xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 4cc2b5b5fe4ffd09e5956b56d7cdc4f43e324103)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
926cec326SBarry Smith PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
1026cec326SBarry Smith {
1126cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1226cec326SBarry Smith 
1326cec326SBarry Smith   PetscFunctionBegin;
1426cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1526cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1626cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
1726cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
1826cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2026cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2126cec326SBarry Smith #else
2226cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
2326cec326SBarry Smith #endif
2426cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
2526cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
2626cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
2726cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
2826cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
2926cec326SBarry Smith 
3026cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3126cec326SBarry Smith 
3226cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
3326cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
3426cec326SBarry Smith 
3526cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
4126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
4326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
4526cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
4726cec326SBarry Smith #endif
4826cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
4926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
5026cec326SBarry Smith #endif
5126cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
5226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
5326cec326SBarry Smith #endif
5426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
5526cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
5626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
5726cec326SBarry Smith #endif
5826cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK)
5926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
6026cec326SBarry Smith #endif
6126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
6226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
6326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
6426cec326SBarry Smith #endif
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
6926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
7126cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
7326cec326SBarry Smith #endif
7426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
7626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
7726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
7926cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
8026cec326SBarry Smith }
8126cec326SBarry Smith 
8226cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
8326cec326SBarry Smith #define TYPE AIJ
8426cec326SBarry Smith #define TYPE_AIJ
8526cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
8626cec326SBarry Smith #undef TYPE
8726cec326SBarry Smith #undef TYPE_AIJ
8826cec326SBarry Smith 
89ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
90d71ae5a4SJacob Faibussowitsch {
918a9c020eSBarry Smith   Mat B;
928a9c020eSBarry Smith 
938a9c020eSBarry Smith   PetscFunctionBegin;
948a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
958a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
968a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
97501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
998a9c020eSBarry Smith }
1008a9c020eSBarry Smith 
101ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
102d71ae5a4SJacob Faibussowitsch {
1038a9c020eSBarry Smith   Mat B;
1048a9c020eSBarry Smith 
1058a9c020eSBarry Smith   PetscFunctionBegin;
1068a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1078a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
108501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1108a9c020eSBarry Smith }
1118a9c020eSBarry Smith 
11201bebe75SBarry Smith /*MC
11301bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
11401bebe75SBarry Smith 
11511a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
11611a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
11711a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
11801bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
11901bebe75SBarry Smith   the above preallocation routines for simplicity.
12001bebe75SBarry Smith 
12127430b45SBarry Smith    Options Database Key:
12211a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
12301bebe75SBarry Smith 
12411a5261eSBarry Smith   Developer Note:
1252ef1f0ffSBarry Smith   Level: beginner
1262ef1f0ffSBarry Smith 
12711a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
12801bebe75SBarry Smith    enough exist.
12901bebe75SBarry Smith 
1301cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
13101bebe75SBarry Smith M*/
13201bebe75SBarry Smith 
13301bebe75SBarry Smith /*MC
13401bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
13501bebe75SBarry Smith 
13611a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
13711a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
13811a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
13901bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14001bebe75SBarry Smith   the above preallocation routines for simplicity.
14101bebe75SBarry Smith 
14227430b45SBarry Smith    Options Database Key:
14311a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
14401bebe75SBarry Smith 
14501bebe75SBarry Smith   Level: beginner
14601bebe75SBarry Smith 
1471cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
14801bebe75SBarry Smith M*/
14901bebe75SBarry Smith 
150d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
151d71ae5a4SJacob Faibussowitsch {
152f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
153f74ef234SStefano Zampini 
154f74ef234SStefano Zampini   PetscFunctionBegin;
155d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
156b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
157f74ef234SStefano Zampini #endif
1581baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1591baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1603120d049SRichard Tran Mills 
1613120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1623120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1633120d049SRichard Tran Mills    * to differ from the parent matrix. */
1641baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1651baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
167f74ef234SStefano Zampini }
168f74ef234SStefano Zampini 
169ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
170d71ae5a4SJacob Faibussowitsch {
17126bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
17226bda2c4Sstefano_zampini 
17326bda2c4Sstefano_zampini   PetscFunctionBegin;
17446533700Sstefano_zampini   if (mat->A) {
1759566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1769566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
17746533700Sstefano_zampini   }
1783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17926bda2c4Sstefano_zampini }
18026bda2c4Sstefano_zampini 
181ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
182d71ae5a4SJacob Faibussowitsch {
18327d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
18427d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
18527d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
18627d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
187ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
18827d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
18927d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
19027d4218bSShri Abhyankar 
19127d4218bSShri Abhyankar   PetscFunctionBegin;
192f4259b30SLisandro Dalcin   *keptrows = NULL;
193ce496241SStefano Zampini 
19427d4218bSShri Abhyankar   ia = a->i;
19527d4218bSShri Abhyankar   ib = b->i;
1969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
1979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
19827d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
19927d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
20027d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
20127d4218bSShri Abhyankar     if (!na && !nb) {
20227d4218bSShri Abhyankar       cnt++;
20327d4218bSShri Abhyankar       goto ok1;
20427d4218bSShri Abhyankar     }
205ce496241SStefano Zampini     aa = aav + ia[i];
20627d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
20727d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
20827d4218bSShri Abhyankar     }
2098e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
21027d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
21127d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
21227d4218bSShri Abhyankar     }
21327d4218bSShri Abhyankar     cnt++;
21427d4218bSShri Abhyankar   ok1:;
21527d4218bSShri Abhyankar   }
2161c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
217ce496241SStefano Zampini   if (!n0rows) {
2189566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2203ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
221ce496241SStefano Zampini   }
2229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
22327d4218bSShri Abhyankar   cnt = 0;
22427d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22527d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22627d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22727d4218bSShri Abhyankar     if (!na && !nb) continue;
228ce496241SStefano Zampini     aa = aav + ia[i];
22927d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
23027d4218bSShri Abhyankar       if (aa[j] != 0.0) {
23127d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23227d4218bSShri Abhyankar         goto ok2;
23327d4218bSShri Abhyankar       }
23427d4218bSShri Abhyankar     }
2358e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23627d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23727d4218bSShri Abhyankar       if (bb[j] != 0.0) {
23827d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
23927d4218bSShri Abhyankar         goto ok2;
24027d4218bSShri Abhyankar       }
24127d4218bSShri Abhyankar     }
24227d4218bSShri Abhyankar   ok2:;
24327d4218bSShri Abhyankar   }
2449566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2469566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24827d4218bSShri Abhyankar }
24927d4218bSShri Abhyankar 
250ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
251d71ae5a4SJacob Faibussowitsch {
25299e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
25394342113SStefano Zampini   PetscBool   cong;
25499e65526SBarry Smith 
25599e65526SBarry Smith   PetscFunctionBegin;
2569566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
25794342113SStefano Zampini   if (Y->assembled && cong) {
2589566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
25999e65526SBarry Smith   } else {
2609566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
26199e65526SBarry Smith   }
2623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26399e65526SBarry Smith }
26499e65526SBarry Smith 
265ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
266d71ae5a4SJacob Faibussowitsch {
267f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
268f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
269f1f41ecbSJed Brown 
270f1f41ecbSJed Brown   PetscFunctionBegin;
2710298fd71SBarry Smith   *zrows = NULL;
2729566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2739566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
274f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2759566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
277f1f41ecbSJed Brown }
278f1f41ecbSJed Brown 
279ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
280d71ae5a4SJacob Faibussowitsch {
2810716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
282a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
2830716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
2840716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
2850716a85fSBarry Smith   PetscReal         *work;
286ce496241SStefano Zampini   const PetscScalar *dummy;
2870716a85fSBarry Smith 
2880716a85fSBarry Smith   PetscFunctionBegin;
2899566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
2909566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
2919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
2929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
2939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
2949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
295857cbf51SRichard Tran Mills   if (type == NORM_2) {
296ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
297ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
298857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
299ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
300ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
301857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
302ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
303ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
304857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
305ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
306ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
307857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
308ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
309ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
310857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
311857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
3121c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3130716a85fSBarry Smith   } else {
3141c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3150716a85fSBarry Smith   }
3169566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
317857cbf51SRichard Tran Mills   if (type == NORM_2) {
318a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
319857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
320a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3210716a85fSBarry Smith   }
3223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3230716a85fSBarry Smith }
3240716a85fSBarry Smith 
325ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
326d71ae5a4SJacob Faibussowitsch {
327e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
328e52d2c62SBarry Smith   IS              sis, gis;
329e52d2c62SBarry Smith   const PetscInt *isis, *igis;
330e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
331e52d2c62SBarry Smith 
332e52d2c62SBarry Smith   PetscFunctionBegin;
3339566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3349566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3359566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3369566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3379566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3389566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
339e52d2c62SBarry Smith 
3409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3419566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3429566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
343e52d2c62SBarry Smith   n = ngis + nsis;
3449566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3459566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
346e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3479566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
348e52d2c62SBarry Smith 
3499566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3509566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3519566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3529566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
354e52d2c62SBarry Smith }
355e52d2c62SBarry Smith 
356dd6ea824SBarry Smith /*
3570f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3589e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3590f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3600f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
36172fa4726SStefano Zampini has an order N integer array but is fast to access.
3629e25ed09SBarry Smith */
363d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
364d71ae5a4SJacob Faibussowitsch {
36544a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
366d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
367dbb450caSBarry Smith 
3683a40ed3dSBarry Smith   PetscFunctionBegin;
36908401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
370aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
371eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
372c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
373b1fc9764SSatish Balay #else
3749566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
375905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
376b1fc9764SSatish Balay #endif
3773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3789e25ed09SBarry Smith }
3799e25ed09SBarry Smith 
380d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
381a8f51744SPierre Jolivet   do { \
382db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
383db4deed7SKarl Rupp     else high1 = nrow1; \
384fd3458f5SBarry Smith     lastcol1 = col; \
385fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
386fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
387fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
388fd3458f5SBarry Smith       else low1 = t; \
389ba4e3ef2SSatish Balay     } \
390fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
391fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
392fd3458f5SBarry Smith       if (rp1[_i] == col) { \
3930c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
3940c0d7e18SFande Kong           ap1[_i] += value; \
3950c0d7e18SFande Kong           /* Not sure LogFlops will slow dow the code or not */ \
3960c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
3979371c9d4SSatish Balay         } else ap1[_i] = value; \
39830770e4dSSatish Balay         goto a_noinsert; \
3990520107fSSatish Balay       } \
4000520107fSSatish Balay     } \
4019371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4029371c9d4SSatish Balay       low1  = 0; \
4039371c9d4SSatish Balay       high1 = nrow1; \
4049371c9d4SSatish Balay       goto a_noinsert; \
4059371c9d4SSatish Balay     } \
4069371c9d4SSatish Balay     if (nonew == 1) { \
4079371c9d4SSatish Balay       low1  = 0; \
4089371c9d4SSatish Balay       high1 = nrow1; \
4099371c9d4SSatish Balay       goto a_noinsert; \
4109371c9d4SSatish Balay     } \
41108401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
412fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4139371c9d4SSatish Balay     N = nrow1++ - 1; \
4149371c9d4SSatish Balay     a->nz++; \
4159371c9d4SSatish Balay     high1++; \
4160520107fSSatish Balay     /* shift up all the later entries in this row */ \
4179566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4189566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
419fd3458f5SBarry Smith     rp1[_i] = col; \
420fd3458f5SBarry Smith     ap1[_i] = value; \
42130770e4dSSatish Balay   a_noinsert:; \
422fd3458f5SBarry Smith     ailen[row] = nrow1; \
423a8f51744SPierre Jolivet   } while (0)
4240a198c4cSBarry Smith 
425d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
426a8f51744SPierre Jolivet   do { \
427db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
428db4deed7SKarl Rupp     else high2 = nrow2; \
429fd3458f5SBarry Smith     lastcol2 = col; \
430fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
431fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
432fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
433fd3458f5SBarry Smith       else low2 = t; \
434ba4e3ef2SSatish Balay     } \
435fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
436fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
437fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4380c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4390c0d7e18SFande Kong           ap2[_i] += value; \
4400c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4419371c9d4SSatish Balay         } else ap2[_i] = value; \
44230770e4dSSatish Balay         goto b_noinsert; \
44330770e4dSSatish Balay       } \
44430770e4dSSatish Balay     } \
4459371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4469371c9d4SSatish Balay       low2  = 0; \
4479371c9d4SSatish Balay       high2 = nrow2; \
4489371c9d4SSatish Balay       goto b_noinsert; \
4499371c9d4SSatish Balay     } \
4509371c9d4SSatish Balay     if (nonew == 1) { \
4519371c9d4SSatish Balay       low2  = 0; \
4529371c9d4SSatish Balay       high2 = nrow2; \
4539371c9d4SSatish Balay       goto b_noinsert; \
4549371c9d4SSatish Balay     } \
45508401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
456fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4579371c9d4SSatish Balay     N = nrow2++ - 1; \
4589371c9d4SSatish Balay     b->nz++; \
4599371c9d4SSatish Balay     high2++; \
46030770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4619566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4629566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
463fd3458f5SBarry Smith     rp2[_i] = col; \
464fd3458f5SBarry Smith     ap2[_i] = value; \
46530770e4dSSatish Balay   b_noinsert:; \
466fd3458f5SBarry Smith     bilen[row] = nrow2; \
467a8f51744SPierre Jolivet   } while (0)
46830770e4dSSatish Balay 
469ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
470d71ae5a4SJacob Faibussowitsch {
4712fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4722fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4732fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
474fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4752fd7e33dSBarry Smith 
4762fd7e33dSBarry Smith   PetscFunctionBegin;
4772fd7e33dSBarry Smith   /* code only works for square matrices A */
4782fd7e33dSBarry Smith 
4792fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
4809566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
4812fd7e33dSBarry Smith   row = row - diag;
4822fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
4832fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
4842fd7e33dSBarry Smith   }
485fff043a9SJunchao Zhang   if (l) {
4869566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
4879566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
4889566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
489fff043a9SJunchao Zhang   }
4902fd7e33dSBarry Smith 
4912fd7e33dSBarry Smith   /* diagonal part */
492fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
4939566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
4949566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(aa + a->i[row], v + l, (a->i[row + 1] - a->i[row])));
4959566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
496fff043a9SJunchao Zhang   }
4972fd7e33dSBarry Smith 
4982fd7e33dSBarry Smith   /* right of diagonal part */
499fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5009566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5019566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5029566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
503fff043a9SJunchao Zhang   }
5043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5052fd7e33dSBarry Smith }
5062fd7e33dSBarry Smith 
507d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
508d71ae5a4SJacob Faibussowitsch {
50944a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
510071fcb05SBarry Smith   PetscScalar value = 0.0;
511d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
512d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
513ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5148a729477SBarry Smith 
5150520107fSSatish Balay   /* Some Variables required in the macro */
5164ee7247eSSatish Balay   Mat         A     = aij->A;
5174ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
51857809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
519ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
52030770e4dSSatish Balay   Mat         B                 = aij->B;
52130770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
522d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
523ce496241SStefano Zampini   MatScalar  *aa, *ba;
524fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5258d76821aSHong Zhang   PetscInt    nonew;
526a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5274ee7247eSSatish Balay 
5283a40ed3dSBarry Smith   PetscFunctionBegin;
5299566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5318a729477SBarry Smith   for (i = 0; i < m; i++) {
5325ef9f2a5SBarry Smith     if (im[i] < 0) continue;
53308401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5344b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5354b0e389bSBarry Smith       row      = im[i] - rstart;
536fd3458f5SBarry Smith       lastcol1 = -1;
5378e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5388e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
539fd3458f5SBarry Smith       rmax1    = aimax[row];
540fd3458f5SBarry Smith       nrow1    = ailen[row];
541fd3458f5SBarry Smith       low1     = 0;
542fd3458f5SBarry Smith       high1    = nrow1;
543fd3458f5SBarry Smith       lastcol2 = -1;
5448e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5458e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
546fd3458f5SBarry Smith       rmax2    = bimax[row];
547d498b1e9SBarry Smith       nrow2    = bilen[row];
548fd3458f5SBarry Smith       low2     = 0;
549fd3458f5SBarry Smith       high2    = nrow2;
550fd3458f5SBarry Smith 
5511eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
552071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
553c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
554fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
555fd3458f5SBarry Smith           col   = in[j] - cstart;
5568d76821aSHong Zhang           nonew = a->nonew;
557d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
558f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
559f7d195e4SLawrence Mitchell           continue;
560f7d195e4SLawrence Mitchell         } else {
561f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
562227d817aSBarry Smith           if (mat->was_assembled) {
56348a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
564aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
565eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
566fa46199cSSatish Balay             col--;
567b1fc9764SSatish Balay #else
568905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
569b1fc9764SSatish Balay #endif
570f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
5719566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIAIJ(mat));               /* Change aij->B from reduced/local format to expanded/global format */
5724b0e389bSBarry Smith               col = in[j];
5739bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
574f9508a3cSSatish Balay               B     = aij->B;
575f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5769371c9d4SSatish Balay               bimax = b->imax;
5779371c9d4SSatish Balay               bi    = b->i;
5789371c9d4SSatish Balay               bilen = b->ilen;
5799371c9d4SSatish Balay               bj    = b->j;
5809371c9d4SSatish Balay               ba    = b->a;
581cff58d65SJunchao Zhang               rp2   = PetscSafePointerPlusOffset(bj, bi[row]);
582cff58d65SJunchao Zhang               ap2   = PetscSafePointerPlusOffset(ba, bi[row]);
583d498b1e9SBarry Smith               rmax2 = bimax[row];
584d498b1e9SBarry Smith               nrow2 = bilen[row];
585d498b1e9SBarry Smith               low2  = 0;
586d498b1e9SBarry Smith               high2 = nrow2;
587d0f46423SBarry Smith               bm    = aij->B->rmap->n;
588f9508a3cSSatish Balay               ba    = b->a;
589d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
590f4f49eeaSPierre Jolivet               if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) {
5919566063dSJacob Faibussowitsch                 PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
59298921bdaSJacob Faibussowitsch               } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
5930587a0fcSBarry Smith             }
594c48de900SBarry Smith           } else col = in[j];
5958d76821aSHong Zhang           nonew = b->nonew;
596d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
5971eb62cbbSBarry Smith         }
5981eb62cbbSBarry Smith       }
5995ef9f2a5SBarry Smith     } else {
60028b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
60190f02eecSBarry Smith       if (!aij->donotstash) {
6025080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
603d36fbae8SSatish Balay         if (roworiented) {
6048e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
605d36fbae8SSatish Balay         } else {
6068e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6074b0e389bSBarry Smith         }
6081eb62cbbSBarry Smith       }
6098a729477SBarry Smith     }
61090f02eecSBarry Smith   }
6115519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6129566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6148a729477SBarry Smith }
6158a729477SBarry Smith 
6162b08fdbeSandi selinger /*
617904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6182b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
619904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6202b08fdbeSandi selinger */
621d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
622d71ae5a4SJacob Faibussowitsch {
623904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
624904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6254cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
626904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
627904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
628904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
629904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
630904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6316dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
632904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
633904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
634904d1e70Sandi selinger 
635904d1e70Sandi selinger   PetscFunctionBegin;
636904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
637904d1e70Sandi selinger   for (j = 0; j < am; j++) {
638904d1e70Sandi selinger     dnz = onz = 0;
639904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6406dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
641904d1e70Sandi selinger       /* If column is in the diagonal */
642904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
643904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
644904d1e70Sandi selinger         dnz++;
645904d1e70Sandi selinger       } else { /* off-diagonal entries */
646904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
647904d1e70Sandi selinger         onz++;
648904d1e70Sandi selinger       }
649904d1e70Sandi selinger     }
650904d1e70Sandi selinger     ailen[j] = dnz;
651904d1e70Sandi selinger     bilen[j] = onz;
652904d1e70Sandi selinger   }
6533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
654904d1e70Sandi selinger }
655904d1e70Sandi selinger 
656904d1e70Sandi selinger /*
657904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
658904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6591de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6601de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6611de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
662904d1e70Sandi selinger */
663d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
664d71ae5a4SJacob Faibussowitsch {
6653a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6663a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6674cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
668f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6693a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6703a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6713a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6723a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6733a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6746dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6751de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
676904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
677904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
6783a063d27Sandi selinger 
6793a063d27Sandi selinger   PetscFunctionBegin;
6803a063d27Sandi selinger   /* Iterate over all rows of the matrix */
6813a063d27Sandi selinger   for (j = 0; j < am; j++) {
682904d1e70Sandi selinger     dnz_row = onz_row = 0;
683904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
684904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
685e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
686e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
687ae8e66a0Sandi selinger       /* If column is in the diagonal */
6883a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
689904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
690904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
691904d1e70Sandi selinger         dnz_row++;
692ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
693904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
694904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
695904d1e70Sandi selinger         onz_row++;
6963a063d27Sandi selinger       }
6973a063d27Sandi selinger     }
698904d1e70Sandi selinger     ailen[j] = dnz_row;
699904d1e70Sandi selinger     bilen[j] = onz_row;
