129ddfdf956SHong Zhang 
3130ddfdf956SHong Zhang  Input Parameters:
313127430b45SBarry Smith +   mat - matrix
313227430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31339c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
313427430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3135ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
313627430b45SBarry Smith 
313727430b45SBarry Smith  Output Parameters:
313827430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
313927430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
314027430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
314127430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3142ddfdf956SHong Zhang  */
3143ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[])
3144d71ae5a4SJacob Faibussowitsch {
3145040216a4SHong Zhang   Vec             x, cmap;
3146040216a4SHong Zhang   const PetscInt *is_idx;
3147040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31489c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3149040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3150040216a4SHong Zhang   Mat             B    = a->B;
3151040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3152a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31538b3fa1f7SHong Zhang   MPI_Comm        comm;
31543a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31553782ecc7SHong Zhang 
31563782ecc7SHong Zhang   PetscFunctionBegin;
31579566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31589566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31598b3fa1f7SHong Zhang 
3160ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31619566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31629566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31639566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31649566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31650a351717SHong Zhang 
31669c988bcaSHong Zhang   /* Get start indices */
31679566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3168ddfdf956SHong Zhang   isstart -= ncols;
31699566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3170040216a4SHong Zhang 
31719566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31729566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31739566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3175ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31768b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3177ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31789c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
31798b3fa1f7SHong Zhang   }
31809566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
31819566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
31829566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
31838b3fa1f7SHong Zhang 
31849c988bcaSHong Zhang   /* Get iscol_d */
31859566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
31869566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
31879566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3188feb78a15SHong Zhang 
31899c988bcaSHong Zhang   /* Get isrow_d */
31909566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3191feb78a15SHong Zhang   rstart = mat->rmap->rstart;
31929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
31939566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
31949c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
31959566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3196feb78a15SHong Zhang 
31979566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
31989566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
31999566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3200feb78a15SHong Zhang 
32019c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32029566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32039566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3204ddfdf956SHong Zhang 
32059566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
320607250d77SHong Zhang 
32079566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32089566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
320964efcef9SHong Zhang 
32109c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3211ddfdf956SHong Zhang   /* off-process column indices */
32129c988bcaSHong Zhang   count = 0;
32139566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32149566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3215feb78a15SHong Zhang 
32169566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32179566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32188b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3219f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32209c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32211c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32221c645242SHong Zhang       count++;
32238b3fa1f7SHong Zhang     }
32248b3fa1f7SHong Zhang   }
32259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
322707250d77SHong Zhang 
32289566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3229b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3230b6d9b4e0SHong Zhang 
32319566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32329c988bcaSHong Zhang   *garray = cmap1;
32339c988bcaSHong Zhang 
32349566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32359566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32369566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3238040216a4SHong Zhang }
3239040216a4SHong Zhang 
3240b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3241d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3242d71ae5a4SJacob Faibussowitsch {
3243b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32441fd43edeSHong Zhang   Mat         M = NULL;
32453b00a383SHong Zhang   MPI_Comm    comm;
3246b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32473b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3248b20e2604SHong Zhang   PetscInt    n;
32493b00a383SHong Zhang 
32503b00a383SHong Zhang   PetscFunctionBegin;
32519566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32523b00a383SHong Zhang 
32533b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3254b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32559566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
325628b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32573b00a383SHong Zhang 
32589566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
325928b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32603b00a383SHong Zhang 
32619566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
326228b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32633b00a383SHong Zhang 
3264b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3265b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32669566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32679566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
326848a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32699566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32709566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32713b00a383SHong Zhang 
32723b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
32739c988bcaSHong Zhang     const PetscInt *garray;
3274b20e2604SHong Zhang     PetscInt        BsubN;
32753b00a383SHong Zhang 
3276b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32779566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32783b00a383SHong Zhang 
3279b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
32809566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
32819566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
32823b00a383SHong Zhang 
32839c988bcaSHong Zhang     /* Create submatrix M */
32849566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M));
32853b00a383SHong Zhang 
3286b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3287b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
32887cfce09cSHong Zhang 
32899566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3290b20e2604SHong Zhang     n = asub->B->cmap->N;
3291b20e2604SHong Zhang     if (BsubN > n) {
3292c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
32937cfce09cSHong Zhang       const PetscInt *idx;
32949c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
32959566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
32967cfce09cSHong Zhang 
32979566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
32987cfce09cSHong Zhang       j = 0;
32999566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3300b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33017cfce09cSHong Zhang         if (j >= BsubN) break;
33029c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33037cfce09cSHong Zhang 
33049c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33057cfce09cSHong Zhang           idx_new[i] = idx[j++];
330698921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33077cfce09cSHong Zhang       }
33089566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33097cfce09cSHong Zhang 
33109566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33119566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33127cfce09cSHong Zhang 
3313b20e2604SHong Zhang     } else if (BsubN < n) {
331498921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3315b20e2604SHong Zhang     }
33167cfce09cSHong Zhang 
33179566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3318b20e2604SHong Zhang     *submat = M;
33193b00a383SHong Zhang 
3320e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33219566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33229566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33233b00a383SHong Zhang 
33249566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33259566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33263b00a383SHong Zhang 
33279566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33289566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33293b00a383SHong Zhang   }
33303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33313b00a383SHong Zhang }
33323b00a383SHong Zhang 
3333d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3334d71ae5a4SJacob Faibussowitsch {
33351358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33363782ecc7SHong Zhang   PetscInt  csize;
333718e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33384a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33393782ecc7SHong Zhang   MPI_Comm  comm;
33403782ecc7SHong Zhang 
33413782ecc7SHong Zhang   PetscFunctionBegin;
3342bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3343a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33448f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33459566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3346d5761cdaSHong Zhang     if (isrow_d) {
3347d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3348d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3349d5761cdaSHong Zhang     } else {
33509566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3351d5761cdaSHong Zhang       if (iscol_local) {
3352d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3353d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3354d5761cdaSHong Zhang       }
3355d5761cdaSHong Zhang     }
33568f69fa7bSHong Zhang   } else {
3357e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
335818e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33599566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33603782ecc7SHong Zhang     if (!n) {
336118e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33623782ecc7SHong Zhang     } else {
33639566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33649566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3365ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33668f69fa7bSHong Zhang     }
33673782ecc7SHong Zhang 
3368e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
336918e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33709566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
337118e627e3SHong Zhang     if (!n) {
337218e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
337318e627e3SHong Zhang     } else {
33749566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
33759566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
337618e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
337718e627e3SHong Zhang     }
337818e627e3SHong Zhang 
33799566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
33801c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
338118e627e3SHong Zhang     sameRowDist = tsameDist[0];
338218e627e3SHong Zhang   }
338318e627e3SHong Zhang 
338418e627e3SHong Zhang   if (sameRowDist) {
3385b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
33863b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
33879566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
33883ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3389b20e2604SHong Zhang     } else { /* sameRowDist */
33903b00a383SHong Zhang       /* isrow has same processor distribution as mat */
33911358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
33921358a193SHong Zhang         PetscBool sorted;
33939566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
33949566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
33959566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
339608401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
33971358a193SHong Zhang 
33989566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
33991358a193SHong Zhang         if (sorted) {
34001358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34019566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34023ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34033782ecc7SHong Zhang         }
34041358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
340548c0d076SHong Zhang         IS iscol_sub;
34069566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
340748c0d076SHong Zhang         if (iscol_sub) {
34089566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34093ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
341048c0d076SHong Zhang         }
34111358a193SHong Zhang       }
34121358a193SHong Zhang     }
34131358a193SHong Zhang   }
34143782ecc7SHong Zhang 
3415bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34163782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34179566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
341828b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34193782ecc7SHong Zhang   } else {
342048a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34211358a193SHong Zhang   }
34223782ecc7SHong Zhang 
34239566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34249566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34258f69fa7bSHong Zhang 
3426b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34279566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34289566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3429b79d0421SJed Brown   }
34303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34314aa3045dSJed Brown }
34324aa3045dSJed Brown 
3433feb78a15SHong Zhang /*@C
343411a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3435feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3436feb78a15SHong Zhang 
3437d083f849SBarry Smith   Collective
3438feb78a15SHong Zhang 
3439feb78a15SHong Zhang   Input Parameters:
3440feb78a15SHong Zhang + comm   - MPI communicator
3441feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3442b20e2604SHong Zhang . B      - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine
34432ef1f0ffSBarry Smith - garray - global index of `B` columns
3444feb78a15SHong Zhang 
3445feb78a15SHong Zhang   Output Parameter:
34462ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
344727430b45SBarry Smith 
3448feb78a15SHong Zhang   Level: advanced
3449feb78a15SHong Zhang 
3450feb78a15SHong Zhang   Notes:
345111a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
345211a5261eSBarry Smith 
34532ef1f0ffSBarry Smith   `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore.
3454feb78a15SHong Zhang 
34551cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3456feb78a15SHong Zhang @*/
3457d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat)
3458d71ae5a4SJacob Faibussowitsch {
3459feb78a15SHong Zhang   Mat_MPIAIJ        *maij;
3460e489de8fSHong Zhang   Mat_SeqAIJ        *b  = (Mat_SeqAIJ *)B->data, *bnew;
3461a5348796SHong Zhang   PetscInt          *oi = b->i, *oj = b->j, i, nz, col;
3462ce496241SStefano Zampini   const PetscScalar *oa;
3463e489de8fSHong Zhang   Mat                Bnew;
3464feb78a15SHong Zhang   PetscInt           m, n, N;
34654ab4d6f4SRichard Tran Mills   MatType            mpi_mat_type;
3466feb78a15SHong Zhang 
3467feb78a15SHong Zhang   PetscFunctionBegin;
34689566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
34699566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
347008401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
347137a5e0faSPierre Jolivet   PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3472b6d9b4e0SHong Zhang   /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */
347308401ef6SPierre Jolivet   /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */
3474feb78a15SHong Zhang 
3475e489de8fSHong Zhang   /* Get global columns of mat */
34761c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm));
3477feb78a15SHong Zhang 
34789566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N));
34794ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
34804ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
34814ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
34824ab4d6f4SRichard Tran Mills 
348337a5e0faSPierre Jolivet   if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3484feb78a15SHong Zhang   maij = (Mat_MPIAIJ *)(*mat)->data;
3485feb78a15SHong Zhang 
3486feb78a15SHong Zhang   (*mat)->preallocated = PETSC_TRUE;
3487feb78a15SHong Zhang 
34889566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
34899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3490feb78a15SHong Zhang 
3491e489de8fSHong Zhang   /* Set A as diagonal portion of *mat */
3492feb78a15SHong Zhang   maij->A = A;
3493feb78a15SHong Zhang 
3494a5348796SHong Zhang   nz = oi[m];
3495a5348796SHong Zhang   for (i = 0; i < nz; i++) {
3496a5348796SHong Zhang     col   = oj[i];
3497a5348796SHong Zhang     oj[i] = garray[col];
3498feb78a15SHong Zhang   }
3499feb78a15SHong Zhang 
3500e489de8fSHong Zhang   /* Set Bnew as off-diagonal portion of *mat */
35019566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &oa));
35029566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew));
35039566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &oa));
3504e489de8fSHong Zhang   bnew        = (Mat_SeqAIJ *)Bnew->data;
3505e489de8fSHong Zhang   bnew->maxnz = b->maxnz; /* allocated nonzeros of B */
3506e489de8fSHong Zhang   maij->B     = Bnew;
3507d5761cdaSHong Zhang 
350808401ef6SPierre Jolivet   PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N);
3509d5761cdaSHong Zhang 
3510e489de8fSHong Zhang   b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */
3511d5761cdaSHong Zhang   b->free_a       = PETSC_FALSE;
3512d5761cdaSHong Zhang   b->free_ij      = PETSC_FALSE;
35139566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&B));
3514d5761cdaSHong Zhang 
3515e489de8fSHong Zhang   bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */
3516e489de8fSHong Zhang   bnew->free_a       = PETSC_TRUE;
3517e489de8fSHong Zhang   bnew->free_ij      = PETSC_TRUE;
3518feb78a15SHong Zhang 
3519a5348796SHong Zhang   /* condense columns of maij->B */
35209566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
35219566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
35229566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
35239566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
35249566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3526feb78a15SHong Zhang }
3527feb78a15SHong Zhang 
3528ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35294aa3045dSJed Brown 
3530d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3531d71ae5a4SJacob Faibussowitsch {
353298b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
353385f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
353498b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35351fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
353698b658c4SHong Zhang   MatScalar      *aa;
353700e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3538a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
353998b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
354098b658c4SHong Zhang   IS              iscol_sub, iscmap;
354198b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
354218e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3543a31a438cSHong Zhang   MPI_Comm        comm;
35447e2c5f70SBarry Smith 
3545a0ff6018SBarry Smith   PetscFunctionBegin;
35469566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3547d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35489566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
354928b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35509566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3551d5761cdaSHong Zhang 
35529566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
355328b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3554d5761cdaSHong Zhang 
35559566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
355628b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3557d5761cdaSHong Zhang 
35589566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3559d5761cdaSHong Zhang 
3560d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35613b00a383SHong Zhang     PetscBool flg;
35623b00a383SHong Zhang 
35639566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35649566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3565bcae8d28SHong Zhang 
35663b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3567366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35689566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3569366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
35701c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3571366a327dSHong Zhang     if (allcolumns) {
3572366a327dSHong Zhang       iscol_sub = iscol_local;
35739566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35749566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3575366a327dSHong Zhang 
35763b00a383SHong Zhang     } else {
35771358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3578244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35799566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35809566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
35819566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
35828d2139bdSHong Zhang       count = 0;
3583a31a438cSHong Zhang       k     = 0;
3584a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3585a31a438cSHong Zhang         j = is_idx[i];
3586a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3587a31a438cSHong Zhang           /* diagonal part of mat */
35888d2139bdSHong Zhang           idx[count]     = j;
3589366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
35904a3daf6eSHong Zhang         } else if (Bn) {
3591a31a438cSHong Zhang           /* off-diagonal part of mat */
3592a31a438cSHong Zhang           if (j == garray[k]) {
35938d2139bdSHong Zhang             idx[count]     = j;
3594a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3595a31a438cSHong Zhang           } else if (j > garray[k]) {
3596a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3597a31a438cSHong Zhang             if (j == garray[k]) {
3598a31a438cSHong Zhang               idx[count]     = j;
3599a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36008d2139bdSHong Zhang             }
36018d2139bdSHong Zhang           }
36028d2139bdSHong Zhang         }
36038d2139bdSHong Zhang       }
36049566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36058d2139bdSHong Zhang 
36069566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36079566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36089566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3609b6d9b4e0SHong Zhang 
36109566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3611a31a438cSHong Zhang     }
36128b3fa1f7SHong Zhang 
36133b00a383SHong Zhang     /* (3) Create sequential Msub */
36149566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3615d5761cdaSHong Zhang   }
36168d2139bdSHong Zhang 
36179566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
361898b658c4SHong Zhang   aij = (Mat_SeqAIJ *)(Msub)->data;
361998b658c4SHong Zhang   ii  = aij->i;
36209566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3621a0ff6018SBarry Smith 
3622a0ff6018SBarry Smith   /*
3623a0ff6018SBarry Smith       m - number of local rows
3624a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3625a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3626a0ff6018SBarry Smith   */
36279566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
362898b658c4SHong Zhang 
36293b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36303b00a383SHong Zhang     /* (4) Create parallel newmat */
363198b658c4SHong Zhang     PetscMPIInt rank, size;
3632bcae8d28SHong Zhang     PetscInt    csize;
363398b658c4SHong Zhang 
36349566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36359566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
363600e6dbe6SBarry Smith 
3637a0ff6018SBarry Smith     /*
363800e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
363900e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3640a0ff6018SBarry Smith     */
364100e6dbe6SBarry Smith 
364200e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36439566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36446a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36459566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3646a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3647e2c4fddaSBarry Smith         nlocal = m;
36486a6a5d1dSBarry Smith       } else {
3649a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3650ab50ec6bSBarry Smith       }
3651ab50ec6bSBarry Smith     } else {
36526a6a5d1dSBarry Smith       nlocal = csize;
36536a6a5d1dSBarry Smith     }
36549566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
365500e6dbe6SBarry Smith     rstart = rend - nlocal;
3656aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
365700e6dbe6SBarry Smith 
365800e6dbe6SBarry Smith     /* next, compute all the lengths */
365998b658c4SHong Zhang     jj = aij->j;
36609566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
366100e6dbe6SBarry Smith     olens = dlens + m;
366200e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
366300e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
366400e6dbe6SBarry Smith       olen = 0;
366500e6dbe6SBarry Smith       dlen = 0;
366600e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
366715b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
366800e6dbe6SBarry Smith         else dlen++;
366900e6dbe6SBarry Smith         jj++;
367000e6dbe6SBarry Smith       }
367100e6dbe6SBarry Smith       olens[i] = olen;
367200e6dbe6SBarry Smith       dlens[i] = dlen;
367300e6dbe6SBarry Smith     }
3674b6d9b4e0SHong Zhang 
36759566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36769566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
367798b658c4SHong Zhang 
36789566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36799566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36809566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
36819566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
36829566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
36839566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3684d5761cdaSHong Zhang 
3685d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3686a0ff6018SBarry Smith     M = *newmat;
36879566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
368808401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
36899566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3690c48de900SBarry Smith     /*
3691c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3692c48de900SBarry Smith        rather than the slower MatSetValues().
3693c48de900SBarry Smith     */
3694c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3695c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3696a0ff6018SBarry Smith   }
3697548ecf4dSHong Zhang 
36983b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
36999566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37009566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
370198b658c4SHong Zhang 
370298b658c4SHong Zhang   jj = aij->j;
37039566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3704a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3705a0ff6018SBarry Smith     row = rstart + i;
370600e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
370715b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37089566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37099371c9d4SSatish Balay     jj += nz;
37109371c9d4SSatish Balay     aa += nz;
3711a0ff6018SBarry Smith   }
37129566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37139566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3714a0ff6018SBarry Smith 
37159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37169566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3717fee21e36SBarry Smith 
37189566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
371998b658c4SHong Zhang 
372098b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3721fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37223b00a383SHong Zhang     *newmat = M;
37239566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubMatrix", (PetscObject)Msub));
37249566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
372598b658c4SHong Zhang 
37269566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)(*newmat), "SubIScol", (PetscObject)iscol_sub));
37279566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
372898b658c4SHong Zhang 
37299566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)(*newmat), "Subcmap", (PetscObject)iscmap));
37309566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3731bcae8d28SHong Zhang 
3732bcae8d28SHong Zhang     if (iscol_local) {
37339566063dSJacob Faibussowitsch       PetscCall(PetscObjectCompose((PetscObject)(*newmat), "ISAllGather", (PetscObject)iscol_local));
37349566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3735bcae8d28SHong Zhang     }
373698b658c4SHong Zhang   }
37373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3738a0ff6018SBarry Smith }
3739273d9f13SBarry Smith 
3740df40acb1SHong Zhang /*
3741df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3742df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3743df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3744df40acb1SHong Zhang 
374511a5261eSBarry Smith   This requires a sequential iscol with all indices.
