1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 1026cec326SBarry Smith { 1126cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1226cec326SBarry Smith 1326cec326SBarry Smith PetscFunctionBegin; 1426cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1526cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1626cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 1726cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 1826cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2026cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2126cec326SBarry Smith #else 2226cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 2326cec326SBarry Smith #endif 2426cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 2526cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 2626cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 2726cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 2826cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 2926cec326SBarry Smith 3026cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3126cec326SBarry Smith 3226cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 3326cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 3426cec326SBarry Smith 3526cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 4126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 4326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 4726cec326SBarry Smith #endif 4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 4926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 5026cec326SBarry Smith #endif 5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 5226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 5326cec326SBarry Smith #endif 5426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 5626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 5726cec326SBarry Smith #endif 5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 5926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 6026cec326SBarry Smith #endif 6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 6226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 6326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 6426cec326SBarry Smith #endif 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 6926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 7326cec326SBarry Smith #endif 7426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 7626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 7726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 7926cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 8026cec326SBarry Smith } 8126cec326SBarry Smith 8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 8326cec326SBarry Smith #define TYPE AIJ 8426cec326SBarry Smith #define TYPE_AIJ 8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 8626cec326SBarry Smith #undef TYPE 8726cec326SBarry Smith #undef TYPE_AIJ 8826cec326SBarry Smith 89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 90d71ae5a4SJacob Faibussowitsch { 918a9c020eSBarry Smith Mat B; 928a9c020eSBarry Smith 938a9c020eSBarry Smith PetscFunctionBegin; 948a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 958a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 968a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 97501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 998a9c020eSBarry Smith } 1008a9c020eSBarry Smith 101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 102d71ae5a4SJacob Faibussowitsch { 1038a9c020eSBarry Smith Mat B; 1048a9c020eSBarry Smith 1058a9c020eSBarry Smith PetscFunctionBegin; 1068a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1078a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 108501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1108a9c020eSBarry Smith } 1118a9c020eSBarry Smith 11201bebe75SBarry Smith /*MC 11301bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 11401bebe75SBarry Smith 11511a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 11611a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 11711a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 11801bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 11901bebe75SBarry Smith the above preallocation routines for simplicity. 12001bebe75SBarry Smith 12127430b45SBarry Smith Options Database Key: 12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 12301bebe75SBarry Smith 12411a5261eSBarry Smith Developer Note: 1252ef1f0ffSBarry Smith Level: beginner 1262ef1f0ffSBarry Smith 12711a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 12801bebe75SBarry Smith enough exist. 12901bebe75SBarry Smith 1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 13101bebe75SBarry Smith M*/ 13201bebe75SBarry Smith 13301bebe75SBarry Smith /*MC 13401bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 13501bebe75SBarry Smith 13611a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 13711a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 13811a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 13901bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14001bebe75SBarry Smith the above preallocation routines for simplicity. 14101bebe75SBarry Smith 14227430b45SBarry Smith Options Database Key: 14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 14401bebe75SBarry Smith 14501bebe75SBarry Smith Level: beginner 14601bebe75SBarry Smith 1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 14801bebe75SBarry Smith M*/ 14901bebe75SBarry Smith 150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 151d71ae5a4SJacob Faibussowitsch { 152f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 153f74ef234SStefano Zampini 154f74ef234SStefano Zampini PetscFunctionBegin; 155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 156b470e4b4SRichard Tran Mills A->boundtocpu = flg; 157f74ef234SStefano Zampini #endif 1581baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1591baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1603120d049SRichard Tran Mills 1613120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1623120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1633120d049SRichard Tran Mills * to differ from the parent matrix. */ 1641baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1651baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 167f74ef234SStefano Zampini } 168f74ef234SStefano Zampini 169ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 170d71ae5a4SJacob Faibussowitsch { 17126bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 17226bda2c4Sstefano_zampini 17326bda2c4Sstefano_zampini PetscFunctionBegin; 17446533700Sstefano_zampini if (mat->A) { 1759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 17746533700Sstefano_zampini } 1783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17926bda2c4Sstefano_zampini } 18026bda2c4Sstefano_zampini 181ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 182d71ae5a4SJacob Faibussowitsch { 18327d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 18427d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 18527d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 18627d4218bSShri Abhyankar const PetscInt *ia, *ib; 187ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 18827d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 18927d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 19027d4218bSShri Abhyankar 19127d4218bSShri Abhyankar PetscFunctionBegin; 192f4259b30SLisandro Dalcin *keptrows = NULL; 193ce496241SStefano Zampini 19427d4218bSShri Abhyankar ia = a->i; 19527d4218bSShri Abhyankar ib = b->i; 1969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 1979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 19827d4218bSShri Abhyankar for (i = 0; i < m; i++) { 19927d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 20027d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 20127d4218bSShri Abhyankar if (!na && !nb) { 20227d4218bSShri Abhyankar cnt++; 20327d4218bSShri Abhyankar goto ok1; 20427d4218bSShri Abhyankar } 205ce496241SStefano Zampini aa = aav + ia[i]; 20627d4218bSShri Abhyankar for (j = 0; j < na; j++) { 20727d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 20827d4218bSShri Abhyankar } 2098e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 21027d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 21127d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 21227d4218bSShri Abhyankar } 21327d4218bSShri Abhyankar cnt++; 21427d4218bSShri Abhyankar ok1:; 21527d4218bSShri Abhyankar } 2161c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 217ce496241SStefano Zampini if (!n0rows) { 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 221ce496241SStefano Zampini } 2229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 22327d4218bSShri Abhyankar cnt = 0; 22427d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22527d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22627d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22727d4218bSShri Abhyankar if (!na && !nb) continue; 228ce496241SStefano Zampini aa = aav + ia[i]; 22927d4218bSShri Abhyankar for (j = 0; j < na; j++) { 23027d4218bSShri Abhyankar if (aa[j] != 0.0) { 23127d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23227d4218bSShri Abhyankar goto ok2; 23327d4218bSShri Abhyankar } 23427d4218bSShri Abhyankar } 2358e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23627d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23727d4218bSShri Abhyankar if (bb[j] != 0.0) { 23827d4218bSShri Abhyankar rows[cnt++] = rstart + i; 23927d4218bSShri Abhyankar goto ok2; 24027d4218bSShri Abhyankar } 24127d4218bSShri Abhyankar } 24227d4218bSShri Abhyankar ok2:; 24327d4218bSShri Abhyankar } 2449566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24827d4218bSShri Abhyankar } 24927d4218bSShri Abhyankar 250ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 251d71ae5a4SJacob Faibussowitsch { 25299e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 25394342113SStefano Zampini PetscBool cong; 25499e65526SBarry Smith 25599e65526SBarry Smith PetscFunctionBegin; 2569566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 25794342113SStefano Zampini if (Y->assembled && cong) { 2589566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 25999e65526SBarry Smith } else { 2609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 26199e65526SBarry Smith } 2623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26399e65526SBarry Smith } 26499e65526SBarry Smith 265ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 266d71ae5a4SJacob Faibussowitsch { 267f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 268f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 269f1f41ecbSJed Brown 270f1f41ecbSJed Brown PetscFunctionBegin; 2710298fd71SBarry Smith *zrows = NULL; 2729566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2739566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 274f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2759566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277f1f41ecbSJed Brown } 278f1f41ecbSJed Brown 279ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 280d71ae5a4SJacob Faibussowitsch { 2810716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 282a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 2830716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 2840716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 2850716a85fSBarry Smith PetscReal *work; 286ce496241SStefano Zampini const PetscScalar *dummy; 2870716a85fSBarry Smith 2880716a85fSBarry Smith PetscFunctionBegin; 2899566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 2909566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 2919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 2929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 2939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 2949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 295857cbf51SRichard Tran Mills if (type == NORM_2) { 296ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 297ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 298857cbf51SRichard Tran Mills } else if (type == NORM_1) { 299ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 300ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 301857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 302ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 303ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 304857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 305ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 306ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 307857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 308ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 309ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 310857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 311857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 3121c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3130716a85fSBarry Smith } else { 3141c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3150716a85fSBarry Smith } 3169566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 319857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 320a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3210716a85fSBarry Smith } 3223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3230716a85fSBarry Smith } 3240716a85fSBarry Smith 325ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 326d71ae5a4SJacob Faibussowitsch { 327e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 328e52d2c62SBarry Smith IS sis, gis; 329e52d2c62SBarry Smith const PetscInt *isis, *igis; 330e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 331e52d2c62SBarry Smith 332e52d2c62SBarry Smith PetscFunctionBegin; 3339566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3349566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3359566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3369566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3379566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 339e52d2c62SBarry Smith 3409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3419566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3429566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 343e52d2c62SBarry Smith n = ngis + nsis; 3449566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3459566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 346e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3479566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 348e52d2c62SBarry Smith 3499566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 354e52d2c62SBarry Smith } 355e52d2c62SBarry Smith 356dd6ea824SBarry Smith /* 3570f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3589e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3590f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3600f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 36172fa4726SStefano Zampini has an order N integer array but is fast to access. 3629e25ed09SBarry Smith */ 363d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 364d71ae5a4SJacob Faibussowitsch { 36544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 366d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 367dbb450caSBarry Smith 3683a40ed3dSBarry Smith PetscFunctionBegin; 36908401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 370aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 371eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 372c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 373b1fc9764SSatish Balay #else 3749566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 375905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 376b1fc9764SSatish Balay #endif 3773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3789e25ed09SBarry Smith } 3799e25ed09SBarry Smith 380d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 381a8f51744SPierre Jolivet do { \ 382db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 383db4deed7SKarl Rupp else high1 = nrow1; \ 384fd3458f5SBarry Smith lastcol1 = col; \ 385fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 386fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 387fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 388fd3458f5SBarry Smith else low1 = t; \ 389ba4e3ef2SSatish Balay } \ 390fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 391fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 392fd3458f5SBarry Smith if (rp1[_i] == col) { \ 3930c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 3940c0d7e18SFande Kong ap1[_i] += value; \ 3950c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 3960c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 3979371c9d4SSatish Balay } else ap1[_i] = value; \ 39830770e4dSSatish Balay goto a_noinsert; \ 3990520107fSSatish Balay } \ 4000520107fSSatish Balay } \ 4019371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4029371c9d4SSatish Balay low1 = 0; \ 4039371c9d4SSatish Balay high1 = nrow1; \ 4049371c9d4SSatish Balay goto a_noinsert; \ 4059371c9d4SSatish Balay } \ 4069371c9d4SSatish Balay if (nonew == 1) { \ 4079371c9d4SSatish Balay low1 = 0; \ 4089371c9d4SSatish Balay high1 = nrow1; \ 4099371c9d4SSatish Balay goto a_noinsert; \ 4109371c9d4SSatish Balay } \ 41108401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 412fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4139371c9d4SSatish Balay N = nrow1++ - 1; \ 4149371c9d4SSatish Balay a->nz++; \ 4159371c9d4SSatish Balay high1++; \ 4160520107fSSatish Balay /* shift up all the later entries in this row */ \ 4179566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4189566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 419fd3458f5SBarry Smith rp1[_i] = col; \ 420fd3458f5SBarry Smith ap1[_i] = value; \ 42130770e4dSSatish Balay a_noinsert:; \ 422fd3458f5SBarry Smith ailen[row] = nrow1; \ 423a8f51744SPierre Jolivet } while (0) 4240a198c4cSBarry Smith 425d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 426a8f51744SPierre Jolivet do { \ 427db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 428db4deed7SKarl Rupp else high2 = nrow2; \ 429fd3458f5SBarry Smith lastcol2 = col; \ 430fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 431fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 432fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 433fd3458f5SBarry Smith else low2 = t; \ 434ba4e3ef2SSatish Balay } \ 435fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 436fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 437fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4380c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4390c0d7e18SFande Kong ap2[_i] += value; \ 4400c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4419371c9d4SSatish Balay } else ap2[_i] = value; \ 44230770e4dSSatish Balay goto b_noinsert; \ 44330770e4dSSatish Balay } \ 44430770e4dSSatish Balay } \ 4459371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4469371c9d4SSatish Balay low2 = 0; \ 4479371c9d4SSatish Balay high2 = nrow2; \ 4489371c9d4SSatish Balay goto b_noinsert; \ 4499371c9d4SSatish Balay } \ 4509371c9d4SSatish Balay if (nonew == 1) { \ 4519371c9d4SSatish Balay low2 = 0; \ 4529371c9d4SSatish Balay high2 = nrow2; \ 4539371c9d4SSatish Balay goto b_noinsert; \ 4549371c9d4SSatish Balay } \ 45508401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 456fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4579371c9d4SSatish Balay N = nrow2++ - 1; \ 4589371c9d4SSatish Balay b->nz++; \ 4599371c9d4SSatish Balay high2++; \ 46030770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4619566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4629566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 463fd3458f5SBarry Smith rp2[_i] = col; \ 464fd3458f5SBarry Smith ap2[_i] = value; \ 46530770e4dSSatish Balay b_noinsert:; \ 466fd3458f5SBarry Smith bilen[row] = nrow2; \ 467a8f51744SPierre Jolivet } while (0) 46830770e4dSSatish Balay 469ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 470d71ae5a4SJacob Faibussowitsch { 4712fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4722fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4732fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 474fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4752fd7e33dSBarry Smith 4762fd7e33dSBarry Smith PetscFunctionBegin; 4772fd7e33dSBarry Smith /* code only works for square matrices A */ 4782fd7e33dSBarry Smith 4792fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 4809566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 4812fd7e33dSBarry Smith row = row - diag; 4822fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 4832fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 4842fd7e33dSBarry Smith } 485fff043a9SJunchao Zhang if (l) { 4869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 4879566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 4889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 489fff043a9SJunchao Zhang } 4902fd7e33dSBarry Smith 4912fd7e33dSBarry Smith /* diagonal part */ 492fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 4939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 4949566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row]))); 4959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 496fff043a9SJunchao Zhang } 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith /* right of diagonal part */ 499fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5019566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 503fff043a9SJunchao Zhang } 5043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5052fd7e33dSBarry Smith } 5062fd7e33dSBarry Smith 507d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 508d71ae5a4SJacob Faibussowitsch { 50944a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 510071fcb05SBarry Smith PetscScalar value = 0.0; 511d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 512d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 513ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5148a729477SBarry Smith 5150520107fSSatish Balay /* Some Variables required in the macro */ 5164ee7247eSSatish Balay Mat A = aij->A; 5174ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 51857809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 519ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 52030770e4dSSatish Balay Mat B = aij->B; 52130770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 522d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 523ce496241SStefano Zampini MatScalar *aa, *ba; 524fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5258d76821aSHong Zhang PetscInt nonew; 526a77337e4SBarry Smith MatScalar *ap1, *ap2; 5274ee7247eSSatish Balay 5283a40ed3dSBarry Smith PetscFunctionBegin; 5299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5318a729477SBarry Smith for (i = 0; i < m; i++) { 5325ef9f2a5SBarry Smith if (im[i] < 0) continue; 53308401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5344b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5354b0e389bSBarry Smith row = im[i] - rstart; 536fd3458f5SBarry Smith lastcol1 = -1; 5378e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5388e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 539fd3458f5SBarry Smith rmax1 = aimax[row]; 540fd3458f5SBarry Smith nrow1 = ailen[row]; 541fd3458f5SBarry Smith low1 = 0; 542fd3458f5SBarry Smith high1 = nrow1; 543fd3458f5SBarry Smith lastcol2 = -1; 5448e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5458e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 546fd3458f5SBarry Smith rmax2 = bimax[row]; 547d498b1e9SBarry Smith nrow2 = bilen[row]; 548fd3458f5SBarry Smith low2 = 0; 549fd3458f5SBarry Smith high2 = nrow2; 550fd3458f5SBarry Smith 5511eb62cbbSBarry Smith for (j = 0; j < n; j++) { 552071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 553c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 554fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 555fd3458f5SBarry Smith col = in[j] - cstart; 5568d76821aSHong Zhang nonew = a->nonew; 557d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 558f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 559f7d195e4SLawrence Mitchell continue; 560f7d195e4SLawrence Mitchell } else { 561f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 562227d817aSBarry Smith if (mat->was_assembled) { 56348a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 564aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 565eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 566fa46199cSSatish Balay col--; 567b1fc9764SSatish Balay #else 568905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 569b1fc9764SSatish Balay #endif 570f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 5719566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); /* Change aij->B from reduced/local format to expanded/global format */ 5724b0e389bSBarry Smith col = in[j]; 5739bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 574f9508a3cSSatish Balay B = aij->B; 575f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5769371c9d4SSatish Balay bimax = b->imax; 5779371c9d4SSatish Balay bi = b->i; 5789371c9d4SSatish Balay bilen = b->ilen; 5799371c9d4SSatish Balay bj = b->j; 5809371c9d4SSatish Balay ba = b->a; 581cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 582cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 583d498b1e9SBarry Smith rmax2 = bimax[row]; 584d498b1e9SBarry Smith nrow2 = bilen[row]; 585d498b1e9SBarry Smith low2 = 0; 586d498b1e9SBarry Smith high2 = nrow2; 587d0f46423SBarry Smith bm = aij->B->rmap->n; 588f9508a3cSSatish Balay ba = b->a; 589d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 590f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 5919566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 59298921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 5930587a0fcSBarry Smith } 594c48de900SBarry Smith } else col = in[j]; 5958d76821aSHong Zhang nonew = b->nonew; 596d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 5971eb62cbbSBarry Smith } 5981eb62cbbSBarry Smith } 5995ef9f2a5SBarry Smith } else { 60028b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 60190f02eecSBarry Smith if (!aij->donotstash) { 6025080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 603d36fbae8SSatish Balay if (roworiented) { 6048e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 605d36fbae8SSatish Balay } else { 6068e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6074b0e389bSBarry Smith } 6081eb62cbbSBarry Smith } 6098a729477SBarry Smith } 61090f02eecSBarry Smith } 6115519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6129566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6148a729477SBarry Smith } 6158a729477SBarry Smith 6162b08fdbeSandi selinger /* 617904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6182b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 619904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6202b08fdbeSandi selinger */ 621d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 622d71ae5a4SJacob Faibussowitsch { 623904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 624904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6254cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 626904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 627904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 628904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 629904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 630904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6316dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 632904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 633904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 634904d1e70Sandi selinger 635904d1e70Sandi selinger PetscFunctionBegin; 636904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 637904d1e70Sandi selinger for (j = 0; j < am; j++) { 638904d1e70Sandi selinger dnz = onz = 0; 639904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6406dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 641904d1e70Sandi selinger /* If column is in the diagonal */ 642904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 643904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 644904d1e70Sandi selinger dnz++; 645904d1e70Sandi selinger } else { /* off-diagonal entries */ 646904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 647904d1e70Sandi selinger onz++; 648904d1e70Sandi selinger } 649904d1e70Sandi selinger } 650904d1e70Sandi selinger ailen[j] = dnz; 651904d1e70Sandi selinger bilen[j] = onz; 652904d1e70Sandi selinger } 6533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 654904d1e70Sandi selinger } 655904d1e70Sandi selinger 656904d1e70Sandi selinger /* 657904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 658904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6591de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6601de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6611de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 662904d1e70Sandi selinger */ 663d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 664d71ae5a4SJacob Faibussowitsch { 6653a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6663a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6674cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 668f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6693a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6703a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6713a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6723a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6733a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6746dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6751de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 676904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 677904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6783a063d27Sandi selinger 6793a063d27Sandi selinger PetscFunctionBegin; 6803a063d27Sandi selinger /* Iterate over all rows of the matrix */ 6813a063d27Sandi selinger for (j = 0; j < am; j++) { 682904d1e70Sandi selinger dnz_row = onz_row = 0; 683904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 684904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 685e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 686e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 687ae8e66a0Sandi selinger /* If column is in the diagonal */ 6883a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 689904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 690904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 691904d1e70Sandi selinger dnz_row++; 692ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 693904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 694904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 695904d1e70Sandi selinger onz_row++; 6963a063d27Sandi selinger } 6973a063d27Sandi selinger } 698904d1e70Sandi selinger ailen[j] = dnz_row; 699904d1e70Sandi selinger bilen[j] = onz_row; 7003a063d27Sandi selinger } 7013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7023a063d27Sandi selinger } 7033a063d27Sandi selinger 704ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 705d71ae5a4SJacob Faibussowitsch { 706b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 707d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 708d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 709b49de8d1SLois Curfman McInnes 7103a40ed3dSBarry Smith PetscFunctionBegin; 711b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 71254c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 71354c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 71485835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 715b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 716b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 71754c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 71854c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 719b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 720b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7219566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 722fa852ad4SSatish Balay } else { 72348a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 724aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 725eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 726fa46199cSSatish Balay col--; 727b1fc9764SSatish Balay #else 728905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 729b1fc9764SSatish Balay #endif 730e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 73148a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 732b49de8d1SLois Curfman McInnes } 733b49de8d1SLois Curfman McInnes } 734b49de8d1SLois Curfman McInnes } 7353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 736b49de8d1SLois Curfman McInnes } 737bc5ccf88SSatish Balay 738ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 739d71ae5a4SJacob Faibussowitsch { 740bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 741b1d57f15SBarry Smith PetscInt nstash, reallocs; 742bc5ccf88SSatish Balay 743bc5ccf88SSatish Balay PetscFunctionBegin; 7443ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 745bc5ccf88SSatish Balay 7469566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7479566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7489566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 750bc5ccf88SSatish Balay } 751bc5ccf88SSatish Balay 752d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 753d71ae5a4SJacob Faibussowitsch { 754bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 755b1d57f15SBarry Smith PetscMPIInt n; 756b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 757e44c0bd4SBarry Smith PetscInt *row, *col; 758ace3abfcSBarry Smith PetscBool other_disassembled; 75987828ca2SBarry Smith PetscScalar *val; 760bc5ccf88SSatish Balay 76191c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7626e111a19SKarl Rupp 763bc5ccf88SSatish Balay PetscFunctionBegin; 7644cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 765a2d1c673SSatish Balay while (1) { 7669566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 767a2d1c673SSatish Balay if (!flg) break; 768a2d1c673SSatish Balay 769bc5ccf88SSatish Balay for (i = 0; i < n;) { 770bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7712205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7722205254eSKarl Rupp if (row[j] != rstart) break; 7732205254eSKarl Rupp } 774bc5ccf88SSatish Balay if (j < n) ncols = j - i; 775bc5ccf88SSatish Balay else ncols = n - i; 776bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7779566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 778bc5ccf88SSatish Balay i = j; 779bc5ccf88SSatish Balay } 780bc5ccf88SSatish Balay } 7819566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 782bc5ccf88SSatish Balay } 7838c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 784c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 7859ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 7869ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 7879566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 7889566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 7899ecce9b1SRichard Tran Mills } 790e2cf4d64SStefano Zampini #endif 7919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 7929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 793bc5ccf88SSatish Balay 794bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 795071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 796bc5ccf88SSatish Balay /* 797bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 798bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 799bc5ccf88SSatish Balay */ 800bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 8015f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 80235cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 8039566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 804ad59fb31SSatish Balay } 805ad59fb31SSatish Balay } 80648a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8079566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8088c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 809c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 810e2cf4d64SStefano Zampini #endif 8119566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8129566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 813bc5ccf88SSatish Balay 8149566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8152205254eSKarl Rupp 816f4259b30SLisandro Dalcin aij->rowvalues = NULL; 817a30b2313SHong Zhang 8189566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 819e56f5c9eSBarry Smith 8204f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 821f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 822e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 8231c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 824e56f5c9eSBarry Smith } 8258c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 826c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 827e2cf4d64SStefano Zampini #endif 8283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 829bc5ccf88SSatish Balay } 830bc5ccf88SSatish Balay 831ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 832d71ae5a4SJacob Faibussowitsch { 83344a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8343a40ed3dSBarry Smith 8353a40ed3dSBarry Smith PetscFunctionBegin; 8369566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8379566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8391eb62cbbSBarry Smith } 8401eb62cbbSBarry Smith 841ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 842d71ae5a4SJacob Faibussowitsch { 8431b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8441b1dd7adSMatthew G. Knepley PetscInt *lrows; 8456e520ac8SStefano Zampini PetscInt r, len; 8469939a2d1SBarry Smith PetscBool cong; 8471eb62cbbSBarry Smith 8483a40ed3dSBarry Smith PetscFunctionBegin; 8496e520ac8SStefano Zampini /* get locally owned rows */ 8509566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8519566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 852dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 85397b48c8fSBarry Smith if (x && b) { 8541b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8551b1dd7adSMatthew G. Knepley PetscScalar *bb; 8561b1dd7adSMatthew G. Knepley 85728b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8589566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8599566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8601b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8619566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8629566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 86397b48c8fSBarry Smith } 864a92ad425SStefano Zampini 865a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8669566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8679566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 868a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 869a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 870a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 871a92ad425SStefano Zampini PetscInt nnwA, nnwB; 872a92ad425SStefano Zampini PetscBool nnzA, nnzB; 873a92ad425SStefano Zampini 874a92ad425SStefano Zampini nnwA = aijA->nonew; 875a92ad425SStefano Zampini nnwB = aijB->nonew; 876a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 877a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 878a92ad425SStefano Zampini if (!nnzA) { 8799566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 880a92ad425SStefano Zampini aijA->nonew = 0; 881a92ad425SStefano Zampini } 882a92ad425SStefano Zampini if (!nnzB) { 8839566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 884a92ad425SStefano Zampini aijB->nonew = 0; 885a92ad425SStefano Zampini } 886a92ad425SStefano Zampini /* Must zero here before the next loop */ 8879566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8891b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 8901b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 891a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 8929566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 893e2d53e46SBarry Smith } 894a92ad425SStefano Zampini aijA->nonew = nnwA; 895a92ad425SStefano Zampini aijB->nonew = nnwB; 8966eb55b6aSBarry Smith } else { 8979566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 8989566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 8996eb55b6aSBarry Smith } 9009566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9019566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9029566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9034f9cfa9eSBarry Smith 9049939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 905f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9069939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 9079939a2d1SBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9089939a2d1SBarry Smith } 9093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9101eb62cbbSBarry Smith } 9111eb62cbbSBarry Smith 912ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 913d71ae5a4SJacob Faibussowitsch { 9149c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9155ba17502SJed Brown PetscMPIInt n = A->rmap->n; 916131c27b5Sprj- PetscInt i, j, r, m, len = 0; 91754bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 918131c27b5Sprj- PetscMPIInt p = 0; 91954bd4135SMatthew G. Knepley PetscSFNode *rrows; 92054bd4135SMatthew G. Knepley PetscSF sf; 9219c7c4993SBarry Smith const PetscScalar *xx; 922fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 923564f14d6SBarry Smith Vec xmask, lmask; 924564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 925564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 926564f14d6SBarry Smith PetscScalar *aa; 9279c7c4993SBarry Smith 9289c7c4993SBarry Smith PetscFunctionBegin; 92954bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 93154bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 93354bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 93454bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 935aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9365ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9379566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9385ba17502SJed Brown } 93954bd4135SMatthew G. Knepley rrows[r].rank = p; 94054bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9419c7c4993SBarry Smith } 9429566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9439566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 94454bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9459566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9469566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9479566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 94854bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9499371c9d4SSatish Balay for (r = 0; r < n; ++r) 9509371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 951564f14d6SBarry Smith /* zero diagonal part of matrix */ 9529566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9534cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9549566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9559566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9569566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 95754bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9589566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9599566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9609566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 962a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 963a92ad425SStefano Zampini PetscBool cong; 964a92ad425SStefano Zampini 9659566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 96628b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9679566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9689566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9699566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9709566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 971377aa5a1SBarry Smith } 9729566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9734cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 975564f14d6SBarry Smith ii = aij->i; 9768e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 977564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 978564f14d6SBarry Smith if (aij->compressedrow.use) { 979564f14d6SBarry Smith m = aij->compressedrow.nrows; 980564f14d6SBarry Smith ii = aij->compressedrow.i; 981564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 982564f14d6SBarry Smith for (i = 0; i < m; i++) { 983564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 984564f14d6SBarry Smith aj = aij->j + ii[i]; 985fff043a9SJunchao Zhang aa = aij_a + ii[i]; 986564f14d6SBarry Smith 987564f14d6SBarry Smith for (j = 0; j < n; j++) { 98825266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 989377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 990564f14d6SBarry Smith *aa = 0.0; 991564f14d6SBarry Smith } 992564f14d6SBarry Smith aa++; 993564f14d6SBarry Smith aj++; 994564f14d6SBarry Smith } 995564f14d6SBarry Smith ridx++; 996564f14d6SBarry Smith } 997564f14d6SBarry Smith } else { /* do not use compressed row format */ 998564f14d6SBarry Smith m = l->B->rmap->n; 999564f14d6SBarry Smith for (i = 0; i < m; i++) { 1000564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1001564f14d6SBarry Smith aj = aij->j + ii[i]; 1002fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1003564f14d6SBarry Smith for (j = 0; j < n; j++) { 100425266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1005377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1006564f14d6SBarry Smith *aa = 0.0; 1007564f14d6SBarry Smith } 1008564f14d6SBarry Smith aa++; 1009564f14d6SBarry Smith aj++; 1010564f14d6SBarry Smith } 1011564f14d6SBarry Smith } 1012564f14d6SBarry Smith } 1013a92ad425SStefano Zampini if (x && b) { 10149566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1016377aa5a1SBarry Smith } 10179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10189566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10199566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10209566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10214f9cfa9eSBarry Smith 10224f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1023f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10244f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 10251c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10264f9cfa9eSBarry Smith } 10273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10289c7c4993SBarry Smith } 10299c7c4993SBarry Smith 1030ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1031d71ae5a4SJacob Faibussowitsch { 1032416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1033b1d57f15SBarry Smith PetscInt nt; 103419b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1035416022c9SBarry Smith 10363a40ed3dSBarry Smith PetscFunctionBegin; 10379566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 103808401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10399566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1040296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10419566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1042296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10441eb62cbbSBarry Smith } 10451eb62cbbSBarry Smith 1046ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1047d71ae5a4SJacob Faibussowitsch { 1048bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1049bd0c2dcbSBarry Smith 1050bd0c2dcbSBarry Smith PetscFunctionBegin; 10519566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1053bd0c2dcbSBarry Smith } 1054bd0c2dcbSBarry Smith 1055ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1056d71ae5a4SJacob Faibussowitsch { 1057416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 105801ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10593a40ed3dSBarry Smith 10603a40ed3dSBarry Smith PetscFunctionBegin; 10619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10629566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10649566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1066da3a660dSBarry