7003a063d27Sandi selinger   }
7013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7023a063d27Sandi selinger }
7033a063d27Sandi selinger 
704ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
705d71ae5a4SJacob Faibussowitsch {
706b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
707d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
708d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
709b49de8d1SLois Curfman McInnes 
7103a40ed3dSBarry Smith   PetscFunctionBegin;
711b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
71254c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
71354c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
71485835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
715b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
716b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
71754c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
71854c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
719b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
720b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7219566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
722fa852ad4SSatish Balay       } else {
72348a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
724aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
725eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
726fa46199cSSatish Balay         col--;
727b1fc9764SSatish Balay #else
728905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
729b1fc9764SSatish Balay #endif
730e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
73148a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
732b49de8d1SLois Curfman McInnes       }
733b49de8d1SLois Curfman McInnes     }
734b49de8d1SLois Curfman McInnes   }
7353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
736b49de8d1SLois Curfman McInnes }
737bc5ccf88SSatish Balay 
738ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
739d71ae5a4SJacob Faibussowitsch {
740bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
741b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
742bc5ccf88SSatish Balay 
743bc5ccf88SSatish Balay   PetscFunctionBegin;
7443ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
745bc5ccf88SSatish Balay 
7469566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7479566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
7489566063dSJacob Faibussowitsch   PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
750bc5ccf88SSatish Balay }
751bc5ccf88SSatish Balay 
752d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
753d71ae5a4SJacob Faibussowitsch {
754bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
755b1d57f15SBarry Smith   PetscMPIInt  n;
756b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
757e44c0bd4SBarry Smith   PetscInt    *row, *col;
758ace3abfcSBarry Smith   PetscBool    other_disassembled;
75987828ca2SBarry Smith   PetscScalar *val;
760bc5ccf88SSatish Balay 
76191c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7626e111a19SKarl Rupp 
763bc5ccf88SSatish Balay   PetscFunctionBegin;
7644cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
765a2d1c673SSatish Balay     while (1) {
7669566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
767a2d1c673SSatish Balay       if (!flg) break;
768a2d1c673SSatish Balay 
769bc5ccf88SSatish Balay       for (i = 0; i < n;) {
770bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7712205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7722205254eSKarl Rupp           if (row[j] != rstart) break;
7732205254eSKarl Rupp         }
774bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
775bc5ccf88SSatish Balay         else ncols = n - i;
776bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7779566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
778bc5ccf88SSatish Balay         i = j;
779bc5ccf88SSatish Balay       }
780bc5ccf88SSatish Balay     }
7819566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
782bc5ccf88SSatish Balay   }
7838c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
784c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
7859ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
7869ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
7879566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
7889566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
7899ecce9b1SRichard Tran Mills   }
790e2cf4d64SStefano Zampini #endif
7919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
7929566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
793bc5ccf88SSatish Balay 
794bc5ccf88SSatish Balay   /* determine if any processor has disassembled, if so we must
795071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
796bc5ccf88SSatish Balay   /*
797bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
798bc5ccf88SSatish Balay      no processor disassembled thus we can skip this stuff
799bc5ccf88SSatish Balay   */
800bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
8015f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
80235cb6cd3SPierre Jolivet     if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
8039566063dSJacob Faibussowitsch       PetscCall(MatDisAssemble_MPIAIJ(mat));
804ad59fb31SSatish Balay     }
805ad59fb31SSatish Balay   }
80648a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8079566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8088c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
809c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
810e2cf4d64SStefano Zampini #endif
8119566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
813bc5ccf88SSatish Balay 
8149566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8152205254eSKarl Rupp 
816f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
817a30b2313SHong Zhang 
8189566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
819e56f5c9eSBarry Smith 
8204f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
821f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
822e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
8231c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
824e56f5c9eSBarry Smith   }
8258c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
826c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
827e2cf4d64SStefano Zampini #endif
8283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
829bc5ccf88SSatish Balay }
830bc5ccf88SSatish Balay 
831ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
832d71ae5a4SJacob Faibussowitsch {
83344a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8343a40ed3dSBarry Smith 
8353a40ed3dSBarry Smith   PetscFunctionBegin;
8369566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8379566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8391eb62cbbSBarry Smith }
8401eb62cbbSBarry Smith 
841ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
842d71ae5a4SJacob Faibussowitsch {
8431b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8441b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8456e520ac8SStefano Zampini   PetscInt    r, len;
8469939a2d1SBarry Smith   PetscBool   cong;
8471eb62cbbSBarry Smith 
8483a40ed3dSBarry Smith   PetscFunctionBegin;
8496e520ac8SStefano Zampini   /* get locally owned rows */
8509566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8519566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
852dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
85397b48c8fSBarry Smith   if (x && b) {
8541b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8551b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8561b1dd7adSMatthew G. Knepley 
85728b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8589566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8599566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8601b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8619566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8629566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
86397b48c8fSBarry Smith   }
864a92ad425SStefano Zampini 
865a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8669566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8679566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
868a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
869a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
870a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
871a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
872a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
873a92ad425SStefano Zampini 
874a92ad425SStefano Zampini     nnwA = aijA->nonew;
875a92ad425SStefano Zampini     nnwB = aijB->nonew;
876a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
877a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
878a92ad425SStefano Zampini     if (!nnzA) {
8799566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
880a92ad425SStefano Zampini       aijA->nonew = 0;
881a92ad425SStefano Zampini     }
882a92ad425SStefano Zampini     if (!nnzB) {
8839566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
884a92ad425SStefano Zampini       aijB->nonew = 0;
885a92ad425SStefano Zampini     }
886a92ad425SStefano Zampini     /* Must zero here before the next loop */
8879566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
8889566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
8891b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
8901b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
891a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
8929566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
893e2d53e46SBarry Smith     }
894a92ad425SStefano Zampini     aijA->nonew = nnwA;
895a92ad425SStefano Zampini     aijB->nonew = nnwB;
8966eb55b6aSBarry Smith   } else {
8979566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
8989566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
8996eb55b6aSBarry Smith   }
9009566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9019566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9034f9cfa9eSBarry Smith 
9049939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
905f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9069939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
9079939a2d1SBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9089939a2d1SBarry Smith   }
9093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9101eb62cbbSBarry Smith }
9111eb62cbbSBarry Smith 
912ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
913d71ae5a4SJacob Faibussowitsch {
9149c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9155ba17502SJed Brown   PetscMPIInt        n = A->rmap->n;
916131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
91754bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
918131c27b5Sprj-   PetscMPIInt        p = 0;
91954bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
92054bd4135SMatthew G. Knepley   PetscSF            sf;
9219c7c4993SBarry Smith   const PetscScalar *xx;
922fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
923564f14d6SBarry Smith   Vec                xmask, lmask;
924564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
925564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
926564f14d6SBarry Smith   PetscScalar       *aa;
9279c7c4993SBarry Smith 
9289c7c4993SBarry Smith   PetscFunctionBegin;
92954bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
93154bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
93354bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
93454bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
935aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9365ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9379566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9385ba17502SJed Brown     }
93954bd4135SMatthew G. Knepley     rrows[r].rank  = p;
94054bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9419c7c4993SBarry Smith   }
9429566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9439566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
94454bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9459566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9469566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9479566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
94854bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9499371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9509371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
951564f14d6SBarry Smith   /* zero diagonal part of matrix */
9529566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9534cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9549566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9559566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9569566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
95754bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9599566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9609566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9619566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
962a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
963a92ad425SStefano Zampini     PetscBool cong;
964a92ad425SStefano Zampini 
9659566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
96628b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9679566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9689566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9699566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9709566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
971377aa5a1SBarry Smith   }
9729566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9734cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
975564f14d6SBarry Smith   ii = aij->i;
9768e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
977564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
978564f14d6SBarry Smith   if (aij->compressedrow.use) {
979564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
980564f14d6SBarry Smith     ii   = aij->compressedrow.i;
981564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
982564f14d6SBarry Smith     for (i = 0; i < m; i++) {
983564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
984564f14d6SBarry Smith       aj = aij->j + ii[i];
985fff043a9SJunchao Zhang       aa = aij_a + ii[i];
986564f14d6SBarry Smith 
987564f14d6SBarry Smith       for (j = 0; j < n; j++) {
98825266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
989377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
990564f14d6SBarry Smith           *aa = 0.0;
991564f14d6SBarry Smith         }
992564f14d6SBarry Smith         aa++;
993564f14d6SBarry Smith         aj++;
994564f14d6SBarry Smith       }
995564f14d6SBarry Smith       ridx++;
996564f14d6SBarry Smith     }
997564f14d6SBarry Smith   } else { /* do not use compressed row format */
998564f14d6SBarry Smith     m = l->B->rmap->n;
999564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1000564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1001564f14d6SBarry Smith       aj = aij->j + ii[i];
1002fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1003564f14d6SBarry Smith       for (j = 0; j < n; j++) {
100425266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1005377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1006564f14d6SBarry Smith           *aa = 0.0;
1007564f14d6SBarry Smith         }
1008564f14d6SBarry Smith         aa++;
1009564f14d6SBarry Smith         aj++;
1010564f14d6SBarry Smith       }
1011564f14d6SBarry Smith     }
1012564f14d6SBarry Smith   }
1013a92ad425SStefano Zampini   if (x && b) {
10149566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10159566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1016377aa5a1SBarry Smith   }
10179566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10189566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10199566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10209566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10214f9cfa9eSBarry Smith 
10224f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1023f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10244f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
10251c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10264f9cfa9eSBarry Smith   }
10273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10289c7c4993SBarry Smith }
10299c7c4993SBarry Smith 
1030ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1031d71ae5a4SJacob Faibussowitsch {
1032416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1033b1d57f15SBarry Smith   PetscInt    nt;
103419b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1035416022c9SBarry Smith 
10363a40ed3dSBarry Smith   PetscFunctionBegin;
10379566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
103808401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10399566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1040296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10419566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1042296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10441eb62cbbSBarry Smith }
10451eb62cbbSBarry Smith 
1046ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1047d71ae5a4SJacob Faibussowitsch {
1048bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1049bd0c2dcbSBarry Smith 
1050bd0c2dcbSBarry Smith   PetscFunctionBegin;
10519566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1053bd0c2dcbSBarry Smith }
1054bd0c2dcbSBarry Smith 
1055ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1056d71ae5a4SJacob Faibussowitsch {
1057416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
105801ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10593a40ed3dSBarry Smith 
10603a40ed3dSBarry Smith   PetscFunctionBegin;
10619566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10629566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10639566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10649566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1066da3a660dSBarry Smith }
1067da3a660dSBarry Smith 
1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1069d71ae5a4SJacob Faibussowitsch {
1070416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1071da3a660dSBarry Smith 
10723a40ed3dSBarry Smith   PetscFunctionBegin;
1073da3a660dSBarry Smith   /* do nondiagonal part */
10749566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1075da3a660dSBarry Smith   /* do local part */
10769566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10779613dc34SJunchao Zhang   /* add partial results together */
10789566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10799566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
10803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1081da3a660dSBarry Smith }
1082da3a660dSBarry Smith 
1083ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1084d71ae5a4SJacob Faibussowitsch {
10854f423910Svictorle   MPI_Comm    comm;
1086ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1087ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1088cd0d46ebSvictorle   IS          Me, Notme;
1089b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
109054d735aeSStefano Zampini   PetscBool   lf;
1091b1d57f15SBarry Smith   PetscMPIInt size;
1092cd0d46ebSvictorle 
1093cd0d46ebSvictorle   PetscFunctionBegin;
109442e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
10959566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
10961c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
10973ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
10989566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
10999566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11003ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
110142e5f5b4Svictorle 
11027dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11039566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11049566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1106cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1107cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11089566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11099566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11109566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
111166501d38Svictorle   Aoff = Aoffs[0];
11129566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
111366501d38Svictorle   Boff = Boffs[0];
11149566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11159566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11169566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11179566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11189566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11199566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1121cd0d46ebSvictorle }
1122cd0d46ebSvictorle 
1123ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1124d71ae5a4SJacob Faibussowitsch {
1125416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1126da3a660dSBarry Smith 
11273a40ed3dSBarry Smith   PetscFunctionBegin;
1128da3a660dSBarry Smith   /* do nondiagonal part */
11299566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1130da3a660dSBarry Smith   /* do local part */
11319566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11329613dc34SJunchao Zhang   /* add partial results together */
11339566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11349566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1136da3a660dSBarry Smith }
1137da3a660dSBarry Smith 
11381eb62cbbSBarry Smith /*
11391eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11401eb62cbbSBarry Smith    diagonal block
11411eb62cbbSBarry Smith */
1142ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1143d71ae5a4SJacob Faibussowitsch {
1144416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11453a40ed3dSBarry Smith 
11463a40ed3dSBarry Smith   PetscFunctionBegin;
114708401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1148aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11499566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11511eb62cbbSBarry Smith }
11521eb62cbbSBarry Smith 
1153ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1154d71ae5a4SJacob Faibussowitsch {
1155052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11563a40ed3dSBarry Smith 
11573a40ed3dSBarry Smith   PetscFunctionBegin;
11589566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11599566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1161052efed2SBarry Smith }
1162052efed2SBarry Smith 
1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1164d71ae5a4SJacob Faibussowitsch {
11658e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11668e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11678e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11683ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11692e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
117017a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
117117a3732bSBarry Smith   PetscInt64         nz, hnz;
11723ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11733ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11743ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
117517a3732bSBarry Smith   PetscMPIInt        rank;
11768e2fed03SBarry Smith 
11778e2fed03SBarry Smith   PetscFunctionBegin;
11789566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
11793ea6fe3dSLisandro Dalcin 
11803ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
11813ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
11823ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
11833ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
11843ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
11858e2fed03SBarry Smith   nz = A->nz + B->nz;
11863ea6fe3dSLisandro Dalcin 
11873ea6fe3dSLisandro Dalcin   /* write matrix header */
11880700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
11899371c9d4SSatish Balay   header[1] = M;
11909371c9d4SSatish Balay   header[2] = N;
119117a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
119217a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
119338b83642SBarry Smith   if (rank == 0) {
119438b83642SBarry Smith     if (hnz > PETSC_MAX_INT) header[3] = PETSC_MAX_INT;
119538b83642SBarry Smith     else header[3] = (PetscInt)hnz;
119638b83642SBarry Smith   }
11979566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
11988e2fed03SBarry Smith 
11993ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12013ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12029566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12039566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12048e2fed03SBarry Smith 
12053ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12069566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12073ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12083ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12093ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12103ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12118e2fed03SBarry Smith     }
12129371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12139371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12148e2fed03SBarry Smith   }
121517a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12169566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12179566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12188e2fed03SBarry Smith 
12193ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12209566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12233ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12243ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12253ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12262e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12278e2fed03SBarry Smith     }
12289371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12299371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12308e2fed03SBarry Smith   }
12319566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
123317a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12349566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12359566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12368e2fed03SBarry Smith 
12373ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12389566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12408e2fed03SBarry Smith }
12418e2fed03SBarry Smith 
12429804daf3SBarry Smith #include <petscdraw.h>
1243ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1244d71ae5a4SJacob Faibussowitsch {
124544a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
124632dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
1247ace3abfcSBarry Smith   PetscBool         isdraw, iascii, isbinary;
1248b0a32e0cSBarry Smith   PetscViewer       sviewer;
1249f3ef73ceSBarry Smith   PetscViewerFormat format;
1250416022c9SBarry Smith 
12513a40ed3dSBarry Smith   PetscFunctionBegin;
12529566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12539566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12549566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
125532077d6dSBarry Smith   if (iascii) {
12569566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1257ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
1258f4f49eeaSPierre Jolivet       PetscInt i, nmax = 0, nmin = PETSC_MAX_INT, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12599566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12609566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1261ef5fdb51SBarry Smith       for (i = 0; i < (PetscInt)size; i++) {
1262ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1263ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1264ef5fdb51SBarry Smith         navg += nz[i];
1265ef5fdb51SBarry Smith       }
12669566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1267ef5fdb51SBarry Smith       navg = navg / size;
12689566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12693ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1270ef5fdb51SBarry Smith     }
12719566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1272456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12734e220ebcSLois Curfman McInnes       MatInfo   info;
12746335e310SSatish Balay       PetscInt *inodes = NULL;
1275923f20ffSKris Buschelman 
12769566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12779566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12789566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12799566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1280923f20ffSKris Buschelman       if (!inodes) {
12819371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12829371c9d4SSatish Balay                                                      (double)info.memory));
12836831982aSBarry Smith       } else {
12849371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
12859371c9d4SSatish Balay                                                      (double)info.memory));
12866831982aSBarry Smith       }
12879566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
12889566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12899566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
12909566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
12919566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
12929566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
12939566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
12949566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
12953ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1296fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1297923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
12989566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1299923f20ffSKris Buschelman       if (inodes) {
13009566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1301d38fa0fbSBarry Smith       } else {
13029566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1303d38fa0fbSBarry Smith       }
13043ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13054aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13063ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
130708480c60SBarry Smith     }
13088e2fed03SBarry Smith   } else if (isbinary) {
13098e2fed03SBarry Smith     if (size == 1) {
13109566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13119566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13128e2fed03SBarry Smith     } else {
13139566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13148e2fed03SBarry Smith     }
13153ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
131671e56450SStefano Zampini   } else if (iascii && size == 1) {
13179566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13189566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13193ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13200f5bd95cSBarry Smith   } else if (isdraw) {
1321b0a32e0cSBarry Smith     PetscDraw draw;
1322ace3abfcSBarry Smith     PetscBool isnull;
13239566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13249566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13253ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
132619bcc07fSBarry Smith   }
132719bcc07fSBarry Smith 
132871e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
132971e56450SStefano Zampini     Mat A = NULL, Av;
133071e56450SStefano Zampini     IS  isrow, iscol;
13312ee70a88SLois Curfman McInnes 
13329566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13339566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13349566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13359566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
133671e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
133771e56450SStefano Zampini     /*
133871e56450SStefano Zampini     Mat *AA, A = NULL, Av;
133971e56450SStefano Zampini     IS  isrow,iscol;
134071e56450SStefano Zampini 
13419566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13429566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13439566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1344dd400576SPatrick Sanan     if (rank == 0) {
13459566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
134671e56450SStefano Zampini        A    = AA[0];
134771e56450SStefano Zampini        Av   = AA[0];
134895373324SBarry Smith     }
13499566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
135071e56450SStefano Zampini */
13519566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13529566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
135355843e3eSBarry Smith     /*
135455843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1355b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
135655843e3eSBarry Smith     */
13579566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1358dd400576SPatrick Sanan     if (rank == 0) {
135948a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13609566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
136195373324SBarry Smith     }
13629566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13639566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
136495373324SBarry Smith   }
13653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13661eb62cbbSBarry Smith }
13671eb62cbbSBarry Smith 
1368d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1369d71ae5a4SJacob Faibussowitsch {
1370ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
1371416022c9SBarry Smith 
13723a40ed3dSBarry Smith   PetscFunctionBegin;
13739566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
13749566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13759566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13769566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