3746df40acb1SHong Zhang */
3747d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3748d71ae5a4SJacob Faibussowitsch {
3749df40acb1SHong Zhang   PetscMPIInt rank, size;
3750df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3751df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3752df40acb1SHong Zhang   Mat         M, Mreuse;
375398b658c4SHong Zhang   MatScalar  *aa, *vwork;
3754df40acb1SHong Zhang   MPI_Comm    comm;
3755df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37560b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3757df40acb1SHong Zhang 
3758df40acb1SHong Zhang   PetscFunctionBegin;
37599566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37609566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37619566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3762df40acb1SHong Zhang 
37630b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37649566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37659566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37660b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
37671c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37680b27a90eSHong Zhang 
3769df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37709566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
377128b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37729566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3773df40acb1SHong Zhang   } else {
37749566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3775df40acb1SHong Zhang   }
3776df40acb1SHong Zhang 
3777df40acb1SHong Zhang   /*
3778df40acb1SHong Zhang       m - number of local rows
3779df40acb1SHong Zhang       n - number of columns (same on all processors)
3780df40acb1SHong Zhang       rstart - first row in new global matrix generated
3781df40acb1SHong Zhang   */
37829566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
37839566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3784df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
3785df40acb1SHong Zhang     aij = (Mat_SeqAIJ *)(Mreuse)->data;
3786df40acb1SHong Zhang     ii  = aij->i;
3787df40acb1SHong Zhang     jj  = aij->j;
3788df40acb1SHong Zhang 
3789df40acb1SHong Zhang     /*
3790df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3791df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3792df40acb1SHong Zhang     */
3793df40acb1SHong Zhang 
3794df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3795df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
37969566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3797df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3798df40acb1SHong Zhang         nlocal = m;
3799df40acb1SHong Zhang       } else {
3800df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3801df40acb1SHong Zhang       }
3802df40acb1SHong Zhang     } else {
3803df40acb1SHong Zhang       nlocal = csize;
3804df40acb1SHong Zhang     }
38059566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3806df40acb1SHong Zhang     rstart = rend - nlocal;
3807aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3808df40acb1SHong Zhang 
3809df40acb1SHong Zhang     /* next, compute all the lengths */
38109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3811df40acb1SHong Zhang     olens = dlens + m;
3812df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3813df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3814df40acb1SHong Zhang       olen = 0;
3815df40acb1SHong Zhang       dlen = 0;
3816df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3817df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3818df40acb1SHong Zhang         else dlen++;
3819df40acb1SHong Zhang         jj++;
3820df40acb1SHong Zhang       }
3821df40acb1SHong Zhang       olens[i] = olen;
3822df40acb1SHong Zhang       dlens[i] = dlen;
3823df40acb1SHong Zhang     }
38249566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38259566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38269566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38279566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38289566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38299566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3830df40acb1SHong Zhang   } else {
3831df40acb1SHong Zhang     PetscInt ml, nl;
3832df40acb1SHong Zhang 
3833df40acb1SHong Zhang     M = *newmat;
38349566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
383508401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38369566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3837df40acb1SHong Zhang     /*
3838df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3839df40acb1SHong Zhang        rather than the slower MatSetValues().
3840df40acb1SHong Zhang     */
3841df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3842df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3843df40acb1SHong Zhang   }
38449566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
3845df40acb1SHong Zhang   aij = (Mat_SeqAIJ *)(Mreuse)->data;
3846df40acb1SHong Zhang   ii  = aij->i;
3847df40acb1SHong Zhang   jj  = aij->j;
38482e5835c6SStefano Zampini 
38492e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3851df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3852df40acb1SHong Zhang     row   = rstart + i;
3853df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38549371c9d4SSatish Balay     cwork = jj;
38559371c9d4SSatish Balay     jj += nz;
38569371c9d4SSatish Balay     vwork = aa;
38579371c9d4SSatish Balay     aa += nz;
38589566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3859df40acb1SHong Zhang   }
38609566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3861df40acb1SHong Zhang 
38629566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38639566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3864df40acb1SHong Zhang   *newmat = M;
3865df40acb1SHong Zhang 
3866df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3867df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38689566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38699566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3870df40acb1SHong Zhang   }
38713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3872df40acb1SHong Zhang }
3873df40acb1SHong Zhang 
3874ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3875d71ae5a4SJacob Faibussowitsch {
38766a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
3877899cda47SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii;
3878ccd8e176SBarry Smith   const PetscInt *JJ;
3879eeb24464SBarry Smith   PetscBool       nooffprocentries;
38806a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3881ccd8e176SBarry Smith 
3882ccd8e176SBarry Smith   PetscFunctionBegin;
3883aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]);
3884899cda47SBarry Smith 
38859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
38869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3887d0f46423SBarry Smith   m      = B->rmap->n;
3888d0f46423SBarry Smith   cstart = B->cmap->rstart;
3889d0f46423SBarry Smith   cend   = B->cmap->rend;
3890d0f46423SBarry Smith   rstart = B->rmap->rstart;
3891899cda47SBarry Smith 
38929566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3893ccd8e176SBarry Smith 
389476bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
38958f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3896ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
3897720a2405SPierre Jolivet       JJ  = J ? J + Ii[i] : NULL;
389808401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
389908401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
390008401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3901ecc77c7aSBarry Smith     }
390276bd3646SJed Brown   }
3903ecc77c7aSBarry Smith 
39048f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3905b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
3906720a2405SPierre Jolivet     JJ      = J ? J + Ii[i] : NULL;
3907ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3908ccd8e176SBarry Smith     d       = 0;
39090daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39100daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3911ccd8e176SBarry Smith     }
3912ccd8e176SBarry Smith     d_nnz[i] = d;
3913ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3914ccd8e176SBarry Smith   }
39159566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39169566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3917ccd8e176SBarry Smith 
39188f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3919ccd8e176SBarry Smith     ii = i + rstart;
3920720a2405SPierre Jolivet     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], J ? J + Ii[i] : NULL, v ? v + Ii[i] : NULL, INSERT_VALUES));
3921ccd8e176SBarry Smith   }
3922eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3923eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39259566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3926eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3927ccd8e176SBarry Smith 
39286a3d2595SBarry Smith   /* count number of entries below block diagonal */
39296a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39306a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39316a3d2595SBarry Smith   Aij->ld = ld;
39326a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39336a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39346a3d2595SBarry Smith     j   = 0;
3935ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39366a3d2595SBarry Smith     ld[i] = j;
3937720a2405SPierre Jolivet     if (J) J += nnz;
39386a3d2595SBarry Smith   }
39396a3d2595SBarry Smith 
39409566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3942ccd8e176SBarry Smith }
3943ccd8e176SBarry Smith 
39441eea217eSSatish Balay /*@
394511a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3946ccd8e176SBarry Smith   (the default parallel PETSc format).
3947ccd8e176SBarry Smith 
3948d083f849SBarry Smith   Collective
3949ccd8e176SBarry Smith 
3950ccd8e176SBarry Smith   Input Parameters:
3951a1661176SMatthew Knepley + B - the matrix
3952ccd8e176SBarry Smith . i - the indices into j for the start of each local row (starts with zero)
39530daa03b5SJed Brown . j - the column indices for each local row (starts with zero)
3954ccd8e176SBarry Smith - v - optional values in the matrix
3955ccd8e176SBarry Smith 
3956ccd8e176SBarry Smith   Level: developer
3957ccd8e176SBarry Smith 
395812251496SSatish Balay   Notes:
39592ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39602ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
396111a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
396212251496SSatish Balay 
39632ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
396412251496SSatish Balay 
396512251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
396612251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3967c5e4d11fSDmitry Karpeev   as shown
396812251496SSatish Balay 
396927430b45SBarry Smith .vb
397027430b45SBarry Smith         1 0 0
397127430b45SBarry Smith         2 0 3     P0
397227430b45SBarry Smith        -------
397327430b45SBarry Smith         4 5 6     P1
397427430b45SBarry Smith 
397527430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
397627430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
397727430b45SBarry Smith         j =  {0,0,2}  [size = 3]
397827430b45SBarry Smith         v =  {1,2,3}  [size = 3]
397927430b45SBarry Smith 
398027430b45SBarry Smith      Process1 [P1] rows_owned=[2]
398127430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
398227430b45SBarry Smith         j =  {0,1,2}  [size = 3]
398327430b45SBarry Smith         v =  {4,5,6}  [size = 3]
398427430b45SBarry Smith .ve
398512251496SSatish Balay 
3986fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
3987db781477SPatrick Sanan           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`
3988ccd8e176SBarry Smith @*/
3989d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
3990d71ae5a4SJacob Faibussowitsch {
3991ccd8e176SBarry Smith   PetscFunctionBegin;
3992cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
39933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3994ccd8e176SBarry Smith }
3995ccd8e176SBarry Smith 
3996273d9f13SBarry Smith /*@C
399711a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
3998273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
3999273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
400020f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4001273d9f13SBarry Smith 
4002d083f849SBarry Smith   Collective
4003273d9f13SBarry Smith 
4004273d9f13SBarry Smith   Input Parameters:
40051c4f3114SJed Brown + B     - the matrix
4006273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4007273d9f13SBarry Smith            (same value is used for all local rows)
4008273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4009273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40102ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4011273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40123287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40133287b5eaSJed Brown            the diagonal entry even if it is zero.
4014273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4015273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4016273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4017273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40182ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4019273d9f13SBarry Smith            structure. The size of this array is equal to the number
4020273d9f13SBarry Smith            of local rows, i.e 'm'.
4021273d9f13SBarry Smith 
40222920cce0SJacob Faibussowitsch   Example Usage:
402327430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
402427430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
402527430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
402627430b45SBarry Smith   as follows
402727430b45SBarry Smith 
402827430b45SBarry Smith .vb
402927430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
403027430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
403127430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
403227430b45SBarry Smith     -------------------------------------
403327430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
403427430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
403527430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
403627430b45SBarry Smith     -------------------------------------
403727430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
403827430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
403927430b45SBarry Smith .ve
404027430b45SBarry Smith 
404127430b45SBarry Smith   This can be represented as a collection of submatrices as
404227430b45SBarry Smith .vb
404327430b45SBarry Smith       A B C
404427430b45SBarry Smith       D E F
404527430b45SBarry Smith       G H I
404627430b45SBarry Smith .ve
404727430b45SBarry Smith 
404827430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
404927430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
405027430b45SBarry Smith 
405127430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
405227430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
405327430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
405427430b45SBarry Smith 
405527430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
405627430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
405727430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
405827430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
405927430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
406027430b45SBarry Smith   matrix, ans [DF] as another `MATSEQAIJ` matrix.
406127430b45SBarry Smith 
406220f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
406320f4b53cSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
406427430b45SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
406520f4b53cSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
406627430b45SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
406720f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
406827430b45SBarry Smith .vb
406927430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
407027430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
407127430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
407227430b45SBarry Smith .ve
407320f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
407427430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
407527430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
407627430b45SBarry Smith   34 values.
407727430b45SBarry Smith 
407820f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
407927430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
408020f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
408127430b45SBarry Smith .vb
408227430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
408327430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
408427430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
408527430b45SBarry Smith .ve
408627430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
408727430b45SBarry Smith   hence pre-allocation is perfect.
408827430b45SBarry Smith 
408927430b45SBarry Smith   Level: intermediate
409027430b45SBarry Smith 
409127430b45SBarry Smith   Notes:
409249a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
409349a6f317SBarry Smith 
409427430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
40950598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4096651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4097273d9f13SBarry Smith 
4098273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4099273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4100273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4101273d9f13SBarry Smith 
4102273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4103a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4104a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4105a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4106a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4107a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4108a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4109a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4110a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4111273d9f13SBarry Smith 
41122ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4113273d9f13SBarry Smith 
411427430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4115aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
411627430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4117aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4118aa95bbe8SBarry Smith 
41191cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4120fe59aa6dSJacob Faibussowitsch           `MatGetInfo()`, `PetscSplitOwnership()`
4121273d9f13SBarry Smith @*/
4122d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4123d71ae5a4SJacob Faibussowitsch {
4124273d9f13SBarry Smith   PetscFunctionBegin;
41256ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41266ba663aaSJed Brown   PetscValidType(B, 1);
4127cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4129273d9f13SBarry Smith }
4130273d9f13SBarry Smith 
413158d36128SBarry Smith /*@
413211a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41338f8f2f0dSBarry Smith   CSR format for the local rows.
41342fb0ec9aSBarry Smith 
4135d083f849SBarry Smith   Collective
41362fb0ec9aSBarry Smith 
41372fb0ec9aSBarry Smith   Input Parameters:
41382fb0ec9aSBarry Smith + comm - MPI communicator
413911a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41402fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
414111a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
41422fb0ec9aSBarry Smith        calculated if N is given) For square matrices n is almost always m.
414311a5261eSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
414411a5261eSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4145483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41462fb0ec9aSBarry Smith . j    - column indices
4147f1f2ae84SBarry Smith - a    - optional matrix values
41482fb0ec9aSBarry Smith 
41492fb0ec9aSBarry Smith   Output Parameter:
41502fb0ec9aSBarry Smith . mat - the matrix
415103bfb495SBarry Smith 
41522fb0ec9aSBarry Smith   Level: intermediate
41532fb0ec9aSBarry Smith 
41542fb0ec9aSBarry Smith   Notes:
41552ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
41562fb0ec9aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
41572ef1f0ffSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41582fb0ec9aSBarry Smith 
41592ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
416012251496SSatish Balay 
416112251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
416212251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
4163c5e4d11fSDmitry Karpeev   as shown
416412251496SSatish Balay 
41658f8f2f0dSBarry Smith   Once you have created the matrix you can update it with new numerical values using MatUpdateMPIAIJWithArrays
41662ef1f0ffSBarry Smith .vb
41672ef1f0ffSBarry Smith         1 0 0
41682ef1f0ffSBarry Smith         2 0 3     P0
41692ef1f0ffSBarry Smith        -------
41702ef1f0ffSBarry Smith         4 5 6     P1
41718f8f2f0dSBarry Smith 
41722ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
41732ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
41742ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
41752ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
41762fb0ec9aSBarry Smith 
41772ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
41782ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
41792ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
41802ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
41812ef1f0ffSBarry Smith .ve
41822ef1f0ffSBarry Smith 
41831cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIK`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4184db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`
41852fb0ec9aSBarry Smith @*/
4186d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4187d71ae5a4SJacob Faibussowitsch {
41882fb0ec9aSBarry Smith   PetscFunctionBegin;
418908401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
419008401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
41919566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
41929566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
41939566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
41949566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
41959566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
41963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
41972fb0ec9aSBarry Smith }
41982fb0ec9aSBarry Smith 
41998f8f2f0dSBarry Smith /*@
420011a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42012ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42022ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42036a3d2595SBarry Smith 
42046a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42058f8f2f0dSBarry Smith 
42068f8f2f0dSBarry Smith   Collective
42078f8f2f0dSBarry Smith 
42088f8f2f0dSBarry Smith   Input Parameters:
42098f8f2f0dSBarry Smith + mat - the matrix
421011a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42118f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
421211a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42138f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
421411a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
421511a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42168f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42178f8f2f0dSBarry Smith . J   - column indices
42188f8f2f0dSBarry Smith - v   - matrix values
42198f8f2f0dSBarry Smith 
42202ef1f0ffSBarry Smith   Level: deprecated
42218f8f2f0dSBarry Smith 
42221cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
422342747ad1SJacob Faibussowitsch           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`
42248f8f2f0dSBarry Smith @*/
4225d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4226d71ae5a4SJacob Faibussowitsch {
42276a3d2595SBarry Smith   PetscInt        nnz, i;
42288f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42298f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4230fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4231fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42328f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42336a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42346a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42358f8f2f0dSBarry Smith 
42368f8f2f0dSBarry Smith   PetscFunctionBegin;
4237aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
423808401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
423908401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
424008401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42418f8f2f0dSBarry Smith 
42429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42448f8f2f0dSBarry Smith 
42458f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
4246*4c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
4247*4c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
4248*4c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
4249*4c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
4250*4c17f1ccSBarry Smith       }
4251*4c17f1ccSBarry Smith     }
42528f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42538f8f2f0dSBarry Smith     Iii = Ii[i];
42548f8f2f0dSBarry Smith     ldi = ld[i];
42558f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42569566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42579566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42589566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42598f8f2f0dSBarry Smith     ad += md;
42608f8f2f0dSBarry Smith     ao += nnz - md;
42618f8f2f0dSBarry Smith   }
42628f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42638f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42669566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42679566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42689566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42699566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42718f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42738f8f2f0dSBarry Smith }
42748f8f2f0dSBarry Smith 
42756a3d2595SBarry Smith /*@
427611a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
42776a3d2595SBarry Smith 
42786a3d2595SBarry Smith   Collective
42796a3d2595SBarry Smith 
42806a3d2595SBarry Smith   Input Parameters:
42816a3d2595SBarry Smith + mat - the matrix
42826a3d2595SBarry Smith - v   - matrix values, stored by row
42836a3d2595SBarry Smith 
42846a3d2595SBarry Smith   Level: intermediate
42856a3d2595SBarry Smith 
428611a5261eSBarry Smith   Note:
42876a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
42886a3d2595SBarry Smith 
42891cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4290fe59aa6dSJacob Faibussowitsch           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`
42916a3d2595SBarry Smith @*/
4292d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4293d71ae5a4SJacob Faibussowitsch {
42946a3d2595SBarry Smith   PetscInt        nnz, i, m;
42956a3d2595SBarry Smith   PetscBool       nooffprocentries;
42966a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
42976a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
42986a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
42996a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43006a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43016a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43026a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43036a3d2595SBarry Smith 
43046a3d2595SBarry Smith   PetscFunctionBegin;
43056a3d2595SBarry Smith   m = mat->rmap->n;
43066a3d2595SBarry Smith 
43076a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43086a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43096a3d2595SBarry Smith   Iii = 0;
43106a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43116a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43126a3d2595SBarry Smith     ldi = ld[i];
43136a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43146a3d2595SBarry Smith     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
43156a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43166a3d2595SBarry Smith     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43176a3d2595SBarry Smith     ad += md;
43186a3d2595SBarry Smith     ao += nnz - md;
43196a3d2595SBarry Smith     Iii += nnz;
43206a3d2595SBarry Smith   }
43216a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43226a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43236a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43246a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43256a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43266a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43276a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43286a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43296a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43306a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43326a3d2595SBarry Smith }
43336a3d2595SBarry Smith 
4334273d9f13SBarry Smith /*@C
433511a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4336273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4337273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43382ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4339273d9f13SBarry Smith 
4340d083f849SBarry Smith   Collective
4341273d9f13SBarry Smith 
4342273d9f13SBarry Smith   Input Parameters:
4343273d9f13SBarry Smith + comm  - MPI communicator
434411a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4345273d9f13SBarry Smith            This value should be the same as the local size used in creating the
4346273d9f13SBarry Smith            y vector for the matrix-vector product y = Ax.