Smith } 1067da3a660dSBarry Smith 1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1069d71ae5a4SJacob Faibussowitsch { 1070416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1071da3a660dSBarry Smith 10723a40ed3dSBarry Smith PetscFunctionBegin; 1073da3a660dSBarry Smith /* do nondiagonal part */ 10749566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1075da3a660dSBarry Smith /* do local part */ 10769566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10779613dc34SJunchao Zhang /* add partial results together */ 10789566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10799566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 10803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1081da3a660dSBarry Smith } 1082da3a660dSBarry Smith 1083ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1084d71ae5a4SJacob Faibussowitsch { 10854f423910Svictorle MPI_Comm comm; 1086ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1087ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1088cd0d46ebSvictorle IS Me, Notme; 1089b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 109054d735aeSStefano Zampini PetscBool lf; 1091b1d57f15SBarry Smith PetscMPIInt size; 1092cd0d46ebSvictorle 1093cd0d46ebSvictorle PetscFunctionBegin; 109442e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 10959566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 10961c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 10973ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 10989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 10999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11003ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 110142e5f5b4Svictorle 11027dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11039566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11049566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1106cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1107cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11089566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11099566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11109566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 111166501d38Svictorle Aoff = Aoffs[0]; 11129566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 111366501d38Svictorle Boff = Boffs[0]; 11149566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11159566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11169566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11179566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11199566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1121cd0d46ebSvictorle } 1122cd0d46ebSvictorle 1123ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1124d71ae5a4SJacob Faibussowitsch { 1125416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1126da3a660dSBarry Smith 11273a40ed3dSBarry Smith PetscFunctionBegin; 1128da3a660dSBarry Smith /* do nondiagonal part */ 11299566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1130da3a660dSBarry Smith /* do local part */ 11319566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11329613dc34SJunchao Zhang /* add partial results together */ 11339566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11349566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1136da3a660dSBarry Smith } 1137da3a660dSBarry Smith 11381eb62cbbSBarry Smith /* 11391eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11401eb62cbbSBarry Smith diagonal block 11411eb62cbbSBarry Smith */ 1142ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1143d71ae5a4SJacob Faibussowitsch { 1144416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11453a40ed3dSBarry Smith 11463a40ed3dSBarry Smith PetscFunctionBegin; 114708401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1148aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11499566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11511eb62cbbSBarry Smith } 11521eb62cbbSBarry Smith 1153ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1154d71ae5a4SJacob Faibussowitsch { 1155052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11563a40ed3dSBarry Smith 11573a40ed3dSBarry Smith PetscFunctionBegin; 11589566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11599566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1161052efed2SBarry Smith } 1162052efed2SBarry Smith 1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1164d71ae5a4SJacob Faibussowitsch { 11658e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11668e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11678e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11683ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11692e5835c6SStefano Zampini const PetscScalar *aa, *ba; 117017a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 117117a3732bSBarry Smith PetscInt64 nz, hnz; 11723ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11733ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11743ea6fe3dSLisandro Dalcin PetscScalar *matvals; 117517a3732bSBarry Smith PetscMPIInt rank; 11768e2fed03SBarry Smith 11778e2fed03SBarry Smith PetscFunctionBegin; 11789566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 11793ea6fe3dSLisandro Dalcin 11803ea6fe3dSLisandro Dalcin M = mat->rmap->N; 11813ea6fe3dSLisandro Dalcin N = mat->cmap->N; 11823ea6fe3dSLisandro Dalcin m = mat->rmap->n; 11833ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 11843ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 11858e2fed03SBarry Smith nz = A->nz + B->nz; 11863ea6fe3dSLisandro Dalcin 11873ea6fe3dSLisandro Dalcin /* write matrix header */ 11880700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 11899371c9d4SSatish Balay header[1] = M; 11909371c9d4SSatish Balay header[2] = N; 119117a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 119217a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 119338b83642SBarry Smith if (rank == 0) { 119438b83642SBarry Smith if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT; 119538b83642SBarry Smith else header[3] = (PetscInt)hnz; 119638b83642SBarry Smith } 11979566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 11988e2fed03SBarry Smith 11993ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12013ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12029566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12039566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12048e2fed03SBarry Smith 12053ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12073ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12083ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12093ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12103ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12118e2fed03SBarry Smith } 12129371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12139371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12148e2fed03SBarry Smith } 121517a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12179566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12188e2fed03SBarry Smith 12193ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12233ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12243ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12253ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12262e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12278e2fed03SBarry Smith } 12289371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12299371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12308e2fed03SBarry Smith } 12319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 123317a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12349566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12359566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12368e2fed03SBarry Smith 12373ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12389566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12408e2fed03SBarry Smith } 12418e2fed03SBarry Smith 12429804daf3SBarry Smith #include <petscdraw.h> 1243ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1244d71ae5a4SJacob Faibussowitsch { 124544a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 124632dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1247ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1248b0a32e0cSBarry Smith PetscViewer sviewer; 1249f3ef73ceSBarry Smith PetscViewerFormat format; 1250416022c9SBarry Smith 12513a40ed3dSBarry Smith PetscFunctionBegin; 12529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12539566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 125532077d6dSBarry Smith if (iascii) { 12569566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1257ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 1258f4f49eeaSPierre Jolivet PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1261ef5fdb51SBarry Smith for (i = 0; i < (PetscInt)size; i++) { 1262ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1263ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1264ef5fdb51SBarry Smith navg += nz[i]; 1265ef5fdb51SBarry Smith } 12669566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1267ef5fdb51SBarry Smith navg = navg / size; 12689566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1270ef5fdb51SBarry Smith } 12719566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1272456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12734e220ebcSLois Curfman McInnes MatInfo info; 12746335e310SSatish Balay PetscInt *inodes = NULL; 1275923f20ffSKris Buschelman 12769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12779566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12789566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12799566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1280923f20ffSKris Buschelman if (!inodes) { 12819371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12829371c9d4SSatish Balay (double)info.memory)); 12836831982aSBarry Smith } else { 12849371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 12859371c9d4SSatish Balay (double)info.memory)); 12866831982aSBarry Smith } 12879566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 12889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12899566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 12919566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 12929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 12939566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 12949566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 12953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1296fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1297923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 12989566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1299923f20ffSKris Buschelman if (inodes) { 13009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1301d38fa0fbSBarry Smith } else { 13029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1303d38fa0fbSBarry Smith } 13043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13054aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 130708480c60SBarry Smith } 13088e2fed03SBarry Smith } else if (isbinary) { 13098e2fed03SBarry Smith if (size == 1) { 13109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13119566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13128e2fed03SBarry Smith } else { 13139566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13148e2fed03SBarry Smith } 13153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131671e56450SStefano Zampini } else if (iascii && size == 1) { 13179566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13189566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13200f5bd95cSBarry Smith } else if (isdraw) { 1321b0a32e0cSBarry Smith PetscDraw draw; 1322ace3abfcSBarry Smith PetscBool isnull; 13239566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13249566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13253ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 132619bcc07fSBarry Smith } 132719bcc07fSBarry Smith 132871e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 132971e56450SStefano Zampini Mat A = NULL, Av; 133071e56450SStefano Zampini IS isrow, iscol; 13312ee70a88SLois Curfman McInnes 13329566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13339566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13359566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 133671e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 133771e56450SStefano Zampini /* 133871e56450SStefano Zampini Mat *AA, A = NULL, Av; 133971e56450SStefano Zampini IS isrow,iscol; 134071e56450SStefano Zampini 13419566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13429566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13439566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1344dd400576SPatrick Sanan if (rank == 0) { 13459566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 134671e56450SStefano Zampini A = AA[0]; 134771e56450SStefano Zampini Av = AA[0]; 134895373324SBarry Smith } 13499566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 135071e56450SStefano Zampini */ 13519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 135355843e3eSBarry Smith /* 135455843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1355b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 135655843e3eSBarry Smith */ 13579566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1358dd400576SPatrick Sanan if (rank == 0) { 135948a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13609566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 136195373324SBarry Smith } 13629566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13639566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 136495373324SBarry Smith } 13653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13661eb62cbbSBarry Smith } 13671eb62cbbSBarry Smith 1368d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1369d71ae5a4SJacob Faibussowitsch { 1370ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1371416022c9SBarry Smith 13723a40ed3dSBarry Smith PetscFunctionBegin; 13739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13749566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 137748a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1379416022c9SBarry Smith } 1380416022c9SBarry Smith 1381ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1382d71ae5a4SJacob Faibussowitsch { 138344a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1384f4259b30SLisandro Dalcin Vec bb1 = NULL; 1385ace3abfcSBarry Smith PetscBool hasop; 13868a729477SBarry Smith 13873a40ed3dSBarry Smith PetscFunctionBegin; 1388a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 13899566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 13903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1391a2b30743SBarry Smith } 1392a2b30743SBarry Smith 139348a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 13944e980039SJed Brown 1395c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1396da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 13979566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 13982798e883SHong Zhang its--; 1399da3a660dSBarry Smith } 14002798e883SHong Zhang 14012798e883SHong Zhang while (its--) { 14029566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14039566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14042798e883SHong Zhang 1405c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14069566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14079566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14082798e883SHong Zhang 1409c14dc6b6SHong Zhang /* local sweep */ 14109566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14112798e883SHong Zhang } 14123a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1413da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14149566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14152798e883SHong Zhang its--; 1416da3a660dSBarry Smith } 14172798e883SHong Zhang while (its--) { 14189566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14199566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14202798e883SHong Zhang 1421c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14229566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14239566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1424c14dc6b6SHong Zhang 1425c14dc6b6SHong Zhang /* local sweep */ 14269566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14272798e883SHong Zhang } 14283a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1429da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14309566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14312798e883SHong Zhang its--; 1432da3a660dSBarry Smith } 14332798e883SHong Zhang while (its--) { 14349566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14359566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14362798e883SHong Zhang 1437c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14389566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14399566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14402798e883SHong Zhang 1441c14dc6b6SHong Zhang /* local sweep */ 14429566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14432798e883SHong Zhang } 1444a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1445a7420bb7SBarry Smith Vec xx1; 1446a7420bb7SBarry Smith 14479566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14489566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1449a7420bb7SBarry Smith 14509566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14519566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1452a7420bb7SBarry Smith if (!mat->diag) { 14539566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14549566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1455a7420bb7SBarry Smith } 14569566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1457bd0c2dcbSBarry Smith if (hasop) { 14589566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1459bd0c2dcbSBarry Smith } else { 14609566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1461bd0c2dcbSBarry Smith } 14629566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1463887ee2caSBarry Smith 14649566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1465a7420bb7SBarry Smith 1466a7420bb7SBarry Smith /* local sweep */ 14679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14689566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1470ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1471c14dc6b6SHong Zhang 14729566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1473a0808db4SHong Zhang 14747b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14768a729477SBarry Smith } 1477a66be287SLois Curfman McInnes 1478ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1479d71ae5a4SJacob Faibussowitsch { 148072e6a0cfSJed Brown Mat aA, aB, Aperm; 148172e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 148272e6a0cfSJed Brown PetscScalar *aa, *ba; 148372e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 148472e6a0cfSJed Brown PetscSF rowsf, sf; 14850298fd71SBarry Smith IS parcolp = NULL; 148672e6a0cfSJed Brown PetscBool done; 148742e855d1Svictor 148842e855d1Svictor PetscFunctionBegin; 14899566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 14909566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 14919566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 14929566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 149372e6a0cfSJed Brown 149472e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 14959566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 14969566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 14979566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 149872e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 14999566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15009566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 150172e6a0cfSJed Brown 150272e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15039566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15049566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15059566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 150672e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15079566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15089566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15099566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 151072e6a0cfSJed Brown 15119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15129566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15139566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 151472e6a0cfSJed Brown 151572e6a0cfSJed Brown /* Find out where my gcols should go */ 15169566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15189566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15199566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15209566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152472e6a0cfSJed Brown 15259566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15269566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15279566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 152872e6a0cfSJed Brown for (i = 0; i < m; i++) { 1529131c27b5Sprj- PetscInt row = rdest[i]; 1530131c27b5Sprj- PetscMPIInt rowner; 15319566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 153272e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1533131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1534131c27b5Sprj- PetscMPIInt cowner; 15359566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 153672e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 153772e6a0cfSJed Brown else onnz[i]++; 153872e6a0cfSJed Brown } 153972e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1540131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1541131c27b5Sprj- PetscMPIInt cowner; 15429566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 154372e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 154472e6a0cfSJed Brown else onnz[i]++; 154572e6a0cfSJed Brown } 154672e6a0cfSJed Brown } 15479566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15489566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15519566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 155272e6a0cfSJed Brown 15539566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 155672e6a0cfSJed Brown for (i = 0; i < m; i++) { 155772e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1558970468b0SJed Brown PetscInt j0, rowlen; 155972e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1560970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1561970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15629566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1563970468b0SJed Brown } 156472e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1565970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1566970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15679566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1568970468b0SJed Brown } 156972e6a0cfSJed Brown } 15709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15729566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15739566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15769566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15779566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15789566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15799566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 158072e6a0cfSJed Brown *B = Aperm; 15813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 158242e855d1Svictor } 158342e855d1Svictor 1584ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1585d71ae5a4SJacob Faibussowitsch { 1586c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1587c5e4d11fSDmitry Karpeev 1588c5e4d11fSDmitry Karpeev PetscFunctionBegin; 15899566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1590c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 15913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1592c5e4d11fSDmitry Karpeev } 1593c5e4d11fSDmitry Karpeev 1594ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1595d71ae5a4SJacob Faibussowitsch { 1596a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1597a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 15983966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1599a66be287SLois Curfman McInnes 16003a40ed3dSBarry Smith PetscFunctionBegin; 16014e220ebcSLois Curfman McInnes info->block_size = 1.0; 16029566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16032205254eSKarl Rupp 16049371c9d4SSatish Balay isend[0] = info->nz_used; 16059371c9d4SSatish Balay isend[1] = info->nz_allocated; 16069371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16079371c9d4SSatish Balay isend[3] = info->memory; 16089371c9d4SSatish Balay isend[4] = info->mallocs; 16092205254eSKarl Rupp 16109566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16112205254eSKarl Rupp 16129371c9d4SSatish Balay isend[0] += info->nz_used; 16139371c9d4SSatish Balay isend[1] += info->nz_allocated; 16149371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16159371c9d4SSatish Balay isend[3] += info->memory; 16169371c9d4SSatish Balay isend[4] += info->mallocs; 1617a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16184e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16194e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16204e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16214e220ebcSLois Curfman McInnes info->memory = isend[3]; 16224e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1623a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 16241c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16252205254eSKarl Rupp 16264e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16274e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16284e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16294e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16304e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1631a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 16321c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16332205254eSKarl Rupp 16344e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16354e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16364e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16374e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16384e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1639a66be287SLois Curfman McInnes } 16404e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16414e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16424e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1644a66be287SLois Curfman McInnes } 1645a66be287SLois Curfman McInnes 1646d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1647d71ae5a4SJacob Faibussowitsch { 1648c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1649c74985f6SBarry Smith 16503a40ed3dSBarry Smith PetscFunctionBegin; 165112c028f9SKris Buschelman switch (op) { 1652512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 165312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 165428b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1655a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 165612c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16570ad02fcaSStefano Zampini case MAT_USE_INODES: 165812c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16591a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1660fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16619566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16629566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 166312c028f9SKris Buschelman break; 166412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 166543674050SBarry Smith MatCheckPreallocated(A, 1); 16664e0d8c25SBarry Smith a->roworiented = flg; 16672205254eSKarl Rupp 16689566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16699566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 167012c028f9SKris Buschelman break; 16718c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1672d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1673d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1674d71ae5a4SJacob Faibussowitsch break; 1675d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1676d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1677d71ae5a4SJacob Faibussowitsch break; 1678c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1679ffa07934SHong Zhang case MAT_SPD: 168077e54ba9SKris Buschelman case MAT_SYMMETRIC: 168177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1682bf108f30SBarry Smith case MAT_HERMITIAN: 1683bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1684b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1685b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1686b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 168777e54ba9SKris Buschelman break; 1688d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1689d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1690d71ae5a4SJacob Faibussowitsch break; 1691957cac9fSHong Zhang case MAT_STRUCTURE_ONLY: 1692957cac9fSHong Zhang /* The option is handled directly by MatSetOption() */ 1693957cac9fSHong Zhang break; 1694d71ae5a4SJacob Faibussowitsch default: 1695d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op); 16963a40ed3dSBarry Smith } 16973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1698c74985f6SBarry Smith } 1699c74985f6SBarry Smith 1700d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1701d71ae5a4SJacob Faibussowitsch { 1702154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 170387828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1704d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1705d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1706b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 170739e00950SLois Curfman McInnes 17083a40ed3dSBarry Smith PetscFunctionBegin; 170928b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17107a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17117a0afa10SBarry Smith 171270f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17137a0afa10SBarry Smith /* 17147a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17157a0afa10SBarry Smith */ 17167a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1717b1d57f15SBarry Smith PetscInt max = 1, tmp; 1718d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17197a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17202205254eSKarl Rupp if (max < tmp) max = tmp; 17217a0afa10SBarry Smith } 17229566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17237a0afa10SBarry Smith } 17247a0afa10SBarry Smith 1725aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1726abc0e9e4SLois Curfman McInnes lrow = row - rstart; 172739e00950SLois Curfman McInnes 17289371c9d4SSatish Balay pvA = &vworkA; 17299371c9d4SSatish Balay pcA = &cworkA; 17309371c9d4SSatish Balay pvB = &vworkB; 17319371c9d4SSatish Balay pcB = &cworkB; 17329371c9d4SSatish Balay if (!v) { 17339371c9d4SSatish Balay pvA = NULL; 17349371c9d4SSatish Balay pvB = NULL; 17359371c9d4SSatish Balay } 17369371c9d4SSatish Balay if (!idx) { 17379371c9d4SSatish Balay pcA = NULL; 17389371c9d4SSatish Balay if (!v) pcB = NULL; 17399371c9d4SSatish Balay } 17409566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17419566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1742154123eaSLois Curfman McInnes nztot = nzA + nzB; 1743154123eaSLois Curfman McInnes 174470f0671dSBarry Smith cmap = mat->garray; 1745154123eaSLois Curfman McInnes if (v || idx) { 1746154123eaSLois Curfman McInnes if (nztot) { 1747154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1748b1d57f15SBarry Smith PetscInt imark = -1; 1749154123eaSLois Curfman McInnes if (v) { 175070f0671dSBarry Smith *v = v_p = mat->rowvalues; 175139e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 175270f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1753154123eaSLois Curfman McInnes else break; 1754154123eaSLois Curfman McInnes } 1755154123eaSLois Curfman McInnes imark = i; 175670f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 175770f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1758154123eaSLois Curfman McInnes } 1759154123eaSLois Curfman McInnes if (idx) { 176070f0671dSBarry Smith *idx = idx_p = mat->rowindices; 176170f0671dSBarry Smith if (imark > -1) { 1762ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 176370f0671dSBarry Smith } else { 1764154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 176570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1766154123eaSLois Curfman McInnes else break; 1767154123eaSLois Curfman McInnes } 1768154123eaSLois Curfman McInnes imark = i; 176970f0671dSBarry Smith } 177070f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 177170f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 177239e00950SLois Curfman McInnes } 17733f97c4b0SBarry Smith } else { 1774f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1775f4259b30SLisandro Dalcin if (v) *v = NULL; 17761ca473b0SSatish Balay } 1777154123eaSLois Curfman McInnes } 177839e00950SLois Curfman McInnes *nz = nztot; 17799566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17809566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 178239e00950SLois Curfman McInnes } 178339e00950SLois Curfman McInnes 1784d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1785d71ae5a4SJacob Faibussowitsch { 17867a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 17873a40ed3dSBarry Smith 17883a40ed3dSBarry Smith PetscFunctionBegin; 178928b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 17907a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 17913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179239e00950SLois Curfman McInnes } 179339e00950SLois Curfman McInnes 1794ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1795d71ae5a4SJacob Faibussowitsch { 1796855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1797ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1798d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1799329f5518SBarry Smith PetscReal sum = 0.0; 1800fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 180104ca555eSLois Curfman McInnes 18023a40ed3dSBarry Smith PetscFunctionBegin; 180317699dbbSLois Curfman McInnes if (aij->size == 1) { 18049566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 180537fa93a5SLois Curfman McInnes } else { 18069566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18079566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 180804ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1809fff043a9SJunchao Zhang v = amata; 181004ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18119371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18129371c9d4SSatish Balay v++; 181304ca555eSLois Curfman McInnes } 1814fff043a9SJunchao Zhang v = bmata; 181504ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18169371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18179371c9d4SSatish Balay v++; 181804ca555eSLois Curfman McInnes } 18191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18208f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18219566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18223a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1823329f5518SBarry Smith PetscReal *tmp, *tmp2; 1824b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18259566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 18269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2)); 182704ca555eSLois Curfman McInnes *norm = 0.0; 18289371c9d4SSatish Balay v = amata; 18299371c9d4SSatish Balay jj = amat->j; 183004ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18319371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18329371c9d4SSatish Balay v++; 183304ca555eSLois Curfman McInnes } 18349371c9d4SSatish Balay v = bmata; 18359371c9d4SSatish Balay jj = bmat->j; 183604ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18379371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18389371c9d4SSatish Balay v++; 183904ca555eSLois Curfman McInnes } 18401c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1841d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 184204ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 184304ca555eSLois Curfman McInnes } 18449566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18459566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 18469566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18473a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1848329f5518SBarry Smith PetscReal ntemp = 0.0; 1849d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18508e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 185104ca555eSLois Curfman McInnes sum = 0.0; 185204ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18539371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18549371c9d4SSatish Balay v++; 185504ca555eSLois Curfman McInnes } 18568e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 185704ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18589371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18599371c9d4SSatish Balay v++; 186004ca555eSLois Curfman McInnes } 1861515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 186204ca555eSLois Curfman McInnes } 18631c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18649566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1865ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 186837fa93a5SLois Curfman McInnes } 18693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1870855ac2c5SLois Curfman McInnes } 1871855ac2c5SLois Curfman McInnes 1872ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1873d71ae5a4SJacob Faibussowitsch { 1874a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1875a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1876071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1877071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1878a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1879ce496241SStefano Zampini const MatScalar *pbv, *bv; 1880b7c46309SBarry Smith 18813a40ed3dSBarry Smith PetscFunctionBegin; 18827fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18839371c9d4SSatish Balay ma = A->rmap->n; 18849371c9d4SSatish Balay na = A->cmap->n; 18859371c9d4SSatish Balay mb = a->B->rmap->n; 18869371c9d4SSatish Balay nb = a->B->cmap->n; 18879371c9d4SSatish Balay ai = Aloc->i; 18889371c9d4SSatish Balay aj = Aloc->j; 18899371c9d4SSatish Balay bi = Bloc->i; 18909371c9d4SSatish Balay bj = Bloc->j; 1891fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 189280bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 189380bcc5a1SJed Brown PetscSFNode *oloc; 1894713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 189580bcc5a1SJed Brown 18969566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 189780bcc5a1SJed Brown /* compute d_nnz for preallocation */ 18989566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1899cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 190080bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19019566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 190280bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 190380bcc5a1SJed Brown /* map those to global */ 19049566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19059566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19069566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19079566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 190857168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 190957168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19109566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1911d4bb536fSBarry Smith 19129566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 19149566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs))); 19159566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19169566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19179566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1918fc4dec0aSBarry Smith } else { 1919fc4dec0aSBarry Smith B = *matout; 19209566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1921fc4dec0aSBarry Smith } 1922b7c46309SBarry Smith 1923f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1924a8661f62Sandi selinger A_diag = a->A; 1925a8661f62Sandi selinger B_diag = &b->A; 1926a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1927a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1928a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1929a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1930f79cb1a0Sandi selinger 1931f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1932ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1933f79cb1a0Sandi selinger 19344cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1935a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19367fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19379566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1938f79cb1a0Sandi selinger 1939b7c46309SBarry Smith /* copy over the B part */ 19409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1942ce496241SStefano Zampini pbv = bv; 1943d0f46423SBarry Smith row = A->rmap->rstart; 19442205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 194561a2fbbaSHong Zhang cols_tmp = cols; 1946da668accSHong Zhang for (i = 0; i < mb; i++) { 1947da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19489566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19492205254eSKarl Rupp row++; 1950720a2405SPierre Jolivet if (pbv) pbv += ncol; 1951720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1952b7c46309SBarry Smith } 19539566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1955fc73b1b3SBarry Smith 19569566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19579566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1958cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19590de55854SLois Curfman McInnes *matout = B; 19600de55854SLois Curfman McInnes } else { 19619566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19620de55854SLois Curfman McInnes } 19633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1964b7c46309SBarry Smith } 1965b7c46309SBarry Smith 1966ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1967d71ae5a4SJacob Faibussowitsch { 19684b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19694b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1970b1d57f15SBarry Smith PetscInt s1, s2, s3; 1971a008b906SSatish Balay 19723a40ed3dSBarry Smith PetscFunctionBegin; 19739566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19744b967eb1SSatish Balay if (rr) { 19759566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 197608401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19774b967eb1SSatish Balay /* Overlap communication with computation. */ 19789566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1979a008b906SSatish Balay } 19804b967eb1SSatish Balay if (ll) { 19819566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 198208401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1983dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19844b967eb1SSatish Balay } 19854b967eb1SSatish Balay /* scale the diagonal block */ 1986dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19874b967eb1SSatish Balay 19884b967eb1SSatish Balay if (rr) { 19894b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 19909566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1991dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 19924b967eb1SSatish Balay } 19933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1994a008b906SSatish Balay } 1995a008b906SSatish Balay 1996ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 1997d71ae5a4SJacob Faibussowitsch { 1998bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 19993a40ed3dSBarry Smith 20003a40ed3dSBarry Smith PetscFunctionBegin; 20019566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2003bb5a7306SBarry Smith } 2004bb5a7306SBarry Smith 2005ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2006d71ae5a4SJacob Faibussowitsch { 2007d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2008d4bb536fSBarry Smith Mat a, b, c, d; 2009ace3abfcSBarry Smith PetscBool flg; 2010d4bb536fSBarry Smith 20113a40ed3dSBarry Smith PetscFunctionBegin; 20129371c9d4SSatish Balay a = matA->A; 20139371c9d4SSatish Balay b = matA->B; 20149371c9d4SSatish Balay c = matB->A; 20159371c9d4SSatish Balay d = matB->B; 2016d4bb536fSBarry Smith 20179566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 201848a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 20191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2021d4bb536fSBarry Smith } 2022d4bb536fSBarry Smith 2023ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2024d71ae5a4SJacob Faibussowitsch { 2025cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2026cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2027cb5b572fSBarry Smith 2028cb5b572fSBarry Smith PetscFunctionBegin; 202933f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 203033f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2031cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2032cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2033cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2034cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2035cb5b572fSBarry Smith then copying the submatrices */ 20369566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2037cb5b572fSBarry Smith } else { 20389566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20399566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2040cb5b572fSBarry Smith } 20419566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2043cb5b572fSBarry Smith } 2044cb5b572fSBarry Smith 2045001ddc4fSHong Zhang /* 2046001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2047001ddc4fSHong Zhang have different nonzero structure. 