1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 1026cec326SBarry Smith { 1126cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1226cec326SBarry Smith 1326cec326SBarry Smith PetscFunctionBegin; 1426cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1526cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1626cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 1726cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 1826cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2026cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2126cec326SBarry Smith #else 2226cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 2326cec326SBarry Smith #endif 2426cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 2526cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 2626cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 2726cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 2826cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 2926cec326SBarry Smith 3026cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3126cec326SBarry Smith 3226cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 3326cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 3426cec326SBarry Smith 3526cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 4126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 4326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 4726cec326SBarry Smith #endif 4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 4926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 5026cec326SBarry Smith #endif 5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 5226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 5326cec326SBarry Smith #endif 5426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 5726cec326SBarry Smith #endif 5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 6026cec326SBarry Smith #endif 6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 6226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 6326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 6426cec326SBarry Smith #endif 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 6926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 7326cec326SBarry Smith #endif 7426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 7626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 7726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 7926cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 8026cec326SBarry Smith } 8126cec326SBarry Smith 8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 8326cec326SBarry Smith #define TYPE AIJ 8426cec326SBarry Smith #define TYPE_AIJ 8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 8626cec326SBarry Smith #undef TYPE 8726cec326SBarry Smith #undef TYPE_AIJ 8826cec326SBarry Smith 89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 90d71ae5a4SJacob Faibussowitsch { 918a9c020eSBarry Smith Mat B; 928a9c020eSBarry Smith 938a9c020eSBarry Smith PetscFunctionBegin; 948a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 958a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 968a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 97501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 998a9c020eSBarry Smith } 1008a9c020eSBarry Smith 101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 102d71ae5a4SJacob Faibussowitsch { 1038a9c020eSBarry Smith Mat B; 1048a9c020eSBarry Smith 1058a9c020eSBarry Smith PetscFunctionBegin; 1068a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1078a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 108501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1108a9c020eSBarry Smith } 1118a9c020eSBarry Smith 11201bebe75SBarry Smith /*MC 11301bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 11401bebe75SBarry Smith 11511a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 11611a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 11711a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 11801bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 11901bebe75SBarry Smith the above preallocation routines for simplicity. 12001bebe75SBarry Smith 12127430b45SBarry Smith Options Database Key: 12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 12301bebe75SBarry Smith 12411a5261eSBarry Smith Developer Note: 1252ef1f0ffSBarry Smith Level: beginner 1262ef1f0ffSBarry Smith 12711a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 12801bebe75SBarry Smith enough exist. 12901bebe75SBarry Smith 1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 13101bebe75SBarry Smith M*/ 13201bebe75SBarry Smith 13301bebe75SBarry Smith /*MC 13401bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 13501bebe75SBarry Smith 13611a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 13711a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 13811a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 13901bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14001bebe75SBarry Smith the above preallocation routines for simplicity. 14101bebe75SBarry Smith 14227430b45SBarry Smith Options Database Key: 14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 14401bebe75SBarry Smith 14501bebe75SBarry Smith Level: beginner 14601bebe75SBarry Smith 1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 14801bebe75SBarry Smith M*/ 14901bebe75SBarry Smith 150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 151d71ae5a4SJacob Faibussowitsch { 152f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 153f74ef234SStefano Zampini 154f74ef234SStefano Zampini PetscFunctionBegin; 155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 156b470e4b4SRichard Tran Mills A->boundtocpu = flg; 157f74ef234SStefano Zampini #endif 1581baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1591baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1603120d049SRichard Tran Mills 1613120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1623120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1633120d049SRichard Tran Mills * to differ from the parent matrix. */ 1641baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1651baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 167f74ef234SStefano Zampini } 168f74ef234SStefano Zampini 169ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 170d71ae5a4SJacob Faibussowitsch { 17126bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 17226bda2c4Sstefano_zampini 17326bda2c4Sstefano_zampini PetscFunctionBegin; 17446533700Sstefano_zampini if (mat->A) { 1759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 17746533700Sstefano_zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17926bda2c4Sstefano_zampini } 18026bda2c4Sstefano_zampini 181ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 182d71ae5a4SJacob Faibussowitsch { 18327d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 18427d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 18527d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 18627d4218bSShri Abhyankar const PetscInt *ia, *ib; 187ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 18827d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 18927d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 19027d4218bSShri Abhyankar 19127d4218bSShri Abhyankar PetscFunctionBegin; 192f4259b30SLisandro Dalcin *keptrows = NULL; 193ce496241SStefano Zampini 19427d4218bSShri Abhyankar ia = a->i; 19527d4218bSShri Abhyankar ib = b->i; 1969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 1979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 19827d4218bSShri Abhyankar for (i = 0; i < m; i++) { 19927d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 20027d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 20127d4218bSShri Abhyankar if (!na && !nb) { 20227d4218bSShri Abhyankar cnt++; 20327d4218bSShri Abhyankar goto ok1; 20427d4218bSShri Abhyankar } 205ce496241SStefano Zampini aa = aav + ia[i]; 20627d4218bSShri Abhyankar for (j = 0; j < na; j++) { 20727d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 20827d4218bSShri Abhyankar } 2098e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 21027d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 21127d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 21227d4218bSShri Abhyankar } 21327d4218bSShri Abhyankar cnt++; 21427d4218bSShri Abhyankar ok1:; 21527d4218bSShri Abhyankar } 216462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 217ce496241SStefano Zampini if (!n0rows) { 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 221ce496241SStefano Zampini } 2229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 22327d4218bSShri Abhyankar cnt = 0; 22427d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22527d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22627d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22727d4218bSShri Abhyankar if (!na && !nb) continue; 228ce496241SStefano Zampini aa = aav + ia[i]; 22927d4218bSShri Abhyankar for (j = 0; j < na; j++) { 23027d4218bSShri Abhyankar if (aa[j] != 0.0) { 23127d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23227d4218bSShri Abhyankar goto ok2; 23327d4218bSShri Abhyankar } 23427d4218bSShri Abhyankar } 2358e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23627d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23727d4218bSShri Abhyankar if (bb[j] != 0.0) { 23827d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23927d4218bSShri Abhyankar goto ok2; 24027d4218bSShri Abhyankar } 24127d4218bSShri Abhyankar } 24227d4218bSShri Abhyankar ok2:; 24327d4218bSShri Abhyankar } 2449566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24827d4218bSShri Abhyankar } 24927d4218bSShri Abhyankar 250ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 251d71ae5a4SJacob Faibussowitsch { 25299e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 25394342113SStefano Zampini PetscBool cong; 25499e65526SBarry Smith 25599e65526SBarry Smith PetscFunctionBegin; 2569566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 25794342113SStefano Zampini if (Y->assembled && cong) { 2589566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 25999e65526SBarry Smith } else { 2609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 26199e65526SBarry Smith } 2623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26399e65526SBarry Smith } 26499e65526SBarry Smith 265ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 266d71ae5a4SJacob Faibussowitsch { 267f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 268f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 269f1f41ecbSJed Brown 270f1f41ecbSJed Brown PetscFunctionBegin; 2710298fd71SBarry Smith *zrows = NULL; 2729566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2739566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 274f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2759566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277f1f41ecbSJed Brown } 278f1f41ecbSJed Brown 279ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 280d71ae5a4SJacob Faibussowitsch { 2810716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 282a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 2830716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 2840716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 2850716a85fSBarry Smith PetscReal *work; 286ce496241SStefano Zampini const PetscScalar *dummy; 2876497c311SBarry Smith PetscMPIInt in; 2880716a85fSBarry Smith 2890716a85fSBarry Smith PetscFunctionBegin; 2909566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 2919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 2929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 2939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 2949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 2959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 296857cbf51SRichard Tran Mills if (type == NORM_2) { 297ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 298ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 299857cbf51SRichard Tran Mills } else if (type == NORM_1) { 300ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 301ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 302857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 303ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 304ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 305857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 306ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 307ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 308857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 309ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 310ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 311857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 3126497c311SBarry Smith PetscCall(PetscMPIIntCast(n, &in)); 313857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 314462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(work, reductions, in, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3150716a85fSBarry Smith } else { 316462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(work, reductions, in, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3170716a85fSBarry Smith } 3189566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 319857cbf51SRichard Tran Mills if (type == NORM_2) { 320a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 321857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 322a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3230716a85fSBarry Smith } 3243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3250716a85fSBarry Smith } 3260716a85fSBarry Smith 327ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 328d71ae5a4SJacob Faibussowitsch { 329e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 330e52d2c62SBarry Smith IS sis, gis; 331e52d2c62SBarry Smith const PetscInt *isis, *igis; 332e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 333e52d2c62SBarry Smith 334e52d2c62SBarry Smith PetscFunctionBegin; 3359566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3369566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3379566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3389566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3399566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3409566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 341e52d2c62SBarry Smith 3429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3439566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3449566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 345e52d2c62SBarry Smith n = ngis + nsis; 3469566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3479566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 348e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3499566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 350e52d2c62SBarry Smith 3519566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3529566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 356e52d2c62SBarry Smith } 357e52d2c62SBarry Smith 358dd6ea824SBarry Smith /* 3590f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3609e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3610f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3620f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 36372fa4726SStefano Zampini has an order N integer array but is fast to access. 3649e25ed09SBarry Smith */ 365d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 366d71ae5a4SJacob Faibussowitsch { 36744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 368d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 369dbb450caSBarry Smith 3703a40ed3dSBarry Smith PetscFunctionBegin; 37108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 372aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 373eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 374c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 375b1fc9764SSatish Balay #else 3769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 377905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 378b1fc9764SSatish Balay #endif 3793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3809e25ed09SBarry Smith } 3819e25ed09SBarry Smith 382d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 383a8f51744SPierre Jolivet do { \ 384db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 385db4deed7SKarl Rupp else high1 = nrow1; \ 386fd3458f5SBarry Smith lastcol1 = col; \ 387fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 388fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 389fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 390fd3458f5SBarry Smith else low1 = t; \ 391ba4e3ef2SSatish Balay } \ 392fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 393fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 394fd3458f5SBarry Smith if (rp1[_i] == col) { \ 3950c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 3960c0d7e18SFande Kong ap1[_i] += value; \ 3970c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 3980c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 3999371c9d4SSatish Balay } else ap1[_i] = value; \ 40030770e4dSSatish Balay goto a_noinsert; \ 4010520107fSSatish Balay } \ 4020520107fSSatish Balay } \ 4039371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4049371c9d4SSatish Balay low1 = 0; \ 4059371c9d4SSatish Balay high1 = nrow1; \ 4069371c9d4SSatish Balay goto a_noinsert; \ 4079371c9d4SSatish Balay } \ 4089371c9d4SSatish Balay if (nonew == 1) { \ 4099371c9d4SSatish Balay low1 = 0; \ 4109371c9d4SSatish Balay high1 = nrow1; \ 4119371c9d4SSatish Balay goto a_noinsert; \ 4129371c9d4SSatish Balay } \ 41308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 414fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4159371c9d4SSatish Balay N = nrow1++ - 1; \ 4169371c9d4SSatish Balay a->nz++; \ 4179371c9d4SSatish Balay high1++; \ 4180520107fSSatish Balay /* shift up all the later entries in this row */ \ 4199566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4209566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 421fd3458f5SBarry Smith rp1[_i] = col; \ 422fd3458f5SBarry Smith ap1[_i] = value; \ 42330770e4dSSatish Balay a_noinsert:; \ 424fd3458f5SBarry Smith ailen[row] = nrow1; \ 425a8f51744SPierre Jolivet } while (0) 4260a198c4cSBarry Smith 427d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 428a8f51744SPierre Jolivet do { \ 429db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 430db4deed7SKarl Rupp else high2 = nrow2; \ 431fd3458f5SBarry Smith lastcol2 = col; \ 432fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 433fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 434fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 435fd3458f5SBarry Smith else low2 = t; \ 436ba4e3ef2SSatish Balay } \ 437fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 438fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 439fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4400c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4410c0d7e18SFande Kong ap2[_i] += value; \ 4420c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4439371c9d4SSatish Balay } else ap2[_i] = value; \ 44430770e4dSSatish Balay goto b_noinsert; \ 44530770e4dSSatish Balay } \ 44630770e4dSSatish Balay } \ 4479371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4489371c9d4SSatish Balay low2 = 0; \ 4499371c9d4SSatish Balay high2 = nrow2; \ 4509371c9d4SSatish Balay goto b_noinsert; \ 4519371c9d4SSatish Balay } \ 4529371c9d4SSatish Balay if (nonew == 1) { \ 4539371c9d4SSatish Balay low2 = 0; \ 4549371c9d4SSatish Balay high2 = nrow2; \ 4559371c9d4SSatish Balay goto b_noinsert; \ 4569371c9d4SSatish Balay } \ 45708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 458fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4599371c9d4SSatish Balay N = nrow2++ - 1; \ 4609371c9d4SSatish Balay b->nz++; \ 4619371c9d4SSatish Balay high2++; \ 46230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4639566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 465fd3458f5SBarry Smith rp2[_i] = col; \ 466fd3458f5SBarry Smith ap2[_i] = value; \ 46730770e4dSSatish Balay b_noinsert:; \ 468fd3458f5SBarry Smith bilen[row] = nrow2; \ 469a8f51744SPierre Jolivet } while (0) 47030770e4dSSatish Balay 471ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 472d71ae5a4SJacob Faibussowitsch { 4732fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4742fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4752fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 476fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4772fd7e33dSBarry Smith 4782fd7e33dSBarry Smith PetscFunctionBegin; 4792fd7e33dSBarry Smith /* code only works for square matrices A */ 4802fd7e33dSBarry Smith 4812fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 4829566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 4832fd7e33dSBarry Smith row = row - diag; 4842fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 4852fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 4862fd7e33dSBarry Smith } 487fff043a9SJunchao Zhang if (l) { 4889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 4899566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 4909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 491fff043a9SJunchao Zhang } 4922fd7e33dSBarry Smith 4932fd7e33dSBarry Smith /* diagonal part */ 494fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 4959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 49657508eceSPierre Jolivet PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row])); 4979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 498fff043a9SJunchao Zhang } 4992fd7e33dSBarry Smith 5002fd7e33dSBarry Smith /* right of diagonal part */ 501fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5039566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 505fff043a9SJunchao Zhang } 5063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5072fd7e33dSBarry Smith } 5082fd7e33dSBarry Smith 509d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 510d71ae5a4SJacob Faibussowitsch { 51144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 512071fcb05SBarry Smith PetscScalar value = 0.0; 513d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 514d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 515ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5168a729477SBarry Smith 5170520107fSSatish Balay /* Some Variables required in the macro */ 5184ee7247eSSatish Balay Mat A = aij->A; 5194ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 52057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 521ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 52230770e4dSSatish Balay Mat B = aij->B; 52330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 524d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 525ce496241SStefano Zampini MatScalar *aa, *ba; 526fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5278d76821aSHong Zhang PetscInt nonew; 528a77337e4SBarry Smith MatScalar *ap1, *ap2; 5294ee7247eSSatish Balay 5303a40ed3dSBarry Smith PetscFunctionBegin; 5319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5338a729477SBarry Smith for (i = 0; i < m; i++) { 5345ef9f2a5SBarry Smith if (im[i] < 0) continue; 53508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5364b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5374b0e389bSBarry Smith row = im[i] - rstart; 538fd3458f5SBarry Smith lastcol1 = -1; 5398e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5408e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 541fd3458f5SBarry Smith rmax1 = aimax[row]; 542fd3458f5SBarry Smith nrow1 = ailen[row]; 543fd3458f5SBarry Smith low1 = 0; 544fd3458f5SBarry Smith high1 = nrow1; 545fd3458f5SBarry Smith lastcol2 = -1; 5468e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5478e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 548fd3458f5SBarry Smith rmax2 = bimax[row]; 549d498b1e9SBarry Smith nrow2 = bilen[row]; 550fd3458f5SBarry Smith low2 = 0; 551fd3458f5SBarry Smith high2 = nrow2; 552fd3458f5SBarry Smith 5531eb62cbbSBarry Smith for (j = 0; j < n; j++) { 554071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 555c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 556fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 557fd3458f5SBarry Smith col = in[j] - cstart; 5588d76821aSHong Zhang nonew = a->nonew; 559d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 560f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 561f7d195e4SLawrence Mitchell continue; 562f7d195e4SLawrence Mitchell } else { 563f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 564227d817aSBarry Smith if (mat->was_assembled) { 56548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 566aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 567eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 568fa46199cSSatish Balay col--; 569b1fc9764SSatish Balay #else 570905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 571b1fc9764SSatish Balay #endif 572f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 573eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); /* Change aij->B from reduced/local format to expanded/global format */ 5744b0e389bSBarry Smith col = in[j]; 5759bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 576f9508a3cSSatish Balay B = aij->B; 577f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5789371c9d4SSatish Balay bimax = b->imax; 5799371c9d4SSatish Balay bi = b->i; 5809371c9d4SSatish Balay bilen = b->ilen; 5819371c9d4SSatish Balay bj = b->j; 5829371c9d4SSatish Balay ba = b->a; 583cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 584cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 585d498b1e9SBarry Smith rmax2 = bimax[row]; 586d498b1e9SBarry Smith nrow2 = bilen[row]; 587d498b1e9SBarry Smith low2 = 0; 588d498b1e9SBarry Smith high2 = nrow2; 589d0f46423SBarry Smith bm = aij->B->rmap->n; 590f9508a3cSSatish Balay ba = b->a; 591d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 592f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 5939566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 59498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 5950587a0fcSBarry Smith } 596c48de900SBarry Smith } else col = in[j]; 5978d76821aSHong Zhang nonew = b->nonew; 598d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 5991eb62cbbSBarry Smith } 6001eb62cbbSBarry Smith } 6015ef9f2a5SBarry Smith } else { 60228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 60390f02eecSBarry Smith if (!aij->donotstash) { 6045080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 605d36fbae8SSatish Balay if (roworiented) { 6068e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 607d36fbae8SSatish Balay } else { 6088e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6094b0e389bSBarry Smith } 6101eb62cbbSBarry Smith } 6118a729477SBarry Smith } 61290f02eecSBarry Smith } 6135519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6168a729477SBarry Smith } 6178a729477SBarry Smith 6182b08fdbeSandi selinger /* 619904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6202b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 621904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6222b08fdbeSandi selinger */ 623d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 624d71ae5a4SJacob Faibussowitsch { 625904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 626904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6274cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 628904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 629904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 630904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 631904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 632904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6336dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 634904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 635904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 636904d1e70Sandi selinger 637904d1e70Sandi selinger PetscFunctionBegin; 638904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 639904d1e70Sandi selinger for (j = 0; j < am; j++) { 640904d1e70Sandi selinger dnz = onz = 0; 641904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6426dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 643904d1e70Sandi selinger /* If column is in the diagonal */ 644904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 645904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 646904d1e70Sandi selinger dnz++; 647904d1e70Sandi selinger } else { /* off-diagonal entries */ 648904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 649904d1e70Sandi selinger onz++; 650904d1e70Sandi selinger } 651904d1e70Sandi selinger } 652904d1e70Sandi selinger ailen[j] = dnz; 653904d1e70Sandi selinger bilen[j] = onz; 654904d1e70Sandi selinger } 6553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 656904d1e70Sandi selinger } 657904d1e70Sandi selinger 658904d1e70Sandi selinger /* 659904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 660904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6611de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6621de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6631de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 664904d1e70Sandi selinger */ 665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 666d71ae5a4SJacob Faibussowitsch { 6673a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6683a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6694cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 670f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6713a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6723a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6733a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6743a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6753a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6766dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6771de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 678904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 679904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6803a063d27Sandi selinger 6813a063d27Sandi selinger PetscFunctionBegin; 6823a063d27Sandi selinger /* Iterate over all rows of the matrix */ 6833a063d27Sandi selinger for (j = 0; j < am; j++) { 684904d1e70Sandi selinger dnz_row = onz_row = 0; 685904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 686904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 687e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 688e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 689ae8e66a0Sandi selinger /* If column is in the diagonal */ 6903a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 691904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 692904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 693904d1e70Sandi selinger dnz_row++; 694ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 695904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 696904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 697904d1e70Sandi selinger onz_row++; 6983a063d27Sandi selinger } 6993a063d27Sandi selinger } 700904d1e70Sandi selinger ailen[j] = dnz_row; 701904d1e70Sandi selinger bilen[j] = onz_row; 7023a063d27Sandi selinger } 7033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7043a063d27Sandi selinger } 7053a063d27Sandi selinger 706ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 707d71ae5a4SJacob Faibussowitsch { 708b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 709d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 710d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 711b49de8d1SLois Curfman McInnes 7123a40ed3dSBarry Smith PetscFunctionBegin; 713b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 71454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 71554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 71685835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 717b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 718b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 71954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 72054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 721b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 722b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7239566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 724fa852ad4SSatish Balay } else { 72548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 726aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 727eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 728fa46199cSSatish Balay col--; 729b1fc9764SSatish Balay #else 730905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 731b1fc9764SSatish Balay #endif 732e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 73348a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 734b49de8d1SLois Curfman McInnes } 735b49de8d1SLois Curfman McInnes } 736b49de8d1SLois Curfman McInnes } 7373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 738b49de8d1SLois Curfman McInnes } 739bc5ccf88SSatish Balay 740ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 741d71ae5a4SJacob Faibussowitsch { 742bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 743b1d57f15SBarry Smith PetscInt nstash, reallocs; 744bc5ccf88SSatish Balay 745bc5ccf88SSatish Balay PetscFunctionBegin; 7463ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 747bc5ccf88SSatish Balay 7489566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7499566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7509566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 752bc5ccf88SSatish Balay } 753bc5ccf88SSatish Balay 754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 755d71ae5a4SJacob Faibussowitsch { 756bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 757b1d57f15SBarry Smith PetscMPIInt n; 758b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 759e44c0bd4SBarry Smith PetscInt *row, *col; 760ace3abfcSBarry Smith PetscBool other_disassembled; 76187828ca2SBarry Smith PetscScalar *val; 762bc5ccf88SSatish Balay 76391c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7646e111a19SKarl Rupp 765bc5ccf88SSatish Balay PetscFunctionBegin; 7664cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 767a2d1c673SSatish Balay while (1) { 7689566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 769a2d1c673SSatish Balay if (!flg) break; 770a2d1c673SSatish Balay 771bc5ccf88SSatish Balay for (i = 0; i < n;) { 772bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7732205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7742205254eSKarl Rupp if (row[j] != rstart) break; 7752205254eSKarl Rupp } 776bc5ccf88SSatish Balay if (j < n) ncols = j - i; 777bc5ccf88SSatish Balay else ncols = n - i; 778bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7799566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 780bc5ccf88SSatish Balay i = j; 781bc5ccf88SSatish Balay } 782bc5ccf88SSatish Balay } 7839566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 784bc5ccf88SSatish Balay } 7858c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 786c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 7879ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 7889ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 7899566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 7909566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 7919ecce9b1SRichard Tran Mills } 792e2cf4d64SStefano Zampini #endif 7939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 7949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 795bc5ccf88SSatish Balay 796bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 797071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 798bc5ccf88SSatish Balay /* 799bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 800bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 801bc5ccf88SSatish Balay */ 802bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 803462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 80435cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 805eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 806ad59fb31SSatish Balay } 807ad59fb31SSatish Balay } 80848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8099566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8108c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 811c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 812e2cf4d64SStefano Zampini #endif 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 815bc5ccf88SSatish Balay 8169566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8172205254eSKarl Rupp 818f4259b30SLisandro Dalcin aij->rowvalues = NULL; 819a30b2313SHong Zhang 8209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 821e56f5c9eSBarry Smith 8224f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 823f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 824e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 825462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 826e56f5c9eSBarry Smith } 8278c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 828c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 829e2cf4d64SStefano Zampini #endif 8303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 831bc5ccf88SSatish Balay } 832bc5ccf88SSatish Balay 833ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 834d71ae5a4SJacob Faibussowitsch { 83544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8363a40ed3dSBarry Smith 8373a40ed3dSBarry Smith PetscFunctionBegin; 8389566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8399566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8411eb62cbbSBarry Smith } 8421eb62cbbSBarry Smith 843ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 844d71ae5a4SJacob Faibussowitsch { 8451b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8461b1dd7adSMatthew G. Knepley PetscInt *lrows; 8476e520ac8SStefano Zampini PetscInt r, len; 8489939a2d1SBarry Smith PetscBool cong; 8491eb62cbbSBarry Smith 8503a40ed3dSBarry Smith PetscFunctionBegin; 8516e520ac8SStefano Zampini /* get locally owned rows */ 8529566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8539566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 854dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 85597b48c8fSBarry Smith if (x && b) { 8561b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8571b1dd7adSMatthew G. Knepley PetscScalar *bb; 8581b1dd7adSMatthew G. Knepley 85928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8609566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8619566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8621b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8639566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8649566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 86597b48c8fSBarry Smith } 866a92ad425SStefano Zampini 867a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8689566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8699566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 870a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 871a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 872a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 873a92ad425SStefano Zampini PetscInt nnwA, nnwB; 874a92ad425SStefano Zampini PetscBool nnzA, nnzB; 875a92ad425SStefano Zampini 876a92ad425SStefano Zampini nnwA = aijA->nonew; 877a92ad425SStefano Zampini nnwB = aijB->nonew; 878a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 879a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 880a92ad425SStefano Zampini if (!nnzA) { 8819566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 882a92ad425SStefano Zampini aijA->nonew = 0; 883a92ad425SStefano Zampini } 884a92ad425SStefano Zampini if (!nnzB) { 8859566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 886a92ad425SStefano Zampini aijB->nonew = 0; 887a92ad425SStefano Zampini } 888a92ad425SStefano Zampini /* Must zero here before the next loop */ 8899566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8909566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8911b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 8921b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 893a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 8949566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 895e2d53e46SBarry Smith } 896a92ad425SStefano Zampini aijA->nonew = nnwA; 897a92ad425SStefano Zampini aijB->nonew = nnwB; 8986eb55b6aSBarry Smith } else { 8999566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9009566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9016eb55b6aSBarry Smith } 9029566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9039566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9049566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9054f9cfa9eSBarry Smith 9069939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 907f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9089939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 909462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9109939a2d1SBarry Smith } 9113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9121eb62cbbSBarry Smith } 9131eb62cbbSBarry Smith 914ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 915d71ae5a4SJacob Faibussowitsch { 9169c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9176497c311SBarry Smith PetscInt n = A->rmap->n; 918131c27b5Sprj- PetscInt i, j, r, m, len = 0; 91954bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 920131c27b5Sprj- PetscMPIInt p = 0; 92154bd4135SMatthew G. Knepley PetscSFNode *rrows; 92254bd4135SMatthew G. Knepley PetscSF sf; 9239c7c4993SBarry Smith const PetscScalar *xx; 924fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 925564f14d6SBarry Smith Vec xmask, lmask; 926564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 927564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 928564f14d6SBarry Smith PetscScalar *aa; 9299c7c4993SBarry Smith 9309c7c4993SBarry Smith PetscFunctionBegin; 93154bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 93354bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 93554bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 93654bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 937aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9385ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9399566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9405ba17502SJed Brown } 94154bd4135SMatthew G. Knepley rrows[r].rank = p; 94254bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9439c7c4993SBarry Smith } 9449566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9459566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 94654bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9479566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9489566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9499566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 95054bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9519371c9d4SSatish Balay for (r = 0; r < n; ++r) 9529371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 953564f14d6SBarry Smith /* zero diagonal part of matrix */ 9549566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9554cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9569566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9579566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9589566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 95954bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9629566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9639566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 964a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 965a92ad425SStefano Zampini PetscBool cong; 966a92ad425SStefano Zampini 9679566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 96828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9719566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9729566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 973377aa5a1SBarry Smith } 9749566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9754cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 977564f14d6SBarry Smith ii = aij->i; 9788e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 979564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 980564f14d6SBarry Smith if (aij->compressedrow.use) { 981564f14d6SBarry Smith m = aij->compressedrow.nrows; 982564f14d6SBarry Smith ii = aij->compressedrow.i; 983564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 984564f14d6SBarry Smith for (i = 0; i < m; i++) { 985564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 986564f14d6SBarry Smith aj = aij->j + ii[i]; 987fff043a9SJunchao Zhang aa = aij_a + ii[i]; 988564f14d6SBarry Smith 989564f14d6SBarry Smith for (j = 0; j < n; j++) { 99025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 991377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 992564f14d6SBarry Smith *aa = 0.0; 993564f14d6SBarry Smith } 994564f14d6SBarry Smith aa++; 995564f14d6SBarry Smith aj++; 996564f14d6SBarry Smith } 997564f14d6SBarry Smith ridx++; 998564f14d6SBarry Smith } 999564f14d6SBarry Smith } else { /* do not use compressed row format */ 1000564f14d6SBarry Smith m = l->B->rmap->n; 1001564f14d6SBarry Smith for (i = 0; i < m; i++) { 1002564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1003564f14d6SBarry Smith aj = aij->j + ii[i]; 1004fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1005564f14d6SBarry Smith for (j = 0; j < n; j++) { 100625266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1007377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1008564f14d6SBarry Smith *aa = 0.0; 1009564f14d6SBarry Smith } 1010564f14d6SBarry Smith aa++; 1011564f14d6SBarry Smith aj++; 1012564f14d6SBarry Smith } 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith } 1015a92ad425SStefano Zampini if (x && b) { 10169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10179566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1018377aa5a1SBarry Smith } 10199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10209566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10229566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10234f9cfa9eSBarry Smith 10244f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1025f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10264f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1027462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10284f9cfa9eSBarry Smith } 10293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10309c7c4993SBarry Smith } 10319c7c4993SBarry Smith 1032ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1033d71ae5a4SJacob Faibussowitsch { 1034416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1035b1d57f15SBarry Smith PetscInt nt; 103619b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1037416022c9SBarry Smith 10383a40ed3dSBarry Smith PetscFunctionBegin; 10399566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 104008401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10419566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1042296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10439566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1044296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10461eb62cbbSBarry Smith } 10471eb62cbbSBarry Smith 1048ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1049d71ae5a4SJacob Faibussowitsch { 1050bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1051bd0c2dcbSBarry Smith 1052bd0c2dcbSBarry Smith PetscFunctionBegin; 10539566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1055bd0c2dcbSBarry Smith } 1056bd0c2dcbSBarry Smith 1057ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1058d71ae5a4SJacob Faibussowitsch { 1059416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 106001ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10613a40ed3dSBarry Smith 10623a40ed3dSBarry Smith PetscFunctionBegin; 10639566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10649566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10659566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10669566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1068da3a660dSBarry Smith } 1069da3a660dSBarry Smith 