4347273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
434845f401ebSJose E. Roman        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4349273d9f13SBarry Smith        calculated if N is given) For square matrices n is almost always m.
435011a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
435111a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4352273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4353273d9f13SBarry Smith            (same value is used for all local rows)
4354273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4355273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
43562ef1f0ffSBarry Smith            or `NULL`, if `d_nz` is used to specify the nonzero structure.
4357273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
4358273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4359273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4360273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4361273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
43622ef1f0ffSBarry Smith            each row) or `NULL`, if `o_nz` is used to specify the nonzero
4363273d9f13SBarry Smith            structure. The size of this array is equal to the number
4364273d9f13SBarry Smith            of local rows, i.e 'm'.
4365273d9f13SBarry Smith 
4366273d9f13SBarry Smith   Output Parameter:
4367273d9f13SBarry Smith . A - the matrix
4368273d9f13SBarry Smith 
436927430b45SBarry Smith   Options Database Keys:
437027430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
437127430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
437227430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
437327430b45SBarry Smith         See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the vecscatter be viewed as a matrix.
437427430b45SBarry Smith         Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
437527430b45SBarry Smith 
43762ef1f0ffSBarry Smith   Level: intermediate
43772ef1f0ffSBarry Smith 
437827430b45SBarry Smith   Notes:
437977433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4380f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
438111a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4382175b88e8SBarry Smith 
438349a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
438449a6f317SBarry Smith 
43852ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
43862ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4387273d9f13SBarry Smith   storage requirements for this matrix.
4388273d9f13SBarry Smith 
438911a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4390273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4391273d9f13SBarry Smith   that argument.
4392273d9f13SBarry Smith 
4393273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4394273d9f13SBarry Smith   (possibly both).
4395273d9f13SBarry Smith 
439633a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
439733a7c187SSatish Balay   first m0 rows belong to process 0, the next m1 rows belong to
439833a7c187SSatish Balay   process 1, the next m2 rows belong to process 2 etc.. where
439933a7c187SSatish Balay   m0,m1,m2,.. are the input parameter 'm'. i.e each processor stores
440033a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4401273d9f13SBarry Smith 
440233a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
440333a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4404df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
440533a7c187SSatish Balay 
440633a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
440733a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
440833a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
440933a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
441033a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
441133a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
441233a7c187SSatish Balay   illustrates this concept.
441333a7c187SSatish Balay 
441433a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
441533a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
441633a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
441733a7c187SSatish Balay   local matrix (a rectangular submatrix).
4418273d9f13SBarry Smith 
44192ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4420273d9f13SBarry Smith 
442197d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44222ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4423da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4424da57b5cdSKarl Rupp .vb
44252ef1f0ffSBarry Smith   MatCreate(..., &A);
44262ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44272ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44282ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4429da57b5cdSKarl Rupp .ve
443097d05335SKris Buschelman 
4431273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4432273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4433273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4434273d9f13SBarry Smith 
44352920cce0SJacob Faibussowitsch   Example Usage:
4436273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4437273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4438273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4439efc377ccSKarl Rupp   as follows
4440273d9f13SBarry Smith 
4441273d9f13SBarry Smith .vb
4442273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4443273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4444273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4445273d9f13SBarry Smith     -------------------------------------
4446273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4447273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4448273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4449273d9f13SBarry Smith     -------------------------------------
4450273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4451273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4452273d9f13SBarry Smith .ve
4453273d9f13SBarry Smith 
4454da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4455273d9f13SBarry Smith 
4456273d9f13SBarry Smith .vb
4457273d9f13SBarry Smith       A B C
4458273d9f13SBarry Smith       D E F
4459273d9f13SBarry Smith       G H I
4460273d9f13SBarry Smith .ve
4461273d9f13SBarry Smith 
4462273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4463273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4464273d9f13SBarry Smith 
4465273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4466273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4467273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4468273d9f13SBarry Smith 
4469273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4470273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4471273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4472273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
447327430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
4474273d9f13SBarry Smith   matrix, ans [DF] as another SeqAIJ matrix.
4475273d9f13SBarry Smith 
44762ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
44772ef1f0ffSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
4478273d9f13SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
44792ef1f0ffSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
4480273d9f13SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
44812ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4482273d9f13SBarry Smith .vb
448327430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
448427430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
448527430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4486273d9f13SBarry Smith .ve
44872ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4488273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4489273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4490273d9f13SBarry Smith   34 values.
4491273d9f13SBarry Smith 
44922ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4493a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4494da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4495273d9f13SBarry Smith .vb
449627430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
449727430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
449827430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4499273d9f13SBarry Smith .ve
4500273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4501273d9f13SBarry Smith   hence pre-allocation is perfect.
4502273d9f13SBarry Smith 
45031cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4504db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`
4505273d9f13SBarry Smith @*/
4506d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4507d71ae5a4SJacob Faibussowitsch {
4508b1d57f15SBarry Smith   PetscMPIInt size;
4509273d9f13SBarry Smith 
4510273d9f13SBarry Smith   PetscFunctionBegin;
45119566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45129566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45139566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4514273d9f13SBarry Smith   if (size > 1) {
45159566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45169566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4517273d9f13SBarry Smith   } else {
45189566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4520273d9f13SBarry Smith   }
45213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4522273d9f13SBarry Smith }
4523195d93cdSBarry Smith 
45240b98dbb4SBarry Smith /*MC
45250b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix
45260b98dbb4SBarry Smith 
45270b98dbb4SBarry Smith     Synopsis:
45280b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45290b98dbb4SBarry Smith 
45300b98dbb4SBarry Smith     Not Collective
45310b98dbb4SBarry Smith 
45320b98dbb4SBarry Smith     Input Parameter:
45330b98dbb4SBarry Smith .   A - the `MATMPIAIJ` matrix
45340b98dbb4SBarry Smith 
45350b98dbb4SBarry Smith     Output Parameters:
45360b98dbb4SBarry Smith +   Ad - the diagonal portion of the matrix
45374cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45382ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45390b98dbb4SBarry Smith -   ierr - error code
45400b98dbb4SBarry Smith 
45410b98dbb4SBarry Smith      Level: advanced
45420b98dbb4SBarry Smith 
45430b98dbb4SBarry Smith     Note:
45440b98dbb4SBarry Smith     Use  `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45450b98dbb4SBarry Smith 
45461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()`
45470b98dbb4SBarry Smith M*/
45480b98dbb4SBarry Smith 
45490b98dbb4SBarry Smith /*MC
45500b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45510b98dbb4SBarry Smith 
45520b98dbb4SBarry Smith     Synopsis:
45530b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45540b98dbb4SBarry Smith 
45550b98dbb4SBarry Smith     Not Collective
45560b98dbb4SBarry Smith 
45570b98dbb4SBarry Smith     Input Parameters:
45580b98dbb4SBarry Smith +   A - the `MATMPIAIJ` matrix
45590b98dbb4SBarry Smith .   Ad - the diagonal portion of the matrix
45604cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45612ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45620b98dbb4SBarry Smith -   ierr - error code
45630b98dbb4SBarry Smith 
45640b98dbb4SBarry Smith      Level: advanced
45650b98dbb4SBarry Smith 
45661cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()`
45670b98dbb4SBarry Smith M*/
45680b98dbb4SBarry Smith 
4569127ca0efSMatthew Knepley /*@C
45700ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4571127ca0efSMatthew Knepley 
45722ef1f0ffSBarry Smith   Not Collective
4573127ca0efSMatthew Knepley 
4574127ca0efSMatthew Knepley   Input Parameter:
457511a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4576127ca0efSMatthew Knepley 
4577127ca0efSMatthew Knepley   Output Parameters:
457811a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
457911a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
45802ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4581127ca0efSMatthew Knepley 
45820ab4885dSBarry Smith   Level: intermediate
45830ab4885dSBarry Smith 
458411a5261eSBarry Smith   Note:
45852ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
45862ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
45872ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4588127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4589127ca0efSMatthew Knepley 
4590fe59aa6dSJacob Faibussowitsch   Fortran Notes:
45910ab4885dSBarry Smith   `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()`
4592127ca0efSMatthew Knepley 
4593fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4594127ca0efSMatthew Knepley @*/
4595d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4596d71ae5a4SJacob Faibussowitsch {
4597195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
459804cf37c7SBarry Smith   PetscBool   flg;
4599b1d57f15SBarry Smith 
4600195d93cdSBarry Smith   PetscFunctionBegin;
46019566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
460228b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
460321e72a00SBarry Smith   if (Ad) *Ad = a->A;
460421e72a00SBarry Smith   if (Ao) *Ao = a->B;
460521e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4607195d93cdSBarry Smith }
4608a2243be0SBarry Smith 
4609d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4610d71ae5a4SJacob Faibussowitsch {
4611110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46129b8102ccSHong Zhang   PetscInt    *indx;
4613110bb6e1SHong Zhang   PetscScalar *values;
4614421ddf4dSJunchao Zhang   MatType      rootType;
46159b8102ccSHong Zhang 
46169b8102ccSHong Zhang   PetscFunctionBegin;
46179566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4618110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4619110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4620110bb6e1SHong Zhang 
462148a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4622a22543b6SHong Zhang     /* Check sum(n) = N */
46231c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
462408401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4625a22543b6SHong Zhang 
46269566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46279b8102ccSHong Zhang     rstart -= m;
46289b8102ccSHong Zhang 
4629d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46309b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46319566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46329566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46339566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46349b8102ccSHong Zhang     }
46359b8102ccSHong Zhang 
46369566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46379566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46389566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46399566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46409566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46419566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46429566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46439566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4644d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46459566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46469b8102ccSHong Zhang   }
46479b8102ccSHong Zhang 
4648110bb6e1SHong Zhang   /* numeric phase */
46499566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46509b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46519566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46529b8102ccSHong Zhang     Ii = i + rstart;
46539566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46549566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46559b8102ccSHong Zhang   }
46569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46579566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4659c5d6d63eSBarry Smith }
4660c5d6d63eSBarry Smith 
4661d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data)
4662d71ae5a4SJacob Faibussowitsch {
46636718818eSStefano Zampini   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data;
466451a7d1a8SHong Zhang 
466551a7d1a8SHong Zhang   PetscFunctionBegin;
46663ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
46679566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
46689566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
46699566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
46709566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
46719566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
46729566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
46739566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
46749566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
46759566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
46769566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
46779566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
46789566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
46799566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
46809566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
46813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
468251a7d1a8SHong Zhang }
468351a7d1a8SHong Zhang 
4684c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4685c6db04a5SJed Brown #include <petscbt.h>
46864ebed01fSBarry Smith 
4687d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4688d71ae5a4SJacob Faibussowitsch {
4689ce94432eSBarry Smith   MPI_Comm             comm;
469055d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4691b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
4692a2ea699eSBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj;
4693b1d57f15SBarry Smith   PetscInt             proc, m;
4694b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
4695b1d57f15SBarry Smith   PetscInt             k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4696b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
469755d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
469855d1abb9SHong Zhang   MPI_Status          *status;
4699fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4700dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
470155d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4702776b82aeSLisandro Dalcin   PetscContainer       container;
470355d1abb9SHong Zhang 
470455d1abb9SHong Zhang   PetscFunctionBegin;
47059566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47069566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47073c2c1871SHong Zhang 
47089566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47099566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
471055d1abb9SHong Zhang 
47119566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
471228b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47139566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4715fff043a9SJunchao Zhang   aa = a_a;
4716bf0cc555SLisandro Dalcin 
471755d1abb9SHong Zhang   bi     = merge->bi;
471855d1abb9SHong Zhang   bj     = merge->bj;
471955d1abb9SHong Zhang   buf_ri = merge->buf_ri;
472055d1abb9SHong Zhang   buf_rj = merge->buf_rj;
472155d1abb9SHong Zhang 
47229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47237a2fc3feSBarry Smith   owners = merge->rowmap->range;
472455d1abb9SHong Zhang   len_s  = merge->len_s;
472555d1abb9SHong Zhang 
472655d1abb9SHong Zhang   /* send and recv matrix values */
47279566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47289566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
472955d1abb9SHong Zhang 
47309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
473155d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
473255d1abb9SHong Zhang     if (!len_s[proc]) continue;
473355d1abb9SHong Zhang     i = owners[proc];
47349566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
473555d1abb9SHong Zhang     k++;
473655d1abb9SHong Zhang   }
473755d1abb9SHong Zhang 
47389566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47399566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47409566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
474155d1abb9SHong Zhang 
47429566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47439566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
474455d1abb9SHong Zhang 
474555d1abb9SHong Zhang   /* insert mat values of mpimat */
47469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47479566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
474855d1abb9SHong Zhang 
474955d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
475055d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
475155d1abb9SHong Zhang     nrows       = *(buf_ri_k[k]);
475255d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4753a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
475455d1abb9SHong Zhang   }
475555d1abb9SHong Zhang 
475655d1abb9SHong Zhang   /* set values of ba */
47577a2fc3feSBarry Smith   m = merge->rowmap->n;
475855d1abb9SHong Zhang   for (i = 0; i < m; i++) {
475955d1abb9SHong Zhang     arow = owners[rank] + i;
476055d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
476155d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47629566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
476355d1abb9SHong Zhang 
476455d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
476555d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
476655d1abb9SHong Zhang     aj     = a->j + ai[arow];
4767fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
476855d1abb9SHong Zhang     nextaj = 0;
476955d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
477055d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
477155d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
477255d1abb9SHong Zhang       }
477355d1abb9SHong Zhang     }
477455d1abb9SHong Zhang 
477555d1abb9SHong Zhang     /* add received vals into ba */
477655d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
477755d1abb9SHong Zhang       /* i-th row */
477855d1abb9SHong Zhang       if (i == *nextrow[k]) {
477955d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
478055d1abb9SHong Zhang         aj     = buf_rj[k] + *(nextai[k]);
478155d1abb9SHong Zhang         aa     = abuf_r[k] + *(nextai[k]);
478255d1abb9SHong Zhang         nextaj = 0;
478355d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
478455d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
478555d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
478655d1abb9SHong Zhang           }
478755d1abb9SHong Zhang         }
47889371c9d4SSatish Balay         nextrow[k]++;
47899371c9d4SSatish Balay         nextai[k]++;
479055d1abb9SHong Zhang       }
479155d1abb9SHong Zhang     }
47929566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
479355d1abb9SHong Zhang   }
47949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
47959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
47969566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
479755d1abb9SHong Zhang 
47989566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
47999566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
48009566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
48019566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
48029566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
48033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
480455d1abb9SHong Zhang }
480538f152feSBarry Smith 
4806d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4807d71ae5a4SJacob Faibussowitsch {
480855a3bba9SHong Zhang   Mat                  B_mpi;
4809c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4810b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4811b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4812d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
4813a2f3521dSMark F. Adams   PetscInt             len, proc, *dnz, *onz, bs, cbs;
4814c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4815b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
481655d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
481758cb9c82SHong Zhang   MPI_Status          *status;
48180298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4819be0fcf8dSHong Zhang   PetscBT              lnkbt;
482051a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4821776b82aeSLisandro Dalcin   PetscContainer       container;
482202c68681SHong Zhang 
4823e5f2cdd8SHong Zhang   PetscFunctionBegin;
48249566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48253c2c1871SHong Zhang 
482638f152feSBarry Smith   /* make sure it is a PETSc comm */
48279566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48289566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48299566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
483055d1abb9SHong Zhang 
48319566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4833e5f2cdd8SHong Zhang 
48346abd8857SHong Zhang   /* determine row ownership */
48359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48379566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48389566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48399566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
484255d1abb9SHong Zhang 
48437a2fc3feSBarry Smith   m      = merge->rowmap->n;
48447a2fc3feSBarry Smith   owners = merge->rowmap->range;
48456abd8857SHong Zhang 
48466abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48473e06a4e6SHong Zhang   len_s = merge->len_s;
484851a7d1a8SHong Zhang 
48492257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4850c2234fe3SHong Zhang   merge->nsend = 0;
4851409913e3SHong Zhang   for (proc = 0; proc < size; proc++) {
48522257cef7SHong Zhang     len_si[proc] = 0;
48533e06a4e6SHong Zhang     if (proc == rank) {
48546abd8857SHong Zhang       len_s[proc] = 0;
48553e06a4e6SHong Zhang     } else {
485602c68681SHong Zhang       len_si[proc] = owners[proc + 1] - owners[proc] + 1;
48573e06a4e6SHong Zhang       len_s[proc]  = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */
48583e06a4e6SHong Zhang     }
48593e06a4e6SHong Zhang     if (len_s[proc]) {
4860c2234fe3SHong Zhang       merge->nsend++;
48612257cef7SHong Zhang       nrows = 0;
48622257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48632257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48642257cef7SHong Zhang       }
48652257cef7SHong Zhang       len_si[proc] = 2 * (nrows + 1);
48662257cef7SHong Zhang       len += len_si[proc];
4867409913e3SHong Zhang     }
486858cb9c82SHong Zhang   }
4869409913e3SHong Zhang 
48702257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
48719566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
48729566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4873671beff6SHong Zhang 
48743e06a4e6SHong Zhang   /* post the Irecv of j-structure */
48759566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
48769566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
487702c68681SHong Zhang 
48783e06a4e6SHong Zhang   /* post the Isend of j-structure */
48799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
48803e06a4e6SHong Zhang 
48812257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
4882409913e3SHong Zhang     if (!len_s[proc]) continue;
488302c68681SHong Zhang     i = owners[proc];
48849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
488551a7d1a8SHong Zhang     k++;
488651a7d1a8SHong Zhang   }
488751a7d1a8SHong Zhang 
48883e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
48899566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
48909566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
489102c68681SHong Zhang 
489202c68681SHong Zhang   /* send and recv i-structure */
48939566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
48949566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
489502c68681SHong Zhang 
48969566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
48973e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
48982257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
489902c68681SHong Zhang     if (!len_s[proc]) continue;
49003e06a4e6SHong Zhang     /* form outgoing message for i-structure:
49013e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
49023e06a4e6SHong Zhang                [1:nrows]:           row index (global)
49033e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49043e06a4e6SHong Zhang     */
49052257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49063e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49073e06a4e6SHong Zhang     buf_si[0]   = nrows;
49083e06a4e6SHong Zhang     buf_si_i[0] = 0;
49093e06a4e6SHong Zhang     nrows       = 0;
49103e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49113e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49123e06a4e6SHong Zhang       if (anzi) {
49133e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49143e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49153e06a4e6SHong Zhang         nrows++;
49163e06a4e6SHong Zhang       }
49173e06a4e6SHong Zhang     }
49189566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
491902c68681SHong Zhang     k++;
49202257cef7SHong Zhang     buf_si += len_si[proc];
492102c68681SHong Zhang   }
49222257cef7SHong Zhang 
49239566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49249566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
492502c68681SHong Zhang 
49269566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
492748a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49283e06a4e6SHong Zhang 
49299566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49309566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49319566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49329566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49339566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49349566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49359566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
493658cb9c82SHong Zhang 
4937bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
493858cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49399566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
494058cb9c82SHong Zhang   bi[0] = 0;
494158cb9c82SHong Zhang 
4942be0fcf8dSHong Zhang   /* create and initialize a linked list */
4943be0fcf8dSHong Zhang   nlnk = N + 1;
49449566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
494558cb9c82SHong Zhang 
4946bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4947bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49489566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49492205254eSKarl Rupp 
495058cb9c82SHong Zhang   current_space = free_space;
495158cb9c82SHong Zhang 
4952bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49541d79065fSBarry Smith 
49553e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49562257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49573e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49583e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4959a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49603e06a4e6SHong Zhang   }
49612257cef7SHong Zhang 
4962d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4963bcc1bcd5SHong Zhang   len = 0;
496458cb9c82SHong Zhang   for (i = 0; i < m; i++) {
496558cb9c82SHong Zhang     bnzi = 0;
496658cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
496758cb9c82SHong Zhang     arow = owners[rank] + i;
496858cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
496958cb9c82SHong Zhang     aj   = a->j + ai[arow];
49709566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
497158cb9c82SHong Zhang     bnzi += nlnk;
497258cb9c82SHong Zhang     /* add received col data into lnk */
497351a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
497455d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
49753e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
49763e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
49779566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
49783e06a4e6SHong Zhang         bnzi += nlnk;
49799371c9d4SSatish Balay         nextrow[k]++;
49809371c9d4SSatish Balay         nextai[k]++;
49813e06a4e6SHong Zhang       }
498258cb9c82SHong Zhang     }
4983bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
498458cb9c82SHong Zhang 
498558cb9c82SHong Zhang     /* if free space is not available, make more free space */
498648a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
498758cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
49889566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
49899566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
4990bcc1bcd5SHong Zhang 
499158cb9c82SHong Zhang     current_space->array += bnzi;
499258cb9c82SHong Zhang     current_space->local_used += bnzi;
499358cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
499458cb9c82SHong Zhang 
499558cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
499658cb9c82SHong Zhang   }
4997bcc1bcd5SHong Zhang 
49989566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
4999bcc1bcd5SHong Zhang 
50009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
50019566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
50029566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
5003409913e3SHong Zhang 
5004bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50059566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50069566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
500754b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50089566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
500954b84b50SHong Zhang   } else {
50109566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
501154b84b50SHong Zhang   }
50129566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50139566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50149566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5015d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50169566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
501758cb9c82SHong Zhang 
501890431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50196abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5020affca5deSHong Zhang   merge->bi        = bi;
5021affca5deSHong Zhang   merge->bj        = bj;
502202c68681SHong Zhang   merge->buf_ri    = buf_ri;
502302c68681SHong Zhang   merge->buf_rj    = buf_rj;
50240298fd71SBarry Smith   merge->coi       = NULL;
50250298fd71SBarry Smith   merge->coj       = NULL;
50260298fd71SBarry Smith   merge->owners_co = NULL;
5027affca5deSHong Zhang 
50289566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5029bf0cc555SLisandro Dalcin 
5030affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50319566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50329566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
50339566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50349566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50359566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5036affca5deSHong Zhang   *mpimat = B_mpi;
503738f152feSBarry Smith 
50389566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5040e5f2cdd8SHong Zhang }
504125616d81SHong Zhang 
5042d4036a1aSHong Zhang /*@C
504311a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5044d4036a1aSHong Zhang   matrices from each processor
5045d4036a1aSHong Zhang 
5046d083f849SBarry Smith   Collective
5047d4036a1aSHong Zhang 
5048d4036a1aSHong Zhang   Input Parameters:
5049d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5050d4036a1aSHong Zhang . seqmat - the input sequential matrices
505111a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
505211a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
505311a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5054d4036a1aSHong Zhang 
5055d4036a1aSHong Zhang   Output Parameter:
5056d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5057d4036a1aSHong Zhang 
5058d4036a1aSHong Zhang   Level: advanced
5059d4036a1aSHong Zhang 
506011a5261eSBarry Smith   Note:
5061d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5062d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
506311a5261eSBarry Smith   destroyed when mpimat is destroyed. Call `PetscObjectQuery()` to access seqmat.