2048001ddc4fSHong Zhang */ 2049d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2050d71ae5a4SJacob Faibussowitsch { 2051001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 205295b7e79eSJed Brown 205395b7e79eSJed Brown PetscFunctionBegin; 205495b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 205595b7e79eSJed Brown for (i = 0; i < m; i++) { 20568e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2057001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2058001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 205995b7e79eSJed Brown nnz[i] = 0; 206095b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2061001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2062001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 206395b7e79eSJed Brown nnz[i]++; 206495b7e79eSJed Brown } 206595b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 206695b7e79eSJed Brown } 20673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 206895b7e79eSJed Brown } 206995b7e79eSJed Brown 2070001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2071d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2072d71ae5a4SJacob Faibussowitsch { 2073001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2074001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2075001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2076001ddc4fSHong Zhang 2077001ddc4fSHong Zhang PetscFunctionBegin; 20789566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2080001ddc4fSHong Zhang } 2081001ddc4fSHong Zhang 2082ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2083d71ae5a4SJacob Faibussowitsch { 2084ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2085ac90fabeSBarry Smith 2086ac90fabeSBarry Smith PetscFunctionBegin; 2087ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20889566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 20899566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2090ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 20919566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2092ac90fabeSBarry Smith } else { 20939f5f6813SShri Abhyankar Mat B; 20949f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2095d9d719b4SStefano Zampini 20969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 20979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 20989566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 20999566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21009566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21019566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21029566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21039566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21049566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21059566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21069566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21079566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21089566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2109ac90fabeSBarry Smith } 21103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2111ac90fabeSBarry Smith } 2112ac90fabeSBarry Smith 21132726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2114354c94deSBarry Smith 2115ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2116d71ae5a4SJacob Faibussowitsch { 21175f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21185f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2119354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2120354c94deSBarry Smith 21219566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21229566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21235f80ce2aSJacob Faibussowitsch } 21243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2125354c94deSBarry Smith } 2126354c94deSBarry Smith 2127ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2128d71ae5a4SJacob Faibussowitsch { 212999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 213099cafbc1SBarry Smith 213199cafbc1SBarry Smith PetscFunctionBegin; 21329566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21339566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 213599cafbc1SBarry Smith } 213699cafbc1SBarry Smith 2137ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2138d71ae5a4SJacob Faibussowitsch { 213999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214099cafbc1SBarry Smith 214199cafbc1SBarry Smith PetscFunctionBegin; 21429566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21439566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214599cafbc1SBarry Smith } 214699cafbc1SBarry Smith 2147ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2148d71ae5a4SJacob Faibussowitsch { 2149c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2150475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 2151475b8b61SHong Zhang PetscScalar *va, *vv; 2152475b8b61SHong Zhang Vec vB, vA; 2153475b8b61SHong Zhang const PetscScalar *vb; 2154c91732d9SHong Zhang 2155c91732d9SHong Zhang PetscFunctionBegin; 2156c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21579566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2158475b8b61SHong Zhang 21599566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 2160c91732d9SHong Zhang if (idx) { 2161475b8b61SHong Zhang for (i = 0; i < m; i++) { 2162d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2163c91732d9SHong Zhang } 2164c91732d9SHong Zhang } 2165c91732d9SHong Zhang 2166c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21689566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2169c91732d9SHong Zhang 21709566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21719566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2172475b8b61SHong Zhang for (i = 0; i < m; i++) { 2173c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2174475b8b61SHong Zhang vv[i] = vb[i]; 2175c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2176475b8b61SHong Zhang } else { 2177475b8b61SHong Zhang vv[i] = va[i]; 21789371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2179c91732d9SHong Zhang } 2180c91732d9SHong Zhang } 21819566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 21829566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 21839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21849566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2188c91732d9SHong Zhang } 2189c91732d9SHong Zhang 2190eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2191eede4a3fSMark Adams { 2192eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2193eede4a3fSMark Adams Vec vB, vA; 2194eede4a3fSMark Adams 2195eede4a3fSMark Adams PetscFunctionBegin; 2196c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2197eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2198c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2199eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2200eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2201eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2202eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2203eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2204eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2205eede4a3fSMark Adams } 2206eede4a3fSMark Adams 2207ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2208d71ae5a4SJacob Faibussowitsch { 2209f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2210f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2211f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2212f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2213f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2214f07e67edSHong Zhang Vec diagV, offdiagV; 2215ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2216ce496241SStefano Zampini const PetscScalar *ba, *bav; 2217f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2218f07e67edSHong Zhang Mat B = mat->B; 2219f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2220c87e5d42SMatthew Knepley 2221c87e5d42SMatthew Knepley PetscFunctionBegin; 2222f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2223f07e67edSHong Zhang if (A->cmap->N == n) { 22249566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22259566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22269566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22279566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2230f07e67edSHong Zhang } else if (n == 0) { 2231f07e67edSHong Zhang if (m) { 22329566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22339371c9d4SSatish Balay for (r = 0; r < m; r++) { 22349371c9d4SSatish Balay a[r] = 0.0; 22359371c9d4SSatish Balay if (idx) idx[r] = -1; 22369371c9d4SSatish Balay } 22379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2238f07e67edSHong Zhang } 22393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2240f07e67edSHong Zhang } 2241f07e67edSHong Zhang 22429566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22439566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22449566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22459566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2246f07e67edSHong Zhang 2247f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22489566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2249ce496241SStefano Zampini ba = bav; 2250f07e67edSHong Zhang bi = b->i; 2251f07e67edSHong Zhang bj = b->j; 22529566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2253f07e67edSHong Zhang for (r = 0; r < m; r++) { 2254f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2255f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22569371c9d4SSatish Balay offdiagA[r] = *ba; 22579371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2258f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2259f07e67edSHong Zhang offdiagA[r] = 0.0; 2260f07e67edSHong Zhang 2261f07e67edSHong Zhang /* Find first hole in the cmap */ 2262f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2263f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2264f07e67edSHong Zhang if (col > j && j < cstart) { 2265f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2266f07e67edSHong Zhang break; 2267f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2268f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2269f07e67edSHong Zhang break; 2270f07e67edSHong Zhang } 2271f07e67edSHong Zhang } 22724e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2273f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2274f07e67edSHong Zhang if (ncols == 0) { 2275f07e67edSHong Zhang if (cstart) { 2276f07e67edSHong Zhang offdiagIdx[r] = 0; 2277f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2278f07e67edSHong Zhang } else { /* ncols > 0 */ 2279f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2280f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2281f07e67edSHong Zhang } 2282f07e67edSHong Zhang } 2283f07e67edSHong Zhang } 2284f07e67edSHong Zhang 2285f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22869371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22879371c9d4SSatish Balay offdiagA[r] = *ba; 22889371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 22899371c9d4SSatish Balay } 22909371c9d4SSatish Balay ba++; 22919371c9d4SSatish Balay bj++; 2292f07e67edSHong Zhang } 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang 22959566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22969566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2297f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2298f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2299f07e67edSHong Zhang a[r] = diagA[r]; 2300f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2301f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2302f07e67edSHong Zhang a[r] = diagA[r]; 2303c87e5d42SMatthew Knepley if (idx) { 2304f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2305f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2306f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2307f07e67edSHong Zhang } 2308f07e67edSHong Zhang } else { 2309f07e67edSHong Zhang a[r] = offdiagA[r]; 2310f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2311c87e5d42SMatthew Knepley } 2312c87e5d42SMatthew Knepley } 23139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23169566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23179566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23189566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23199566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2321c87e5d42SMatthew Knepley } 2322c87e5d42SMatthew Knepley 2323ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2324d71ae5a4SJacob Faibussowitsch { 232503bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2326fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2327fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 232803bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 232903bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 233003bc72f1SMatthew Knepley Vec diagV, offdiagV; 2331ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2332ce496241SStefano Zampini const PetscScalar *ba, *bav; 2333fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2334fa213d2fSHong Zhang Mat B = mat->B; 2335fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 233603bc72f1SMatthew Knepley 233703bc72f1SMatthew Knepley PetscFunctionBegin; 2338fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2339fa213d2fSHong Zhang if (A->cmap->N == n) { 23409566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23419566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23429566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23449566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2346fa213d2fSHong Zhang } else if (n == 0) { 2347fa213d2fSHong Zhang if (m) { 23489566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23499371c9d4SSatish Balay for (r = 0; r < m; r++) { 23509371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23519371c9d4SSatish Balay if (idx) idx[r] = -1; 23529371c9d4SSatish Balay } 23539566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2354fa213d2fSHong Zhang } 23553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2356fa213d2fSHong Zhang } 2357fa213d2fSHong Zhang 23589566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23599566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23609566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23619566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2362fa213d2fSHong Zhang 2363fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2365ce496241SStefano Zampini ba = bav; 2366fa213d2fSHong Zhang bi = b->i; 2367fa213d2fSHong Zhang bj = b->j; 23689566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2369fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2370fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2371fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23729371c9d4SSatish Balay offdiagA[r] = *ba; 23739371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2374fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2375fa213d2fSHong Zhang offdiagA[r] = 0.0; 2376fa213d2fSHong Zhang 2377fa213d2fSHong Zhang /* Find first hole in the cmap */ 2378fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2379fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2380fa213d2fSHong Zhang if (col > j && j < cstart) { 2381fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2382fa213d2fSHong Zhang break; 2383fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2384fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2385fa213d2fSHong Zhang break; 2386fa213d2fSHong Zhang } 2387fa213d2fSHong Zhang } 23884e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2389fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2390fa213d2fSHong Zhang if (ncols == 0) { 2391fa213d2fSHong Zhang if (cstart) { 2392fa213d2fSHong Zhang offdiagIdx[r] = 0; 2393fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2394fa213d2fSHong Zhang } else { /* ncols > 0 */ 2395fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2396fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2397fa213d2fSHong Zhang } 2398fa213d2fSHong Zhang } 2399fa213d2fSHong Zhang } 2400fa213d2fSHong Zhang 2401fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24029371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24039371c9d4SSatish Balay offdiagA[r] = *ba; 24049371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24059371c9d4SSatish Balay } 24069371c9d4SSatish Balay ba++; 24079371c9d4SSatish Balay bj++; 2408fa213d2fSHong Zhang } 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang 24119566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24129566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2413fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2414fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 241503bc72f1SMatthew Knepley a[r] = diagA[r]; 2416fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2417fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2418fa213d2fSHong Zhang a[r] = diagA[r]; 2419fa213d2fSHong Zhang if (idx) { 2420fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 242103bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2422fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2423fa213d2fSHong Zhang } 242403bc72f1SMatthew Knepley } else { 242503bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2426fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 242703bc72f1SMatthew Knepley } 242803bc72f1SMatthew Knepley } 24299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24309566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24319566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24329566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24339566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24359566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243703bc72f1SMatthew Knepley } 243803bc72f1SMatthew Knepley 2439ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2440d71ae5a4SJacob Faibussowitsch { 2441c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24421a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24431a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2444c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2445c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2446c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2447ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2448ce496241SStefano Zampini const PetscScalar *ba, *bav; 24491a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24501a254869SHong Zhang Mat B = mat->B; 24511a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2452c87e5d42SMatthew Knepley 2453c87e5d42SMatthew Knepley PetscFunctionBegin; 24541a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24551a254869SHong Zhang if (A->cmap->N == n) { 24569566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24579566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24589566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24609566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24621a254869SHong Zhang } else if (n == 0) { 24631a254869SHong Zhang if (m) { 24649566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24659371c9d4SSatish Balay for (r = 0; r < m; r++) { 24669371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24679371c9d4SSatish Balay if (idx) idx[r] = -1; 24689371c9d4SSatish Balay } 24699566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24701a254869SHong Zhang } 24713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24721a254869SHong Zhang } 24731a254869SHong Zhang 24749566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24759566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24769566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24779566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24781a254869SHong Zhang 24791a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2481ce496241SStefano Zampini ba = bav; 24821a254869SHong Zhang bi = b->i; 24831a254869SHong Zhang bj = b->j; 24849566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24851a254869SHong Zhang for (r = 0; r < m; r++) { 24861a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24871a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24889371c9d4SSatish Balay offdiagA[r] = *ba; 24899371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 24901a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 24911a254869SHong Zhang offdiagA[r] = 0.0; 24921a254869SHong Zhang 24931a254869SHong Zhang /* Find first hole in the cmap */ 24941a254869SHong Zhang for (j = 0; j < ncols; j++) { 24951a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 24961a254869SHong Zhang if (col > j && j < cstart) { 24971a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 24981a254869SHong Zhang break; 24991a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25001a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25011a254869SHong Zhang break; 25021a254869SHong Zhang } 25031a254869SHong Zhang } 25044e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25051a254869SHong Zhang /* a hole is outside compressed Bcols */ 25061a254869SHong Zhang if (ncols == 0) { 25071a254869SHong Zhang if (cstart) { 25081a254869SHong Zhang offdiagIdx[r] = 0; 25091a254869SHong Zhang } else offdiagIdx[r] = cend; 25101a254869SHong Zhang } else { /* ncols > 0 */ 25111a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25121a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25131a254869SHong Zhang } 25141a254869SHong Zhang } 25151a254869SHong Zhang } 25161a254869SHong Zhang 25171a254869SHong Zhang for (j = 0; j < ncols; j++) { 25189371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25199371c9d4SSatish Balay offdiagA[r] = *ba; 25209371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25219371c9d4SSatish Balay } 25229371c9d4SSatish Balay ba++; 25239371c9d4SSatish Balay bj++; 25241a254869SHong Zhang } 25251a254869SHong Zhang } 25261a254869SHong Zhang 25279566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25289566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25291a254869SHong Zhang for (r = 0; r < m; ++r) { 25301a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2531c87e5d42SMatthew Knepley a[r] = diagA[r]; 25321a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25331a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25341a254869SHong Zhang a[r] = diagA[r]; 25351a254869SHong Zhang if (idx) { 25361a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2537c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25381a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25391a254869SHong Zhang } 2540c87e5d42SMatthew Knepley } else { 2541c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25421a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2543c87e5d42SMatthew Knepley } 2544c87e5d42SMatthew Knepley } 25459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25499566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25519566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2553c87e5d42SMatthew Knepley } 2554c87e5d42SMatthew Knepley 2555d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2556d71ae5a4SJacob Faibussowitsch { 2557f6d58c54SBarry Smith Mat *dummy; 25585494a064SHong Zhang 25595494a064SHong Zhang PetscFunctionBegin; 25609566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2561f6d58c54SBarry Smith *newmat = *dummy; 25629566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25645494a064SHong Zhang } 25655494a064SHong Zhang 2566ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2567d71ae5a4SJacob Faibussowitsch { 2568bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2569bbead8a2SBarry Smith 2570bbead8a2SBarry Smith PetscFunctionBegin; 25719566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25727b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2574bbead8a2SBarry Smith } 2575bbead8a2SBarry Smith 2576d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2577d71ae5a4SJacob Faibussowitsch { 257873a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 257973a71a0fSBarry Smith 258073a71a0fSBarry Smith PetscFunctionBegin; 258108401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25829566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2583679944adSJunchao Zhang if (x->assembled) { 25849566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2585679944adSJunchao Zhang } else { 25869566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2587679944adSJunchao Zhang } 25889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 25899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 25903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 259173a71a0fSBarry Smith } 2592bbead8a2SBarry Smith 2593ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2594d71ae5a4SJacob Faibussowitsch { 2595b1b1104fSBarry Smith PetscFunctionBegin; 2596b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2597b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 25983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2599b1b1104fSBarry Smith } 2600b1b1104fSBarry Smith 2601b1b1104fSBarry Smith /*@ 2602f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2603f2afee66SBarry Smith 26042ef1f0ffSBarry Smith Not Collective 2605f2afee66SBarry Smith 2606f2afee66SBarry Smith Input Parameter: 2607f2afee66SBarry Smith . A - the matrix 2608f2afee66SBarry Smith 2609f2afee66SBarry Smith Output Parameter: 2610f2afee66SBarry Smith . nz - the number of nonzeros 2611f2afee66SBarry Smith 2612f2afee66SBarry Smith Level: advanced 2613f2afee66SBarry Smith 2614fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2615f2afee66SBarry Smith @*/ 2616d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2617d71ae5a4SJacob Faibussowitsch { 2618f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2619f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2620dfebb78cSStefano Zampini PetscBool isaij; 2621f2afee66SBarry Smith 2622f2afee66SBarry Smith PetscFunctionBegin; 2623dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2624dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2625f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2627f2afee66SBarry Smith } 2628f2afee66SBarry Smith 2629f2afee66SBarry Smith /*@ 2630b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2631b1b1104fSBarry Smith 2632c3339decSBarry Smith Collective 2633b1b1104fSBarry Smith 2634b1b1104fSBarry Smith Input Parameters: 2635b1b1104fSBarry Smith + A - the matrix 263611a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2637b1b1104fSBarry Smith 263896a0c994SBarry Smith Level: advanced 263996a0c994SBarry Smith 2640fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2641b1b1104fSBarry Smith @*/ 2642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2643d71ae5a4SJacob Faibussowitsch { 2644b1b1104fSBarry Smith PetscFunctionBegin; 2645cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2647b1b1104fSBarry Smith } 2648b1b1104fSBarry Smith 2649d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject) 2650d71ae5a4SJacob Faibussowitsch { 2651b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2652b1b1104fSBarry Smith 2653b1b1104fSBarry Smith PetscFunctionBegin; 2654d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2655b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26569566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26571baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2658d0609cedSBarry Smith PetscOptionsHeadEnd(); 26593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2660b1b1104fSBarry Smith } 2661b1b1104fSBarry Smith 2662ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2663d71ae5a4SJacob Faibussowitsch { 26647d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2665c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26667d68702bSBarry Smith 26677d68702bSBarry Smith PetscFunctionBegin; 2668c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26699566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26705519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2671b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2673b83222d8SBarry Smith aij->nonew = nonew; 26747d68702bSBarry Smith } 26759566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26777d68702bSBarry Smith } 26787d68702bSBarry Smith 2679ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2680d71ae5a4SJacob Faibussowitsch { 26813b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26823b49f96aSBarry Smith 26833b49f96aSBarry Smith PetscFunctionBegin; 268408401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26859566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26863b49f96aSBarry Smith if (d) { 26873b49f96aSBarry Smith PetscInt rstart; 26889566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 26893b49f96aSBarry Smith *d += rstart; 26903b49f96aSBarry Smith } 26913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26923b49f96aSBarry Smith } 26933b49f96aSBarry Smith 2694ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2695d71ae5a4SJacob Faibussowitsch { 2696a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2697a8ee9fb5SBarry Smith 2698a8ee9fb5SBarry Smith PetscFunctionBegin; 26999566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2701a8ee9fb5SBarry Smith } 27023b49f96aSBarry Smith 270358c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2704dec0b466SHong Zhang { 2705dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2706dec0b466SHong Zhang 2707dec0b466SHong Zhang PetscFunctionBegin; 270858c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 270958c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2711dec0b466SHong Zhang } 2712dec0b466SHong Zhang 2713cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2714cda55fadSBarry Smith MatGetRow_MPIAIJ, 2715cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2716cda55fadSBarry Smith MatMult_MPIAIJ, 271797304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27187c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27197c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2720f4259b30SLisandro Dalcin NULL, 2721f4259b30SLisandro Dalcin NULL, 2722f4259b30SLisandro Dalcin NULL, 2723f4259b30SLisandro Dalcin /*10*/ NULL, 2724f4259b30SLisandro Dalcin NULL, 2725f4259b30SLisandro Dalcin NULL, 272641f059aeSBarry Smith MatSOR_MPIAIJ, 2727b7c46309SBarry Smith MatTranspose_MPIAIJ, 272897304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2729cda55fadSBarry Smith MatEqual_MPIAIJ, 2730cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2731cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2732cda55fadSBarry Smith MatNorm_MPIAIJ, 273397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2734cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2735cda55fadSBarry Smith MatSetOption_MPIAIJ, 2736cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2737d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2738f4259b30SLisandro Dalcin NULL, 2739f4259b30SLisandro Dalcin NULL, 2740f4259b30SLisandro Dalcin NULL, 2741f4259b30SLisandro Dalcin NULL, 274226cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2743f4259b30SLisandro Dalcin NULL, 2744f4259b30SLisandro Dalcin NULL, 2745a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2746f4259b30SLisandro Dalcin NULL, 2747d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2748f4259b30SLisandro Dalcin NULL, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 2752d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27537dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2754cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2755cda55fadSBarry Smith MatGetValues_MPIAIJ, 2756cb5b572fSBarry Smith MatCopy_MPIAIJ, 2757d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2758cda55fadSBarry Smith MatScale_MPIAIJ, 27597d68702bSBarry Smith MatShift_MPIAIJ, 276099e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2761564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 276273a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27638a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27648a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2765f4259b30SLisandro Dalcin NULL, 2766f4259b30SLisandro Dalcin NULL, 276793dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2768f4259b30SLisandro Dalcin NULL, 2769cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 277072e6a0cfSJed Brown MatPermute_MPIAIJ, 2771f4259b30SLisandro Dalcin NULL, 27727dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2773e03a110bSBarry Smith MatDestroy_MPIAIJ, 2774e03a110bSBarry Smith MatView_MPIAIJ, 2775f4259b30SLisandro Dalcin NULL, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin /*64*/ NULL, 2778f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2779f4259b30SLisandro Dalcin NULL, 2780f4259b30SLisandro Dalcin NULL, 2781f4259b30SLisandro Dalcin NULL, 2782d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2783c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2784f4259b30SLisandro Dalcin NULL, 2785f4259b30SLisandro Dalcin NULL, 2786f4259b30SLisandro Dalcin NULL, 2787f4259b30SLisandro Dalcin NULL, 27883acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2789b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 2792f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2793f4259b30SLisandro Dalcin /*80*/ NULL, 2794f4259b30SLisandro Dalcin NULL, 2795f4259b30SLisandro Dalcin NULL, 27965bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 27976cff0a6bSPierre Jolivet NULL, 2798f4259b30SLisandro Dalcin NULL, 2799f4259b30SLisandro Dalcin NULL, 2800f4259b30SLisandro Dalcin NULL, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin /*89*/ NULL, 2803f4259b30SLisandro Dalcin NULL, 280426be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 2807cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2808f4259b30SLisandro Dalcin NULL, 2809f4259b30SLisandro Dalcin NULL, 2810f4259b30SLisandro Dalcin NULL, 2811b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28124222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2813f4259b30SLisandro Dalcin NULL, 2814f4259b30SLisandro Dalcin NULL, 28152fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2816f4259b30SLisandro Dalcin NULL, 2817d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 281899cafbc1SBarry Smith MatRealPart_MPIAIJ, 281969db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2820f4259b30SLisandro Dalcin NULL, 2821f4259b30SLisandro Dalcin NULL, 2822f4259b30SLisandro Dalcin /*109*/ NULL, 2823f4259b30SLisandro Dalcin NULL, 28245494a064SHong Zhang MatGetRowMin_MPIAIJ, 2825f4259b30SLisandro Dalcin NULL, 28263b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2827d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2828f4259b30SLisandro Dalcin NULL, 2829c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2830f4259b30SLisandro Dalcin NULL, 2831f4259b30SLisandro Dalcin NULL, 2832b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2833f4259b30SLisandro Dalcin NULL, 2834f4259b30SLisandro Dalcin NULL, 2835f4259b30SLisandro Dalcin NULL, 2836b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2837f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2838a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2839bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2840a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28417dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2842f4259b30SLisandro Dalcin /*129*/ NULL, 2843f4259b30SLisandro Dalcin NULL, 2844f4259b30SLisandro Dalcin NULL, 2845187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2846f4259b30SLisandro Dalcin NULL, 2847f4259b30SLisandro Dalcin /*134*/ NULL, 2848f4259b30SLisandro Dalcin NULL, 2849f4259b30SLisandro Dalcin NULL, 2850f4259b30SLisandro Dalcin NULL, 2851f4259b30SLisandro Dalcin NULL, 285246533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2853f4259b30SLisandro Dalcin NULL, 2854f4259b30SLisandro Dalcin NULL, 28559c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2856a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28574222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2858f4259b30SLisandro Dalcin /*145*/ NULL, 2859f4259b30SLisandro Dalcin NULL, 286072833a62Smarkadams4 NULL, 286172833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28622d776b49SBarry Smith NULL, 2863dec0b466SHong Zhang /*150*/ NULL, 2864eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 2865*4cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 2866*4cc2b5b5SPierre Jolivet NULL}; 286736ce4990SBarry Smith 2868ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2869d71ae5a4SJacob Faibussowitsch { 28702e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28712e8a6d31SBarry Smith 28722e8a6d31SBarry Smith PetscFunctionBegin; 28739566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28749566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28762e8a6d31SBarry Smith } 28772e8a6d31SBarry Smith 2878ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2879d71ae5a4SJacob Faibussowitsch { 28802e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28812e8a6d31SBarry Smith 28822e8a6d31SBarry Smith PetscFunctionBegin; 28839566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28849566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28862e8a6d31SBarry Smith } 28878a729477SBarry Smith 2888d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2889d71ae5a4SJacob Faibussowitsch { 2890ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 28915d2a9ed1SStefano Zampini PetscMPIInt size; 2892a23d5eceSKris Buschelman 2893a23d5eceSKris Buschelman PetscFunctionBegin; 2894ad79cf63SBarry Smith if (B->hash_active) { 2895aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2896ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2897ad79cf63SBarry Smith } 28989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 28999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2900899cda47SBarry Smith 2901cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2902eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2903cb7b82ddSBarry Smith #else 29049566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2905cb7b82ddSBarry Smith #endif 29069566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29079566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29089566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2909cb7b82ddSBarry Smith 29109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2911c508b908SBarry Smith 2912c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29139566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29149566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29169566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29179566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2918c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2919cb7b82ddSBarry Smith 2920c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2921ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29229566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29249566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29259566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2926c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2927899cda47SBarry Smith 29289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2930526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2931cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 293215001458SStefano Zampini B->assembled = PETSC_FALSE; 29333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2934a23d5eceSKris Buschelman } 2935a23d5eceSKris Buschelman 2936ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2937d71ae5a4SJacob Faibussowitsch { 2938ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2939846b4da1SFande Kong 2940846b4da1SFande Kong PetscFunctionBegin; 2941846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29439566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2944846b4da1SFande Kong 2945846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2946eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2947846b4da1SFande Kong #else 29489566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2949846b4da1SFande Kong #endif 29509566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29529566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2953846b4da1SFande Kong 29549566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29559566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2956846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2957846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2958846b4da1SFande Kong B->assembled = PETSC_FALSE; 29593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2960846b4da1SFande Kong } 2961846b4da1SFande Kong 2962d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2963d71ae5a4SJacob Faibussowitsch { 2964d6dfbf8fSBarry Smith Mat mat; 2965416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2966d6dfbf8fSBarry Smith 29673a40ed3dSBarry Smith PetscFunctionBegin; 2968f4259b30SLisandro Dalcin *newmat = NULL; 29699566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29709566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29719566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29729566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2973273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2974e1b6402fSHong Zhang 2975d5f3da31SBarry Smith mat->factortype = matin->factortype; 2976501880eeSStefano Zampini mat->assembled = matin->assembled; 2977e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2978d6dfbf8fSBarry Smith 297917699dbbSLois Curfman McInnes a->size = oldmat->size; 298017699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2981e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2982e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2983501880eeSStefano Zampini a->rowindices = NULL; 2984501880eeSStefano Zampini a->rowvalues = NULL; 2985bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2986d6dfbf8fSBarry Smith 29879566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29889566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2989420957c1SBarry Smith if (matin->hash_active) { 2990420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2991420957c1SBarry Smith } else { 2992420957c1SBarry Smith mat->preallocated = matin->preallocated; 29932ee70a88SLois Curfman McInnes if (oldmat->colmap) { 2994aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2995eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2996b1fc9764SSatish Balay #else 29979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 29989566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 2999b1fc9764SSatish Balay #endif 3000501880eeSStefano Zampini } else a->colmap = NULL; 30013f41c07dSBarry Smith if (oldmat->garray) { 3002b1d57f15SBarry Smith PetscInt len; 3003d0f46423SBarry Smith len = oldmat->B->cmap->n; 30049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30059566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3006501880eeSStefano Zampini } else a->garray = NULL; 3007d6dfbf8fSBarry Smith 30080de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30090de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30100de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3011aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3012cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3013cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3014cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3015cff58d65SJunchao Zhang } 30169566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30179566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3018420957c1SBarry Smith } 30199566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30208a729477SBarry Smith *newmat = mat; 30213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30228a729477SBarry Smith } 3023416022c9SBarry Smith 3024d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3025d71ae5a4SJacob Faibussowitsch { 302652f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 302752f91c60SVaclav Hapla 302852f91c60SVaclav Hapla PetscFunctionBegin; 302952f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 303052f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3031c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30329566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30339566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30349566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 303552f91c60SVaclav Hapla if (isbinary) { 30369566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 303752f91c60SVaclav Hapla } else if (ishdf5) { 303852f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30399566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 304052f91c60SVaclav Hapla #else 304152f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 304252f91c60SVaclav Hapla #endif 304352f91c60SVaclav Hapla } else { 304498921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 304552f91c60SVaclav Hapla } 30463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 304752f91c60SVaclav Hapla } 304852f91c60SVaclav Hapla 3049d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3050d71ae5a4SJacob Faibussowitsch { 30513ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30523ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30533ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30548fb81238SShri Abhyankar 30558fb81238SShri Abhyankar PetscFunctionBegin; 30569566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30578fb81238SShri Abhyankar 30583ea6fe3dSLisandro Dalcin /* read in matrix header */ 30599566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 306008401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30619371c9d4SSatish Balay M = header[1]; 30629371c9d4SSatish Balay N = header[2]; 30639371c9d4SSatish Balay nz = header[3]; 306408401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 306508401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 306608401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 306708ea439dSMark F. Adams 30683ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30699566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30703ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30713ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30723ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30739566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30749566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30758fb81238SShri Abhyankar 30763ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30779566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3078aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30798fb81238SShri Abhyankar 30803ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30819566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30839566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30849371c9d4SSatish Balay rowidxs[0] = 0; 30859371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 308638b83642SBarry Smith if (nz != PETSC_MAX_INT) { 30871c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 308808401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 308938b83642SBarry Smith } 309038b83642SBarry Smith 30913ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30929566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 30939566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 30949566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 30953ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 30969566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 30979566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 30989566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 30993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31008fb81238SShri Abhyankar } 31018fb81238SShri Abhyankar 31023782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3103ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3104d71ae5a4SJacob Faibussowitsch { 31054aa3045dSJed Brown IS iscol_local; 3106c5e4d11fSDmitry Karpeev PetscBool isstride; 3107c5e4d11fSDmitry Karpeev PetscMPIInt lisstride = 0, gisstride; 31083782ecc7SHong Zhang 31093782ecc7SHong Zhang PetscFunctionBegin; 31103782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31123782ecc7SHong Zhang 3113c5e4d11fSDmitry Karpeev if (isstride) { 3114c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31159566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31169566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31179566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 3118c5e4d11fSDmitry Karpeev if (mstart == start && mlen - mstart == len) lisstride = 1; 3119c5e4d11fSDmitry Karpeev } 31203782ecc7SHong Zhang 31211c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3122c5e4d11fSDmitry Karpeev if (gisstride) { 3123c5e4d11fSDmitry Karpeev PetscInt N; 31249566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31259566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31269566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31279566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3128c5e4d11fSDmitry Karpeev } else { 3129c5bfad50SMark F. Adams PetscInt cbs; 31309566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31319566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31329566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3133b79d0421SJed Brown } 31343782ecc7SHong Zhang 31353782ecc7SHong Zhang *isseq = iscol_local; 31363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3137c5e4d11fSDmitry Karpeev } 31388d2139bdSHong Zhang 3139ddfdf956SHong Zhang /* 31409c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31419c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3142ddfdf956SHong Zhang 3143ddfdf956SHong Zhang Input Parameters: 314427430b45SBarry Smith + mat - matrix 314527430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31469c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 314727430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3148ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 314927430b45SBarry Smith 315027430b45SBarry Smith Output Parameters: 315127430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 315227430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 315327430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 315427430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3155ddfdf956SHong Zhang */ 3156ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[]) 3157d71ae5a4SJacob Faibussowitsch { 3158040216a4SHong Zhang Vec x, cmap; 3159040216a4SHong Zhang const PetscInt *is_idx; 