1070ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1071d71ae5a4SJacob Faibussowitsch { 1072416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1073da3a660dSBarry Smith 10743a40ed3dSBarry Smith PetscFunctionBegin; 1075da3a660dSBarry Smith /* do nondiagonal part */ 10769566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1077da3a660dSBarry Smith /* do local part */ 10789566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10799613dc34SJunchao Zhang /* add partial results together */ 10809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10819566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1083da3a660dSBarry Smith } 1084da3a660dSBarry Smith 1085ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1086d71ae5a4SJacob Faibussowitsch { 10874f423910Svictorle MPI_Comm comm; 1088ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1089ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1090cd0d46ebSvictorle IS Me, Notme; 1091b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 109254d735aeSStefano Zampini PetscBool lf; 1093b1d57f15SBarry Smith PetscMPIInt size; 1094cd0d46ebSvictorle 1095cd0d46ebSvictorle PetscFunctionBegin; 109642e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 10979566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 1098462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 10993ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11023ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 110342e5f5b4Svictorle 11047dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11059566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11069566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1108cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1109cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11109566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11119566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11129566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 111366501d38Svictorle Aoff = Aoffs[0]; 11149566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 111566501d38Svictorle Boff = Boffs[0]; 11169566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11179566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11189566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11209566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11219566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1123cd0d46ebSvictorle } 1124cd0d46ebSvictorle 1125ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1126d71ae5a4SJacob Faibussowitsch { 1127416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1128da3a660dSBarry Smith 11293a40ed3dSBarry Smith PetscFunctionBegin; 1130da3a660dSBarry Smith /* do nondiagonal part */ 11319566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1132da3a660dSBarry Smith /* do local part */ 11339566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11349613dc34SJunchao Zhang /* add partial results together */ 11359566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11369566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1138da3a660dSBarry Smith } 1139da3a660dSBarry Smith 11401eb62cbbSBarry Smith /* 11411eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11421eb62cbbSBarry Smith diagonal block 11431eb62cbbSBarry Smith */ 1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1145d71ae5a4SJacob Faibussowitsch { 1146416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11473a40ed3dSBarry Smith 11483a40ed3dSBarry Smith PetscFunctionBegin; 114908401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1150aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11519566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11531eb62cbbSBarry Smith } 11541eb62cbbSBarry Smith 1155ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1156d71ae5a4SJacob Faibussowitsch { 1157052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11583a40ed3dSBarry Smith 11593a40ed3dSBarry Smith PetscFunctionBegin; 11609566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11619566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1163052efed2SBarry Smith } 1164052efed2SBarry Smith 1165ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1166d71ae5a4SJacob Faibussowitsch { 11678e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11688e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11698e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11703ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11712e5835c6SStefano Zampini const PetscScalar *aa, *ba; 117217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 117317a3732bSBarry Smith PetscInt64 nz, hnz; 11743ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11753ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11763ea6fe3dSLisandro Dalcin PetscScalar *matvals; 117717a3732bSBarry Smith PetscMPIInt rank; 11788e2fed03SBarry Smith 11798e2fed03SBarry Smith PetscFunctionBegin; 11809566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11813ea6fe3dSLisandro Dalcin 11823ea6fe3dSLisandro Dalcin M = mat->rmap->N; 11833ea6fe3dSLisandro Dalcin N = mat->cmap->N; 11843ea6fe3dSLisandro Dalcin m = mat->rmap->n; 11853ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 11863ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 11878e2fed03SBarry Smith nz = A->nz + B->nz; 11883ea6fe3dSLisandro Dalcin 11893ea6fe3dSLisandro Dalcin /* write matrix header */ 11900700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 11919371c9d4SSatish Balay header[1] = M; 11929371c9d4SSatish Balay header[2] = N; 119317a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 119417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 119538b83642SBarry Smith if (rank == 0) { 11961690c2aeSBarry Smith if (hnz > PETSC_INT_MAX) header[3] = PETSC_INT_MAX; 119738b83642SBarry Smith else header[3] = (PetscInt)hnz; 119838b83642SBarry Smith } 11999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12008e2fed03SBarry Smith 12013ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12033ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12049566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12059566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12068e2fed03SBarry Smith 12073ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12093ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12103ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12113ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12123ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12138e2fed03SBarry Smith } 12149371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12159371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12168e2fed03SBarry Smith } 121717a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12189566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12199566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12208e2fed03SBarry Smith 12213ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12253ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12263ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12273ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12282e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12298e2fed03SBarry Smith } 12309371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12319371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12328e2fed03SBarry Smith } 12339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 123517a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12369566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12379566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12388e2fed03SBarry Smith 12393ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12409566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12428e2fed03SBarry Smith } 12438e2fed03SBarry Smith 12449804daf3SBarry Smith #include <petscdraw.h> 1245ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1246d71ae5a4SJacob Faibussowitsch { 124744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 124832dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1249ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1250b0a32e0cSBarry Smith PetscViewer sviewer; 1251f3ef73ceSBarry Smith PetscViewerFormat format; 1252416022c9SBarry Smith 12533a40ed3dSBarry Smith PetscFunctionBegin; 12549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12559566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 125732077d6dSBarry Smith if (iascii) { 12589566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1259ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 12601690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1263ef5fdb51SBarry Smith for (i = 0; i < (PetscInt)size; i++) { 1264ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1265ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1266ef5fdb51SBarry Smith navg += nz[i]; 1267ef5fdb51SBarry Smith } 12689566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1269ef5fdb51SBarry Smith navg = navg / size; 12709566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1272ef5fdb51SBarry Smith } 12739566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1274456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12754e220ebcSLois Curfman McInnes MatInfo info; 12766335e310SSatish Balay PetscInt *inodes = NULL; 1277923f20ffSKris Buschelman 12789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12799566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12809566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12819566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1282923f20ffSKris Buschelman if (!inodes) { 12839371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12849371c9d4SSatish Balay (double)info.memory)); 12856831982aSBarry Smith } else { 12869371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12879371c9d4SSatish Balay (double)info.memory)); 12886831982aSBarry Smith } 12899566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12919566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 12929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12939566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 12949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 12959566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 12969566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 12973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1298fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1299923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13009566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1301923f20ffSKris Buschelman if (inodes) { 13029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1303d38fa0fbSBarry Smith } else { 13049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1305d38fa0fbSBarry Smith } 13063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13074aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 130908480c60SBarry Smith } 13108e2fed03SBarry Smith } else if (isbinary) { 13118e2fed03SBarry Smith if (size == 1) { 13129566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13139566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13148e2fed03SBarry Smith } else { 13159566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13168e2fed03SBarry Smith } 13173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131871e56450SStefano Zampini } else if (iascii && size == 1) { 13199566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13209566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13220f5bd95cSBarry Smith } else if (isdraw) { 1323b0a32e0cSBarry Smith PetscDraw draw; 1324ace3abfcSBarry Smith PetscBool isnull; 13259566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13269566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13273ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 132819bcc07fSBarry Smith } 132919bcc07fSBarry Smith 133071e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 133171e56450SStefano Zampini Mat A = NULL, Av; 133271e56450SStefano Zampini IS isrow, iscol; 13332ee70a88SLois Curfman McInnes 13349566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13359566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13369566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13379566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 133871e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 133971e56450SStefano Zampini /* 134071e56450SStefano Zampini Mat *AA, A = NULL, Av; 134171e56450SStefano Zampini IS isrow,iscol; 134271e56450SStefano Zampini 13439566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13449566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13459566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1346dd400576SPatrick Sanan if (rank == 0) { 13479566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 134871e56450SStefano Zampini A = AA[0]; 134971e56450SStefano Zampini Av = AA[0]; 135095373324SBarry Smith } 13519566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 135271e56450SStefano Zampini */ 13539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 135555843e3eSBarry Smith /* 135655843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1357b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 135855843e3eSBarry Smith */ 13599566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1360dd400576SPatrick Sanan if (rank == 0) { 136148a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13629566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 136395373324SBarry Smith } 13649566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13659566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 136695373324SBarry Smith } 13673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13681eb62cbbSBarry Smith } 13691eb62cbbSBarry Smith 1370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1371d71ae5a4SJacob Faibussowitsch { 1372ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1373416022c9SBarry Smith 13743a40ed3dSBarry Smith PetscFunctionBegin; 13759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13789566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 137948a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1381416022c9SBarry Smith } 1382416022c9SBarry Smith 1383ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1384d71ae5a4SJacob Faibussowitsch { 138544a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1386f4259b30SLisandro Dalcin Vec bb1 = NULL; 1387ace3abfcSBarry Smith PetscBool hasop; 13888a729477SBarry Smith 13893a40ed3dSBarry Smith PetscFunctionBegin; 1390a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 13919566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 13923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1393a2b30743SBarry Smith } 1394a2b30743SBarry Smith 139548a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 13964e980039SJed Brown 1397c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1398da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 13999566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14002798e883SHong Zhang its--; 1401da3a660dSBarry Smith } 14022798e883SHong Zhang 14032798e883SHong Zhang while (its--) { 14049566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14059566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14062798e883SHong Zhang 1407c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14089566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14099566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14102798e883SHong Zhang 1411c14dc6b6SHong Zhang /* local sweep */ 14129566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14132798e883SHong Zhang } 14143a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1415da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14172798e883SHong Zhang its--; 1418da3a660dSBarry Smith } 14192798e883SHong Zhang while (its--) { 14209566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14219566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14222798e883SHong Zhang 1423c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14249566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14259566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1426c14dc6b6SHong Zhang 1427c14dc6b6SHong Zhang /* local sweep */ 14289566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14292798e883SHong Zhang } 14303a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1431da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14329566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14332798e883SHong Zhang its--; 1434da3a660dSBarry Smith } 14352798e883SHong Zhang while (its--) { 14369566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14379566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14382798e883SHong Zhang 1439c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14409566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14419566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14422798e883SHong Zhang 1443c14dc6b6SHong Zhang /* local sweep */ 14449566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14452798e883SHong Zhang } 1446a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1447a7420bb7SBarry Smith Vec xx1; 1448a7420bb7SBarry Smith 14499566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14509566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1451a7420bb7SBarry Smith 14529566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14539566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1454a7420bb7SBarry Smith if (!mat->diag) { 14559566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14569566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1457a7420bb7SBarry Smith } 14589566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1459bd0c2dcbSBarry Smith if (hasop) { 14609566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1461bd0c2dcbSBarry Smith } else { 14629566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1463bd0c2dcbSBarry Smith } 14649566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1465887ee2caSBarry Smith 14669566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1467a7420bb7SBarry Smith 1468a7420bb7SBarry Smith /* local sweep */ 14699566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14709566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14719566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1472ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1473c14dc6b6SHong Zhang 14749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1475a0808db4SHong Zhang 14767b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14788a729477SBarry Smith } 1479a66be287SLois Curfman McInnes 1480ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1481d71ae5a4SJacob Faibussowitsch { 148272e6a0cfSJed Brown Mat aA, aB, Aperm; 148372e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 148472e6a0cfSJed Brown PetscScalar *aa, *ba; 148572e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 148672e6a0cfSJed Brown PetscSF rowsf, sf; 14870298fd71SBarry Smith IS parcolp = NULL; 148872e6a0cfSJed Brown PetscBool done; 148942e855d1Svictor 149042e855d1Svictor PetscFunctionBegin; 14919566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 14929566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 14939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 14949566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 149572e6a0cfSJed Brown 149672e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 14979566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 14989566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 14999566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 150072e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15019566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15029566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 150372e6a0cfSJed Brown 150472e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15059566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15069566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15079566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 150872e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15099566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15109566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15119566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 151272e6a0cfSJed Brown 15139566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15149566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15159566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 151672e6a0cfSJed Brown 151772e6a0cfSJed Brown /* Find out where my gcols should go */ 15189566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15209566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15219566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15249566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15259566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152672e6a0cfSJed Brown 15279566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15289566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15299566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 153072e6a0cfSJed Brown for (i = 0; i < m; i++) { 1531131c27b5Sprj- PetscInt row = rdest[i]; 1532131c27b5Sprj- PetscMPIInt rowner; 15339566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 153472e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1535131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1536131c27b5Sprj- PetscMPIInt cowner; 15379566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 153872e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 153972e6a0cfSJed Brown else onnz[i]++; 154072e6a0cfSJed Brown } 154172e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1542131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1543131c27b5Sprj- PetscMPIInt cowner; 15449566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 154572e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 154672e6a0cfSJed Brown else onnz[i]++; 154772e6a0cfSJed Brown } 154872e6a0cfSJed Brown } 15499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15519566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 155472e6a0cfSJed Brown 15559566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 155872e6a0cfSJed Brown for (i = 0; i < m; i++) { 155972e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1560970468b0SJed Brown PetscInt j0, rowlen; 156172e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1562970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1563970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15649566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1565970468b0SJed Brown } 156672e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1567970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1568970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15699566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1570970468b0SJed Brown } 157172e6a0cfSJed Brown } 15729566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15739566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15749566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15759566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15789566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15799566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15809566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15819566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 158272e6a0cfSJed Brown *B = Aperm; 15833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 158442e855d1Svictor } 158542e855d1Svictor 1586ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1587d71ae5a4SJacob Faibussowitsch { 1588c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1589c5e4d11fSDmitry Karpeev 1590c5e4d11fSDmitry Karpeev PetscFunctionBegin; 15919566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1592c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 15933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1594c5e4d11fSDmitry Karpeev } 1595c5e4d11fSDmitry Karpeev 1596ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1597d71ae5a4SJacob Faibussowitsch { 1598a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1599a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16003966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1601a66be287SLois Curfman McInnes 16023a40ed3dSBarry Smith PetscFunctionBegin; 16034e220ebcSLois Curfman McInnes info->block_size = 1.0; 16049566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16052205254eSKarl Rupp 16069371c9d4SSatish Balay isend[0] = info->nz_used; 16079371c9d4SSatish Balay isend[1] = info->nz_allocated; 16089371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16099371c9d4SSatish Balay isend[3] = info->memory; 16109371c9d4SSatish Balay isend[4] = info->mallocs; 16112205254eSKarl Rupp 16129566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16132205254eSKarl Rupp 16149371c9d4SSatish Balay isend[0] += info->nz_used; 16159371c9d4SSatish Balay isend[1] += info->nz_allocated; 16169371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16179371c9d4SSatish Balay isend[3] += info->memory; 16189371c9d4SSatish Balay isend[4] += info->mallocs; 1619a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16204e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16214e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16224e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16234e220ebcSLois Curfman McInnes info->memory = isend[3]; 16244e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1625a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1626462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16272205254eSKarl Rupp 16284e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16294e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16304e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16314e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16324e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1633a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1634462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16352205254eSKarl Rupp 16364e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16374e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16384e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16394e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16404e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1641a66be287SLois Curfman McInnes } 16424e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16434e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16444e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1646a66be287SLois Curfman McInnes } 1647a66be287SLois Curfman McInnes 1648d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1649d71ae5a4SJacob Faibussowitsch { 1650c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1651c74985f6SBarry Smith 16523a40ed3dSBarry Smith PetscFunctionBegin; 165312c028f9SKris Buschelman switch (op) { 1654512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 165512c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 165628b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1657a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 165812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16590ad02fcaSStefano Zampini case MAT_USE_INODES: 166012c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16611a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1662fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16639566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16649566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 166512c028f9SKris Buschelman break; 166612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 166743674050SBarry Smith MatCheckPreallocated(A, 1); 16684e0d8c25SBarry Smith a->roworiented = flg; 16692205254eSKarl Rupp 16709566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16719566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 167212c028f9SKris Buschelman break; 16738c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1674d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1675d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1676d71ae5a4SJacob Faibussowitsch break; 1677d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1678d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1679d71ae5a4SJacob Faibussowitsch break; 1680c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1681ffa07934SHong Zhang case MAT_SPD: 168277e54ba9SKris Buschelman case MAT_SYMMETRIC: 168377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1684bf108f30SBarry Smith case MAT_HERMITIAN: 1685bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1686b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1687b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1688b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 16899725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 169077e54ba9SKris Buschelman break; 1691d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1692d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1693d71ae5a4SJacob Faibussowitsch break; 1694957cac9fSHong Zhang case MAT_STRUCTURE_ONLY: 1695957cac9fSHong Zhang /* The option is handled directly by MatSetOption() */ 1696957cac9fSHong Zhang break; 1697d71ae5a4SJacob Faibussowitsch default: 1698d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 16993a40ed3dSBarry Smith } 17003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1701c74985f6SBarry Smith } 1702c74985f6SBarry Smith 1703d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1704d71ae5a4SJacob Faibussowitsch { 1705154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 170687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1707d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1708d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1709b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 171039e00950SLois Curfman McInnes 17113a40ed3dSBarry Smith PetscFunctionBegin; 171228b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17137a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17147a0afa10SBarry Smith 171570f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17167a0afa10SBarry Smith /* 17177a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17187a0afa10SBarry Smith */ 17197a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1720b1d57f15SBarry Smith PetscInt max = 1, tmp; 1721d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17227a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17232205254eSKarl Rupp if (max < tmp) max = tmp; 17247a0afa10SBarry Smith } 17259566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17267a0afa10SBarry Smith } 17277a0afa10SBarry Smith 1728aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1729abc0e9e4SLois Curfman McInnes lrow = row - rstart; 173039e00950SLois Curfman McInnes 17319371c9d4SSatish Balay pvA = &vworkA; 17329371c9d4SSatish Balay pcA = &cworkA; 17339371c9d4SSatish Balay pvB = &vworkB; 17349371c9d4SSatish Balay pcB = &cworkB; 17359371c9d4SSatish Balay if (!v) { 17369371c9d4SSatish Balay pvA = NULL; 17379371c9d4SSatish Balay pvB = NULL; 17389371c9d4SSatish Balay } 17399371c9d4SSatish Balay if (!idx) { 17409371c9d4SSatish Balay pcA = NULL; 17419371c9d4SSatish Balay if (!v) pcB = NULL; 17429371c9d4SSatish Balay } 17439566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17449566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1745154123eaSLois Curfman McInnes nztot = nzA + nzB; 1746154123eaSLois Curfman McInnes 174770f0671dSBarry Smith cmap = mat->garray; 1748154123eaSLois Curfman McInnes if (v || idx) { 1749154123eaSLois Curfman McInnes if (nztot) { 1750154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1751b1d57f15SBarry Smith PetscInt imark = -1; 1752154123eaSLois Curfman McInnes if (v) { 175370f0671dSBarry Smith *v = v_p = mat->rowvalues; 175439e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 175570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1756154123eaSLois Curfman McInnes else break; 1757154123eaSLois Curfman McInnes } 1758154123eaSLois Curfman McInnes imark = i; 175970f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 176070f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1761154123eaSLois Curfman McInnes } 1762154123eaSLois Curfman McInnes if (idx) { 176370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 176470f0671dSBarry Smith if (imark > -1) { 1765ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 176670f0671dSBarry Smith } else { 1767154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 176870f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1769154123eaSLois Curfman McInnes else break; 1770154123eaSLois Curfman McInnes } 1771154123eaSLois Curfman McInnes imark = i; 177270f0671dSBarry Smith } 177370f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 177470f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 177539e00950SLois Curfman McInnes } 17763f97c4b0SBarry Smith } else { 1777f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1778f4259b30SLisandro Dalcin if (v) *v = NULL; 17791ca473b0SSatish Balay } 1780154123eaSLois Curfman McInnes } 178139e00950SLois Curfman McInnes *nz = nztot; 17829566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17839566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 178539e00950SLois Curfman McInnes } 178639e00950SLois Curfman McInnes 1787d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1788d71ae5a4SJacob Faibussowitsch { 17897a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 17903a40ed3dSBarry Smith 17913a40ed3dSBarry Smith PetscFunctionBegin; 179228b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 17937a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179539e00950SLois Curfman McInnes } 179639e00950SLois Curfman McInnes 1797ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1798d71ae5a4SJacob Faibussowitsch { 1799855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1800ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1801d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1802329f5518SBarry Smith PetscReal sum = 0.0; 1803fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 18046497c311SBarry Smith PetscMPIInt iN; 180504ca555eSLois Curfman McInnes 18063a40ed3dSBarry Smith PetscFunctionBegin; 180717699dbbSLois Curfman McInnes if (aij->size == 1) { 18089566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 180937fa93a5SLois Curfman McInnes } else { 18109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 181204ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1813fff043a9SJunchao Zhang v = amata; 181404ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18159371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18169371c9d4SSatish Balay v++; 181704ca555eSLois Curfman McInnes } 1818fff043a9SJunchao Zhang v = bmata; 181904ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18209371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18219371c9d4SSatish Balay v++; 182204ca555eSLois Curfman McInnes } 1823462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18248f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18259566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18263a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1827329f5518SBarry Smith PetscReal *tmp, *tmp2; 1828b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18299566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 18309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2)); 183104ca555eSLois Curfman McInnes *norm = 0.0; 18329371c9d4SSatish Balay v = amata; 18339371c9d4SSatish Balay jj = amat->j; 183404ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18359371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18369371c9d4SSatish Balay v++; 183704ca555eSLois Curfman McInnes } 18389371c9d4SSatish Balay v = bmata; 18399371c9d4SSatish Balay jj = bmat->j; 184004ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18419371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18429371c9d4SSatish Balay v++; 184304ca555eSLois Curfman McInnes } 18446497c311SBarry Smith PetscCall(PetscMPIIntCast(mat->cmap->N, &iN)); 1845462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(tmp, tmp2, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1846d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 184704ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 184804ca555eSLois Curfman McInnes } 18499566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18509566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 18519566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18523a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1853329f5518SBarry Smith PetscReal ntemp = 0.0; 1854d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18558e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 185604ca555eSLois Curfman McInnes sum = 0.0; 185704ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18589371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18599371c9d4SSatish Balay v++; 186004ca555eSLois Curfman McInnes } 18618e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186204ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18639371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18649371c9d4SSatish Balay v++; 186504ca555eSLois Curfman McInnes } 1866515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 186704ca555eSLois Curfman McInnes } 1868462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18699566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1870ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18719566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187337fa93a5SLois Curfman McInnes } 18743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1875855ac2c5SLois Curfman McInnes } 1876855ac2c5SLois Curfman McInnes 1877ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1878d71ae5a4SJacob Faibussowitsch { 1879a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1880a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1881071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1882071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1883a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1884ce496241SStefano Zampini const MatScalar *pbv, *bv; 1885b7c46309SBarry Smith 18863a40ed3dSBarry Smith PetscFunctionBegin; 18877fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18889371c9d4SSatish Balay ma = A->rmap->n; 18899371c9d4SSatish Balay na = A->cmap->n; 18909371c9d4SSatish Balay mb = a->B->rmap->n; 18919371c9d4SSatish Balay nb = a->B->cmap->n; 18929371c9d4SSatish Balay ai = Aloc->i; 18939371c9d4SSatish Balay aj = Aloc->j; 18949371c9d4SSatish Balay bi = Bloc->i; 18959371c9d4SSatish Balay bj = Bloc->j; 1896fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 189780bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 189880bcc5a1SJed Brown PetscSFNode *oloc; 1899713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190080bcc5a1SJed Brown 19019566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190280bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19039566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1904cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 190580bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19069566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 190780bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 190880bcc5a1SJed Brown /* map those to global */ 19099566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19109566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19119566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19129566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191357168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 191457168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19159566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1916d4bb536fSBarry Smith 19179566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19189566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19199566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19209566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19219566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19229566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1923fc4dec0aSBarry Smith } else { 1924fc4dec0aSBarry Smith B = *matout; 19259566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1926fc4dec0aSBarry Smith } 1927b7c46309SBarry Smith 1928f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1929a8661f62Sandi selinger A_diag = a->A; 1930a8661f62Sandi selinger B_diag = &b->A; 1931a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1932a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1933a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1934a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1935f79cb1a0Sandi selinger 1936f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1937ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1938f79cb1a0Sandi selinger 19394cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1940a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19417fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19429566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1943f79cb1a0Sandi selinger 1944b7c46309SBarry Smith /* copy over the B part */ 19459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1947ce496241SStefano Zampini pbv = bv; 1948d0f46423SBarry Smith row = A->rmap->rstart; 19492205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195061a2fbbaSHong Zhang cols_tmp = cols; 1951da668accSHong Zhang for (i = 0; i < mb; i++) { 1952da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19539566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19542205254eSKarl Rupp row++; 1955720a2405SPierre Jolivet if (pbv) pbv += ncol; 1956720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1957b7c46309SBarry Smith } 19589566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1960fc73b1b3SBarry Smith 19619566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19629566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1963cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19640de55854SLois Curfman McInnes *matout = B; 19650de55854SLois Curfman McInnes } else { 19669566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19670de55854SLois Curfman McInnes } 19683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1969b7c46309SBarry Smith } 1970b7c46309SBarry Smith 1971ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1972d71ae5a4SJacob Faibussowitsch { 19734b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19744b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1975b1d57f15SBarry Smith PetscInt s1, s2, s3; 1976a008b906SSatish Balay 19773a40ed3dSBarry Smith PetscFunctionBegin; 19789566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19794b967eb1SSatish Balay if (rr) { 19809566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198108401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19824b967eb1SSatish Balay /* Overlap communication with computation. */ 19839566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1984a008b906SSatish Balay } 19854b967eb1SSatish Balay if (ll) { 19869566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 198708401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1988dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19894b967eb1SSatish Balay } 19904b967eb1SSatish Balay /* scale the diagonal block */ 1991dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19924b967eb1SSatish Balay 19934b967eb1SSatish Balay if (rr) { 19944b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 19959566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1996dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 19974b967eb1SSatish Balay } 19983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1999a008b906SSatish Balay } 2000a008b906SSatish Balay 2001ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2002d71ae5a4SJacob Faibussowitsch { 2003bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20043a40ed3dSBarry Smith 20053a40ed3dSBarry Smith PetscFunctionBegin; 20069566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2008bb5a7306SBarry Smith } 2009bb5a7306SBarry Smith 2010ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2011d71ae5a4SJacob Faibussowitsch { 2012d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2013d4bb536fSBarry Smith Mat a, b, c, d; 2014ace3abfcSBarry Smith PetscBool flg; 2015d4bb536fSBarry Smith 20163a40ed3dSBarry Smith PetscFunctionBegin; 20179371c9d4SSatish Balay a = matA->A; 20189371c9d4SSatish Balay b = matA->B; 20199371c9d4SSatish Balay c = matB->A; 20209371c9d4SSatish Balay d = matB->B; 2021d4bb536fSBarry Smith 20229566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202348a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 2024462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2026d4bb536fSBarry Smith } 2027d4bb536fSBarry Smith 2028ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2029d71ae5a4SJacob Faibussowitsch { 2030cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2031cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2032cb5b572fSBarry Smith 2033cb5b572fSBarry Smith PetscFunctionBegin; 203433f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 203533f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2036cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2037cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2038cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2039cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2040cb5b572fSBarry Smith then copying the submatrices */ 20419566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2042cb5b572fSBarry Smith } else { 20439566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20449566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2045cb5b572fSBarry Smith } 20469566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2048cb5b572fSBarry Smith } 2049cb5b572fSBarry Smith 2050001ddc4fSHong Zhang /* 2051001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2052001ddc4fSHong Zhang have different nonzero structure. 