50642ef1f0ffSBarry Smith 
50651cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5066d4036a1aSHong Zhang @*/
5067d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5068d71ae5a4SJacob Faibussowitsch {
50697e63b356SHong Zhang   PetscMPIInt size;
507055d1abb9SHong Zhang 
507155d1abb9SHong Zhang   PetscFunctionBegin;
50729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
50737e63b356SHong Zhang   if (size == 1) {
50749566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
50757e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
50769566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
50777e63b356SHong Zhang     } else {
50789566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
50797e63b356SHong Zhang     }
50809566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50813ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
50827e63b356SHong Zhang   }
50839566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
508448a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
50859566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
50869566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
508855d1abb9SHong Zhang }
50894ebed01fSBarry Smith 
5090bc08b0f1SBarry Smith /*@
50912920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
50928a9c020eSBarry Smith 
50938a9c020eSBarry Smith   Not Collective
50948a9c020eSBarry Smith 
50952fe279fdSBarry Smith   Input Parameter:
509620f4b53cSBarry Smith . A - the matrix
50978a9c020eSBarry Smith 
50988a9c020eSBarry Smith   Output Parameter:
50998a9c020eSBarry Smith . A_loc - the local sequential matrix generated
51008a9c020eSBarry Smith 
51018a9c020eSBarry Smith   Level: developer
51028a9c020eSBarry Smith 
51038a9c020eSBarry Smith   Notes:
51042920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51052920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51062920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51072920cce0SJacob Faibussowitsch 
510811a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51098a9c020eSBarry Smith 
51102920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51112920cce0SJacob Faibussowitsch 
511211a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51138a9c020eSBarry Smith 
51141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51158a9c020eSBarry Smith @*/
5116d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5117d71ae5a4SJacob Faibussowitsch {
51188a9c020eSBarry Smith   PetscBool mpi;
51198a9c020eSBarry Smith 
51208a9c020eSBarry Smith   PetscFunctionBegin;
51218a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51228a9c020eSBarry Smith   if (mpi) {
51238a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51248a9c020eSBarry Smith   } else {
51258a9c020eSBarry Smith     *A_loc = A;
51268a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51278a9c020eSBarry Smith   }
51283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51298a9c020eSBarry Smith }
51308a9c020eSBarry Smith 
51318a9c020eSBarry Smith /*@
51322920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
513325616d81SHong Zhang 
513432fba14fSHong Zhang   Not Collective
513525616d81SHong Zhang 
513625616d81SHong Zhang   Input Parameters:
513725616d81SHong Zhang + A     - the matrix
513811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
513925616d81SHong Zhang 
514025616d81SHong Zhang   Output Parameter:
514125616d81SHong Zhang . A_loc - the local sequential matrix generated
514225616d81SHong Zhang 
514325616d81SHong Zhang   Level: developer
514425616d81SHong Zhang 
514577c65a98SStefano Zampini   Notes:
51462920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51472920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51482920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51492920cce0SJacob Faibussowitsch 
515011a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51518a9c020eSBarry Smith 
51522920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51532920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51542920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51552920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
515677c65a98SStefano Zampini 
51571cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
515825616d81SHong Zhang @*/
5159d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5160d71ae5a4SJacob Faibussowitsch {
516101b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5162b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5163b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5164ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5165ce496241SStefano Zampini   PetscScalar       *ca, *cam;
516677c65a98SStefano Zampini   PetscMPIInt        size;
5167d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
51685a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
51698661ff28SBarry Smith   PetscBool          match;
517025616d81SHong Zhang 
517125616d81SHong Zhang   PetscFunctionBegin;
51729566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
517328b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
51749566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
517577c65a98SStefano Zampini   if (size == 1) {
517677c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
51779566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
517877c65a98SStefano Zampini       *A_loc = mpimat->A;
517977c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
51809566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
518177c65a98SStefano Zampini     }
51823ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
518377c65a98SStefano Zampini   }
518470a9ba44SHong Zhang 
51859566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5186b78526a6SJose E. Roman   a  = (Mat_SeqAIJ *)(mpimat->A)->data;
5187b78526a6SJose E. Roman   b  = (Mat_SeqAIJ *)(mpimat->B)->data;
51889371c9d4SSatish Balay   ai = a->i;
51899371c9d4SSatish Balay   aj = a->j;
51909371c9d4SSatish Balay   bi = b->i;
51919371c9d4SSatish Balay   bj = b->j;
51929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
51939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5194ce496241SStefano Zampini   aa = aav;
5195ce496241SStefano Zampini   ba = bav;
519601b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
51979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5198dea91ad1SHong Zhang     ci[0] = 0;
5199ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
52009566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
52019566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5202dea91ad1SHong Zhang     k = 0;
520301b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52045a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52055a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
520601b7ae99SHong Zhang       /* off-diagonal portion of A */
52075a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52085a7d977cSHong Zhang         col = cmap[*bj];
52095a7d977cSHong Zhang         if (col >= cstart) break;
52109371c9d4SSatish Balay         cj[k] = col;
52119371c9d4SSatish Balay         bj++;
52125a7d977cSHong Zhang         ca[k++] = *ba++;
52135a7d977cSHong Zhang       }
52145a7d977cSHong Zhang       /* diagonal portion of A */
52155a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52165a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52175a7d977cSHong Zhang         ca[k++] = *aa++;
52185a7d977cSHong Zhang       }
52195a7d977cSHong Zhang       /* off-diagonal portion of A */
52205a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52215a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52225a7d977cSHong Zhang         ca[k++] = *ba++;
52235a7d977cSHong Zhang       }
522425616d81SHong Zhang     }
5225dea91ad1SHong Zhang     /* put together the new matrix */
52269566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5227dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5228dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5229dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5230e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5231e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5232dea91ad1SHong Zhang     mat->nonew   = 0;
52335a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52345a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5235fff043a9SJunchao Zhang     ci  = mat->i;
5236fff043a9SJunchao Zhang     cj  = mat->j;
52379566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52385a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52395a7d977cSHong Zhang       /* off-diagonal portion of A */
52405a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52415a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52425a7d977cSHong Zhang         col = cmap[*bj];
52435a7d977cSHong Zhang         if (col >= cstart) break;
52449371c9d4SSatish Balay         *cam++ = *ba++;
52459371c9d4SSatish Balay         bj++;
52465a7d977cSHong Zhang       }
52475a7d977cSHong Zhang       /* diagonal portion of A */
5248ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5249a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52505a7d977cSHong Zhang       /* off-diagonal portion of A */
5251f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52529371c9d4SSatish Balay         *cam++ = *ba++;
52539371c9d4SSatish Balay         bj++;
5254f33d1a9aSHong Zhang       }
52555a7d977cSHong Zhang     }
52569566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
525798921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52589566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52599566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52609566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
526225616d81SHong Zhang }
526325616d81SHong Zhang 
5264ed502f03SStefano Zampini /*@
526511a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52664cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5267ed502f03SStefano Zampini 
5268ed502f03SStefano Zampini   Not Collective
5269ed502f03SStefano Zampini 
5270ed502f03SStefano Zampini   Input Parameters:
5271ed502f03SStefano Zampini + A     - the matrix
527211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5273ed502f03SStefano Zampini 
5274d8d19677SJose E. Roman   Output Parameters:
52752ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5276ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5277ed502f03SStefano Zampini 
5278ed502f03SStefano Zampini   Level: developer
5279ed502f03SStefano Zampini 
528011a5261eSBarry Smith   Note:
52812ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
52824cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5283ed502f03SStefano Zampini 
52841cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5285ed502f03SStefano Zampini @*/
5286d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5287d71ae5a4SJacob Faibussowitsch {
5288ed502f03SStefano Zampini   Mat             Ao, Ad;
5289ed502f03SStefano Zampini   const PetscInt *cmap;
5290ed502f03SStefano Zampini   PetscMPIInt     size;
5291ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5292ed502f03SStefano Zampini 
5293ed502f03SStefano Zampini   PetscFunctionBegin;
52949566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
52959566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5296ed502f03SStefano Zampini   if (size == 1) {
5297ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52989566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5299ed502f03SStefano Zampini       *A_loc = Ad;
5300ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53019566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5302ed502f03SStefano Zampini     }
53039566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53043ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5305ed502f03SStefano Zampini   }
53069566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53079566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5308ed502f03SStefano Zampini   if (f) {
53099566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5310ed502f03SStefano Zampini   } else {
5311ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5312ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5313ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5314ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5315ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5316ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5317ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5318ed502f03SStefano Zampini     PetscScalar       *ca;
5319ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5320ed502f03SStefano Zampini 
53219566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53229566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53239566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5325ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5326ed502f03SStefano Zampini       PetscInt k;
53279566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53289566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53299566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5330ed502f03SStefano Zampini       ci[0] = 0;
5331ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5332ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5333ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5334ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5335ed502f03SStefano Zampini         /* diagonal portion of A */
5336ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5337ed502f03SStefano Zampini           cj[k] = *aj++;
5338ed502f03SStefano Zampini           ca[k] = *aa++;
5339ed502f03SStefano Zampini         }
5340ed502f03SStefano Zampini         /* off-diagonal portion of A */
5341ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5342ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5343ed502f03SStefano Zampini           ca[k] = *ba++;
5344ed502f03SStefano Zampini         }
5345ed502f03SStefano Zampini       }
5346ed502f03SStefano Zampini       /* put together the new matrix */
53479566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5348ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5349ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5350ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5351ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5352ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5353ed502f03SStefano Zampini       c->nonew   = 0;
53549566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5355ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53569566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5357ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5358ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5359ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5360ed502f03SStefano Zampini         /* diagonal portion of A */
5361ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5362ed502f03SStefano Zampini         /* off-diagonal portion of A */
5363ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5364ed502f03SStefano Zampini       }
53659566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
536698921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53679566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
53689566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5369ed502f03SStefano Zampini     if (glob) {
5370ed502f03SStefano Zampini       PetscInt cst, *gidx;
5371ed502f03SStefano Zampini 
53729566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
53739566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5374ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5375ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
53769566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5377ed502f03SStefano Zampini     }
5378ed502f03SStefano Zampini   }
53799566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
53803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5381ed502f03SStefano Zampini }
5382ed502f03SStefano Zampini 
538332fba14fSHong Zhang /*@C
538411a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
538532fba14fSHong Zhang 
538632fba14fSHong Zhang   Not Collective
538732fba14fSHong Zhang 
538832fba14fSHong Zhang   Input Parameters:
538932fba14fSHong Zhang + A     - the matrix
539011a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
539120f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
539220f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
539332fba14fSHong Zhang 
539432fba14fSHong Zhang   Output Parameter:
539532fba14fSHong Zhang . A_loc - the local sequential matrix generated
539632fba14fSHong Zhang 
539732fba14fSHong Zhang   Level: developer
539832fba14fSHong Zhang 
53991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
540032fba14fSHong Zhang @*/
5401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5402d71ae5a4SJacob Faibussowitsch {
540332fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
540432fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
540532fba14fSHong Zhang   IS          isrowa, iscola;
540632fba14fSHong Zhang   Mat        *aloc;
54074a2b5492SBarry Smith   PetscBool   match;
540832fba14fSHong Zhang 
540932fba14fSHong Zhang   PetscFunctionBegin;
54109566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
541128b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54129566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
541332fba14fSHong Zhang   if (!row) {
54149371c9d4SSatish Balay     start = A->rmap->rstart;
54159371c9d4SSatish Balay     end   = A->rmap->rend;
54169566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
541732fba14fSHong Zhang   } else {
541832fba14fSHong Zhang     isrowa = *row;
541932fba14fSHong Zhang   }
542032fba14fSHong Zhang   if (!col) {
5421d0f46423SBarry Smith     start = A->cmap->rstart;
542232fba14fSHong Zhang     cmap  = a->garray;
5423d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5424d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54259566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
542632fba14fSHong Zhang     ncols = 0;
542732fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
542832fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
542932fba14fSHong Zhang       else break;
543032fba14fSHong Zhang     }
543132fba14fSHong Zhang     imark = i;
543232fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
543332fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54349566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
543532fba14fSHong Zhang   } else {
543632fba14fSHong Zhang     iscola = *col;
543732fba14fSHong Zhang   }
543832fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54399566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
544032fba14fSHong Zhang     aloc[0] = *A_loc;
544132fba14fSHong Zhang   }
54429566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5443109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54449566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5445109e0772SStefano Zampini   }
544632fba14fSHong Zhang   *A_loc = aloc[0];
54479566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
544848a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
544948a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54509566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
545232fba14fSHong Zhang }
545332fba14fSHong Zhang 
54545c65b9ecSFande Kong /*
54555c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54565c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54575c65b9ecSFande Kong  * on a global size.