3160040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31619c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3162040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3163040216a4SHong Zhang Mat B = a->B; 3164040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3165a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31668b3fa1f7SHong Zhang MPI_Comm comm; 31673a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31683782ecc7SHong Zhang 31693782ecc7SHong Zhang PetscFunctionBegin; 31709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31719566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31728b3fa1f7SHong Zhang 3173ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31749566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31759566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31769566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31779566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31780a351717SHong Zhang 31799c988bcaSHong Zhang /* Get start indices */ 31809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3181ddfdf956SHong Zhang isstart -= ncols; 31829566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3183040216a4SHong Zhang 31849566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31859566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31869566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3188ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31898b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3190ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31919c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31928b3fa1f7SHong Zhang } 31939566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 31949566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 31959566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 31968b3fa1f7SHong Zhang 31979c988bcaSHong Zhang /* Get iscol_d */ 31989566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 31999566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32009566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3201feb78a15SHong Zhang 32029c988bcaSHong Zhang /* Get isrow_d */ 32039566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3204feb78a15SHong Zhang rstart = mat->rmap->rstart; 32059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32069566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32079c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32089566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3209feb78a15SHong Zhang 32109566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32119566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32129566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3213feb78a15SHong Zhang 32149c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32159566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32169566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3217ddfdf956SHong Zhang 32189566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 321907250d77SHong Zhang 32209566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32219566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 322264efcef9SHong Zhang 32239c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3224ddfdf956SHong Zhang /* off-process column indices */ 32259c988bcaSHong Zhang count = 0; 32269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3228feb78a15SHong Zhang 32299566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32309566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32318b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3232f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32339c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32341c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32351c645242SHong Zhang count++; 32368b3fa1f7SHong Zhang } 32378b3fa1f7SHong Zhang } 32389566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 324007250d77SHong Zhang 32419566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3242b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3243b6d9b4e0SHong Zhang 32449566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32459c988bcaSHong Zhang *garray = cmap1; 32469c988bcaSHong Zhang 32479566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32499566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3251040216a4SHong Zhang } 3252040216a4SHong Zhang 3253b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3254d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3255d71ae5a4SJacob Faibussowitsch { 3256b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32571fd43edeSHong Zhang Mat M = NULL; 32583b00a383SHong Zhang MPI_Comm comm; 3259b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32603b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3261b20e2604SHong Zhang PetscInt n; 32623b00a383SHong Zhang 32633b00a383SHong Zhang PetscFunctionBegin; 32649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32653b00a383SHong Zhang 32663b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3267b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32689566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 326928b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32703b00a383SHong Zhang 32719566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 327228b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32733b00a383SHong Zhang 32749566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 327528b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32763b00a383SHong Zhang 3277b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3278b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32799566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32809566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 328148a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32829566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32839566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32843b00a383SHong Zhang 32853b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 32869c988bcaSHong Zhang const PetscInt *garray; 3287b20e2604SHong Zhang PetscInt BsubN; 32883b00a383SHong Zhang 3289b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32909566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32913b00a383SHong Zhang 3292b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 32939566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 32949566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 32953b00a383SHong Zhang 32969c988bcaSHong Zhang /* Create submatrix M */ 32979566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M)); 32983b00a383SHong Zhang 3299b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3300b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33017cfce09cSHong Zhang 33029566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3303b20e2604SHong Zhang n = asub->B->cmap->N; 3304b20e2604SHong Zhang if (BsubN > n) { 3305c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33067cfce09cSHong Zhang const PetscInt *idx; 33079c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33089566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33097cfce09cSHong Zhang 33109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33117cfce09cSHong Zhang j = 0; 33129566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3313b20e2604SHong Zhang for (i = 0; i < n; i++) { 33147cfce09cSHong Zhang if (j >= BsubN) break; 33159c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33167cfce09cSHong Zhang 33179c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33187cfce09cSHong Zhang idx_new[i] = idx[j++]; 331998921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33207cfce09cSHong Zhang } 33219566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33227cfce09cSHong Zhang 33239566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33249566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33257cfce09cSHong Zhang 3326b20e2604SHong Zhang } else if (BsubN < n) { 332798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3328b20e2604SHong Zhang } 33297cfce09cSHong Zhang 33309566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3331b20e2604SHong Zhang *submat = M; 33323b00a383SHong Zhang 3333e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33349566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33363b00a383SHong Zhang 33379566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33393b00a383SHong Zhang 33409566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33423b00a383SHong Zhang } 33433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33443b00a383SHong Zhang } 33453b00a383SHong Zhang 3346d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3347d71ae5a4SJacob Faibussowitsch { 33481358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33493782ecc7SHong Zhang PetscInt csize; 335018e627e3SHong Zhang PetscInt n, i, j, start, end; 33514a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33523782ecc7SHong Zhang MPI_Comm comm; 33533782ecc7SHong Zhang 33543782ecc7SHong Zhang PetscFunctionBegin; 3355bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3356a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33578f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33589566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3359d5761cdaSHong Zhang if (isrow_d) { 3360d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3361d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3362d5761cdaSHong Zhang } else { 33639566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3364d5761cdaSHong Zhang if (iscol_local) { 3365d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3366d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3367d5761cdaSHong Zhang } 3368d5761cdaSHong Zhang } 33698f69fa7bSHong Zhang } else { 3370e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 337118e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33729566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33733782ecc7SHong Zhang if (!n) { 337418e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33753782ecc7SHong Zhang } else { 33769566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33779566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3378ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33798f69fa7bSHong Zhang } 33803782ecc7SHong Zhang 3381e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 338218e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33839566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 338418e627e3SHong Zhang if (!n) { 338518e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 338618e627e3SHong Zhang } else { 33879566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33889566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 338918e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 339018e627e3SHong Zhang } 339118e627e3SHong Zhang 33929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 33931c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 339418e627e3SHong Zhang sameRowDist = tsameDist[0]; 339518e627e3SHong Zhang } 339618e627e3SHong Zhang 339718e627e3SHong Zhang if (sameRowDist) { 3398b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 33993b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34009566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3402b20e2604SHong Zhang } else { /* sameRowDist */ 34033b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34041358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34051358a193SHong Zhang PetscBool sorted; 34069566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34079566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34089566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 340908401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34101358a193SHong Zhang 34119566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34121358a193SHong Zhang if (sorted) { 34131358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34149566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34163782ecc7SHong Zhang } 34171358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 341848c0d076SHong Zhang IS iscol_sub; 34199566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 342048c0d076SHong Zhang if (iscol_sub) { 34219566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 342348c0d076SHong Zhang } 34241358a193SHong Zhang } 34251358a193SHong Zhang } 34261358a193SHong Zhang } 34273782ecc7SHong Zhang 3428bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34293782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34309566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 343128b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34323782ecc7SHong Zhang } else { 343348a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34341358a193SHong Zhang } 34353782ecc7SHong Zhang 34369566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34379566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34388f69fa7bSHong Zhang 3439b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34409566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3442b79d0421SJed Brown } 34433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34444aa3045dSJed Brown } 34454aa3045dSJed Brown 3446feb78a15SHong Zhang /*@C 344711a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3448feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3449feb78a15SHong Zhang 3450d083f849SBarry Smith Collective 3451feb78a15SHong Zhang 3452feb78a15SHong Zhang Input Parameters: 3453feb78a15SHong Zhang + comm - MPI communicator 3454feb78a15SHong Zhang . A - "diagonal" portion of matrix 3455b20e2604SHong Zhang . B - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine 34562ef1f0ffSBarry Smith - garray - global index of `B` columns 3457feb78a15SHong Zhang 3458feb78a15SHong Zhang Output Parameter: 34592ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 346027430b45SBarry Smith 3461feb78a15SHong Zhang Level: advanced 3462feb78a15SHong Zhang 3463feb78a15SHong Zhang Notes: 346411a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 346511a5261eSBarry Smith 34662ef1f0ffSBarry Smith `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore. 3467feb78a15SHong Zhang 34681cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3469feb78a15SHong Zhang @*/ 3470d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat) 3471d71ae5a4SJacob Faibussowitsch { 3472feb78a15SHong Zhang Mat_MPIAIJ *maij; 3473e489de8fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data, *bnew; 3474a5348796SHong Zhang PetscInt *oi = b->i, *oj = b->j, i, nz, col; 3475ce496241SStefano Zampini const PetscScalar *oa; 3476e489de8fSHong Zhang Mat Bnew; 3477feb78a15SHong Zhang PetscInt m, n, N; 34784ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3479feb78a15SHong Zhang 3480feb78a15SHong Zhang PetscFunctionBegin; 34819566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 34829566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 348308401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 348437a5e0faSPierre Jolivet PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3485b6d9b4e0SHong Zhang /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */ 348608401ef6SPierre Jolivet /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */ 3487feb78a15SHong Zhang 3488e489de8fSHong Zhang /* Get global columns of mat */ 34891c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm)); 3490feb78a15SHong Zhang 34919566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N)); 34924ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 34934ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 34944ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 34954ab4d6f4SRichard Tran Mills 349637a5e0faSPierre Jolivet if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3497feb78a15SHong Zhang maij = (Mat_MPIAIJ *)(*mat)->data; 3498feb78a15SHong Zhang 3499feb78a15SHong Zhang (*mat)->preallocated = PETSC_TRUE; 3500feb78a15SHong Zhang 35019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3503feb78a15SHong Zhang 3504e489de8fSHong Zhang /* Set A as diagonal portion of *mat */ 3505feb78a15SHong Zhang maij->A = A; 3506feb78a15SHong Zhang 3507a5348796SHong Zhang nz = oi[m]; 3508a5348796SHong Zhang for (i = 0; i < nz; i++) { 3509a5348796SHong Zhang col = oj[i]; 3510a5348796SHong Zhang oj[i] = garray[col]; 3511feb78a15SHong Zhang } 3512feb78a15SHong Zhang 3513e489de8fSHong Zhang /* Set Bnew as off-diagonal portion of *mat */ 35149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &oa)); 35159566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew)); 35169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &oa)); 3517e489de8fSHong Zhang bnew = (Mat_SeqAIJ *)Bnew->data; 3518e489de8fSHong Zhang bnew->maxnz = b->maxnz; /* allocated nonzeros of B */ 3519e489de8fSHong Zhang maij->B = Bnew; 3520d5761cdaSHong Zhang 352108401ef6SPierre Jolivet PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N); 3522d5761cdaSHong Zhang 3523e489de8fSHong Zhang b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */ 3524d5761cdaSHong Zhang b->free_a = PETSC_FALSE; 3525d5761cdaSHong Zhang b->free_ij = PETSC_FALSE; 35269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 3527d5761cdaSHong Zhang 3528e489de8fSHong Zhang bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */ 3529e489de8fSHong Zhang bnew->free_a = PETSC_TRUE; 3530e489de8fSHong Zhang bnew->free_ij = PETSC_TRUE; 3531feb78a15SHong Zhang 3532a5348796SHong Zhang /* condense columns of maij->B */ 35339566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 35349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 35359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 35369566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 35379566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3539feb78a15SHong Zhang } 3540feb78a15SHong Zhang 3541ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35424aa3045dSJed Brown 3543d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3544d71ae5a4SJacob Faibussowitsch { 354598b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 354685f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 354798b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35481fd43edeSHong Zhang Mat M, Msub, B = a->B; 354998b658c4SHong Zhang MatScalar *aa; 355000e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3551a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 355298b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 355398b658c4SHong Zhang IS iscol_sub, iscmap; 355498b658c4SHong Zhang const PetscInt *is_idx, *cmap; 355518e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3556a31a438cSHong Zhang MPI_Comm comm; 35577e2c5f70SBarry Smith 3558a0ff6018SBarry Smith PetscFunctionBegin; 35599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3560d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35619566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 356228b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35639566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3564d5761cdaSHong Zhang 35659566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 356628b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3567d5761cdaSHong Zhang 35689566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 356928b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3570d5761cdaSHong Zhang 35719566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3572d5761cdaSHong Zhang 3573d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35743b00a383SHong Zhang PetscBool flg; 35753b00a383SHong Zhang 35769566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35779566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3578bcae8d28SHong Zhang 35793b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3580366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35819566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3582366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 35831c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3584366a327dSHong Zhang if (allcolumns) { 3585366a327dSHong Zhang iscol_sub = iscol_local; 35869566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35879566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3588366a327dSHong Zhang 35893b00a383SHong Zhang } else { 35901358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3591244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35949566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 35958d2139bdSHong Zhang count = 0; 3596a31a438cSHong Zhang k = 0; 3597a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3598a31a438cSHong Zhang j = is_idx[i]; 3599a31a438cSHong Zhang if (j >= cstart && j < cend) { 3600a31a438cSHong Zhang /* diagonal part of mat */ 36018d2139bdSHong Zhang idx[count] = j; 3602366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36034a3daf6eSHong Zhang } else if (Bn) { 3604a31a438cSHong Zhang /* off-diagonal part of mat */ 3605a31a438cSHong Zhang if (j == garray[k]) { 36068d2139bdSHong Zhang idx[count] = j; 3607a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3608a31a438cSHong Zhang } else if (j > garray[k]) { 3609a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3610a31a438cSHong Zhang if (j == garray[k]) { 3611a31a438cSHong Zhang idx[count] = j; 3612a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36138d2139bdSHong Zhang } 36148d2139bdSHong Zhang } 36158d2139bdSHong Zhang } 36168d2139bdSHong Zhang } 36179566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36188d2139bdSHong Zhang 36199566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36209566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36219566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3622b6d9b4e0SHong Zhang 36239566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3624a31a438cSHong Zhang } 36258b3fa1f7SHong Zhang 36263b00a383SHong Zhang /* (3) Create sequential Msub */ 36279566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3628d5761cdaSHong Zhang } 36298d2139bdSHong Zhang 36309566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 363198b658c4SHong Zhang aij = (Mat_SeqAIJ *)(Msub)->data; 363298b658c4SHong Zhang ii = aij->i; 36339566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3634a0ff6018SBarry Smith 3635a0ff6018SBarry Smith /* 3636a0ff6018SBarry Smith m - number of local rows 3637a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3638a0ff6018SBarry Smith rstart - first row in new global matrix generated 3639a0ff6018SBarry Smith */ 36409566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 364198b658c4SHong Zhang 36423b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36433b00a383SHong Zhang /* (4) Create parallel newmat */ 364498b658c4SHong Zhang PetscMPIInt rank, size; 3645bcae8d28SHong Zhang PetscInt csize; 364698b658c4SHong Zhang 36479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 364900e6dbe6SBarry Smith 3650a0ff6018SBarry Smith /* 365100e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 365200e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3653a0ff6018SBarry Smith */ 365400e6dbe6SBarry Smith 365500e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36569566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36576a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36589566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3659a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3660e2c4fddaSBarry Smith nlocal = m; 36616a6a5d1dSBarry Smith } else { 3662a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3663ab50ec6bSBarry Smith } 3664ab50ec6bSBarry Smith } else { 36656a6a5d1dSBarry Smith nlocal = csize; 36666a6a5d1dSBarry Smith } 36679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 366800e6dbe6SBarry Smith rstart = rend - nlocal; 3669aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 367000e6dbe6SBarry Smith 367100e6dbe6SBarry Smith /* next, compute all the lengths */ 367298b658c4SHong Zhang jj = aij->j; 36739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 367400e6dbe6SBarry Smith olens = dlens + m; 367500e6dbe6SBarry Smith for (i = 0; i < m; i++) { 367600e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 367700e6dbe6SBarry Smith olen = 0; 367800e6dbe6SBarry Smith dlen = 0; 367900e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 368015b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 368100e6dbe6SBarry Smith else dlen++; 368200e6dbe6SBarry Smith jj++; 368300e6dbe6SBarry Smith } 368400e6dbe6SBarry Smith olens[i] = olen; 368500e6dbe6SBarry Smith dlens[i] = dlen; 368600e6dbe6SBarry Smith } 3687b6d9b4e0SHong Zhang 36889566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36899566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 369098b658c4SHong Zhang 36919566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36939566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36949566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 36959566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 36969566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3697d5761cdaSHong Zhang 3698d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3699a0ff6018SBarry Smith M = *newmat; 37009566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 370108401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37029566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3703c48de900SBarry Smith /* 3704c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3705c48de900SBarry Smith rather than the slower MatSetValues(). 3706c48de900SBarry Smith */ 3707c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3708c48de900SBarry Smith M->assembled = PETSC_FALSE; 3709a0ff6018SBarry Smith } 3710548ecf4dSHong Zhang 37113b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37139566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 371498b658c4SHong Zhang 371598b658c4SHong Zhang jj = aij->j; 37169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3717a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3718a0ff6018SBarry Smith row = rstart + i; 371900e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 372015b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37219566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37229371c9d4SSatish Balay jj += nz; 37239371c9d4SSatish Balay aa += nz; 3724a0ff6018SBarry Smith } 37259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37269566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3727a0ff6018SBarry Smith 37289566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37299566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3730fee21e36SBarry Smith 37319566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 373298b658c4SHong Zhang 373398b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3734fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37353b00a383SHong Zhang *newmat = M; 3736f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37379566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 373898b658c4SHong Zhang 3739f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 374198b658c4SHong Zhang 3742f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3744bcae8d28SHong Zhang 3745bcae8d28SHong Zhang if (iscol_local) { 3746f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37479566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3748bcae8d28SHong Zhang } 374998b658c4SHong Zhang } 37503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3751a0ff6018SBarry Smith } 3752273d9f13SBarry Smith 3753df40acb1SHong Zhang /* 3754df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3755df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3756df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3757df40acb1SHong Zhang 375811a5261eSBarry Smith This requires a sequential iscol with all indices. 3759df40acb1SHong Zhang */ 3760d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3761d71ae5a4SJacob Faibussowitsch { 3762df40acb1SHong Zhang PetscMPIInt rank, size; 3763df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3764df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3765df40acb1SHong Zhang Mat M, Mreuse; 376698b658c4SHong Zhang MatScalar *aa, *vwork; 3767df40acb1SHong Zhang MPI_Comm comm; 3768df40acb1SHong Zhang Mat_SeqAIJ *aij; 37690b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3770df40acb1SHong Zhang 3771df40acb1SHong Zhang PetscFunctionBegin; 37729566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3775df40acb1SHong Zhang 37760b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37779566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37789566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37790b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 37801c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37810b27a90eSHong Zhang 3782df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37839566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 378428b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37859566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3786df40acb1SHong Zhang } else { 37879566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3788df40acb1SHong Zhang } 3789df40acb1SHong Zhang 3790df40acb1SHong Zhang /* 3791df40acb1SHong Zhang m - number of local rows 3792df40acb1SHong Zhang n - number of columns (same on all processors) 3793df40acb1SHong Zhang rstart - first row in new global matrix generated 3794df40acb1SHong Zhang */ 37959566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 37969566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3797df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 3798df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3799df40acb1SHong Zhang ii = aij->i; 3800df40acb1SHong Zhang jj = aij->j; 3801df40acb1SHong Zhang 3802df40acb1SHong Zhang /* 3803df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3804df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3805df40acb1SHong Zhang */ 3806df40acb1SHong Zhang 3807df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3808df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38099566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3810df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3811df40acb1SHong Zhang nlocal = m; 3812df40acb1SHong Zhang } else { 3813df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3814df40acb1SHong Zhang } 3815df40acb1SHong Zhang } else { 3816df40acb1SHong Zhang nlocal = csize; 3817df40acb1SHong Zhang } 38189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3819df40acb1SHong Zhang rstart = rend - nlocal; 3820aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3821df40acb1SHong Zhang 3822df40acb1SHong Zhang /* next, compute all the lengths */ 38239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3824df40acb1SHong Zhang olens = dlens + m; 3825df40acb1SHong Zhang for (i = 0; i < m; i++) { 3826df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3827df40acb1SHong Zhang olen = 0; 3828df40acb1SHong Zhang dlen = 0; 3829df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3830df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3831df40acb1SHong Zhang else dlen++; 3832df40acb1SHong Zhang jj++; 3833df40acb1SHong Zhang } 3834df40acb1SHong Zhang olens[i] = olen; 3835df40acb1SHong Zhang dlens[i] = dlen; 3836df40acb1SHong Zhang } 38379566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38389566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38399566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38409566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38419566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38429566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3843df40acb1SHong Zhang } else { 3844df40acb1SHong Zhang PetscInt ml, nl; 3845df40acb1SHong Zhang 3846df40acb1SHong Zhang M = *newmat; 38479566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 384808401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38499566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3850df40acb1SHong Zhang /* 3851df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3852df40acb1SHong Zhang rather than the slower MatSetValues(). 3853df40acb1SHong Zhang */ 3854df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3855df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3856df40acb1SHong Zhang } 38579566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 3858df40acb1SHong Zhang aij = (Mat_SeqAIJ *)(Mreuse)->data; 3859df40acb1SHong Zhang ii = aij->i; 3860df40acb1SHong Zhang jj = aij->j; 38612e5835c6SStefano Zampini 38622e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38639566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3864df40acb1SHong Zhang for (i = 0; i < m; i++) { 3865df40acb1SHong Zhang row = rstart + i; 3866df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38679371c9d4SSatish Balay cwork = jj; 38688e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38699371c9d4SSatish Balay vwork = aa; 38708e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38719566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3872df40acb1SHong Zhang } 38739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3874df40acb1SHong Zhang 38759566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38769566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3877df40acb1SHong Zhang *newmat = M; 3878df40acb1SHong Zhang 3879df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3880df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38819566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3883df40acb1SHong Zhang } 38843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3885df40acb1SHong Zhang } 3886df40acb1SHong Zhang 3887ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3888d71ae5a4SJacob Faibussowitsch { 38896a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 3890899cda47SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii; 3891ccd8e176SBarry Smith const PetscInt *JJ; 3892eeb24464SBarry Smith PetscBool nooffprocentries; 38936a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3894ccd8e176SBarry Smith 3895ccd8e176SBarry Smith PetscFunctionBegin; 3896aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]); 3897899cda47SBarry Smith 38989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 38999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3900d0f46423SBarry Smith m = B->rmap->n; 3901d0f46423SBarry Smith cstart = B->cmap->rstart; 3902d0f46423SBarry Smith cend = B->cmap->rend; 3903d0f46423SBarry Smith rstart = B->rmap->rstart; 3904899cda47SBarry Smith 39059566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3906ccd8e176SBarry Smith 390776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39088f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3909ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39108e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 391108401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 391208401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 391308401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3914ecc77c7aSBarry Smith } 391576bd3646SJed Brown } 3916ecc77c7aSBarry Smith 39178f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3918b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39198e3a54c0SPierre Jolivet JJ = PetscSafePointerPlusOffset(J, Ii[i]); 3920ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3921ccd8e176SBarry Smith d = 0; 39220daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39230daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3924ccd8e176SBarry Smith } 3925ccd8e176SBarry Smith d_nnz[i] = d; 3926ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3927ccd8e176SBarry Smith } 39289566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39299566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3930ccd8e176SBarry Smith 39318f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3932ccd8e176SBarry Smith ii = i + rstart; 39338e3a54c0SPierre Jolivet PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES)); 3934ccd8e176SBarry Smith } 3935eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3936eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39379566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39389566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3939eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3940ccd8e176SBarry Smith 39416a3d2595SBarry Smith /* count number of entries below block diagonal */ 39426a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39436a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39446a3d2595SBarry Smith Aij->ld = ld; 39456a3d2595SBarry Smith for (i = 0; i < m; i++) { 39466a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39476a3d2595SBarry Smith j = 0; 3948ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39496a3d2595SBarry Smith ld[i] = j; 3950720a2405SPierre Jolivet if (J) J += nnz; 39516a3d2595SBarry Smith } 39526a3d2595SBarry Smith 39539566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3955ccd8e176SBarry Smith } 3956ccd8e176SBarry Smith 39571eea217eSSatish Balay /*@ 395811a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3959ccd8e176SBarry Smith (the default parallel PETSc format). 3960ccd8e176SBarry Smith 3961d083f849SBarry Smith Collective 3962ccd8e176SBarry Smith 3963ccd8e176SBarry Smith Input Parameters: 3964a1661176SMatthew Knepley + B - the matrix 3965d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3966d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3967ccd8e176SBarry Smith - v - optional values in the matrix 3968ccd8e176SBarry Smith 3969ccd8e176SBarry Smith Level: developer 3970ccd8e176SBarry Smith 397112251496SSatish Balay Notes: 39722ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39732ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 397411a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 397512251496SSatish Balay 39762ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 397712251496SSatish Balay 3978a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3979a4bd8bc0SBarry Smith 3980a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3981a4bd8bc0SBarry Smith 3982a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3983a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3984a4bd8bc0SBarry Smith 398512251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 398612251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3987c5e4d11fSDmitry Karpeev as shown 398827430b45SBarry Smith .vb 398927430b45SBarry Smith 1 0 0 399027430b45SBarry Smith 2 0 3 P0 399127430b45SBarry Smith ------- 399227430b45SBarry Smith 4 5 6 P1 399327430b45SBarry Smith 399427430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 399527430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 399627430b45SBarry Smith j = {0,0,2} [size = 3] 399727430b45SBarry Smith v = {1,2,3} [size = 3] 399827430b45SBarry Smith 399927430b45SBarry Smith Process1 [P1] rows_owned=[2] 400027430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 400127430b45SBarry Smith j = {0,1,2} [size = 3] 400227430b45SBarry Smith v = {4,5,6} [size = 3] 400327430b45SBarry Smith .ve 400412251496SSatish Balay 4005fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4006a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4007ccd8e176SBarry Smith @*/ 4008d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4009d71ae5a4SJacob Faibussowitsch { 4010ccd8e176SBarry Smith PetscFunctionBegin; 4011cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4013ccd8e176SBarry Smith } 4014ccd8e176SBarry Smith 40155d83a8b1SBarry Smith /*@ 401611a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4017273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4018273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 401920f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4020273d9f13SBarry Smith 4021d083f849SBarry Smith Collective 4022273d9f13SBarry Smith 4023273d9f13SBarry Smith Input Parameters: 40241c4f3114SJed Brown + B - the matrix 4025273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4026273d9f13SBarry Smith (same value is used for all local rows) 4027273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4028273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40292ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4030273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40313287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40323287b5eaSJed Brown the diagonal entry even if it is zero. 4033273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4034273d9f13SBarry Smith submatrix (same value is used for all local rows). 4035273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4036273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40372ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4038273d9f13SBarry Smith structure. The size of this array is equal to the number 4039273d9f13SBarry Smith of local rows, i.e 'm'. 4040273d9f13SBarry Smith 40412920cce0SJacob Faibussowitsch Example Usage: 404227430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 404327430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 404427430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 404527430b45SBarry Smith as follows 404627430b45SBarry Smith 404727430b45SBarry Smith .vb 404827430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 404927430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 405027430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 405127430b45SBarry Smith ------------------------------------- 405227430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 405327430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 405427430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 405527430b45SBarry Smith ------------------------------------- 405627430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 405727430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 405827430b45SBarry Smith .ve 405927430b45SBarry Smith 406027430b45SBarry Smith This can be represented as a collection of submatrices as 406127430b45SBarry Smith .vb 406227430b45SBarry Smith A B C 406327430b45SBarry Smith D E F 406427430b45SBarry Smith G H I 406527430b45SBarry Smith .ve 406627430b45SBarry Smith 406727430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 406827430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 406927430b45SBarry Smith 407027430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407127430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 407227430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 407327430b45SBarry Smith 407427430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 407527430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 407627430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 407727430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 407827430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 407927430b45SBarry Smith matrix, ans [DF] as another `MATSEQAIJ` matrix. 408027430b45SBarry Smith 408120f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 408220f4b53cSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 408327430b45SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 408420f4b53cSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 408527430b45SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 408620f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 408727430b45SBarry Smith .vb 408827430b45SBarry Smith proc0 dnz = 2, o_nz = 2 408927430b45SBarry Smith proc1 dnz = 3, o_nz = 2 409027430b45SBarry Smith proc2 dnz = 1, o_nz = 4 409127430b45SBarry Smith .ve 409220f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 409327430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 409427430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 409527430b45SBarry Smith 34 values. 409627430b45SBarry Smith 409720f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 409827430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 409920f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 410027430b45SBarry Smith .vb 410127430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 410227430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 410327430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 410427430b45SBarry Smith .ve 410527430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 410627430b45SBarry Smith hence pre-allocation is perfect. 