2053001ddc4fSHong Zhang */ 2054d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2055d71ae5a4SJacob Faibussowitsch { 2056001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 205795b7e79eSJed Brown 205895b7e79eSJed Brown PetscFunctionBegin; 205995b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206095b7e79eSJed Brown for (i = 0; i < m; i++) { 20618e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2062001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2063001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 206495b7e79eSJed Brown nnz[i] = 0; 206595b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2066001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2067001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 206895b7e79eSJed Brown nnz[i]++; 206995b7e79eSJed Brown } 207095b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207195b7e79eSJed Brown } 20723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207395b7e79eSJed Brown } 207495b7e79eSJed Brown 2075001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2076d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2077d71ae5a4SJacob Faibussowitsch { 2078001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2079001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2080001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2081001ddc4fSHong Zhang 2082001ddc4fSHong Zhang PetscFunctionBegin; 20839566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2085001ddc4fSHong Zhang } 2086001ddc4fSHong Zhang 2087ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2088d71ae5a4SJacob Faibussowitsch { 2089ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2090ac90fabeSBarry Smith 2091ac90fabeSBarry Smith PetscFunctionBegin; 2092ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20939566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 20949566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2095ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 20969566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2097ac90fabeSBarry Smith } else { 20989f5f6813SShri Abhyankar Mat B; 20999f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2100d9d719b4SStefano Zampini 21019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21039566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21049566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21059566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21069566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21079566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21089566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21099566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21109566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21119566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21129566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21139566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2114ac90fabeSBarry Smith } 21153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2116ac90fabeSBarry Smith } 2117ac90fabeSBarry Smith 21182726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2119354c94deSBarry Smith 2120ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2121d71ae5a4SJacob Faibussowitsch { 21225f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21235f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2124354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2125354c94deSBarry Smith 21269566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21279566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21285f80ce2aSJacob Faibussowitsch } 21293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2130354c94deSBarry Smith } 2131354c94deSBarry Smith 2132ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2133d71ae5a4SJacob Faibussowitsch { 213499cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 213599cafbc1SBarry Smith 213699cafbc1SBarry Smith PetscFunctionBegin; 21379566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21389566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214099cafbc1SBarry Smith } 214199cafbc1SBarry Smith 2142ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2143d71ae5a4SJacob Faibussowitsch { 214499cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214599cafbc1SBarry Smith 214699cafbc1SBarry Smith PetscFunctionBegin; 21479566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21489566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215099cafbc1SBarry Smith } 215199cafbc1SBarry Smith 2152ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2153d71ae5a4SJacob Faibussowitsch { 2154c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2155475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 215662e5df07SMark Adams PetscScalar *vv; 2157475b8b61SHong Zhang Vec vB, vA; 215862e5df07SMark Adams const PetscScalar *va, *vb; 2159c91732d9SHong Zhang 2160c91732d9SHong Zhang PetscFunctionBegin; 2161c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21629566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2163475b8b61SHong Zhang 216462e5df07SMark Adams PetscCall(VecGetArrayRead(vA, &va)); 2165c91732d9SHong Zhang if (idx) { 2166475b8b61SHong Zhang for (i = 0; i < m; i++) { 2167d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2168c91732d9SHong Zhang } 2169c91732d9SHong Zhang } 2170c91732d9SHong Zhang 2171c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21739566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2174c91732d9SHong Zhang 21759566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21769566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2177475b8b61SHong Zhang for (i = 0; i < m; i++) { 2178c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2179475b8b61SHong Zhang vv[i] = vb[i]; 2180c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2181475b8b61SHong Zhang } else { 2182475b8b61SHong Zhang vv[i] = va[i]; 21839371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2184c91732d9SHong Zhang } 2185c91732d9SHong Zhang } 218662e5df07SMark Adams PetscCall(VecRestoreArrayWrite(v, &vv)); 218762e5df07SMark Adams PetscCall(VecRestoreArrayRead(vA, &va)); 21889566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21899566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21909566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2193c91732d9SHong Zhang } 2194c91732d9SHong Zhang 2195eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2196eede4a3fSMark Adams { 2197eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2198eede4a3fSMark Adams Vec vB, vA; 2199eede4a3fSMark Adams 2200eede4a3fSMark Adams PetscFunctionBegin; 2201c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2202eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2203c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2204eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2205eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2206eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2207eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2208eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2209eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2210eede4a3fSMark Adams } 2211eede4a3fSMark Adams 2212ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2213d71ae5a4SJacob Faibussowitsch { 2214f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2215f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2216f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2217f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2218f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2219f07e67edSHong Zhang Vec diagV, offdiagV; 2220ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2221ce496241SStefano Zampini const PetscScalar *ba, *bav; 2222f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2223f07e67edSHong Zhang Mat B = mat->B; 2224f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2225c87e5d42SMatthew Knepley 2226c87e5d42SMatthew Knepley PetscFunctionBegin; 2227f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2228f07e67edSHong Zhang if (A->cmap->N == n) { 22299566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22309566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22319566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22329566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22339566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2235f07e67edSHong Zhang } else if (n == 0) { 2236f07e67edSHong Zhang if (m) { 22379566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22389371c9d4SSatish Balay for (r = 0; r < m; r++) { 22399371c9d4SSatish Balay a[r] = 0.0; 22409371c9d4SSatish Balay if (idx) idx[r] = -1; 22419371c9d4SSatish Balay } 22429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2243f07e67edSHong Zhang } 22443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2245f07e67edSHong Zhang } 2246f07e67edSHong Zhang 22479566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22489566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22499566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22509566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2251f07e67edSHong Zhang 2252f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2254ce496241SStefano Zampini ba = bav; 2255f07e67edSHong Zhang bi = b->i; 2256f07e67edSHong Zhang bj = b->j; 22579566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2258f07e67edSHong Zhang for (r = 0; r < m; r++) { 2259f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2260f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22619371c9d4SSatish Balay offdiagA[r] = *ba; 22629371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2263f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2264f07e67edSHong Zhang offdiagA[r] = 0.0; 2265f07e67edSHong Zhang 2266f07e67edSHong Zhang /* Find first hole in the cmap */ 2267f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2268f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2269f07e67edSHong Zhang if (col > j && j < cstart) { 2270f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2271f07e67edSHong Zhang break; 2272f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2273f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2274f07e67edSHong Zhang break; 2275f07e67edSHong Zhang } 2276f07e67edSHong Zhang } 22774e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2278f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2279f07e67edSHong Zhang if (ncols == 0) { 2280f07e67edSHong Zhang if (cstart) { 2281f07e67edSHong Zhang offdiagIdx[r] = 0; 2282f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2283f07e67edSHong Zhang } else { /* ncols > 0 */ 2284f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2285f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2286f07e67edSHong Zhang } 2287f07e67edSHong Zhang } 2288f07e67edSHong Zhang } 2289f07e67edSHong Zhang 2290f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22919371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22929371c9d4SSatish Balay offdiagA[r] = *ba; 22939371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 22949371c9d4SSatish Balay } 22959371c9d4SSatish Balay ba++; 22969371c9d4SSatish Balay bj++; 2297f07e67edSHong Zhang } 2298f07e67edSHong Zhang } 2299f07e67edSHong Zhang 23009566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23019566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2302f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2303f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2304f07e67edSHong Zhang a[r] = diagA[r]; 2305f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2306f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2307f07e67edSHong Zhang a[r] = diagA[r]; 2308c87e5d42SMatthew Knepley if (idx) { 2309f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2310f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2311f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2312f07e67edSHong Zhang } 2313f07e67edSHong Zhang } else { 2314f07e67edSHong Zhang a[r] = offdiagA[r]; 2315f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2316c87e5d42SMatthew Knepley } 2317c87e5d42SMatthew Knepley } 23189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23199566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23209566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23219566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23239566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23249566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2326c87e5d42SMatthew Knepley } 2327c87e5d42SMatthew Knepley 2328ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2329d71ae5a4SJacob Faibussowitsch { 233003bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2331fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2332fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233303bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 233403bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 233503bc72f1SMatthew Knepley Vec diagV, offdiagV; 2336ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2337ce496241SStefano Zampini const PetscScalar *ba, *bav; 2338fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2339fa213d2fSHong Zhang Mat B = mat->B; 2340fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234103bc72f1SMatthew Knepley 234203bc72f1SMatthew Knepley PetscFunctionBegin; 2343fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2344fa213d2fSHong Zhang if (A->cmap->N == n) { 23459566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23469566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23479566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23499566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2351fa213d2fSHong Zhang } else if (n == 0) { 2352fa213d2fSHong Zhang if (m) { 23539566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23549371c9d4SSatish Balay for (r = 0; r < m; r++) { 23559371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23569371c9d4SSatish Balay if (idx) idx[r] = -1; 23579371c9d4SSatish Balay } 23589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2359fa213d2fSHong Zhang } 23603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2361fa213d2fSHong Zhang } 2362fa213d2fSHong Zhang 23639566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23649566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23659566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23669566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2367fa213d2fSHong Zhang 2368fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2370ce496241SStefano Zampini ba = bav; 2371fa213d2fSHong Zhang bi = b->i; 2372fa213d2fSHong Zhang bj = b->j; 23739566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2374fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2375fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2376fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23779371c9d4SSatish Balay offdiagA[r] = *ba; 23789371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2379fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2380fa213d2fSHong Zhang offdiagA[r] = 0.0; 2381fa213d2fSHong Zhang 2382fa213d2fSHong Zhang /* Find first hole in the cmap */ 2383fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2384fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2385fa213d2fSHong Zhang if (col > j && j < cstart) { 2386fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2387fa213d2fSHong Zhang break; 2388fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2389fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2390fa213d2fSHong Zhang break; 2391fa213d2fSHong Zhang } 2392fa213d2fSHong Zhang } 23934e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2394fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2395fa213d2fSHong Zhang if (ncols == 0) { 2396fa213d2fSHong Zhang if (cstart) { 2397fa213d2fSHong Zhang offdiagIdx[r] = 0; 2398fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2399fa213d2fSHong Zhang } else { /* ncols > 0 */ 2400fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2401fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2402fa213d2fSHong Zhang } 2403fa213d2fSHong Zhang } 2404fa213d2fSHong Zhang } 2405fa213d2fSHong Zhang 2406fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24079371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24089371c9d4SSatish Balay offdiagA[r] = *ba; 24099371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24109371c9d4SSatish Balay } 24119371c9d4SSatish Balay ba++; 24129371c9d4SSatish Balay bj++; 2413fa213d2fSHong Zhang } 2414fa213d2fSHong Zhang } 2415fa213d2fSHong Zhang 24169566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24179566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2418fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2419fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242003bc72f1SMatthew Knepley a[r] = diagA[r]; 2421fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2422fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2423fa213d2fSHong Zhang a[r] = diagA[r]; 2424fa213d2fSHong Zhang if (idx) { 2425fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 242603bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2427fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2428fa213d2fSHong Zhang } 242903bc72f1SMatthew Knepley } else { 243003bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2431fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243203bc72f1SMatthew Knepley } 243303bc72f1SMatthew Knepley } 24349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24369566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24409566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244203bc72f1SMatthew Knepley } 244303bc72f1SMatthew Knepley 2444ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2445d71ae5a4SJacob Faibussowitsch { 2446c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24471a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24481a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2449c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2450c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2451c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2452ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2453ce496241SStefano Zampini const PetscScalar *ba, *bav; 24541a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24551a254869SHong Zhang Mat B = mat->B; 24561a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2457c87e5d42SMatthew Knepley 2458c87e5d42SMatthew Knepley PetscFunctionBegin; 24591a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24601a254869SHong Zhang if (A->cmap->N == n) { 24619566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24629566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24639566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24671a254869SHong Zhang } else if (n == 0) { 24681a254869SHong Zhang if (m) { 24699566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24709371c9d4SSatish Balay for (r = 0; r < m; r++) { 24719371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24729371c9d4SSatish Balay if (idx) idx[r] = -1; 24739371c9d4SSatish Balay } 24749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24751a254869SHong Zhang } 24763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24771a254869SHong Zhang } 24781a254869SHong Zhang 24799566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24809566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24819566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24829566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24831a254869SHong Zhang 24841a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2486ce496241SStefano Zampini ba = bav; 24871a254869SHong Zhang bi = b->i; 24881a254869SHong Zhang bj = b->j; 24899566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24901a254869SHong Zhang for (r = 0; r < m; r++) { 24911a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24921a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24939371c9d4SSatish Balay offdiagA[r] = *ba; 24949371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 24951a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 24961a254869SHong Zhang offdiagA[r] = 0.0; 24971a254869SHong Zhang 24981a254869SHong Zhang /* Find first hole in the cmap */ 24991a254869SHong Zhang for (j = 0; j < ncols; j++) { 25001a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25011a254869SHong Zhang if (col > j && j < cstart) { 25021a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25031a254869SHong Zhang break; 25041a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25051a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25061a254869SHong Zhang break; 25071a254869SHong Zhang } 25081a254869SHong Zhang } 25094e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25101a254869SHong Zhang /* a hole is outside compressed Bcols */ 25111a254869SHong Zhang if (ncols == 0) { 25121a254869SHong Zhang if (cstart) { 25131a254869SHong Zhang offdiagIdx[r] = 0; 25141a254869SHong Zhang } else offdiagIdx[r] = cend; 25151a254869SHong Zhang } else { /* ncols > 0 */ 25161a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25171a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25181a254869SHong Zhang } 25191a254869SHong Zhang } 25201a254869SHong Zhang } 25211a254869SHong Zhang 25221a254869SHong Zhang for (j = 0; j < ncols; j++) { 25239371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25249371c9d4SSatish Balay offdiagA[r] = *ba; 25259371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25269371c9d4SSatish Balay } 25279371c9d4SSatish Balay ba++; 25289371c9d4SSatish Balay bj++; 25291a254869SHong Zhang } 25301a254869SHong Zhang } 25311a254869SHong Zhang 25329566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25339566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25341a254869SHong Zhang for (r = 0; r < m; ++r) { 25351a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2536c87e5d42SMatthew Knepley a[r] = diagA[r]; 25371a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25381a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25391a254869SHong Zhang a[r] = diagA[r]; 25401a254869SHong Zhang if (idx) { 25411a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2542c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25431a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25441a254869SHong Zhang } 2545c87e5d42SMatthew Knepley } else { 2546c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25471a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2548c87e5d42SMatthew Knepley } 2549c87e5d42SMatthew Knepley } 25509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25539566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25559566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25569566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2558c87e5d42SMatthew Knepley } 2559c87e5d42SMatthew Knepley 2560d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2561d71ae5a4SJacob Faibussowitsch { 2562f6d58c54SBarry Smith Mat *dummy; 25635494a064SHong Zhang 25645494a064SHong Zhang PetscFunctionBegin; 25659566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2566f6d58c54SBarry Smith *newmat = *dummy; 25679566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25695494a064SHong Zhang } 25705494a064SHong Zhang 2571ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2572d71ae5a4SJacob Faibussowitsch { 2573bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2574bbead8a2SBarry Smith 2575bbead8a2SBarry Smith PetscFunctionBegin; 25769566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25777b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2579bbead8a2SBarry Smith } 2580bbead8a2SBarry Smith 2581d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2582d71ae5a4SJacob Faibussowitsch { 258373a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 258473a71a0fSBarry Smith 258573a71a0fSBarry Smith PetscFunctionBegin; 258608401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25879566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2588679944adSJunchao Zhang if (x->assembled) { 25899566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2590679944adSJunchao Zhang } else { 25919566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2592679944adSJunchao Zhang } 25939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 25949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 25953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 259673a71a0fSBarry Smith } 2597bbead8a2SBarry Smith 2598ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2599d71ae5a4SJacob Faibussowitsch { 2600b1b1104fSBarry Smith PetscFunctionBegin; 2601b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2602b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2604b1b1104fSBarry Smith } 2605b1b1104fSBarry Smith 2606b1b1104fSBarry Smith /*@ 2607f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2608f2afee66SBarry Smith 26092ef1f0ffSBarry Smith Not Collective 2610f2afee66SBarry Smith 2611f2afee66SBarry Smith Input Parameter: 2612f2afee66SBarry Smith . A - the matrix 2613f2afee66SBarry Smith 2614f2afee66SBarry Smith Output Parameter: 2615f2afee66SBarry Smith . nz - the number of nonzeros 2616f2afee66SBarry Smith 2617f2afee66SBarry Smith Level: advanced 2618f2afee66SBarry Smith 2619fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2620f2afee66SBarry Smith @*/ 2621d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2622d71ae5a4SJacob Faibussowitsch { 2623f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2624f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2625dfebb78cSStefano Zampini PetscBool isaij; 2626f2afee66SBarry Smith 2627f2afee66SBarry Smith PetscFunctionBegin; 2628dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2629dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2630f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2632f2afee66SBarry Smith } 2633f2afee66SBarry Smith 2634f2afee66SBarry Smith /*@ 2635b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2636b1b1104fSBarry Smith 2637c3339decSBarry Smith Collective 2638b1b1104fSBarry Smith 2639b1b1104fSBarry Smith Input Parameters: 2640b1b1104fSBarry Smith + A - the matrix 264111a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2642b1b1104fSBarry Smith 264396a0c994SBarry Smith Level: advanced 264496a0c994SBarry Smith 2645fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2646b1b1104fSBarry Smith @*/ 2647d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2648d71ae5a4SJacob Faibussowitsch { 2649b1b1104fSBarry Smith PetscFunctionBegin; 2650cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2652b1b1104fSBarry Smith } 2653b1b1104fSBarry Smith 2654d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2655d71ae5a4SJacob Faibussowitsch { 2656b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2657b1b1104fSBarry Smith 2658b1b1104fSBarry Smith PetscFunctionBegin; 2659d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2660b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26619566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26621baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2663d0609cedSBarry Smith PetscOptionsHeadEnd(); 26643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2665b1b1104fSBarry Smith } 2666b1b1104fSBarry Smith 2667ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2668d71ae5a4SJacob Faibussowitsch { 26697d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2670c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26717d68702bSBarry Smith 26727d68702bSBarry Smith PetscFunctionBegin; 2673c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26749566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26755519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2676b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2678b83222d8SBarry Smith aij->nonew = nonew; 26797d68702bSBarry Smith } 26809566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26827d68702bSBarry Smith } 26837d68702bSBarry Smith 2684ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2685d71ae5a4SJacob Faibussowitsch { 26863b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26873b49f96aSBarry Smith 26883b49f96aSBarry Smith PetscFunctionBegin; 268908401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26909566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26913b49f96aSBarry Smith if (d) { 26923b49f96aSBarry Smith PetscInt rstart; 26939566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 26943b49f96aSBarry Smith *d += rstart; 26953b49f96aSBarry Smith } 26963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26973b49f96aSBarry Smith } 26983b49f96aSBarry Smith 2699ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2700d71ae5a4SJacob Faibussowitsch { 2701a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2702a8ee9fb5SBarry Smith 2703a8ee9fb5SBarry Smith PetscFunctionBegin; 27049566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2706a8ee9fb5SBarry Smith } 27073b49f96aSBarry Smith 270858c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2709dec0b466SHong Zhang { 2710dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2711dec0b466SHong Zhang 2712dec0b466SHong Zhang PetscFunctionBegin; 271358c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 271458c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2716dec0b466SHong Zhang } 2717dec0b466SHong Zhang 2718cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2719cda55fadSBarry Smith MatGetRow_MPIAIJ, 2720cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2721cda55fadSBarry Smith MatMult_MPIAIJ, 272297304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27237c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27247c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2725f4259b30SLisandro Dalcin NULL, 2726f4259b30SLisandro Dalcin NULL, 2727f4259b30SLisandro Dalcin NULL, 2728f4259b30SLisandro Dalcin /*10*/ NULL, 2729f4259b30SLisandro Dalcin NULL, 2730f4259b30SLisandro Dalcin NULL, 273141f059aeSBarry Smith MatSOR_MPIAIJ, 2732b7c46309SBarry Smith MatTranspose_MPIAIJ, 273397304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2734cda55fadSBarry Smith MatEqual_MPIAIJ, 2735cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2736cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2737cda55fadSBarry Smith MatNorm_MPIAIJ, 273897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2739cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2740cda55fadSBarry Smith MatSetOption_MPIAIJ, 2741cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2742d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2743f4259b30SLisandro Dalcin NULL, 2744f4259b30SLisandro Dalcin NULL, 2745f4259b30SLisandro Dalcin NULL, 2746f4259b30SLisandro Dalcin NULL, 274726cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2748f4259b30SLisandro Dalcin NULL, 2749f4259b30SLisandro Dalcin NULL, 2750a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2751f4259b30SLisandro Dalcin NULL, 2752d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2753f4259b30SLisandro Dalcin NULL, 2754f4259b30SLisandro Dalcin NULL, 2755f4259b30SLisandro Dalcin NULL, 2756f4259b30SLisandro Dalcin NULL, 2757d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27587dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2759cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2760cda55fadSBarry Smith MatGetValues_MPIAIJ, 2761cb5b572fSBarry Smith MatCopy_MPIAIJ, 2762d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2763cda55fadSBarry Smith MatScale_MPIAIJ, 27647d68702bSBarry Smith MatShift_MPIAIJ, 276599e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2766564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 276773a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27688a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27698a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2770f4259b30SLisandro Dalcin NULL, 2771f4259b30SLisandro Dalcin NULL, 277293dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2773f4259b30SLisandro Dalcin NULL, 2774cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 277572e6a0cfSJed Brown MatPermute_MPIAIJ, 2776f4259b30SLisandro Dalcin NULL, 27777dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2778e03a110bSBarry Smith MatDestroy_MPIAIJ, 2779e03a110bSBarry Smith MatView_MPIAIJ, 2780f4259b30SLisandro Dalcin NULL, 2781f4259b30SLisandro Dalcin NULL, 2782f4259b30SLisandro Dalcin /*64*/ NULL, 2783f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2784f4259b30SLisandro Dalcin NULL, 2785f4259b30SLisandro Dalcin NULL, 2786f4259b30SLisandro Dalcin NULL, 2787d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2788c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2789f4259b30SLisandro Dalcin NULL, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 2792f4259b30SLisandro Dalcin NULL, 27933acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2794b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2795f4259b30SLisandro Dalcin NULL, 2796f4259b30SLisandro Dalcin NULL, 2797f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2798f4259b30SLisandro Dalcin /*80*/ NULL, 2799f4259b30SLisandro Dalcin NULL, 2800f4259b30SLisandro Dalcin NULL, 28015bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 28026cff0a6bSPierre Jolivet NULL, 2803f4259b30SLisandro Dalcin NULL, 2804f4259b30SLisandro Dalcin NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 2807f4259b30SLisandro Dalcin /*89*/ NULL, 2808f4259b30SLisandro Dalcin NULL, 280926be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2810f4259b30SLisandro Dalcin NULL, 2811f4259b30SLisandro Dalcin NULL, 2812cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2813f4259b30SLisandro Dalcin NULL, 2814f4259b30SLisandro Dalcin NULL, 2815f4259b30SLisandro Dalcin NULL, 2816b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28174222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2818f4259b30SLisandro Dalcin NULL, 2819f4259b30SLisandro Dalcin NULL, 28202fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2821f4259b30SLisandro Dalcin NULL, 2822d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 282399cafbc1SBarry Smith MatRealPart_MPIAIJ, 282469db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2825f4259b30SLisandro Dalcin NULL, 2826f4259b30SLisandro Dalcin NULL, 2827f4259b30SLisandro Dalcin /*109*/ NULL, 2828f4259b30SLisandro Dalcin NULL, 28295494a064SHong Zhang MatGetRowMin_MPIAIJ, 2830f4259b30SLisandro Dalcin NULL, 28313b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2832d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2833f4259b30SLisandro Dalcin NULL, 2834c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2835f4259b30SLisandro Dalcin NULL, 2836f4259b30SLisandro Dalcin NULL, 2837b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2838f4259b30SLisandro Dalcin NULL, 2839f4259b30SLisandro Dalcin NULL, 2840f4259b30SLisandro Dalcin NULL, 2841b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2842f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2843a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2844bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2845a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28467dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2847f4259b30SLisandro Dalcin /*129*/ NULL, 2848f4259b30SLisandro Dalcin NULL, 2849f4259b30SLisandro Dalcin NULL, 2850187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2851f4259b30SLisandro Dalcin NULL, 2852f4259b30SLisandro Dalcin /*134*/ NULL, 2853f4259b30SLisandro Dalcin NULL, 2854f4259b30SLisandro Dalcin NULL, 2855f4259b30SLisandro Dalcin NULL, 2856f4259b30SLisandro Dalcin NULL, 285746533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2858f4259b30SLisandro Dalcin NULL, 2859f4259b30SLisandro Dalcin NULL, 28609c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2861a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28624222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2863f4259b30SLisandro Dalcin /*145*/ NULL, 2864f4259b30SLisandro Dalcin NULL, 286572833a62Smarkadams4 NULL, 286672833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28672d776b49SBarry Smith NULL, 2868dec0b466SHong Zhang /*150*/ NULL, 2869eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28704cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 287142ce410bSJunchao Zhang NULL, 287242ce410bSJunchao Zhang NULL, 28734cc2b5b5SPierre Jolivet NULL}; 287436ce4990SBarry Smith 2875ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2876d71ae5a4SJacob Faibussowitsch { 28772e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28782e8a6d31SBarry Smith 28792e8a6d31SBarry Smith PetscFunctionBegin; 28809566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28819566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28832e8a6d31SBarry Smith } 28842e8a6d31SBarry Smith 2885ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2886d71ae5a4SJacob Faibussowitsch { 28872e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28882e8a6d31SBarry Smith 28892e8a6d31SBarry Smith PetscFunctionBegin; 28909566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28919566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28932e8a6d31SBarry Smith } 28948a729477SBarry Smith 2895d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2896d71ae5a4SJacob Faibussowitsch { 2897ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 28985d2a9ed1SStefano Zampini PetscMPIInt size; 2899a23d5eceSKris Buschelman 2900a23d5eceSKris Buschelman PetscFunctionBegin; 2901ad79cf63SBarry Smith if (B->hash_active) { 2902aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2903ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2904ad79cf63SBarry Smith } 29059566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29069566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2907899cda47SBarry Smith 2908cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2909eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2910cb7b82ddSBarry Smith #else 29119566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2912cb7b82ddSBarry Smith #endif 29139566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29159566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2916cb7b82ddSBarry Smith 29179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2918c508b908SBarry Smith 2919c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29219566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29239566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29249566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2925c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2926cb7b82ddSBarry Smith 2927c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2928ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29299566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29319566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29329566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2933c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2934899cda47SBarry Smith 29359566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2937526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2938cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 293915001458SStefano Zampini B->assembled = PETSC_FALSE; 29403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2941a23d5eceSKris Buschelman } 2942a23d5eceSKris Buschelman 2943ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2944d71ae5a4SJacob Faibussowitsch { 2945ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2946*4c51d546SAlexander PetscBool ondiagreset, offdiagreset, memoryreset; 2947846b4da1SFande Kong 2948846b4da1SFande Kong PetscFunctionBegin; 2949846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 2950*4c51d546SAlexander PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()"); 2951*4c51d546SAlexander if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS); 2952*4c51d546SAlexander 2953*4c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset)); 2954*4c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset)); 2955*4c51d546SAlexander memoryreset = (PetscBool)(ondiagreset || offdiagreset); 2956*4c51d546SAlexander PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPIU_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B))); 2957*4c51d546SAlexander if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS); 2958*4c51d546SAlexander 29599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2961*4c51d546SAlexander PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled"); 2962*4c51d546SAlexander PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE)); 29639566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2964846b4da1SFande Kong 2965846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2966846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2967846b4da1SFande Kong B->assembled = PETSC_FALSE; 2968b3a35320SAlex Lindsay /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */ 2969b3a35320SAlex Lindsay PetscCall(PetscObjectStateIncrease((PetscObject)B)); 29703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2971846b4da1SFande Kong } 2972846b4da1SFande Kong 2973d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2974d71ae5a4SJacob Faibussowitsch { 2975d6dfbf8fSBarry Smith Mat mat; 2976416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2977d6dfbf8fSBarry Smith 29783a40ed3dSBarry Smith PetscFunctionBegin; 2979f4259b30SLisandro Dalcin *newmat = NULL; 29809566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29819566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29829566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29839566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2984273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2985e1b6402fSHong Zhang 2986d5f3da31SBarry Smith mat->factortype = matin->factortype; 2987501880eeSStefano Zampini mat->assembled = matin->assembled; 2988e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2989d6dfbf8fSBarry Smith 299017699dbbSLois Curfman McInnes a->size = oldmat->size; 299117699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2992e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2993e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2994501880eeSStefano Zampini a->rowindices = NULL; 2995501880eeSStefano Zampini a->rowvalues = NULL; 2996bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2997d6dfbf8fSBarry Smith 29989566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29999566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3000420957c1SBarry Smith if (matin->hash_active) { 3001420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3002420957c1SBarry Smith } else { 3003420957c1SBarry Smith mat->preallocated = matin->preallocated; 30042ee70a88SLois Curfman McInnes if (oldmat->colmap) { 3005aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3006eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3007b1fc9764SSatish Balay #else 30089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3010b1fc9764SSatish Balay #endif 3011501880eeSStefano Zampini } else a->colmap = NULL; 30123f41c07dSBarry Smith if (oldmat->garray) { 3013b1d57f15SBarry Smith PetscInt len; 3014d0f46423SBarry Smith len = oldmat->B->cmap->n; 30159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30169566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3017501880eeSStefano Zampini } else a->garray = NULL; 3018d6dfbf8fSBarry Smith 30190de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30200de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30210de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3022aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3023cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3024cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3025cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3026cff58d65SJunchao Zhang } 30279566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30289566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3029420957c1SBarry Smith } 30309566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30318a729477SBarry Smith *newmat = mat; 30323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30338a729477SBarry Smith } 3034416022c9SBarry Smith 3035d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3036d71ae5a4SJacob Faibussowitsch { 303752f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 303852f91c60SVaclav Hapla 303952f91c60SVaclav Hapla PetscFunctionBegin; 304052f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 304152f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3042c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30439566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30449566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30459566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 304652f91c60SVaclav Hapla if (isbinary) { 30479566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 304852f91c60SVaclav Hapla } else if (ishdf5) { 304952f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30509566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 305152f91c60SVaclav Hapla #else 305252f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 305352f91c60SVaclav Hapla #endif 305452f91c60SVaclav Hapla } else { 305598921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 305652f91c60SVaclav Hapla } 30573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 305852f91c60SVaclav Hapla } 305952f91c60SVaclav Hapla 3060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3061d71ae5a4SJacob Faibussowitsch { 30623ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30633ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30643ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30658fb81238SShri Abhyankar 30668fb81238SShri Abhyankar PetscFunctionBegin; 30679566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30688fb81238SShri Abhyankar 30693ea6fe3dSLisandro Dalcin /* read in matrix header */ 30709566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 307108401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30729371c9d4SSatish Balay M = header[1]; 30739371c9d4SSatish Balay N = header[2]; 30749371c9d4SSatish Balay nz = header[3]; 307508401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 307608401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 307708401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 307808ea439dSMark F. Adams 30793ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30809566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30813ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30823ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30833ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30849566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30859566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30868fb81238SShri Abhyankar 30873ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30889566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3089aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30908fb81238SShri Abhyankar 30913ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30929566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30949566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30959371c9d4SSatish Balay rowidxs[0] = 0; 30969371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 30971690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 3098462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 309908401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 310038b83642SBarry Smith } 310138b83642SBarry Smith 31023ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 31039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 31049566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 31059566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 31063ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31079566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31089566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31099566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31118fb81238SShri Abhyankar } 31128fb81238SShri Abhyankar 31133782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3114ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3115d71ae5a4SJacob Faibussowitsch { 31164aa3045dSJed Brown IS iscol_local; 3117c5e4d11fSDmitry Karpeev PetscBool isstride; 31189725ddffSPierre Jolivet PetscMPIInt gisstride = 0; 31193782ecc7SHong Zhang 31203782ecc7SHong Zhang PetscFunctionBegin; 31213782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31229566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31233782ecc7SHong Zhang 3124c5e4d11fSDmitry Karpeev if (isstride) { 3125c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31269566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31279566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31289566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 31299725ddffSPierre Jolivet if (mstart == start && mlen - mstart == len) gisstride = 1; 3130c5e4d11fSDmitry Karpeev } 31313782ecc7SHong Zhang 31329725ddffSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3133c5e4d11fSDmitry Karpeev if (gisstride) { 3134c5e4d11fSDmitry Karpeev PetscInt N; 31359566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31369566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31379566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31389566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3139c5e4d11fSDmitry Karpeev } else { 3140c5bfad50SMark F. Adams PetscInt cbs; 31419566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31429566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31439566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3144b79d0421SJed Brown } 31453782ecc7SHong Zhang 31463782ecc7SHong Zhang *isseq = iscol_local; 31473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3148c5e4d11fSDmitry Karpeev } 31498d2139bdSHong Zhang 3150ddfdf956SHong Zhang /* 31519c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31529c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3153ddfdf956SHong Zhang 3154ddfdf956SHong Zhang Input Parameters: 315527430b45SBarry Smith + mat - matrix 315627430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31579c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 315827430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3159ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 316027430b45SBarry Smith 316127430b45SBarry Smith Output Parameters: 316227430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 316327430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 