54585c65b9ecSFande Kong  * */
5459ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5460d71ae5a4SJacob Faibussowitsch {
54615c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
54625c65b9ecSFande Kong   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)(p->A)->data, *po = (Mat_SeqAIJ *)(p->B)->data, *p_oth;
5463131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5464131c27b5Sprj-   PetscMPIInt            owner;
54655c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54665c65b9ecSFande Kong   const PetscInt        *lrowindices;
54675c65b9ecSFande Kong   PetscSF                sf, osf;
54685c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
54695c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
54705c65b9ecSFande Kong   MPI_Comm               comm;
54715c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5472fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
54735c65b9ecSFande Kong 
54745c65b9ecSFande Kong   PetscFunctionBegin;
54759566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
54765c65b9ecSFande Kong   /* plocalsize is the number of roots
54775c65b9ecSFande Kong    * nrows is the number of leaves
54785c65b9ecSFande Kong    * */
54799566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
54809566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
54819566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
54829566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
54835c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
54845c65b9ecSFande Kong     /* Find a remote index and an owner for a row
54855c65b9ecSFande Kong      * The row could be local or remote
54865c65b9ecSFande Kong      * */
548734bcad68SFande Kong     owner = 0;
548834bcad68SFande Kong     lidx  = 0;
54899566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
54905c65b9ecSFande Kong     iremote[i].index = lidx;
54915c65b9ecSFande Kong     iremote[i].rank  = owner;
54925c65b9ecSFande Kong   }
54935c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
54949566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5495f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
54965c65b9ecSFande Kong    * offsets
54975c65b9ecSFande Kong    * */
54989566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
54999566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55009566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5501bc8e477aSFande Kong 
55029566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
55039566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55049566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55055c65b9ecSFande Kong   roffsets[0] = 0;
55065c65b9ecSFande Kong   roffsets[1] = 0;
55075c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55084cf0e950SBarry Smith     /* diagonal */
55095c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55104cf0e950SBarry Smith     /* off-diagonal */
55115c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55125c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55135c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55145c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55155c65b9ecSFande Kong   }
55169566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55179566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55185c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55199566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55209566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55219566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55229566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55239566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55249566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55259566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55265c65b9ecSFande Kong   dntotalcols = 0;
55275c65b9ecSFande Kong   ontotalcols = 0;
5528bc8e477aSFande Kong   ncol        = 0;
55295c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55305c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5531bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55324cf0e950SBarry Smith     /* diagonal */
55335c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55344cf0e950SBarry Smith     /* off-diagonal */
55355c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55365c65b9ecSFande Kong   }
55375c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55385c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55395c65b9ecSFande Kong    * */
55409566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55419566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55429566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55435c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55444cf0e950SBarry Smith   /* diagonal */
55459566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55464cf0e950SBarry Smith   /* off-diagonal */
55479566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55484cf0e950SBarry Smith   /* diagonal */
55499566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55504cf0e950SBarry Smith   /* off-diagonal */
55519566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55525c65b9ecSFande Kong   dntotalcols = 0;
55535c65b9ecSFande Kong   ontotalcols = 0;
55545c65b9ecSFande Kong   ntotalcols  = 0;
55555c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
555634bcad68SFande Kong     owner = 0;
55579566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55585c65b9ecSFande Kong     /* Set iremote for diag matrix */
55595c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55605c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55615c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55625c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55635c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55645c65b9ecSFande Kong     }
55654cf0e950SBarry Smith     /* off-diagonal */
55665c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
55675c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
55685c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
55695c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
55705c65b9ecSFande Kong     }
55715c65b9ecSFande Kong   }
55729566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
55739566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
55749566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
55759566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
55765c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
55775c65b9ecSFande Kong    * Diag matrix
55785c65b9ecSFande Kong    * */
55799566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55809566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55819566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
55825c65b9ecSFande Kong 
55839566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
55844cf0e950SBarry Smith   /* off-diagonal */
55859566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
55869566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
55879566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
55889566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
55899566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
55904cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
55919566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
55929566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
55939566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
55945c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
55955c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
55969566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
55975c65b9ecSFande Kong   /* We want P_oth store global indices */
55989566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
55995c65b9ecSFande Kong   /* Use memory scalable approach */
56009566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
56019566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
56029566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56039566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56045c65b9ecSFande Kong   /* Convert back to local indices */
56055c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56069566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56075c65b9ecSFande Kong   nout = 0;
56089566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
560908401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56109566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56115c65b9ecSFande Kong   /* Exchange values */
56129566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56139566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56165c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56175c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56189566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56199566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56205c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56219566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56229566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56239566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56249566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56265c65b9ecSFande Kong }
56275c65b9ecSFande Kong 
56285c65b9ecSFande Kong /*
56295c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56305c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56315c65b9ecSFande Kong  * */
5632d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5633d71ae5a4SJacob Faibussowitsch {
56345c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5635bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5636bc8e477aSFande Kong   IS          rows, map;
5637bc8e477aSFande Kong   PetscHMapI  hamp;
5638bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56395c65b9ecSFande Kong   MPI_Comm    comm;
56405c65b9ecSFande Kong   PetscSF     sf, osf;
5641bc8e477aSFande Kong   PetscBool   has;
56425c65b9ecSFande Kong 
56435c65b9ecSFande Kong   PetscFunctionBegin;
56449566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56459566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56465c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56475c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56485c65b9ecSFande Kong    * */
56495c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56505c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5651eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56529566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5653bc8e477aSFande Kong     count = 0;
5654bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5655bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5656bc8e477aSFande Kong       key = a->garray[i] / dof;
56579566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5658bc8e477aSFande Kong       if (!has) {
5659bc8e477aSFande Kong         mapping[i] = count;
56609566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5661bc8e477aSFande Kong       } else {
5662bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5663bc8e477aSFande Kong         mapping[i] = count - 1;
56645c65b9ecSFande Kong       }
5665bc8e477aSFande Kong     }
56669566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
56679566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5668eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
56699566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
56705c65b9ecSFande Kong     off = 0;
56719566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
56729566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
56739566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
56749566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
56755c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
56769566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
56779566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
56789566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
56799566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
56809566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
56815c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
56825c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
568335cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5684fff043a9SJunchao Zhang      */
5685fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5686fff043a9SJunchao Zhang 
56879566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
56889566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
568908401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
56905c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
56915c65b9ecSFande Kong     /* Update values in place */
56929566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56939566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56949566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56959566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56969566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56979566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56989566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56999566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
57006718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
57019566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
57023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57035c65b9ecSFande Kong }
57045c65b9ecSFande Kong 
570525616d81SHong Zhang /*@C
570620f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
570725616d81SHong Zhang 
5708c3339decSBarry Smith   Collective
570925616d81SHong Zhang 
571025616d81SHong Zhang   Input Parameters:
571111a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
571211a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
571311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
571425616d81SHong Zhang 
5715f1a722f8SMatthew G. Knepley   Output Parameters:
571627430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
571727430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5718f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
571925616d81SHong Zhang 
572025616d81SHong Zhang   Level: developer
572125616d81SHong Zhang 
572220f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
572325616d81SHong Zhang @*/
5724d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5725d71ae5a4SJacob Faibussowitsch {
5726899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5727b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
572825616d81SHong Zhang   IS          isrowb, iscolb;
57290298fd71SBarry Smith   Mat        *bseq = NULL;
573025616d81SHong Zhang 
573125616d81SHong Zhang   PetscFunctionBegin;
573220f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
573320f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57349566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
573525616d81SHong Zhang 
573625616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5737d0f46423SBarry Smith     start = A->cmap->rstart;
573825616d81SHong Zhang     cmap  = a->garray;
5739d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5740d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57419566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
574225616d81SHong Zhang     ncols = 0;
57430390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
574425616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
574525616d81SHong Zhang       else break;
574625616d81SHong Zhang     }
574725616d81SHong Zhang     imark = i;
57480390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57490390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57509566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57519566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
575225616d81SHong Zhang   } else {
575308401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57549371c9d4SSatish Balay     isrowb = *rowb;
57559371c9d4SSatish Balay     iscolb = *colb;
57569566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
575725616d81SHong Zhang     bseq[0] = *B_seq;
575825616d81SHong Zhang   }
57599566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
576025616d81SHong Zhang   *B_seq = bseq[0];
57619566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
576225616d81SHong Zhang   if (!rowb) {
57639566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
576425616d81SHong Zhang   } else {
576525616d81SHong Zhang     *rowb = isrowb;
576625616d81SHong Zhang   }
576725616d81SHong Zhang   if (!colb) {
57689566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
576925616d81SHong Zhang   } else {
577025616d81SHong Zhang     *colb = iscolb;
577125616d81SHong Zhang   }
57729566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
57733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
577425616d81SHong Zhang }
5775429d309bSHong Zhang 
5776f8487c73SHong Zhang /*
577727430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
577801b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5779429d309bSHong Zhang 
5780c3339decSBarry Smith     Collective
5781429d309bSHong Zhang 
5782429d309bSHong Zhang    Input Parameters:
578327430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
578427430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5785429d309bSHong Zhang 
5786429d309bSHong Zhang    Output Parameter:
57870298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
57880298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
57890298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5790598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5791429d309bSHong Zhang 
579211a5261eSBarry Smith     Developer Note:
579311a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
57946eb45d04SBarry Smith      for this matrix. This is not desirable..
57956eb45d04SBarry Smith 
5796429d309bSHong Zhang     Level: developer
5797429d309bSHong Zhang 
5798f8487c73SHong Zhang */
5799d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5800d71ae5a4SJacob Faibussowitsch {
5801899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
580287025532SHong Zhang   Mat_SeqAIJ        *b_oth;
58034b8d542aSHong Zhang   VecScatter         ctx;
5804ce94432eSBarry Smith   MPI_Comm           comm;
58053515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58063515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5807277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
5808f4259b30SLisandro Dalcin   PetscInt           i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len;
5809277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5810ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5811ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5812429d309bSHong Zhang 
5813429d309bSHong Zhang   PetscFunctionBegin;
58149566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58159566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5816a7c7454dSHong Zhang 
581720f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
581820f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58199566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58209566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5821a6b2eed2SHong Zhang 
5822ec07b8f8SHong Zhang   if (size == 1) {
5823ec07b8f8SHong Zhang     startsj_s = NULL;
5824ec07b8f8SHong Zhang     bufa_ptr  = NULL;
582552f7967eSHong Zhang     *B_oth    = NULL;
58263ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5827ec07b8f8SHong Zhang   }
5828ec07b8f8SHong Zhang 
5829fa83eaafSHong Zhang   ctx = a->Mvctx;
58304b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58314b8d542aSHong Zhang 
58329566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58333515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58349566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58359566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58369566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5837ddea5d60SJunchao Zhang   rwaits = reqs;
5838ddea5d60SJunchao Zhang   swaits = reqs + nrecvs;
5839429d309bSHong Zhang 
5840b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5841429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5842a6b2eed2SHong Zhang     /* i-array */
5843a6b2eed2SHong Zhang     /*  post receives */
58449566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5845a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
584674268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5847e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58489566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5849429d309bSHong Zhang     }
5850a6b2eed2SHong Zhang 
5851a6b2eed2SHong Zhang     /* pack the outgoing message */
58529566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58532205254eSKarl Rupp 
58542205254eSKarl Rupp     sstartsj[0] = 0;
58552205254eSKarl Rupp     rstartsj[0] = 0;
5856a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58573515ee7fSJunchao Zhang     if (nsends) {
58583515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58599566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58603515ee7fSJunchao Zhang     }
5861a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58623515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5863e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
586487025532SHong Zhang       for (j = 0; j < nrows; j++) {
5865d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5866e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
58679566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
58682205254eSKarl Rupp 
5869e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
58702205254eSKarl Rupp 
5871e42f35eeSHong Zhang           len += ncols;
58729566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5873e42f35eeSHong Zhang         }
5874a6b2eed2SHong Zhang         k++;
5875429d309bSHong Zhang       }
58769566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
58772205254eSKarl Rupp 
5878dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5879429d309bSHong Zhang     }
588087025532SHong Zhang     /* recvs and sends of i-array are completed */
58819566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
58829566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5883e42f35eeSHong Zhang 
5884a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
58859566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
58869566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5887a6b2eed2SHong Zhang 
588887025532SHong Zhang     /* create i-array of B_oth */
58899566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
58902205254eSKarl Rupp 
589187025532SHong Zhang     b_othi[0] = 0;
5892a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5893a6b2eed2SHong Zhang     k         = 0;
5894a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
58953515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
58963515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
589787025532SHong Zhang       for (j = 0; j < nrows; j++) {
589887025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
58999566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5900f91af8c7SBarry Smith         k++;
5901a6b2eed2SHong Zhang       }
5902dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5903a6b2eed2SHong Zhang     }
59049566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5905a6b2eed2SHong Zhang 
59066aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5909a6b2eed2SHong Zhang 
591087025532SHong Zhang     /* j-array */
5911a6b2eed2SHong Zhang     /*  post receives of j-array */
5912a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
591387025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59149566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5915a6b2eed2SHong Zhang     }
5916e42f35eeSHong Zhang 
5917e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59183515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5919a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5920e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5921a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
592287025532SHong Zhang       for (j = 0; j < nrows; j++) {
5923d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5924e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59259566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5926ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59279566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5928e42f35eeSHong Zhang         }
592987025532SHong Zhang       }
59309566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
593187025532SHong Zhang     }
593287025532SHong Zhang 
593387025532SHong Zhang     /* recvs and sends of j-array are completed */
59349566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
593587025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5936b7f45c76SHong Zhang     sstartsj = *startsj_s;
59371d79065fSBarry Smith     rstartsj = *startsj_r;
593887025532SHong Zhang     bufa     = *bufa_ptr;
593987025532SHong Zhang     b_oth    = (Mat_SeqAIJ *)(*B_oth)->data;
59409566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5941ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
594287025532SHong Zhang 
594387025532SHong Zhang   /* a-array */
594487025532SHong Zhang   /*  post receives of a-array */
594587025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
594687025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59479566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
594887025532SHong Zhang   }
5949e42f35eeSHong Zhang 
5950e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59513515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
595287025532SHong Zhang   for (i = 0; i < nsends; i++) {
5953e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
595487025532SHong Zhang     bufA  = bufa + sstartsj[i];
595587025532SHong Zhang     for (j = 0; j < nrows; j++) {
5956d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5957e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59589566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5959ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59609566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5961e42f35eeSHong Zhang       }
5962a6b2eed2SHong Zhang     }
59639566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5964a6b2eed2SHong Zhang   }
596587025532SHong Zhang   /* recvs and sends of a-array are completed */
59669566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59679566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
5968a6b2eed2SHong Zhang 
596987025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5970a6b2eed2SHong Zhang     /* put together the new matrix */
59719566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
5972a6b2eed2SHong Zhang 
5973a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5974a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
597587025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
5976e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
5977e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
597887025532SHong Zhang     b_oth->nonew   = 0;
5979a6b2eed2SHong Zhang 
59809566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
5981b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
59829566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
59839566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
5984dea91ad1SHong Zhang     } else {
5985b7f45c76SHong Zhang       *startsj_s = sstartsj;
59861d79065fSBarry Smith       *startsj_r = rstartsj;
598787025532SHong Zhang       *bufa_ptr  = bufa;
598887025532SHong Zhang     }
5989fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
59909566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
5991dea91ad1SHong Zhang   }
59923515ee7fSJunchao Zhang 
59939566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
59949566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
59959566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
59963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5997429d309bSHong Zhang }
5998ccd8e176SBarry Smith 
5999cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
6000cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
6001ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60029779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6003a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6004191b95cbSRichard Tran Mills #endif
6005ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6006cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60075d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6008cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60095d7652ecSHong Zhang #endif
6010d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6011d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6012d24d4204SJose E. Roman #endif
601363c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
601463c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
601563c07aadSStefano Zampini #endif
60163338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60173338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60183338378cSStefano Zampini #endif
6019d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6020d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6021d5e393b6SSuyash Tandon #endif
60223d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60233d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60243d0639e7SStefano Zampini #endif
6025d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60264222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60274222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
602817667f90SBarry Smith 
6029fc4dec0aSBarry Smith /*
6030fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6031fc4dec0aSBarry Smith 
6032fc4dec0aSBarry Smith                n                       p                          p
60332da392ccSBarry Smith         [             ]       [             ]         [                 ]
60342da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60352da392ccSBarry Smith         [             ]       [             ]         [                 ]
6036fc4dec0aSBarry Smith 
6037fc4dec0aSBarry Smith */
6038d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6039d71ae5a4SJacob Faibussowitsch {
6040fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6041fc4dec0aSBarry Smith 
6042fc4dec0aSBarry Smith   PetscFunctionBegin;
60439566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60449566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
60459566063dSJacob Faibussowitsch   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct));
60469566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60479566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60487fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60499566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60509566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6052fc4dec0aSBarry Smith }
6053fc4dec0aSBarry Smith 
6054d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6055d71ae5a4SJacob Faibussowitsch {
60566718818eSStefano Zampini   PetscBool cisdense;
6057fc4dec0aSBarry Smith 
6058fc4dec0aSBarry Smith   PetscFunctionBegin;
605908401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60609566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60619566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6062d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
606348a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60649566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6065f75ecaa4SHong Zhang 
60664222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
60673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6068fc4dec0aSBarry Smith }
6069fc4dec0aSBarry Smith 
6070d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6071d71ae5a4SJacob Faibussowitsch {
60724222ddf1SHong Zhang   Mat_Product *product = C->product;
60734222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6074fc4dec0aSBarry Smith 
6075fc4dec0aSBarry Smith   PetscFunctionBegin;
607620f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
607720f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
60784222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
60794222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
60803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6081fc4dec0aSBarry Smith }
6082fc4dec0aSBarry Smith 
6083d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6084d71ae5a4SJacob Faibussowitsch {
60854222ddf1SHong Zhang   Mat_Product *product = C->product;
60864222ddf1SHong Zhang 
60874222ddf1SHong Zhang   PetscFunctionBegin;
608848a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
60893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60904222ddf1SHong Zhang }
6091394ed5ebSJunchao Zhang 
609227430b45SBarry Smith /*
609327430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6094394ed5ebSJunchao Zhang 
6095394ed5ebSJunchao Zhang   Input Parameters:
6096394ed5ebSJunchao Zhang 
6097651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6098651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6099394ed5ebSJunchao Zhang 
6100158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6101394ed5ebSJunchao Zhang 
6102394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6103394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6104394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6105394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6106394ed5ebSJunchao Zhang 
6107394ed5ebSJunchao Zhang     Similar for Set2.