137748a46eb9SPierre Jolivet   if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1379416022c9SBarry Smith }
1380416022c9SBarry Smith 
1381ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1382d71ae5a4SJacob Faibussowitsch {
138344a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1384f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1385ace3abfcSBarry Smith   PetscBool   hasop;
13868a729477SBarry Smith 
13873a40ed3dSBarry Smith   PetscFunctionBegin;
1388a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
13899566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
13903ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1391a2b30743SBarry Smith   }
1392a2b30743SBarry Smith 
139348a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
13944e980039SJed Brown 
1395c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1396da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
13979566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
13982798e883SHong Zhang       its--;
1399da3a660dSBarry Smith     }
14002798e883SHong Zhang 
14012798e883SHong Zhang     while (its--) {
14029566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14039566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14042798e883SHong Zhang 
1405c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14069566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14079566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14082798e883SHong Zhang 
1409c14dc6b6SHong Zhang       /* local sweep */
14109566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14112798e883SHong Zhang     }
14123a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1413da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14149566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14152798e883SHong Zhang       its--;
1416da3a660dSBarry Smith     }
14172798e883SHong Zhang     while (its--) {
14189566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14199566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14202798e883SHong Zhang 
1421c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14229566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14239566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1424c14dc6b6SHong Zhang 
1425c14dc6b6SHong Zhang       /* local sweep */
14269566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14272798e883SHong Zhang     }
14283a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1429da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14309566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14312798e883SHong Zhang       its--;
1432da3a660dSBarry Smith     }
14332798e883SHong Zhang     while (its--) {
14349566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14359566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14362798e883SHong Zhang 
1437c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14389566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14399566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14402798e883SHong Zhang 
1441c14dc6b6SHong Zhang       /* local sweep */
14429566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14432798e883SHong Zhang     }
1444a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1445a7420bb7SBarry Smith     Vec xx1;
1446a7420bb7SBarry Smith 
14479566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14489566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1449a7420bb7SBarry Smith 
14509566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14519566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1452a7420bb7SBarry Smith     if (!mat->diag) {
14539566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14549566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1455a7420bb7SBarry Smith     }
14569566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1457bd0c2dcbSBarry Smith     if (hasop) {
14589566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1459bd0c2dcbSBarry Smith     } else {
14609566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1461bd0c2dcbSBarry Smith     }
14629566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1463887ee2caSBarry Smith 
14649566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1465a7420bb7SBarry Smith 
1466a7420bb7SBarry Smith     /* local sweep */
14679566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14689566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14699566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1470ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1471c14dc6b6SHong Zhang 
14729566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1473a0808db4SHong Zhang 
14747b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14768a729477SBarry Smith }
1477a66be287SLois Curfman McInnes 
1478ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1479d71ae5a4SJacob Faibussowitsch {
148072e6a0cfSJed Brown   Mat             aA, aB, Aperm;
148172e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
148272e6a0cfSJed Brown   PetscScalar    *aa, *ba;
148372e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
148472e6a0cfSJed Brown   PetscSF         rowsf, sf;
14850298fd71SBarry Smith   IS              parcolp = NULL;
148672e6a0cfSJed Brown   PetscBool       done;
148742e855d1Svictor 
148842e855d1Svictor   PetscFunctionBegin;
14899566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
14909566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
14919566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
14929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
149372e6a0cfSJed Brown 
149472e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
14959566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
14969566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
14979566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
149872e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
14999566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15009566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
150172e6a0cfSJed Brown 
150272e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15039566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15049566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15059566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
150672e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15079566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15089566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15099566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
151072e6a0cfSJed Brown 
15119566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15129566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15139566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
151472e6a0cfSJed Brown 
151572e6a0cfSJed Brown   /* Find out where my gcols should go */
15169566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15199566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15209566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15219566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152472e6a0cfSJed Brown 
15259566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15269566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15279566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
152872e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1529131c27b5Sprj-     PetscInt    row = rdest[i];
1530131c27b5Sprj-     PetscMPIInt rowner;
15319566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
153272e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1533131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1534131c27b5Sprj-       PetscMPIInt cowner;
15359566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
153672e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
153772e6a0cfSJed Brown       else onnz[i]++;
153872e6a0cfSJed Brown     }
153972e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1540131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1541131c27b5Sprj-       PetscMPIInt cowner;
15429566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
154372e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
154472e6a0cfSJed Brown       else onnz[i]++;
154572e6a0cfSJed Brown     }
154672e6a0cfSJed Brown   }
15479566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15489566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15499566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15509566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15519566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
155272e6a0cfSJed Brown 
15539566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15549566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15559566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
155672e6a0cfSJed Brown   for (i = 0; i < m; i++) {
155772e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1558970468b0SJed Brown     PetscInt  j0, rowlen;
155972e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1560970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1561970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15629566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1563970468b0SJed Brown     }
156472e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1565970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1566970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15679566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1568970468b0SJed Brown     }
156972e6a0cfSJed Brown   }
15709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15729566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15739566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15769566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15779566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15789566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15799566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
158072e6a0cfSJed Brown   *B = Aperm;
15813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
158242e855d1Svictor }
158342e855d1Svictor 
1584ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1585d71ae5a4SJacob Faibussowitsch {
1586c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1587c5e4d11fSDmitry Karpeev 
1588c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
15899566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1590c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
15913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1592c5e4d11fSDmitry Karpeev }
1593c5e4d11fSDmitry Karpeev 
1594ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1595d71ae5a4SJacob Faibussowitsch {
1596a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1597a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
15983966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1599a66be287SLois Curfman McInnes 
16003a40ed3dSBarry Smith   PetscFunctionBegin;
16014e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16029566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16032205254eSKarl Rupp 
16049371c9d4SSatish Balay   isend[0] = info->nz_used;
16059371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16069371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16079371c9d4SSatish Balay   isend[3] = info->memory;
16089371c9d4SSatish Balay   isend[4] = info->mallocs;
16092205254eSKarl Rupp 
16109566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16112205254eSKarl Rupp 
16129371c9d4SSatish Balay   isend[0] += info->nz_used;
16139371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16149371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16159371c9d4SSatish Balay   isend[3] += info->memory;
16169371c9d4SSatish Balay   isend[4] += info->mallocs;
1617a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16184e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16194e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16204e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16214e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16224e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1623a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
16241c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16252205254eSKarl Rupp 
16264e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16274e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16284e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16294e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16304e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1631a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
16321c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16332205254eSKarl Rupp 
16344e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16354e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16364e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16374e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16384e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1639a66be287SLois Curfman McInnes   }
16404e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16414e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16424e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1644a66be287SLois Curfman McInnes }
1645a66be287SLois Curfman McInnes 
1646d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1647d71ae5a4SJacob Faibussowitsch {
1648c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1649c74985f6SBarry Smith 
16503a40ed3dSBarry Smith   PetscFunctionBegin;
165112c028f9SKris Buschelman   switch (op) {
1652512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
165312c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
165428b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1655a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
165612c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16570ad02fcaSStefano Zampini   case MAT_USE_INODES:
165812c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16591a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1660fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16619566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16629566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
166312c028f9SKris Buschelman     break;
166412c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
166543674050SBarry Smith     MatCheckPreallocated(A, 1);
16664e0d8c25SBarry Smith     a->roworiented = flg;
16672205254eSKarl Rupp 
16689566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16699566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
167012c028f9SKris Buschelman     break;
16718c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1672d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1673d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1674d71ae5a4SJacob Faibussowitsch     break;
1675d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1676d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1677d71ae5a4SJacob Faibussowitsch     break;
1678c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1679ffa07934SHong Zhang   case MAT_SPD:
168077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
168177e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1682bf108f30SBarry Smith   case MAT_HERMITIAN:
1683bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1684b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1685b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1686b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
168777e54ba9SKris Buschelman     break;
1688d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1689d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1690d71ae5a4SJacob Faibussowitsch     break;
1691957cac9fSHong Zhang   case MAT_STRUCTURE_ONLY:
1692957cac9fSHong Zhang     /* The option is handled directly by MatSetOption() */
1693957cac9fSHong Zhang     break;
1694d71ae5a4SJacob Faibussowitsch   default:
1695d71ae5a4SJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %d", op);
16963a40ed3dSBarry Smith   }
16973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1698c74985f6SBarry Smith }
1699c74985f6SBarry Smith 
1700d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1701d71ae5a4SJacob Faibussowitsch {
1702154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
170387828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1704d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1705d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1706b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
170739e00950SLois Curfman McInnes 
17083a40ed3dSBarry Smith   PetscFunctionBegin;
170928b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17107a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17117a0afa10SBarry Smith 
171270f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17137a0afa10SBarry Smith     /*
17147a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17157a0afa10SBarry Smith     */
17167a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1717b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1718d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17197a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17202205254eSKarl Rupp       if (max < tmp) max = tmp;
17217a0afa10SBarry Smith     }
17229566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17237a0afa10SBarry Smith   }
17247a0afa10SBarry Smith 
1725aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1726abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
172739e00950SLois Curfman McInnes 
17289371c9d4SSatish Balay   pvA = &vworkA;
17299371c9d4SSatish Balay   pcA = &cworkA;
17309371c9d4SSatish Balay   pvB = &vworkB;
17319371c9d4SSatish Balay   pcB = &cworkB;
17329371c9d4SSatish Balay   if (!v) {
17339371c9d4SSatish Balay     pvA = NULL;
17349371c9d4SSatish Balay     pvB = NULL;
17359371c9d4SSatish Balay   }
17369371c9d4SSatish Balay   if (!idx) {
17379371c9d4SSatish Balay     pcA = NULL;
17389371c9d4SSatish Balay     if (!v) pcB = NULL;
17399371c9d4SSatish Balay   }
17409566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17419566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1742154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1743154123eaSLois Curfman McInnes 
174470f0671dSBarry Smith   cmap = mat->garray;
1745154123eaSLois Curfman McInnes   if (v || idx) {
1746154123eaSLois Curfman McInnes     if (nztot) {
1747154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1748b1d57f15SBarry Smith       PetscInt imark = -1;
1749154123eaSLois Curfman McInnes       if (v) {
175070f0671dSBarry Smith         *v = v_p = mat->rowvalues;
175139e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
175270f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1753154123eaSLois Curfman McInnes           else break;
1754154123eaSLois Curfman McInnes         }
1755154123eaSLois Curfman McInnes         imark = i;
175670f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
175770f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1758154123eaSLois Curfman McInnes       }
1759154123eaSLois Curfman McInnes       if (idx) {
176070f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
176170f0671dSBarry Smith         if (imark > -1) {
1762ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
176370f0671dSBarry Smith         } else {
1764154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
176570f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1766154123eaSLois Curfman McInnes             else break;
1767154123eaSLois Curfman McInnes           }
1768154123eaSLois Curfman McInnes           imark = i;
176970f0671dSBarry Smith         }
177070f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
177170f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
177239e00950SLois Curfman McInnes       }
17733f97c4b0SBarry Smith     } else {
1774f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1775f4259b30SLisandro Dalcin       if (v) *v = NULL;
17761ca473b0SSatish Balay     }
1777154123eaSLois Curfman McInnes   }
177839e00950SLois Curfman McInnes   *nz = nztot;
17799566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17809566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
178239e00950SLois Curfman McInnes }
178339e00950SLois Curfman McInnes 
1784d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1785d71ae5a4SJacob Faibussowitsch {
17867a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
17873a40ed3dSBarry Smith 
17883a40ed3dSBarry Smith   PetscFunctionBegin;
178928b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
17907a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
17913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179239e00950SLois Curfman McInnes }
179339e00950SLois Curfman McInnes 
1794ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1795d71ae5a4SJacob Faibussowitsch {
1796855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1797ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
1798d0f46423SBarry Smith   PetscInt         i, j, cstart = mat->cmap->rstart;
1799329f5518SBarry Smith   PetscReal        sum = 0.0;
1800fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
180104ca555eSLois Curfman McInnes 
18023a40ed3dSBarry Smith   PetscFunctionBegin;
180317699dbbSLois Curfman McInnes   if (aij->size == 1) {
18049566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
180537fa93a5SLois Curfman McInnes   } else {
18069566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18079566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
180804ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1809fff043a9SJunchao Zhang       v = amata;
181004ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18119371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18129371c9d4SSatish Balay         v++;
181304ca555eSLois Curfman McInnes       }
1814fff043a9SJunchao Zhang       v = bmata;
181504ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18169371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18179371c9d4SSatish Balay         v++;
181804ca555eSLois Curfman McInnes       }
18191c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18208f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18219566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18223a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
1823329f5518SBarry Smith       PetscReal *tmp, *tmp2;
1824b1d57f15SBarry Smith       PetscInt  *jj, *garray = aij->garray;
18259566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp));
18269566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N + 1, &tmp2));
182704ca555eSLois Curfman McInnes       *norm = 0.0;
18289371c9d4SSatish Balay       v     = amata;
18299371c9d4SSatish Balay       jj    = amat->j;
183004ca555eSLois Curfman McInnes       for (j = 0; j < amat->nz; j++) {
18319371c9d4SSatish Balay         tmp[cstart + *jj++] += PetscAbsScalar(*v);
18329371c9d4SSatish Balay         v++;
183304ca555eSLois Curfman McInnes       }
18349371c9d4SSatish Balay       v  = bmata;
18359371c9d4SSatish Balay       jj = bmat->j;
183604ca555eSLois Curfman McInnes       for (j = 0; j < bmat->nz; j++) {
18379371c9d4SSatish Balay         tmp[garray[*jj++]] += PetscAbsScalar(*v);
18389371c9d4SSatish Balay         v++;
183904ca555eSLois Curfman McInnes       }
18401c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
1841d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
184204ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
184304ca555eSLois Curfman McInnes       }
18449566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
18459566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
18469566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
18473a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1848329f5518SBarry Smith       PetscReal ntemp = 0.0;
1849d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18508e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
185104ca555eSLois Curfman McInnes         sum = 0.0;
185204ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18539371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18549371c9d4SSatish Balay           v++;
185504ca555eSLois Curfman McInnes         }
18568e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
185704ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18589371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18599371c9d4SSatish Balay           v++;
186004ca555eSLois Curfman McInnes         }
1861515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
186204ca555eSLois Curfman McInnes       }
18631c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18649566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1865ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18669566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18679566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
186837fa93a5SLois Curfman McInnes   }
18693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1870855ac2c5SLois Curfman McInnes }
1871855ac2c5SLois Curfman McInnes 
1872ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1873d71ae5a4SJacob Faibussowitsch {
1874a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1875a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1876071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1877071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1878a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1879ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1880b7c46309SBarry Smith 
18813a40ed3dSBarry Smith   PetscFunctionBegin;
18827fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18839371c9d4SSatish Balay   ma = A->rmap->n;
18849371c9d4SSatish Balay   na = A->cmap->n;
18859371c9d4SSatish Balay   mb = a->B->rmap->n;
18869371c9d4SSatish Balay   nb = a->B->cmap->n;
18879371c9d4SSatish Balay   ai = Aloc->i;
18889371c9d4SSatish Balay   aj = Aloc->j;
18899371c9d4SSatish Balay   bi = Bloc->i;
18909371c9d4SSatish Balay   bj = Bloc->j;
1891fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
189280bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
189380bcc5a1SJed Brown     PetscSFNode         *oloc;
1894713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
189580bcc5a1SJed Brown 
18969566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
189780bcc5a1SJed Brown     /* compute d_nnz for preallocation */
18989566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1899cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
190080bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19019566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
190280bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
190380bcc5a1SJed Brown     /* map those to global */
19049566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19059566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19069566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19079566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
190857168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
190957168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19109566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1911d4bb536fSBarry Smith 
19129566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19139566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
19149566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, PetscAbs(A->cmap->bs), PetscAbs(A->rmap->bs)));
19159566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19169566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19179566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1918fc4dec0aSBarry Smith   } else {
1919fc4dec0aSBarry Smith     B = *matout;
19209566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1921fc4dec0aSBarry Smith   }
1922b7c46309SBarry Smith 
1923f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1924a8661f62Sandi selinger   A_diag      = a->A;
1925a8661f62Sandi selinger   B_diag      = &b->A;
1926a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1927a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1928a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1929a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1930f79cb1a0Sandi selinger 
1931f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1932ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1933f79cb1a0Sandi selinger 
19344cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1935a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19367fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19379566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1938f79cb1a0Sandi selinger 
1939b7c46309SBarry Smith   /* copy over the B part */
19409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19419566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1942ce496241SStefano Zampini   pbv = bv;
1943d0f46423SBarry Smith   row = A->rmap->rstart;
19442205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
194561a2fbbaSHong Zhang   cols_tmp = cols;
1946da668accSHong Zhang   for (i = 0; i < mb; i++) {
1947da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19489566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19492205254eSKarl Rupp     row++;
1950720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1951720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1952b7c46309SBarry Smith   }
19539566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19549566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1955fc73b1b3SBarry Smith 
19569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19579566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1958cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19590de55854SLois Curfman McInnes     *matout = B;
19600de55854SLois Curfman McInnes   } else {
19619566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19620de55854SLois Curfman McInnes   }
19633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1964b7c46309SBarry Smith }
1965b7c46309SBarry Smith 
1966ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1967d71ae5a4SJacob Faibussowitsch {
19684b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19694b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1970b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1971a008b906SSatish Balay 
19723a40ed3dSBarry Smith   PetscFunctionBegin;
19739566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19744b967eb1SSatish Balay   if (rr) {
19759566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
197608401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19774b967eb1SSatish Balay     /* Overlap communication with computation. */
19789566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1979a008b906SSatish Balay   }
19804b967eb1SSatish Balay   if (ll) {
19819566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
198208401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1983dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19844b967eb1SSatish Balay   }
19854b967eb1SSatish Balay   /* scale  the diagonal block */
1986dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19874b967eb1SSatish Balay 
19884b967eb1SSatish Balay   if (rr) {
19894b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
19909566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1991dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
19924b967eb1SSatish Balay   }
19933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1994a008b906SSatish Balay }
1995a008b906SSatish Balay 
1996ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
1997d71ae5a4SJacob Faibussowitsch {
1998bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
19993a40ed3dSBarry Smith 
20003a40ed3dSBarry Smith   PetscFunctionBegin;
20019566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2003bb5a7306SBarry Smith }
2004bb5a7306SBarry Smith 
2005ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2006d71ae5a4SJacob Faibussowitsch {
2007d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2008d4bb536fSBarry Smith   Mat         a, b, c, d;
2009ace3abfcSBarry Smith   PetscBool   flg;
2010d4bb536fSBarry Smith 
20113a40ed3dSBarry Smith   PetscFunctionBegin;
20129371c9d4SSatish Balay   a = matA->A;
20139371c9d4SSatish Balay   b = matA->B;
20149371c9d4SSatish Balay   c = matB->A;
20159371c9d4SSatish Balay   d = matB->B;
2016d4bb536fSBarry Smith 
20179566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
201848a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
20191c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2021d4bb536fSBarry Smith }
2022d4bb536fSBarry Smith 
2023ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2024d71ae5a4SJacob Faibussowitsch {
2025cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2026cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2027cb5b572fSBarry Smith 
2028cb5b572fSBarry Smith   PetscFunctionBegin;
202933f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
203033f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2031cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2032cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2033cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2034cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2035cb5b572fSBarry Smith        then copying the submatrices */
20369566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2037cb5b572fSBarry Smith   } else {
20389566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20399566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2040cb5b572fSBarry Smith   }
20419566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2043cb5b572fSBarry Smith }
2044cb5b572fSBarry Smith 
2045001ddc4fSHong Zhang /*
2046001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2047001ddc4fSHong Zhang    have different nonzero structure.