316427430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 316527430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3166ddfdf956SHong Zhang */ 3167ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[]) 3168d71ae5a4SJacob Faibussowitsch { 3169040216a4SHong Zhang Vec x, cmap; 3170040216a4SHong Zhang const PetscInt *is_idx; 3171040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31729c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3173040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3174040216a4SHong Zhang Mat B = a->B; 3175040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3176a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31778b3fa1f7SHong Zhang MPI_Comm comm; 31783a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31793782ecc7SHong Zhang 31803782ecc7SHong Zhang PetscFunctionBegin; 31819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31829566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31838b3fa1f7SHong Zhang 3184ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31859566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31869566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31879566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31889566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31890a351717SHong Zhang 31909c988bcaSHong Zhang /* Get start indices */ 31919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3192ddfdf956SHong Zhang isstart -= ncols; 31939566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3194040216a4SHong Zhang 31959566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31969566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31979566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3199ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 32008b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3201ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 32029c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 32038b3fa1f7SHong Zhang } 32049566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 32059566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 32069566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32078b3fa1f7SHong Zhang 32089c988bcaSHong Zhang /* Get iscol_d */ 32099566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32109566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32119566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3212feb78a15SHong Zhang 32139c988bcaSHong Zhang /* Get isrow_d */ 32149566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3215feb78a15SHong Zhang rstart = mat->rmap->rstart; 32169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32179566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32189c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32199566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3220feb78a15SHong Zhang 32219566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32229566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32239566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3224feb78a15SHong Zhang 32259c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32269566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32279566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3228ddfdf956SHong Zhang 32299566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 323007250d77SHong Zhang 32319566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32329566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 323364efcef9SHong Zhang 32349c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3235ddfdf956SHong Zhang /* off-process column indices */ 32369c988bcaSHong Zhang count = 0; 32379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3239feb78a15SHong Zhang 32409566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32419566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32428b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3243f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32449c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32451c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32461c645242SHong Zhang count++; 32478b3fa1f7SHong Zhang } 32488b3fa1f7SHong Zhang } 32499566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32509566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 325107250d77SHong Zhang 32529566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3253b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3254b6d9b4e0SHong Zhang 32559566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32569c988bcaSHong Zhang *garray = cmap1; 32579c988bcaSHong Zhang 32589566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3262040216a4SHong Zhang } 3263040216a4SHong Zhang 3264b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3265d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3266d71ae5a4SJacob Faibussowitsch { 3267b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32681fd43edeSHong Zhang Mat M = NULL; 32693b00a383SHong Zhang MPI_Comm comm; 3270b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32713b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3272b20e2604SHong Zhang PetscInt n; 32733b00a383SHong Zhang 32743b00a383SHong Zhang PetscFunctionBegin; 32759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32763b00a383SHong Zhang 32773b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3278b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32799566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 328028b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32813b00a383SHong Zhang 32829566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 328328b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32843b00a383SHong Zhang 32859566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 328628b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32873b00a383SHong Zhang 3288b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3289b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32909566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 329248a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32953b00a383SHong Zhang 32963b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 32979c988bcaSHong Zhang const PetscInt *garray; 3298b20e2604SHong Zhang PetscInt BsubN; 32993b00a383SHong Zhang 3300b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 33019566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 33023b00a383SHong Zhang 3303b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 33049566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 33059566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 33063b00a383SHong Zhang 33079c988bcaSHong Zhang /* Create submatrix M */ 33089566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M)); 33093b00a383SHong Zhang 3310b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3311b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33127cfce09cSHong Zhang 33139566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3314b20e2604SHong Zhang n = asub->B->cmap->N; 3315b20e2604SHong Zhang if (BsubN > n) { 3316c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33177cfce09cSHong Zhang const PetscInt *idx; 33189c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33199566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33207cfce09cSHong Zhang 33219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33227cfce09cSHong Zhang j = 0; 33239566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3324b20e2604SHong Zhang for (i = 0; i < n; i++) { 33257cfce09cSHong Zhang if (j >= BsubN) break; 33269c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33277cfce09cSHong Zhang 33289c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33297cfce09cSHong Zhang idx_new[i] = idx[j++]; 333098921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33317cfce09cSHong Zhang } 33329566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33337cfce09cSHong Zhang 33349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33359566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33367cfce09cSHong Zhang 3337b20e2604SHong Zhang } else if (BsubN < n) { 333898921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3339b20e2604SHong Zhang } 33407cfce09cSHong Zhang 33419566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3342b20e2604SHong Zhang *submat = M; 33433b00a383SHong Zhang 3344e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33459566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33473b00a383SHong Zhang 33489566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33499566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33503b00a383SHong Zhang 33519566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33533b00a383SHong Zhang } 33543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33553b00a383SHong Zhang } 33563b00a383SHong Zhang 3357d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3358d71ae5a4SJacob Faibussowitsch { 33591358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33603782ecc7SHong Zhang PetscInt csize; 336118e627e3SHong Zhang PetscInt n, i, j, start, end; 33624a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33633782ecc7SHong Zhang MPI_Comm comm; 33643782ecc7SHong Zhang 33653782ecc7SHong Zhang PetscFunctionBegin; 3366bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3367a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33688f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33699566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3370d5761cdaSHong Zhang if (isrow_d) { 3371d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3372d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3373d5761cdaSHong Zhang } else { 33749566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3375d5761cdaSHong Zhang if (iscol_local) { 3376d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3377d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3378d5761cdaSHong Zhang } 3379d5761cdaSHong Zhang } 33808f69fa7bSHong Zhang } else { 3381e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 338218e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33839566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33843782ecc7SHong Zhang if (!n) { 338518e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33863782ecc7SHong Zhang } else { 33879566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33889566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3389ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33908f69fa7bSHong Zhang } 33913782ecc7SHong Zhang 3392e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 339318e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33949566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 339518e627e3SHong Zhang if (!n) { 339618e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 339718e627e3SHong Zhang } else { 33989566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 340018e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 340118e627e3SHong Zhang } 340218e627e3SHong Zhang 34039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3404462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 340518e627e3SHong Zhang sameRowDist = tsameDist[0]; 340618e627e3SHong Zhang } 340718e627e3SHong Zhang 340818e627e3SHong Zhang if (sameRowDist) { 3409b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34103b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34119566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3413b20e2604SHong Zhang } else { /* sameRowDist */ 34143b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34151358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34161358a193SHong Zhang PetscBool sorted; 34179566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34189566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34199566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 342008401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34211358a193SHong Zhang 34229566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34231358a193SHong Zhang if (sorted) { 34241358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34259566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34273782ecc7SHong Zhang } 34281358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 342948c0d076SHong Zhang IS iscol_sub; 34309566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 343148c0d076SHong Zhang if (iscol_sub) { 34329566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 343448c0d076SHong Zhang } 34351358a193SHong Zhang } 34361358a193SHong Zhang } 34371358a193SHong Zhang } 34383782ecc7SHong Zhang 3439bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34403782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34419566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 344228b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34433782ecc7SHong Zhang } else { 344448a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34451358a193SHong Zhang } 34463782ecc7SHong Zhang 34479566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34489566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34498f69fa7bSHong Zhang 3450b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34519566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3453b79d0421SJed Brown } 34543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34554aa3045dSJed Brown } 34564aa3045dSJed Brown 3457feb78a15SHong Zhang /*@C 345811a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3459feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3460feb78a15SHong Zhang 3461d083f849SBarry Smith Collective 3462feb78a15SHong Zhang 3463feb78a15SHong Zhang Input Parameters: 3464feb78a15SHong Zhang + comm - MPI communicator 3465feb78a15SHong Zhang . A - "diagonal" portion of matrix 3466b20e2604SHong Zhang . B - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine 34672ef1f0ffSBarry Smith - garray - global index of `B` columns 3468feb78a15SHong Zhang 3469feb78a15SHong Zhang Output Parameter: 34702ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 347127430b45SBarry Smith 3472feb78a15SHong Zhang Level: advanced 3473feb78a15SHong Zhang 3474feb78a15SHong Zhang Notes: 347511a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 347611a5261eSBarry Smith 34772ef1f0ffSBarry Smith `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore. 3478feb78a15SHong Zhang 34791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3480feb78a15SHong Zhang @*/ 3481d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat) 3482d71ae5a4SJacob Faibussowitsch { 3483feb78a15SHong Zhang Mat_MPIAIJ *maij; 3484e489de8fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data, *bnew; 3485a5348796SHong Zhang PetscInt *oi = b->i, *oj = b->j, i, nz, col; 3486ce496241SStefano Zampini const PetscScalar *oa; 3487e489de8fSHong Zhang Mat Bnew; 3488feb78a15SHong Zhang PetscInt m, n, N; 34894ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3490feb78a15SHong Zhang 3491feb78a15SHong Zhang PetscFunctionBegin; 34929566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 34939566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 349408401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 349537a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3496b6d9b4e0SHong Zhang /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */ 349708401ef6SPierre Jolivet /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */ 3498feb78a15SHong Zhang 3499e489de8fSHong Zhang /* Get global columns of mat */ 3500462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm)); 3501feb78a15SHong Zhang 35029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N)); 35034ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 35044ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 35054ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 35064ab4d6f4SRichard Tran Mills 350737a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3508feb78a15SHong Zhang maij = (Mat_MPIAIJ *)(*mat)->data; 3509feb78a15SHong Zhang 3510feb78a15SHong Zhang (*mat)->preallocated = PETSC_TRUE; 3511feb78a15SHong Zhang 35129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3514feb78a15SHong Zhang 3515e489de8fSHong Zhang /* Set A as diagonal portion of *mat */ 3516feb78a15SHong Zhang maij->A = A; 3517feb78a15SHong Zhang 3518a5348796SHong Zhang nz = oi[m]; 3519a5348796SHong Zhang for (i = 0; i < nz; i++) { 3520a5348796SHong Zhang col = oj[i]; 3521a5348796SHong Zhang oj[i] = garray[col]; 3522feb78a15SHong Zhang } 3523feb78a15SHong Zhang 3524e489de8fSHong Zhang /* Set Bnew as off-diagonal portion of *mat */ 35259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &oa)); 35269566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew)); 35279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &oa)); 3528e489de8fSHong Zhang bnew = (Mat_SeqAIJ *)Bnew->data; 3529e489de8fSHong Zhang bnew->maxnz = b->maxnz; /* allocated nonzeros of B */ 3530e489de8fSHong Zhang maij->B = Bnew; 3531d5761cdaSHong Zhang 353208401ef6SPierre Jolivet PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N); 3533d5761cdaSHong Zhang 3534d5761cdaSHong Zhang b->free_a = PETSC_FALSE; 3535d5761cdaSHong Zhang b->free_ij = PETSC_FALSE; 35369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 3537d5761cdaSHong Zhang 3538e489de8fSHong Zhang bnew->free_a = PETSC_TRUE; 3539e489de8fSHong Zhang bnew->free_ij = PETSC_TRUE; 3540feb78a15SHong Zhang 3541a5348796SHong Zhang /* condense columns of maij->B */ 35429566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 35439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 35449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 35459566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 35469566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3548feb78a15SHong Zhang } 3549feb78a15SHong Zhang 3550ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35514aa3045dSJed Brown 3552d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3553d71ae5a4SJacob Faibussowitsch { 355498b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 355585f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 355698b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35571fd43edeSHong Zhang Mat M, Msub, B = a->B; 355898b658c4SHong Zhang MatScalar *aa; 355900e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3560a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 356198b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 356298b658c4SHong Zhang IS iscol_sub, iscmap; 356398b658c4SHong Zhang const PetscInt *is_idx, *cmap; 356418e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3565a31a438cSHong Zhang MPI_Comm comm; 35667e2c5f70SBarry Smith 3567a0ff6018SBarry Smith PetscFunctionBegin; 35689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3569d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35709566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 357128b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35729566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3573d5761cdaSHong Zhang 35749566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 357528b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3576d5761cdaSHong Zhang 35779566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 357828b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3579d5761cdaSHong Zhang 35809566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3581d5761cdaSHong Zhang 3582d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35833b00a383SHong Zhang PetscBool flg; 35843b00a383SHong Zhang 35859566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35869566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3587bcae8d28SHong Zhang 35883b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3589366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35909566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3591366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3592462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3593366a327dSHong Zhang if (allcolumns) { 3594366a327dSHong Zhang iscol_sub = iscol_local; 35959566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35969566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3597366a327dSHong Zhang 35983b00a383SHong Zhang } else { 35991358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3600244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 36019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 36029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 36039566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 36048d2139bdSHong Zhang count = 0; 3605a31a438cSHong Zhang k = 0; 3606a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3607a31a438cSHong Zhang j = is_idx[i]; 3608a31a438cSHong Zhang if (j >= cstart && j < cend) { 3609a31a438cSHong Zhang /* diagonal part of mat */ 36108d2139bdSHong Zhang idx[count] = j; 3611366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36124a3daf6eSHong Zhang } else if (Bn) { 3613a31a438cSHong Zhang /* off-diagonal part of mat */ 3614a31a438cSHong Zhang if (j == garray[k]) { 36158d2139bdSHong Zhang idx[count] = j; 3616a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3617a31a438cSHong Zhang } else if (j > garray[k]) { 3618a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3619a31a438cSHong Zhang if (j == garray[k]) { 3620a31a438cSHong Zhang idx[count] = j; 3621a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36228d2139bdSHong Zhang } 36238d2139bdSHong Zhang } 36248d2139bdSHong Zhang } 36258d2139bdSHong Zhang } 36269566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36278d2139bdSHong Zhang 36289566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36299566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36309566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3631b6d9b4e0SHong Zhang 36329566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3633a31a438cSHong Zhang } 36348b3fa1f7SHong Zhang 36353b00a383SHong Zhang /* (3) Create sequential Msub */ 36369566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3637d5761cdaSHong Zhang } 36388d2139bdSHong Zhang 36399566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 364057508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Msub->data; 364198b658c4SHong Zhang ii = aij->i; 36429566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3643a0ff6018SBarry Smith 3644a0ff6018SBarry Smith /* 3645a0ff6018SBarry Smith m - number of local rows 3646a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3647a0ff6018SBarry Smith rstart - first row in new global matrix generated 3648a0ff6018SBarry Smith */ 36499566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 365098b658c4SHong Zhang 36513b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36523b00a383SHong Zhang /* (4) Create parallel newmat */ 365398b658c4SHong Zhang PetscMPIInt rank, size; 3654bcae8d28SHong Zhang PetscInt csize; 365598b658c4SHong Zhang 36569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 365800e6dbe6SBarry Smith 3659a0ff6018SBarry Smith /* 366000e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 366100e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3662a0ff6018SBarry Smith */ 366300e6dbe6SBarry Smith 366400e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36659566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36666a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36679566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3668a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3669e2c4fddaSBarry Smith nlocal = m; 36706a6a5d1dSBarry Smith } else { 3671a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3672ab50ec6bSBarry Smith } 3673ab50ec6bSBarry Smith } else { 36746a6a5d1dSBarry Smith nlocal = csize; 36756a6a5d1dSBarry Smith } 36769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 367700e6dbe6SBarry Smith rstart = rend - nlocal; 3678aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 367900e6dbe6SBarry Smith 368000e6dbe6SBarry Smith /* next, compute all the lengths */ 368198b658c4SHong Zhang jj = aij->j; 36829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 368300e6dbe6SBarry Smith olens = dlens + m; 368400e6dbe6SBarry Smith for (i = 0; i < m; i++) { 368500e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 368600e6dbe6SBarry Smith olen = 0; 368700e6dbe6SBarry Smith dlen = 0; 368800e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 368915b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 369000e6dbe6SBarry Smith else dlen++; 369100e6dbe6SBarry Smith jj++; 369200e6dbe6SBarry Smith } 369300e6dbe6SBarry Smith olens[i] = olen; 369400e6dbe6SBarry Smith dlens[i] = dlen; 369500e6dbe6SBarry Smith } 3696b6d9b4e0SHong Zhang 36979566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36989566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 369998b658c4SHong Zhang 37009566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 37019566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 37029566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 37039566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 37049566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 37059566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3706d5761cdaSHong Zhang 3707d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3708a0ff6018SBarry Smith M = *newmat; 37099566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 371008401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37119566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3712c48de900SBarry Smith /* 3713c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3714c48de900SBarry Smith rather than the slower MatSetValues(). 3715c48de900SBarry Smith */ 3716c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3717c48de900SBarry Smith M->assembled = PETSC_FALSE; 3718a0ff6018SBarry Smith } 3719548ecf4dSHong Zhang 37203b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37229566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 372398b658c4SHong Zhang 372498b658c4SHong Zhang jj = aij->j; 37259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3726a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3727a0ff6018SBarry Smith row = rstart + i; 372800e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 372915b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37309566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37319371c9d4SSatish Balay jj += nz; 37329371c9d4SSatish Balay aa += nz; 3733a0ff6018SBarry Smith } 37349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37359566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3736a0ff6018SBarry Smith 37379566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37389566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3739fee21e36SBarry Smith 37409566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 374198b658c4SHong Zhang 374298b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3743fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37443b00a383SHong Zhang *newmat = M; 3745f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37469566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 374798b658c4SHong Zhang 3748f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37499566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 375098b658c4SHong Zhang 3751f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3753bcae8d28SHong Zhang 3754bcae8d28SHong Zhang if (iscol_local) { 3755f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37569566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3757bcae8d28SHong Zhang } 375898b658c4SHong Zhang } 37593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3760a0ff6018SBarry Smith } 3761273d9f13SBarry Smith 3762df40acb1SHong Zhang /* 3763df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3764df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3765df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3766df40acb1SHong Zhang 376711a5261eSBarry Smith This requires a sequential iscol with all indices. 3768df40acb1SHong Zhang */ 3769d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3770d71ae5a4SJacob Faibussowitsch { 3771df40acb1SHong Zhang PetscMPIInt rank, size; 3772df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3773df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3774df40acb1SHong Zhang Mat M, Mreuse; 377598b658c4SHong Zhang MatScalar *aa, *vwork; 3776df40acb1SHong Zhang MPI_Comm comm; 3777df40acb1SHong Zhang Mat_SeqAIJ *aij; 37780b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3779df40acb1SHong Zhang 3780df40acb1SHong Zhang PetscFunctionBegin; 37819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3784df40acb1SHong Zhang 37850b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37869566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37879566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37880b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3789462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37900b27a90eSHong Zhang 3791df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37929566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 379328b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37949566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3795df40acb1SHong Zhang } else { 37969566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3797df40acb1SHong Zhang } 3798df40acb1SHong Zhang 3799df40acb1SHong Zhang /* 3800df40acb1SHong Zhang m - number of local rows 3801df40acb1SHong Zhang n - number of columns (same on all processors) 3802df40acb1SHong Zhang rstart - first row in new global matrix generated 3803df40acb1SHong Zhang */ 38049566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 38059566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3806df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 380757508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3808df40acb1SHong Zhang ii = aij->i; 3809df40acb1SHong Zhang jj = aij->j; 3810df40acb1SHong Zhang 3811df40acb1SHong Zhang /* 3812df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3813df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3814df40acb1SHong Zhang */ 3815df40acb1SHong Zhang 3816df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3817df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38189566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3819df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3820df40acb1SHong Zhang nlocal = m; 3821df40acb1SHong Zhang } else { 3822df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3823df40acb1SHong Zhang } 3824df40acb1SHong Zhang } else { 3825df40acb1SHong Zhang nlocal = csize; 3826df40acb1SHong Zhang } 38279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3828df40acb1SHong Zhang rstart = rend - nlocal; 3829aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3830df40acb1SHong Zhang 3831df40acb1SHong Zhang /* next, compute all the lengths */ 38329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3833df40acb1SHong Zhang olens = dlens + m; 3834df40acb1SHong Zhang for (i = 0; i < m; i++) { 3835df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3836df40acb1SHong Zhang olen = 0; 3837df40acb1SHong Zhang dlen = 0; 3838df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3839df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3840df40acb1SHong Zhang else dlen++; 3841df40acb1SHong Zhang jj++; 3842df40acb1SHong Zhang } 3843df40acb1SHong Zhang olens[i] = olen; 3844df40acb1SHong Zhang dlens[i] = dlen; 3845df40acb1SHong Zhang } 38469566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38479566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38489566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38499566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38509566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38519566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3852df40acb1SHong Zhang } else { 3853df40acb1SHong Zhang PetscInt ml, nl; 3854df40acb1SHong Zhang 3855df40acb1SHong Zhang M = *newmat; 38569566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 385708401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38589566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3859df40acb1SHong Zhang /* 3860df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3861df40acb1SHong Zhang rather than the slower MatSetValues(). 3862df40acb1SHong Zhang */ 3863df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3864df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3865df40acb1SHong Zhang } 38669566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 386757508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3868df40acb1SHong Zhang ii = aij->i; 3869df40acb1SHong Zhang jj = aij->j; 38702e5835c6SStefano Zampini 38712e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3873df40acb1SHong Zhang for (i = 0; i < m; i++) { 3874df40acb1SHong Zhang row = rstart + i; 3875df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38769371c9d4SSatish Balay cwork = jj; 38778e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38789371c9d4SSatish Balay vwork = aa; 38798e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38809566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3881df40acb1SHong Zhang } 38829566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3883df40acb1SHong Zhang 38849566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38859566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3886df40acb1SHong Zhang *newmat = M; 3887df40acb1SHong Zhang 3888df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3889df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38909566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38919566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3892df40acb1SHong Zhang } 38933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3894df40acb1SHong Zhang } 3895df40acb1SHong Zhang 3896ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3897d71ae5a4SJacob Faibussowitsch { 38986a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 38999f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3900ccd8e176SBarry Smith const PetscInt *JJ; 3901eeb24464SBarry Smith PetscBool nooffprocentries; 39026a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3903ccd8e176SBarry Smith 3904ccd8e176SBarry Smith PetscFunctionBegin; 39059566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 39069566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3907d0f46423SBarry Smith m = B->rmap->n; 3908d0f46423SBarry Smith cstart = B->cmap->rstart; 3909d0f46423SBarry Smith cend = B->cmap->rend; 3910d0f46423SBarry Smith rstart = B->rmap->rstart; 39119f0612e4SBarry Smith irstart = Ii[0]; 3912899cda47SBarry Smith 39139566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3914ccd8e176SBarry Smith 391576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39168f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3917ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39189f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 391908401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 392008401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 392108401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3922ecc77c7aSBarry Smith } 392376bd3646SJed Brown } 3924ecc77c7aSBarry Smith 39258f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3926b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39279f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3928ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3929ccd8e176SBarry Smith d = 0; 39300daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39310daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3932ccd8e176SBarry Smith } 3933ccd8e176SBarry Smith d_nnz[i] = d; 3934ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3935ccd8e176SBarry Smith } 39369566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39379566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3938ccd8e176SBarry Smith 39398f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3940ccd8e176SBarry Smith ii = i + rstart; 39419f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3942ccd8e176SBarry Smith } 3943eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3944eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39459566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39469566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3947eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3948ccd8e176SBarry Smith 39496a3d2595SBarry Smith /* count number of entries below block diagonal */ 39506a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39516a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39526a3d2595SBarry Smith Aij->ld = ld; 39536a3d2595SBarry Smith for (i = 0; i < m; i++) { 39546a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39556a3d2595SBarry Smith j = 0; 3956ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39576a3d2595SBarry Smith ld[i] = j; 3958720a2405SPierre Jolivet if (J) J += nnz; 39596a3d2595SBarry Smith } 39606a3d2595SBarry Smith 39619566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3963ccd8e176SBarry Smith } 3964ccd8e176SBarry Smith 39651eea217eSSatish Balay /*@ 396611a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3967ccd8e176SBarry Smith (the default parallel PETSc format). 3968ccd8e176SBarry Smith 3969d083f849SBarry Smith Collective 3970ccd8e176SBarry Smith 3971ccd8e176SBarry Smith Input Parameters: 3972a1661176SMatthew Knepley + B - the matrix 3973d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3974d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3975ccd8e176SBarry Smith - v - optional values in the matrix 3976ccd8e176SBarry Smith 3977ccd8e176SBarry Smith Level: developer 3978ccd8e176SBarry Smith 397912251496SSatish Balay Notes: 39802ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39812ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 398211a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 398312251496SSatish Balay 39842ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 398512251496SSatish Balay 3986a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3987a4bd8bc0SBarry Smith 3988a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3989a4bd8bc0SBarry Smith 3990a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3991a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3992a4bd8bc0SBarry Smith 399312251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 399412251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3995c5e4d11fSDmitry Karpeev as shown 399627430b45SBarry Smith .vb 399727430b45SBarry Smith 1 0 0 399827430b45SBarry Smith 2 0 3 P0 399927430b45SBarry Smith ------- 400027430b45SBarry Smith 4 5 6 P1 400127430b45SBarry Smith 400227430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 400327430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 400427430b45SBarry Smith j = {0,0,2} [size = 3] 400527430b45SBarry Smith v = {1,2,3} [size = 3] 400627430b45SBarry Smith 400727430b45SBarry Smith Process1 [P1] rows_owned=[2] 400827430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 400927430b45SBarry Smith j = {0,1,2} [size = 3] 401027430b45SBarry Smith v = {4,5,6} [size = 3] 401127430b45SBarry Smith .ve 401212251496SSatish Balay 4013fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4014a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4015ccd8e176SBarry Smith @*/ 4016d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4017d71ae5a4SJacob Faibussowitsch { 4018ccd8e176SBarry Smith PetscFunctionBegin; 4019cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4021ccd8e176SBarry Smith } 4022ccd8e176SBarry Smith 40235d83a8b1SBarry Smith /*@ 402411a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4025273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4026273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 402720f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4028273d9f13SBarry Smith 4029d083f849SBarry Smith Collective 4030273d9f13SBarry Smith 4031273d9f13SBarry Smith Input Parameters: 40321c4f3114SJed Brown + B - the matrix 4033273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4034273d9f13SBarry Smith (same value is used for all local rows) 4035273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4036273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40372ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4038273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40393287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40403287b5eaSJed Brown the diagonal entry even if it is zero. 4041273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4042273d9f13SBarry Smith submatrix (same value is used for all local rows). 4043273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4044273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40452ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4046273d9f13SBarry Smith structure. The size of this array is equal to the number 4047273d9f13SBarry Smith of local rows, i.e 'm'. 4048273d9f13SBarry Smith 40492920cce0SJacob Faibussowitsch Example Usage: 405027430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 405127430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 405227430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 405327430b45SBarry Smith as follows 405427430b45SBarry Smith 405527430b45SBarry Smith .vb 405627430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 405727430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 405827430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 405927430b45SBarry Smith ------------------------------------- 406027430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 406127430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 406227430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 406327430b45SBarry Smith ------------------------------------- 406427430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 406527430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 406627430b45SBarry Smith .ve 406727430b45SBarry Smith 406827430b45SBarry Smith This can be represented as a collection of submatrices as 406927430b45SBarry Smith .vb 407027430b45SBarry Smith A B C 407127430b45SBarry Smith D E F 407227430b45SBarry Smith G H I 407327430b45SBarry Smith .ve 407427430b45SBarry Smith 407527430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 407627430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 407727430b45SBarry Smith 407827430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407927430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 408027430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 408127430b45SBarry Smith 408227430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 408327430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 408427430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 408527430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 408627430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 40875163b989SNuno Nobre matrix, and [DF] as another `MATSEQAIJ` matrix. 408827430b45SBarry Smith 408920f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 40905163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 40915163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 40925163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 40935163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 409420f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 409527430b45SBarry Smith .vb 409627430b45SBarry Smith proc0 dnz = 2, o_nz = 2 409727430b45SBarry Smith proc1 dnz = 3, o_nz = 2 409827430b45SBarry Smith proc2 dnz = 1, o_nz = 4 409927430b45SBarry Smith .ve 410020f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 410127430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 410227430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 410327430b45SBarry Smith 34 values. 410427430b45SBarry Smith 410520f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 410627430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 410720f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 410827430b45SBarry Smith .vb 410927430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 411027430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 411127430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 411227430b45SBarry Smith .ve 411327430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 411427430b45SBarry Smith hence pre-allocation is perfect. 