6108394ed5ebSJunchao Zhang 
6109394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6110394ed5ebSJunchao Zhang 
6111158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6112394ed5ebSJunchao Zhang 
6113394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6114394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6115394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6116394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6117394ed5ebSJunchao Zhang */
6118d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6119d71ae5a4SJacob Faibussowitsch {
6120394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6121394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6122394ed5ebSJunchao Zhang 
6123394ed5ebSJunchao Zhang   PetscFunctionBegin;
61249566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6125394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6126394ed5ebSJunchao Zhang   i[0]        = 0;
6127394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6128394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6129394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6130394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6131394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6132394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6133394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6134394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6135394ed5ebSJunchao Zhang         imap1[t1] = t;
6136394ed5ebSJunchao Zhang         imap2[t2] = t;
6137394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6138394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61399371c9d4SSatish Balay         t1++;
61409371c9d4SSatish Balay         t2++;
61419371c9d4SSatish Balay         t++;
6142394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6143394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6144394ed5ebSJunchao Zhang         imap1[t1] = t;
6145394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61469371c9d4SSatish Balay         t1++;
61479371c9d4SSatish Balay         t++;
6148394ed5ebSJunchao Zhang       } else {
6149394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6150394ed5ebSJunchao Zhang         imap2[t2] = t;
6151394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61529371c9d4SSatish Balay         t2++;
61539371c9d4SSatish Balay         t++;
6154394ed5ebSJunchao Zhang       }
6155394ed5ebSJunchao Zhang     }
6156394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6157394ed5ebSJunchao Zhang     while (b1 < e1) {
6158394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6159394ed5ebSJunchao Zhang       imap1[t1] = t;
6160394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61619371c9d4SSatish Balay       t1++;
61629371c9d4SSatish Balay       t++;
6163394ed5ebSJunchao Zhang     }
6164394ed5ebSJunchao Zhang     while (b2 < e2) {
6165394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6166394ed5ebSJunchao Zhang       imap2[t2] = t;
6167394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
61689371c9d4SSatish Balay       t2++;
61699371c9d4SSatish Balay       t++;
6170394ed5ebSJunchao Zhang     }
6171394ed5ebSJunchao Zhang     i[r + 1] = t;
6172394ed5ebSJunchao Zhang   }
61733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6174394ed5ebSJunchao Zhang }
6175394ed5ebSJunchao Zhang 
617627430b45SBarry Smith /*
617727430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6178394ed5ebSJunchao Zhang 
6179394ed5ebSJunchao Zhang   Input Parameters:
6180394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6181394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6182394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6183394ed5ebSJunchao Zhang 
6184394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6185394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6186394ed5ebSJunchao Zhang 
6187394ed5ebSJunchao Zhang   Output Parameters:
6188394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6189394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6190394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6191394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6192394ed5ebSJunchao Zhang 
6193394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6194158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6195158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6196394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6197394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6198394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6199394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6200394ed5ebSJunchao Zhang 
6201394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6202394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6203394ed5ebSJunchao Zhang 
6204394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6205394ed5ebSJunchao Zhang 
6206158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6207394ed5ebSJunchao Zhang */
6208d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6209d71ae5a4SJacob Faibussowitsch {
6210394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6211394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6212394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6213394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6214394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6215394ed5ebSJunchao Zhang 
6216394ed5ebSJunchao Zhang   PetscFunctionBegin;
62179566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62189566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6219394ed5ebSJunchao Zhang   m = rend - rstart;
6220394ed5ebSJunchao Zhang 
6221651b1cf9SStefano Zampini   /* Skip negative rows */
6222651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62239371c9d4SSatish Balay     if (i[k] >= 0) break;
6224394ed5ebSJunchao Zhang 
6225394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6226394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6227394ed5ebSJunchao Zhang   */
6228394ed5ebSJunchao Zhang   while (k < n) {
6229394ed5ebSJunchao Zhang     row = i[k];
6230394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62319371c9d4SSatish Balay     for (s = k; s < n; s++)
62329371c9d4SSatish Balay       if (i[s] != row) break;
6233651b1cf9SStefano Zampini 
6234651b1cf9SStefano Zampini     /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */
6235394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
6236651b1cf9SStefano Zampini       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT;
623754c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6238394ed5ebSJunchao Zhang     }
62399566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6240158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6241394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6242394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6243394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6244394ed5ebSJunchao Zhang 
6245394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6246394ed5ebSJunchao Zhang     Atot += mid - k;
6247394ed5ebSJunchao Zhang     Btot += s - mid;
6248394ed5ebSJunchao Zhang 
6249651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6250394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6251394ed5ebSJunchao Zhang       col = j[p];
62529371c9d4SSatish Balay       do {
6253651b1cf9SStefano Zampini         j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */
62549371c9d4SSatish Balay         p++;
6255651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6256394ed5ebSJunchao Zhang       Annz++;
6257394ed5ebSJunchao Zhang     }
6258394ed5ebSJunchao Zhang 
6259651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6260394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6261394ed5ebSJunchao Zhang       col = j[p];
6262d71ae5a4SJacob Faibussowitsch       do {
6263d71ae5a4SJacob Faibussowitsch         p++;
6264d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6265394ed5ebSJunchao Zhang       Bnnz++;
6266394ed5ebSJunchao Zhang     }
6267394ed5ebSJunchao Zhang     k = s;
6268394ed5ebSJunchao Zhang   }
6269394ed5ebSJunchao Zhang 
6270394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6271158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6272158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6273158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6274158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6275394ed5ebSJunchao Zhang 
62766aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6277394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6278394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6279394ed5ebSJunchao Zhang     k   = rowBegin[r];
6280394ed5ebSJunchao Zhang     mid = rowMid[r];
6281394ed5ebSJunchao Zhang     s   = rowEnd[r];
62829566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aperm + Atot, perm + k, mid - k));
62839566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bperm + Btot, perm + mid, s - mid));
6284394ed5ebSJunchao Zhang     Atot += mid - k;
6285394ed5ebSJunchao Zhang     Btot += s - mid;
6286394ed5ebSJunchao Zhang 
6287394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6288394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6289394ed5ebSJunchao Zhang       col = j[p];
6290394ed5ebSJunchao Zhang       q   = p;
6291d71ae5a4SJacob Faibussowitsch       do {
6292d71ae5a4SJacob Faibussowitsch         p++;
6293d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6294394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6295394ed5ebSJunchao Zhang       Annz++;
6296394ed5ebSJunchao Zhang     }
6297394ed5ebSJunchao Zhang 
6298394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6299394ed5ebSJunchao Zhang       col = j[p];
6300394ed5ebSJunchao Zhang       q   = p;
6301d71ae5a4SJacob Faibussowitsch       do {
6302d71ae5a4SJacob Faibussowitsch         p++;
6303d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6304394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6305394ed5ebSJunchao Zhang       Bnnz++;
6306394ed5ebSJunchao Zhang     }
6307394ed5ebSJunchao Zhang   }
6308394ed5ebSJunchao Zhang   /* Output */
6309394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6310394ed5ebSJunchao Zhang   *Annz_  = Annz;
6311394ed5ebSJunchao Zhang   *Atot_  = Atot;
6312394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6313394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6314394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6315394ed5ebSJunchao Zhang   *Btot_  = Btot;
6316394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6318394ed5ebSJunchao Zhang }
6319394ed5ebSJunchao Zhang 
632027430b45SBarry Smith /*
632127430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6322158ec288SJunchao Zhang 
6323158ec288SJunchao Zhang   Input Parameters:
6324158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6325158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6326158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6327651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6328158ec288SJunchao Zhang 
6329158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6330158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6331158ec288SJunchao Zhang 
6332158ec288SJunchao Zhang   Example:
6333158ec288SJunchao Zhang     nnz1 = 4
6334158ec288SJunchao Zhang     nnz  = 6
6335158ec288SJunchao Zhang     imap = [1,3,4,5]
6336158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6337158ec288SJunchao Zhang    then,
6338158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6339158ec288SJunchao Zhang */
6340d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6341d71ae5a4SJacob Faibussowitsch {
6342158ec288SJunchao Zhang   PetscCount k, p;
6343158ec288SJunchao Zhang 
6344158ec288SJunchao Zhang   PetscFunctionBegin;
6345158ec288SJunchao Zhang   jmap_new[0] = 0;
6346158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6347158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6348158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6349158ec288SJunchao Zhang   }
6350158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6352158ec288SJunchao Zhang }
6353158ec288SJunchao Zhang 
63542c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data)
63552c4ab24aSJunchao Zhang {
63562c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data;
63572c4ab24aSJunchao Zhang 
63582c4ab24aSJunchao Zhang   PetscFunctionBegin;
63592c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63602c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63612c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63622c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63632c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63642c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63652c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63662c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
63672c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
63682c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
63692c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
63702c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
63712c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
63722c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
63732c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
63742c4ab24aSJunchao Zhang }
63752c4ab24aSJunchao Zhang 
6376d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6377d71ae5a4SJacob Faibussowitsch {
6378394ed5ebSJunchao Zhang   MPI_Comm             comm;
6379394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6380394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6381394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6382394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
63832c4ab24aSJunchao Zhang   PetscContainer       container;
63842c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6385394ed5ebSJunchao Zhang 
6386394ed5ebSJunchao Zhang   PetscFunctionBegin;
63879566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
63889566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6389cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6390eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6391cbc6b225SStefano Zampini #else
63929566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6393cbc6b225SStefano Zampini #endif
63949566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6395cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6396cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6397cbc6b225SStefano Zampini 
63989566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
63999566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
64009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
64019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64059566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64069566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6407394ed5ebSJunchao Zhang 
64086aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6409394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6410394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6411e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6412e8729f6fSJunchao Zhang 
6413e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6414394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6415394ed5ebSJunchao Zhang 
6416394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6417394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6418394ed5ebSJunchao Zhang      will have positive row indices.
6419394ed5ebSJunchao Zhang   */
6420394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
6421394ed5ebSJunchao Zhang     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT;                /* e.g., -2^31, minimal to move them ahead */
6422394ed5ebSJunchao Zhang     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */
6423f7d195e4SLawrence Mitchell     else {
6424f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
6425f7d195e4SLawrence Mitchell       if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */
6426f7d195e4SLawrence Mitchell     }
6427394ed5ebSJunchao Zhang   }
6428394ed5ebSJunchao Zhang 
6429da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64309566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6431651b1cf9SStefano Zampini 
6432651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6433651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64349371c9d4SSatish Balay     if (i1[k] > PETSC_MIN_INT) break;
6435651b1cf9SStefano Zampini   PetscInt i1start = k;
6436651b1cf9SStefano Zampini 
64379566063dSJacob Faibussowitsch   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */
6438394ed5ebSJunchao Zhang   for (; k < rem; k++) i1[k] += PETSC_MAX_INT;                                    /* Revert row indices of local rows*/
6439394ed5ebSJunchao Zhang 
6440394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6441394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6442394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6443394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6444394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6445394ed5ebSJunchao Zhang   const PetscInt *ranges;
6446394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6447394ed5ebSJunchao Zhang 
64489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64499566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6450394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6451394ed5ebSJunchao Zhang     PetscMPIInt owner;
6452394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6453cbc6b225SStefano Zampini 
6454394ed5ebSJunchao Zhang     /* Locate a row range */
6455394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64569566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6457394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6458394ed5ebSJunchao Zhang 
6459394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
64609566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6461394ed5ebSJunchao Zhang 
6462394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6463394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6464394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6465394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6466394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6467cbc6b225SStefano Zampini 
64689566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
64699566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
64709566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
64719566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6472394ed5ebSJunchao Zhang       sendto   = sendto2;
6473394ed5ebSJunchao Zhang       nentries = nentries2;
6474394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6475394ed5ebSJunchao Zhang     }
6476394ed5ebSJunchao Zhang     sendto[nsend]   = owner;
6477394ed5ebSJunchao Zhang     nentries[nsend] = p - k;
64789566063dSJacob Faibussowitsch     PetscCall(PetscCountCast(p - k, &nentries[nsend]));
6479394ed5ebSJunchao Zhang     nsend++;
6480394ed5ebSJunchao Zhang     k = p;
6481394ed5ebSJunchao Zhang   }
6482394ed5ebSJunchao Zhang 
6483394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6484394ed5ebSJunchao Zhang   PetscSF      sf1;
6485394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6486394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6487394ed5ebSJunchao Zhang   PetscInt    *offsets;
6488394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6489394ed5ebSJunchao Zhang 
64909566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
64919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
64929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6493394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6494394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6495394ed5ebSJunchao Zhang     iremote[k].index = 0;
6496394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
649754c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6498394ed5ebSJunchao Zhang   }
64999566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
65009566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
65019566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
65029566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
650363a3b9bcSJacob Faibussowitsch   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT "", nleaves2, n1 - rem);
6504394ed5ebSJunchao Zhang 
6505394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6506394ed5ebSJunchao Zhang   PetscSF sf2;
6507394ed5ebSJunchao Zhang   nroots  = nroots2;
6508394ed5ebSJunchao Zhang   nleaves = nleaves2;
65099566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65109566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6512394ed5ebSJunchao Zhang   p = 0;
6513394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
651454c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6515394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6516394ed5ebSJunchao Zhang       iremote[p].rank  = sendto[k];
6517394ed5ebSJunchao Zhang       iremote[p].index = offsets[k] + q;
6518394ed5ebSJunchao Zhang     }
6519394ed5ebSJunchao Zhang   }
65209566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6521394ed5ebSJunchao Zhang 
6522394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6523394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6524394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
65269566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1 + rem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
65279566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1 + rem, i2, MPI_REPLACE));
65289566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1 + rem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
65299566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1 + rem, j2, MPI_REPLACE));
6530394ed5ebSJunchao Zhang 
65319566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65329566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6533394ed5ebSJunchao Zhang 
6534394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6535394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65369566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6537394ed5ebSJunchao Zhang 
6538651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6539651b1cf9SStefano Zampini   PetscCount *Cperm1;
6540651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6541651b1cf9SStefano Zampini   PetscCall(PetscArraycpy(Cperm1, perm1 + rem, nleaves));
6542651b1cf9SStefano Zampini 
6543651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6544651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6545651b1cf9SStefano Zampini   PetscBool   hypre;
6546651b1cf9SStefano Zampini   const char *name;
6547651b1cf9SStefano Zampini   PetscCall(PetscObjectGetName((PetscObject)mat, &name));
6548651b1cf9SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre));
6549651b1cf9SStefano Zampini   if (hypre) {
6550651b1cf9SStefano Zampini     PetscInt *minj;
6551651b1cf9SStefano Zampini     PetscBT   hasdiag;
6552651b1cf9SStefano Zampini 
6553651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6554651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
6555651b1cf9SStefano Zampini     for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT;
6556651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6557651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6558651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6559651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6560651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6561651b1cf9SStefano Zampini     }
6562651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6563651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6564651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6565651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6566651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6567651b1cf9SStefano Zampini     }
6568651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6569651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6570651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6571651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6572651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6573651b1cf9SStefano Zampini     }
6574651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6575651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6576651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6577651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6578651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6579651b1cf9SStefano Zampini     }
6580651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6581651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6582651b1cf9SStefano Zampini   }
6583651b1cf9SStefano Zampini 
6584651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6585651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6586651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6587651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6588394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6589394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6590394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6591394ed5ebSJunchao Zhang 
6592651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
65939566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6594651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
65959566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6596394ed5ebSJunchao Zhang 
6597394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6598394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6599394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6600394ed5ebSJunchao Zhang 
66019566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6605394ed5ebSJunchao Zhang 
6606394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6607158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6608158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6609158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6610158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6611394ed5ebSJunchao Zhang 
66129566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66139566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6614158ec288SJunchao Zhang 
6615158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6616158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6617158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6618158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6619158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6620158ec288SJunchao Zhang 
6621158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6622158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6623158ec288SJunchao Zhang 
6624158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6625158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6626158ec288SJunchao Zhang 
6627158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6628158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6629158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6630158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66319566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66329566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6633e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66349566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6635394ed5ebSJunchao Zhang 
6636158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6637158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6638158ec288SJunchao Zhang 
6639394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6640394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6641394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66429566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66439566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66449566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6645394ed5ebSJunchao Zhang     Aj = Aj_new;
6646394ed5ebSJunchao Zhang   }
6647394ed5ebSJunchao Zhang 
6648394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6649394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66509566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66519566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66529566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6653394ed5ebSJunchao Zhang     Bj = Bj_new;
6654394ed5ebSJunchao Zhang   }
6655394ed5ebSJunchao Zhang 
6656cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6657394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6658cbc6b225SStefano Zampini   MatType          rtype;
6659394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6660cf8ba265SJunchao Zhang   PetscObjectState state;
66619566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66629566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6663394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
66649371c9d4SSatish Balay   if (cstart) {
66659371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
66669371c9d4SSatish Balay   }
66679566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mpiaij->A));
66689566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mpiaij->B));
66699566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
66709566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
66719566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
66729566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
66735bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6674cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6675cf8ba265SJunchao Zhang   PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6676cbc6b225SStefano Zampini 
6677394ed5ebSJunchao Zhang   a               = (Mat_SeqAIJ *)mpiaij->A->data;
6678394ed5ebSJunchao Zhang   b               = (Mat_SeqAIJ *)mpiaij->B->data;
6679394ed5ebSJunchao Zhang   a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */
6680394ed5ebSJunchao Zhang   a->free_a = b->free_a = PETSC_TRUE;
6681394ed5ebSJunchao Zhang   a->free_ij = b->free_ij = PETSC_TRUE;
6682394ed5ebSJunchao Zhang 
6683cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
66849566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
66859566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
66869566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
66879566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6688cbc6b225SStefano Zampini 
66892c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
66902c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
66912c4ab24aSJunchao Zhang   coo->n       = coo_n;
66922c4ab24aSJunchao Zhang   coo->sf      = sf2;
66932c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
66942c4ab24aSJunchao Zhang   coo->recvlen = nroots;
66952c4ab24aSJunchao Zhang   coo->Annz    = Annz;
66962c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
66972c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
66982c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
66992c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67002c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67012c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67022c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67032c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67042c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67052c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67062c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67072c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67082c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67092c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67102c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67112c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67122c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67132c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67142c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67152c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67162c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67172c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
67182c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ));
67192c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67202c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6722394ed5ebSJunchao Zhang }
6723394ed5ebSJunchao Zhang 
6724d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6725d71ae5a4SJacob Faibussowitsch {
6726394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6727394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6728394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67292c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67302c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67312c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67322c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67332c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67342c4ab24aSJunchao Zhang   PetscContainer       container;
67352c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6736394ed5ebSJunchao Zhang 
6737394ed5ebSJunchao Zhang   PetscFunctionBegin;
67382c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67392c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67402c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67412c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67422c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67432c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67442c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67452c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67462c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67472c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67482c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67492c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67502c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67512c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67522c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67532c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
67542c4ab24aSJunchao Zhang 
67559566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
67569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6757394ed5ebSJunchao Zhang 
6758394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
67592c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6760394ed5ebSJunchao Zhang 
6761394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
67622c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6763394ed5ebSJunchao Zhang   /* Add local entries to A and B */
67642c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6765da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6766158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6767158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6768394ed5ebSJunchao Zhang   }
67692c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6770158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6771158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6772158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6773394ed5ebSJunchao Zhang   }
67742c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6775394ed5ebSJunchao Zhang 
6776394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
67772c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6778394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6779394ed5ebSJunchao Zhang   }
67802c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6781394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6782394ed5ebSJunchao Zhang   }
67839566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
67849566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
67853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6786394ed5ebSJunchao Zhang }
6787394ed5ebSJunchao Zhang 
6788ccd8e176SBarry Smith /*MC
6789ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6790ccd8e176SBarry Smith 
6791ccd8e176SBarry Smith    Options Database Keys:
679211a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6793ccd8e176SBarry Smith 
6794ccd8e176SBarry Smith    Level: beginner
67950cd7f59aSBarry Smith 
67960cd7f59aSBarry Smith    Notes:
67972ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
67980cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
67990cd7f59aSBarry Smith     in the matrix
68000cd7f59aSBarry Smith 
680111a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
680211a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6803ccd8e176SBarry Smith 
68041cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6805ccd8e176SBarry Smith M*/
6806d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6807d71ae5a4SJacob Faibussowitsch {
6808ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6809ccd8e176SBarry Smith   PetscMPIInt size;
6810ccd8e176SBarry Smith 
6811ccd8e176SBarry Smith   PetscFunctionBegin;
68129566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68132205254eSKarl Rupp 
68144dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6815ccd8e176SBarry Smith   B->data       = (void *)b;
6816aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6817ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6818ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6819ccd8e176SBarry Smith   b->size       = size;
68202205254eSKarl Rupp 
68219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6822ccd8e176SBarry Smith 
6823ccd8e176SBarry Smith   /* build cache for off array entries formed */
68249566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68252205254eSKarl Rupp 
6826ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6827f4259b30SLisandro Dalcin   b->colmap      = NULL;
6828f4259b30SLisandro Dalcin   b->garray      = NULL;
6829ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6830ccd8e176SBarry Smith 
6831ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68320298fd71SBarry Smith   b->lvec  = NULL;
68330298fd71SBarry Smith   b->Mvctx = NULL;
6834ccd8e176SBarry Smith 
6835ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6836f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6837f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6838ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6839ccd8e176SBarry Smith 
6840f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68410298fd71SBarry Smith   b->spptr = NULL;
6842f60c3dc2SHong Zhang 
68439566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68469566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
68499566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68519566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68529566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68533d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
68549566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
68553d0639e7SStefano Zampini #endif
6856d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6857d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6858d5e393b6SSuyash Tandon #endif
68593d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
68609566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
68613d0639e7SStefano Zampini #endif
68629779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
68639566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6864191b95cbSRichard Tran Mills #endif
68659566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
68669566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
68679566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
68689566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
68695d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68709566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
68715d7652ecSHong Zhang #endif
6872d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
68739566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6874d24d4204SJose E. Roman #endif
68759566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
68769566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
68773dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
68789566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
68799566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
68803dad0653Sstefano_zampini #endif
68819566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
68829566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
68839566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
68849566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
68859566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
68863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6887ccd8e176SBarry Smith }
688881824310SBarry Smith 
6889cce60c4dSBarry Smith /*@C
689011a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
689103bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
689203bfb495SBarry Smith 
6893d083f849SBarry Smith   Collective
689403bfb495SBarry Smith 
689503bfb495SBarry Smith   Input Parameters:
689603bfb495SBarry Smith + comm - MPI communicator
689711a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
689803bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
689911a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
69002ef1f0ffSBarry Smith        calculated if `N` is given) For square matrices `n` is almost always `m`.