2048001ddc4fSHong Zhang */
2049d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2050d71ae5a4SJacob Faibussowitsch {
2051001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
205295b7e79eSJed Brown 
205395b7e79eSJed Brown   PetscFunctionBegin;
205495b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
205595b7e79eSJed Brown   for (i = 0; i < m; i++) {
20568e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2057001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2058001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
205995b7e79eSJed Brown     nnz[i] = 0;
206095b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2061001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2062001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
206395b7e79eSJed Brown       nnz[i]++;
206495b7e79eSJed Brown     }
206595b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
206695b7e79eSJed Brown   }
20673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
206895b7e79eSJed Brown }
206995b7e79eSJed Brown 
2070001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2071d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2072d71ae5a4SJacob Faibussowitsch {
2073001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2074001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2075001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2076001ddc4fSHong Zhang 
2077001ddc4fSHong Zhang   PetscFunctionBegin;
20789566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2080001ddc4fSHong Zhang }
2081001ddc4fSHong Zhang 
2082ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2083d71ae5a4SJacob Faibussowitsch {
2084ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2085ac90fabeSBarry Smith 
2086ac90fabeSBarry Smith   PetscFunctionBegin;
2087ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
20889566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
20899566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2090ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
20919566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2092ac90fabeSBarry Smith   } else {
20939f5f6813SShri Abhyankar     Mat       B;
20949f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2095d9d719b4SStefano Zampini 
20969566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
20979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
20989566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
20999566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21009566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21019566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21029566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21039566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21049566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21059566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21069566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21079566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21089566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2109ac90fabeSBarry Smith   }
21103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2111ac90fabeSBarry Smith }
2112ac90fabeSBarry Smith 
21132726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2114354c94deSBarry Smith 
2115ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2116d71ae5a4SJacob Faibussowitsch {
21175f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
21185f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
2119354c94deSBarry Smith     Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2120354c94deSBarry Smith 
21219566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->A));
21229566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqAIJ(aij->B));
21235f80ce2aSJacob Faibussowitsch   }
21243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2125354c94deSBarry Smith }
2126354c94deSBarry Smith 
2127ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2128d71ae5a4SJacob Faibussowitsch {
212999cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
213099cafbc1SBarry Smith 
213199cafbc1SBarry Smith   PetscFunctionBegin;
21329566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21339566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
213599cafbc1SBarry Smith }
213699cafbc1SBarry Smith 
2137ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2138d71ae5a4SJacob Faibussowitsch {
213999cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214099cafbc1SBarry Smith 
214199cafbc1SBarry Smith   PetscFunctionBegin;
21429566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21439566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214599cafbc1SBarry Smith }
214699cafbc1SBarry Smith 
2147ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2148d71ae5a4SJacob Faibussowitsch {
2149c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2150475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
2151475b8b61SHong Zhang   PetscScalar       *va, *vv;
2152475b8b61SHong Zhang   Vec                vB, vA;
2153475b8b61SHong Zhang   const PetscScalar *vb;
2154c91732d9SHong Zhang 
2155c91732d9SHong Zhang   PetscFunctionBegin;
2156c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21579566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2158475b8b61SHong Zhang 
21599566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
2160c91732d9SHong Zhang   if (idx) {
2161475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2162d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2163c91732d9SHong Zhang     }
2164c91732d9SHong Zhang   }
2165c91732d9SHong Zhang 
2166c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21689566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2169c91732d9SHong Zhang 
21709566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21719566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2172475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2173c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2174475b8b61SHong Zhang       vv[i] = vb[i];
2175c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2176475b8b61SHong Zhang     } else {
2177475b8b61SHong Zhang       vv[i] = va[i];
21789371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2179c91732d9SHong Zhang     }
2180c91732d9SHong Zhang   }
21819566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
21829566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
21839566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21849566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21859566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21869566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2188c91732d9SHong Zhang }
2189c91732d9SHong Zhang 
2190eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2191eede4a3fSMark Adams {
2192eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2193eede4a3fSMark Adams   Vec         vB, vA;
2194eede4a3fSMark Adams 
2195eede4a3fSMark Adams   PetscFunctionBegin;
2196c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2197eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2198c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2199eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2200eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2201eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2202eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2203eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2204eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2205eede4a3fSMark Adams }
2206eede4a3fSMark Adams 
2207ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2208d71ae5a4SJacob Faibussowitsch {
2209f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2210f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2211f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2212f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2213f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2214f07e67edSHong Zhang   Vec                diagV, offdiagV;
2215ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2216ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2217f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2218f07e67edSHong Zhang   Mat                B = mat->B;
2219f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2220c87e5d42SMatthew Knepley 
2221c87e5d42SMatthew Knepley   PetscFunctionBegin;
2222f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2223f07e67edSHong Zhang   if (A->cmap->N == n) {
22249566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22259566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22269566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22279566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22289566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22293ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2230f07e67edSHong Zhang   } else if (n == 0) {
2231f07e67edSHong Zhang     if (m) {
22329566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22339371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22349371c9d4SSatish Balay         a[r] = 0.0;
22359371c9d4SSatish Balay         if (idx) idx[r] = -1;
22369371c9d4SSatish Balay       }
22379566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2238f07e67edSHong Zhang     }
22393ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2240f07e67edSHong Zhang   }
2241f07e67edSHong Zhang 
22429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22439566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22449566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22459566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2246f07e67edSHong Zhang 
2247f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22489566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2249ce496241SStefano Zampini   ba = bav;
2250f07e67edSHong Zhang   bi = b->i;
2251f07e67edSHong Zhang   bj = b->j;
22529566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2253f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2254f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2255f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22569371c9d4SSatish Balay       offdiagA[r]   = *ba;
22579371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2258f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2259f07e67edSHong Zhang       offdiagA[r] = 0.0;
2260f07e67edSHong Zhang 
2261f07e67edSHong Zhang       /* Find first hole in the cmap */
2262f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2263f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2264f07e67edSHong Zhang         if (col > j && j < cstart) {
2265f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2266f07e67edSHong Zhang           break;
2267f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2268f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2269f07e67edSHong Zhang           break;
2270f07e67edSHong Zhang         }
2271f07e67edSHong Zhang       }
22724e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2273f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2274f07e67edSHong Zhang         if (ncols == 0) {
2275f07e67edSHong Zhang           if (cstart) {
2276f07e67edSHong Zhang             offdiagIdx[r] = 0;
2277f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2278f07e67edSHong Zhang         } else { /* ncols > 0 */
2279f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2280f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2281f07e67edSHong Zhang         }
2282f07e67edSHong Zhang       }
2283f07e67edSHong Zhang     }
2284f07e67edSHong Zhang 
2285f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22869371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22879371c9d4SSatish Balay         offdiagA[r]   = *ba;
22889371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
22899371c9d4SSatish Balay       }
22909371c9d4SSatish Balay       ba++;
22919371c9d4SSatish Balay       bj++;
2292f07e67edSHong Zhang     }
2293f07e67edSHong Zhang   }
2294f07e67edSHong Zhang 
22959566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
22969566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2297f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2298f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2299f07e67edSHong Zhang       a[r] = diagA[r];
2300f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2301f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2302f07e67edSHong Zhang       a[r] = diagA[r];
2303c87e5d42SMatthew Knepley       if (idx) {
2304f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2305f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2306f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2307f07e67edSHong Zhang       }
2308f07e67edSHong Zhang     } else {
2309f07e67edSHong Zhang       a[r] = offdiagA[r];
2310f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2311c87e5d42SMatthew Knepley     }
2312c87e5d42SMatthew Knepley   }
23139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23149566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23159566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23169566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23179566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23189566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23199566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2321c87e5d42SMatthew Knepley }
2322c87e5d42SMatthew Knepley 
2323ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2324d71ae5a4SJacob Faibussowitsch {
232503bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2326fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2327fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
232803bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
232903bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
233003bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2331ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2332ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2333fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2334fa213d2fSHong Zhang   Mat                B = mat->B;
2335fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
233603bc72f1SMatthew Knepley 
233703bc72f1SMatthew Knepley   PetscFunctionBegin;
2338fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2339fa213d2fSHong Zhang   if (A->cmap->N == n) {
23409566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23419566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23429566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23439566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23449566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23453ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2346fa213d2fSHong Zhang   } else if (n == 0) {
2347fa213d2fSHong Zhang     if (m) {
23489566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23499371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23509371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23519371c9d4SSatish Balay         if (idx) idx[r] = -1;
23529371c9d4SSatish Balay       }
23539566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2354fa213d2fSHong Zhang     }
23553ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2356fa213d2fSHong Zhang   }
2357fa213d2fSHong Zhang 
23589566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23599566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23609566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23619566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2362fa213d2fSHong Zhang 
2363fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2365ce496241SStefano Zampini   ba = bav;
2366fa213d2fSHong Zhang   bi = b->i;
2367fa213d2fSHong Zhang   bj = b->j;
23689566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2369fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2370fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2371fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23729371c9d4SSatish Balay       offdiagA[r]   = *ba;
23739371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2374fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2375fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2376fa213d2fSHong Zhang 
2377fa213d2fSHong Zhang       /* Find first hole in the cmap */
2378fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2379fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2380fa213d2fSHong Zhang         if (col > j && j < cstart) {
2381fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2382fa213d2fSHong Zhang           break;
2383fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2384fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2385fa213d2fSHong Zhang           break;
2386fa213d2fSHong Zhang         }
2387fa213d2fSHong Zhang       }
23884e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2389fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2390fa213d2fSHong Zhang         if (ncols == 0) {
2391fa213d2fSHong Zhang           if (cstart) {
2392fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2393fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2394fa213d2fSHong Zhang         } else { /* ncols > 0 */
2395fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2396fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2397fa213d2fSHong Zhang         }
2398fa213d2fSHong Zhang       }
2399fa213d2fSHong Zhang     }
2400fa213d2fSHong Zhang 
2401fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24029371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24039371c9d4SSatish Balay         offdiagA[r]   = *ba;
24049371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24059371c9d4SSatish Balay       }
24069371c9d4SSatish Balay       ba++;
24079371c9d4SSatish Balay       bj++;
2408fa213d2fSHong Zhang     }
2409fa213d2fSHong Zhang   }
2410fa213d2fSHong Zhang 
24119566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24129566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2413fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2414fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
241503bc72f1SMatthew Knepley       a[r] = diagA[r];
2416fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2417fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2418fa213d2fSHong Zhang       a[r] = diagA[r];
2419fa213d2fSHong Zhang       if (idx) {
2420fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
242103bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2422fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2423fa213d2fSHong Zhang       }
242403bc72f1SMatthew Knepley     } else {
242503bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2426fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
242703bc72f1SMatthew Knepley     }
242803bc72f1SMatthew Knepley   }
24299566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24309566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24319566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24329566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24339566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24349566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24359566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
243703bc72f1SMatthew Knepley }
243803bc72f1SMatthew Knepley 
2439ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2440d71ae5a4SJacob Faibussowitsch {
2441c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24421a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24431a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2444c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2445c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2446c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2447ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2448ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24491a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24501a254869SHong Zhang   Mat                B = mat->B;
24511a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2452c87e5d42SMatthew Knepley 
2453c87e5d42SMatthew Knepley   PetscFunctionBegin;
24541a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24551a254869SHong Zhang   if (A->cmap->N == n) {
24569566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24579566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24589566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24599566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24609566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24613ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24621a254869SHong Zhang   } else if (n == 0) {
24631a254869SHong Zhang     if (m) {
24649566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24659371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24669371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24679371c9d4SSatish Balay         if (idx) idx[r] = -1;
24689371c9d4SSatish Balay       }
24699566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24701a254869SHong Zhang     }
24713ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24721a254869SHong Zhang   }
24731a254869SHong Zhang 
24749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24759566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24769566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24779566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24781a254869SHong Zhang 
24791a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24809566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2481ce496241SStefano Zampini   ba = bav;
24821a254869SHong Zhang   bi = b->i;
24831a254869SHong Zhang   bj = b->j;
24849566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24851a254869SHong Zhang   for (r = 0; r < m; r++) {
24861a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24871a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24889371c9d4SSatish Balay       offdiagA[r]   = *ba;
24899371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
24901a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
24911a254869SHong Zhang       offdiagA[r] = 0.0;
24921a254869SHong Zhang 
24931a254869SHong Zhang       /* Find first hole in the cmap */
24941a254869SHong Zhang       for (j = 0; j < ncols; j++) {
24951a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
24961a254869SHong Zhang         if (col > j && j < cstart) {
24971a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
24981a254869SHong Zhang           break;
24991a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25001a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25011a254869SHong Zhang           break;
25021a254869SHong Zhang         }
25031a254869SHong Zhang       }
25044e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25051a254869SHong Zhang         /* a hole is outside compressed Bcols */
25061a254869SHong Zhang         if (ncols == 0) {
25071a254869SHong Zhang           if (cstart) {
25081a254869SHong Zhang             offdiagIdx[r] = 0;
25091a254869SHong Zhang           } else offdiagIdx[r] = cend;
25101a254869SHong Zhang         } else { /* ncols > 0 */
25111a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25121a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25131a254869SHong Zhang         }
25141a254869SHong Zhang       }
25151a254869SHong Zhang     }
25161a254869SHong Zhang 
25171a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25189371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25199371c9d4SSatish Balay         offdiagA[r]   = *ba;
25209371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25219371c9d4SSatish Balay       }
25229371c9d4SSatish Balay       ba++;
25239371c9d4SSatish Balay       bj++;
25241a254869SHong Zhang     }
25251a254869SHong Zhang   }
25261a254869SHong Zhang 
25279566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25289566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25291a254869SHong Zhang   for (r = 0; r < m; ++r) {
25301a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2531c87e5d42SMatthew Knepley       a[r] = diagA[r];
25321a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25331a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25341a254869SHong Zhang       a[r] = diagA[r];
25351a254869SHong Zhang       if (idx) {
25361a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2537c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25381a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25391a254869SHong Zhang       }
2540c87e5d42SMatthew Knepley     } else {
2541c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25421a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2543c87e5d42SMatthew Knepley     }
2544c87e5d42SMatthew Knepley   }
25459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25469566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25479566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25489566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25499566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25509566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25519566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2553c87e5d42SMatthew Knepley }
2554c87e5d42SMatthew Knepley 
2555d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2556d71ae5a4SJacob Faibussowitsch {
2557f6d58c54SBarry Smith   Mat *dummy;
25585494a064SHong Zhang 
25595494a064SHong Zhang   PetscFunctionBegin;
25609566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2561f6d58c54SBarry Smith   *newmat = *dummy;
25629566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25645494a064SHong Zhang }
25655494a064SHong Zhang 
2566ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2567d71ae5a4SJacob Faibussowitsch {
2568bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2569bbead8a2SBarry Smith 
2570bbead8a2SBarry Smith   PetscFunctionBegin;
25719566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25727b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2574bbead8a2SBarry Smith }
2575bbead8a2SBarry Smith 
2576d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2577d71ae5a4SJacob Faibussowitsch {
257873a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
257973a71a0fSBarry Smith 
258073a71a0fSBarry Smith   PetscFunctionBegin;
258108401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25829566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2583679944adSJunchao Zhang   if (x->assembled) {
25849566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2585679944adSJunchao Zhang   } else {
25869566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2587679944adSJunchao Zhang   }
25889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
25899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
25903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
259173a71a0fSBarry Smith }
2592bbead8a2SBarry Smith 
2593ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2594d71ae5a4SJacob Faibussowitsch {
2595b1b1104fSBarry Smith   PetscFunctionBegin;
2596b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2597b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
25983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2599b1b1104fSBarry Smith }
2600b1b1104fSBarry Smith 
2601b1b1104fSBarry Smith /*@
2602f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2603f2afee66SBarry Smith 
26042ef1f0ffSBarry Smith   Not Collective
2605f2afee66SBarry Smith 
2606f2afee66SBarry Smith   Input Parameter:
2607f2afee66SBarry Smith . A - the matrix
2608f2afee66SBarry Smith 
2609f2afee66SBarry Smith   Output Parameter:
2610f2afee66SBarry Smith . nz - the number of nonzeros
2611f2afee66SBarry Smith 
2612f2afee66SBarry Smith   Level: advanced
2613f2afee66SBarry Smith 
2614fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2615f2afee66SBarry Smith @*/
2616d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2617d71ae5a4SJacob Faibussowitsch {
2618f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2619f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2620dfebb78cSStefano Zampini   PetscBool   isaij;
2621f2afee66SBarry Smith 
2622f2afee66SBarry Smith   PetscFunctionBegin;
2623dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2624dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2625f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2627f2afee66SBarry Smith }
2628f2afee66SBarry Smith 
2629f2afee66SBarry Smith /*@
2630b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2631b1b1104fSBarry Smith 
2632c3339decSBarry Smith   Collective
2633b1b1104fSBarry Smith 
2634b1b1104fSBarry Smith   Input Parameters:
2635b1b1104fSBarry Smith + A  - the matrix
263611a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2637b1b1104fSBarry Smith 