411527430b45SBarry Smith 411627430b45SBarry Smith Level: intermediate 411727430b45SBarry Smith 411827430b45SBarry Smith Notes: 411949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 412049a6f317SBarry Smith 412127430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41220598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4123651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4124273d9f13SBarry Smith 4125273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4126273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4127273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4128273d9f13SBarry Smith 4129273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4130a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4131a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4132a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4133a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4134a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4135a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4136a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4137a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4138273d9f13SBarry Smith 41392ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4140273d9f13SBarry Smith 414127430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4142aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 414327430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4144aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4145aa95bbe8SBarry Smith 41461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4147a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4148273d9f13SBarry Smith @*/ 4149d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4150d71ae5a4SJacob Faibussowitsch { 4151273d9f13SBarry Smith PetscFunctionBegin; 41526ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41536ba663aaSJed Brown PetscValidType(B, 1); 4154cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4156273d9f13SBarry Smith } 4157273d9f13SBarry Smith 415858d36128SBarry Smith /*@ 415911a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41608f8f2f0dSBarry Smith CSR format for the local rows. 41612fb0ec9aSBarry Smith 4162d083f849SBarry Smith Collective 41632fb0ec9aSBarry Smith 41642fb0ec9aSBarry Smith Input Parameters: 41652fb0ec9aSBarry Smith + comm - MPI communicator 416611a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41672fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4168d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4169d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4170d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4171d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41725693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41735693b835SJunchao Zhang . j - global column indices 4174f1f2ae84SBarry Smith - a - optional matrix values 41752fb0ec9aSBarry Smith 41762fb0ec9aSBarry Smith Output Parameter: 41772fb0ec9aSBarry Smith . mat - the matrix 417803bfb495SBarry Smith 41792fb0ec9aSBarry Smith Level: intermediate 41802fb0ec9aSBarry Smith 41812fb0ec9aSBarry Smith Notes: 41822ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4183d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4184d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41852fb0ec9aSBarry Smith 41862ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 418712251496SSatish Balay 41885693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4189a4bd8bc0SBarry Smith 41905693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4191a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4192a4bd8bc0SBarry Smith 419312251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4194d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4195c5e4d11fSDmitry Karpeev as shown 41962ef1f0ffSBarry Smith .vb 41972ef1f0ffSBarry Smith 1 0 0 41982ef1f0ffSBarry Smith 2 0 3 P0 41992ef1f0ffSBarry Smith ------- 42002ef1f0ffSBarry Smith 4 5 6 P1 42018f8f2f0dSBarry Smith 42022ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 42032ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 42042ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 42052ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 42062fb0ec9aSBarry Smith 42072ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 42082ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42092ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42102ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42112ef1f0ffSBarry Smith .ve 42122ef1f0ffSBarry Smith 4213d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42145693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42152fb0ec9aSBarry Smith @*/ 4216d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4217d71ae5a4SJacob Faibussowitsch { 42182fb0ec9aSBarry Smith PetscFunctionBegin; 421908401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 422008401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42219566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42239566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42249566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42259566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42272fb0ec9aSBarry Smith } 42282fb0ec9aSBarry Smith 42298f8f2f0dSBarry Smith /*@ 423011a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42312ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42322ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42336a3d2595SBarry Smith 42346a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42358f8f2f0dSBarry Smith 42368f8f2f0dSBarry Smith Collective 42378f8f2f0dSBarry Smith 42388f8f2f0dSBarry Smith Input Parameters: 42398f8f2f0dSBarry Smith + mat - the matrix 424011a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42418f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 424211a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42438f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 424411a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 424511a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42468f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42478f8f2f0dSBarry Smith . J - column indices 42488f8f2f0dSBarry Smith - v - matrix values 42498f8f2f0dSBarry Smith 42502ef1f0ffSBarry Smith Level: deprecated 42518f8f2f0dSBarry Smith 42521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4253a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42548f8f2f0dSBarry Smith @*/ 4255d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4256d71ae5a4SJacob Faibussowitsch { 42576a3d2595SBarry Smith PetscInt nnz, i; 42588f8f2f0dSBarry Smith PetscBool nooffprocentries; 42598f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4260fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4261fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42628f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42636a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42646a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42658f8f2f0dSBarry Smith 42668f8f2f0dSBarry Smith PetscFunctionBegin; 4267aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 426808401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 426908401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 427008401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42718f8f2f0dSBarry Smith 42729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42748f8f2f0dSBarry Smith 42758f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42764c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42774c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42784c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42794c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42804c17f1ccSBarry Smith } 42814c17f1ccSBarry Smith } 42828f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42838f8f2f0dSBarry Smith Iii = Ii[i]; 42848f8f2f0dSBarry Smith ldi = ld[i]; 42858f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42869566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42879566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42889566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42898f8f2f0dSBarry Smith ad += md; 42908f8f2f0dSBarry Smith ao += nnz - md; 42918f8f2f0dSBarry Smith } 42928f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42938f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42969566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42979566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42989566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43018f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 43023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43038f8f2f0dSBarry Smith } 43048f8f2f0dSBarry Smith 43056a3d2595SBarry Smith /*@ 430611a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 43076a3d2595SBarry Smith 43086a3d2595SBarry Smith Collective 43096a3d2595SBarry Smith 43106a3d2595SBarry Smith Input Parameters: 43116a3d2595SBarry Smith + mat - the matrix 43126a3d2595SBarry Smith - v - matrix values, stored by row 43136a3d2595SBarry Smith 43146a3d2595SBarry Smith Level: intermediate 43156a3d2595SBarry Smith 4316a4bd8bc0SBarry Smith Notes: 43176a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43186a3d2595SBarry Smith 4319a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4320a4bd8bc0SBarry Smith 43211cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4322a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43236a3d2595SBarry Smith @*/ 4324d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4325d71ae5a4SJacob Faibussowitsch { 43266a3d2595SBarry Smith PetscInt nnz, i, m; 43276a3d2595SBarry Smith PetscBool nooffprocentries; 43286a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43296a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43306a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43316a3d2595SBarry Smith PetscScalar *ad, *ao; 43326a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43336a3d2595SBarry Smith PetscInt ldi, Iii, md; 43346a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43356a3d2595SBarry Smith 43366a3d2595SBarry Smith PetscFunctionBegin; 43376a3d2595SBarry Smith m = mat->rmap->n; 43386a3d2595SBarry Smith 43396a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43406a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43416a3d2595SBarry Smith Iii = 0; 43426a3d2595SBarry Smith for (i = 0; i < m; i++) { 43436a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43446a3d2595SBarry Smith ldi = ld[i]; 43456a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43466a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43476a3d2595SBarry Smith ad += md; 4348810441c8SPierre Jolivet if (ao) { 4349810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4350810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43516a3d2595SBarry Smith ao += nnz - md; 4352810441c8SPierre Jolivet } 43536a3d2595SBarry Smith Iii += nnz; 43546a3d2595SBarry Smith } 43556a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43566a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43576a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43586a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43596a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43606a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43616a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43626a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43636a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43646a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43666a3d2595SBarry Smith } 43676a3d2595SBarry Smith 43685d83a8b1SBarry Smith /*@ 436911a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4370273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4371273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43722ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4373273d9f13SBarry Smith 4374d083f849SBarry Smith Collective 4375273d9f13SBarry Smith 4376273d9f13SBarry Smith Input Parameters: 4377273d9f13SBarry Smith + comm - MPI communicator 437811a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4379273d9f13SBarry Smith This value should be the same as the local size used in creating the 4380273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4381273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 438245f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4383273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 438411a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 438511a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4386273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4387273d9f13SBarry Smith (same value is used for all local rows) 4388273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4389273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43902ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4391273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4392273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4393273d9f13SBarry Smith submatrix (same value is used for all local rows). 4394273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4395273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43962ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4397273d9f13SBarry Smith structure. The size of this array is equal to the number 4398273d9f13SBarry Smith of local rows, i.e 'm'. 4399273d9f13SBarry Smith 4400273d9f13SBarry Smith Output Parameter: 4401273d9f13SBarry Smith . A - the matrix 4402273d9f13SBarry Smith 440327430b45SBarry Smith Options Database Keys: 440427430b45SBarry Smith + -mat_no_inode - Do not use inodes 440527430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 440627430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4407727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4408727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 440927430b45SBarry Smith 44102ef1f0ffSBarry Smith Level: intermediate 44112ef1f0ffSBarry Smith 441227430b45SBarry Smith Notes: 441377433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4414f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 441511a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4416175b88e8SBarry Smith 441749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 441849a6f317SBarry Smith 44192ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44202ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4421273d9f13SBarry Smith storage requirements for this matrix. 4422273d9f13SBarry Smith 442311a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4424273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4425273d9f13SBarry Smith that argument. 4426273d9f13SBarry Smith 4427727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4428727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4429727bdf9bSBarry Smith 4430273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4431273d9f13SBarry Smith (possibly both). 4432273d9f13SBarry Smith 443333a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4434727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4435727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4436727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 443733a7c187SSatish Balay values corresponding to [m x N] submatrix. 4438273d9f13SBarry Smith 443933a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 444033a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4441df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 444233a7c187SSatish Balay 444333a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 444433a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 444533a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 444633a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 444733a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 444833a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 44490b4b7b1cSBarry Smith illustrates this concept. The two matrices, the DIAGONAL portion and 44500b4b7b1cSBarry Smith the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices. 445133a7c187SSatish Balay 445233a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 445333a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 445433a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 445533a7c187SSatish Balay local matrix (a rectangular submatrix). 4456273d9f13SBarry Smith 44572ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4458273d9f13SBarry Smith 445997d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44602ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4461da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4462da57b5cdSKarl Rupp .vb 44632ef1f0ffSBarry Smith MatCreate(..., &A); 44642ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44652ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44662ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4467da57b5cdSKarl Rupp .ve 446897d05335SKris Buschelman 4469273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4470273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4471273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4472273d9f13SBarry Smith 44732920cce0SJacob Faibussowitsch Example Usage: 4474273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4475273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4476273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4477efc377ccSKarl Rupp as follows 4478273d9f13SBarry Smith 4479273d9f13SBarry Smith .vb 4480273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4481273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4482273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4483273d9f13SBarry Smith ------------------------------------- 4484273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4485273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4486273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4487273d9f13SBarry Smith ------------------------------------- 4488273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4489273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4490273d9f13SBarry Smith .ve 4491273d9f13SBarry Smith 4492da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4493273d9f13SBarry Smith 4494273d9f13SBarry Smith .vb 4495273d9f13SBarry Smith A B C 4496273d9f13SBarry Smith D E F 4497273d9f13SBarry Smith G H I 4498273d9f13SBarry Smith .ve 4499273d9f13SBarry Smith 4500273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4501273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4502273d9f13SBarry Smith 4503273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4504273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4505273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4506273d9f13SBarry Smith 4507273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4508273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4509273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4510273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 451127430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 45125163b989SNuno Nobre matrix, and [DF] as another SeqAIJ matrix. 4513273d9f13SBarry Smith 45142ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45155163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 45165163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 45175163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 45185163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45192ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4520273d9f13SBarry Smith .vb 452127430b45SBarry Smith proc0 dnz = 2, o_nz = 2 452227430b45SBarry Smith proc1 dnz = 3, o_nz = 2 452327430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4524273d9f13SBarry Smith .ve 45252ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4526273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4527273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4528273d9f13SBarry Smith 34 values. 4529273d9f13SBarry Smith 45302ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4531a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4532da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4533273d9f13SBarry Smith .vb 453427430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 453527430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 453627430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4537273d9f13SBarry Smith .ve 4538273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4539273d9f13SBarry Smith hence pre-allocation is perfect. 4540273d9f13SBarry Smith 45411cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4542727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4543727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4544273d9f13SBarry Smith @*/ 4545d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4546d71ae5a4SJacob Faibussowitsch { 4547b1d57f15SBarry Smith PetscMPIInt size; 4548273d9f13SBarry Smith 4549273d9f13SBarry Smith PetscFunctionBegin; 45509566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45519566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4553273d9f13SBarry Smith if (size > 1) { 45549566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45559566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4556273d9f13SBarry Smith } else { 45579566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4559273d9f13SBarry Smith } 45603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4561273d9f13SBarry Smith } 4562195d93cdSBarry Smith 45630b98dbb4SBarry Smith /*MC 45640b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45650b98dbb4SBarry Smith 45660b98dbb4SBarry Smith Synopsis: 45670b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45680b98dbb4SBarry Smith 45690b98dbb4SBarry Smith Not Collective 45700b98dbb4SBarry Smith 45710b98dbb4SBarry Smith Input Parameter: 45720b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 45730b98dbb4SBarry Smith 45740b98dbb4SBarry Smith Output Parameters: 45750b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 45764cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45772ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45780b98dbb4SBarry Smith - ierr - error code 45790b98dbb4SBarry Smith 45800b98dbb4SBarry Smith Level: advanced 45810b98dbb4SBarry Smith 45820b98dbb4SBarry Smith Note: 45830b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45840b98dbb4SBarry Smith 45851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 45860b98dbb4SBarry Smith M*/ 45870b98dbb4SBarry Smith 45880b98dbb4SBarry Smith /*MC 45890b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45900b98dbb4SBarry Smith 45910b98dbb4SBarry Smith Synopsis: 45920b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45930b98dbb4SBarry Smith 45940b98dbb4SBarry Smith Not Collective 45950b98dbb4SBarry Smith 45960b98dbb4SBarry Smith Input Parameters: 45970b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 45980b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 45994cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 46002ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 46010b98dbb4SBarry Smith - ierr - error code 46020b98dbb4SBarry Smith 46030b98dbb4SBarry Smith Level: advanced 46040b98dbb4SBarry Smith 46051cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 46060b98dbb4SBarry Smith M*/ 46070b98dbb4SBarry Smith 4608127ca0efSMatthew Knepley /*@C 46090ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4610127ca0efSMatthew Knepley 46112ef1f0ffSBarry Smith Not Collective 4612127ca0efSMatthew Knepley 4613127ca0efSMatthew Knepley Input Parameter: 461411a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4615127ca0efSMatthew Knepley 4616127ca0efSMatthew Knepley Output Parameters: 461711a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 461811a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46192ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4620127ca0efSMatthew Knepley 46210ab4885dSBarry Smith Level: intermediate 46220ab4885dSBarry Smith 462311a5261eSBarry Smith Note: 46242ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46252ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46262ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4627127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4628127ca0efSMatthew Knepley 4629fe59aa6dSJacob Faibussowitsch Fortran Notes: 46300ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4631127ca0efSMatthew Knepley 4632fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4633127ca0efSMatthew Knepley @*/ 4634d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4635d71ae5a4SJacob Faibussowitsch { 4636195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 463704cf37c7SBarry Smith PetscBool flg; 4638b1d57f15SBarry Smith 4639195d93cdSBarry Smith PetscFunctionBegin; 46409566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 464128b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 464221e72a00SBarry Smith if (Ad) *Ad = a->A; 464321e72a00SBarry Smith if (Ao) *Ao = a->B; 464421e72a00SBarry Smith if (colmap) *colmap = a->garray; 46453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4646195d93cdSBarry Smith } 4647a2243be0SBarry Smith 4648d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4649d71ae5a4SJacob Faibussowitsch { 4650110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46519b8102ccSHong Zhang PetscInt *indx; 4652110bb6e1SHong Zhang PetscScalar *values; 4653421ddf4dSJunchao Zhang MatType rootType; 46549b8102ccSHong Zhang 46559b8102ccSHong Zhang PetscFunctionBegin; 46569566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4657110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4658110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4659110bb6e1SHong Zhang 466048a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4661a22543b6SHong Zhang /* Check sum(n) = N */ 4662462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 466308401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4664a22543b6SHong Zhang 46659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46669b8102ccSHong Zhang rstart -= m; 46679b8102ccSHong Zhang 4668d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46699b8102ccSHong Zhang for (i = 0; i < m; i++) { 46709566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46719566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46729566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46739b8102ccSHong Zhang } 46749b8102ccSHong Zhang 46759566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46769566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46779566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46789566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46799566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46809566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46819566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46829566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4683d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46849566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46859b8102ccSHong Zhang } 46869b8102ccSHong Zhang 4687110bb6e1SHong Zhang /* numeric phase */ 46889566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46899b8102ccSHong Zhang for (i = 0; i < m; i++) { 46909566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46919b8102ccSHong Zhang Ii = i + rstart; 46929566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46939566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46949b8102ccSHong Zhang } 46959566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46969566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4698c5d6d63eSBarry Smith } 4699c5d6d63eSBarry Smith 4700d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data) 4701d71ae5a4SJacob Faibussowitsch { 47026718818eSStefano Zampini Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data; 470351a7d1a8SHong Zhang 470451a7d1a8SHong Zhang PetscFunctionBegin; 47053ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 47069566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 47079566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 47089566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 47099566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 47109566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 47119566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 47129566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 47139566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47149566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47159566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47169566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47179566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47189566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47199566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 472151a7d1a8SHong Zhang } 472251a7d1a8SHong Zhang 4723c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4724c6db04a5SJed Brown #include <petscbt.h> 47254ebed01fSBarry Smith 4726d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4727d71ae5a4SJacob Faibussowitsch { 4728ce94432eSBarry Smith MPI_Comm comm; 472955d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4730b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 47316497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 47326497c311SBarry Smith PetscMPIInt proc, k; 4733b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 47346497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4735b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 473655d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 473755d1abb9SHong Zhang MPI_Status *status; 4738fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4739dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 474055d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4741776b82aeSLisandro Dalcin PetscContainer container; 474255d1abb9SHong Zhang 474355d1abb9SHong Zhang PetscFunctionBegin; 47449566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47459566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47463c2c1871SHong Zhang 47479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 474955d1abb9SHong Zhang 47509566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 475128b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47529566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4754fff043a9SJunchao Zhang aa = a_a; 4755bf0cc555SLisandro Dalcin 475655d1abb9SHong Zhang bi = merge->bi; 475755d1abb9SHong Zhang bj = merge->bj; 475855d1abb9SHong Zhang buf_ri = merge->buf_ri; 475955d1abb9SHong Zhang buf_rj = merge->buf_rj; 476055d1abb9SHong Zhang 47619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47627a2fc3feSBarry Smith owners = merge->rowmap->range; 476355d1abb9SHong Zhang len_s = merge->len_s; 476455d1abb9SHong Zhang 476555d1abb9SHong Zhang /* send and recv matrix values */ 47669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47679566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 476855d1abb9SHong Zhang 47699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 477055d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 477155d1abb9SHong Zhang if (!len_s[proc]) continue; 477255d1abb9SHong Zhang i = owners[proc]; 47736497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 477455d1abb9SHong Zhang k++; 477555d1abb9SHong Zhang } 477655d1abb9SHong Zhang 47779566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47789566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47799566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 478055d1abb9SHong Zhang 47819566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47829566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 478355d1abb9SHong Zhang 478455d1abb9SHong Zhang /* insert mat values of mpimat */ 47859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47869566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 478755d1abb9SHong Zhang 478855d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 478955d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4790f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 479155d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4792a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 479355d1abb9SHong Zhang } 479455d1abb9SHong Zhang 479555d1abb9SHong Zhang /* set values of ba */ 47967a2fc3feSBarry Smith m = merge->rowmap->n; 479755d1abb9SHong Zhang for (i = 0; i < m; i++) { 479855d1abb9SHong Zhang arow = owners[rank] + i; 479955d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 480055d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 48019566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 480255d1abb9SHong Zhang 480355d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 480455d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 480555d1abb9SHong Zhang aj = a->j + ai[arow]; 4806fff043a9SJunchao Zhang aa = a_a + ai[arow]; 480755d1abb9SHong Zhang nextaj = 0; 480855d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 480955d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 481055d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 481155d1abb9SHong Zhang } 481255d1abb9SHong Zhang } 481355d1abb9SHong Zhang 481455d1abb9SHong Zhang /* add received vals into ba */ 481555d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 481655d1abb9SHong Zhang /* i-th row */ 481755d1abb9SHong Zhang if (i == *nextrow[k]) { 481855d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4819f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4820f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 482155d1abb9SHong Zhang nextaj = 0; 482255d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 482355d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 482455d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 482555d1abb9SHong Zhang } 482655d1abb9SHong Zhang } 48279371c9d4SSatish Balay nextrow[k]++; 48289371c9d4SSatish Balay nextai[k]++; 482955d1abb9SHong Zhang } 483055d1abb9SHong Zhang } 48319566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 483255d1abb9SHong Zhang } 48339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 483655d1abb9SHong Zhang 48379566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48389566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48399566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48409566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48419566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 484355d1abb9SHong Zhang } 484438f152feSBarry Smith 4845d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4846d71ae5a4SJacob Faibussowitsch { 484755a3bba9SHong Zhang Mat B_mpi; 4848c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4849b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4850b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4851d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 48526497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4853c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4854b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 485555d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 485658cb9c82SHong Zhang MPI_Status *status; 48570298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4858be0fcf8dSHong Zhang PetscBT lnkbt; 485951a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4860776b82aeSLisandro Dalcin PetscContainer container; 486102c68681SHong Zhang 4862e5f2cdd8SHong Zhang PetscFunctionBegin; 48639566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48643c2c1871SHong Zhang 486538f152feSBarry Smith /* make sure it is a PETSc comm */ 48669566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 486955d1abb9SHong Zhang 48709566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4872e5f2cdd8SHong Zhang 48736abd8857SHong Zhang /* determine row ownership */ 48749566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48759566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48789566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 488155d1abb9SHong Zhang 48827a2fc3feSBarry Smith m = merge->rowmap->n; 48837a2fc3feSBarry Smith owners = merge->rowmap->range; 48846abd8857SHong Zhang 48856abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48863e06a4e6SHong Zhang len_s = merge->len_s; 488751a7d1a8SHong Zhang 48882257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4889c2234fe3SHong Zhang merge->nsend = 0; 48906497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 48912257cef7SHong Zhang len_si[proc] = 0; 48923e06a4e6SHong Zhang if (proc == rank) { 48936abd8857SHong Zhang len_s[proc] = 0; 48943e06a4e6SHong Zhang } else { 48956497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 48966497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 48973e06a4e6SHong Zhang } 48983e06a4e6SHong Zhang if (len_s[proc]) { 4899c2234fe3SHong Zhang merge->nsend++; 49002257cef7SHong Zhang nrows = 0; 49012257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49022257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 49032257cef7SHong Zhang } 49046497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 49052257cef7SHong Zhang len += len_si[proc]; 4906409913e3SHong Zhang } 490758cb9c82SHong Zhang } 4908409913e3SHong Zhang 49092257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 49109566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 49119566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4912671beff6SHong Zhang 49133e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49149566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49159566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 491602c68681SHong Zhang 49173e06a4e6SHong Zhang /* post the Isend of j-structure */ 49189566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49193e06a4e6SHong Zhang 49206497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4921409913e3SHong Zhang if (!len_s[proc]) continue; 492202c68681SHong Zhang i = owners[proc]; 49236497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 492451a7d1a8SHong Zhang k++; 492551a7d1a8SHong Zhang } 492651a7d1a8SHong Zhang 49273e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49289566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49299566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 493002c68681SHong Zhang 493102c68681SHong Zhang /* send and recv i-structure */ 49329566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49339566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 493402c68681SHong Zhang 49359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49363e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49376497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 493802c68681SHong Zhang if (!len_s[proc]) continue; 49393e06a4e6SHong Zhang /* form outgoing message for i-structure: 49403e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49413e06a4e6SHong Zhang [1:nrows]: row index (global) 49423e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49433e06a4e6SHong Zhang */ 49442257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49453e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49463e06a4e6SHong Zhang buf_si[0] = nrows; 49473e06a4e6SHong Zhang buf_si_i[0] = 0; 49483e06a4e6SHong Zhang nrows = 0; 49493e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49503e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49513e06a4e6SHong Zhang if (anzi) { 49523e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49533e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49543e06a4e6SHong Zhang nrows++; 49553e06a4e6SHong Zhang } 49563e06a4e6SHong Zhang } 49576497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 495802c68681SHong Zhang k++; 49592257cef7SHong Zhang buf_si += len_si[proc]; 496002c68681SHong Zhang } 49612257cef7SHong Zhang 49629566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49639566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 496402c68681SHong Zhang 49659566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 496648a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49673e06a4e6SHong Zhang 49689566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49699566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49709566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49719566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49729566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49739566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49749566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 497558cb9c82SHong Zhang 4976bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 497758cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 497958cb9c82SHong Zhang bi[0] = 0; 498058cb9c82SHong Zhang 4981be0fcf8dSHong Zhang /* create and initialize a linked list */ 4982be0fcf8dSHong Zhang nlnk = N + 1; 49839566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 498458cb9c82SHong Zhang 4985bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4986bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49879566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49882205254eSKarl Rupp 498958cb9c82SHong Zhang current_space = free_space; 499058cb9c82SHong Zhang 4991bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49929566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49931d79065fSBarry Smith 49943e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49952257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49963e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49973e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4998a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49993e06a4e6SHong Zhang } 50002257cef7SHong Zhang 5001d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 5002bcc1bcd5SHong Zhang len = 0; 500358cb9c82SHong Zhang for (i = 0; i < m; i++) { 500458cb9c82SHong Zhang bnzi = 0; 500558cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 500658cb9c82SHong Zhang arow = owners[rank] + i; 500758cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 500858cb9c82SHong Zhang aj = a->j + ai[arow]; 50099566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 501058cb9c82SHong Zhang bnzi += nlnk; 501158cb9c82SHong Zhang /* add received col data into lnk */ 501251a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 501355d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50143e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50153e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50169566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50173e06a4e6SHong Zhang bnzi += nlnk; 50189371c9d4SSatish Balay nextrow[k]++; 50199371c9d4SSatish Balay nextai[k]++; 50203e06a4e6SHong Zhang } 502158cb9c82SHong Zhang } 5022bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 502358cb9c82SHong Zhang 502458cb9c82SHong Zhang /* if free space is not available, make more free space */ 502548a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 502658cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50279566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50289566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5029bcc1bcd5SHong Zhang 503058cb9c82SHong Zhang current_space->array += bnzi; 503158cb9c82SHong Zhang current_space->local_used += bnzi; 503258cb9c82SHong Zhang current_space->local_remaining -= bnzi; 503358cb9c82SHong Zhang 503458cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 503558cb9c82SHong Zhang } 5036bcc1bcd5SHong Zhang 50379566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5038bcc1bcd5SHong Zhang 50399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50409566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50419566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5042409913e3SHong Zhang 5043bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50449566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50459566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 504654b84b50SHong Zhang if (n == PETSC_DECIDE) { 50479566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 504854b84b50SHong Zhang } else { 50499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 505054b84b50SHong Zhang } 50519566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50529566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50539566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5054d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50559566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 505658cb9c82SHong Zhang 505790431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50586abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5059affca5deSHong Zhang merge->bi = bi; 5060affca5deSHong Zhang merge->bj = bj; 506102c68681SHong Zhang merge->buf_ri = buf_ri; 506202c68681SHong Zhang merge->buf_rj = buf_rj; 50630298fd71SBarry Smith merge->coi = NULL; 50640298fd71SBarry Smith merge->coj = NULL; 50650298fd71SBarry Smith merge->owners_co = NULL; 5066affca5deSHong Zhang 50679566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5068bf0cc555SLisandro Dalcin 5069affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50709566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50719566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 50729566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50739566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50749566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5075affca5deSHong Zhang *mpimat = B_mpi; 507638f152feSBarry Smith 50779566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5079e5f2cdd8SHong Zhang } 508025616d81SHong Zhang 5081cc4c1da9SBarry Smith /*@ 508211a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5083d4036a1aSHong Zhang matrices from each processor 5084d4036a1aSHong Zhang 5085d083f849SBarry Smith Collective 5086d4036a1aSHong Zhang 5087d4036a1aSHong Zhang Input Parameters: 5088d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5089d4036a1aSHong Zhang . seqmat - the input sequential matrices 509011a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 509111a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 509211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5093d4036a1aSHong Zhang 5094d4036a1aSHong Zhang Output Parameter: 5095d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5096d4036a1aSHong Zhang 5097d4036a1aSHong Zhang Level: advanced 5098d4036a1aSHong Zhang 509911a5261eSBarry Smith Note: 5100d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5101d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5102b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 51032ef1f0ffSBarry Smith 51041cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5105d4036a1aSHong Zhang @*/ 5106d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5107d71ae5a4SJacob Faibussowitsch { 51087e63b356SHong Zhang PetscMPIInt size; 510955d1abb9SHong Zhang 511055d1abb9SHong Zhang PetscFunctionBegin; 51119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 51127e63b356SHong Zhang if (size == 1) { 51139566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51147e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51159566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51167e63b356SHong Zhang } else { 51179566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51187e63b356SHong Zhang } 51199566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51217e63b356SHong Zhang } 51229566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 512348a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51249566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51259566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 512755d1abb9SHong Zhang } 51284ebed01fSBarry Smith 5129bc08b0f1SBarry Smith /*@ 51302920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51318a9c020eSBarry Smith 51328a9c020eSBarry Smith Not Collective 51338a9c020eSBarry Smith 51342fe279fdSBarry Smith Input Parameter: 513520f4b53cSBarry Smith . A - the matrix 51368a9c020eSBarry Smith 51378a9c020eSBarry Smith Output Parameter: 51388a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51398a9c020eSBarry Smith 51408a9c020eSBarry Smith Level: developer 51418a9c020eSBarry Smith 51428a9c020eSBarry Smith Notes: 51432920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51442920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51452920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51462920cce0SJacob Faibussowitsch 514711a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51488a9c020eSBarry Smith 51492920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51502920cce0SJacob Faibussowitsch 515111a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51528a9c020eSBarry Smith 51531cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51548a9c020eSBarry Smith @*/ 5155d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5156d71ae5a4SJacob Faibussowitsch { 51578a9c020eSBarry Smith PetscBool mpi; 51588a9c020eSBarry Smith 51598a9c020eSBarry Smith PetscFunctionBegin; 51608a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51618a9c020eSBarry Smith if (mpi) { 51628a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51638a9c020eSBarry Smith } else { 51648a9c020eSBarry Smith *A_loc = A; 51658a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51668a9c020eSBarry Smith } 51673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51688a9c020eSBarry Smith } 51698a9c020eSBarry Smith 51708a9c020eSBarry Smith /*@ 51712920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 517225616d81SHong Zhang 517332fba14fSHong Zhang Not Collective 517425616d81SHong Zhang 517525616d81SHong Zhang Input Parameters: 517625616d81SHong Zhang + A - the matrix 517711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 517825616d81SHong Zhang 517925616d81SHong Zhang Output Parameter: 518025616d81SHong Zhang . A_loc - the local sequential matrix generated 518125616d81SHong Zhang 518225616d81SHong Zhang Level: developer 518325616d81SHong Zhang 518477c65a98SStefano Zampini Notes: 51852920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51862920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51872920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51882920cce0SJacob Faibussowitsch 518911a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51908a9c020eSBarry Smith 51912920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51922920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51932920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51942920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 519577c65a98SStefano Zampini 51961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 519725616d81SHong Zhang @*/ 5198d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5199d71ae5a4SJacob Faibussowitsch { 520001b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5201b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5202b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5203ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5204ce496241SStefano Zampini PetscScalar *ca, *cam; 520577c65a98SStefano Zampini PetscMPIInt size; 5206d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 52075a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 52088661ff28SBarry Smith PetscBool match; 520925616d81SHong Zhang 521025616d81SHong Zhang PetscFunctionBegin; 52119566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 521228b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 52139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 521477c65a98SStefano Zampini if (size == 1) { 521577c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52169566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 521777c65a98SStefano Zampini *A_loc = mpimat->A; 521877c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52199566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 522077c65a98SStefano Zampini } 52213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 522277c65a98SStefano Zampini } 522370a9ba44SHong Zhang 52249566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5225f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5226f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 52279371c9d4SSatish Balay ai = a->i; 52289371c9d4SSatish Balay aj = a->j; 52299371c9d4SSatish Balay bi = b->i; 52309371c9d4SSatish Balay bj = b->j; 52319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5233ce496241SStefano Zampini aa = aav; 5234ce496241SStefano Zampini ba = bav; 523501b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5237dea91ad1SHong