410727430b45SBarry Smith 410827430b45SBarry Smith Level: intermediate 410927430b45SBarry Smith 411027430b45SBarry Smith Notes: 411149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 411249a6f317SBarry Smith 411327430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41140598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4115651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4116273d9f13SBarry Smith 4117273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4118273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4119273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4120273d9f13SBarry Smith 4121273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4122a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4123a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4124a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4125a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4126a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4127a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4128a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4129a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4130273d9f13SBarry Smith 41312ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4132273d9f13SBarry Smith 413327430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4134aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 413527430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4136aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4137aa95bbe8SBarry Smith 41381cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4139a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4140273d9f13SBarry Smith @*/ 4141d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4142d71ae5a4SJacob Faibussowitsch { 4143273d9f13SBarry Smith PetscFunctionBegin; 41446ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41456ba663aaSJed Brown PetscValidType(B, 1); 4146cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4148273d9f13SBarry Smith } 4149273d9f13SBarry Smith 415058d36128SBarry Smith /*@ 415111a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41528f8f2f0dSBarry Smith CSR format for the local rows. 41532fb0ec9aSBarry Smith 4154d083f849SBarry Smith Collective 41552fb0ec9aSBarry Smith 41562fb0ec9aSBarry Smith Input Parameters: 41572fb0ec9aSBarry Smith + comm - MPI communicator 415811a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41592fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4160d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4161d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4162d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4163d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41645693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41655693b835SJunchao Zhang . j - global column indices 4166f1f2ae84SBarry Smith - a - optional matrix values 41672fb0ec9aSBarry Smith 41682fb0ec9aSBarry Smith Output Parameter: 41692fb0ec9aSBarry Smith . mat - the matrix 417003bfb495SBarry Smith 41712fb0ec9aSBarry Smith Level: intermediate 41722fb0ec9aSBarry Smith 41732fb0ec9aSBarry Smith Notes: 41742ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4175d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4176d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41772fb0ec9aSBarry Smith 41782ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 417912251496SSatish Balay 41805693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4181a4bd8bc0SBarry Smith 41825693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4183a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4184a4bd8bc0SBarry Smith 418512251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4186d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4187c5e4d11fSDmitry Karpeev as shown 41882ef1f0ffSBarry Smith .vb 41892ef1f0ffSBarry Smith 1 0 0 41902ef1f0ffSBarry Smith 2 0 3 P0 41912ef1f0ffSBarry Smith ------- 41922ef1f0ffSBarry Smith 4 5 6 P1 41938f8f2f0dSBarry Smith 41942ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 41952ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 41962ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 41972ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 41982fb0ec9aSBarry Smith 41992ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 42002ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42012ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42022ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42032ef1f0ffSBarry Smith .ve 42042ef1f0ffSBarry Smith 4205d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42065693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42072fb0ec9aSBarry Smith @*/ 4208d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4209d71ae5a4SJacob Faibussowitsch { 42102fb0ec9aSBarry Smith PetscFunctionBegin; 421108401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 421208401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42139566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42149566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42159566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42169566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42179566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42192fb0ec9aSBarry Smith } 42202fb0ec9aSBarry Smith 42218f8f2f0dSBarry Smith /*@ 422211a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42232ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42242ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42256a3d2595SBarry Smith 42266a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42278f8f2f0dSBarry Smith 42288f8f2f0dSBarry Smith Collective 42298f8f2f0dSBarry Smith 42308f8f2f0dSBarry Smith Input Parameters: 42318f8f2f0dSBarry Smith + mat - the matrix 423211a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42338f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 423411a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42358f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 423611a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 423711a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42388f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42398f8f2f0dSBarry Smith . J - column indices 42408f8f2f0dSBarry Smith - v - matrix values 42418f8f2f0dSBarry Smith 42422ef1f0ffSBarry Smith Level: deprecated 42438f8f2f0dSBarry Smith 42441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4245a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42468f8f2f0dSBarry Smith @*/ 4247d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4248d71ae5a4SJacob Faibussowitsch { 42496a3d2595SBarry Smith PetscInt nnz, i; 42508f8f2f0dSBarry Smith PetscBool nooffprocentries; 42518f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4252fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4253fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42548f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42556a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42566a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42578f8f2f0dSBarry Smith 42588f8f2f0dSBarry Smith PetscFunctionBegin; 4259aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 426008401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 426108401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 426208401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42638f8f2f0dSBarry Smith 42649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42668f8f2f0dSBarry Smith 42678f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42684c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42694c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42704c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42714c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42724c17f1ccSBarry Smith } 42734c17f1ccSBarry Smith } 42748f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42758f8f2f0dSBarry Smith Iii = Ii[i]; 42768f8f2f0dSBarry Smith ldi = ld[i]; 42778f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42789566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42799566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42809566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42818f8f2f0dSBarry Smith ad += md; 42828f8f2f0dSBarry Smith ao += nnz - md; 42838f8f2f0dSBarry Smith } 42848f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42858f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42889566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42899566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42909566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42938f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42958f8f2f0dSBarry Smith } 42968f8f2f0dSBarry Smith 42976a3d2595SBarry Smith /*@ 429811a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 42996a3d2595SBarry Smith 43006a3d2595SBarry Smith Collective 43016a3d2595SBarry Smith 43026a3d2595SBarry Smith Input Parameters: 43036a3d2595SBarry Smith + mat - the matrix 43046a3d2595SBarry Smith - v - matrix values, stored by row 43056a3d2595SBarry Smith 43066a3d2595SBarry Smith Level: intermediate 43076a3d2595SBarry Smith 4308a4bd8bc0SBarry Smith Notes: 43096a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43106a3d2595SBarry Smith 4311a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4312a4bd8bc0SBarry Smith 43131cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4314a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43156a3d2595SBarry Smith @*/ 4316d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4317d71ae5a4SJacob Faibussowitsch { 43186a3d2595SBarry Smith PetscInt nnz, i, m; 43196a3d2595SBarry Smith PetscBool nooffprocentries; 43206a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43216a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43226a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43236a3d2595SBarry Smith PetscScalar *ad, *ao; 43246a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43256a3d2595SBarry Smith PetscInt ldi, Iii, md; 43266a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43276a3d2595SBarry Smith 43286a3d2595SBarry Smith PetscFunctionBegin; 43296a3d2595SBarry Smith m = mat->rmap->n; 43306a3d2595SBarry Smith 43316a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43326a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43336a3d2595SBarry Smith Iii = 0; 43346a3d2595SBarry Smith for (i = 0; i < m; i++) { 43356a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43366a3d2595SBarry Smith ldi = ld[i]; 43376a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43386a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43396a3d2595SBarry Smith ad += md; 4340810441c8SPierre Jolivet if (ao) { 4341810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4342810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43436a3d2595SBarry Smith ao += nnz - md; 4344810441c8SPierre Jolivet } 43456a3d2595SBarry Smith Iii += nnz; 43466a3d2595SBarry Smith } 43476a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43486a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43496a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43506a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43516a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43526a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43536a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43546a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43556a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43566a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43586a3d2595SBarry Smith } 43596a3d2595SBarry Smith 43605d83a8b1SBarry Smith /*@ 436111a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4362273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4363273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43642ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4365273d9f13SBarry Smith 4366d083f849SBarry Smith Collective 4367273d9f13SBarry Smith 4368273d9f13SBarry Smith Input Parameters: 4369273d9f13SBarry Smith + comm - MPI communicator 437011a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4371273d9f13SBarry Smith This value should be the same as the local size used in creating the 4372273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4373273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 437445f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4375273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 437611a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 437711a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4378273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4379273d9f13SBarry Smith (same value is used for all local rows) 4380273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4381273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43822ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4383273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4384273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4385273d9f13SBarry Smith submatrix (same value is used for all local rows). 4386273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4387273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43882ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4389273d9f13SBarry Smith structure. The size of this array is equal to the number 4390273d9f13SBarry Smith of local rows, i.e 'm'. 4391273d9f13SBarry Smith 4392273d9f13SBarry Smith Output Parameter: 4393273d9f13SBarry Smith . A - the matrix 4394273d9f13SBarry Smith 439527430b45SBarry Smith Options Database Keys: 439627430b45SBarry Smith + -mat_no_inode - Do not use inodes 439727430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 439827430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4399727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4400727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 440127430b45SBarry Smith 44022ef1f0ffSBarry Smith Level: intermediate 44032ef1f0ffSBarry Smith 440427430b45SBarry Smith Notes: 440577433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4406f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 440711a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4408175b88e8SBarry Smith 440949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 441049a6f317SBarry Smith 44112ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44122ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4413273d9f13SBarry Smith storage requirements for this matrix. 4414273d9f13SBarry Smith 441511a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4416273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4417273d9f13SBarry Smith that argument. 4418273d9f13SBarry Smith 4419727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4420727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4421727bdf9bSBarry Smith 4422273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4423273d9f13SBarry Smith (possibly both). 4424273d9f13SBarry Smith 442533a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4426727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4427727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4428727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 442933a7c187SSatish Balay values corresponding to [m x N] submatrix. 4430273d9f13SBarry Smith 443133a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 443233a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4433df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 443433a7c187SSatish Balay 443533a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 443633a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 443733a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 443833a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 443933a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 444033a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 444133a7c187SSatish Balay illustrates this concept. 444233a7c187SSatish Balay 444333a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 444433a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 444533a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 444633a7c187SSatish Balay local matrix (a rectangular submatrix). 4447273d9f13SBarry Smith 44482ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4449273d9f13SBarry Smith 445097d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44512ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4452da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4453da57b5cdSKarl Rupp .vb 44542ef1f0ffSBarry Smith MatCreate(..., &A); 44552ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44562ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44572ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4458da57b5cdSKarl Rupp .ve 445997d05335SKris Buschelman 4460273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4461273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4462273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4463273d9f13SBarry Smith 44642920cce0SJacob Faibussowitsch Example Usage: 4465273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4466273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4467273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4468efc377ccSKarl Rupp as follows 4469273d9f13SBarry Smith 4470273d9f13SBarry Smith .vb 4471273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4472273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4473273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4474273d9f13SBarry Smith ------------------------------------- 4475273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4476273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4477273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4478273d9f13SBarry Smith ------------------------------------- 4479273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4480273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4481273d9f13SBarry Smith .ve 4482273d9f13SBarry Smith 4483da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4484273d9f13SBarry Smith 4485273d9f13SBarry Smith .vb 4486273d9f13SBarry Smith A B C 4487273d9f13SBarry Smith D E F 4488273d9f13SBarry Smith G H I 4489273d9f13SBarry Smith .ve 4490273d9f13SBarry Smith 4491273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4492273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4493273d9f13SBarry Smith 4494273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4495273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4496273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4497273d9f13SBarry Smith 4498273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4499273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4500273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4501273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 450227430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 4503273d9f13SBarry Smith matrix, ans [DF] as another SeqAIJ matrix. 4504273d9f13SBarry Smith 45052ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45062ef1f0ffSBarry Smith allocated for every row of the local diagonal submatrix, and `o_nz` 4507273d9f13SBarry Smith storage locations are allocated for every row of the OFF-DIAGONAL submat. 45082ef1f0ffSBarry Smith One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local 4509273d9f13SBarry Smith rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45102ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4511273d9f13SBarry Smith .vb 451227430b45SBarry Smith proc0 dnz = 2, o_nz = 2 451327430b45SBarry Smith proc1 dnz = 3, o_nz = 2 451427430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4515273d9f13SBarry Smith .ve 45162ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4517273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4518273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4519273d9f13SBarry Smith 34 values. 4520273d9f13SBarry Smith 45212ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4522a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4523da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4524273d9f13SBarry Smith .vb 452527430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 452627430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 452727430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4528273d9f13SBarry Smith .ve 4529273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4530273d9f13SBarry Smith hence pre-allocation is perfect. 4531273d9f13SBarry Smith 45321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4533727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4534727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4535273d9f13SBarry Smith @*/ 4536d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4537d71ae5a4SJacob Faibussowitsch { 4538b1d57f15SBarry Smith PetscMPIInt size; 4539273d9f13SBarry Smith 4540273d9f13SBarry Smith PetscFunctionBegin; 45419566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45429566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4544273d9f13SBarry Smith if (size > 1) { 45459566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45469566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4547273d9f13SBarry Smith } else { 45489566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4550273d9f13SBarry Smith } 45513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4552273d9f13SBarry Smith } 4553195d93cdSBarry Smith 45540b98dbb4SBarry Smith /*MC 45550b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix 45560b98dbb4SBarry Smith 45570b98dbb4SBarry Smith Synopsis: 45580b98dbb4SBarry Smith MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45590b98dbb4SBarry Smith 45600b98dbb4SBarry Smith Not Collective 45610b98dbb4SBarry Smith 45620b98dbb4SBarry Smith Input Parameter: 45630b98dbb4SBarry Smith . A - the `MATMPIAIJ` matrix 45640b98dbb4SBarry Smith 45650b98dbb4SBarry Smith Output Parameters: 45660b98dbb4SBarry Smith + Ad - the diagonal portion of the matrix 45674cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45682ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45690b98dbb4SBarry Smith - ierr - error code 45700b98dbb4SBarry Smith 45710b98dbb4SBarry Smith Level: advanced 45720b98dbb4SBarry Smith 45730b98dbb4SBarry Smith Note: 45740b98dbb4SBarry Smith Use `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45750b98dbb4SBarry Smith 45761cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()` 45770b98dbb4SBarry Smith M*/ 45780b98dbb4SBarry Smith 45790b98dbb4SBarry Smith /*MC 45800b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap` 45810b98dbb4SBarry Smith 45820b98dbb4SBarry Smith Synopsis: 45830b98dbb4SBarry Smith MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr) 45840b98dbb4SBarry Smith 45850b98dbb4SBarry Smith Not Collective 45860b98dbb4SBarry Smith 45870b98dbb4SBarry Smith Input Parameters: 45880b98dbb4SBarry Smith + A - the `MATMPIAIJ` matrix 45890b98dbb4SBarry Smith . Ad - the diagonal portion of the matrix 45904cf0e950SBarry Smith . Ao - the off-diagonal portion of the matrix 45912ef1f0ffSBarry Smith . colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 45920b98dbb4SBarry Smith - ierr - error code 45930b98dbb4SBarry Smith 45940b98dbb4SBarry Smith Level: advanced 45950b98dbb4SBarry Smith 45961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()` 45970b98dbb4SBarry Smith M*/ 45980b98dbb4SBarry Smith 4599127ca0efSMatthew Knepley /*@C 46000ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4601127ca0efSMatthew Knepley 46022ef1f0ffSBarry Smith Not Collective 4603127ca0efSMatthew Knepley 4604127ca0efSMatthew Knepley Input Parameter: 460511a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4606127ca0efSMatthew Knepley 4607127ca0efSMatthew Knepley Output Parameters: 460811a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 460911a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46102ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4611127ca0efSMatthew Knepley 46120ab4885dSBarry Smith Level: intermediate 46130ab4885dSBarry Smith 461411a5261eSBarry Smith Note: 46152ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46162ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46172ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4618127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4619127ca0efSMatthew Knepley 4620fe59aa6dSJacob Faibussowitsch Fortran Notes: 46210ab4885dSBarry Smith `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()` 4622127ca0efSMatthew Knepley 4623fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4624127ca0efSMatthew Knepley @*/ 4625d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4626d71ae5a4SJacob Faibussowitsch { 4627195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 462804cf37c7SBarry Smith PetscBool flg; 4629b1d57f15SBarry Smith 4630195d93cdSBarry Smith PetscFunctionBegin; 46319566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 463228b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 463321e72a00SBarry Smith if (Ad) *Ad = a->A; 463421e72a00SBarry Smith if (Ao) *Ao = a->B; 463521e72a00SBarry Smith if (colmap) *colmap = a->garray; 46363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4637195d93cdSBarry Smith } 4638a2243be0SBarry Smith 4639d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4640d71ae5a4SJacob Faibussowitsch { 4641110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46429b8102ccSHong Zhang PetscInt *indx; 4643110bb6e1SHong Zhang PetscScalar *values; 4644421ddf4dSJunchao Zhang MatType rootType; 46459b8102ccSHong Zhang 46469b8102ccSHong Zhang PetscFunctionBegin; 46479566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4648110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4649110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4650110bb6e1SHong Zhang 465148a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4652a22543b6SHong Zhang /* Check sum(n) = N */ 46531c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 465408401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4655a22543b6SHong Zhang 46569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46579b8102ccSHong Zhang rstart -= m; 46589b8102ccSHong Zhang 4659d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46609b8102ccSHong Zhang for (i = 0; i < m; i++) { 46619566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46629566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46639566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46649b8102ccSHong Zhang } 46659b8102ccSHong Zhang 46669566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46679566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46689566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46699566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46709566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46719566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46739566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4674d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46759566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46769b8102ccSHong Zhang } 46779b8102ccSHong Zhang 4678110bb6e1SHong Zhang /* numeric phase */ 46799566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46809b8102ccSHong Zhang for (i = 0; i < m; i++) { 46819566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46829b8102ccSHong Zhang Ii = i + rstart; 46839566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46849566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46859b8102ccSHong Zhang } 46869566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46879566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4689c5d6d63eSBarry Smith } 4690c5d6d63eSBarry Smith 4691d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data) 4692d71ae5a4SJacob Faibussowitsch { 46936718818eSStefano Zampini Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data; 469451a7d1a8SHong Zhang 469551a7d1a8SHong Zhang PetscFunctionBegin; 46963ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46979566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46989566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 46999566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 47009566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 47019566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 47029566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 47039566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 47049566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 47059566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47069566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47079566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47089566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47099566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47109566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 471251a7d1a8SHong Zhang } 471351a7d1a8SHong Zhang 4714c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4715c6db04a5SJed Brown #include <petscbt.h> 47164ebed01fSBarry Smith 4717d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4718d71ae5a4SJacob Faibussowitsch { 4719ce94432eSBarry Smith MPI_Comm comm; 472055d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4721b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 4722a2ea699eSBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj; 4723b1d57f15SBarry Smith PetscInt proc, m; 4724b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 4725b1d57f15SBarry Smith PetscInt k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4726b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 472755d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 472855d1abb9SHong Zhang MPI_Status *status; 4729fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4730dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 473155d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4732776b82aeSLisandro Dalcin PetscContainer container; 473355d1abb9SHong Zhang 473455d1abb9SHong Zhang PetscFunctionBegin; 47359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47369566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47373c2c1871SHong Zhang 47389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 474055d1abb9SHong Zhang 47419566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 474228b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47439566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4745fff043a9SJunchao Zhang aa = a_a; 4746bf0cc555SLisandro Dalcin 474755d1abb9SHong Zhang bi = merge->bi; 474855d1abb9SHong Zhang bj = merge->bj; 474955d1abb9SHong Zhang buf_ri = merge->buf_ri; 475055d1abb9SHong Zhang buf_rj = merge->buf_rj; 475155d1abb9SHong Zhang 47529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47537a2fc3feSBarry Smith owners = merge->rowmap->range; 475455d1abb9SHong Zhang len_s = merge->len_s; 475555d1abb9SHong Zhang 475655d1abb9SHong Zhang /* send and recv matrix values */ 47579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47589566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 475955d1abb9SHong Zhang 47609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 476155d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 476255d1abb9SHong Zhang if (!len_s[proc]) continue; 476355d1abb9SHong Zhang i = owners[proc]; 47649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 476555d1abb9SHong Zhang k++; 476655d1abb9SHong Zhang } 476755d1abb9SHong Zhang 47689566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47699566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47709566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 477155d1abb9SHong Zhang 47729566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47739566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 477455d1abb9SHong Zhang 477555d1abb9SHong Zhang /* insert mat values of mpimat */ 47769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47779566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 477855d1abb9SHong Zhang 477955d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 478055d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4781f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 478255d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4783a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 478455d1abb9SHong Zhang } 478555d1abb9SHong Zhang 478655d1abb9SHong Zhang /* set values of ba */ 47877a2fc3feSBarry Smith m = merge->rowmap->n; 478855d1abb9SHong Zhang for (i = 0; i < m; i++) { 478955d1abb9SHong Zhang arow = owners[rank] + i; 479055d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 479155d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47929566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 479355d1abb9SHong Zhang 479455d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 479555d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 479655d1abb9SHong Zhang aj = a->j + ai[arow]; 4797fff043a9SJunchao Zhang aa = a_a + ai[arow]; 479855d1abb9SHong Zhang nextaj = 0; 479955d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 480055d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 480155d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 480255d1abb9SHong Zhang } 480355d1abb9SHong Zhang } 480455d1abb9SHong Zhang 480555d1abb9SHong Zhang /* add received vals into ba */ 480655d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 480755d1abb9SHong Zhang /* i-th row */ 480855d1abb9SHong Zhang if (i == *nextrow[k]) { 480955d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4810f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4811f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 481255d1abb9SHong Zhang nextaj = 0; 481355d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 481455d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 481555d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 481655d1abb9SHong Zhang } 481755d1abb9SHong Zhang } 48189371c9d4SSatish Balay nextrow[k]++; 48199371c9d4SSatish Balay nextai[k]++; 482055d1abb9SHong Zhang } 482155d1abb9SHong Zhang } 48229566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 482355d1abb9SHong Zhang } 48249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 482755d1abb9SHong Zhang 48289566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48299566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48309566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48319566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48329566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 483455d1abb9SHong Zhang } 483538f152feSBarry Smith 4836d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4837d71ae5a4SJacob Faibussowitsch { 483855a3bba9SHong Zhang Mat B_mpi; 4839c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4840b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4841b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4842d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 4843a2f3521dSMark F. Adams PetscInt len, proc, *dnz, *onz, bs, cbs; 4844c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4845b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 484655d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 484758cb9c82SHong Zhang MPI_Status *status; 48480298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4849be0fcf8dSHong Zhang PetscBT lnkbt; 485051a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4851776b82aeSLisandro Dalcin PetscContainer container; 485202c68681SHong Zhang 4853e5f2cdd8SHong Zhang PetscFunctionBegin; 48549566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48553c2c1871SHong Zhang 485638f152feSBarry Smith /* make sure it is a PETSc comm */ 48579566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 486055d1abb9SHong Zhang 48619566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4863e5f2cdd8SHong Zhang 48646abd8857SHong Zhang /* determine row ownership */ 48659566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48679566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48689566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 487255d1abb9SHong Zhang 48737a2fc3feSBarry Smith m = merge->rowmap->n; 48747a2fc3feSBarry Smith owners = merge->rowmap->range; 48756abd8857SHong Zhang 48766abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48773e06a4e6SHong Zhang len_s = merge->len_s; 487851a7d1a8SHong Zhang 48792257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4880c2234fe3SHong Zhang merge->nsend = 0; 4881409913e3SHong Zhang for (proc = 0; proc < size; proc++) { 48822257cef7SHong Zhang len_si[proc] = 0; 48833e06a4e6SHong Zhang if (proc == rank) { 48846abd8857SHong Zhang len_s[proc] = 0; 48853e06a4e6SHong Zhang } else { 488602c68681SHong Zhang len_si[proc] = owners[proc + 1] - owners[proc] + 1; 48873e06a4e6SHong Zhang len_s[proc] = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */ 48883e06a4e6SHong Zhang } 48893e06a4e6SHong Zhang if (len_s[proc]) { 4890c2234fe3SHong Zhang merge->nsend++; 48912257cef7SHong Zhang nrows = 0; 48922257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48932257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48942257cef7SHong Zhang } 48952257cef7SHong Zhang len_si[proc] = 2 * (nrows + 1); 48962257cef7SHong Zhang len += len_si[proc]; 4897409913e3SHong Zhang } 489858cb9c82SHong Zhang } 4899409913e3SHong Zhang 49002257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 49019566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 49029566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4903671beff6SHong Zhang 49043e06a4e6SHong Zhang /* post the Irecv of j-structure */ 49059566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49069566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 490702c68681SHong Zhang 49083e06a4e6SHong Zhang /* post the Isend of j-structure */ 49099566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49103e06a4e6SHong Zhang 49112257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 4912409913e3SHong Zhang if (!len_s[proc]) continue; 491302c68681SHong Zhang i = owners[proc]; 49149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 491551a7d1a8SHong Zhang k++; 491651a7d1a8SHong Zhang } 491751a7d1a8SHong Zhang 49183e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49199566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49209566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 492102c68681SHong Zhang 492202c68681SHong Zhang /* send and recv i-structure */ 49239566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49249566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 492502c68681SHong Zhang 49269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49273e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49282257cef7SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 492902c68681SHong Zhang if (!len_s[proc]) continue; 49303e06a4e6SHong Zhang /* form outgoing message for i-structure: 49313e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49323e06a4e6SHong Zhang [1:nrows]: row index (global) 49333e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49343e06a4e6SHong Zhang */ 49352257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49363e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49373e06a4e6SHong Zhang buf_si[0] = nrows; 49383e06a4e6SHong Zhang buf_si_i[0] = 0; 49393e06a4e6SHong Zhang nrows = 0; 49403e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49413e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49423e06a4e6SHong Zhang if (anzi) { 49433e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49443e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49453e06a4e6SHong Zhang nrows++; 49463e06a4e6SHong Zhang } 49473e06a4e6SHong Zhang } 49489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 494902c68681SHong Zhang k++; 49502257cef7SHong Zhang buf_si += len_si[proc]; 495102c68681SHong Zhang } 49522257cef7SHong Zhang 49539566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49549566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 495502c68681SHong Zhang 49569566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 495748a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49583e06a4e6SHong Zhang 49599566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49609566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49619566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49629566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49639566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49649566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49659566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 496658cb9c82SHong Zhang 4967bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 496858cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 497058cb9c82SHong Zhang bi[0] = 0; 497158cb9c82SHong Zhang 4972be0fcf8dSHong Zhang /* create and initialize a linked list */ 4973be0fcf8dSHong Zhang nlnk = N + 1; 49749566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 497558cb9c82SHong Zhang 4976bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4977bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49789566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49792205254eSKarl Rupp 498058cb9c82SHong Zhang current_space = free_space; 498158cb9c82SHong Zhang 4982bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49839566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49841d79065fSBarry Smith 49853e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49862257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49873e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49883e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4989a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49903e06a4e6SHong Zhang } 49912257cef7SHong Zhang 4992d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4993bcc1bcd5SHong Zhang len = 0; 499458cb9c82SHong Zhang for (i = 0; i < m; i++) { 499558cb9c82SHong Zhang bnzi = 0; 499658cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 499758cb9c82SHong Zhang arow = owners[rank] + i; 499858cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 499958cb9c82SHong Zhang aj = a->j + ai[arow]; 50009566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 500158cb9c82SHong Zhang bnzi += nlnk; 500258cb9c82SHong Zhang /* add received col data into lnk */ 500351a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 500455d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 50053e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50063e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50079566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50083e06a4e6SHong Zhang bnzi += nlnk; 50099371c9d4SSatish Balay nextrow[k]++; 50109371c9d4SSatish Balay nextai[k]++; 50113e06a4e6SHong Zhang } 501258cb9c82SHong Zhang } 5013bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 501458cb9c82SHong Zhang 501558cb9c82SHong Zhang /* if free space is not available, make more free space */ 501648a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 501758cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50189566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50199566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5020bcc1bcd5SHong Zhang 502158cb9c82SHong Zhang current_space->array += bnzi; 502258cb9c82SHong Zhang current_space->local_used += bnzi; 502358cb9c82SHong Zhang current_space->local_remaining -= bnzi; 502458cb9c82SHong Zhang 502558cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 502658cb9c82SHong Zhang } 5027bcc1bcd5SHong Zhang 50289566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5029bcc1bcd5SHong Zhang 50309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50319566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50329566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5033409913e3SHong Zhang 5034bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50359566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50369566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 503754b84b50SHong Zhang if (n == PETSC_DECIDE) { 50389566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 503954b84b50SHong Zhang } else { 50409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 504154b84b50SHong Zhang } 50429566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50439566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50449566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5045d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50469566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 504758cb9c82SHong Zhang 504890431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50496abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5050affca5deSHong Zhang merge->bi = bi; 5051affca5deSHong Zhang merge->bj = bj; 505202c68681SHong Zhang merge->buf_ri = buf_ri; 505302c68681SHong Zhang merge->buf_rj = buf_rj; 50540298fd71SBarry Smith merge->coi = NULL; 50550298fd71SBarry Smith merge->coj = NULL; 50560298fd71SBarry Smith merge->owners_co = NULL; 5057affca5deSHong Zhang 50589566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5059bf0cc555SLisandro Dalcin 5060affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50619566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50629566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 50639566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50649566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50659566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5066affca5deSHong Zhang *mpimat = B_mpi; 506738f152feSBarry Smith 50689566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5070e5f2cdd8SHong Zhang } 507125616d81SHong Zhang 5072cc4c1da9SBarry Smith /*@ 507311a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5074d4036a1aSHong Zhang matrices from each processor 5075d4036a1aSHong Zhang 5076d083f849SBarry Smith Collective 5077d4036a1aSHong Zhang 5078d4036a1aSHong Zhang Input Parameters: 5079d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5080d4036a1aSHong Zhang . seqmat - the input sequential matrices 508111a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 508211a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 508311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5084d4036a1aSHong Zhang 5085d4036a1aSHong Zhang Output Parameter: 5086d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5087d4036a1aSHong Zhang 5088d4036a1aSHong Zhang Level: advanced 5089d4036a1aSHong Zhang 509011a5261eSBarry Smith Note: 5091d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5092d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5093b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 50942ef1f0ffSBarry Smith 50951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5096d4036a1aSHong Zhang @*/ 5097d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5098d71ae5a4SJacob Faibussowitsch { 50997e63b356SHong Zhang PetscMPIInt size; 510055d1abb9SHong Zhang 510155d1abb9SHong Zhang PetscFunctionBegin; 51029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 51037e63b356SHong Zhang if (size == 1) { 51049566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 51057e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51069566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51077e63b356SHong Zhang } else { 51089566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51097e63b356SHong Zhang } 51109566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51127e63b356SHong Zhang } 51139566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 511448a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51159566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51169566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 511855d1abb9SHong Zhang } 51194ebed01fSBarry Smith 5120bc08b0f1SBarry Smith /*@ 51212920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51228a9c020eSBarry Smith 51238a9c020eSBarry Smith Not Collective 51248a9c020eSBarry Smith 51252fe279fdSBarry Smith Input Parameter: 512620f4b53cSBarry Smith . A - the matrix 51278a9c020eSBarry Smith 51288a9c020eSBarry Smith Output Parameter: 51298a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51308a9c020eSBarry Smith 51318a9c020eSBarry Smith Level: developer 51328a9c020eSBarry Smith 51338a9c020eSBarry Smith Notes: 51342920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51352920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51362920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51372920cce0SJacob Faibussowitsch 513811a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51398a9c020eSBarry Smith 51402920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51412920cce0SJacob Faibussowitsch 514211a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51438a9c020eSBarry Smith 51441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51458a9c020eSBarry Smith @*/ 5146d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5147d71ae5a4SJacob Faibussowitsch { 51488a9c020eSBarry Smith PetscBool mpi; 51498a9c020eSBarry Smith 51508a9c020eSBarry Smith PetscFunctionBegin; 51518a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51528a9c020eSBarry Smith if (mpi) { 51538a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51548a9c020eSBarry Smith } else { 51558a9c020eSBarry Smith *A_loc = A; 51568a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51578a9c020eSBarry Smith } 51583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51598a9c020eSBarry Smith } 51608a9c020eSBarry Smith 51618a9c020eSBarry Smith /*@ 51622920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 516325616d81SHong Zhang 516432fba14fSHong Zhang Not Collective 516525616d81SHong Zhang 516625616d81SHong Zhang Input Parameters: 516725616d81SHong Zhang + A - the matrix 516811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 516925616d81SHong Zhang 517025616d81SHong Zhang Output Parameter: 517125616d81SHong Zhang . A_loc - the local sequential matrix generated 517225616d81SHong Zhang 517325616d81SHong Zhang Level: developer 517425616d81SHong Zhang 517577c65a98SStefano Zampini Notes: 51762920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51772920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51782920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51792920cce0SJacob Faibussowitsch 518011a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51818a9c020eSBarry Smith 51822920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51832920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51842920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51852920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 518677c65a98SStefano Zampini 51871cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 518825616d81SHong Zhang @*/ 5189d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5190d71ae5a4SJacob Faibussowitsch { 519101b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5192b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5193b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5194ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5195ce496241SStefano Zampini PetscScalar *ca, *cam; 519677c65a98SStefano Zampini PetscMPIInt size; 5197d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51985a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 51998661ff28SBarry Smith PetscBool match; 520025616d81SHong Zhang 520125616d81SHong Zhang PetscFunctionBegin; 52029566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 520328b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 52049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 520577c65a98SStefano Zampini if (size == 1) { 520677c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52079566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 520877c65a98SStefano Zampini *A_loc = mpimat->A; 520977c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52109566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 521177c65a98SStefano Zampini } 52123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 521377c65a98SStefano Zampini } 521470a9ba44SHong Zhang 52159566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5216f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5217f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 52189371c9d4SSatish Balay ai = a->i; 