263896a0c994SBarry Smith   Level: advanced
263996a0c994SBarry Smith 
2640fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2641b1b1104fSBarry Smith @*/
2642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2643d71ae5a4SJacob Faibussowitsch {
2644b1b1104fSBarry Smith   PetscFunctionBegin;
2645cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2647b1b1104fSBarry Smith }
2648b1b1104fSBarry Smith 
2649d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems *PetscOptionsObject)
2650d71ae5a4SJacob Faibussowitsch {
2651b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2652b1b1104fSBarry Smith 
2653b1b1104fSBarry Smith   PetscFunctionBegin;
2654d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2655b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26569566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26571baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2658d0609cedSBarry Smith   PetscOptionsHeadEnd();
26593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2660b1b1104fSBarry Smith }
2661b1b1104fSBarry Smith 
2662ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2663d71ae5a4SJacob Faibussowitsch {
26647d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2665c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26667d68702bSBarry Smith 
26677d68702bSBarry Smith   PetscFunctionBegin;
2668c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26699566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26705519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2671b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26729566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2673b83222d8SBarry Smith     aij->nonew = nonew;
26747d68702bSBarry Smith   }
26759566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26777d68702bSBarry Smith }
26787d68702bSBarry Smith 
2679ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d)
2680d71ae5a4SJacob Faibussowitsch {
26813b49f96aSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
26823b49f96aSBarry Smith 
26833b49f96aSBarry Smith   PetscFunctionBegin;
268408401ef6SPierre Jolivet   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
26859566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
26863b49f96aSBarry Smith   if (d) {
26873b49f96aSBarry Smith     PetscInt rstart;
26889566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
26893b49f96aSBarry Smith     *d += rstart;
26903b49f96aSBarry Smith   }
26913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26923b49f96aSBarry Smith }
26933b49f96aSBarry Smith 
2694ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2695d71ae5a4SJacob Faibussowitsch {
2696a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2697a8ee9fb5SBarry Smith 
2698a8ee9fb5SBarry Smith   PetscFunctionBegin;
26999566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
27003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2701a8ee9fb5SBarry Smith }
27023b49f96aSBarry Smith 
270358c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2704dec0b466SHong Zhang {
2705dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2706dec0b466SHong Zhang 
2707dec0b466SHong Zhang   PetscFunctionBegin;
270858c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
270958c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2711dec0b466SHong Zhang }
2712dec0b466SHong Zhang 
2713cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2714cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2715cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2716cda55fadSBarry Smith                                        MatMult_MPIAIJ,
271797304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27187c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27197c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2720f4259b30SLisandro Dalcin                                        NULL,
2721f4259b30SLisandro Dalcin                                        NULL,
2722f4259b30SLisandro Dalcin                                        NULL,
2723f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2724f4259b30SLisandro Dalcin                                        NULL,
2725f4259b30SLisandro Dalcin                                        NULL,
272641f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2727b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
272897304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2729cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2730cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2731cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2732cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
273397304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2734cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2735cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2736cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2737d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2738f4259b30SLisandro Dalcin                                        NULL,
2739f4259b30SLisandro Dalcin                                        NULL,
2740f4259b30SLisandro Dalcin                                        NULL,
2741f4259b30SLisandro Dalcin                                        NULL,
274226cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2743f4259b30SLisandro Dalcin                                        NULL,
2744f4259b30SLisandro Dalcin                                        NULL,
2745a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2746f4259b30SLisandro Dalcin                                        NULL,
2747d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2748f4259b30SLisandro Dalcin                                        NULL,
2749f4259b30SLisandro Dalcin                                        NULL,
2750f4259b30SLisandro Dalcin                                        NULL,
2751f4259b30SLisandro Dalcin                                        NULL,
2752d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27537dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2754cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2755cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2756cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2757d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2758cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27597d68702bSBarry Smith                                        MatShift_MPIAIJ,
276099e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2761564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
276273a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27638a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27648a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2765f4259b30SLisandro Dalcin                                        NULL,
2766f4259b30SLisandro Dalcin                                        NULL,
276793dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2768f4259b30SLisandro Dalcin                                        NULL,
2769cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
277072e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2771f4259b30SLisandro Dalcin                                        NULL,
27727dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2773e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2774e03a110bSBarry Smith                                        MatView_MPIAIJ,
2775f4259b30SLisandro Dalcin                                        NULL,
2776f4259b30SLisandro Dalcin                                        NULL,
2777f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2778f996eeb8SHong Zhang                                        MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2779f4259b30SLisandro Dalcin                                        NULL,
2780f4259b30SLisandro Dalcin                                        NULL,
2781f4259b30SLisandro Dalcin                                        NULL,
2782d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIAIJ,
2783c87e5d42SMatthew Knepley                                        MatGetRowMinAbs_MPIAIJ,
2784f4259b30SLisandro Dalcin                                        NULL,
2785f4259b30SLisandro Dalcin                                        NULL,
2786f4259b30SLisandro Dalcin                                        NULL,
2787f4259b30SLisandro Dalcin                                        NULL,
27883acb8795SBarry Smith                                        /*75*/ MatFDColoringApply_AIJ,
2789b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2790f4259b30SLisandro Dalcin                                        NULL,
2791f4259b30SLisandro Dalcin                                        NULL,
2792f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
2793f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2794f4259b30SLisandro Dalcin                                        NULL,
2795f4259b30SLisandro Dalcin                                        NULL,
27965bba2384SShri Abhyankar                                        /*83*/ MatLoad_MPIAIJ,
27976cff0a6bSPierre Jolivet                                        NULL,
2798f4259b30SLisandro Dalcin                                        NULL,
2799f4259b30SLisandro Dalcin                                        NULL,
2800f4259b30SLisandro Dalcin                                        NULL,
2801f4259b30SLisandro Dalcin                                        NULL,
2802f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2803f4259b30SLisandro Dalcin                                        NULL,
280426be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
2805f4259b30SLisandro Dalcin                                        NULL,
2806f4259b30SLisandro Dalcin                                        NULL,
2807cf3ca8ceSHong Zhang                                        /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ,
2808f4259b30SLisandro Dalcin                                        NULL,
2809f4259b30SLisandro Dalcin                                        NULL,
2810f4259b30SLisandro Dalcin                                        NULL,
2811b470e4b4SRichard Tran Mills                                        MatBindToCPU_MPIAIJ,
28124222ddf1SHong Zhang                                        /*99*/ MatProductSetFromOptions_MPIAIJ,
2813f4259b30SLisandro Dalcin                                        NULL,
2814f4259b30SLisandro Dalcin                                        NULL,
28152fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
2816f4259b30SLisandro Dalcin                                        NULL,
2817d519adbfSMatthew Knepley                                        /*104*/ MatSetValuesRow_MPIAIJ,
281899cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
281969db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2820f4259b30SLisandro Dalcin                                        NULL,
2821f4259b30SLisandro Dalcin                                        NULL,
2822f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2823f4259b30SLisandro Dalcin                                        NULL,
28245494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2825f4259b30SLisandro Dalcin                                        NULL,
28263b49f96aSBarry Smith                                        MatMissingDiagonal_MPIAIJ,
2827d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIAIJ,
2828f4259b30SLisandro Dalcin                                        NULL,
2829c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2830f4259b30SLisandro Dalcin                                        NULL,
2831f4259b30SLisandro Dalcin                                        NULL,
2832b215bc84SStefano Zampini                                        /*119*/ MatMultDiagonalBlock_MPIAIJ,
2833f4259b30SLisandro Dalcin                                        NULL,
2834f4259b30SLisandro Dalcin                                        NULL,
2835f4259b30SLisandro Dalcin                                        NULL,
2836b9614d88SDmitry Karpeev                                        MatGetMultiProcBlock_MPIAIJ,
2837f2c98031SJed Brown                                        /*124*/ MatFindNonzeroRows_MPIAIJ,
2838a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2839bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2840a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
28417dae84e0SHong Zhang                                        MatCreateSubMatricesMPI_MPIAIJ,
2842f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2843f4259b30SLisandro Dalcin                                        NULL,
2844f4259b30SLisandro Dalcin                                        NULL,
2845187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2846f4259b30SLisandro Dalcin                                        NULL,
2847f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2848f4259b30SLisandro Dalcin                                        NULL,
2849f4259b30SLisandro Dalcin                                        NULL,
2850f4259b30SLisandro Dalcin                                        NULL,
2851f4259b30SLisandro Dalcin                                        NULL,
285246533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_MPIAIJ,
2853f4259b30SLisandro Dalcin                                        NULL,
2854f4259b30SLisandro Dalcin                                        NULL,
28559c8f2541SHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2856a0b6529bSBarry Smith                                        MatFindOffBlockDiagonalEntries_MPIAIJ,
28574222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2858f4259b30SLisandro Dalcin                                        /*145*/ NULL,
2859f4259b30SLisandro Dalcin                                        NULL,
286072833a62Smarkadams4                                        NULL,
286172833a62Smarkadams4                                        MatCreateGraph_Simple_AIJ,
28622d776b49SBarry Smith                                        NULL,
2863dec0b466SHong Zhang                                        /*150*/ NULL,
2864eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
2865*4cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIAIJ,
2866*4cc2b5b5SPierre Jolivet                                        NULL};
286736ce4990SBarry Smith 
2868ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2869d71ae5a4SJacob Faibussowitsch {
28702e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28712e8a6d31SBarry Smith 
28722e8a6d31SBarry Smith   PetscFunctionBegin;
28739566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28749566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28762e8a6d31SBarry Smith }
28772e8a6d31SBarry Smith 
2878ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2879d71ae5a4SJacob Faibussowitsch {
28802e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28812e8a6d31SBarry Smith 
28822e8a6d31SBarry Smith   PetscFunctionBegin;
28839566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28849566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28862e8a6d31SBarry Smith }
28878a729477SBarry Smith 
2888d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2889d71ae5a4SJacob Faibussowitsch {
2890ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
28915d2a9ed1SStefano Zampini   PetscMPIInt size;
2892a23d5eceSKris Buschelman 
2893a23d5eceSKris Buschelman   PetscFunctionBegin;
2894ad79cf63SBarry Smith   if (B->hash_active) {
2895aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2896ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2897ad79cf63SBarry Smith   }
28989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
28999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2900899cda47SBarry Smith 
2901cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2902eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2903cb7b82ddSBarry Smith #else
29049566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2905cb7b82ddSBarry Smith #endif
29069566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29079566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29089566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2909cb7b82ddSBarry Smith 
29109566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2911c508b908SBarry Smith 
2912c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
29139566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
29149566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29159566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29169566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29179566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2918c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2919cb7b82ddSBarry Smith 
2920c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2921ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29229566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29239566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29249566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29259566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2926c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2927899cda47SBarry Smith 
29289566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29299566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2930526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2931cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
293215001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2934a23d5eceSKris Buschelman }
2935a23d5eceSKris Buschelman 
2936ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2937d71ae5a4SJacob Faibussowitsch {
2938ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2939846b4da1SFande Kong 
2940846b4da1SFande Kong   PetscFunctionBegin;
2941846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29429566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29439566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2944846b4da1SFande Kong 
2945846b4da1SFande Kong #if defined(PETSC_USE_CTABLE)
2946eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2947846b4da1SFande Kong #else
29489566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2949846b4da1SFande Kong #endif
29509566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
29519566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
29529566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2953846b4da1SFande Kong 
29549566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->A));
29559566063dSJacob Faibussowitsch   PetscCall(MatResetPreallocation(b->B));
2956846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2957846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2958846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
29593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2960846b4da1SFande Kong }
2961846b4da1SFande Kong 
2962d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2963d71ae5a4SJacob Faibussowitsch {
2964d6dfbf8fSBarry Smith   Mat         mat;
2965416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2966d6dfbf8fSBarry Smith 
29673a40ed3dSBarry Smith   PetscFunctionBegin;
2968f4259b30SLisandro Dalcin   *newmat = NULL;
29699566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29709566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29719566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29729566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2973273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2974e1b6402fSHong Zhang 
2975d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2976501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2977e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2978d6dfbf8fSBarry Smith 
297917699dbbSLois Curfman McInnes   a->size         = oldmat->size;
298017699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2981e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2982e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2983501880eeSStefano Zampini   a->rowindices   = NULL;
2984501880eeSStefano Zampini   a->rowvalues    = NULL;
2985bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2986d6dfbf8fSBarry Smith 
29879566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29889566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2989420957c1SBarry Smith   if (matin->hash_active) {
2990420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2991420957c1SBarry Smith   } else {
2992420957c1SBarry Smith     mat->preallocated = matin->preallocated;
29932ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
2994aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2995eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2996b1fc9764SSatish Balay #else
29979566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
29989566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
2999b1fc9764SSatish Balay #endif
3000501880eeSStefano Zampini     } else a->colmap = NULL;
30013f41c07dSBarry Smith     if (oldmat->garray) {
3002b1d57f15SBarry Smith       PetscInt len;
3003d0f46423SBarry Smith       len = oldmat->B->cmap->n;
30049566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len + 1, &a->garray));
30059566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3006501880eeSStefano Zampini     } else a->garray = NULL;
3007d6dfbf8fSBarry Smith 
30080de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
30090de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
30100de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3011aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3012cff58d65SJunchao Zhang     if (oldmat->Mvctx) {
3013cff58d65SJunchao Zhang       a->Mvctx = oldmat->Mvctx;
3014cff58d65SJunchao Zhang       PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx));
3015cff58d65SJunchao Zhang     }
30169566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30179566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3018420957c1SBarry Smith   }
30199566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30208a729477SBarry Smith   *newmat = mat;
30213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30228a729477SBarry Smith }
3023416022c9SBarry Smith 
3024d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3025d71ae5a4SJacob Faibussowitsch {
302652f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
302752f91c60SVaclav Hapla 
302852f91c60SVaclav Hapla   PetscFunctionBegin;
302952f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
303052f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3031c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30329566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30339566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30349566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
303552f91c60SVaclav Hapla   if (isbinary) {
30369566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
303752f91c60SVaclav Hapla   } else if (ishdf5) {
303852f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30399566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
304052f91c60SVaclav Hapla #else
304152f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
304252f91c60SVaclav Hapla #endif
304352f91c60SVaclav Hapla   } else {
304498921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
304552f91c60SVaclav Hapla   }
30463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
304752f91c60SVaclav Hapla }
304852f91c60SVaclav Hapla 
3049d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3050d71ae5a4SJacob Faibussowitsch {
30513ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30523ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30533ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30548fb81238SShri Abhyankar 
30558fb81238SShri Abhyankar   PetscFunctionBegin;
30569566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30578fb81238SShri Abhyankar 
30583ea6fe3dSLisandro Dalcin   /* read in matrix header */
30599566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
306008401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30619371c9d4SSatish Balay   M  = header[1];
30629371c9d4SSatish Balay   N  = header[2];
30639371c9d4SSatish Balay   nz = header[3];
306408401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
306508401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
306608401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
306708ea439dSMark F. Adams 
30683ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30699566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30703ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30713ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30723ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30739566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30749566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30758fb81238SShri Abhyankar 
30763ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30779566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3078aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30798fb81238SShri Abhyankar 
30803ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30819566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30829566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30839566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30849371c9d4SSatish Balay   rowidxs[0] = 0;
30859371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
308638b83642SBarry Smith   if (nz != PETSC_MAX_INT) {
30871c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
308808401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
308938b83642SBarry Smith   }
309038b83642SBarry Smith 
30913ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
30929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
30939566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
30949566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
30953ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
30969566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
30979566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
30989566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
30993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31008fb81238SShri Abhyankar }
31018fb81238SShri Abhyankar 
31023782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3103ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3104d71ae5a4SJacob Faibussowitsch {
31054aa3045dSJed Brown   IS          iscol_local;
3106c5e4d11fSDmitry Karpeev   PetscBool   isstride;
3107c5e4d11fSDmitry Karpeev   PetscMPIInt lisstride = 0, gisstride;
31083782ecc7SHong Zhang 
31093782ecc7SHong Zhang   PetscFunctionBegin;
31103782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31119566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31123782ecc7SHong Zhang 
3113c5e4d11fSDmitry Karpeev   if (isstride) {
3114c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31159566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31169566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31179566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
3118c5e4d11fSDmitry Karpeev     if (mstart == start && mlen - mstart == len) lisstride = 1;
3119c5e4d11fSDmitry Karpeev   }
31203782ecc7SHong Zhang 
31211c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&lisstride, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3122c5e4d11fSDmitry Karpeev   if (gisstride) {
3123c5e4d11fSDmitry Karpeev     PetscInt N;
31249566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31259566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31269566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31279566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3128c5e4d11fSDmitry Karpeev   } else {
3129c5bfad50SMark F. Adams     PetscInt cbs;
31309566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31319566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31329566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3133b79d0421SJed Brown   }
31343782ecc7SHong Zhang 
31353782ecc7SHong Zhang   *isseq = iscol_local;
31363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3137c5e4d11fSDmitry Karpeev }
31388d2139bdSHong Zhang 
3139ddfdf956SHong Zhang /*
31409c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31419c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3142ddfdf956SHong Zhang 
3143ddfdf956SHong Zhang  Input Parameters:
314427430b45SBarry Smith +   mat - matrix
314527430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31469c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
314727430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3148ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
314927430b45SBarry Smith 
315027430b45SBarry Smith  Output Parameters:
315127430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
315227430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
315327430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
315427430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3155ddfdf956SHong Zhang  */
3156ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, const PetscInt *garray[])
3157d71ae5a4SJacob Faibussowitsch {
3158040216a4SHong Zhang   Vec             x, cmap;
3159040216a4SHong Zhang   const PetscInt *is_idx;
3160040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31619c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3162040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3163040216a4SHong Zhang   Mat             B    = a->B;
3164040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3165a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31668b3fa1f7SHong Zhang   MPI_Comm        comm;
31673a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31683782ecc7SHong Zhang 
31693782ecc7SHong Zhang   PetscFunctionBegin;
31709566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31719566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31728b3fa1f7SHong Zhang 
3173ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31749566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31759566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31769566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31779566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31780a351717SHong Zhang 
31799c988bcaSHong Zhang   /* Get start indices */
31809566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3181ddfdf956SHong Zhang   isstart -= ncols;
31829566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3183040216a4SHong Zhang 
31849566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31859566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31869566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3188ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31898b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3190ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31919c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
31928b3fa1f7SHong Zhang   }
31939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
31949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
31959566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
31968b3fa1f7SHong Zhang 
31979c988bcaSHong Zhang   /* Get iscol_d */
31989566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
31999566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
32009566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3201feb78a15SHong Zhang 
32029c988bcaSHong Zhang   /* Get isrow_d */
32039566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3204feb78a15SHong Zhang   rstart = mat->rmap->rstart;
32059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
32069566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
32079c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
32089566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3209feb78a15SHong Zhang 
32109566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32119566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32129566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3213feb78a15SHong Zhang 
32149c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32159566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32169566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3217ddfdf956SHong Zhang 
32189566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
321907250d77SHong Zhang 
32209566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32219566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
322264efcef9SHong Zhang 
32239c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3224ddfdf956SHong Zhang   /* off-process column indices */
32259c988bcaSHong Zhang   count = 0;
32269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3228feb78a15SHong Zhang 
32299566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32309566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32318b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3232f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32339c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32341c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32351c645242SHong Zhang       count++;
32368b3fa1f7SHong Zhang     }
32378b3fa1f7SHong Zhang   }
32389566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32399566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
324007250d77SHong Zhang 
32419566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3242b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3243b6d9b4e0SHong Zhang 
32449566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32459c988bcaSHong Zhang   *garray = cmap1;
32469c988bcaSHong Zhang 
32479566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32489566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32499566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3251040216a4SHong Zhang }
3252040216a4SHong Zhang 
3253b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3254d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3255d71ae5a4SJacob Faibussowitsch {
3256b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32571fd43edeSHong Zhang   Mat         M = NULL;
32583b00a383SHong Zhang   MPI_Comm    comm;
3259b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32603b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3261b20e2604SHong Zhang   PetscInt    n;
32623b00a383SHong Zhang 
32633b00a383SHong Zhang   PetscFunctionBegin;
32649566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32653b00a383SHong Zhang 
32663b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3267b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32689566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
326928b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32703b00a383SHong Zhang 
32719566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
327228b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32733b00a383SHong Zhang 
32749566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
327528b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32763b00a383SHong Zhang 
3277b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3278b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32799566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32809566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
328148a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32829566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32839566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32843b00a383SHong Zhang 
32853b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
32869c988bcaSHong Zhang     const PetscInt *garray;
3287b20e2604SHong Zhang     PetscInt        BsubN;
32883b00a383SHong Zhang 
3289b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32909566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32913b00a383SHong Zhang 
3292b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
32939566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
32949566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
32953b00a383SHong Zhang 
32969c988bcaSHong Zhang     /* Create submatrix M */
32979566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, Asub, Bsub, garray, &M));
32983b00a383SHong Zhang 
3299b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3300b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
33017cfce09cSHong Zhang 
33029566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3303b20e2604SHong Zhang     n = asub->B->cmap->N;
3304b20e2604SHong Zhang     if (BsubN > n) {
3305c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33067cfce09cSHong Zhang       const PetscInt *idx;
33079c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33089566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33097cfce09cSHong Zhang 
33109566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33117cfce09cSHong Zhang       j = 0;
33129566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3313b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33147cfce09cSHong Zhang         if (j >= BsubN) break;
33159c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33167cfce09cSHong Zhang 
33179c988bcaSHong Zhang         if (subgarray[i] == garray[j]) {
33187cfce09cSHong Zhang           idx_new[i] = idx[j++];
331998921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33207cfce09cSHong Zhang       }
33219566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33227cfce09cSHong Zhang 
33239566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33249566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33257cfce09cSHong Zhang 
3326b20e2604SHong Zhang     } else if (BsubN < n) {
332798921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
3328b20e2604SHong Zhang     }
33297cfce09cSHong Zhang 
33309566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3331b20e2604SHong Zhang     *submat = M;
33323b00a383SHong Zhang 
3333e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33349566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33359566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33363b00a383SHong Zhang 
33379566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33389566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33393b00a383SHong Zhang 
33409566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33419566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33423b00a383SHong Zhang   }
33433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33443b00a383SHong Zhang }
33453b00a383SHong Zhang 
3346d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3347d71ae5a4SJacob Faibussowitsch {
33481358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33493782ecc7SHong Zhang   PetscInt  csize;
335018e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33514a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33523782ecc7SHong Zhang   MPI_Comm  comm;
33533782ecc7SHong Zhang 
33543782ecc7SHong Zhang   PetscFunctionBegin;
3355bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3356a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33578f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33589566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3359d5761cdaSHong Zhang     if (isrow_d) {
3360d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3361d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3362d5761cdaSHong Zhang     } else {
33639566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3364d5761cdaSHong Zhang       if (iscol_local) {
3365d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3366d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3367d5761cdaSHong Zhang       }
3368d5761cdaSHong Zhang     }
33698f69fa7bSHong Zhang   } else {
3370e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
337118e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33729566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33733782ecc7SHong Zhang     if (!n) {
337418e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33753782ecc7SHong Zhang     } else {
33769566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33779566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3378ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33798f69fa7bSHong Zhang     }
33803782ecc7SHong Zhang 
3381e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
338218e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33839566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
338418e627e3SHong Zhang     if (!n) {
338518e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
338618e627e3SHong Zhang     } else {
33879566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
33889566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
338918e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
339018e627e3SHong Zhang     }
339118e627e3SHong Zhang 
33929566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
33931c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm));
339418e627e3SHong Zhang     sameRowDist = tsameDist[0];
339518e627e3SHong Zhang   }
339618e627e3SHong Zhang 
339718e627e3SHong Zhang   if (sameRowDist) {
3398b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
33993b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
34009566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
34013ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3402b20e2604SHong Zhang     } else { /* sameRowDist */
34033b00a383SHong Zhang       /* isrow has same processor distribution as mat */
34041358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
34051358a193SHong Zhang         PetscBool sorted;
34069566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34079566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34089566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
340908401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34101358a193SHong Zhang 
34119566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34121358a193SHong Zhang         if (sorted) {
34131358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34149566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34153ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34163782ecc7SHong Zhang         }
34171358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
341848c0d076SHong Zhang         IS iscol_sub;
34199566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
342048c0d076SHong Zhang         if (iscol_sub) {
34219566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34223ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
342348c0d076SHong Zhang         }
34241358a193SHong Zhang       }
34251358a193SHong Zhang     }
34261358a193SHong Zhang   }
34273782ecc7SHong Zhang 
3428bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34293782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34309566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
343128b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34323782ecc7SHong Zhang   } else {
343348a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34341358a193SHong Zhang   }
34353782ecc7SHong Zhang 
34369566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34379566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34388f69fa7bSHong Zhang 
3439b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34409566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34419566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3442b79d0421SJed Brown   }
34433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34444aa3045dSJed Brown }
34454aa3045dSJed Brown 
3446feb78a15SHong Zhang /*@C
344711a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3448feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3449feb78a15SHong Zhang 
3450d083f849SBarry Smith   Collective
3451feb78a15SHong Zhang 
3452feb78a15SHong Zhang   Input Parameters:
3453feb78a15SHong Zhang + comm   - MPI communicator
3454feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3455b20e2604SHong Zhang . B      - "off-diagonal" portion of matrix, may have empty columns, will be destroyed by this routine
34562ef1f0ffSBarry Smith - garray - global index of `B` columns
3457feb78a15SHong Zhang 
3458feb78a15SHong Zhang   Output Parameter:
34592ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
346027430b45SBarry Smith 
3461feb78a15SHong Zhang   Level: advanced
3462feb78a15SHong Zhang 
3463feb78a15SHong Zhang   Notes:
346411a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
346511a5261eSBarry Smith 
34662ef1f0ffSBarry Smith   `A` becomes part of output mat, `B` is destroyed by this routine. The user cannot use `A` and `B` anymore.
3467feb78a15SHong Zhang 
34681cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3469feb78a15SHong Zhang @*/
3470d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, Mat A, Mat B, const PetscInt garray[], Mat *mat)
3471d71ae5a4SJacob Faibussowitsch {
3472feb78a15SHong Zhang   Mat_MPIAIJ        *maij;
3473e489de8fSHong Zhang   Mat_SeqAIJ        *b  = (Mat_SeqAIJ *)B->data, *bnew;
3474a5348796SHong Zhang   PetscInt          *oi = b->i, *oj = b->j, i, nz, col;
3475ce496241SStefano Zampini   const PetscScalar *oa;
3476e489de8fSHong Zhang   Mat                Bnew;
3477feb78a15SHong Zhang   PetscInt           m, n, N;
34784ab4d6f4SRichard Tran Mills   MatType            mpi_mat_type;
3479feb78a15SHong Zhang 
3480feb78a15SHong Zhang   PetscFunctionBegin;
34819566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
34829566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
348308401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
348437a5e0faSPierre Jolivet   PetscCheck(PetscAbs(A->rmap->bs) == PetscAbs(B->rmap->bs), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3485b6d9b4e0SHong Zhang   /* remove check below; When B is created using iscol_o from ISGetSeqIS_SameColDist_Private(), its bs may not be same as A */
348608401ef6SPierre Jolivet   /* PetscCheck(A->cmap->bs == B->cmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"A column bs %" PetscInt_FMT " != B column bs %" PetscInt_FMT,A->cmap->bs,B->cmap->bs); */
3487feb78a15SHong Zhang 
3488e489de8fSHong Zhang   /* Get global columns of mat */
34891c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&n, &N, 1, MPIU_INT, MPI_SUM, comm));
3490feb78a15SHong Zhang 
34919566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, PETSC_DECIDE, N));
34924ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
34934ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
34944ab4d6f4SRichard Tran Mills   PetscCall(MatSetType(*mat, mpi_mat_type));
34954ab4d6f4SRichard Tran Mills 
349637a5e0faSPierre Jolivet   if (A->rmap->bs > 1 || A->cmap->bs > 1) PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs));
3497feb78a15SHong Zhang   maij = (Mat_MPIAIJ *)(*mat)->data;
3498feb78a15SHong Zhang 
3499feb78a15SHong Zhang   (*mat)->preallocated = PETSC_TRUE;
3500feb78a15SHong Zhang 
35019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
35029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
3503feb78a15SHong Zhang 
3504e489de8fSHong Zhang   /* Set A as diagonal portion of *mat */
3505feb78a15SHong Zhang   maij->A = A;
3506feb78a15SHong Zhang 
3507a5348796SHong Zhang   nz = oi[m];
3508a5348796SHong Zhang   for (i = 0; i < nz; i++) {
3509a5348796SHong Zhang     col   = oj[i];
3510a5348796SHong Zhang     oj[i] = garray[col];
3511feb78a15SHong Zhang   }
3512feb78a15SHong Zhang 
3513e489de8fSHong Zhang   /* Set Bnew as off-diagonal portion of *mat */
35149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &oa));
35159566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, N, oi, oj, (PetscScalar *)oa, &Bnew));
35169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &oa));
3517e489de8fSHong Zhang   bnew        = (Mat_SeqAIJ *)Bnew->data;
3518e489de8fSHong Zhang   bnew->maxnz = b->maxnz; /* allocated nonzeros of B */
3519e489de8fSHong Zhang   maij->B     = Bnew;
3520d5761cdaSHong Zhang 
352108401ef6SPierre Jolivet   PetscCheck(B->rmap->N == Bnew->rmap->N, PETSC_COMM_SELF, PETSC_ERR_PLIB, "BN %" PetscInt_FMT " != BnewN %" PetscInt_FMT, B->rmap->N, Bnew->rmap->N);
3522d5761cdaSHong Zhang 
3523e489de8fSHong Zhang   b->singlemalloc = PETSC_FALSE; /* B arrays are shared by Bnew */
3524d5761cdaSHong Zhang   b->free_a       = PETSC_FALSE;
3525d5761cdaSHong Zhang   b->free_ij      = PETSC_FALSE;
35269566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&B));
3527d5761cdaSHong Zhang 
3528e489de8fSHong Zhang   bnew->singlemalloc = PETSC_TRUE; /* arrays will be freed by MatDestroy(&Bnew) */
3529e489de8fSHong Zhang   bnew->free_a       = PETSC_TRUE;
3530e489de8fSHong Zhang   bnew->free_ij      = PETSC_TRUE;
3531feb78a15SHong Zhang 
3532a5348796SHong Zhang   /* condense columns of maij->B */
35339566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
35349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
35359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
35369566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
35379566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
35383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3539feb78a15SHong Zhang }
3540feb78a15SHong Zhang 
3541ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35424aa3045dSJed Brown 
3543d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3544d71ae5a4SJacob Faibussowitsch {
354598b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
354685f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
354798b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35481fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
354998b658c4SHong Zhang   MatScalar      *aa;
355000e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3551a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
355298b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
355398b658c4SHong Zhang   IS              iscol_sub, iscmap;
355498b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
355518e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3556a31a438cSHong Zhang   MPI_Comm        comm;
35577e2c5f70SBarry Smith 
3558a0ff6018SBarry Smith   PetscFunctionBegin;
35599566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3560d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35619566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
356228b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35639566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3564d5761cdaSHong Zhang 
35659566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
356628b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3567d5761cdaSHong Zhang 
35689566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
356928b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3570d5761cdaSHong Zhang 
35719566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3572d5761cdaSHong Zhang 
3573d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35743b00a383SHong Zhang     PetscBool flg;
35753b00a383SHong Zhang 
35769566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35779566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3578bcae8d28SHong Zhang 
35793b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3580366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35819566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3582366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
35831c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3584366a327dSHong Zhang     if (allcolumns) {
3585366a327dSHong Zhang       iscol_sub = iscol_local;
35869566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35879566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3588366a327dSHong Zhang 
35893b00a383SHong Zhang     } else {
35901358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3591244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35929566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35939566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
35949566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
35958d2139bdSHong Zhang       count = 0;
3596a31a438cSHong Zhang       k     = 0;
3597a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3598a31a438cSHong Zhang         j = is_idx[i];
3599a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3600a31a438cSHong Zhang           /* diagonal part of mat */
36018d2139bdSHong Zhang           idx[count]     = j;
3602366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
36034a3daf6eSHong Zhang         } else if (Bn) {
3604a31a438cSHong Zhang           /* off-diagonal part of mat */
3605a31a438cSHong Zhang           if (j == garray[k]) {
36068d2139bdSHong Zhang             idx[count]     = j;
3607a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3608a31a438cSHong Zhang           } else if (j > garray[k]) {
3609a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3610a31a438cSHong Zhang             if (j == garray[k]) {
3611a31a438cSHong Zhang               idx[count]     = j;
3612a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
36138d2139bdSHong Zhang             }
36148d2139bdSHong Zhang           }
36158d2139bdSHong Zhang         }
36168d2139bdSHong Zhang       }
36179566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
36188d2139bdSHong Zhang 
36199566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
36209566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36219566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3622b6d9b4e0SHong Zhang 
36239566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3624a31a438cSHong Zhang     }
36258b3fa1f7SHong Zhang 
36263b00a383SHong Zhang     /* (3) Create sequential Msub */
36279566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3628d5761cdaSHong Zhang   }
36298d2139bdSHong Zhang 
36309566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
363198b658c4SHong Zhang   aij = (Mat_SeqAIJ *)(Msub)->data;
363298b658c4SHong Zhang   ii  = aij->i;
36339566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3634a0ff6018SBarry Smith 
3635a0ff6018SBarry Smith   /*
3636a0ff6018SBarry Smith       m - number of local rows
3637a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3638a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3639a0ff6018SBarry Smith   */
36409566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
364198b658c4SHong Zhang 
36423b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36433b00a383SHong Zhang     /* (4) Create parallel newmat */
364498b658c4SHong Zhang     PetscMPIInt rank, size;
3645bcae8d28SHong Zhang     PetscInt    csize;
364698b658c4SHong Zhang 
36479566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36489566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
364900e6dbe6SBarry Smith 
3650a0ff6018SBarry Smith     /*
365100e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
365200e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3653a0ff6018SBarry Smith     */
365400e6dbe6SBarry Smith 
365500e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36569566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36576a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36589566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3659a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3660e2c4fddaSBarry Smith         nlocal = m;
36616a6a5d1dSBarry Smith       } else {
3662a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3663ab50ec6bSBarry Smith       }
3664ab50ec6bSBarry Smith     } else {
36656a6a5d1dSBarry Smith       nlocal = csize;
36666a6a5d1dSBarry Smith     }
36679566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
366800e6dbe6SBarry Smith     rstart = rend - nlocal;
3669aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
367000e6dbe6SBarry Smith 
367100e6dbe6SBarry Smith     /* next, compute all the lengths */
367298b658c4SHong Zhang     jj = aij->j;
36739566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
367400e6dbe6SBarry Smith     olens = dlens + m;
367500e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
367600e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
367700e6dbe6SBarry Smith       olen = 0;
367800e6dbe6SBarry Smith       dlen = 0;
367900e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
368015b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
368100e6dbe6SBarry Smith         else dlen++;
368200e6dbe6SBarry Smith         jj++;
368300e6dbe6SBarry Smith       }
368400e6dbe6SBarry Smith       olens[i] = olen;
368500e6dbe6SBarry Smith       dlens[i] = dlen;
368600e6dbe6SBarry Smith     }
3687b6d9b4e0SHong Zhang 
36889566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36899566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
369098b658c4SHong Zhang 
36919566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36929566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36939566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
36949566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
36959566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
36969566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3697d5761cdaSHong Zhang 
3698d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3699a0ff6018SBarry Smith     M = *newmat;
37009566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
370108401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
37029566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3703c48de900SBarry Smith     /*
3704c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3705c48de900SBarry Smith        rather than the slower MatSetValues().