Zhang ci[0] = 0; 5238ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5241dea91ad1SHong Zhang k = 0; 524201b7ae99SHong Zhang for (i = 0; i < am; i++) { 52435a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52445a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 524501b7ae99SHong Zhang /* off-diagonal portion of A */ 52465a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52475a7d977cSHong Zhang col = cmap[*bj]; 52485a7d977cSHong Zhang if (col >= cstart) break; 52499371c9d4SSatish Balay cj[k] = col; 52509371c9d4SSatish Balay bj++; 52515a7d977cSHong Zhang ca[k++] = *ba++; 52525a7d977cSHong Zhang } 52535a7d977cSHong Zhang /* diagonal portion of A */ 52545a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52555a7d977cSHong Zhang cj[k] = cstart + *aj++; 52565a7d977cSHong Zhang ca[k++] = *aa++; 52575a7d977cSHong Zhang } 52585a7d977cSHong Zhang /* off-diagonal portion of A */ 52595a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52605a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52615a7d977cSHong Zhang ca[k++] = *ba++; 52625a7d977cSHong Zhang } 526325616d81SHong Zhang } 5264dea91ad1SHong Zhang /* put together the new matrix */ 52659566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5266dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5267dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5268dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5269e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5270e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5271dea91ad1SHong Zhang mat->nonew = 0; 52725a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52735a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5274fff043a9SJunchao Zhang ci = mat->i; 5275fff043a9SJunchao Zhang cj = mat->j; 52769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52775a7d977cSHong Zhang for (i = 0; i < am; i++) { 52785a7d977cSHong Zhang /* off-diagonal portion of A */ 52795a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52805a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52815a7d977cSHong Zhang col = cmap[*bj]; 52825a7d977cSHong Zhang if (col >= cstart) break; 52839371c9d4SSatish Balay *cam++ = *ba++; 52849371c9d4SSatish Balay bj++; 52855a7d977cSHong Zhang } 52865a7d977cSHong Zhang /* diagonal portion of A */ 5287ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5288a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52895a7d977cSHong Zhang /* off-diagonal portion of A */ 5290f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52919371c9d4SSatish Balay *cam++ = *ba++; 52929371c9d4SSatish Balay bj++; 5293f33d1a9aSHong Zhang } 52945a7d977cSHong Zhang } 52959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 529698921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52999566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 53003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 530125616d81SHong Zhang } 530225616d81SHong Zhang 5303ed502f03SStefano Zampini /*@ 530411a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 53054cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5306ed502f03SStefano Zampini 5307ed502f03SStefano Zampini Not Collective 5308ed502f03SStefano Zampini 5309ed502f03SStefano Zampini Input Parameters: 5310ed502f03SStefano Zampini + A - the matrix 531111a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5312ed502f03SStefano Zampini 5313d8d19677SJose E. Roman Output Parameters: 53142ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5315ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5316ed502f03SStefano Zampini 5317ed502f03SStefano Zampini Level: developer 5318ed502f03SStefano Zampini 531911a5261eSBarry Smith Note: 53202ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53214cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5322ed502f03SStefano Zampini 53231cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5324ed502f03SStefano Zampini @*/ 5325d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5326d71ae5a4SJacob Faibussowitsch { 5327ed502f03SStefano Zampini Mat Ao, Ad; 5328ed502f03SStefano Zampini const PetscInt *cmap; 5329ed502f03SStefano Zampini PetscMPIInt size; 5330ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5331ed502f03SStefano Zampini 5332ed502f03SStefano Zampini PetscFunctionBegin; 53339566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53349566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5335ed502f03SStefano Zampini if (size == 1) { 5336ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53379566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5338ed502f03SStefano Zampini *A_loc = Ad; 5339ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53409566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5341ed502f03SStefano Zampini } 53429566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5344ed502f03SStefano Zampini } 53459566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53469566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5347ed502f03SStefano Zampini if (f) { 53489566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5349ed502f03SStefano Zampini } else { 5350ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5351ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5352ed502f03SStefano Zampini Mat_SeqAIJ *c; 5353ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5354ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5355ed502f03SStefano Zampini PetscInt *ci, *cj; 5356ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5357ed502f03SStefano Zampini PetscScalar *ca; 5358ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5359ed502f03SStefano Zampini 53609566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53619566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53639566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5364ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5365ed502f03SStefano Zampini PetscInt k; 53669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5369ed502f03SStefano Zampini ci[0] = 0; 5370ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5371ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5372ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5373ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5374ed502f03SStefano Zampini /* diagonal portion of A */ 5375ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5376ed502f03SStefano Zampini cj[k] = *aj++; 5377ed502f03SStefano Zampini ca[k] = *aa++; 5378ed502f03SStefano Zampini } 5379ed502f03SStefano Zampini /* off-diagonal portion of A */ 5380ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5381ed502f03SStefano Zampini cj[k] = dn + *bj++; 5382ed502f03SStefano Zampini ca[k] = *ba++; 5383ed502f03SStefano Zampini } 5384ed502f03SStefano Zampini } 5385ed502f03SStefano Zampini /* put together the new matrix */ 53869566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5387ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5388ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5389ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5390ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5391ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5392ed502f03SStefano Zampini c->nonew = 0; 53939566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5394ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5396ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5397ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5398ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5399ed502f03SStefano Zampini /* diagonal portion of A */ 5400ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5401ed502f03SStefano Zampini /* off-diagonal portion of A */ 5402ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5403ed502f03SStefano Zampini } 54049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 540598921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 54069566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 54079566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5408ed502f03SStefano Zampini if (glob) { 5409ed502f03SStefano Zampini PetscInt cst, *gidx; 5410ed502f03SStefano Zampini 54119566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 54129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5413ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5414ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54159566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5416ed502f03SStefano Zampini } 5417ed502f03SStefano Zampini } 54189566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5420ed502f03SStefano Zampini } 5421ed502f03SStefano Zampini 542232fba14fSHong Zhang /*@C 542311a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 542432fba14fSHong Zhang 542532fba14fSHong Zhang Not Collective 542632fba14fSHong Zhang 542732fba14fSHong Zhang Input Parameters: 542832fba14fSHong Zhang + A - the matrix 542911a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 543020f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 543120f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 543232fba14fSHong Zhang 543332fba14fSHong Zhang Output Parameter: 543432fba14fSHong Zhang . A_loc - the local sequential matrix generated 543532fba14fSHong Zhang 543632fba14fSHong Zhang Level: developer 543732fba14fSHong Zhang 54381cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 543932fba14fSHong Zhang @*/ 5440d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5441d71ae5a4SJacob Faibussowitsch { 544232fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 544332fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 544432fba14fSHong Zhang IS isrowa, iscola; 544532fba14fSHong Zhang Mat *aloc; 54464a2b5492SBarry Smith PetscBool match; 544732fba14fSHong Zhang 544832fba14fSHong Zhang PetscFunctionBegin; 54499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 545028b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54519566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 545232fba14fSHong Zhang if (!row) { 54539371c9d4SSatish Balay start = A->rmap->rstart; 54549371c9d4SSatish Balay end = A->rmap->rend; 54559566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 545632fba14fSHong Zhang } else { 545732fba14fSHong Zhang isrowa = *row; 545832fba14fSHong Zhang } 545932fba14fSHong Zhang if (!col) { 5460d0f46423SBarry Smith start = A->cmap->rstart; 546132fba14fSHong Zhang cmap = a->garray; 5462d0f46423SBarry Smith nzA = a->A->cmap->n; 5463d0f46423SBarry Smith nzB = a->B->cmap->n; 54649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 546532fba14fSHong Zhang ncols = 0; 546632fba14fSHong Zhang for (i = 0; i < nzB; i++) { 546732fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 546832fba14fSHong Zhang else break; 546932fba14fSHong Zhang } 547032fba14fSHong Zhang imark = i; 547132fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 547232fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54739566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 547432fba14fSHong Zhang } else { 547532fba14fSHong Zhang iscola = *col; 547632fba14fSHong Zhang } 547732fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 547932fba14fSHong Zhang aloc[0] = *A_loc; 548032fba14fSHong Zhang } 54819566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5482109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54839566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5484109e0772SStefano Zampini } 548532fba14fSHong Zhang *A_loc = aloc[0]; 54869566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 548748a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 548848a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54899566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 549132fba14fSHong Zhang } 549232fba14fSHong Zhang 54935c65b9ecSFande Kong /* 54945c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54955c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54965c65b9ecSFande Kong * on a global size. 54975c65b9ecSFande Kong * */ 5498ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5499d71ae5a4SJacob Faibussowitsch { 55005c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5501f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5502131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5503131c27b5Sprj- PetscMPIInt owner; 55045c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 55055c65b9ecSFande Kong const PetscInt *lrowindices; 55065c65b9ecSFande Kong PetscSF sf, osf; 55075c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 55085c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 55095c65b9ecSFande Kong MPI_Comm comm; 55105c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5511fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 55125c65b9ecSFande Kong 55135c65b9ecSFande Kong PetscFunctionBegin; 55149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55155c65b9ecSFande Kong /* plocalsize is the number of roots 55165c65b9ecSFande Kong * nrows is the number of leaves 55175c65b9ecSFande Kong * */ 55189566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55199566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55209566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55219566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55225c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55235c65b9ecSFande Kong /* Find a remote index and an owner for a row 55245c65b9ecSFande Kong * The row could be local or remote 55255c65b9ecSFande Kong * */ 552634bcad68SFande Kong owner = 0; 552734bcad68SFande Kong lidx = 0; 55289566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55295c65b9ecSFande Kong iremote[i].index = lidx; 55305c65b9ecSFande Kong iremote[i].rank = owner; 55315c65b9ecSFande Kong } 55325c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55339566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5534f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55355c65b9ecSFande Kong * offsets 55365c65b9ecSFande Kong * */ 55379566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55389566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55399566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5540bc8e477aSFande Kong 55419566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55429566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55439566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55445c65b9ecSFande Kong roffsets[0] = 0; 55455c65b9ecSFande Kong roffsets[1] = 0; 55465c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55474cf0e950SBarry Smith /* diagonal */ 55485c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55494cf0e950SBarry Smith /* off-diagonal */ 55505c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55515c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55525c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55535c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55545c65b9ecSFande Kong } 55559566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55569566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55575c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55589566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55599566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55609566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55619566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55629566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55639566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55649566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55655c65b9ecSFande Kong dntotalcols = 0; 55665c65b9ecSFande Kong ontotalcols = 0; 5567bc8e477aSFande Kong ncol = 0; 55685c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55695c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5570bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55714cf0e950SBarry Smith /* diagonal */ 55725c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55734cf0e950SBarry Smith /* off-diagonal */ 55745c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55755c65b9ecSFande Kong } 55765c65b9ecSFande Kong /* We do not need to figure the right number of columns 55775c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55785c65b9ecSFande Kong * */ 55799566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55809566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55819566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55825c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55834cf0e950SBarry Smith /* diagonal */ 55849566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55854cf0e950SBarry Smith /* off-diagonal */ 55869566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55874cf0e950SBarry Smith /* diagonal */ 55889566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55894cf0e950SBarry Smith /* off-diagonal */ 55909566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55915c65b9ecSFande Kong dntotalcols = 0; 55925c65b9ecSFande Kong ontotalcols = 0; 55935c65b9ecSFande Kong ntotalcols = 0; 55945c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 559534bcad68SFande Kong owner = 0; 55969566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55975c65b9ecSFande Kong /* Set iremote for diag matrix */ 55985c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55995c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 56005c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 56015c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 56025c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 56035c65b9ecSFande Kong } 56044cf0e950SBarry Smith /* off-diagonal */ 56055c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 56065c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 56075c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 56085c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 56095c65b9ecSFande Kong } 56105c65b9ecSFande Kong } 56119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 56129566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 56139566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56155c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56165c65b9ecSFande Kong * Diag matrix 56175c65b9ecSFande Kong * */ 56189566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56199566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56209566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56215c65b9ecSFande Kong 56229566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56234cf0e950SBarry Smith /* off-diagonal */ 56249566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56259566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56269566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56294cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56309566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56319566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56329566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56335c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56345c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56359566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56365c65b9ecSFande Kong /* We want P_oth store global indices */ 56379566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56385c65b9ecSFande Kong /* Use memory scalable approach */ 56399566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56409566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56429566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56435c65b9ecSFande Kong /* Convert back to local indices */ 56445c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56459566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56465c65b9ecSFande Kong nout = 0; 56479566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 564808401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56499566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56505c65b9ecSFande Kong /* Exchange values */ 56519566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56555c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56565c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56579566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56589566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56595c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56609566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56619566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56629566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56639566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56655c65b9ecSFande Kong } 56665c65b9ecSFande Kong 56675c65b9ecSFande Kong /* 56685c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56695c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56705c65b9ecSFande Kong * */ 5671d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5672d71ae5a4SJacob Faibussowitsch { 56735c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5674bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5675bc8e477aSFande Kong IS rows, map; 5676bc8e477aSFande Kong PetscHMapI hamp; 5677bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56785c65b9ecSFande Kong MPI_Comm comm; 56795c65b9ecSFande Kong PetscSF sf, osf; 5680bc8e477aSFande Kong PetscBool has; 56815c65b9ecSFande Kong 56825c65b9ecSFande Kong PetscFunctionBegin; 56839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56849566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56855c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56865c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56875c65b9ecSFande Kong * */ 56885c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56895c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5690eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5692bc8e477aSFande Kong count = 0; 5693bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5694bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5695bc8e477aSFande Kong key = a->garray[i] / dof; 56969566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5697bc8e477aSFande Kong if (!has) { 5698bc8e477aSFande Kong mapping[i] = count; 56999566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5700bc8e477aSFande Kong } else { 5701bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5702bc8e477aSFande Kong mapping[i] = count - 1; 57035c65b9ecSFande Kong } 5704bc8e477aSFande Kong } 57059566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 57069566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5707eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 57089566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 57095c65b9ecSFande Kong off = 0; 57109566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 57119566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 57129566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 57139566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57145c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57159566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57169566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57179566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57205c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57215c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 572235cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5723fff043a9SJunchao Zhang */ 5724fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5725fff043a9SJunchao Zhang 57269566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57279566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 572808401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57295c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57305c65b9ecSFande Kong /* Update values in place */ 57319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57339566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57349566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57359566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57369566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57379566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57396718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57409566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57425c65b9ecSFande Kong } 57435c65b9ecSFande Kong 574425616d81SHong Zhang /*@C 574520f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 574625616d81SHong Zhang 5747c3339decSBarry Smith Collective 574825616d81SHong Zhang 574925616d81SHong Zhang Input Parameters: 575011a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 575111a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 575211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 575325616d81SHong Zhang 5754f1a722f8SMatthew G. Knepley Output Parameters: 575527430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 575627430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5757f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 575825616d81SHong Zhang 575925616d81SHong Zhang Level: developer 576025616d81SHong Zhang 576120f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 576225616d81SHong Zhang @*/ 5763d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5764d71ae5a4SJacob Faibussowitsch { 5765899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5766b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 576725616d81SHong Zhang IS isrowb, iscolb; 57680298fd71SBarry Smith Mat *bseq = NULL; 576925616d81SHong Zhang 577025616d81SHong Zhang PetscFunctionBegin; 577120f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 577220f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57739566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 577425616d81SHong Zhang 577525616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5776d0f46423SBarry Smith start = A->cmap->rstart; 577725616d81SHong Zhang cmap = a->garray; 5778d0f46423SBarry Smith nzA = a->A->cmap->n; 5779d0f46423SBarry Smith nzB = a->B->cmap->n; 57809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 578125616d81SHong Zhang ncols = 0; 57820390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 578325616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 578425616d81SHong Zhang else break; 578525616d81SHong Zhang } 578625616d81SHong Zhang imark = i; 57870390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57880390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57899566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57909566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 579125616d81SHong Zhang } else { 579208401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57939371c9d4SSatish Balay isrowb = *rowb; 57949371c9d4SSatish Balay iscolb = *colb; 57959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 579625616d81SHong Zhang bseq[0] = *B_seq; 579725616d81SHong Zhang } 57989566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 579925616d81SHong Zhang *B_seq = bseq[0]; 58009566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 580125616d81SHong Zhang if (!rowb) { 58029566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 580325616d81SHong Zhang } else { 580425616d81SHong Zhang *rowb = isrowb; 580525616d81SHong Zhang } 580625616d81SHong Zhang if (!colb) { 58079566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 580825616d81SHong Zhang } else { 580925616d81SHong Zhang *colb = iscolb; 581025616d81SHong Zhang } 58119566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 58123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 581325616d81SHong Zhang } 5814429d309bSHong Zhang 5815f8487c73SHong Zhang /* 581627430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 581701b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5818429d309bSHong Zhang 5819c3339decSBarry Smith Collective 5820429d309bSHong Zhang 5821429d309bSHong Zhang Input Parameters: 582227430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 582327430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5824429d309bSHong Zhang 5825429d309bSHong Zhang Output Parameter: 58260298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58270298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58280298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5829598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5830429d309bSHong Zhang 583111a5261eSBarry Smith Developer Note: 583211a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58336eb45d04SBarry Smith for this matrix. This is not desirable.. 58346eb45d04SBarry Smith 5835429d309bSHong Zhang Level: developer 5836429d309bSHong Zhang 5837f8487c73SHong Zhang */ 58386497c311SBarry Smith 5839d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5840d71ae5a4SJacob Faibussowitsch { 5841899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 58424b8d542aSHong Zhang VecScatter ctx; 5843ce94432eSBarry Smith MPI_Comm comm; 58443515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58456497c311SBarry Smith PetscMPIInt nrecvs, nsends; 58463515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5847277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 58486497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5849277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5850ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5851ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5852429d309bSHong Zhang 5853429d309bSHong Zhang PetscFunctionBegin; 58549566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5856a7c7454dSHong Zhang 585720f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 585820f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58599566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5861a6b2eed2SHong Zhang 5862ec07b8f8SHong Zhang if (size == 1) { 5863ec07b8f8SHong Zhang startsj_s = NULL; 5864ec07b8f8SHong Zhang bufa_ptr = NULL; 586552f7967eSHong Zhang *B_oth = NULL; 58663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5867ec07b8f8SHong Zhang } 5868ec07b8f8SHong Zhang 5869fa83eaafSHong Zhang ctx = a->Mvctx; 58704b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58714b8d542aSHong Zhang 58729566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58733515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58749566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58759566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5877ddea5d60SJunchao Zhang rwaits = reqs; 58788e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5879429d309bSHong Zhang 5880b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5881429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5882a6b2eed2SHong Zhang /* i-array */ 5883a6b2eed2SHong Zhang /* post receives */ 58849566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5885a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 588674268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5887e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58886497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5889429d309bSHong Zhang } 5890a6b2eed2SHong Zhang 5891a6b2eed2SHong Zhang /* pack the outgoing message */ 58929566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58932205254eSKarl Rupp 58942205254eSKarl Rupp sstartsj[0] = 0; 58952205254eSKarl Rupp rstartsj[0] = 0; 5896a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58973515ee7fSJunchao Zhang if (nsends) { 58983515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 59003515ee7fSJunchao Zhang } 5901a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 59023515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5903e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 590487025532SHong Zhang for (j = 0; j < nrows; j++) { 5905d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5906e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 59079566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 59082205254eSKarl Rupp 5909e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 59102205254eSKarl Rupp 5911e42f35eeSHong Zhang len += ncols; 59129566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5913e42f35eeSHong Zhang } 5914a6b2eed2SHong Zhang k++; 5915429d309bSHong Zhang } 59166497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59172205254eSKarl Rupp 5918dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5919429d309bSHong Zhang } 592087025532SHong Zhang /* recvs and sends of i-array are completed */ 59219566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59229566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5923e42f35eeSHong Zhang 5924a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5927a6b2eed2SHong Zhang 592887025532SHong Zhang /* create i-array of B_oth */ 59299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59302205254eSKarl Rupp 593187025532SHong Zhang b_othi[0] = 0; 5932a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5933a6b2eed2SHong Zhang k = 0; 5934a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59353515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59363515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 593787025532SHong Zhang for (j = 0; j < nrows; j++) { 593887025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59399566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5940f91af8c7SBarry Smith k++; 5941a6b2eed2SHong Zhang } 5942dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5943a6b2eed2SHong Zhang } 59449566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5945a6b2eed2SHong Zhang 59466aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5949a6b2eed2SHong Zhang 595087025532SHong Zhang /* j-array */ 5951a6b2eed2SHong Zhang /* post receives of j-array */ 5952a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 595387025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59546497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5955a6b2eed2SHong Zhang } 5956e42f35eeSHong Zhang 5957e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59583515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5959a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5960e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5961a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 596287025532SHong Zhang for (j = 0; j < nrows; j++) { 5963d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5964e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59659566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5966ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5968e42f35eeSHong Zhang } 596987025532SHong Zhang } 59706497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 597187025532SHong Zhang } 597287025532SHong Zhang 597387025532SHong Zhang /* recvs and sends of j-array are completed */ 59749566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 597587025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5976b7f45c76SHong Zhang sstartsj = *startsj_s; 59771d79065fSBarry Smith rstartsj = *startsj_r; 597887025532SHong Zhang bufa = *bufa_ptr; 59799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5980ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 598187025532SHong Zhang 598287025532SHong Zhang /* a-array */ 598387025532SHong Zhang /* post receives of a-array */ 598487025532SHong Zhang for (i = 0; i < nrecvs; i++) { 598587025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59866497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 598787025532SHong Zhang } 5988e42f35eeSHong Zhang 5989e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59903515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 599187025532SHong Zhang for (i = 0; i < nsends; i++) { 5992e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 599387025532SHong Zhang bufA = bufa + sstartsj[i]; 599487025532SHong Zhang for (j = 0; j < nrows; j++) { 5995d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5996e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59979566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5998ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59999566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 6000e42f35eeSHong Zhang } 6001a6b2eed2SHong Zhang } 60026497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 6003a6b2eed2SHong Zhang } 600487025532SHong Zhang /* recvs and sends of a-array are completed */ 60059566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 60069566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 6007a6b2eed2SHong Zhang 600887025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 6009dd460d27SBarry Smith Mat_SeqAIJ *b_oth; 6010dd460d27SBarry Smith 6011a6b2eed2SHong Zhang /* put together the new matrix */ 60129566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 6013a6b2eed2SHong Zhang 6014a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6015a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 601687025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6017e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6018e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 601987025532SHong Zhang b_oth->nonew = 0; 6020a6b2eed2SHong Zhang 60219566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6022b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60239566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60249566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6025dea91ad1SHong Zhang } else { 6026b7f45c76SHong Zhang *startsj_s = sstartsj; 60271d79065fSBarry Smith *startsj_r = rstartsj; 602887025532SHong Zhang *bufa_ptr = bufa; 602987025532SHong Zhang } 6030fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6032dea91ad1SHong Zhang } 60333515ee7fSJunchao Zhang 60349566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60359566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6038429d309bSHong Zhang } 6039ccd8e176SBarry Smith 6040cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6041cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6042ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60439779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6044a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6045191b95cbSRichard Tran Mills #endif 6046ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6047cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60485d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6049cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60505d7652ecSHong Zhang #endif 6051d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6052d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6053d24d4204SJose E. Roman #endif 605463c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 605563c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 605663c07aadSStefano Zampini #endif 60573338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60583338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60593338378cSStefano Zampini #endif 6060d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6061d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6062d5e393b6SSuyash Tandon #endif 60633d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60643d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60653d0639e7SStefano Zampini #endif 6066d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60674222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60684222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 606917667f90SBarry Smith 6070fc4dec0aSBarry Smith /* 6071fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6072fc4dec0aSBarry Smith 6073fc4dec0aSBarry Smith n p p 60742da392ccSBarry Smith [ ] [ ] [ ] 60752da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60762da392ccSBarry Smith [ ] [ ] [ ] 6077fc4dec0aSBarry Smith 6078fc4dec0aSBarry Smith */ 6079d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6080d71ae5a4SJacob Faibussowitsch { 6081fc4dec0aSBarry Smith Mat At, Bt, Ct; 6082fc4dec0aSBarry Smith 6083fc4dec0aSBarry Smith PetscFunctionBegin; 60849566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60859566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6086fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 60879566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60889566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60897fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60909566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60919566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6093fc4dec0aSBarry Smith } 6094fc4dec0aSBarry Smith 6095d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6096d71ae5a4SJacob Faibussowitsch { 60976718818eSStefano Zampini PetscBool cisdense; 6098fc4dec0aSBarry Smith 6099fc4dec0aSBarry Smith PetscFunctionBegin; 610008401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 61019566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 61029566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6103d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 610448a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 61059566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6106f75ecaa4SHong Zhang 61074222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 61083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6109fc4dec0aSBarry Smith } 6110fc4dec0aSBarry Smith 6111d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6112d71ae5a4SJacob Faibussowitsch { 61134222ddf1SHong Zhang Mat_Product *product = C->product; 61144222ddf1SHong Zhang Mat A = product->A, B = product->B; 6115fc4dec0aSBarry Smith 6116fc4dec0aSBarry Smith PetscFunctionBegin; 611720f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 611820f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61194222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61204222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6122fc4dec0aSBarry Smith } 6123fc4dec0aSBarry Smith 6124d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6125d71ae5a4SJacob Faibussowitsch { 61264222ddf1SHong Zhang Mat_Product *product = C->product; 61274222ddf1SHong Zhang 61284222ddf1SHong Zhang PetscFunctionBegin; 612948a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61314222ddf1SHong Zhang } 6132394ed5ebSJunchao Zhang 613327430b45SBarry Smith /* 613427430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6135394ed5ebSJunchao Zhang 6136394ed5ebSJunchao Zhang Input Parameters: 6137394ed5ebSJunchao Zhang 6138651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6139651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6140394ed5ebSJunchao Zhang 6141158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6142394ed5ebSJunchao Zhang 6143394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6144394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6145394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6146394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6147394ed5ebSJunchao Zhang 6148394ed5ebSJunchao Zhang Similar for Set2. 