69012ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69022ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6903483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
690404ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
690503bfb495SBarry Smith . a    - matrix values
6906483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69072ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
690803bfb495SBarry Smith - oa   - matrix values
690903bfb495SBarry Smith 
691003bfb495SBarry Smith   Output Parameter:
691103bfb495SBarry Smith . mat - the matrix
691203bfb495SBarry Smith 
691303bfb495SBarry Smith   Level: advanced
691403bfb495SBarry Smith 
691503bfb495SBarry Smith   Notes:
69162ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc. The user
6917292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
691803bfb495SBarry Smith 
69192ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
692003bfb495SBarry Smith 
69212ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
692203bfb495SBarry Smith 
69237b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69247b55108eSBarry Smith 
6925dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6926dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6927dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6928dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
692911a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6930dca341c0SJed Brown   communication if it is known that only local entries will be set.
693103bfb495SBarry Smith 
69321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6933db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69342b26979fSBarry Smith @*/
6935d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6936d71ae5a4SJacob Faibussowitsch {
693703bfb495SBarry Smith   Mat_MPIAIJ *maij;
693803bfb495SBarry Smith 
693903bfb495SBarry Smith   PetscFunctionBegin;
694008401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6941aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6942aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69439566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69449566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69459566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
694603bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69472205254eSKarl Rupp 
69488d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
694903bfb495SBarry Smith 
69509566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69519566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
695203bfb495SBarry Smith 
69539566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
69549566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
695503bfb495SBarry Smith 
69569566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
69579566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
69589566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
69599566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
69609566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
69613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
696203bfb495SBarry Smith }
696303bfb495SBarry Smith 
69644e84afc0SStefano Zampini typedef struct {
69654e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
69664e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
69674e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
69684e84afc0SStefano Zampini 
69694e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
69704e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
69714e84afc0SStefano Zampini   PetscScalar *bufa;
69724e84afc0SStefano Zampini   Mat          P_oth;
69734e84afc0SStefano Zampini 
69744e84afc0SStefano Zampini   /* may take advantage of merging product->B */
6975ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
69764e84afc0SStefano Zampini 
6977ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
69784e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
69794e84afc0SStefano Zampini      of the temporary storage */
69804e84afc0SStefano Zampini   PetscBool reusesym;
69814e84afc0SStefano Zampini 
69824e84afc0SStefano Zampini   /* support for COO values insertion */
6983ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
6984ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
6985ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
6986ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
6987c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
6988c215019aSStefano Zampini   PetscMemType mtype;
69894e84afc0SStefano Zampini 
69904e84afc0SStefano Zampini   /* customization */
69914e84afc0SStefano Zampini   PetscBool abmerge;
6992abb89eb1SStefano Zampini   PetscBool P_oth_bind;
69934e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
69944e84afc0SStefano Zampini 
6995ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
6996d71ae5a4SJacob Faibussowitsch {
69974e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
69984e84afc0SStefano Zampini   PetscInt             i;
69994e84afc0SStefano Zampini 
70004e84afc0SStefano Zampini   PetscFunctionBegin;
70019566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70029566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70039566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70049566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70059566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70069566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70079566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
700848a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70099566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70109566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70119566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70129566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70139566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70149566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70164e84afc0SStefano Zampini }
70174e84afc0SStefano Zampini 
7018fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7019fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7020fff043a9SJunchao Zhang  */
7021d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7022d71ae5a4SJacob Faibussowitsch {
7023c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7024c215019aSStefano Zampini 
7025c215019aSStefano Zampini   PetscFunctionBegin;
70269566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7027c215019aSStefano Zampini   if (f) {
70289566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7029c215019aSStefano Zampini   } else {
7030c215019aSStefano Zampini     const PetscScalar *vv;
7031c215019aSStefano Zampini 
70329566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7033c215019aSStefano Zampini     if (n && idx) {
7034c215019aSStefano Zampini       PetscScalar    *w  = v;
7035c215019aSStefano Zampini       const PetscInt *oi = idx;
7036c215019aSStefano Zampini       PetscInt        j;
7037c215019aSStefano Zampini 
7038c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7039c215019aSStefano Zampini     } else {
70409566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7041c215019aSStefano Zampini     }
70429566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7043c215019aSStefano Zampini   }
70443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7045c215019aSStefano Zampini }
7046c215019aSStefano Zampini 
7047d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7048d71ae5a4SJacob Faibussowitsch {
70494e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70504e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70514e84afc0SStefano Zampini 
70524e84afc0SStefano Zampini   PetscFunctionBegin;
70534e84afc0SStefano Zampini   MatCheckProduct(C, 1);
705428b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
70554e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
70564e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
705748a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
705848a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
70594e84afc0SStefano Zampini   }
70604e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7061abb89eb1SStefano Zampini 
7062abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
706308401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
70649566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7065abb89eb1SStefano Zampini   }
70664e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
70674e84afc0SStefano Zampini     PetscInt noff = mmdata->off[i + 1] - mmdata->off[i];
70684e84afc0SStefano Zampini 
70694e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
70704e84afc0SStefano Zampini     if (noff) {
7071c215019aSStefano Zampini       PetscInt nown = mmdata->own[i + 1] - mmdata->own[i];
7072c215019aSStefano Zampini 
70739566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
70749566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
70754e84afc0SStefano Zampini       n_o += noff;
70764e84afc0SStefano Zampini       n_d += nown;
70774e84afc0SStefano Zampini     } else {
7078c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7079c215019aSStefano Zampini 
70809566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
70814e84afc0SStefano Zampini       n_d += mm->nz;
70824e84afc0SStefano Zampini     }
70834e84afc0SStefano Zampini   }
7084c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
70859566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
70869566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
70874e84afc0SStefano Zampini   }
70889566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
70893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70904e84afc0SStefano Zampini }
70914e84afc0SStefano Zampini 
70924e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
70934e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7094d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7095d71ae5a4SJacob Faibussowitsch {
70964e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7097ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
70984e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
70994e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71004e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71014e84afc0SStefano Zampini   IS                     glob      = NULL;
71024e84afc0SStefano Zampini   const char            *prefix;
71034e84afc0SStefano Zampini   char                   pprefix[256];
71044e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
710582a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
710682a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7107ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7108ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7109ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7110ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7111ddea5d60SJunchao Zhang 
71124e84afc0SStefano Zampini   MatProductType ptype;
7113d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71144e84afc0SStefano Zampini   PetscMPIInt    size;
71154e84afc0SStefano Zampini 
71164e84afc0SStefano Zampini   PetscFunctionBegin;
71174e84afc0SStefano Zampini   MatCheckProduct(C, 1);
711828b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71194e84afc0SStefano Zampini   ptype = product->type;
7120b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7121fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7122fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7123fa046f9fSJunchao Zhang   }
71244e84afc0SStefano Zampini   switch (ptype) {
71254e84afc0SStefano Zampini   case MATPRODUCT_AB:
71264e84afc0SStefano Zampini     A          = product->A;
71274e84afc0SStefano Zampini     P          = product->B;
71284e84afc0SStefano Zampini     m          = A->rmap->n;
71294e84afc0SStefano Zampini     n          = P->cmap->n;
71304e84afc0SStefano Zampini     M          = A->rmap->N;
71314e84afc0SStefano Zampini     N          = P->cmap->N;
7132ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71334e84afc0SStefano Zampini     break;
71344e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71354e84afc0SStefano Zampini     P          = product->A;
71364e84afc0SStefano Zampini     A          = product->B;
71374e84afc0SStefano Zampini     m          = P->cmap->n;
71384e84afc0SStefano Zampini     n          = A->cmap->n;
71394e84afc0SStefano Zampini     M          = P->cmap->N;
71404e84afc0SStefano Zampini     N          = A->cmap->N;
71414e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71424e84afc0SStefano Zampini     break;
71434e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71444e84afc0SStefano Zampini     A          = product->A;
71454e84afc0SStefano Zampini     P          = product->B;
71464e84afc0SStefano Zampini     m          = P->cmap->n;
71474e84afc0SStefano Zampini     n          = P->cmap->n;
71484e84afc0SStefano Zampini     M          = P->cmap->N;
71494e84afc0SStefano Zampini     N          = P->cmap->N;
71504e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71514e84afc0SStefano Zampini     break;
7152d71ae5a4SJacob Faibussowitsch   default:
7153d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
71544e84afc0SStefano Zampini   }
71559566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
71564e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
71574e84afc0SStefano Zampini 
71584e84afc0SStefano Zampini   /* defaults */
71594e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
71604e84afc0SStefano Zampini     mp[i]    = NULL;
71614e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
71624e84afc0SStefano Zampini     rmapt[i] = -1;
71634e84afc0SStefano Zampini     cmapt[i] = -1;
71644e84afc0SStefano Zampini     rmapa[i] = NULL;
71654e84afc0SStefano Zampini     cmapa[i] = NULL;
71664e84afc0SStefano Zampini   }
71674e84afc0SStefano Zampini 
71684e84afc0SStefano Zampini   /* customization */
71699566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
71704e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
71714e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
71724e84afc0SStefano Zampini     if (product->api_user) {
7173d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
71749566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71759566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7176d0609cedSBarry Smith       PetscOptionsEnd();
71774e84afc0SStefano Zampini     } else {
7178d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
71799566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71809566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7181d0609cedSBarry Smith       PetscOptionsEnd();
7182abb89eb1SStefano Zampini     }
7183abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7184abb89eb1SStefano Zampini     if (product->api_user) {
7185d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
71869566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7187d0609cedSBarry Smith       PetscOptionsEnd();
7188abb89eb1SStefano Zampini     } else {
7189d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
71909566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7191d0609cedSBarry Smith       PetscOptionsEnd();
71924e84afc0SStefano Zampini     }
71934e84afc0SStefano Zampini   }
71944e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
71954e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
71969566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
71979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
71989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
71999566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72009566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7201ddea5d60SJunchao Zhang 
7202ddea5d60SJunchao Zhang   cp = 0;
72034e84afc0SStefano Zampini   switch (ptype) {
72044e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72059566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72064e84afc0SStefano Zampini 
7207ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7208ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72094e84afc0SStefano Zampini       /* P is product->B */
72109566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72119566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72129566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72139566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72149566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72159566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72169566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72174e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72189566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72199566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72209566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72214e84afc0SStefano Zampini       rmapt[cp] = 1;
72224e84afc0SStefano Zampini       cmapt[cp] = 2;
72234e84afc0SStefano Zampini       cmapa[cp] = globidx;
72244e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72254e84afc0SStefano Zampini       cp++;
7226ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72279566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72289566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72299566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72309566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72319566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72329566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72334e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72349566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72359566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72364e84afc0SStefano Zampini       rmapt[cp] = 1;
72374e84afc0SStefano Zampini       cmapt[cp] = 1;
72384e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72394e84afc0SStefano Zampini       cp++;
72409566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72419566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72429566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72439566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72449566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72459566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72464e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72479566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72489566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72494e84afc0SStefano Zampini       rmapt[cp] = 1;
72504e84afc0SStefano Zampini       cmapt[cp] = 2;
72514e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72524e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72534e84afc0SStefano Zampini       cp++;
72544e84afc0SStefano Zampini     }
7255ddea5d60SJunchao Zhang 
7256ddea5d60SJunchao Zhang     /* A_off * P_other */
72574e84afc0SStefano Zampini     if (mmdata->P_oth) {
72589566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
72599566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
72609566063dSJacob Faibussowitsch       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name));
72619566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
72629566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
72639566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72649566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72659566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72669566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72679566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72684e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72699566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72709566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72714e84afc0SStefano Zampini       rmapt[cp] = 1;
72724e84afc0SStefano Zampini       cmapt[cp] = 2;
72734e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
72744e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72754e84afc0SStefano Zampini       cp++;
72764e84afc0SStefano Zampini     }
72774e84afc0SStefano Zampini     break;
7278ddea5d60SJunchao Zhang 
72794e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
72804e84afc0SStefano Zampini     /* A is product->B */
72819566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7282ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
72839566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
72849566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
72859566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72869566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72879566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72889566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72894e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72909566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72919566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72929566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72934e84afc0SStefano Zampini       rmapt[cp] = 2;
72944e84afc0SStefano Zampini       rmapa[cp] = globidx;
72954e84afc0SStefano Zampini       cmapt[cp] = 2;
72964e84afc0SStefano Zampini       cmapa[cp] = globidx;
72974e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72984e84afc0SStefano Zampini       cp++;
72994e84afc0SStefano Zampini     } else {
73009566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73019566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73029566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73039566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73049566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73059566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73064e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73079566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73089566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73099566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73104e84afc0SStefano Zampini       rmapt[cp] = 1;
73114e84afc0SStefano Zampini       cmapt[cp] = 2;
73124e84afc0SStefano Zampini       cmapa[cp] = globidx;
73134e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73144e84afc0SStefano Zampini       cp++;
73159566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73169566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73179566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73189566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73199566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73209566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73214e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73229566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73239566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73244e84afc0SStefano Zampini       rmapt[cp] = 2;
73254e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73264e84afc0SStefano Zampini       cmapt[cp] = 2;
73274e84afc0SStefano Zampini       cmapa[cp] = globidx;
73284e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73294e84afc0SStefano Zampini       cp++;
73304e84afc0SStefano Zampini     }
73314e84afc0SStefano Zampini     break;
73324e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73339566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73344e84afc0SStefano Zampini     /* P is product->B */
73359566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73369566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73379566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73389566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73399566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73409566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73419566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73424e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73439566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73449566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73459566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73464e84afc0SStefano Zampini     rmapt[cp] = 2;
73474e84afc0SStefano Zampini     rmapa[cp] = globidx;
73484e84afc0SStefano Zampini     cmapt[cp] = 2;
73494e84afc0SStefano Zampini     cmapa[cp] = globidx;
73504e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73514e84afc0SStefano Zampini     cp++;
73524e84afc0SStefano Zampini     if (mmdata->P_oth) {
73539566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
73549566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
73559566063dSJacob Faibussowitsch       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)(a->B))->type_name));
73569566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73579566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73589566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73599566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73609566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73619566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73629566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73634e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73649566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73659566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73664e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
73674e84afc0SStefano Zampini       cp++;
73689566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
73699566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73709566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73719566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73729566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73739566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73744e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73759566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73769566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73774e84afc0SStefano Zampini       rmapt[cp] = 2;
73784e84afc0SStefano Zampini       rmapa[cp] = globidx;
73794e84afc0SStefano Zampini       cmapt[cp] = 2;
73804e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73814e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73824e84afc0SStefano Zampini       cp++;
73834e84afc0SStefano Zampini     }
73844e84afc0SStefano Zampini     break;
7385d71ae5a4SJacob Faibussowitsch   default:
7386d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
73874e84afc0SStefano Zampini   }
73884e84afc0SStefano Zampini   /* sanity check */
73899371c9d4SSatish Balay   if (size > 1)
73909371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
73914e84afc0SStefano Zampini 
73929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7393ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7394ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7395ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7396ddea5d60SJunchao Zhang   }
73974e84afc0SStefano Zampini   mmdata->cp             = cp;
73984e84afc0SStefano Zampini   C->product->data       = mmdata;
73994e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74004e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74014e84afc0SStefano Zampini 
7402c215019aSStefano Zampini   /* memory type */
7403c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74049566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7405d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74069566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7407c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7408d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74093214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7410c215019aSStefano Zampini 
74114e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7412ddea5d60SJunchao Zhang 
7413ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7414ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7415ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7416ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7417ddea5d60SJunchao Zhang   */
74184e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74194e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74204e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7421ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74224e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74234e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74244e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74254e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74264e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74274e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74284e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74294e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7430ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7431ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74324e84afc0SStefano Zampini       }
74334e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74344e84afc0SStefano Zampini   }
7435ddea5d60SJunchao Zhang 
7436ddea5d60SJunchao Zhang   /*
7437ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7438ddea5d60SJunchao Zhang 
7439ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7440ddea5d60SJunchao Zhang 
7441d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7442ddea5d60SJunchao Zhang 
7443ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7444ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7445ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7446ddea5d60SJunchao Zhang 
7447ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7448da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7449ddea5d60SJunchao Zhang   */
74509566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74519566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7452ddea5d60SJunchao Zhang 
7453ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7454ddea5d60SJunchao Zhang   if (hasoffproc) {
74554e84afc0SStefano Zampini     PetscSF  msf;
74564e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
74574e84afc0SStefano Zampini 
74589566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
74599566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
74609566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7461ddea5d60SJunchao Zhang 
74624e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
74634e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
74644e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
74654e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7466ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
74674e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
74684e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
74694e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
74704e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
74714e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
74724e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
74734e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
74744e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
74754e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
74764e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
74774e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
74784e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
74794e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7480ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
74814e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
74824e84afc0SStefano Zampini               *coi++    = gr;
74834e84afc0SStefano Zampini               *idxoff++ = j;
74844e84afc0SStefano Zampini             }
74854e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
74864e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
74874e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
74884e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
74894e84afc0SStefano Zampini             } else { /* offdiag */
74904e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
74914e84afc0SStefano Zampini             }
74924e84afc0SStefano Zampini             ncoo_o += nz;
7493ddea5d60SJunchao Zhang           } else { /* this is a local row */
74944e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
74954e84afc0SStefano Zampini           }
74964e84afc0SStefano Zampini         }
74974e84afc0SStefano Zampini       }
74984e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
74994e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75004e84afc0SStefano Zampini     }
75014e84afc0SStefano Zampini 
75029566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75039566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75049566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75059566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75064e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75079566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75089566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75099566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75109566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75119566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75129566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7513ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75149566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75154e84afc0SStefano Zampini     coo_i = coo_i2;