3706c48de900SBarry Smith     */
3707c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3708c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3709a0ff6018SBarry Smith   }
3710548ecf4dSHong Zhang 
37113b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
37129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
37139566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
371498b658c4SHong Zhang 
371598b658c4SHong Zhang   jj = aij->j;
37169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3717a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3718a0ff6018SBarry Smith     row = rstart + i;
371900e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
372015b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37219566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37229371c9d4SSatish Balay     jj += nz;
37239371c9d4SSatish Balay     aa += nz;
3724a0ff6018SBarry Smith   }
37259566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37269566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3727a0ff6018SBarry Smith 
37289566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3730fee21e36SBarry Smith 
37319566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
373298b658c4SHong Zhang 
373398b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3734fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37353b00a383SHong Zhang     *newmat = M;
3736f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37379566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
373898b658c4SHong Zhang 
3739f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37409566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
374198b658c4SHong Zhang 
3742f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37439566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3744bcae8d28SHong Zhang 
3745bcae8d28SHong Zhang     if (iscol_local) {
3746f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37479566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3748bcae8d28SHong Zhang     }
374998b658c4SHong Zhang   }
37503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3751a0ff6018SBarry Smith }
3752273d9f13SBarry Smith 
3753df40acb1SHong Zhang /*
3754df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3755df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3756df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3757df40acb1SHong Zhang 
375811a5261eSBarry Smith   This requires a sequential iscol with all indices.
3759df40acb1SHong Zhang */
3760d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3761d71ae5a4SJacob Faibussowitsch {
3762df40acb1SHong Zhang   PetscMPIInt rank, size;
3763df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3764df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3765df40acb1SHong Zhang   Mat         M, Mreuse;
376698b658c4SHong Zhang   MatScalar  *aa, *vwork;
3767df40acb1SHong Zhang   MPI_Comm    comm;
3768df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37690b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3770df40acb1SHong Zhang 
3771df40acb1SHong Zhang   PetscFunctionBegin;
37729566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37739566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37749566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3775df40acb1SHong Zhang 
37760b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37779566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37789566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37790b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
37801c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37810b27a90eSHong Zhang 
3782df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37839566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
378428b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37859566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3786df40acb1SHong Zhang   } else {
37879566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3788df40acb1SHong Zhang   }
3789df40acb1SHong Zhang 
3790df40acb1SHong Zhang   /*
3791df40acb1SHong Zhang       m - number of local rows
3792df40acb1SHong Zhang       n - number of columns (same on all processors)
3793df40acb1SHong Zhang       rstart - first row in new global matrix generated
3794df40acb1SHong Zhang   */
37959566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
37969566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3797df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
3798df40acb1SHong Zhang     aij = (Mat_SeqAIJ *)(Mreuse)->data;
3799df40acb1SHong Zhang     ii  = aij->i;
3800df40acb1SHong Zhang     jj  = aij->j;
3801df40acb1SHong Zhang 
3802df40acb1SHong Zhang     /*
3803df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3804df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3805df40acb1SHong Zhang     */
3806df40acb1SHong Zhang 
3807df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3808df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
38099566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3810df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3811df40acb1SHong Zhang         nlocal = m;
3812df40acb1SHong Zhang       } else {
3813df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3814df40acb1SHong Zhang       }
3815df40acb1SHong Zhang     } else {
3816df40acb1SHong Zhang       nlocal = csize;
3817df40acb1SHong Zhang     }
38189566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3819df40acb1SHong Zhang     rstart = rend - nlocal;
3820aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3821df40acb1SHong Zhang 
3822df40acb1SHong Zhang     /* next, compute all the lengths */
38239566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3824df40acb1SHong Zhang     olens = dlens + m;
3825df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3826df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3827df40acb1SHong Zhang       olen = 0;
3828df40acb1SHong Zhang       dlen = 0;
3829df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3830df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3831df40acb1SHong Zhang         else dlen++;
3832df40acb1SHong Zhang         jj++;
3833df40acb1SHong Zhang       }
3834df40acb1SHong Zhang       olens[i] = olen;
3835df40acb1SHong Zhang       dlens[i] = dlen;
3836df40acb1SHong Zhang     }
38379566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38389566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38399566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38409566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38419566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38429566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3843df40acb1SHong Zhang   } else {
3844df40acb1SHong Zhang     PetscInt ml, nl;
3845df40acb1SHong Zhang 
3846df40acb1SHong Zhang     M = *newmat;
38479566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
384808401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38499566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3850df40acb1SHong Zhang     /*
3851df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3852df40acb1SHong Zhang        rather than the slower MatSetValues().
3853df40acb1SHong Zhang     */
3854df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3855df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3856df40acb1SHong Zhang   }
38579566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
3858df40acb1SHong Zhang   aij = (Mat_SeqAIJ *)(Mreuse)->data;
3859df40acb1SHong Zhang   ii  = aij->i;
3860df40acb1SHong Zhang   jj  = aij->j;
38612e5835c6SStefano Zampini 
38622e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38639566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3864df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3865df40acb1SHong Zhang     row   = rstart + i;
3866df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38679371c9d4SSatish Balay     cwork = jj;
38688e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38699371c9d4SSatish Balay     vwork = aa;
38708e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38719566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3872df40acb1SHong Zhang   }
38739566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3874df40acb1SHong Zhang 
38759566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38769566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3877df40acb1SHong Zhang   *newmat = M;
3878df40acb1SHong Zhang 
3879df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3880df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38819566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38829566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3883df40acb1SHong Zhang   }
38843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3885df40acb1SHong Zhang }
3886df40acb1SHong Zhang 
3887ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3888d71ae5a4SJacob Faibussowitsch {
38896a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
3890899cda47SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii;
3891ccd8e176SBarry Smith   const PetscInt *JJ;
3892eeb24464SBarry Smith   PetscBool       nooffprocentries;
38936a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3894ccd8e176SBarry Smith 
3895ccd8e176SBarry Smith   PetscFunctionBegin;
3896aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Ii[0] must be 0 it is %" PetscInt_FMT, Ii[0]);
3897899cda47SBarry Smith 
38989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
38999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3900d0f46423SBarry Smith   m      = B->rmap->n;
3901d0f46423SBarry Smith   cstart = B->cmap->rstart;
3902d0f46423SBarry Smith   cend   = B->cmap->rend;
3903d0f46423SBarry Smith   rstart = B->rmap->rstart;
3904899cda47SBarry Smith 
39059566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3906ccd8e176SBarry Smith 
390776bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
39088f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3909ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
39108e3a54c0SPierre Jolivet       JJ  = PetscSafePointerPlusOffset(J, Ii[i]);
391108401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
391208401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
391308401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3914ecc77c7aSBarry Smith     }
391576bd3646SJed Brown   }
3916ecc77c7aSBarry Smith 
39178f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3918b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
39198e3a54c0SPierre Jolivet     JJ      = PetscSafePointerPlusOffset(J, Ii[i]);
3920ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3921ccd8e176SBarry Smith     d       = 0;
39220daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39230daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3924ccd8e176SBarry Smith     }
3925ccd8e176SBarry Smith     d_nnz[i] = d;
3926ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3927ccd8e176SBarry Smith   }
39289566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39299566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3930ccd8e176SBarry Smith 
39318f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3932ccd8e176SBarry Smith     ii = i + rstart;
39338e3a54c0SPierre Jolivet     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i]), PetscSafePointerPlusOffset(v, Ii[i]), INSERT_VALUES));
3934ccd8e176SBarry Smith   }
3935eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3936eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39379566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39389566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3939eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3940ccd8e176SBarry Smith 
39416a3d2595SBarry Smith   /* count number of entries below block diagonal */
39426a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39436a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39446a3d2595SBarry Smith   Aij->ld = ld;
39456a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39466a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39476a3d2595SBarry Smith     j   = 0;
3948ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39496a3d2595SBarry Smith     ld[i] = j;
3950720a2405SPierre Jolivet     if (J) J += nnz;
39516a3d2595SBarry Smith   }
39526a3d2595SBarry Smith 
39539566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3955ccd8e176SBarry Smith }
3956ccd8e176SBarry Smith 
39571eea217eSSatish Balay /*@
395811a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3959ccd8e176SBarry Smith   (the default parallel PETSc format).
3960ccd8e176SBarry Smith 
3961d083f849SBarry Smith   Collective
3962ccd8e176SBarry Smith 
3963ccd8e176SBarry Smith   Input Parameters:
3964a1661176SMatthew Knepley + B - the matrix
3965d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3966d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3967ccd8e176SBarry Smith - v - optional values in the matrix
3968ccd8e176SBarry Smith 
3969ccd8e176SBarry Smith   Level: developer
3970ccd8e176SBarry Smith 
397112251496SSatish Balay   Notes:
39722ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39732ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
397411a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
397512251496SSatish Balay 
39762ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
397712251496SSatish Balay 
3978a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3979a4bd8bc0SBarry Smith 
3980a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3981a4bd8bc0SBarry Smith 
3982a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3983a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3984a4bd8bc0SBarry Smith 
398512251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
398612251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3987c5e4d11fSDmitry Karpeev   as shown
398827430b45SBarry Smith .vb
398927430b45SBarry Smith         1 0 0
399027430b45SBarry Smith         2 0 3     P0
399127430b45SBarry Smith        -------
399227430b45SBarry Smith         4 5 6     P1
399327430b45SBarry Smith 
399427430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
399527430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
399627430b45SBarry Smith         j =  {0,0,2}  [size = 3]
399727430b45SBarry Smith         v =  {1,2,3}  [size = 3]
399827430b45SBarry Smith 
399927430b45SBarry Smith      Process1 [P1] rows_owned=[2]
400027430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
400127430b45SBarry Smith         j =  {0,1,2}  [size = 3]
400227430b45SBarry Smith         v =  {4,5,6}  [size = 3]
400327430b45SBarry Smith .ve
400412251496SSatish Balay 
4005fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
4006a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4007ccd8e176SBarry Smith @*/
4008d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
4009d71ae5a4SJacob Faibussowitsch {
4010ccd8e176SBarry Smith   PetscFunctionBegin;
4011cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
40123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4013ccd8e176SBarry Smith }
4014ccd8e176SBarry Smith 
40155d83a8b1SBarry Smith /*@
401611a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
4017273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4018273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
401920f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4020273d9f13SBarry Smith 
4021d083f849SBarry Smith   Collective
4022273d9f13SBarry Smith 
4023273d9f13SBarry Smith   Input Parameters:
40241c4f3114SJed Brown + B     - the matrix
4025273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4026273d9f13SBarry Smith            (same value is used for all local rows)
4027273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4028273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40292ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4030273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40313287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40323287b5eaSJed Brown            the diagonal entry even if it is zero.
4033273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4034273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4035273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4036273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40372ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4038273d9f13SBarry Smith            structure. The size of this array is equal to the number
4039273d9f13SBarry Smith            of local rows, i.e 'm'.
4040273d9f13SBarry Smith 
40412920cce0SJacob Faibussowitsch   Example Usage:
404227430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
404327430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
404427430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
404527430b45SBarry Smith   as follows
404627430b45SBarry Smith 
404727430b45SBarry Smith .vb
404827430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
404927430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
405027430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
405127430b45SBarry Smith     -------------------------------------
405227430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
405327430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
405427430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
405527430b45SBarry Smith     -------------------------------------
405627430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
405727430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
405827430b45SBarry Smith .ve
405927430b45SBarry Smith 
406027430b45SBarry Smith   This can be represented as a collection of submatrices as
406127430b45SBarry Smith .vb
406227430b45SBarry Smith       A B C
406327430b45SBarry Smith       D E F
406427430b45SBarry Smith       G H I
406527430b45SBarry Smith .ve
406627430b45SBarry Smith 
406727430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
406827430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
406927430b45SBarry Smith 
407027430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407127430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
407227430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
407327430b45SBarry Smith 
407427430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
407527430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
407627430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
407727430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
407827430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
407927430b45SBarry Smith   matrix, ans [DF] as another `MATSEQAIJ` matrix.
408027430b45SBarry Smith 
408120f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
408220f4b53cSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
408327430b45SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
408420f4b53cSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
408527430b45SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
408620f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
408727430b45SBarry Smith .vb
408827430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
408927430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
409027430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
409127430b45SBarry Smith .ve
409220f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
409327430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
409427430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
409527430b45SBarry Smith   34 values.
409627430b45SBarry Smith 
409720f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
409827430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
409920f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
410027430b45SBarry Smith .vb
410127430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
410227430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
410327430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
410427430b45SBarry Smith .ve
410527430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
410627430b45SBarry Smith   hence pre-allocation is perfect.
410727430b45SBarry Smith 
410827430b45SBarry Smith   Level: intermediate
410927430b45SBarry Smith 
411027430b45SBarry Smith   Notes:
411149a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
411249a6f317SBarry Smith 
411327430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
41140598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4115651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4116273d9f13SBarry Smith 
4117273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4118273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4119273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4120273d9f13SBarry Smith 
4121273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4122a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4123a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4124a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4125a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4126a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4127a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4128a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4129a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4130273d9f13SBarry Smith 
41312ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4132273d9f13SBarry Smith 
413327430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4134aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
413527430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4136aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4137aa95bbe8SBarry Smith 
41381cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4139a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4140273d9f13SBarry Smith @*/
4141d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4142d71ae5a4SJacob Faibussowitsch {
4143273d9f13SBarry Smith   PetscFunctionBegin;
41446ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41456ba663aaSJed Brown   PetscValidType(B, 1);
4146cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4148273d9f13SBarry Smith }
4149273d9f13SBarry Smith 
415058d36128SBarry Smith /*@
415111a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41528f8f2f0dSBarry Smith   CSR format for the local rows.