52199371c9d4SSatish Balay aj = a->j; 52209371c9d4SSatish Balay bi = b->i; 52219371c9d4SSatish Balay bj = b->j; 52229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5224ce496241SStefano Zampini aa = aav; 5225ce496241SStefano Zampini ba = bav; 522601b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5228dea91ad1SHong Zhang ci[0] = 0; 5229ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5232dea91ad1SHong Zhang k = 0; 523301b7ae99SHong Zhang for (i = 0; i < am; i++) { 52345a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52355a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 523601b7ae99SHong Zhang /* off-diagonal portion of A */ 52375a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52385a7d977cSHong Zhang col = cmap[*bj]; 52395a7d977cSHong Zhang if (col >= cstart) break; 52409371c9d4SSatish Balay cj[k] = col; 52419371c9d4SSatish Balay bj++; 52425a7d977cSHong Zhang ca[k++] = *ba++; 52435a7d977cSHong Zhang } 52445a7d977cSHong Zhang /* diagonal portion of A */ 52455a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52465a7d977cSHong Zhang cj[k] = cstart + *aj++; 52475a7d977cSHong Zhang ca[k++] = *aa++; 52485a7d977cSHong Zhang } 52495a7d977cSHong Zhang /* off-diagonal portion of A */ 52505a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52515a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52525a7d977cSHong Zhang ca[k++] = *ba++; 52535a7d977cSHong Zhang } 525425616d81SHong Zhang } 5255dea91ad1SHong Zhang /* put together the new matrix */ 52569566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5257dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5258dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5259dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5260e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5261e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5262dea91ad1SHong Zhang mat->nonew = 0; 52635a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52645a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5265fff043a9SJunchao Zhang ci = mat->i; 5266fff043a9SJunchao Zhang cj = mat->j; 52679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52685a7d977cSHong Zhang for (i = 0; i < am; i++) { 52695a7d977cSHong Zhang /* off-diagonal portion of A */ 52705a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52715a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52725a7d977cSHong Zhang col = cmap[*bj]; 52735a7d977cSHong Zhang if (col >= cstart) break; 52749371c9d4SSatish Balay *cam++ = *ba++; 52759371c9d4SSatish Balay bj++; 52765a7d977cSHong Zhang } 52775a7d977cSHong Zhang /* diagonal portion of A */ 5278ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5279a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52805a7d977cSHong Zhang /* off-diagonal portion of A */ 5281f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52829371c9d4SSatish Balay *cam++ = *ba++; 52839371c9d4SSatish Balay bj++; 5284f33d1a9aSHong Zhang } 52855a7d977cSHong Zhang } 52869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 528798921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52909566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 529225616d81SHong Zhang } 529325616d81SHong Zhang 5294ed502f03SStefano Zampini /*@ 529511a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52964cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5297ed502f03SStefano Zampini 5298ed502f03SStefano Zampini Not Collective 5299ed502f03SStefano Zampini 5300ed502f03SStefano Zampini Input Parameters: 5301ed502f03SStefano Zampini + A - the matrix 530211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5303ed502f03SStefano Zampini 5304d8d19677SJose E. Roman Output Parameters: 53052ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5306ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5307ed502f03SStefano Zampini 5308ed502f03SStefano Zampini Level: developer 5309ed502f03SStefano Zampini 531011a5261eSBarry Smith Note: 53112ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53124cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5313ed502f03SStefano Zampini 53141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5315ed502f03SStefano Zampini @*/ 5316d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5317d71ae5a4SJacob Faibussowitsch { 5318ed502f03SStefano Zampini Mat Ao, Ad; 5319ed502f03SStefano Zampini const PetscInt *cmap; 5320ed502f03SStefano Zampini PetscMPIInt size; 5321ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5322ed502f03SStefano Zampini 5323ed502f03SStefano Zampini PetscFunctionBegin; 53249566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5326ed502f03SStefano Zampini if (size == 1) { 5327ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53289566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5329ed502f03SStefano Zampini *A_loc = Ad; 5330ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53319566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5332ed502f03SStefano Zampini } 53339566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5335ed502f03SStefano Zampini } 53369566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53379566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5338ed502f03SStefano Zampini if (f) { 53399566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5340ed502f03SStefano Zampini } else { 5341ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5342ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5343ed502f03SStefano Zampini Mat_SeqAIJ *c; 5344ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5345ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5346ed502f03SStefano Zampini PetscInt *ci, *cj; 5347ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5348ed502f03SStefano Zampini PetscScalar *ca; 5349ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5350ed502f03SStefano Zampini 53519566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53529566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5355ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5356ed502f03SStefano Zampini PetscInt k; 53579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5360ed502f03SStefano Zampini ci[0] = 0; 5361ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5362ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5363ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5364ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5365ed502f03SStefano Zampini /* diagonal portion of A */ 5366ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5367ed502f03SStefano Zampini cj[k] = *aj++; 5368ed502f03SStefano Zampini ca[k] = *aa++; 5369ed502f03SStefano Zampini } 5370ed502f03SStefano Zampini /* off-diagonal portion of A */ 5371ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5372ed502f03SStefano Zampini cj[k] = dn + *bj++; 5373ed502f03SStefano Zampini ca[k] = *ba++; 5374ed502f03SStefano Zampini } 5375ed502f03SStefano Zampini } 5376ed502f03SStefano Zampini /* put together the new matrix */ 53779566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5378ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5379ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5380ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5381ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5382ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5383ed502f03SStefano Zampini c->nonew = 0; 53849566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5385ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5387ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5388ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5389ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5390ed502f03SStefano Zampini /* diagonal portion of A */ 5391ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5392ed502f03SStefano Zampini /* off-diagonal portion of A */ 5393ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5394ed502f03SStefano Zampini } 53959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 539698921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5399ed502f03SStefano Zampini if (glob) { 5400ed502f03SStefano Zampini PetscInt cst, *gidx; 5401ed502f03SStefano Zampini 54029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 54039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5404ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5405ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54069566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5407ed502f03SStefano Zampini } 5408ed502f03SStefano Zampini } 54099566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5411ed502f03SStefano Zampini } 5412ed502f03SStefano Zampini 541332fba14fSHong Zhang /*@C 541411a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 541532fba14fSHong Zhang 541632fba14fSHong Zhang Not Collective 541732fba14fSHong Zhang 541832fba14fSHong Zhang Input Parameters: 541932fba14fSHong Zhang + A - the matrix 542011a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 542120f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 542220f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 542332fba14fSHong Zhang 542432fba14fSHong Zhang Output Parameter: 542532fba14fSHong Zhang . A_loc - the local sequential matrix generated 542632fba14fSHong Zhang 542732fba14fSHong Zhang Level: developer 542832fba14fSHong Zhang 54291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 543032fba14fSHong Zhang @*/ 5431d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5432d71ae5a4SJacob Faibussowitsch { 543332fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 543432fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 543532fba14fSHong Zhang IS isrowa, iscola; 543632fba14fSHong Zhang Mat *aloc; 54374a2b5492SBarry Smith PetscBool match; 543832fba14fSHong Zhang 543932fba14fSHong Zhang PetscFunctionBegin; 54409566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 544128b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54429566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 544332fba14fSHong Zhang if (!row) { 54449371c9d4SSatish Balay start = A->rmap->rstart; 54459371c9d4SSatish Balay end = A->rmap->rend; 54469566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 544732fba14fSHong Zhang } else { 544832fba14fSHong Zhang isrowa = *row; 544932fba14fSHong Zhang } 545032fba14fSHong Zhang if (!col) { 5451d0f46423SBarry Smith start = A->cmap->rstart; 545232fba14fSHong Zhang cmap = a->garray; 5453d0f46423SBarry Smith nzA = a->A->cmap->n; 5454d0f46423SBarry Smith nzB = a->B->cmap->n; 54559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 545632fba14fSHong Zhang ncols = 0; 545732fba14fSHong Zhang for (i = 0; i < nzB; i++) { 545832fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 545932fba14fSHong Zhang else break; 546032fba14fSHong Zhang } 546132fba14fSHong Zhang imark = i; 546232fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 546332fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54649566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 546532fba14fSHong Zhang } else { 546632fba14fSHong Zhang iscola = *col; 546732fba14fSHong Zhang } 546832fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 547032fba14fSHong Zhang aloc[0] = *A_loc; 547132fba14fSHong Zhang } 54729566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5473109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54749566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5475109e0772SStefano Zampini } 547632fba14fSHong Zhang *A_loc = aloc[0]; 54779566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 547848a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 547948a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54809566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548232fba14fSHong Zhang } 548332fba14fSHong Zhang 54845c65b9ecSFande Kong /* 54855c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54865c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54875c65b9ecSFande Kong * on a global size. 54885c65b9ecSFande Kong * */ 5489ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5490d71ae5a4SJacob Faibussowitsch { 54915c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5492f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5493131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5494131c27b5Sprj- PetscMPIInt owner; 54955c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54965c65b9ecSFande Kong const PetscInt *lrowindices; 54975c65b9ecSFande Kong PetscSF sf, osf; 54985c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 54995c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 55005c65b9ecSFande Kong MPI_Comm comm; 55015c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5502fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 55035c65b9ecSFande Kong 55045c65b9ecSFande Kong PetscFunctionBegin; 55059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55065c65b9ecSFande Kong /* plocalsize is the number of roots 55075c65b9ecSFande Kong * nrows is the number of leaves 55085c65b9ecSFande Kong * */ 55099566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55109566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55119566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55129566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55135c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55145c65b9ecSFande Kong /* Find a remote index and an owner for a row 55155c65b9ecSFande Kong * The row could be local or remote 55165c65b9ecSFande Kong * */ 551734bcad68SFande Kong owner = 0; 551834bcad68SFande Kong lidx = 0; 55199566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55205c65b9ecSFande Kong iremote[i].index = lidx; 55215c65b9ecSFande Kong iremote[i].rank = owner; 55225c65b9ecSFande Kong } 55235c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55249566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5525f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55265c65b9ecSFande Kong * offsets 55275c65b9ecSFande Kong * */ 55289566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55299566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55309566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5531bc8e477aSFande Kong 55329566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55339566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55349566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55355c65b9ecSFande Kong roffsets[0] = 0; 55365c65b9ecSFande Kong roffsets[1] = 0; 55375c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55384cf0e950SBarry Smith /* diagonal */ 55395c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55404cf0e950SBarry Smith /* off-diagonal */ 55415c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55425c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55435c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55445c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55455c65b9ecSFande Kong } 55469566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55479566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55485c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55499566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55509566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55519566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55549566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55559566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55565c65b9ecSFande Kong dntotalcols = 0; 55575c65b9ecSFande Kong ontotalcols = 0; 5558bc8e477aSFande Kong ncol = 0; 55595c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55605c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5561bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55624cf0e950SBarry Smith /* diagonal */ 55635c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55644cf0e950SBarry Smith /* off-diagonal */ 55655c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55665c65b9ecSFande Kong } 55675c65b9ecSFande Kong /* We do not need to figure the right number of columns 55685c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55695c65b9ecSFande Kong * */ 55709566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55719566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55729566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55735c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55744cf0e950SBarry Smith /* diagonal */ 55759566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55764cf0e950SBarry Smith /* off-diagonal */ 55779566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55784cf0e950SBarry Smith /* diagonal */ 55799566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55804cf0e950SBarry Smith /* off-diagonal */ 55819566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55825c65b9ecSFande Kong dntotalcols = 0; 55835c65b9ecSFande Kong ontotalcols = 0; 55845c65b9ecSFande Kong ntotalcols = 0; 55855c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 558634bcad68SFande Kong owner = 0; 55879566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55885c65b9ecSFande Kong /* Set iremote for diag matrix */ 55895c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55905c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55915c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55925c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55935c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55945c65b9ecSFande Kong } 55954cf0e950SBarry Smith /* off-diagonal */ 55965c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55975c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55985c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 55995c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 56005c65b9ecSFande Kong } 56015c65b9ecSFande Kong } 56029566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 56039566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 56049566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 56059566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56065c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56075c65b9ecSFande Kong * Diag matrix 56085c65b9ecSFande Kong * */ 56099566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56109566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56119566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56125c65b9ecSFande Kong 56139566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56144cf0e950SBarry Smith /* off-diagonal */ 56159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56169566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56179566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56204cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56239566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56245c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56255c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56269566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56275c65b9ecSFande Kong /* We want P_oth store global indices */ 56289566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56295c65b9ecSFande Kong /* Use memory scalable approach */ 56309566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56319566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56329566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56339566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56345c65b9ecSFande Kong /* Convert back to local indices */ 56355c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56369566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56375c65b9ecSFande Kong nout = 0; 56389566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 563908401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56409566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56415c65b9ecSFande Kong /* Exchange values */ 56429566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56439566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56465c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56475c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56499566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56505c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56519566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56529566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56549566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56565c65b9ecSFande Kong } 56575c65b9ecSFande Kong 56585c65b9ecSFande Kong /* 56595c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56605c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56615c65b9ecSFande Kong * */ 5662d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5663d71ae5a4SJacob Faibussowitsch { 56645c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5665bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5666bc8e477aSFande Kong IS rows, map; 5667bc8e477aSFande Kong PetscHMapI hamp; 5668bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56695c65b9ecSFande Kong MPI_Comm comm; 56705c65b9ecSFande Kong PetscSF sf, osf; 5671bc8e477aSFande Kong PetscBool has; 56725c65b9ecSFande Kong 56735c65b9ecSFande Kong PetscFunctionBegin; 56749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56759566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56765c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56775c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56785c65b9ecSFande Kong * */ 56795c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56805c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5681eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56829566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5683bc8e477aSFande Kong count = 0; 5684bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5685bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5686bc8e477aSFande Kong key = a->garray[i] / dof; 56879566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5688bc8e477aSFande Kong if (!has) { 5689bc8e477aSFande Kong mapping[i] = count; 56909566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5691bc8e477aSFande Kong } else { 5692bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5693bc8e477aSFande Kong mapping[i] = count - 1; 56945c65b9ecSFande Kong } 5695bc8e477aSFande Kong } 56969566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56979566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5698eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 56999566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 57005c65b9ecSFande Kong off = 0; 57019566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 57029566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 57039566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 57049566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 57055c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57069566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57079566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57089566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57099566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57109566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57115c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57125c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 571335cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5714fff043a9SJunchao Zhang */ 5715fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5716fff043a9SJunchao Zhang 57179566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57189566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 571908401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57205c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57215c65b9ecSFande Kong /* Update values in place */ 57229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57249566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57259566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57269566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57279566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57306718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57319566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57335c65b9ecSFande Kong } 57345c65b9ecSFande Kong 573525616d81SHong Zhang /*@C 573620f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 573725616d81SHong Zhang 5738c3339decSBarry Smith Collective 573925616d81SHong Zhang 574025616d81SHong Zhang Input Parameters: 574111a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 574211a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 574311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 574425616d81SHong Zhang 5745f1a722f8SMatthew G. Knepley Output Parameters: 574627430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 574727430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5748f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 574925616d81SHong Zhang 575025616d81SHong Zhang Level: developer 575125616d81SHong Zhang 575220f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 575325616d81SHong Zhang @*/ 5754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5755d71ae5a4SJacob Faibussowitsch { 5756899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5757b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 575825616d81SHong Zhang IS isrowb, iscolb; 57590298fd71SBarry Smith Mat *bseq = NULL; 576025616d81SHong Zhang 576125616d81SHong Zhang PetscFunctionBegin; 576220f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 576320f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57649566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 576525616d81SHong Zhang 576625616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5767d0f46423SBarry Smith start = A->cmap->rstart; 576825616d81SHong Zhang cmap = a->garray; 5769d0f46423SBarry Smith nzA = a->A->cmap->n; 5770d0f46423SBarry Smith nzB = a->B->cmap->n; 57719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 577225616d81SHong Zhang ncols = 0; 57730390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 577425616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 577525616d81SHong Zhang else break; 577625616d81SHong Zhang } 577725616d81SHong Zhang imark = i; 57780390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57790390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57809566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57819566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 578225616d81SHong Zhang } else { 578308401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57849371c9d4SSatish Balay isrowb = *rowb; 57859371c9d4SSatish Balay iscolb = *colb; 57869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 578725616d81SHong Zhang bseq[0] = *B_seq; 578825616d81SHong Zhang } 57899566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 579025616d81SHong Zhang *B_seq = bseq[0]; 57919566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 579225616d81SHong Zhang if (!rowb) { 57939566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 579425616d81SHong Zhang } else { 579525616d81SHong Zhang *rowb = isrowb; 579625616d81SHong Zhang } 579725616d81SHong Zhang if (!colb) { 57989566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 579925616d81SHong Zhang } else { 580025616d81SHong Zhang *colb = iscolb; 580125616d81SHong Zhang } 58029566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 58033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 580425616d81SHong Zhang } 5805429d309bSHong Zhang 5806f8487c73SHong Zhang /* 580727430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 580801b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5809429d309bSHong Zhang 5810c3339decSBarry Smith Collective 5811429d309bSHong Zhang 5812429d309bSHong Zhang Input Parameters: 581327430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 581427430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5815429d309bSHong Zhang 5816429d309bSHong Zhang Output Parameter: 58170298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58180298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58190298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5820598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5821429d309bSHong Zhang 582211a5261eSBarry Smith Developer Note: 582311a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58246eb45d04SBarry Smith for this matrix. This is not desirable.. 58256eb45d04SBarry Smith 5826429d309bSHong Zhang Level: developer 5827429d309bSHong Zhang 5828f8487c73SHong Zhang */ 5829d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5830d71ae5a4SJacob Faibussowitsch { 5831899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 583287025532SHong Zhang Mat_SeqAIJ *b_oth; 58334b8d542aSHong Zhang VecScatter ctx; 5834ce94432eSBarry Smith MPI_Comm comm; 58353515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58363515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5837277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 5838f4259b30SLisandro Dalcin PetscInt i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len; 5839277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5840ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5841ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5842429d309bSHong Zhang 5843429d309bSHong Zhang PetscFunctionBegin; 58449566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5846a7c7454dSHong Zhang 584720f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 584820f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58499566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5851a6b2eed2SHong Zhang 5852ec07b8f8SHong Zhang if (size == 1) { 5853ec07b8f8SHong Zhang startsj_s = NULL; 5854ec07b8f8SHong Zhang bufa_ptr = NULL; 585552f7967eSHong Zhang *B_oth = NULL; 58563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5857ec07b8f8SHong Zhang } 5858ec07b8f8SHong Zhang 5859fa83eaafSHong Zhang ctx = a->Mvctx; 58604b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58614b8d542aSHong Zhang 58629566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58633515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58649566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58659566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5867ddea5d60SJunchao Zhang rwaits = reqs; 58688e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5869429d309bSHong Zhang 5870b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5871429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5872a6b2eed2SHong Zhang /* i-array */ 5873a6b2eed2SHong Zhang /* post receives */ 58749566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5875a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 587674268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5877e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5879429d309bSHong Zhang } 5880a6b2eed2SHong Zhang 5881a6b2eed2SHong Zhang /* pack the outgoing message */ 58829566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58832205254eSKarl Rupp 58842205254eSKarl Rupp sstartsj[0] = 0; 58852205254eSKarl Rupp rstartsj[0] = 0; 5886a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58873515ee7fSJunchao Zhang if (nsends) { 58883515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58903515ee7fSJunchao Zhang } 5891a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58923515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5893e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 589487025532SHong Zhang for (j = 0; j < nrows; j++) { 5895d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5896e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58979566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58982205254eSKarl Rupp 5899e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 59002205254eSKarl Rupp 5901e42f35eeSHong Zhang len += ncols; 59029566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5903e42f35eeSHong Zhang } 5904a6b2eed2SHong Zhang k++; 5905429d309bSHong Zhang } 59069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59072205254eSKarl Rupp 5908dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5909429d309bSHong Zhang } 591087025532SHong Zhang /* recvs and sends of i-array are completed */ 59119566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59129566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5913e42f35eeSHong Zhang 5914a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5917a6b2eed2SHong Zhang 591887025532SHong Zhang /* create i-array of B_oth */ 59199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59202205254eSKarl Rupp 592187025532SHong Zhang b_othi[0] = 0; 5922a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5923a6b2eed2SHong Zhang k = 0; 5924a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59253515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59263515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 592787025532SHong Zhang for (j = 0; j < nrows; j++) { 592887025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59299566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5930f91af8c7SBarry Smith k++; 5931a6b2eed2SHong Zhang } 5932dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5933a6b2eed2SHong Zhang } 59349566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5935a6b2eed2SHong Zhang 59366aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5939a6b2eed2SHong Zhang 594087025532SHong Zhang /* j-array */ 5941a6b2eed2SHong Zhang /* post receives of j-array */ 5942a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 594387025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5945a6b2eed2SHong Zhang } 5946e42f35eeSHong Zhang 5947e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59483515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5949a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5950e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5951a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 595287025532SHong Zhang for (j = 0; j < nrows; j++) { 5953d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5954e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59559566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5956ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59579566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5958e42f35eeSHong Zhang } 595987025532SHong Zhang } 59609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 596187025532SHong Zhang } 596287025532SHong Zhang 596387025532SHong Zhang /* recvs and sends of j-array are completed */ 59649566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 596587025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5966b7f45c76SHong Zhang sstartsj = *startsj_s; 59671d79065fSBarry Smith rstartsj = *startsj_r; 596887025532SHong Zhang bufa = *bufa_ptr; 596987025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 59709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5971ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 597287025532SHong Zhang 597387025532SHong Zhang /* a-array */ 597487025532SHong Zhang /* post receives of a-array */ 597587025532SHong Zhang for (i = 0; i < nrecvs; i++) { 597687025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 597887025532SHong Zhang } 5979e42f35eeSHong Zhang 5980e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59813515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 598287025532SHong Zhang for (i = 0; i < nsends; i++) { 5983e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 598487025532SHong Zhang bufA = bufa + sstartsj[i]; 598587025532SHong Zhang for (j = 0; j < nrows; j++) { 5986d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5987e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59889566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5989ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59909566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5991e42f35eeSHong Zhang } 5992a6b2eed2SHong Zhang } 59939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5994a6b2eed2SHong Zhang } 599587025532SHong Zhang /* recvs and sends of a-array are completed */ 59969566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59979566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5998a6b2eed2SHong Zhang 599987025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 6000a6b2eed2SHong Zhang /* put together the new matrix */ 60019566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 6002a6b2eed2SHong Zhang 6003a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6004a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 600587025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6006e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6007e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 600887025532SHong Zhang b_oth->nonew = 0; 6009a6b2eed2SHong Zhang 60109566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6011b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60129566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60139566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6014dea91ad1SHong Zhang } else { 6015b7f45c76SHong Zhang *startsj_s = sstartsj; 60161d79065fSBarry Smith *startsj_r = rstartsj; 601787025532SHong Zhang *bufa_ptr = bufa; 601887025532SHong Zhang } 6019fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6021dea91ad1SHong Zhang } 60223515ee7fSJunchao Zhang 60239566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60249566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60259566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6027429d309bSHong Zhang } 6028ccd8e176SBarry Smith 6029cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6030cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6031ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60329779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6033a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6034191b95cbSRichard Tran Mills #endif 6035ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6036cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60375d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6038cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60395d7652ecSHong Zhang #endif 6040d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6041d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6042d24d4204SJose E. Roman #endif 604363c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 604463c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 604563c07aadSStefano Zampini #endif 60463338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60473338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60483338378cSStefano Zampini #endif 6049d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6050d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6051d5e393b6SSuyash Tandon #endif 60523d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60533d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60543d0639e7SStefano Zampini #endif 6055d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60564222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60574222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 605817667f90SBarry Smith 6059fc4dec0aSBarry Smith /* 6060fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6061fc4dec0aSBarry Smith 6062fc4dec0aSBarry Smith n p p 60632da392ccSBarry Smith [ ] [ ] [ ] 60642da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60652da392ccSBarry Smith [ ] [ ] [ ] 6066fc4dec0aSBarry Smith 6067fc4dec0aSBarry Smith */ 6068d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6069d71ae5a4SJacob Faibussowitsch { 6070fc4dec0aSBarry Smith Mat At, Bt, Ct; 6071fc4dec0aSBarry Smith 6072fc4dec0aSBarry Smith PetscFunctionBegin; 60739566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60749566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 60759566063dSJacob Faibussowitsch PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct)); 60769566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60779566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60787fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60799566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60809566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6082fc4dec0aSBarry Smith } 6083fc4dec0aSBarry Smith 6084d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6085d71ae5a4SJacob Faibussowitsch { 60866718818eSStefano Zampini PetscBool cisdense; 6087fc4dec0aSBarry Smith 6088fc4dec0aSBarry Smith PetscFunctionBegin; 608908401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60919566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6092d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 609348a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60949566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6095f75ecaa4SHong Zhang 60964222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6098fc4dec0aSBarry Smith } 6099fc4dec0aSBarry Smith 6100d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6101d71ae5a4SJacob Faibussowitsch { 61024222ddf1SHong Zhang Mat_Product *product = C->product; 61034222ddf1SHong Zhang Mat A = product->A, B = product->B; 6104fc4dec0aSBarry Smith 6105fc4dec0aSBarry Smith PetscFunctionBegin; 610620f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 610720f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61084222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61094222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6111fc4dec0aSBarry Smith } 6112fc4dec0aSBarry Smith 6113d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6114d71ae5a4SJacob Faibussowitsch { 61154222ddf1SHong Zhang Mat_Product *product = C->product; 61164222ddf1SHong Zhang 61174222ddf1SHong Zhang PetscFunctionBegin; 611848a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61204222ddf1SHong Zhang } 6121394ed5ebSJunchao Zhang 612227430b45SBarry Smith /* 612327430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6124394ed5ebSJunchao Zhang 6125394ed5ebSJunchao Zhang Input Parameters: 6126394ed5ebSJunchao Zhang 6127651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6128651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6129394ed5ebSJunchao Zhang 6130158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6131394ed5ebSJunchao Zhang 6132394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6133394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6134394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6135394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6136394ed5ebSJunchao Zhang 6137394ed5ebSJunchao Zhang Similar for Set2. 