6149394ed5ebSJunchao Zhang 6150394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6151394ed5ebSJunchao Zhang 6152158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6153394ed5ebSJunchao Zhang 6154394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6155394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6156394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6157394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6158394ed5ebSJunchao Zhang */ 6159d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6160d71ae5a4SJacob Faibussowitsch { 6161394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6162394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6163394ed5ebSJunchao Zhang 6164394ed5ebSJunchao Zhang PetscFunctionBegin; 61659566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6166394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6167394ed5ebSJunchao Zhang i[0] = 0; 6168394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6169394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6170394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6171394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6172394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6173394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6174394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6175394ed5ebSJunchao Zhang j[t] = j1[b1]; 6176394ed5ebSJunchao Zhang imap1[t1] = t; 6177394ed5ebSJunchao Zhang imap2[t2] = t; 6178394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6179394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61809371c9d4SSatish Balay t1++; 61819371c9d4SSatish Balay t2++; 61829371c9d4SSatish Balay t++; 6183394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6184394ed5ebSJunchao Zhang j[t] = j1[b1]; 6185394ed5ebSJunchao Zhang imap1[t1] = t; 6186394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61879371c9d4SSatish Balay t1++; 61889371c9d4SSatish Balay t++; 6189394ed5ebSJunchao Zhang } else { 6190394ed5ebSJunchao Zhang j[t] = j2[b2]; 6191394ed5ebSJunchao Zhang imap2[t2] = t; 6192394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61939371c9d4SSatish Balay t2++; 61949371c9d4SSatish Balay t++; 6195394ed5ebSJunchao Zhang } 6196394ed5ebSJunchao Zhang } 6197394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6198394ed5ebSJunchao Zhang while (b1 < e1) { 6199394ed5ebSJunchao Zhang j[t] = j1[b1]; 6200394ed5ebSJunchao Zhang imap1[t1] = t; 6201394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 62029371c9d4SSatish Balay t1++; 62039371c9d4SSatish Balay t++; 6204394ed5ebSJunchao Zhang } 6205394ed5ebSJunchao Zhang while (b2 < e2) { 6206394ed5ebSJunchao Zhang j[t] = j2[b2]; 6207394ed5ebSJunchao Zhang imap2[t2] = t; 6208394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 62099371c9d4SSatish Balay t2++; 62109371c9d4SSatish Balay t++; 6211394ed5ebSJunchao Zhang } 62126497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6213394ed5ebSJunchao Zhang } 62143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6215394ed5ebSJunchao Zhang } 6216394ed5ebSJunchao Zhang 621727430b45SBarry Smith /* 621827430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6219394ed5ebSJunchao Zhang 6220394ed5ebSJunchao Zhang Input Parameters: 6221394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6222394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6223394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6224394ed5ebSJunchao Zhang 6225394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6226394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6227394ed5ebSJunchao Zhang 6228394ed5ebSJunchao Zhang Output Parameters: 6229394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6230394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6231394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6232394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6233394ed5ebSJunchao Zhang 6234394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6235158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6236158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6237394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6238394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6239394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6240394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6241394ed5ebSJunchao Zhang 6242394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6243394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6244394ed5ebSJunchao Zhang 6245394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6246394ed5ebSJunchao Zhang 6247158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6248394ed5ebSJunchao Zhang */ 6249d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6250d71ae5a4SJacob Faibussowitsch { 6251394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6252394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6253394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6254394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6255394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6256394ed5ebSJunchao Zhang 6257394ed5ebSJunchao Zhang PetscFunctionBegin; 62589566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62599566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6260394ed5ebSJunchao Zhang m = rend - rstart; 6261394ed5ebSJunchao Zhang 6262651b1cf9SStefano Zampini /* Skip negative rows */ 6263651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62649371c9d4SSatish Balay if (i[k] >= 0) break; 6265394ed5ebSJunchao Zhang 6266394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6267394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6268394ed5ebSJunchao Zhang */ 6269394ed5ebSJunchao Zhang while (k < n) { 6270394ed5ebSJunchao Zhang row = i[k]; 6271394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62729371c9d4SSatish Balay for (s = k; s < n; s++) 62739371c9d4SSatish Balay if (i[s] != row) break; 6274651b1cf9SStefano Zampini 62751690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6276394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 62771690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 627854c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6279394ed5ebSJunchao Zhang } 62809566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6281158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6282394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6283394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6284394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6285394ed5ebSJunchao Zhang 6286394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6287394ed5ebSJunchao Zhang Atot += mid - k; 6288394ed5ebSJunchao Zhang Btot += s - mid; 6289394ed5ebSJunchao Zhang 6290651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6291394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6292394ed5ebSJunchao Zhang col = j[p]; 62939371c9d4SSatish Balay do { 62941690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 62959371c9d4SSatish Balay p++; 6296651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6297394ed5ebSJunchao Zhang Annz++; 6298394ed5ebSJunchao Zhang } 6299394ed5ebSJunchao Zhang 6300651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6301394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6302394ed5ebSJunchao Zhang col = j[p]; 6303d71ae5a4SJacob Faibussowitsch do { 6304d71ae5a4SJacob Faibussowitsch p++; 6305d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6306394ed5ebSJunchao Zhang Bnnz++; 6307394ed5ebSJunchao Zhang } 6308394ed5ebSJunchao Zhang k = s; 6309394ed5ebSJunchao Zhang } 6310394ed5ebSJunchao Zhang 6311394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6312158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6313158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6314158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6315158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6316394ed5ebSJunchao Zhang 63176aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6318394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6319394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6320394ed5ebSJunchao Zhang k = rowBegin[r]; 6321394ed5ebSJunchao Zhang mid = rowMid[r]; 6322394ed5ebSJunchao Zhang s = rowEnd[r]; 63238e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63248e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6325394ed5ebSJunchao Zhang Atot += mid - k; 6326394ed5ebSJunchao Zhang Btot += s - mid; 6327394ed5ebSJunchao Zhang 6328394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6329394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6330394ed5ebSJunchao Zhang col = j[p]; 6331394ed5ebSJunchao Zhang q = p; 6332d71ae5a4SJacob Faibussowitsch do { 6333d71ae5a4SJacob Faibussowitsch p++; 6334d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6335394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6336394ed5ebSJunchao Zhang Annz++; 6337394ed5ebSJunchao Zhang } 6338394ed5ebSJunchao Zhang 6339394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6340394ed5ebSJunchao Zhang col = j[p]; 6341394ed5ebSJunchao Zhang q = p; 6342d71ae5a4SJacob Faibussowitsch do { 6343d71ae5a4SJacob Faibussowitsch p++; 6344d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6345394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6346394ed5ebSJunchao Zhang Bnnz++; 6347394ed5ebSJunchao Zhang } 6348394ed5ebSJunchao Zhang } 6349394ed5ebSJunchao Zhang /* Output */ 6350394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6351394ed5ebSJunchao Zhang *Annz_ = Annz; 6352394ed5ebSJunchao Zhang *Atot_ = Atot; 6353394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6354394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6355394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6356394ed5ebSJunchao Zhang *Btot_ = Btot; 6357394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6359394ed5ebSJunchao Zhang } 6360394ed5ebSJunchao Zhang 636127430b45SBarry Smith /* 636227430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6363158ec288SJunchao Zhang 6364158ec288SJunchao Zhang Input Parameters: 6365158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6366158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6367158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6368651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6369158ec288SJunchao Zhang 6370158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6371158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6372158ec288SJunchao Zhang 6373158ec288SJunchao Zhang Example: 6374158ec288SJunchao Zhang nnz1 = 4 6375158ec288SJunchao Zhang nnz = 6 6376158ec288SJunchao Zhang imap = [1,3,4,5] 6377158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6378158ec288SJunchao Zhang then, 6379158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6380158ec288SJunchao Zhang */ 6381d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6382d71ae5a4SJacob Faibussowitsch { 6383158ec288SJunchao Zhang PetscCount k, p; 6384158ec288SJunchao Zhang 6385158ec288SJunchao Zhang PetscFunctionBegin; 6386158ec288SJunchao Zhang jmap_new[0] = 0; 6387158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6388158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6389158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6390158ec288SJunchao Zhang } 6391158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6393158ec288SJunchao Zhang } 6394158ec288SJunchao Zhang 63952c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data) 63962c4ab24aSJunchao Zhang { 63972c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data; 63982c4ab24aSJunchao Zhang 63992c4ab24aSJunchao Zhang PetscFunctionBegin; 64002c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 64012c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 64022c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 64032c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 64042c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 64052c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 64062c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 64072c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 64082c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 64092c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 64102c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 64112c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 64122c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 64132c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 64142c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64152c4ab24aSJunchao Zhang } 64162c4ab24aSJunchao Zhang 6417d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6418d71ae5a4SJacob Faibussowitsch { 6419394ed5ebSJunchao Zhang MPI_Comm comm; 6420394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6421394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6422394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6423394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64242c4ab24aSJunchao Zhang PetscContainer container; 64252c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6426394ed5ebSJunchao Zhang 6427394ed5ebSJunchao Zhang PetscFunctionBegin; 64289566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6430cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6431eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6432cbc6b225SStefano Zampini #else 64339566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6434cbc6b225SStefano Zampini #endif 64359566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6436cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6437cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6438cbc6b225SStefano Zampini 64399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64439566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64449566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64459566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64469566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64479566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6448394ed5ebSJunchao Zhang 64496aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6450394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6451394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6452e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6453e8729f6fSJunchao Zhang 6454e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6455394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6456394ed5ebSJunchao Zhang 6457394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6458394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6459394ed5ebSJunchao Zhang will have positive row indices. 6460394ed5ebSJunchao Zhang */ 6461394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 64621690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 64631690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6464f7d195e4SLawrence Mitchell else { 6465f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 64661690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6467f7d195e4SLawrence Mitchell } 6468394ed5ebSJunchao Zhang } 6469394ed5ebSJunchao Zhang 6470da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64719566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6472651b1cf9SStefano Zampini 6473651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6474651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64751690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 64766497c311SBarry Smith PetscCount i1start = k; 6477651b1cf9SStefano Zampini 64781690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 64791690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6480394ed5ebSJunchao Zhang 6481394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6482394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6483394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6484394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6485394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6486394ed5ebSJunchao Zhang const PetscInt *ranges; 6487394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6488394ed5ebSJunchao Zhang 64899566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64909566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6491394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6492394ed5ebSJunchao Zhang PetscMPIInt owner; 6493394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6494cbc6b225SStefano Zampini 6495394ed5ebSJunchao Zhang /* Locate a row range */ 6496394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64979566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6498394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6499394ed5ebSJunchao Zhang 6500394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 65019566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6502394ed5ebSJunchao Zhang 6503394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6504394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6505394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6506394ed5ebSJunchao Zhang PetscInt *nentries2; 6507394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6508cbc6b225SStefano Zampini 65099566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 65109566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 65119566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 65129566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6513394ed5ebSJunchao Zhang sendto = sendto2; 6514394ed5ebSJunchao Zhang nentries = nentries2; 6515394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6516394ed5ebSJunchao Zhang } 6517394ed5ebSJunchao Zhang sendto[nsend] = owner; 65186497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6519394ed5ebSJunchao Zhang nsend++; 6520394ed5ebSJunchao Zhang k = p; 6521394ed5ebSJunchao Zhang } 6522394ed5ebSJunchao Zhang 6523394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6524394ed5ebSJunchao Zhang PetscSF sf1; 6525394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6526394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6527394ed5ebSJunchao Zhang PetscInt *offsets; 6528394ed5ebSJunchao Zhang PetscSFNode *iremote; 6529394ed5ebSJunchao Zhang 65309566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6533394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6534394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6535394ed5ebSJunchao Zhang iremote[k].index = 0; 6536394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 653754c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6538394ed5ebSJunchao Zhang } 65399566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65409566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65419566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65429566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6543e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6544394ed5ebSJunchao Zhang 6545394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6546394ed5ebSJunchao Zhang PetscSF sf2; 6547394ed5ebSJunchao Zhang nroots = nroots2; 6548394ed5ebSJunchao Zhang nleaves = nleaves2; 65499566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65509566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6552394ed5ebSJunchao Zhang p = 0; 6553394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 655454c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6555394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6556394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 65576497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6558394ed5ebSJunchao Zhang } 6559394ed5ebSJunchao Zhang } 65609566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6561394ed5ebSJunchao Zhang 6562394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6563394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6564394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65659566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6566834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6567834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6568de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6569de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6570834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6571834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6572834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6573834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6574394ed5ebSJunchao Zhang 65759566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65769566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6577394ed5ebSJunchao Zhang 6578394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6579394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65809566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6581394ed5ebSJunchao Zhang 6582651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6583651b1cf9SStefano Zampini PetscCount *Cperm1; 6584834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6585de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6586651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6587834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6588651b1cf9SStefano Zampini 6589651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6590651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6591651b1cf9SStefano Zampini PetscBool hypre; 659217b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6593651b1cf9SStefano Zampini if (hypre) { 6594651b1cf9SStefano Zampini PetscInt *minj; 6595651b1cf9SStefano Zampini PetscBT hasdiag; 6596651b1cf9SStefano Zampini 6597651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6598651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 65991690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6600651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6601651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6602651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6603651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6604651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6605651b1cf9SStefano Zampini } 6606651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6607651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6608651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6609651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6610651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6611651b1cf9SStefano Zampini } 6612651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6613651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6614651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6615651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6616651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6617651b1cf9SStefano Zampini } 6618651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6619651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6620651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6621651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6622651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6623651b1cf9SStefano Zampini } 6624651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6625651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6626651b1cf9SStefano Zampini } 6627651b1cf9SStefano Zampini 6628651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6629651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6630651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6631651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6632394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6633394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6634394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6635394ed5ebSJunchao Zhang 6636651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66379566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6638651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66399566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6640394ed5ebSJunchao Zhang 6641394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6642394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6643394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6644394ed5ebSJunchao Zhang 66459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6649394ed5ebSJunchao Zhang 6650394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6651158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6652158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6653158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6654158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6655394ed5ebSJunchao Zhang 66569566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66579566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6658158ec288SJunchao Zhang 6659158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6660158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6661158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6662158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6663158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6664158ec288SJunchao Zhang 6665158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6666158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6667158ec288SJunchao Zhang 6668158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6669158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6670158ec288SJunchao Zhang 6671158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6672158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6673158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6674158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66759566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66769566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6677e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66789566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6679394ed5ebSJunchao Zhang 6680158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6681158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6682158ec288SJunchao Zhang 6683394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6684394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6685394ed5ebSJunchao Zhang PetscInt *Aj_new; 66869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66879566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66889566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6689394ed5ebSJunchao Zhang Aj = Aj_new; 6690394ed5ebSJunchao Zhang } 6691394ed5ebSJunchao Zhang 6692394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6693394ed5ebSJunchao Zhang PetscInt *Bj_new; 66949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66959566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66969566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6697394ed5ebSJunchao Zhang Bj = Bj_new; 6698394ed5ebSJunchao Zhang } 6699394ed5ebSJunchao Zhang 6700cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6701394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6702cbc6b225SStefano Zampini MatType rtype; 6703394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6704cf8ba265SJunchao Zhang PetscObjectState state; 67059566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 67069566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6707394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 67089371c9d4SSatish Balay if (cstart) { 67099371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 67109371c9d4SSatish Balay } 6711c508b908SBarry Smith 67129566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6713c508b908SBarry Smith 6714c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6715c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 67169566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 67170da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6718c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6719c508b908SBarry Smith 6720c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6721c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 67229566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67230da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6724c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6725c508b908SBarry Smith 67269566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67275bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6728cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6729462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6730cbc6b225SStefano Zampini 6731394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6732394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 67339f0612e4SBarry Smith a->free_a = PETSC_TRUE; 67349f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 67359f0612e4SBarry Smith b->free_a = PETSC_TRUE; 67369f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 673717b874c6SStefano Zampini a->maxnz = a->nz; 673817b874c6SStefano Zampini b->maxnz = b->nz; 6739394ed5ebSJunchao Zhang 6740cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67419566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67429566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67449566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6745cbc6b225SStefano Zampini 67462c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67472c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67482c4ab24aSJunchao Zhang coo->n = coo_n; 67492c4ab24aSJunchao Zhang coo->sf = sf2; 67502c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67512c4ab24aSJunchao Zhang coo->recvlen = nroots; 67522c4ab24aSJunchao Zhang coo->Annz = Annz; 67532c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67542c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67552c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67562c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67572c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67582c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67592c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67602c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67612c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67622c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67632c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67642c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67652c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67662c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67672c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67682c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67692c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67702c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67712c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67722c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67732c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67742c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 67752c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67762c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67772c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6779394ed5ebSJunchao Zhang } 6780394ed5ebSJunchao Zhang 6781d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6782d71ae5a4SJacob Faibussowitsch { 6783394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6784394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6785394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67862c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67872c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67882c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67892c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67902c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67912c4ab24aSJunchao Zhang PetscContainer container; 67922c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6793394ed5ebSJunchao Zhang 6794394ed5ebSJunchao Zhang PetscFunctionBegin; 67952c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67962c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67972c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67982c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67992c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 68002c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 68012c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 68022c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 68032c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 68042c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 68052c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 68062c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 68072c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 68082c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 68092c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 68102c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 68112c4ab24aSJunchao Zhang 68129566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 68139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6814394ed5ebSJunchao Zhang 6815394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 68162c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6817394ed5ebSJunchao Zhang 6818394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 68192c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6820394ed5ebSJunchao Zhang /* Add local entries to A and B */ 68212c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6822da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6823158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6824158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6825394ed5ebSJunchao Zhang } 68262c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6827158ec288SJunchao Zhang PetscScalar sum = 0.0; 6828158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6829158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6830394ed5ebSJunchao Zhang } 68312c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6832394ed5ebSJunchao Zhang 6833394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68342c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6835394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6836394ed5ebSJunchao Zhang } 68372c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6838394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6839394ed5ebSJunchao Zhang } 68409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6843394ed5ebSJunchao Zhang } 6844394ed5ebSJunchao Zhang 6845ccd8e176SBarry Smith /*MC 6846ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6847ccd8e176SBarry Smith 6848ccd8e176SBarry Smith Options Database Keys: 684911a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6850ccd8e176SBarry Smith 6851ccd8e176SBarry Smith Level: beginner 68520cd7f59aSBarry Smith 68530cd7f59aSBarry Smith Notes: 68542ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68550cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68560cd7f59aSBarry Smith in the matrix 68570cd7f59aSBarry Smith 685811a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 685911a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6860ccd8e176SBarry Smith 68611cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6862ccd8e176SBarry Smith M*/ 6863d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6864d71ae5a4SJacob Faibussowitsch { 6865ccd8e176SBarry Smith Mat_MPIAIJ *b; 6866ccd8e176SBarry Smith PetscMPIInt size; 6867ccd8e176SBarry Smith 6868ccd8e176SBarry Smith PetscFunctionBegin; 68699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68702205254eSKarl Rupp 68714dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6872ccd8e176SBarry Smith B->data = (void *)b; 6873aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6874ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6875ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6876ccd8e176SBarry Smith b->size = size; 68772205254eSKarl Rupp 68789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6879ccd8e176SBarry Smith 6880ccd8e176SBarry Smith /* build cache for off array entries formed */ 68819566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68822205254eSKarl Rupp 6883ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6884f4259b30SLisandro Dalcin b->colmap = NULL; 6885f4259b30SLisandro Dalcin b->garray = NULL; 6886ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6887ccd8e176SBarry Smith 6888ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68890298fd71SBarry Smith b->lvec = NULL; 68900298fd71SBarry Smith b->Mvctx = NULL; 6891ccd8e176SBarry Smith 6892ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6893f4259b30SLisandro Dalcin b->rowindices = NULL; 6894f4259b30SLisandro Dalcin b->rowvalues = NULL; 6895ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6896ccd8e176SBarry Smith 6897f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68980298fd71SBarry Smith b->spptr = NULL; 6899f60c3dc2SHong Zhang 69009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 69019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 69029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 69039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 69049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 69059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 69069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 69079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 69089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 69099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 69103d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 69119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 69123d0639e7SStefano Zampini #endif 6913d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6914d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6915d5e393b6SSuyash Tandon #endif 69163d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 69179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 69183d0639e7SStefano Zampini #endif 69199779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 69209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6921191b95cbSRichard Tran Mills #endif 69229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 69239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 69249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 69259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69265d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69285d7652ecSHong Zhang #endif 6929d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6931d24d4204SJose E. Roman #endif 69329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69343dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69373dad0653Sstefano_zampini #endif 69389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69429566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6944ccd8e176SBarry Smith } 694581824310SBarry Smith 69465d83a8b1SBarry Smith /*@ 694711a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 694803bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 694903bfb495SBarry Smith 6950d083f849SBarry Smith Collective 695103bfb495SBarry Smith 695203bfb495SBarry Smith Input Parameters: 695303bfb495SBarry Smith + comm - MPI communicator 695411a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 695503bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6956d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69572ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69582ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69592ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6960483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 696104ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 696203bfb495SBarry Smith . a - matrix values 6963483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69642ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 696503bfb495SBarry Smith - oa - matrix values 696603bfb495SBarry Smith 696703bfb495SBarry Smith Output Parameter: 696803bfb495SBarry Smith . mat - the matrix 696903bfb495SBarry Smith 697003bfb495SBarry Smith Level: advanced 697103bfb495SBarry Smith 697203bfb495SBarry Smith Notes: 6973f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6974292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 697503bfb495SBarry Smith 69762ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 697703bfb495SBarry Smith 69782ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 697903bfb495SBarry Smith 69807b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69817b55108eSBarry Smith 6982dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6983dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6984dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6985dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 698611a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6987dca341c0SJed Brown communication if it is known that only local entries will be set. 698803bfb495SBarry Smith 69891cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6990db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69912b26979fSBarry Smith @*/ 6992d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6993d71ae5a4SJacob Faibussowitsch { 699403bfb495SBarry Smith Mat_MPIAIJ *maij; 699503bfb495SBarry Smith 699603bfb495SBarry Smith PetscFunctionBegin; 699708401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6998aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6999aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 70009566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 70019566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 70029566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 700303bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 70042205254eSKarl Rupp 70058d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 700603bfb495SBarry Smith 70079566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 70089566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 700903bfb495SBarry Smith 70109566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 70119566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 701203bfb495SBarry Smith 70139566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 70149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 70159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 70169566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 70179566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 70183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 701903bfb495SBarry Smith } 702003bfb495SBarry Smith 70214e84afc0SStefano Zampini typedef struct { 70224e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 70234e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 70244e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 70254e84afc0SStefano Zampini 70264e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70274e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70284e84afc0SStefano Zampini PetscScalar *bufa; 70294e84afc0SStefano Zampini Mat P_oth; 70304e84afc0SStefano Zampini 70314e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7032ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70334e84afc0SStefano Zampini 7034ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70354e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70364e84afc0SStefano Zampini of the temporary storage */ 70374e84afc0SStefano Zampini PetscBool reusesym; 70384e84afc0SStefano Zampini 70394e84afc0SStefano Zampini /* support for COO values insertion */ 7040ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7041ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7042ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7043ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7044c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7045c215019aSStefano Zampini PetscMemType mtype; 70464e84afc0SStefano Zampini 70474e84afc0SStefano Zampini /* customization */ 70484e84afc0SStefano Zampini PetscBool abmerge; 7049abb89eb1SStefano Zampini PetscBool P_oth_bind; 70504e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70514e84afc0SStefano Zampini 7052ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7053d71ae5a4SJacob Faibussowitsch { 70544e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70554e84afc0SStefano Zampini PetscInt i; 70564e84afc0SStefano Zampini 70574e84afc0SStefano Zampini PetscFunctionBegin; 70589566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70599566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70609566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70619566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70629566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70639566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70649566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 706548a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70669566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70679566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70689566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70699566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70709566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70719566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70734e84afc0SStefano Zampini } 70744e84afc0SStefano Zampini 7075fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7076fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7077fff043a9SJunchao Zhang */ 7078d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7079d71ae5a4SJacob Faibussowitsch { 7080c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7081c215019aSStefano Zampini 7082c215019aSStefano Zampini PetscFunctionBegin; 70839566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7084c215019aSStefano Zampini if (f) { 70859566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7086c215019aSStefano Zampini } else { 7087c215019aSStefano Zampini const PetscScalar *vv; 7088c215019aSStefano Zampini 70899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7090c215019aSStefano Zampini if (n && idx) { 7091c215019aSStefano Zampini PetscScalar *w = v; 7092c215019aSStefano Zampini const PetscInt *oi = idx; 7093c215019aSStefano Zampini PetscInt j; 7094c215019aSStefano Zampini 7095c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7096c215019aSStefano Zampini } else { 70979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7098c215019aSStefano Zampini } 70999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7100c215019aSStefano Zampini } 71013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7102c215019aSStefano Zampini } 7103c215019aSStefano Zampini 7104d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7105d71ae5a4SJacob Faibussowitsch { 71064e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71074e84afc0SStefano Zampini PetscInt i, n_d, n_o; 71084e84afc0SStefano Zampini 71094e84afc0SStefano Zampini PetscFunctionBegin; 71104e84afc0SStefano Zampini MatCheckProduct(C, 1); 711128b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 71124e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 71134e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 711448a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 711548a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 71164e84afc0SStefano Zampini } 71174e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7118abb89eb1SStefano Zampini 7119abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 712008401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 71219566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7122abb89eb1SStefano Zampini } 71234e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 71246497c311SBarry Smith PetscInt noff; 71254e84afc0SStefano Zampini 71266497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 71274e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71284e84afc0SStefano Zampini if (noff) { 71296497c311SBarry Smith PetscInt nown; 7130c215019aSStefano Zampini 71316497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 71329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71344e84afc0SStefano Zampini n_o += noff; 71354e84afc0SStefano Zampini n_d += nown; 71364e84afc0SStefano Zampini } else { 7137c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7138c215019aSStefano Zampini 71399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71404e84afc0SStefano Zampini n_d += mm->nz; 71414e84afc0SStefano Zampini } 71424e84afc0SStefano Zampini } 7143c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71449566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71459566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71464e84afc0SStefano Zampini } 71479566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71494e84afc0SStefano Zampini } 71504e84afc0SStefano Zampini 71514e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71524e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7153d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7154d71ae5a4SJacob Faibussowitsch { 71554e84afc0SStefano Zampini Mat_Product *product = C->product; 7156ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71574e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71584e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71594e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71604e84afc0SStefano Zampini IS glob = NULL; 71614e84afc0SStefano Zampini const char *prefix; 71624e84afc0SStefano Zampini char pprefix[256]; 71634e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 716482a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 716582a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7166ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7167ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7168ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7169ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7170ddea5d60SJunchao Zhang 71714e84afc0SStefano Zampini MatProductType ptype; 7172d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71734e84afc0SStefano Zampini PetscMPIInt size; 71744e84afc0SStefano Zampini 71754e84afc0SStefano Zampini PetscFunctionBegin; 71764e84afc0SStefano Zampini MatCheckProduct(C, 1); 717728b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71784e84afc0SStefano Zampini ptype = product->type; 7179b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7180fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7181fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7182fa046f9fSJunchao Zhang } 71834e84afc0SStefano Zampini switch (ptype) { 71844e84afc0SStefano Zampini case MATPRODUCT_AB: 71854e84afc0SStefano Zampini A = product->A; 71864e84afc0SStefano Zampini P = product->B; 71874e84afc0SStefano Zampini m = A->rmap->n; 71884e84afc0SStefano Zampini n = P->cmap->n; 71894e84afc0SStefano Zampini M = A->rmap->N; 71904e84afc0SStefano Zampini N = P->cmap->N; 7191ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71924e84afc0SStefano Zampini break; 71934e84afc0SStefano Zampini case MATPRODUCT_AtB: 71944e84afc0SStefano Zampini P = product->A; 71954e84afc0SStefano Zampini A = product->B; 71964e84afc0SStefano Zampini m = P->cmap->n; 71974e84afc0SStefano Zampini n = A->cmap->n; 71984e84afc0SStefano Zampini M = P->cmap->N; 71994e84afc0SStefano Zampini N = A->cmap->N; 72004e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 72014e84afc0SStefano Zampini break; 72024e84afc0SStefano Zampini case MATPRODUCT_PtAP: 72034e84afc0SStefano Zampini A = product->A; 72044e84afc0SStefano Zampini P = product->B; 72054e84afc0SStefano Zampini m = P->cmap->n; 72064e84afc0SStefano Zampini n = P->cmap->n; 72074e84afc0SStefano Zampini M = P->cmap->N; 72084e84afc0SStefano Zampini N = P->cmap->N; 72094e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 72104e84afc0SStefano Zampini break; 7211d71ae5a4SJacob Faibussowitsch default: 7212d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 72134e84afc0SStefano Zampini } 72149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 72154e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 72164e84afc0SStefano Zampini 72174e84afc0SStefano Zampini /* defaults */ 72184e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 72194e84afc0SStefano Zampini mp[i] = NULL; 72204e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 72214e84afc0SStefano Zampini rmapt[i] = -1; 72224e84afc0SStefano Zampini cmapt[i] = -1; 72234e84afc0SStefano Zampini rmapa[i] = NULL; 72244e84afc0SStefano Zampini cmapa[i] = NULL; 72254e84afc0SStefano Zampini } 72264e84afc0SStefano Zampini 72274e84afc0SStefano Zampini /* customization */ 72289566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72294e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72304e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72314e84afc0SStefano Zampini if (product->api_user) { 7232d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72339566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72349566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7235d0609cedSBarry Smith PetscOptionsEnd(); 72364e84afc0SStefano Zampini } else { 7237d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72389566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72399566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7240d0609cedSBarry Smith PetscOptionsEnd(); 7241abb89eb1SStefano Zampini } 7242abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7243abb89eb1SStefano Zampini if (product->api_user) { 7244d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72459566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7246d0609cedSBarry Smith PetscOptionsEnd(); 7247abb89eb1SStefano Zampini } else { 7248d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72499566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7250d0609cedSBarry Smith PetscOptionsEnd(); 72514e84afc0SStefano Zampini } 72524e84afc0SStefano Zampini } 72534e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72544e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72559566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72569566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72579566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72589566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72599566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7260ddea5d60SJunchao Zhang 