75164e84afc0SStefano Zampini     coo_j = coo_j2;
75174e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75184e84afc0SStefano Zampini     ncoo = ncoo_d;
75199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7520c215019aSStefano Zampini 
75219566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75229566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75239566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75244e84afc0SStefano Zampini   }
7525c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75264e84afc0SStefano Zampini 
7527ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75284e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75294e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75304e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75314e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75324e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75334e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75344e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75354e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75364e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75374e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75384e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75394e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75404e84afc0SStefano Zampini 
75414e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7542ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7543ddea5d60SJunchao Zhang       /* fill coo_i */
75444e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75454e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75464e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75474e84afc0SStefano Zampini       }
7548ddea5d60SJunchao Zhang       /* fill coo_j */
7549ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75509566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7551ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7552ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7553ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
75544e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
75554e84afc0SStefano Zampini       }
75564e84afc0SStefano Zampini       ncoo_d += mm->nz;
7557ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
75584e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75594e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
75604e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
75614e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7562ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
75634e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7564ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
75654e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
75664e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75674e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7568ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
75694e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75704e84afc0SStefano Zampini           }
75714e84afc0SStefano Zampini           ncoo_d += nz;
75724e84afc0SStefano Zampini         }
75734e84afc0SStefano Zampini       }
75744e84afc0SStefano Zampini     }
75754e84afc0SStefano Zampini   }
757648a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
75779566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
757848a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
75799566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7580ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
75819566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
75824e84afc0SStefano Zampini 
75834e84afc0SStefano Zampini   /* preallocate with COO data */
75849566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
75859566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
75863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
75874e84afc0SStefano Zampini }
75884e84afc0SStefano Zampini 
7589d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7590d71ae5a4SJacob Faibussowitsch {
75914e84afc0SStefano Zampini   Mat_Product *product = mat->product;
75924e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
75934e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7594abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
75954e84afc0SStefano Zampini #else
75964e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
75974e84afc0SStefano Zampini #endif
75984e84afc0SStefano Zampini 
75994e84afc0SStefano Zampini   PetscFunctionBegin;
76004e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76014e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
760248a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
760365e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7604abb89eb1SStefano Zampini     switch (product->type) {
7605abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7606abb89eb1SStefano Zampini       if (product->api_user) {
7607d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76089566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7609d0609cedSBarry Smith         PetscOptionsEnd();
7610abb89eb1SStefano Zampini       } else {
7611d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76129566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7613d0609cedSBarry Smith         PetscOptionsEnd();
7614abb89eb1SStefano Zampini       }
7615abb89eb1SStefano Zampini       break;
7616abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7617abb89eb1SStefano Zampini       if (product->api_user) {
7618d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76199566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7620d0609cedSBarry Smith         PetscOptionsEnd();
7621abb89eb1SStefano Zampini       } else {
7622d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76239566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7624d0609cedSBarry Smith         PetscOptionsEnd();
7625abb89eb1SStefano Zampini       }
7626abb89eb1SStefano Zampini       break;
7627abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7628abb89eb1SStefano Zampini       if (product->api_user) {
7629d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76309566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7631d0609cedSBarry Smith         PetscOptionsEnd();
7632abb89eb1SStefano Zampini       } else {
7633d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76349566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7635d0609cedSBarry Smith         PetscOptionsEnd();
7636abb89eb1SStefano Zampini       }
7637abb89eb1SStefano Zampini       break;
7638d71ae5a4SJacob Faibussowitsch     default:
7639d71ae5a4SJacob Faibussowitsch       break;
7640abb89eb1SStefano Zampini     }
7641abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7642abb89eb1SStefano Zampini   }
76434e84afc0SStefano Zampini #endif
76444e84afc0SStefano Zampini   if (match) {
76454e84afc0SStefano Zampini     switch (product->type) {
76464e84afc0SStefano Zampini     case MATPRODUCT_AB:
76474e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7648d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7649d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7650d71ae5a4SJacob Faibussowitsch       break;
7651d71ae5a4SJacob Faibussowitsch     default:
7652d71ae5a4SJacob Faibussowitsch       break;
76534e84afc0SStefano Zampini     }
76544e84afc0SStefano Zampini   }
76554e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
76569566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
76573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
765881824310SBarry Smith }
765998921bdaSJacob Faibussowitsch 
766098921bdaSJacob Faibussowitsch /*
766172833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
766272833a62Smarkadams4 
766372833a62Smarkadams4    n - the number of block indices in cc[]
766472833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
766572833a62Smarkadams4 */
7666d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7667d71ae5a4SJacob Faibussowitsch {
766872833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
766972833a62Smarkadams4   const PetscInt *idx;
767072833a62Smarkadams4 
767172833a62Smarkadams4   PetscFunctionBegin;
767272833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
767372833a62Smarkadams4   if (nidx) {
767472833a62Smarkadams4     cnt     = 0;
767572833a62Smarkadams4     cc[cnt] = idx[0] / bs;
767672833a62Smarkadams4     for (j = 1; j < nidx; j++) {
767772833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
767872833a62Smarkadams4     }
767972833a62Smarkadams4   }
768072833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
768172833a62Smarkadams4   *n = cnt + 1;
76823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
768372833a62Smarkadams4 }
768472833a62Smarkadams4 
768572833a62Smarkadams4 /*
768672833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
768772833a62Smarkadams4 
768872833a62Smarkadams4     ncollapsed - the number of block indices
768972833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
769072833a62Smarkadams4 */
7691d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7692d71ae5a4SJacob Faibussowitsch {
769372833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
769472833a62Smarkadams4 
769572833a62Smarkadams4   PetscFunctionBegin;
769672833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
769772833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
769872833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
769972833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77009371c9d4SSatish Balay     cprevtmp = cprev;
77019371c9d4SSatish Balay     cprev    = merged;
77029371c9d4SSatish Balay     merged   = cprevtmp;
770372833a62Smarkadams4   }
770472833a62Smarkadams4   *ncollapsed = nprev;
770572833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
770772833a62Smarkadams4 }
770872833a62Smarkadams4 
77092d776b49SBarry Smith /*
771072833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
771172833a62Smarkadams4 
771272833a62Smarkadams4  Input Parameter:
771372833a62Smarkadams4  . Amat - matrix
771472833a62Smarkadams4  - symmetrize - make the result symmetric
771572833a62Smarkadams4  + scale - scale with diagonal
771672833a62Smarkadams4 
771772833a62Smarkadams4  Output Parameter:
771872833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
771972833a62Smarkadams4 
772072833a62Smarkadams4 */
77212d776b49SBarry Smith PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, Mat *a_Gmat)
7722d71ae5a4SJacob Faibussowitsch {
772372833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
772472833a62Smarkadams4   MPI_Comm  comm;
772572833a62Smarkadams4   Mat       Gmat;
772672833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
772772833a62Smarkadams4   Mat       a, b, c;
772872833a62Smarkadams4   MatType   jtype;
772972833a62Smarkadams4 
773072833a62Smarkadams4   PetscFunctionBegin;
773172833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
773272833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
773372833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
773472833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
773572833a62Smarkadams4   nloc = (Iend - Istart) / bs;
773672833a62Smarkadams4 
773772833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
773872833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
773972833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
774072833a62Smarkadams4 
774172833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
774272833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
774372833a62Smarkadams4      implementation */
774472833a62Smarkadams4   if (bs > 1) {
774572833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
774672833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
774772833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
774872833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
774972833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
775072833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
775172833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77522cf69117Smarkadams4       MatScalar *aa, val, *AA;
77532cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
77549371c9d4SSatish Balay       if (isseqaij) {
77559371c9d4SSatish Balay         a = Amat;
77569371c9d4SSatish Balay         b = NULL;
77579371c9d4SSatish Balay       } else {
775872833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
77599371c9d4SSatish Balay         a             = d->A;
77609371c9d4SSatish Balay         b             = d->B;
776172833a62Smarkadams4       }
776272833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
776372833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
776472833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
77652cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
776659ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
776759ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
776859ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
776959ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
777059ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
777172833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
777259ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
777359ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
777459ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
777559ee9f9fSPierre Jolivet             else {
777659ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
777759ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
777859ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
777972833a62Smarkadams4               }
778059ee9f9fSPierre Jolivet             }
778159ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
778259ee9f9fSPierre Jolivet           }
778359ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
778472833a62Smarkadams4           if (!ok) {
778572833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
778659ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
778772833a62Smarkadams4             goto old_bs;
778872833a62Smarkadams4           }
778972833a62Smarkadams4         }
779072833a62Smarkadams4       }
779172833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
779272833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
779372833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
77942cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
779572833a62Smarkadams4       // diag
779672833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
779772833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
779872833a62Smarkadams4         ai               = aseq->i;
779972833a62Smarkadams4         n                = ai[brow + 1] - ai[brow];
780072833a62Smarkadams4         aj               = aseq->j + ai[brow];
780172833a62Smarkadams4         for (int k = 0; k < n; k += bs) {        // block columns
780272833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
780372833a62Smarkadams4           val        = 0;
780472833a62Smarkadams4           for (int ii = 0; ii < bs; ii++) { // rows in block
780572833a62Smarkadams4             aa = aseq->a + ai[brow + ii] + k;
780672833a62Smarkadams4             for (int jj = 0; jj < bs; jj++) {         // columns in block
780772833a62Smarkadams4               val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
780872833a62Smarkadams4             }
780972833a62Smarkadams4           }
781059ee9f9fSPierre Jolivet           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
781172833a62Smarkadams4           AA[k / bs] = val;
781272833a62Smarkadams4         }
781372833a62Smarkadams4         grow = Istart / bs + brow / bs;
781472833a62Smarkadams4         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, INSERT_VALUES));
781572833a62Smarkadams4       }
781672833a62Smarkadams4       // off-diag
781772833a62Smarkadams4       if (ismpiaij) {
781872833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
781972833a62Smarkadams4         const PetscScalar *vals;
782072833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
782172833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
782272833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
782372833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
782472833a62Smarkadams4           for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
782559ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
782672833a62Smarkadams4             AA[k / bs] = 0;
782772833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
782872833a62Smarkadams4           }
782972833a62Smarkadams4           nc = ncols / bs;
783072833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
783172833a62Smarkadams4           for (int ii = 0; ii < bs; ii++) { // rows in block
783272833a62Smarkadams4             PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
783372833a62Smarkadams4             for (int k = 0; k < ncols; k += bs) {
783472833a62Smarkadams4               for (int jj = 0; jj < bs; jj++) { // cols in block
783559ee9f9fSPierre Jolivet                 PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
783672833a62Smarkadams4                 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
783772833a62Smarkadams4               }
783872833a62Smarkadams4             }
783972833a62Smarkadams4             PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
784072833a62Smarkadams4           }
784172833a62Smarkadams4           grow = Istart / bs + brow / bs;
784272833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, INSERT_VALUES));
784372833a62Smarkadams4         }
784472833a62Smarkadams4       }
784572833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
784672833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
78472cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
784872833a62Smarkadams4     } else {
784972833a62Smarkadams4       const PetscScalar *vals;
785072833a62Smarkadams4       const PetscInt    *idx;
785172833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
785272833a62Smarkadams4     old_bs:
785372833a62Smarkadams4       /*
785472833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
785572833a62Smarkadams4        */
785672833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
785772833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
785872833a62Smarkadams4       if (isseqaij) {
785972833a62Smarkadams4         PetscInt max_d_nnz;
786072833a62Smarkadams4         /*
786172833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
786272833a62Smarkadams4          */
786372833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
786472833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
786572833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
786648a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
786772833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
786872833a62Smarkadams4       } else if (ismpiaij) {
786972833a62Smarkadams4         Mat             Daij, Oaij;
787072833a62Smarkadams4         const PetscInt *garray;
787172833a62Smarkadams4         PetscInt        max_d_nnz;
787272833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
787372833a62Smarkadams4         /*
787472833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
787572833a62Smarkadams4          */
787672833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
787772833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
787872833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
787948a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
788072833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
788172833a62Smarkadams4         /*
788272833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
788372833a62Smarkadams4          */
788472833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
788572833a62Smarkadams4           o_nnz[jj] = 0;
788672833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
788772833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
788872833a62Smarkadams4             o_nnz[jj] += ncols;
788972833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
789072833a62Smarkadams4           }
789172833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
789272833a62Smarkadams4         }
789372833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
789472833a62Smarkadams4       /* get scalar copy (norms) of matrix */
789572833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
789672833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
789772833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
789872833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
789972833a62Smarkadams4         PetscInt dest_row = Ii / bs;
790072833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
790172833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
790272833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
790372833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
790472833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
790572833a62Smarkadams4         }
790672833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
790772833a62Smarkadams4       }
790872833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
790972833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
791072833a62Smarkadams4     }
791172833a62Smarkadams4   } else {
79122d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79132d776b49SBarry Smith     else {
79142d776b49SBarry Smith       Gmat = Amat;
79152d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79162d776b49SBarry Smith     }
79179371c9d4SSatish Balay     if (isseqaij) {
79189371c9d4SSatish Balay       a = Gmat;
79199371c9d4SSatish Balay       b = NULL;
79209371c9d4SSatish Balay     } else {
792172833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
79229371c9d4SSatish Balay       a             = d->A;
79239371c9d4SSatish Balay       b             = d->B;
792472833a62Smarkadams4     }
79252d776b49SBarry Smith     if (filter >= 0 || scale) {
79262d776b49SBarry Smith       /* take absolute value of each entry */
792772833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
792872833a62Smarkadams4         MatInfo      info;
792972833a62Smarkadams4         PetscScalar *avals;
793072833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
793172833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
793272833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
793372833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
793472833a62Smarkadams4       }
793572833a62Smarkadams4     }
79362d776b49SBarry Smith   }
793772833a62Smarkadams4   if (symmetrize) {
7938b94d7dedSBarry Smith     PetscBool isset, issym;
7939b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
7940b94d7dedSBarry Smith     if (!isset || !issym) {
794172833a62Smarkadams4       Mat matTrans;
794272833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
79431fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
794472833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
794572833a62Smarkadams4     }
794672833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
79472d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
794872833a62Smarkadams4   if (scale) {
794972833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
795072833a62Smarkadams4     Vec diag;
795172833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
795272833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
795372833a62Smarkadams4     PetscCall(VecReciprocal(diag));
795472833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
795572833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
795672833a62Smarkadams4     PetscCall(VecDestroy(&diag));
795772833a62Smarkadams4   }
795872833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
79592d776b49SBarry Smith 
79602d776b49SBarry Smith   if (filter >= 0) {
79612ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
79622ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
79632d776b49SBarry Smith   }
796472833a62Smarkadams4   *a_Gmat = Gmat;
79653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
796672833a62Smarkadams4 }
796772833a62Smarkadams4 
796872833a62Smarkadams4 /*
796998921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
797098921bdaSJacob Faibussowitsch */
797198921bdaSJacob Faibussowitsch #include <petsc/private/fortranimpl.h>
797298921bdaSJacob Faibussowitsch 
797398921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
79749566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
79759566063dSJacob Faibussowitsch #undef PetscCall
79769371c9d4SSatish Balay #define PetscCall(...) \
79779371c9d4SSatish Balay   do { \
79785f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
797998921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
798098921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
798198921bdaSJacob Faibussowitsch       return; \
798298921bdaSJacob Faibussowitsch     } \
798398921bdaSJacob Faibussowitsch   } while (0)
798498921bdaSJacob Faibussowitsch 
798598921bdaSJacob Faibussowitsch #undef SETERRQ
79869371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
79879371c9d4SSatish Balay   do { \
798898921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
798998921bdaSJacob Faibussowitsch     return; \
799098921bdaSJacob Faibussowitsch   } while (0)
799198921bdaSJacob Faibussowitsch 
799298921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
799398921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
799498921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
799598921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
799698921bdaSJacob Faibussowitsch #else
799798921bdaSJacob Faibussowitsch #endif
7998d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
7999d71ae5a4SJacob Faibussowitsch {
800098921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
800198921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
800298921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
800398921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
800498921bdaSJacob Faibussowitsch   PetscScalar value;
800598921bdaSJacob Faibussowitsch 
800698921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
800798921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80085f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
800998921bdaSJacob Faibussowitsch   {
801098921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
801198921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
801298921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
801398921bdaSJacob Faibussowitsch 
801498921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
801598921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
801698921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
801798921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
801898921bdaSJacob Faibussowitsch     MatScalar  *aa;
801998921bdaSJacob Faibussowitsch     PetscBool   ignorezeroentries = (((a->ignorezeroentries) && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
802098921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
802198921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
802298921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
802398921bdaSJacob Faibussowitsch     MatScalar  *ba;
802498921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
802598921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
802698921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
802798921bdaSJacob Faibussowitsch 
802898921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
802998921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
803098921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
803198921bdaSJacob Faibussowitsch 
803298921bdaSJacob Faibussowitsch     PetscFunctionBegin;
80339566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
80349566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
803598921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
803698921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
80376bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
803898921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
803998921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
804098921bdaSJacob Faibussowitsch         lastcol1 = -1;
804198921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
804298921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
804398921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
804498921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
804598921bdaSJacob Faibussowitsch         low1     = 0;
804698921bdaSJacob Faibussowitsch         high1    = nrow1;
804798921bdaSJacob Faibussowitsch         lastcol2 = -1;
804898921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
804998921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
805098921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
805198921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
805298921bdaSJacob Faibussowitsch         low2     = 0;
805398921bdaSJacob Faibussowitsch         high2    = nrow2;
805498921bdaSJacob Faibussowitsch 
805598921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
805698921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
805798921bdaSJacob Faibussowitsch           else value = v[i + j * m];
805898921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
805998921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
806098921bdaSJacob Faibussowitsch             col = in[j] - cstart;
806198921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
806298921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
806398921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
806463a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
806598921bdaSJacob Faibussowitsch           } else {
806698921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
806748a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
806898921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8069eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
807098921bdaSJacob Faibussowitsch               col--;
807198921bdaSJacob Faibussowitsch #else
807298921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
807398921bdaSJacob Faibussowitsch #endif
807498921bdaSJacob Faibussowitsch               if (col < 0 && !((Mat_SeqAIJ *)(aij->A->data))->nonew) {
80759566063dSJacob Faibussowitsch                 PetscCall(MatDisAssemble_MPIAIJ(mat));
807698921bdaSJacob Faibussowitsch                 col = in[j];
807798921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
807898921bdaSJacob Faibussowitsch                 B        = aij->B;
807998921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
80809371c9d4SSatish Balay                 bimax    = b->imax;
80819371c9d4SSatish Balay                 bi       = b->i;
80829371c9d4SSatish Balay                 bilen    = b->ilen;
80839371c9d4SSatish Balay                 bj       = b->j;
808498921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
808598921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
808698921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
808798921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
808898921bdaSJacob Faibussowitsch                 low2     = 0;
808998921bdaSJacob Faibussowitsch                 high2    = nrow2;
809098921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
809198921bdaSJacob Faibussowitsch                 ba       = b->a;
809298921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
809398921bdaSJacob Faibussowitsch               }
809498921bdaSJacob Faibussowitsch             } else col = in[j];
809598921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
809698921bdaSJacob Faibussowitsch           }
809798921bdaSJacob Faibussowitsch         }
809898921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
809998921bdaSJacob Faibussowitsch         if (roworiented) {
81009566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
810198921bdaSJacob Faibussowitsch         } else {
81029566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
810398921bdaSJacob Faibussowitsch         }
810498921bdaSJacob Faibussowitsch       }
810598921bdaSJacob Faibussowitsch     }
81069566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81079566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
810898921bdaSJacob Faibussowitsch   }
810998921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
811098921bdaSJacob Faibussowitsch }
811172833a62Smarkadams4 
811298921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
811398921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
811498921bdaSJacob Faibussowitsch  * original definitions */
81159566063dSJacob Faibussowitsch #undef PetscCall
811698921bdaSJacob Faibussowitsch #undef SETERRQ
8117