6138394ed5ebSJunchao Zhang 6139394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6140394ed5ebSJunchao Zhang 6141158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6142394ed5ebSJunchao Zhang 6143394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6144394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6145394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6146394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6147394ed5ebSJunchao Zhang */ 6148d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6149d71ae5a4SJacob Faibussowitsch { 6150394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6151394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6152394ed5ebSJunchao Zhang 6153394ed5ebSJunchao Zhang PetscFunctionBegin; 61549566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6155394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6156394ed5ebSJunchao Zhang i[0] = 0; 6157394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6158394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6159394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6160394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6161394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6162394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6163394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6164394ed5ebSJunchao Zhang j[t] = j1[b1]; 6165394ed5ebSJunchao Zhang imap1[t1] = t; 6166394ed5ebSJunchao Zhang imap2[t2] = t; 6167394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6168394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61699371c9d4SSatish Balay t1++; 61709371c9d4SSatish Balay t2++; 61719371c9d4SSatish Balay t++; 6172394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6173394ed5ebSJunchao Zhang j[t] = j1[b1]; 6174394ed5ebSJunchao Zhang imap1[t1] = t; 6175394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61769371c9d4SSatish Balay t1++; 61779371c9d4SSatish Balay t++; 6178394ed5ebSJunchao Zhang } else { 6179394ed5ebSJunchao Zhang j[t] = j2[b2]; 6180394ed5ebSJunchao Zhang imap2[t2] = t; 6181394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61829371c9d4SSatish Balay t2++; 61839371c9d4SSatish Balay t++; 6184394ed5ebSJunchao Zhang } 6185394ed5ebSJunchao Zhang } 6186394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6187394ed5ebSJunchao Zhang while (b1 < e1) { 6188394ed5ebSJunchao Zhang j[t] = j1[b1]; 6189394ed5ebSJunchao Zhang imap1[t1] = t; 6190394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61919371c9d4SSatish Balay t1++; 61929371c9d4SSatish Balay t++; 6193394ed5ebSJunchao Zhang } 6194394ed5ebSJunchao Zhang while (b2 < e2) { 6195394ed5ebSJunchao Zhang j[t] = j2[b2]; 6196394ed5ebSJunchao Zhang imap2[t2] = t; 6197394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61989371c9d4SSatish Balay t2++; 61999371c9d4SSatish Balay t++; 6200394ed5ebSJunchao Zhang } 6201394ed5ebSJunchao Zhang i[r + 1] = t; 6202394ed5ebSJunchao Zhang } 62033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6204394ed5ebSJunchao Zhang } 6205394ed5ebSJunchao Zhang 620627430b45SBarry Smith /* 620727430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6208394ed5ebSJunchao Zhang 6209394ed5ebSJunchao Zhang Input Parameters: 6210394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6211394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6212394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6213394ed5ebSJunchao Zhang 6214394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6215394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6216394ed5ebSJunchao Zhang 6217394ed5ebSJunchao Zhang Output Parameters: 6218394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6219394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6220394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6221394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6222394ed5ebSJunchao Zhang 6223394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6224158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6225158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6226394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6227394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6228394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6229394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6230394ed5ebSJunchao Zhang 6231394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6232394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6233394ed5ebSJunchao Zhang 6234394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6235394ed5ebSJunchao Zhang 6236158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6237394ed5ebSJunchao Zhang */ 6238d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6239d71ae5a4SJacob Faibussowitsch { 6240394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6241394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6242394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6243394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6244394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6245394ed5ebSJunchao Zhang 6246394ed5ebSJunchao Zhang PetscFunctionBegin; 62479566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62489566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6249394ed5ebSJunchao Zhang m = rend - rstart; 6250394ed5ebSJunchao Zhang 6251651b1cf9SStefano Zampini /* Skip negative rows */ 6252651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62539371c9d4SSatish Balay if (i[k] >= 0) break; 6254394ed5ebSJunchao Zhang 6255394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6256394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6257394ed5ebSJunchao Zhang */ 6258394ed5ebSJunchao Zhang while (k < n) { 6259394ed5ebSJunchao Zhang row = i[k]; 6260394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62619371c9d4SSatish Balay for (s = k; s < n; s++) 62629371c9d4SSatish Balay if (i[s] != row) break; 6263651b1cf9SStefano Zampini 6264651b1cf9SStefano Zampini /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */ 6265394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 6266651b1cf9SStefano Zampini if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT; 626754c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6268394ed5ebSJunchao Zhang } 62699566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6270158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6271394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6272394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6273394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6274394ed5ebSJunchao Zhang 6275394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6276394ed5ebSJunchao Zhang Atot += mid - k; 6277394ed5ebSJunchao Zhang Btot += s - mid; 6278394ed5ebSJunchao Zhang 6279651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6280394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6281394ed5ebSJunchao Zhang col = j[p]; 62829371c9d4SSatish Balay do { 6283651b1cf9SStefano Zampini j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */ 62849371c9d4SSatish Balay p++; 6285651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6286394ed5ebSJunchao Zhang Annz++; 6287394ed5ebSJunchao Zhang } 6288394ed5ebSJunchao Zhang 6289651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6290394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6291394ed5ebSJunchao Zhang col = j[p]; 6292d71ae5a4SJacob Faibussowitsch do { 6293d71ae5a4SJacob Faibussowitsch p++; 6294d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6295394ed5ebSJunchao Zhang Bnnz++; 6296394ed5ebSJunchao Zhang } 6297394ed5ebSJunchao Zhang k = s; 6298394ed5ebSJunchao Zhang } 6299394ed5ebSJunchao Zhang 6300394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6301158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6302158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6303158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6304158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6305394ed5ebSJunchao Zhang 63066aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6307394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6308394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6309394ed5ebSJunchao Zhang k = rowBegin[r]; 6310394ed5ebSJunchao Zhang mid = rowMid[r]; 6311394ed5ebSJunchao Zhang s = rowEnd[r]; 63128e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63138e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6314394ed5ebSJunchao Zhang Atot += mid - k; 6315394ed5ebSJunchao Zhang Btot += s - mid; 6316394ed5ebSJunchao Zhang 6317394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6318394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6319394ed5ebSJunchao Zhang col = j[p]; 6320394ed5ebSJunchao Zhang q = p; 6321d71ae5a4SJacob Faibussowitsch do { 6322d71ae5a4SJacob Faibussowitsch p++; 6323d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6324394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6325394ed5ebSJunchao Zhang Annz++; 6326394ed5ebSJunchao Zhang } 6327394ed5ebSJunchao Zhang 6328394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6329394ed5ebSJunchao Zhang col = j[p]; 6330394ed5ebSJunchao Zhang q = p; 6331d71ae5a4SJacob Faibussowitsch do { 6332d71ae5a4SJacob Faibussowitsch p++; 6333d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6334394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6335394ed5ebSJunchao Zhang Bnnz++; 6336394ed5ebSJunchao Zhang } 6337394ed5ebSJunchao Zhang } 6338394ed5ebSJunchao Zhang /* Output */ 6339394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6340394ed5ebSJunchao Zhang *Annz_ = Annz; 6341394ed5ebSJunchao Zhang *Atot_ = Atot; 6342394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6343394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6344394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6345394ed5ebSJunchao Zhang *Btot_ = Btot; 6346394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6348394ed5ebSJunchao Zhang } 6349394ed5ebSJunchao Zhang 635027430b45SBarry Smith /* 635127430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6352158ec288SJunchao Zhang 6353158ec288SJunchao Zhang Input Parameters: 6354158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6355158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6356158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6357651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6358158ec288SJunchao Zhang 6359158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6360158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6361158ec288SJunchao Zhang 6362158ec288SJunchao Zhang Example: 6363158ec288SJunchao Zhang nnz1 = 4 6364158ec288SJunchao Zhang nnz = 6 6365158ec288SJunchao Zhang imap = [1,3,4,5] 6366158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6367158ec288SJunchao Zhang then, 6368158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6369158ec288SJunchao Zhang */ 6370d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6371d71ae5a4SJacob Faibussowitsch { 6372158ec288SJunchao Zhang PetscCount k, p; 6373158ec288SJunchao Zhang 6374158ec288SJunchao Zhang PetscFunctionBegin; 6375158ec288SJunchao Zhang jmap_new[0] = 0; 6376158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6377158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6378158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6379158ec288SJunchao Zhang } 6380158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6382158ec288SJunchao Zhang } 6383158ec288SJunchao Zhang 63842c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data) 63852c4ab24aSJunchao Zhang { 63862c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data; 63872c4ab24aSJunchao Zhang 63882c4ab24aSJunchao Zhang PetscFunctionBegin; 63892c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63902c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63912c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63922c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63932c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63942c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63952c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63962c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63972c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63982c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 63992c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 64002c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 64012c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 64022c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 64032c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64042c4ab24aSJunchao Zhang } 64052c4ab24aSJunchao Zhang 6406d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6407d71ae5a4SJacob Faibussowitsch { 6408394ed5ebSJunchao Zhang MPI_Comm comm; 6409394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6410394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6411394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6412394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64132c4ab24aSJunchao Zhang PetscContainer container; 64142c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6415394ed5ebSJunchao Zhang 6416394ed5ebSJunchao Zhang PetscFunctionBegin; 64179566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64189566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6419cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6420eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6421cbc6b225SStefano Zampini #else 64229566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6423cbc6b225SStefano Zampini #endif 64249566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6425cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6426cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6427cbc6b225SStefano Zampini 64289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64319566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64329566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64339566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64349566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64359566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64369566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6437394ed5ebSJunchao Zhang 64386aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6439394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6440394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6441e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6442e8729f6fSJunchao Zhang 6443e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6444394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6445394ed5ebSJunchao Zhang 6446394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6447394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6448394ed5ebSJunchao Zhang will have positive row indices. 6449394ed5ebSJunchao Zhang */ 6450394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 6451394ed5ebSJunchao Zhang if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT; /* e.g., -2^31, minimal to move them ahead */ 6452394ed5ebSJunchao Zhang else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */ 6453f7d195e4SLawrence Mitchell else { 6454f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 6455f7d195e4SLawrence Mitchell if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */ 6456f7d195e4SLawrence Mitchell } 6457394ed5ebSJunchao Zhang } 6458394ed5ebSJunchao Zhang 6459da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64609566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6461651b1cf9SStefano Zampini 6462651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6463651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64649371c9d4SSatish Balay if (i1[k] > PETSC_MIN_INT) break; 6465651b1cf9SStefano Zampini PetscInt i1start = k; 6466651b1cf9SStefano Zampini 64679566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */ 6468394ed5ebSJunchao Zhang for (; k < rem; k++) i1[k] += PETSC_MAX_INT; /* Revert row indices of local rows*/ 6469394ed5ebSJunchao Zhang 6470394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6471394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6472394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6473394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6474394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6475394ed5ebSJunchao Zhang const PetscInt *ranges; 6476394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6477394ed5ebSJunchao Zhang 64789566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64799566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6480394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6481394ed5ebSJunchao Zhang PetscMPIInt owner; 6482394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6483cbc6b225SStefano Zampini 6484394ed5ebSJunchao Zhang /* Locate a row range */ 6485394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64869566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6487394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6488394ed5ebSJunchao Zhang 6489394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64909566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6491394ed5ebSJunchao Zhang 6492394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6493394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6494394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6495394ed5ebSJunchao Zhang PetscInt *nentries2; 6496394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6497cbc6b225SStefano Zampini 64989566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 64999566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 65009566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 65019566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6502394ed5ebSJunchao Zhang sendto = sendto2; 6503394ed5ebSJunchao Zhang nentries = nentries2; 6504394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6505394ed5ebSJunchao Zhang } 6506394ed5ebSJunchao Zhang sendto[nsend] = owner; 6507394ed5ebSJunchao Zhang nentries[nsend] = p - k; 65089566063dSJacob Faibussowitsch PetscCall(PetscCountCast(p - k, &nentries[nsend])); 6509394ed5ebSJunchao Zhang nsend++; 6510394ed5ebSJunchao Zhang k = p; 6511394ed5ebSJunchao Zhang } 6512394ed5ebSJunchao Zhang 6513394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6514394ed5ebSJunchao Zhang PetscSF sf1; 6515394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6516394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6517394ed5ebSJunchao Zhang PetscInt *offsets; 6518394ed5ebSJunchao Zhang PetscSFNode *iremote; 6519394ed5ebSJunchao Zhang 65209566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6523394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6524394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6525394ed5ebSJunchao Zhang iremote[k].index = 0; 6526394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 652754c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6528394ed5ebSJunchao Zhang } 65299566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65309566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65319566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65329566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6533e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6534394ed5ebSJunchao Zhang 6535394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6536394ed5ebSJunchao Zhang PetscSF sf2; 6537394ed5ebSJunchao Zhang nroots = nroots2; 6538394ed5ebSJunchao Zhang nleaves = nleaves2; 65399566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65409566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6542394ed5ebSJunchao Zhang p = 0; 6543394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 654454c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6545394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6546394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 6547394ed5ebSJunchao Zhang iremote[p].index = offsets[k] + q; 6548394ed5ebSJunchao Zhang } 6549394ed5ebSJunchao Zhang } 65509566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6551394ed5ebSJunchao Zhang 6552394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6553394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6554394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65559566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6556834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6557834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6558834dcf29SHansol Suh PetscInt *i1prem = i1 ? i1 + rem : NULL; /* silence ubsan warnings about pointer arithmetic on null pointer */ 6559834dcf29SHansol Suh PetscInt *j1prem = j1 ? j1 + rem : NULL; 6560834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6561834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6562834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6563834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6564394ed5ebSJunchao Zhang 65659566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65669566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6567394ed5ebSJunchao Zhang 6568394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6569394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65709566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6571394ed5ebSJunchao Zhang 6572651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6573651b1cf9SStefano Zampini PetscCount *Cperm1; 6574834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6575834dcf29SHansol Suh PetscCount *perm1prem = perm1 ? perm1 + rem : NULL; 6576651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6577834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6578651b1cf9SStefano Zampini 6579651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6580651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6581651b1cf9SStefano Zampini PetscBool hypre; 6582651b1cf9SStefano Zampini const char *name; 6583651b1cf9SStefano Zampini PetscCall(PetscObjectGetName((PetscObject)mat, &name)); 6584651b1cf9SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre)); 6585651b1cf9SStefano Zampini if (hypre) { 6586651b1cf9SStefano Zampini PetscInt *minj; 6587651b1cf9SStefano Zampini PetscBT hasdiag; 6588651b1cf9SStefano Zampini 6589651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6590651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 6591651b1cf9SStefano Zampini for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT; 6592651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6593651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6594651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6595651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6596651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6597651b1cf9SStefano Zampini } 6598651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6599651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6600651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6601651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6602651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6603651b1cf9SStefano Zampini } 6604651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6605651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6606651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6607651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6608651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6609651b1cf9SStefano Zampini } 6610651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6611651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6612651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6613651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6614651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6615651b1cf9SStefano Zampini } 6616651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6617651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6618651b1cf9SStefano Zampini } 6619651b1cf9SStefano Zampini 6620651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6621651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6622651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6623651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6624394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6625394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6626394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6627394ed5ebSJunchao Zhang 6628651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66299566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6630651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66319566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6632394ed5ebSJunchao Zhang 6633394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6634394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6635394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6636394ed5ebSJunchao Zhang 66379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6641394ed5ebSJunchao Zhang 6642394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6643158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6644158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6645158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6646158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6647394ed5ebSJunchao Zhang 66489566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66499566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6650158ec288SJunchao Zhang 6651158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6652158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6653158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6654158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6655158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6656158ec288SJunchao Zhang 6657158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6658158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6659158ec288SJunchao Zhang 6660158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6661158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6662158ec288SJunchao Zhang 6663158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6664158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6665158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6666158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66679566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66689566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6669e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66709566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6671394ed5ebSJunchao Zhang 6672158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6673158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6674158ec288SJunchao Zhang 6675394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6676394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6677394ed5ebSJunchao Zhang PetscInt *Aj_new; 66789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66799566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66809566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6681394ed5ebSJunchao Zhang Aj = Aj_new; 6682394ed5ebSJunchao Zhang } 6683394ed5ebSJunchao Zhang 6684394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6685394ed5ebSJunchao Zhang PetscInt *Bj_new; 66869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66879566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66889566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6689394ed5ebSJunchao Zhang Bj = Bj_new; 6690394ed5ebSJunchao Zhang } 6691394ed5ebSJunchao Zhang 6692cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6693394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6694cbc6b225SStefano Zampini MatType rtype; 6695394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6696cf8ba265SJunchao Zhang PetscObjectState state; 66979566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66989566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6699394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 67009371c9d4SSatish Balay if (cstart) { 67019371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 67029371c9d4SSatish Balay } 6703c508b908SBarry Smith 67049566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6705c508b908SBarry Smith 6706c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6707c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 67089566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 67090da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6710c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6711c508b908SBarry Smith 6712c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6713c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 67149566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67150da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6716c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6717c508b908SBarry Smith 67189566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67195bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6720cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6721cf8ba265SJunchao Zhang PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6722cbc6b225SStefano Zampini 6723394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6724394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 6725394ed5ebSJunchao Zhang a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */ 6726394ed5ebSJunchao Zhang a->free_a = b->free_a = PETSC_TRUE; 6727394ed5ebSJunchao Zhang a->free_ij = b->free_ij = PETSC_TRUE; 6728394ed5ebSJunchao Zhang 6729cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67309566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67319566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67329566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67339566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6734cbc6b225SStefano Zampini 67352c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67362c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67372c4ab24aSJunchao Zhang coo->n = coo_n; 67382c4ab24aSJunchao Zhang coo->sf = sf2; 67392c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67402c4ab24aSJunchao Zhang coo->recvlen = nroots; 67412c4ab24aSJunchao Zhang coo->Annz = Annz; 67422c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67432c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67442c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67452c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67462c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67472c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67482c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67492c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67502c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67512c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67522c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67532c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67542c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67552c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67562c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67572c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67582c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67592c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67602c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67612c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67622c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67632c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 67642c4ab24aSJunchao Zhang PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67652c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67662c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6768394ed5ebSJunchao Zhang } 6769394ed5ebSJunchao Zhang 6770d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6771d71ae5a4SJacob Faibussowitsch { 6772394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6773394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6774394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67752c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67762c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67772c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67782c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67792c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67802c4ab24aSJunchao Zhang PetscContainer container; 67812c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6782394ed5ebSJunchao Zhang 6783394ed5ebSJunchao Zhang PetscFunctionBegin; 67842c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67852c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67862c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67872c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67882c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67892c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67902c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67912c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67922c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67932c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67942c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67952c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67962c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67972c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67982c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67992c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 68002c4ab24aSJunchao Zhang 68019566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 68029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6803394ed5ebSJunchao Zhang 6804394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 68052c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6806394ed5ebSJunchao Zhang 6807394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 68082c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6809394ed5ebSJunchao Zhang /* Add local entries to A and B */ 68102c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6811da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6812158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6813158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6814394ed5ebSJunchao Zhang } 68152c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6816158ec288SJunchao Zhang PetscScalar sum = 0.0; 6817158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6818158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6819394ed5ebSJunchao Zhang } 68202c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6821394ed5ebSJunchao Zhang 6822394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68232c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6824394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6825394ed5ebSJunchao Zhang } 68262c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6827394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6828394ed5ebSJunchao Zhang } 68299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6832394ed5ebSJunchao Zhang } 6833394ed5ebSJunchao Zhang 6834ccd8e176SBarry Smith /*MC 6835ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6836ccd8e176SBarry Smith 6837ccd8e176SBarry Smith Options Database Keys: 683811a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6839ccd8e176SBarry Smith 6840ccd8e176SBarry Smith Level: beginner 68410cd7f59aSBarry Smith 68420cd7f59aSBarry Smith Notes: 68432ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68440cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68450cd7f59aSBarry Smith in the matrix 68460cd7f59aSBarry Smith 684711a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 684811a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6849ccd8e176SBarry Smith 68501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6851ccd8e176SBarry Smith M*/ 6852d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6853d71ae5a4SJacob Faibussowitsch { 6854ccd8e176SBarry Smith Mat_MPIAIJ *b; 6855ccd8e176SBarry Smith PetscMPIInt size; 6856ccd8e176SBarry Smith 6857ccd8e176SBarry Smith PetscFunctionBegin; 68589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68592205254eSKarl Rupp 68604dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6861ccd8e176SBarry Smith B->data = (void *)b; 6862aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6863ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6864ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6865ccd8e176SBarry Smith b->size = size; 68662205254eSKarl Rupp 68679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6868ccd8e176SBarry Smith 6869ccd8e176SBarry Smith /* build cache for off array entries formed */ 68709566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68712205254eSKarl Rupp 6872ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6873f4259b30SLisandro Dalcin b->colmap = NULL; 6874f4259b30SLisandro Dalcin b->garray = NULL; 6875ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6876ccd8e176SBarry Smith 6877ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68780298fd71SBarry Smith b->lvec = NULL; 68790298fd71SBarry Smith b->Mvctx = NULL; 6880ccd8e176SBarry Smith 6881ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6882f4259b30SLisandro Dalcin b->rowindices = NULL; 6883f4259b30SLisandro Dalcin b->rowvalues = NULL; 6884ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6885ccd8e176SBarry Smith 6886f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68870298fd71SBarry Smith b->spptr = NULL; 6888f60c3dc2SHong Zhang 68899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 68959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68993d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 69009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 69013d0639e7SStefano Zampini #endif 6902d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6903d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6904d5e393b6SSuyash Tandon #endif 69053d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 69069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 69073d0639e7SStefano Zampini #endif 69089779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 69099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6910191b95cbSRichard Tran Mills #endif 69119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 69129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 69139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 69149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69155d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69175d7652ecSHong Zhang #endif 6918d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6920d24d4204SJose E. Roman #endif 69219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69233dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69263dad0653Sstefano_zampini #endif 69279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69319566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6933ccd8e176SBarry Smith } 693481824310SBarry Smith 69355d83a8b1SBarry Smith /*@ 693611a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 693703bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 693803bfb495SBarry Smith 6939d083f849SBarry Smith Collective 694003bfb495SBarry Smith 694103bfb495SBarry Smith Input Parameters: 694203bfb495SBarry Smith + comm - MPI communicator 694311a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 694403bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6945d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69462ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69472ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69482ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6949483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 695004ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 695103bfb495SBarry Smith . a - matrix values 6952483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69532ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 695403bfb495SBarry Smith - oa - matrix values 695503bfb495SBarry Smith 695603bfb495SBarry Smith Output Parameter: 695703bfb495SBarry Smith . mat - the matrix 695803bfb495SBarry Smith 695903bfb495SBarry Smith Level: advanced 696003bfb495SBarry Smith 696103bfb495SBarry Smith Notes: 6962f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6963292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 696403bfb495SBarry Smith 69652ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 696603bfb495SBarry Smith 69672ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 696803bfb495SBarry Smith 69697b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69707b55108eSBarry Smith 6971dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6972dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6973dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6974dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 697511a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6976dca341c0SJed Brown communication if it is known that only local entries will be set. 697703bfb495SBarry Smith 69781cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6979db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69802b26979fSBarry Smith @*/ 6981d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6982d71ae5a4SJacob Faibussowitsch { 698303bfb495SBarry Smith Mat_MPIAIJ *maij; 698403bfb495SBarry Smith 698503bfb495SBarry Smith PetscFunctionBegin; 698608401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6987aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6988aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69899566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69919566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 699203bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69932205254eSKarl Rupp 69948d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 699503bfb495SBarry Smith 69969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 699803bfb495SBarry Smith 69999566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 70009566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 700103bfb495SBarry Smith 70029566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 70039566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 70049566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 70059566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 70069566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 70073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 700803bfb495SBarry Smith } 700903bfb495SBarry Smith 70104e84afc0SStefano Zampini typedef struct { 70114e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 70124e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 70134e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 70144e84afc0SStefano Zampini 70154e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70164e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70174e84afc0SStefano Zampini PetscScalar *bufa; 70184e84afc0SStefano Zampini Mat P_oth; 70194e84afc0SStefano Zampini 70204e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7021ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70224e84afc0SStefano Zampini 7023ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70244e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70254e84afc0SStefano Zampini of the temporary storage */ 70264e84afc0SStefano Zampini PetscBool reusesym; 70274e84afc0SStefano Zampini 70284e84afc0SStefano Zampini /* support for COO values insertion */ 7029ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7030ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7031ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7032ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7033c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7034c215019aSStefano Zampini PetscMemType mtype; 70354e84afc0SStefano Zampini 70364e84afc0SStefano Zampini /* customization */ 70374e84afc0SStefano Zampini PetscBool abmerge; 7038abb89eb1SStefano Zampini PetscBool P_oth_bind; 70394e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70404e84afc0SStefano Zampini 7041ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7042d71ae5a4SJacob Faibussowitsch { 70434e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70444e84afc0SStefano Zampini PetscInt i; 70454e84afc0SStefano Zampini 70464e84afc0SStefano Zampini PetscFunctionBegin; 70479566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70489566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70499566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70509566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70519566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70529566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70539566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 705448a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70559566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70569566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70579566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70589566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70599566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70609566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70624e84afc0SStefano Zampini } 70634e84afc0SStefano Zampini 7064fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7065fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7066fff043a9SJunchao Zhang */ 7067d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7068d71ae5a4SJacob Faibussowitsch { 7069c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7070c215019aSStefano Zampini 7071c215019aSStefano Zampini PetscFunctionBegin; 70729566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7073c215019aSStefano Zampini if (f) { 70749566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7075c215019aSStefano Zampini } else { 7076c215019aSStefano Zampini const PetscScalar *vv; 7077c215019aSStefano Zampini 70789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7079c215019aSStefano Zampini if (n && idx) { 7080c215019aSStefano Zampini PetscScalar *w = v; 7081c215019aSStefano Zampini const PetscInt *oi = idx; 7082c215019aSStefano Zampini PetscInt j; 7083c215019aSStefano Zampini 7084c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7085c215019aSStefano Zampini } else { 70869566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7087c215019aSStefano Zampini } 70889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7089c215019aSStefano Zampini } 70903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7091c215019aSStefano Zampini } 7092c215019aSStefano Zampini 7093d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7094d71ae5a4SJacob Faibussowitsch { 70954e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70964e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70974e84afc0SStefano Zampini 70984e84afc0SStefano Zampini PetscFunctionBegin; 70994e84afc0SStefano Zampini MatCheckProduct(C, 1); 710028b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 71014e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 71024e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 710348a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 710448a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 71054e84afc0SStefano Zampini } 71064e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7107abb89eb1SStefano Zampini 7108abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 710908401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 71109566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7111abb89eb1SStefano Zampini } 71124e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 71134e84afc0SStefano Zampini PetscInt noff = mmdata->off[i + 1] - mmdata->off[i]; 71144e84afc0SStefano Zampini 71154e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71164e84afc0SStefano Zampini if (noff) { 7117c215019aSStefano Zampini PetscInt nown = mmdata->own[i + 1] - mmdata->own[i]; 7118c215019aSStefano Zampini 71199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71214e84afc0SStefano Zampini n_o += noff; 71224e84afc0SStefano Zampini n_d += nown; 71234e84afc0SStefano Zampini } else { 7124c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7125c215019aSStefano Zampini 71269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71274e84afc0SStefano Zampini n_d += mm->nz; 71284e84afc0SStefano Zampini } 71294e84afc0SStefano Zampini } 7130c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71319566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71329566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71334e84afc0SStefano Zampini } 71349566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71364e84afc0SStefano Zampini } 71374e84afc0SStefano Zampini 71384e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71394e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7140d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7141d71ae5a4SJacob Faibussowitsch { 71424e84afc0SStefano Zampini Mat_Product *product = C->product; 7143ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71444e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71454e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71464e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71474e84afc0SStefano Zampini IS glob = NULL; 71484e84afc0SStefano Zampini const char *prefix; 71494e84afc0SStefano Zampini char pprefix[256]; 71504e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 715182a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 715282a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7153ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7154ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7155ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7156ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7157ddea5d60SJunchao Zhang 71584e84afc0SStefano Zampini MatProductType ptype; 7159d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71604e84afc0SStefano Zampini PetscMPIInt size; 71614e84afc0SStefano Zampini 71624e84afc0SStefano Zampini PetscFunctionBegin; 71634e84afc0SStefano Zampini MatCheckProduct(C, 1); 716428b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71654e84afc0SStefano Zampini ptype = product->type; 7166b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7167fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7168fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7169fa046f9fSJunchao Zhang } 71704e84afc0SStefano Zampini switch (ptype) { 71714e84afc0SStefano Zampini case MATPRODUCT_AB: 71724e84afc0SStefano Zampini A = product->A; 71734e84afc0SStefano Zampini P = product->B; 71744e84afc0SStefano Zampini m = A->rmap->n; 71754e84afc0SStefano Zampini n = P->cmap->n; 71764e84afc0SStefano Zampini M = A->rmap->N; 71774e84afc0SStefano Zampini N = P->cmap->N; 7178ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71794e84afc0SStefano Zampini break; 71804e84afc0SStefano Zampini case MATPRODUCT_AtB: 71814e84afc0SStefano Zampini P = product->A; 71824e84afc0SStefano Zampini A = product->B; 71834e84afc0SStefano Zampini m = P->cmap->n; 71844e84afc0SStefano Zampini n = A->cmap->n; 71854e84afc0SStefano Zampini M = P->cmap->N; 71864e84afc0SStefano Zampini N = A->cmap->N; 71874e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71884e84afc0SStefano Zampini break; 71894e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71904e84afc0SStefano Zampini A = product->A; 71914e84afc0SStefano Zampini P = product->B; 71924e84afc0SStefano Zampini m = P->cmap->n; 71934e84afc0SStefano Zampini n = P->cmap->n; 71944e84afc0SStefano Zampini M = P->cmap->N; 71954e84afc0SStefano Zampini N = P->cmap->N; 71964e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71974e84afc0SStefano Zampini break; 7198d71ae5a4SJacob Faibussowitsch default: 7199d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 72004e84afc0SStefano Zampini } 72019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 72024e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 72034e84afc0SStefano Zampini 72044e84afc0SStefano Zampini /* defaults */ 72054e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 72064e84afc0SStefano Zampini mp[i] = NULL; 72074e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 72084e84afc0SStefano Zampini rmapt[i] = -1; 72094e84afc0SStefano Zampini cmapt[i] = -1; 72104e84afc0SStefano Zampini rmapa[i] = NULL; 72114e84afc0SStefano Zampini cmapa[i] = NULL; 72124e84afc0SStefano Zampini } 72134e84afc0SStefano Zampini 72144e84afc0SStefano Zampini /* customization */ 72159566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72164e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72174e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72184e84afc0SStefano Zampini if (product->api_user) { 7219d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72209566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72219566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7222d0609cedSBarry Smith PetscOptionsEnd(); 72234e84afc0SStefano Zampini } else { 7224d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72259566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72269566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7227d0609cedSBarry Smith PetscOptionsEnd(); 7228abb89eb1SStefano Zampini } 7229abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7230abb89eb1SStefano Zampini if (product->api_user) { 7231d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72329566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7233d0609cedSBarry Smith PetscOptionsEnd(); 7234abb89eb1SStefano Zampini } else { 7235d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72369566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7237d0609cedSBarry Smith PetscOptionsEnd(); 72384e84afc0SStefano Zampini } 72394e84afc0SStefano Zampini } 72404e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72414e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72429566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72439566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72449566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72459566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72469566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7247ddea5d60SJunchao