7261ddea5d60SJunchao Zhang cp = 0; 72624e84afc0SStefano Zampini switch (ptype) { 72634e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72649566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72654e84afc0SStefano Zampini 7266ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7267ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72684e84afc0SStefano Zampini /* P is product->B */ 72699566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72709566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72719566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72729566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72739566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72749566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72759566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72764e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72779566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72789566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72799566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72804e84afc0SStefano Zampini rmapt[cp] = 1; 72814e84afc0SStefano Zampini cmapt[cp] = 2; 72824e84afc0SStefano Zampini cmapa[cp] = globidx; 72834e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72844e84afc0SStefano Zampini cp++; 7285ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72869566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72879566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72889566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72899566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72909566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72919566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72924e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72939566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72949566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72954e84afc0SStefano Zampini rmapt[cp] = 1; 72964e84afc0SStefano Zampini cmapt[cp] = 1; 72974e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72984e84afc0SStefano Zampini cp++; 72999566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 73009566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73019566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73029566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73039566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73049566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73054e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73069566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73079566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73084e84afc0SStefano Zampini rmapt[cp] = 1; 73094e84afc0SStefano Zampini cmapt[cp] = 2; 73104e84afc0SStefano Zampini cmapa[cp] = p->garray; 73114e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73124e84afc0SStefano Zampini cp++; 73134e84afc0SStefano Zampini } 7314ddea5d60SJunchao Zhang 7315ddea5d60SJunchao Zhang /* A_off * P_other */ 73164e84afc0SStefano Zampini if (mmdata->P_oth) { 73179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 73189566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7319f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73209566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73219566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73229566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73239566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73249566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73259566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73269566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73274e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73289566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73299566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73304e84afc0SStefano Zampini rmapt[cp] = 1; 73314e84afc0SStefano Zampini cmapt[cp] = 2; 73324e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73334e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73344e84afc0SStefano Zampini cp++; 73354e84afc0SStefano Zampini } 73364e84afc0SStefano Zampini break; 7337ddea5d60SJunchao Zhang 73384e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73394e84afc0SStefano Zampini /* A is product->B */ 73409566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7341ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73429566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73439566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73449566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73459566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73469566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73479566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73484e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73499566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73509566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73519566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73524e84afc0SStefano Zampini rmapt[cp] = 2; 73534e84afc0SStefano Zampini rmapa[cp] = globidx; 73544e84afc0SStefano Zampini cmapt[cp] = 2; 73554e84afc0SStefano Zampini cmapa[cp] = globidx; 73564e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73574e84afc0SStefano Zampini cp++; 73584e84afc0SStefano Zampini } else { 73599566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73609566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73619566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73629566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73639566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73649566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73654e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73669566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73679566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73689566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73694e84afc0SStefano Zampini rmapt[cp] = 1; 73704e84afc0SStefano Zampini cmapt[cp] = 2; 73714e84afc0SStefano Zampini cmapa[cp] = globidx; 73724e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73734e84afc0SStefano Zampini cp++; 73749566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73759566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73769566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73779566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73789566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73799566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73804e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73819566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73829566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73834e84afc0SStefano Zampini rmapt[cp] = 2; 73844e84afc0SStefano Zampini rmapa[cp] = p->garray; 73854e84afc0SStefano Zampini cmapt[cp] = 2; 73864e84afc0SStefano Zampini cmapa[cp] = globidx; 73874e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73884e84afc0SStefano Zampini cp++; 73894e84afc0SStefano Zampini } 73904e84afc0SStefano Zampini break; 73914e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73929566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73934e84afc0SStefano Zampini /* P is product->B */ 73949566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73959566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73969566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73979566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73989566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73999566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74009566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74014e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74029566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74039566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74049566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 74054e84afc0SStefano Zampini rmapt[cp] = 2; 74064e84afc0SStefano Zampini rmapa[cp] = globidx; 74074e84afc0SStefano Zampini cmapt[cp] = 2; 74084e84afc0SStefano Zampini cmapa[cp] = globidx; 74094e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74104e84afc0SStefano Zampini cp++; 74114e84afc0SStefano Zampini if (mmdata->P_oth) { 74129566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 74139566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7414f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 74159566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 74169566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 74179566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 74189566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74199566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74209566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74219566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74224e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74239566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74249566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74254e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 74264e84afc0SStefano Zampini cp++; 74279566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74289566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74299566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74309566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74319566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74329566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74334e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74349566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74359566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74364e84afc0SStefano Zampini rmapt[cp] = 2; 74374e84afc0SStefano Zampini rmapa[cp] = globidx; 74384e84afc0SStefano Zampini cmapt[cp] = 2; 74394e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74404e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74414e84afc0SStefano Zampini cp++; 74424e84afc0SStefano Zampini } 74434e84afc0SStefano Zampini break; 7444d71ae5a4SJacob Faibussowitsch default: 7445d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74464e84afc0SStefano Zampini } 74474e84afc0SStefano Zampini /* sanity check */ 74489371c9d4SSatish Balay if (size > 1) 74499371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74504e84afc0SStefano Zampini 74519566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7452ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7453ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7454ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7455ddea5d60SJunchao Zhang } 74564e84afc0SStefano Zampini mmdata->cp = cp; 74574e84afc0SStefano Zampini C->product->data = mmdata; 74584e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74594e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74604e84afc0SStefano Zampini 7461c215019aSStefano Zampini /* memory type */ 7462c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7464d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7466c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7467d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74683214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7469c215019aSStefano Zampini 74704e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7471ddea5d60SJunchao Zhang 7472ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7473ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7474ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7475ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7476ddea5d60SJunchao Zhang */ 74774e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74784e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74794e84afc0SStefano Zampini if (mptmp[cp]) continue; 7480ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74814e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74824e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74834e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74844e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74854e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74864e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74874e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74884e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7489ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7490ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74914e84afc0SStefano Zampini } 74924e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74934e84afc0SStefano Zampini } 7494ddea5d60SJunchao Zhang 7495ddea5d60SJunchao Zhang /* 7496ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7497ddea5d60SJunchao Zhang 7498ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7499ddea5d60SJunchao Zhang 7500d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7501ddea5d60SJunchao Zhang 7502ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7503ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7504ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7505ddea5d60SJunchao Zhang 7506ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7507da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7508ddea5d60SJunchao Zhang */ 75099566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 75109566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7511ddea5d60SJunchao Zhang 7512ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7513ddea5d60SJunchao Zhang if (hasoffproc) { 75144e84afc0SStefano Zampini PetscSF msf; 75154e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 75164e84afc0SStefano Zampini 75179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 75189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 75199566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7520ddea5d60SJunchao Zhang 75214e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 75224e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75234e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 75244e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7525ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 75264e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75274e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75284e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75294e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75304e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75314e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75324e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75334e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75344e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75354e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75364e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75374e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75384e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7539ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75404e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75414e84afc0SStefano Zampini *coi++ = gr; 75424e84afc0SStefano Zampini *idxoff++ = j; 75434e84afc0SStefano Zampini } 75444e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75454e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75464e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75474e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75484e84afc0SStefano Zampini } else { /* offdiag */ 75494e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75504e84afc0SStefano Zampini } 75514e84afc0SStefano Zampini ncoo_o += nz; 7552ddea5d60SJunchao Zhang } else { /* this is a local row */ 75534e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75544e84afc0SStefano Zampini } 75554e84afc0SStefano Zampini } 75564e84afc0SStefano Zampini } 75574e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75584e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75594e84afc0SStefano Zampini } 75604e84afc0SStefano Zampini 75619566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75626497c311SBarry Smith PetscInt incoo_o; 75636497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 75646497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75659566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75669566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75674e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75689566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75699566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75709566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75719566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75729566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75739566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7574ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75759566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75764e84afc0SStefano Zampini coo_i = coo_i2; 75774e84afc0SStefano Zampini coo_j = coo_j2; 75784e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75794e84afc0SStefano Zampini ncoo = ncoo_d; 75809566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7581c215019aSStefano Zampini 75829566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75839566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75849566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75854e84afc0SStefano Zampini } 7586c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75874e84afc0SStefano Zampini 7588ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75894e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75904e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75914e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75924e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75934e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75944e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75954e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75964e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75974e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75984e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75994e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 76004e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 76014e84afc0SStefano Zampini 76024e84afc0SStefano Zampini if (mptmp[cp]) continue; 7603ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7604ddea5d60SJunchao Zhang /* fill coo_i */ 76054e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76064e84afc0SStefano Zampini const PetscInt gr = i + rs; 76074e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 76084e84afc0SStefano Zampini } 7609ddea5d60SJunchao Zhang /* fill coo_j */ 7610ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76119566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7612ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7613ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7614ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76154e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 76164e84afc0SStefano Zampini } 76174e84afc0SStefano Zampini ncoo_d += mm->nz; 7618ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 76194e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76204e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 76214e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 76224e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7623ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 76244e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7625ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76264e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 76274e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 76284e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7629ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76304e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76314e84afc0SStefano Zampini } 76324e84afc0SStefano Zampini ncoo_d += nz; 76334e84afc0SStefano Zampini } 76344e84afc0SStefano Zampini } 76354e84afc0SStefano Zampini } 76364e84afc0SStefano Zampini } 763748a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 763948a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76409566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7641ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76429566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76434e84afc0SStefano Zampini 76444e84afc0SStefano Zampini /* preallocate with COO data */ 76459566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76469566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76484e84afc0SStefano Zampini } 76494e84afc0SStefano Zampini 7650d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7651d71ae5a4SJacob Faibussowitsch { 76524e84afc0SStefano Zampini Mat_Product *product = mat->product; 76534e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76544e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7655abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76564e84afc0SStefano Zampini #else 76574e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76584e84afc0SStefano Zampini #endif 76594e84afc0SStefano Zampini 76604e84afc0SStefano Zampini PetscFunctionBegin; 76614e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76624e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 766348a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 766465e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7665abb89eb1SStefano Zampini switch (product->type) { 7666abb89eb1SStefano Zampini case MATPRODUCT_AB: 7667abb89eb1SStefano Zampini if (product->api_user) { 7668d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76699566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7670d0609cedSBarry Smith PetscOptionsEnd(); 7671abb89eb1SStefano Zampini } else { 7672d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76739566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7674d0609cedSBarry Smith PetscOptionsEnd(); 7675abb89eb1SStefano Zampini } 7676abb89eb1SStefano Zampini break; 7677abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7678abb89eb1SStefano Zampini if (product->api_user) { 7679d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76809566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7681d0609cedSBarry Smith PetscOptionsEnd(); 7682abb89eb1SStefano Zampini } else { 7683d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76849566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7685d0609cedSBarry Smith PetscOptionsEnd(); 7686abb89eb1SStefano Zampini } 7687abb89eb1SStefano Zampini break; 7688abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7689abb89eb1SStefano Zampini if (product->api_user) { 7690d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76919566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7692d0609cedSBarry Smith PetscOptionsEnd(); 7693abb89eb1SStefano Zampini } else { 7694d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76959566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7696d0609cedSBarry Smith PetscOptionsEnd(); 7697abb89eb1SStefano Zampini } 7698abb89eb1SStefano Zampini break; 7699d71ae5a4SJacob Faibussowitsch default: 7700d71ae5a4SJacob Faibussowitsch break; 7701abb89eb1SStefano Zampini } 7702abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7703abb89eb1SStefano Zampini } 77044e84afc0SStefano Zampini #endif 77054e84afc0SStefano Zampini if (match) { 77064e84afc0SStefano Zampini switch (product->type) { 77074e84afc0SStefano Zampini case MATPRODUCT_AB: 77084e84afc0SStefano Zampini case MATPRODUCT_AtB: 7709d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7710d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7711d71ae5a4SJacob Faibussowitsch break; 7712d71ae5a4SJacob Faibussowitsch default: 7713d71ae5a4SJacob Faibussowitsch break; 77144e84afc0SStefano Zampini } 77154e84afc0SStefano Zampini } 77164e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 77179566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 77183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771981824310SBarry Smith } 772098921bdaSJacob Faibussowitsch 772198921bdaSJacob Faibussowitsch /* 772272833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 772372833a62Smarkadams4 772472833a62Smarkadams4 n - the number of block indices in cc[] 772572833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 772672833a62Smarkadams4 */ 7727d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7728d71ae5a4SJacob Faibussowitsch { 772972833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 773072833a62Smarkadams4 const PetscInt *idx; 773172833a62Smarkadams4 773272833a62Smarkadams4 PetscFunctionBegin; 773372833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 773472833a62Smarkadams4 if (nidx) { 773572833a62Smarkadams4 cnt = 0; 773672833a62Smarkadams4 cc[cnt] = idx[0] / bs; 773772833a62Smarkadams4 for (j = 1; j < nidx; j++) { 773872833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 773972833a62Smarkadams4 } 774072833a62Smarkadams4 } 774172833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 774272833a62Smarkadams4 *n = cnt + 1; 77433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 774472833a62Smarkadams4 } 774572833a62Smarkadams4 774672833a62Smarkadams4 /* 774772833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 774872833a62Smarkadams4 774972833a62Smarkadams4 ncollapsed - the number of block indices 775072833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 775172833a62Smarkadams4 */ 7752d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7753d71ae5a4SJacob Faibussowitsch { 775472833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 775572833a62Smarkadams4 775672833a62Smarkadams4 PetscFunctionBegin; 775772833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 775872833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 775972833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 776072833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77619371c9d4SSatish Balay cprevtmp = cprev; 77629371c9d4SSatish Balay cprev = merged; 77639371c9d4SSatish Balay merged = cprevtmp; 776472833a62Smarkadams4 } 776572833a62Smarkadams4 *ncollapsed = nprev; 776672833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 776872833a62Smarkadams4 } 776972833a62Smarkadams4 77702d776b49SBarry Smith /* 777172833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 777272833a62Smarkadams4 777372833a62Smarkadams4 Input Parameter: 777472833a62Smarkadams4 . Amat - matrix 777572833a62Smarkadams4 - symmetrize - make the result symmetric 777672833a62Smarkadams4 + scale - scale with diagonal 777772833a62Smarkadams4 777872833a62Smarkadams4 Output Parameter: 777972833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 778072833a62Smarkadams4 778172833a62Smarkadams4 */ 7782e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7783d71ae5a4SJacob Faibussowitsch { 778472833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 778572833a62Smarkadams4 MPI_Comm comm; 778672833a62Smarkadams4 Mat Gmat; 778772833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 778872833a62Smarkadams4 Mat a, b, c; 778972833a62Smarkadams4 MatType jtype; 779072833a62Smarkadams4 779172833a62Smarkadams4 PetscFunctionBegin; 779272833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 779372833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 779472833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 779572833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 779672833a62Smarkadams4 nloc = (Iend - Istart) / bs; 779772833a62Smarkadams4 779872833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 779972833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 780072833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 780172833a62Smarkadams4 780272833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 780372833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 780472833a62Smarkadams4 implementation */ 780572833a62Smarkadams4 if (bs > 1) { 780672833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 780772833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 780872833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 780972833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 781072833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 781172833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 781272833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 78132cf69117Smarkadams4 MatScalar *aa, val, *AA; 78142cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 78156497c311SBarry Smith 78169371c9d4SSatish Balay if (isseqaij) { 78179371c9d4SSatish Balay a = Amat; 78189371c9d4SSatish Balay b = NULL; 78199371c9d4SSatish Balay } else { 782072833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 78219371c9d4SSatish Balay a = d->A; 78229371c9d4SSatish Balay b = d->B; 782372833a62Smarkadams4 } 782472833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 782532603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 782672833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 78272cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 782859ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 78296497c311SBarry Smith 783059ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 783159ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 783259ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 783359ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 783472833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 783559ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 783659ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 783759ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 783859ee9f9fSPierre Jolivet else { 783959ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 784059ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 784159ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 784272833a62Smarkadams4 } 784359ee9f9fSPierre Jolivet } 784459ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 784559ee9f9fSPierre Jolivet } 784659ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 784772833a62Smarkadams4 if (!ok) { 784872833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 784959ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 785072833a62Smarkadams4 goto old_bs; 785172833a62Smarkadams4 } 785272833a62Smarkadams4 } 785372833a62Smarkadams4 } 785472833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 785572833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 785672833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78572cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 785872833a62Smarkadams4 // diag 785972833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 786072833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 78616497c311SBarry Smith 786272833a62Smarkadams4 ai = aseq->i; 786372833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 786472833a62Smarkadams4 aj = aseq->j + ai[brow]; 78656497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 786672833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 786772833a62Smarkadams4 val = 0; 7868e02fb3cdSMark Adams if (index_size == 0) { 78696497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 787072833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 78716497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 787272833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 787372833a62Smarkadams4 } 787472833a62Smarkadams4 } 7875e02fb3cdSMark Adams } else { // use (index,index) value if provided 78766497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78776497c311SBarry Smith PetscInt ii = index[iii]; 7878e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 78796497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 78806497c311SBarry Smith PetscInt jj = index[jjj]; 7881cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7882e02fb3cdSMark Adams } 7883e02fb3cdSMark Adams } 7884e02fb3cdSMark Adams } 788559ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 788672833a62Smarkadams4 AA[k / bs] = val; 788772833a62Smarkadams4 } 788872833a62Smarkadams4 grow = Istart / bs + brow / bs; 788966521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 789072833a62Smarkadams4 } 789172833a62Smarkadams4 // off-diag 789272833a62Smarkadams4 if (ismpiaij) { 789372833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 789472833a62Smarkadams4 const PetscScalar *vals; 789572833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 78966497c311SBarry Smith 789772833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 789872833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 789972833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 79006497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 790159ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 790272833a62Smarkadams4 AA[k / bs] = 0; 790372833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 790472833a62Smarkadams4 } 790572833a62Smarkadams4 nc = ncols / bs; 790672833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7907e02fb3cdSMark Adams if (index_size == 0) { 79086497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 790972833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79106497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79116497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 791259ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 791372833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 791472833a62Smarkadams4 } 791572833a62Smarkadams4 } 791672833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 791772833a62Smarkadams4 } 7918e02fb3cdSMark Adams } else { // use (index,index) value if provided 79196497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 79206497c311SBarry Smith PetscInt ii = index[iii]; 7921e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79226497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79236497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 79246497c311SBarry Smith PetscInt jj = index[jjj]; 7925e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7926e02fb3cdSMark Adams } 7927e02fb3cdSMark Adams } 7928e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7929e02fb3cdSMark Adams } 7930e02fb3cdSMark Adams } 793172833a62Smarkadams4 grow = Istart / bs + brow / bs; 793266521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 793372833a62Smarkadams4 } 793472833a62Smarkadams4 } 793572833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 793672833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79372cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 793872833a62Smarkadams4 } else { 793972833a62Smarkadams4 const PetscScalar *vals; 794072833a62Smarkadams4 const PetscInt *idx; 794172833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 794272833a62Smarkadams4 old_bs: 794372833a62Smarkadams4 /* 794472833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 794572833a62Smarkadams4 */ 794672833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 794732603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 794872833a62Smarkadams4 if (isseqaij) { 794972833a62Smarkadams4 PetscInt max_d_nnz; 79506497c311SBarry Smith 795172833a62Smarkadams4 /* 795272833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 795372833a62Smarkadams4 */ 795472833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 795572833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 795672833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 795748a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 795872833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 795972833a62Smarkadams4 } else if (ismpiaij) { 796072833a62Smarkadams4 Mat Daij, Oaij; 796172833a62Smarkadams4 const PetscInt *garray; 796272833a62Smarkadams4 PetscInt max_d_nnz; 79636497c311SBarry Smith 796472833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 796572833a62Smarkadams4 /* 796672833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 796772833a62Smarkadams4 */ 796872833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 796972833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 797072833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 797148a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 797272833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 797372833a62Smarkadams4 /* 797472833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 797572833a62Smarkadams4 */ 797672833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 797772833a62Smarkadams4 o_nnz[jj] = 0; 797872833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 797972833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 798072833a62Smarkadams4 o_nnz[jj] += ncols; 798172833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 798272833a62Smarkadams4 } 798372833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 798472833a62Smarkadams4 } 798572833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 798672833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 798772833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 798872833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 798972833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 799072833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 799172833a62Smarkadams4 PetscInt dest_row = Ii / bs; 79926497c311SBarry Smith 799372833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 799472833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 799572833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 799672833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 79976497c311SBarry Smith 799872833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 799972833a62Smarkadams4 } 800072833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 800172833a62Smarkadams4 } 800272833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 800372833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 800472833a62Smarkadams4 } 800572833a62Smarkadams4 } else { 80062d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 80072d776b49SBarry Smith else { 80082d776b49SBarry Smith Gmat = Amat; 80092d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 80102d776b49SBarry Smith } 80119371c9d4SSatish Balay if (isseqaij) { 80129371c9d4SSatish Balay a = Gmat; 80139371c9d4SSatish Balay b = NULL; 80149371c9d4SSatish Balay } else { 801572833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 80169371c9d4SSatish Balay a = d->A; 80179371c9d4SSatish Balay b = d->B; 801872833a62Smarkadams4 } 80192d776b49SBarry Smith if (filter >= 0 || scale) { 80202d776b49SBarry Smith /* take absolute value of each entry */ 802172833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 802272833a62Smarkadams4 MatInfo info; 802372833a62Smarkadams4 PetscScalar *avals; 80246497c311SBarry Smith 802572833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 802672833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 802772833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 802872833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 802972833a62Smarkadams4 } 803072833a62Smarkadams4 } 80312d776b49SBarry Smith } 803272833a62Smarkadams4 if (symmetrize) { 8033b94d7dedSBarry Smith PetscBool isset, issym; 80346497c311SBarry Smith 8035b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8036b94d7dedSBarry Smith if (!isset || !issym) { 803772833a62Smarkadams4 Mat matTrans; 80386497c311SBarry Smith 803972833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80401fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 804172833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 804272833a62Smarkadams4 } 804372833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80442d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 804572833a62Smarkadams4 if (scale) { 804672833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 804772833a62Smarkadams4 Vec diag; 80486497c311SBarry Smith 804972833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 805072833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 805172833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 805272833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 805372833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 805472833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 805572833a62Smarkadams4 } 805672833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80572d776b49SBarry Smith if (filter >= 0) { 80582ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80592ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80602d776b49SBarry Smith } 806172833a62Smarkadams4 *a_Gmat = Gmat; 80623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 806372833a62Smarkadams4 } 806472833a62Smarkadams4 806572833a62Smarkadams4 /* 806698921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 806798921bdaSJacob Faibussowitsch */ 806898921bdaSJacob Faibussowitsch 806998921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80709566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80719566063dSJacob Faibussowitsch #undef PetscCall 80729371c9d4SSatish Balay #define PetscCall(...) \ 80739371c9d4SSatish Balay do { \ 80745f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 807598921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 807698921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 807798921bdaSJacob Faibussowitsch return; \ 807898921bdaSJacob Faibussowitsch } \ 807998921bdaSJacob Faibussowitsch } while (0) 808098921bdaSJacob Faibussowitsch 808198921bdaSJacob Faibussowitsch #undef SETERRQ 80829371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80839371c9d4SSatish Balay do { \ 808498921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 808598921bdaSJacob Faibussowitsch return; \ 808698921bdaSJacob Faibussowitsch } while (0) 808798921bdaSJacob Faibussowitsch 808898921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 808998921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 809098921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 809198921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 809298921bdaSJacob Faibussowitsch #else 809398921bdaSJacob Faibussowitsch #endif 8094d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8095d71ae5a4SJacob Faibussowitsch { 809698921bdaSJacob Faibussowitsch Mat mat = *mmat; 809798921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 809898921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 809998921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 810098921bdaSJacob Faibussowitsch PetscScalar value; 810198921bdaSJacob Faibussowitsch 810298921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 810398921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 81045f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 810598921bdaSJacob Faibussowitsch { 810698921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 810798921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 810898921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 810998921bdaSJacob Faibussowitsch 811098921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 811198921bdaSJacob Faibussowitsch Mat A = aij->A; 811298921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 811398921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 811498921bdaSJacob Faibussowitsch MatScalar *aa; 8115f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 811698921bdaSJacob Faibussowitsch Mat B = aij->B; 811798921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 811898921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 811998921bdaSJacob Faibussowitsch MatScalar *ba; 812098921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 812198921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 812298921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 812398921bdaSJacob Faibussowitsch 812498921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 812598921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 812698921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 812798921bdaSJacob Faibussowitsch 812898921bdaSJacob Faibussowitsch PetscFunctionBegin; 81299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 813198921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 813298921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81336bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 813498921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 813598921bdaSJacob Faibussowitsch row = im[i] - rstart; 813698921bdaSJacob Faibussowitsch lastcol1 = -1; 813798921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 813898921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 813998921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 814098921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 814198921bdaSJacob Faibussowitsch low1 = 0; 814298921bdaSJacob Faibussowitsch high1 = nrow1; 814398921bdaSJacob Faibussowitsch lastcol2 = -1; 814498921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 814598921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 814698921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 814798921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 814898921bdaSJacob Faibussowitsch low2 = 0; 814998921bdaSJacob Faibussowitsch high2 = nrow2; 815098921bdaSJacob Faibussowitsch 815198921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 815298921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 815398921bdaSJacob Faibussowitsch else value = v[i + j * m]; 815498921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 815598921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 815698921bdaSJacob Faibussowitsch col = in[j] - cstart; 815798921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 815898921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 815998921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 816063a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 816198921bdaSJacob Faibussowitsch } else { 816298921bdaSJacob Faibussowitsch if (mat->was_assembled) { 816348a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 816498921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8165eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 816698921bdaSJacob Faibussowitsch col--; 816798921bdaSJacob Faibussowitsch #else 816898921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 816998921bdaSJacob Faibussowitsch #endif 8170f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 8171eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 817298921bdaSJacob Faibussowitsch col = in[j]; 817398921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 817498921bdaSJacob Faibussowitsch B = aij->B; 817598921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81769371c9d4SSatish Balay bimax = b->imax; 81779371c9d4SSatish Balay bi = b->i; 81789371c9d4SSatish Balay bilen = b->ilen; 81799371c9d4SSatish Balay bj = b->j; 818098921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 818198921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 818298921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 818398921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 818498921bdaSJacob Faibussowitsch low2 = 0; 818598921bdaSJacob Faibussowitsch high2 = nrow2; 818698921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 818798921bdaSJacob Faibussowitsch ba = b->a; 818898921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 818998921bdaSJacob Faibussowitsch } 819098921bdaSJacob Faibussowitsch } else col = in[j]; 819198921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 819298921bdaSJacob Faibussowitsch } 819398921bdaSJacob Faibussowitsch } 819498921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 819598921bdaSJacob Faibussowitsch if (roworiented) { 81969566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 819798921bdaSJacob Faibussowitsch } else { 81989566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 819998921bdaSJacob Faibussowitsch } 820098921bdaSJacob Faibussowitsch } 820198921bdaSJacob Faibussowitsch } 82029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 82039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 820498921bdaSJacob Faibussowitsch } 820598921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 820698921bdaSJacob Faibussowitsch } 820772833a62Smarkadams4 820898921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 820998921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 821098921bdaSJacob Faibussowitsch * original definitions */ 82119566063dSJacob Faibussowitsch #undef PetscCall 821298921bdaSJacob Faibussowitsch #undef SETERRQ 8213