Zhang 7248ddea5d60SJunchao Zhang cp = 0; 72494e84afc0SStefano Zampini switch (ptype) { 72504e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72519566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72524e84afc0SStefano Zampini 7253ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7254ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72554e84afc0SStefano Zampini /* P is product->B */ 72569566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72579566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72589566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72599566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72609566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72619566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72629566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72634e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72649566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72659566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72669566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72674e84afc0SStefano Zampini rmapt[cp] = 1; 72684e84afc0SStefano Zampini cmapt[cp] = 2; 72694e84afc0SStefano Zampini cmapa[cp] = globidx; 72704e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72714e84afc0SStefano Zampini cp++; 7272ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72739566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72749566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72759566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72769566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72779566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72789566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72794e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72809566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72819566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72824e84afc0SStefano Zampini rmapt[cp] = 1; 72834e84afc0SStefano Zampini cmapt[cp] = 1; 72844e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72854e84afc0SStefano Zampini cp++; 72869566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72879566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72889566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72899566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72909566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72919566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72924e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72939566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72949566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72954e84afc0SStefano Zampini rmapt[cp] = 1; 72964e84afc0SStefano Zampini cmapt[cp] = 2; 72974e84afc0SStefano Zampini cmapa[cp] = p->garray; 72984e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72994e84afc0SStefano Zampini cp++; 73004e84afc0SStefano Zampini } 7301ddea5d60SJunchao Zhang 7302ddea5d60SJunchao Zhang /* A_off * P_other */ 73034e84afc0SStefano Zampini if (mmdata->P_oth) { 73049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 73059566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7306f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73079566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73089566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73099566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73109566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73119566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73129566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73139566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73144e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73159566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73169566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73174e84afc0SStefano Zampini rmapt[cp] = 1; 73184e84afc0SStefano Zampini cmapt[cp] = 2; 73194e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73204e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73214e84afc0SStefano Zampini cp++; 73224e84afc0SStefano Zampini } 73234e84afc0SStefano Zampini break; 7324ddea5d60SJunchao Zhang 73254e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73264e84afc0SStefano Zampini /* A is product->B */ 73279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7328ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73299566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73309566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73319566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73329566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73339566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73349566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73354e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73369566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73379566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73389566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73394e84afc0SStefano Zampini rmapt[cp] = 2; 73404e84afc0SStefano Zampini rmapa[cp] = globidx; 73414e84afc0SStefano Zampini cmapt[cp] = 2; 73424e84afc0SStefano Zampini cmapa[cp] = globidx; 73434e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73444e84afc0SStefano Zampini cp++; 73454e84afc0SStefano Zampini } else { 73469566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73479566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73489566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73499566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73509566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73519566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73524e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73539566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73549566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73559566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73564e84afc0SStefano Zampini rmapt[cp] = 1; 73574e84afc0SStefano Zampini cmapt[cp] = 2; 73584e84afc0SStefano Zampini cmapa[cp] = globidx; 73594e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73604e84afc0SStefano Zampini cp++; 73619566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73629566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73639566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73649566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73659566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73669566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73674e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73689566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73699566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73704e84afc0SStefano Zampini rmapt[cp] = 2; 73714e84afc0SStefano Zampini rmapa[cp] = p->garray; 73724e84afc0SStefano Zampini cmapt[cp] = 2; 73734e84afc0SStefano Zampini cmapa[cp] = globidx; 73744e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73754e84afc0SStefano Zampini cp++; 73764e84afc0SStefano Zampini } 73774e84afc0SStefano Zampini break; 73784e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73799566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73804e84afc0SStefano Zampini /* P is product->B */ 73819566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73829566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73839566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73849566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73859566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73869566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73879566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73884e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73899566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73909566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73919566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73924e84afc0SStefano Zampini rmapt[cp] = 2; 73934e84afc0SStefano Zampini rmapa[cp] = globidx; 73944e84afc0SStefano Zampini cmapt[cp] = 2; 73954e84afc0SStefano Zampini cmapa[cp] = globidx; 73964e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73974e84afc0SStefano Zampini cp++; 73984e84afc0SStefano Zampini if (mmdata->P_oth) { 73999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 74009566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7401f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 74029566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 74039566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 74049566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 74059566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74069566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74079566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74089566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74094e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74109566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74119566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74124e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 74134e84afc0SStefano Zampini cp++; 74149566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74159566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74169566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74179566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74189566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74199566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74204e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74219566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74229566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74234e84afc0SStefano Zampini rmapt[cp] = 2; 74244e84afc0SStefano Zampini rmapa[cp] = globidx; 74254e84afc0SStefano Zampini cmapt[cp] = 2; 74264e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74274e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74284e84afc0SStefano Zampini cp++; 74294e84afc0SStefano Zampini } 74304e84afc0SStefano Zampini break; 7431d71ae5a4SJacob Faibussowitsch default: 7432d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74334e84afc0SStefano Zampini } 74344e84afc0SStefano Zampini /* sanity check */ 74359371c9d4SSatish Balay if (size > 1) 74369371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74374e84afc0SStefano Zampini 74389566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7439ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7440ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7441ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7442ddea5d60SJunchao Zhang } 74434e84afc0SStefano Zampini mmdata->cp = cp; 74444e84afc0SStefano Zampini C->product->data = mmdata; 74454e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74464e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74474e84afc0SStefano Zampini 7448c215019aSStefano Zampini /* memory type */ 7449c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74509566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7451d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7453c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7454d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74553214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7456c215019aSStefano Zampini 74574e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7458ddea5d60SJunchao Zhang 7459ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7460ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7461ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7462ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7463ddea5d60SJunchao Zhang */ 74644e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74654e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74664e84afc0SStefano Zampini if (mptmp[cp]) continue; 7467ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74684e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74694e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74704e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74714e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74724e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74734e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74744e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74754e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7476ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7477ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74784e84afc0SStefano Zampini } 74794e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74804e84afc0SStefano Zampini } 7481ddea5d60SJunchao Zhang 7482ddea5d60SJunchao Zhang /* 7483ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7484ddea5d60SJunchao Zhang 7485ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7486ddea5d60SJunchao Zhang 7487d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7488ddea5d60SJunchao Zhang 7489ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7490ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7491ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7492ddea5d60SJunchao Zhang 7493ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7494da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7495ddea5d60SJunchao Zhang */ 74969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74979566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7498ddea5d60SJunchao Zhang 7499ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7500ddea5d60SJunchao Zhang if (hasoffproc) { 75014e84afc0SStefano Zampini PetscSF msf; 75024e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 75034e84afc0SStefano Zampini 75049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 75059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 75069566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7507ddea5d60SJunchao Zhang 75084e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 75094e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75104e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 75114e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7512ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 75134e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75144e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75154e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75164e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75174e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75184e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75194e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75204e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75214e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75224e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75234e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75244e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75254e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7526ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75274e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75284e84afc0SStefano Zampini *coi++ = gr; 75294e84afc0SStefano Zampini *idxoff++ = j; 75304e84afc0SStefano Zampini } 75314e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75324e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75334e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75344e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75354e84afc0SStefano Zampini } else { /* offdiag */ 75364e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75374e84afc0SStefano Zampini } 75384e84afc0SStefano Zampini ncoo_o += nz; 7539ddea5d60SJunchao Zhang } else { /* this is a local row */ 75404e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75414e84afc0SStefano Zampini } 75424e84afc0SStefano Zampini } 75434e84afc0SStefano Zampini } 75444e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75454e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75464e84afc0SStefano Zampini } 75474e84afc0SStefano Zampini 75489566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75499566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75509566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75519566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75524e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75549566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75559566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75569566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75579566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75589566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7559ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75609566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75614e84afc0SStefano Zampini coo_i = coo_i2; 75624e84afc0SStefano Zampini coo_j = coo_j2; 75634e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75644e84afc0SStefano Zampini ncoo = ncoo_d; 75659566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7566c215019aSStefano Zampini 75679566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75689566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75699566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75704e84afc0SStefano Zampini } 7571c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75724e84afc0SStefano Zampini 7573ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75744e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75754e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75764e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75774e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75784e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75794e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75804e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75814e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75824e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75834e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75844e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75854e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75864e84afc0SStefano Zampini 75874e84afc0SStefano Zampini if (mptmp[cp]) continue; 7588ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7589ddea5d60SJunchao Zhang /* fill coo_i */ 75904e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75914e84afc0SStefano Zampini const PetscInt gr = i + rs; 75924e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75934e84afc0SStefano Zampini } 7594ddea5d60SJunchao Zhang /* fill coo_j */ 7595ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75969566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7597ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7598ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7599ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76004e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 76014e84afc0SStefano Zampini } 76024e84afc0SStefano Zampini ncoo_d += mm->nz; 7603ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 76044e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76054e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 76064e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 76074e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7608ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 76094e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7610ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76114e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 76124e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 76134e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7614ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76154e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76164e84afc0SStefano Zampini } 76174e84afc0SStefano Zampini ncoo_d += nz; 76184e84afc0SStefano Zampini } 76194e84afc0SStefano Zampini } 76204e84afc0SStefano Zampini } 76214e84afc0SStefano Zampini } 762248a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76239566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 762448a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76259566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7626ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76279566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76284e84afc0SStefano Zampini 76294e84afc0SStefano Zampini /* preallocate with COO data */ 76309566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76319566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76334e84afc0SStefano Zampini } 76344e84afc0SStefano Zampini 7635d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7636d71ae5a4SJacob Faibussowitsch { 76374e84afc0SStefano Zampini Mat_Product *product = mat->product; 76384e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76394e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7640abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76414e84afc0SStefano Zampini #else 76424e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76434e84afc0SStefano Zampini #endif 76444e84afc0SStefano Zampini 76454e84afc0SStefano Zampini PetscFunctionBegin; 76464e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76474e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 764848a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 764965e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7650abb89eb1SStefano Zampini switch (product->type) { 7651abb89eb1SStefano Zampini case MATPRODUCT_AB: 7652abb89eb1SStefano Zampini if (product->api_user) { 7653d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76549566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7655d0609cedSBarry Smith PetscOptionsEnd(); 7656abb89eb1SStefano Zampini } else { 7657d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76589566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7659d0609cedSBarry Smith PetscOptionsEnd(); 7660abb89eb1SStefano Zampini } 7661abb89eb1SStefano Zampini break; 7662abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7663abb89eb1SStefano Zampini if (product->api_user) { 7664d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76659566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7666d0609cedSBarry Smith PetscOptionsEnd(); 7667abb89eb1SStefano Zampini } else { 7668d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76699566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7670d0609cedSBarry Smith PetscOptionsEnd(); 7671abb89eb1SStefano Zampini } 7672abb89eb1SStefano Zampini break; 7673abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7674abb89eb1SStefano Zampini if (product->api_user) { 7675d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76769566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7677d0609cedSBarry Smith PetscOptionsEnd(); 7678abb89eb1SStefano Zampini } else { 7679d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76809566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7681d0609cedSBarry Smith PetscOptionsEnd(); 7682abb89eb1SStefano Zampini } 7683abb89eb1SStefano Zampini break; 7684d71ae5a4SJacob Faibussowitsch default: 7685d71ae5a4SJacob Faibussowitsch break; 7686abb89eb1SStefano Zampini } 7687abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7688abb89eb1SStefano Zampini } 76894e84afc0SStefano Zampini #endif 76904e84afc0SStefano Zampini if (match) { 76914e84afc0SStefano Zampini switch (product->type) { 76924e84afc0SStefano Zampini case MATPRODUCT_AB: 76934e84afc0SStefano Zampini case MATPRODUCT_AtB: 7694d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7695d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7696d71ae5a4SJacob Faibussowitsch break; 7697d71ae5a4SJacob Faibussowitsch default: 7698d71ae5a4SJacob Faibussowitsch break; 76994e84afc0SStefano Zampini } 77004e84afc0SStefano Zampini } 77014e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 77029566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 77033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 770481824310SBarry Smith } 770598921bdaSJacob Faibussowitsch 770698921bdaSJacob Faibussowitsch /* 770772833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 770872833a62Smarkadams4 770972833a62Smarkadams4 n - the number of block indices in cc[] 771072833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 771172833a62Smarkadams4 */ 7712d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7713d71ae5a4SJacob Faibussowitsch { 771472833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 771572833a62Smarkadams4 const PetscInt *idx; 771672833a62Smarkadams4 771772833a62Smarkadams4 PetscFunctionBegin; 771872833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 771972833a62Smarkadams4 if (nidx) { 772072833a62Smarkadams4 cnt = 0; 772172833a62Smarkadams4 cc[cnt] = idx[0] / bs; 772272833a62Smarkadams4 for (j = 1; j < nidx; j++) { 772372833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 772472833a62Smarkadams4 } 772572833a62Smarkadams4 } 772672833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 772772833a62Smarkadams4 *n = cnt + 1; 77283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772972833a62Smarkadams4 } 773072833a62Smarkadams4 773172833a62Smarkadams4 /* 773272833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 773372833a62Smarkadams4 773472833a62Smarkadams4 ncollapsed - the number of block indices 773572833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 773672833a62Smarkadams4 */ 7737d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7738d71ae5a4SJacob Faibussowitsch { 773972833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 774072833a62Smarkadams4 774172833a62Smarkadams4 PetscFunctionBegin; 774272833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 774372833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 774472833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 774572833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77469371c9d4SSatish Balay cprevtmp = cprev; 77479371c9d4SSatish Balay cprev = merged; 77489371c9d4SSatish Balay merged = cprevtmp; 774972833a62Smarkadams4 } 775072833a62Smarkadams4 *ncollapsed = nprev; 775172833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 775372833a62Smarkadams4 } 775472833a62Smarkadams4 77552d776b49SBarry Smith /* 775672833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 775772833a62Smarkadams4 775872833a62Smarkadams4 Input Parameter: 775972833a62Smarkadams4 . Amat - matrix 776072833a62Smarkadams4 - symmetrize - make the result symmetric 776172833a62Smarkadams4 + scale - scale with diagonal 776272833a62Smarkadams4 776372833a62Smarkadams4 Output Parameter: 776472833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 776572833a62Smarkadams4 776672833a62Smarkadams4 */ 7767e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7768d71ae5a4SJacob Faibussowitsch { 776972833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 777072833a62Smarkadams4 MPI_Comm comm; 777172833a62Smarkadams4 Mat Gmat; 777272833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 777372833a62Smarkadams4 Mat a, b, c; 777472833a62Smarkadams4 MatType jtype; 777572833a62Smarkadams4 777672833a62Smarkadams4 PetscFunctionBegin; 777772833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 777872833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 777972833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 778072833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 778172833a62Smarkadams4 nloc = (Iend - Istart) / bs; 778272833a62Smarkadams4 778372833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 778472833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 778572833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 778672833a62Smarkadams4 778772833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 778872833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 778972833a62Smarkadams4 implementation */ 779072833a62Smarkadams4 if (bs > 1) { 779172833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 779272833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 779372833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 779472833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 779572833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 779672833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 779772833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77982cf69117Smarkadams4 MatScalar *aa, val, *AA; 77992cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 78009371c9d4SSatish Balay if (isseqaij) { 78019371c9d4SSatish Balay a = Amat; 78029371c9d4SSatish Balay b = NULL; 78039371c9d4SSatish Balay } else { 780472833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 78059371c9d4SSatish Balay a = d->A; 78069371c9d4SSatish Balay b = d->B; 780772833a62Smarkadams4 } 780872833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 780972833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 781072833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 78112cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 781259ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 781359ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 781459ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 781559ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 781659ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 781772833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 781859ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 781959ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 782059ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 782159ee9f9fSPierre Jolivet else { 782259ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 782359ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 782459ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 782572833a62Smarkadams4 } 782659ee9f9fSPierre Jolivet } 782759ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 782859ee9f9fSPierre Jolivet } 782959ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 783072833a62Smarkadams4 if (!ok) { 783172833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 783259ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 783372833a62Smarkadams4 goto old_bs; 783472833a62Smarkadams4 } 783572833a62Smarkadams4 } 783672833a62Smarkadams4 } 783772833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 783872833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 783972833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78402cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 784172833a62Smarkadams4 // diag 784272833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 784372833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 784472833a62Smarkadams4 ai = aseq->i; 784572833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 784672833a62Smarkadams4 aj = aseq->j + ai[brow]; 784772833a62Smarkadams4 for (int k = 0; k < n; k += bs) { // block columns 784872833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 784972833a62Smarkadams4 val = 0; 7850e02fb3cdSMark Adams if (index_size == 0) { 785172833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 785272833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 785372833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // columns in block 785472833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 785572833a62Smarkadams4 } 785672833a62Smarkadams4 } 7857e02fb3cdSMark Adams } else { // use (index,index) value if provided 7858e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7859e02fb3cdSMark Adams int ii = index[iii]; 7860e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 7861e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // columns in block 7862e02fb3cdSMark Adams int jj = index[jjj]; 7863cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7864e02fb3cdSMark Adams } 7865e02fb3cdSMark Adams } 7866e02fb3cdSMark Adams } 786759ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 786872833a62Smarkadams4 AA[k / bs] = val; 786972833a62Smarkadams4 } 787072833a62Smarkadams4 grow = Istart / bs + brow / bs; 787166521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 787272833a62Smarkadams4 } 787372833a62Smarkadams4 // off-diag 787472833a62Smarkadams4 if (ismpiaij) { 787572833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 787672833a62Smarkadams4 const PetscScalar *vals; 787772833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 787872833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 787972833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 788072833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 788172833a62Smarkadams4 for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 788259ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 788372833a62Smarkadams4 AA[k / bs] = 0; 788472833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 788572833a62Smarkadams4 } 788672833a62Smarkadams4 nc = ncols / bs; 788772833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7888e02fb3cdSMark Adams if (index_size == 0) { 788972833a62Smarkadams4 for (int ii = 0; ii < bs; ii++) { // rows in block 789072833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 789172833a62Smarkadams4 for (int k = 0; k < ncols; k += bs) { 789272833a62Smarkadams4 for (int jj = 0; jj < bs; jj++) { // cols in block 789359ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax); 789472833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 789572833a62Smarkadams4 } 789672833a62Smarkadams4 } 789772833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 789872833a62Smarkadams4 } 7899e02fb3cdSMark Adams } else { // use (index,index) value if provided 7900e02fb3cdSMark Adams for (int iii = 0; iii < index_size; iii++) { // rows in block 7901e02fb3cdSMark Adams int ii = index[iii]; 7902e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 7903e02fb3cdSMark Adams for (int k = 0; k < ncols; k += bs) { 7904e02fb3cdSMark Adams for (int jjj = 0; jjj < index_size; jjj++) { // cols in block 7905e02fb3cdSMark Adams int jj = index[jjj]; 7906e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7907e02fb3cdSMark Adams } 7908e02fb3cdSMark Adams } 7909e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7910e02fb3cdSMark Adams } 7911e02fb3cdSMark Adams } 791272833a62Smarkadams4 grow = Istart / bs + brow / bs; 791366521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 791472833a62Smarkadams4 } 791572833a62Smarkadams4 } 791672833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 791772833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79182cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 791972833a62Smarkadams4 } else { 792072833a62Smarkadams4 const PetscScalar *vals; 792172833a62Smarkadams4 const PetscInt *idx; 792272833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 792372833a62Smarkadams4 old_bs: 792472833a62Smarkadams4 /* 792572833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 792672833a62Smarkadams4 */ 792772833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 792872833a62Smarkadams4 PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz)); 792972833a62Smarkadams4 if (isseqaij) { 793072833a62Smarkadams4 PetscInt max_d_nnz; 793172833a62Smarkadams4 /* 793272833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 793372833a62Smarkadams4 */ 793472833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 793572833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 793672833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 793748a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 793872833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 793972833a62Smarkadams4 } else if (ismpiaij) { 794072833a62Smarkadams4 Mat Daij, Oaij; 794172833a62Smarkadams4 const PetscInt *garray; 794272833a62Smarkadams4 PetscInt max_d_nnz; 794372833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 794472833a62Smarkadams4 /* 794572833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 794672833a62Smarkadams4 */ 794772833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 794872833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 794972833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 795048a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 795172833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 795272833a62Smarkadams4 /* 795372833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 795472833a62Smarkadams4 */ 795572833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 795672833a62Smarkadams4 o_nnz[jj] = 0; 795772833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 795872833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 795972833a62Smarkadams4 o_nnz[jj] += ncols; 796072833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 796172833a62Smarkadams4 } 796272833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 796372833a62Smarkadams4 } 796472833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 796572833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 796672833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 796772833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 796872833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 796972833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 797072833a62Smarkadams4 PetscInt dest_row = Ii / bs; 797172833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 797272833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 797372833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 797472833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 797572833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 797672833a62Smarkadams4 } 797772833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 797872833a62Smarkadams4 } 797972833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 798072833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 798172833a62Smarkadams4 } 798272833a62Smarkadams4 } else { 79832d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79842d776b49SBarry Smith else { 79852d776b49SBarry Smith Gmat = Amat; 79862d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79872d776b49SBarry Smith } 79889371c9d4SSatish Balay if (isseqaij) { 79899371c9d4SSatish Balay a = Gmat; 79909371c9d4SSatish Balay b = NULL; 79919371c9d4SSatish Balay } else { 799272833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79939371c9d4SSatish Balay a = d->A; 79949371c9d4SSatish Balay b = d->B; 799572833a62Smarkadams4 } 79962d776b49SBarry Smith if (filter >= 0 || scale) { 79972d776b49SBarry Smith /* take absolute value of each entry */ 799872833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 799972833a62Smarkadams4 MatInfo info; 800072833a62Smarkadams4 PetscScalar *avals; 800172833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 800272833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 800372833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 800472833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 800572833a62Smarkadams4 } 800672833a62Smarkadams4 } 80072d776b49SBarry Smith } 800872833a62Smarkadams4 if (symmetrize) { 8009b94d7dedSBarry Smith PetscBool isset, issym; 8010b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8011b94d7dedSBarry Smith if (!isset || !issym) { 801272833a62Smarkadams4 Mat matTrans; 801372833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80141fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 801572833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 801672833a62Smarkadams4 } 801772833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80182d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 801972833a62Smarkadams4 if (scale) { 802072833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 802172833a62Smarkadams4 Vec diag; 802272833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 802372833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 802472833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 802572833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 802672833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 802772833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 802872833a62Smarkadams4 } 802972833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80302d776b49SBarry Smith 80312d776b49SBarry Smith if (filter >= 0) { 80322ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80332ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80342d776b49SBarry Smith } 803572833a62Smarkadams4 *a_Gmat = Gmat; 80363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 803772833a62Smarkadams4 } 803872833a62Smarkadams4 803972833a62Smarkadams4 /* 804098921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 804198921bdaSJacob Faibussowitsch */ 804298921bdaSJacob Faibussowitsch 804398921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80449566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80459566063dSJacob Faibussowitsch #undef PetscCall 80469371c9d4SSatish Balay #define PetscCall(...) \ 80479371c9d4SSatish Balay do { \ 80485f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 804998921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 805098921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 805198921bdaSJacob Faibussowitsch return; \ 805298921bdaSJacob Faibussowitsch } \ 805398921bdaSJacob Faibussowitsch } while (0) 805498921bdaSJacob Faibussowitsch 805598921bdaSJacob Faibussowitsch #undef SETERRQ 80569371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80579371c9d4SSatish Balay do { \ 805898921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 805998921bdaSJacob Faibussowitsch return; \ 806098921bdaSJacob Faibussowitsch } while (0) 806198921bdaSJacob Faibussowitsch 806298921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 806398921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 806498921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 806598921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 806698921bdaSJacob Faibussowitsch #else 806798921bdaSJacob Faibussowitsch #endif 8068d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8069d71ae5a4SJacob Faibussowitsch { 807098921bdaSJacob Faibussowitsch Mat mat = *mmat; 807198921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 807298921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 807398921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 807498921bdaSJacob Faibussowitsch PetscScalar value; 807598921bdaSJacob Faibussowitsch 807698921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 807798921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80785f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 807998921bdaSJacob Faibussowitsch { 808098921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 808198921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 808298921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 808398921bdaSJacob Faibussowitsch 808498921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 808598921bdaSJacob Faibussowitsch Mat A = aij->A; 808698921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 808798921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 808898921bdaSJacob Faibussowitsch MatScalar *aa; 8089f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 809098921bdaSJacob Faibussowitsch Mat B = aij->B; 809198921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 809298921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 809398921bdaSJacob Faibussowitsch MatScalar *ba; 809498921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 809598921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 809698921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 809798921bdaSJacob Faibussowitsch 809898921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 809998921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 810098921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 810198921bdaSJacob Faibussowitsch 810298921bdaSJacob Faibussowitsch PetscFunctionBegin; 81039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 810598921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 810698921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81076bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 810898921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 810998921bdaSJacob Faibussowitsch row = im[i] - rstart; 811098921bdaSJacob Faibussowitsch lastcol1 = -1; 811198921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 811298921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 811398921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 811498921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 811598921bdaSJacob Faibussowitsch low1 = 0; 811698921bdaSJacob Faibussowitsch high1 = nrow1; 811798921bdaSJacob Faibussowitsch lastcol2 = -1; 811898921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 811998921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 812098921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 812198921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 812298921bdaSJacob Faibussowitsch low2 = 0; 812398921bdaSJacob Faibussowitsch high2 = nrow2; 812498921bdaSJacob Faibussowitsch 812598921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 812698921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 812798921bdaSJacob Faibussowitsch else value = v[i + j * m]; 812898921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 812998921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 813098921bdaSJacob Faibussowitsch col = in[j] - cstart; 813198921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 813298921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 813398921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 813463a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 813598921bdaSJacob Faibussowitsch } else { 813698921bdaSJacob Faibussowitsch if (mat->was_assembled) { 813748a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 813898921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8139eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 814098921bdaSJacob Faibussowitsch col--; 814198921bdaSJacob Faibussowitsch #else 814298921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 814398921bdaSJacob Faibussowitsch #endif 8144f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 81459566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIAIJ(mat)); 814698921bdaSJacob Faibussowitsch col = in[j]; 814798921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 814898921bdaSJacob Faibussowitsch B = aij->B; 814998921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81509371c9d4SSatish Balay bimax = b->imax; 81519371c9d4SSatish Balay bi = b->i; 81529371c9d4SSatish Balay bilen = b->ilen; 81539371c9d4SSatish Balay bj = b->j; 815498921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 815598921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 815698921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 815798921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 815898921bdaSJacob Faibussowitsch low2 = 0; 815998921bdaSJacob Faibussowitsch high2 = nrow2; 816098921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 816198921bdaSJacob Faibussowitsch ba = b->a; 816298921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 816398921bdaSJacob Faibussowitsch } 816498921bdaSJacob Faibussowitsch } else col = in[j]; 816598921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 816698921bdaSJacob Faibussowitsch } 816798921bdaSJacob Faibussowitsch } 816898921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 816998921bdaSJacob Faibussowitsch if (roworiented) { 81709566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 817198921bdaSJacob Faibussowitsch } else { 81729566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 817398921bdaSJacob Faibussowitsch } 817498921bdaSJacob Faibussowitsch } 817598921bdaSJacob Faibussowitsch } 81769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 817898921bdaSJacob Faibussowitsch } 817998921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 818098921bdaSJacob Faibussowitsch } 818172833a62Smarkadams4 818298921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 818398921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 818498921bdaSJacob Faibussowitsch * original definitions */ 81859566063dSJacob Faibussowitsch #undef PetscCall 818698921bdaSJacob Faibussowitsch #undef SETERRQ 8187