41532fb0ec9aSBarry Smith 
4154d083f849SBarry Smith   Collective
41552fb0ec9aSBarry Smith 
41562fb0ec9aSBarry Smith   Input Parameters:
41572fb0ec9aSBarry Smith + comm - MPI communicator
415811a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41592fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4160d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4161d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4162d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4163d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41645693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41655693b835SJunchao Zhang . j    - global column indices
4166f1f2ae84SBarry Smith - a    - optional matrix values
41672fb0ec9aSBarry Smith 
41682fb0ec9aSBarry Smith   Output Parameter:
41692fb0ec9aSBarry Smith . mat - the matrix
417003bfb495SBarry Smith 
41712fb0ec9aSBarry Smith   Level: intermediate
41722fb0ec9aSBarry Smith 
41732fb0ec9aSBarry Smith   Notes:
41742ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4175d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4176d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41772fb0ec9aSBarry Smith 
41782ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
417912251496SSatish Balay 
41805693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4181a4bd8bc0SBarry Smith 
41825693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4183a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4184a4bd8bc0SBarry Smith 
418512251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4186d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4187c5e4d11fSDmitry Karpeev   as shown
41882ef1f0ffSBarry Smith .vb
41892ef1f0ffSBarry Smith         1 0 0
41902ef1f0ffSBarry Smith         2 0 3     P0
41912ef1f0ffSBarry Smith        -------
41922ef1f0ffSBarry Smith         4 5 6     P1
41938f8f2f0dSBarry Smith 
41942ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
41952ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
41962ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
41972ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
41982fb0ec9aSBarry Smith 
41992ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
42002ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
42012ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
42022ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
42032ef1f0ffSBarry Smith .ve
42042ef1f0ffSBarry Smith 
4205d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
42065693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42072fb0ec9aSBarry Smith @*/
4208d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4209d71ae5a4SJacob Faibussowitsch {
42102fb0ec9aSBarry Smith   PetscFunctionBegin;
421108401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
421208401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
42139566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
42149566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
42159566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
42169566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
42179566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
42183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42192fb0ec9aSBarry Smith }
42202fb0ec9aSBarry Smith 
42218f8f2f0dSBarry Smith /*@
422211a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42232ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42242ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42256a3d2595SBarry Smith 
42266a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42278f8f2f0dSBarry Smith 
42288f8f2f0dSBarry Smith   Collective
42298f8f2f0dSBarry Smith 
42308f8f2f0dSBarry Smith   Input Parameters:
42318f8f2f0dSBarry Smith + mat - the matrix
423211a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42338f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
423411a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42358f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
423611a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
423711a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42388f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42398f8f2f0dSBarry Smith . J   - column indices
42408f8f2f0dSBarry Smith - v   - matrix values
42418f8f2f0dSBarry Smith 
42422ef1f0ffSBarry Smith   Level: deprecated
42438f8f2f0dSBarry Smith 
42441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4245a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42468f8f2f0dSBarry Smith @*/
4247d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4248d71ae5a4SJacob Faibussowitsch {
42496a3d2595SBarry Smith   PetscInt        nnz, i;
42508f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42518f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4252fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4253fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42548f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42556a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42566a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42578f8f2f0dSBarry Smith 
42588f8f2f0dSBarry Smith   PetscFunctionBegin;
4259aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
426008401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
426108401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
426208401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42638f8f2f0dSBarry Smith 
42649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42668f8f2f0dSBarry Smith 
42678f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42684c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42694c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42704c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42714c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42724c17f1ccSBarry Smith       }
42734c17f1ccSBarry Smith     }
42748f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42758f8f2f0dSBarry Smith     Iii = Ii[i];
42768f8f2f0dSBarry Smith     ldi = ld[i];
42778f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42789566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42799566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42809566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42818f8f2f0dSBarry Smith     ad += md;
42828f8f2f0dSBarry Smith     ao += nnz - md;
42838f8f2f0dSBarry Smith   }
42848f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42858f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42869566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42879566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42889566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42899566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42909566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42929566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42938f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42958f8f2f0dSBarry Smith }
42968f8f2f0dSBarry Smith 
42976a3d2595SBarry Smith /*@
429811a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
42996a3d2595SBarry Smith 
43006a3d2595SBarry Smith   Collective
43016a3d2595SBarry Smith 
43026a3d2595SBarry Smith   Input Parameters:
43036a3d2595SBarry Smith + mat - the matrix
43046a3d2595SBarry Smith - v   - matrix values, stored by row
43056a3d2595SBarry Smith 
43066a3d2595SBarry Smith   Level: intermediate
43076a3d2595SBarry Smith 
4308a4bd8bc0SBarry Smith   Notes:
43096a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
43106a3d2595SBarry Smith 
4311a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4312a4bd8bc0SBarry Smith 
43131cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4314a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
43156a3d2595SBarry Smith @*/
4316d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4317d71ae5a4SJacob Faibussowitsch {
43186a3d2595SBarry Smith   PetscInt        nnz, i, m;
43196a3d2595SBarry Smith   PetscBool       nooffprocentries;
43206a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
43216a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43226a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43236a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43246a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43256a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43266a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43276a3d2595SBarry Smith 
43286a3d2595SBarry Smith   PetscFunctionBegin;
43296a3d2595SBarry Smith   m = mat->rmap->n;
43306a3d2595SBarry Smith 
43316a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43326a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43336a3d2595SBarry Smith   Iii = 0;
43346a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43356a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43366a3d2595SBarry Smith     ldi = ld[i];
43376a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43386a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43396a3d2595SBarry Smith     ad += md;
4340810441c8SPierre Jolivet     if (ao) {
4341810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4342810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43436a3d2595SBarry Smith       ao += nnz - md;
4344810441c8SPierre Jolivet     }
43456a3d2595SBarry Smith     Iii += nnz;
43466a3d2595SBarry Smith   }
43476a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43486a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43496a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43506a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43516a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43526a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43536a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43546a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43556a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43566a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43586a3d2595SBarry Smith }
43596a3d2595SBarry Smith 
43605d83a8b1SBarry Smith /*@
436111a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4362273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4363273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43642ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4365273d9f13SBarry Smith 
4366d083f849SBarry Smith   Collective
4367273d9f13SBarry Smith 
4368273d9f13SBarry Smith   Input Parameters:
4369273d9f13SBarry Smith + comm  - MPI communicator
437011a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4371273d9f13SBarry Smith           This value should be the same as the local size used in creating the
4372273d9f13SBarry Smith           y vector for the matrix-vector product y = Ax.
4373273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
437445f401ebSJose E. Roman           x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4375273d9f13SBarry Smith           calculated if N is given) For square matrices n is almost always m.
437611a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
437711a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4378273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4379273d9f13SBarry Smith           (same value is used for all local rows)
4380273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4381273d9f13SBarry Smith           DIAGONAL portion of the local submatrix (possibly different for each row)
43822ef1f0ffSBarry Smith           or `NULL`, if `d_nz` is used to specify the nonzero structure.
4383273d9f13SBarry Smith           The size of this array is equal to the number of local rows, i.e 'm'.
4384273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4385273d9f13SBarry Smith           submatrix (same value is used for all local rows).
4386273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4387273d9f13SBarry Smith           OFF-DIAGONAL portion of the local submatrix (possibly different for
43882ef1f0ffSBarry Smith           each row) or `NULL`, if `o_nz` is used to specify the nonzero
4389273d9f13SBarry Smith           structure. The size of this array is equal to the number
4390273d9f13SBarry Smith           of local rows, i.e 'm'.
4391273d9f13SBarry Smith 
4392273d9f13SBarry Smith   Output Parameter:
4393273d9f13SBarry Smith . A - the matrix
4394273d9f13SBarry Smith 
439527430b45SBarry Smith   Options Database Keys:
439627430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
439727430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
439827430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
4399727bdf9bSBarry Smith                                       See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter`
4400727bdf9bSBarry Smith                                       to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
440127430b45SBarry Smith 
44022ef1f0ffSBarry Smith   Level: intermediate
44032ef1f0ffSBarry Smith 
440427430b45SBarry Smith   Notes:
440577433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4406f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
440711a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4408175b88e8SBarry Smith 
440949a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
441049a6f317SBarry Smith 
44112ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
44122ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4413273d9f13SBarry Smith   storage requirements for this matrix.
4414273d9f13SBarry Smith 
441511a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4416273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4417273d9f13SBarry Smith   that argument.
4418273d9f13SBarry Smith 
4419727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
4420727bdf9bSBarry Smith   `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
4421727bdf9bSBarry Smith 
4422273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4423273d9f13SBarry Smith   (possibly both).
4424273d9f13SBarry Smith 
442533a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
4426727bdf9bSBarry Smith   first `m0` rows belong to process 0, the next `m1` rows belong to
4427727bdf9bSBarry Smith   process 1, the next `m2` rows belong to process 2, etc., where
4428727bdf9bSBarry Smith   `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores
442933a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4430273d9f13SBarry Smith 
443133a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
443233a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4433df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
443433a7c187SSatish Balay 
443533a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
443633a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
443733a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
443833a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
443933a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
444033a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
444133a7c187SSatish Balay   illustrates this concept.
444233a7c187SSatish Balay 
444333a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
444433a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
444533a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
444633a7c187SSatish Balay   local matrix (a rectangular submatrix).
4447273d9f13SBarry Smith 
44482ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4449273d9f13SBarry Smith 
445097d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44512ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4452da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4453da57b5cdSKarl Rupp .vb
44542ef1f0ffSBarry Smith   MatCreate(..., &A);
44552ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44562ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44572ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4458da57b5cdSKarl Rupp .ve
445997d05335SKris Buschelman 
4460273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4461273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4462273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4463273d9f13SBarry Smith 
44642920cce0SJacob Faibussowitsch   Example Usage:
4465273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4466273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4467273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4468efc377ccSKarl Rupp   as follows
4469273d9f13SBarry Smith 
4470273d9f13SBarry Smith .vb
4471273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4472273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4473273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4474273d9f13SBarry Smith     -------------------------------------
4475273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4476273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4477273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4478273d9f13SBarry Smith     -------------------------------------
4479273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4480273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4481273d9f13SBarry Smith .ve
4482273d9f13SBarry Smith 
4483da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4484273d9f13SBarry Smith 
4485273d9f13SBarry Smith .vb
4486273d9f13SBarry Smith       A B C
4487273d9f13SBarry Smith       D E F
4488273d9f13SBarry Smith       G H I
4489273d9f13SBarry Smith .ve
4490273d9f13SBarry Smith 
4491273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4492273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4493273d9f13SBarry Smith 
4494273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4495273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4496273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4497273d9f13SBarry Smith 
4498273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4499273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4500273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4501273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
450227430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
4503273d9f13SBarry Smith   matrix, ans [DF] as another SeqAIJ matrix.
4504273d9f13SBarry Smith 
45052ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
45062ef1f0ffSBarry Smith   allocated for every row of the local diagonal submatrix, and `o_nz`
4507273d9f13SBarry Smith   storage locations are allocated for every row of the OFF-DIAGONAL submat.
45082ef1f0ffSBarry Smith   One way to choose `d_nz` and `o_nz` is to use the max nonzerors per local
4509273d9f13SBarry Smith   rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
45102ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4511273d9f13SBarry Smith .vb
451227430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
451327430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
451427430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4515273d9f13SBarry Smith .ve
45162ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4517273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4518273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4519273d9f13SBarry Smith   34 values.
4520273d9f13SBarry Smith 
45212ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4522a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4523da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4524273d9f13SBarry Smith .vb
452527430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
452627430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
452727430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4528273d9f13SBarry Smith .ve
4529273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4530273d9f13SBarry Smith   hence pre-allocation is perfect.
4531273d9f13SBarry Smith 
45321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4533727bdf9bSBarry Smith           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`,
4534727bdf9bSBarry Smith           `MatGetOwnershipRangesColumn()`, `PetscLayout`
4535273d9f13SBarry Smith @*/
4536d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4537d71ae5a4SJacob Faibussowitsch {
4538b1d57f15SBarry Smith   PetscMPIInt size;
4539273d9f13SBarry Smith 
4540273d9f13SBarry Smith   PetscFunctionBegin;
45419566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45429566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45439566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4544273d9f13SBarry Smith   if (size > 1) {
45459566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45469566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4547273d9f13SBarry Smith   } else {
45489566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45499566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4550273d9f13SBarry Smith   }
45513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4552273d9f13SBarry Smith }
4553195d93cdSBarry Smith 
45540b98dbb4SBarry Smith /*MC
45550b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90 - Returns the local pieces of this distributed matrix
45560b98dbb4SBarry Smith 
45570b98dbb4SBarry Smith     Synopsis:
45580b98dbb4SBarry Smith     MatMPIAIJGetSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45590b98dbb4SBarry Smith 
45600b98dbb4SBarry Smith     Not Collective
45610b98dbb4SBarry Smith 
45620b98dbb4SBarry Smith     Input Parameter:
45630b98dbb4SBarry Smith .   A - the `MATMPIAIJ` matrix
45640b98dbb4SBarry Smith 
45650b98dbb4SBarry Smith     Output Parameters:
45660b98dbb4SBarry Smith +   Ad - the diagonal portion of the matrix
45674cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45682ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45690b98dbb4SBarry Smith -   ierr - error code
45700b98dbb4SBarry Smith 
45710b98dbb4SBarry Smith      Level: advanced
45720b98dbb4SBarry Smith 
45730b98dbb4SBarry Smith     Note:
45740b98dbb4SBarry Smith     Use  `MatMPIAIJRestoreSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45750b98dbb4SBarry Smith 
45761cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJRestoreSeqAIJF90()`
45770b98dbb4SBarry Smith M*/
45780b98dbb4SBarry Smith 
45790b98dbb4SBarry Smith /*MC
45800b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90 - call after `MatMPIAIJGetSeqAIJF90()` when you no longer need access to the matrices and `colmap`
45810b98dbb4SBarry Smith 
45820b98dbb4SBarry Smith     Synopsis:
45830b98dbb4SBarry Smith     MatMPIAIJRestoreSeqAIJF90(Mat A, Mat Ad, Mat Ao, {PetscInt, pointer :: colmap(:)},integer ierr)
45840b98dbb4SBarry Smith 
45850b98dbb4SBarry Smith     Not Collective
45860b98dbb4SBarry Smith 
45870b98dbb4SBarry Smith     Input Parameters:
45880b98dbb4SBarry Smith +   A - the `MATMPIAIJ` matrix
45890b98dbb4SBarry Smith .   Ad - the diagonal portion of the matrix
45904cf0e950SBarry Smith .   Ao - the off-diagonal portion of the matrix
45912ef1f0ffSBarry Smith .   colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
45920b98dbb4SBarry Smith -   ierr - error code
45930b98dbb4SBarry Smith 
45940b98dbb4SBarry Smith      Level: advanced
45950b98dbb4SBarry Smith 
45961cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [](sec_fortranarrays), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJ()`, `MatMPIAIJGetSeqAIJF90()`
45970b98dbb4SBarry Smith M*/
45980b98dbb4SBarry Smith 
4599127ca0efSMatthew Knepley /*@C
46000ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4601127ca0efSMatthew Knepley 
46022ef1f0ffSBarry Smith   Not Collective
4603127ca0efSMatthew Knepley 
4604127ca0efSMatthew Knepley   Input Parameter:
460511a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4606127ca0efSMatthew Knepley 
4607127ca0efSMatthew Knepley   Output Parameters:
460811a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
460911a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
46102ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4611127ca0efSMatthew Knepley 
46120ab4885dSBarry Smith   Level: intermediate
46130ab4885dSBarry Smith 
461411a5261eSBarry Smith   Note:
46152ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
46162ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
46172ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4618127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4619127ca0efSMatthew Knepley 
4620fe59aa6dSJacob Faibussowitsch   Fortran Notes:
46210ab4885dSBarry Smith   `MatMPIAIJGetSeqAIJ()` Fortran binding is deprecated (since PETSc 3.19), use `MatMPIAIJGetSeqAIJF90()`
4622127ca0efSMatthew Knepley 
4623fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetSeqAIJF90()`, `MatMPIAIJRestoreSeqAIJF90()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4624127ca0efSMatthew Knepley @*/
4625d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4626d71ae5a4SJacob Faibussowitsch {
4627195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
462804cf37c7SBarry Smith   PetscBool   flg;
4629b1d57f15SBarry Smith 
4630195d93cdSBarry Smith   PetscFunctionBegin;
46319566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
463228b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
463321e72a00SBarry Smith   if (Ad) *Ad = a->A;
463421e72a00SBarry Smith   if (Ao) *Ao = a->B;
463521e72a00SBarry Smith   if (colmap) *colmap = a->garray;
46363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4637195d93cdSBarry Smith }
4638a2243be0SBarry Smith 
4639d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4640d71ae5a4SJacob Faibussowitsch {
4641110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
46429b8102ccSHong Zhang   PetscInt    *indx;
4643110bb6e1SHong Zhang   PetscScalar *values;
4644421ddf4dSJunchao Zhang   MatType      rootType;
46459b8102ccSHong Zhang 
46469b8102ccSHong Zhang   PetscFunctionBegin;
46479566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4648110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4649110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4650110bb6e1SHong Zhang 
465148a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4652a22543b6SHong Zhang     /* Check sum(n) = N */
46531c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
465408401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4655a22543b6SHong Zhang 
46569566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
46579b8102ccSHong Zhang     rstart -= m;
46589b8102ccSHong Zhang 
4659d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
46609b8102ccSHong Zhang     for (i = 0; i < m; i++) {
46619566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46629566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
46639566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
46649b8102ccSHong Zhang     }
46659b8102ccSHong Zhang 
46669566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
46679566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
46689566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46699566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46709566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46719566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46729566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46739566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4674d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46759566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46769b8102ccSHong Zhang   }
46779b8102ccSHong Zhang 
4678110bb6e1SHong Zhang   /* numeric phase */
46799566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46809b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46819566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46829b8102ccSHong Zhang     Ii = i + rstart;
46839566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46849566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46859b8102ccSHong Zhang   }
46869566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46879566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4689c5d6d63eSBarry Smith }
4690c5d6d63eSBarry Smith 
4691d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void *data)
4692d71ae5a4SJacob Faibussowitsch {
46936718818eSStefano Zampini   Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)data;
469451a7d1a8SHong Zhang 
469551a7d1a8SHong Zhang   PetscFunctionBegin;
46963ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
46979566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
46989566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
46999566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
47009566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
47019566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
47029566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
47039566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
47049566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
47059566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
47069566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
47079566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
47089566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
47099566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
47109566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
47113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
471251a7d1a8SHong Zhang }
471351a7d1a8SHong Zhang 
4714c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4715c6db04a5SJed Brown #include <petscbt.h>
47164ebed01fSBarry Smith 
4717d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4718d71ae5a4SJacob Faibussowitsch {
4719ce94432eSBarry Smith   MPI_Comm             comm;
472055d1abb9SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4721b1d57f15SBarry Smith   PetscMPIInt          size, rank, taga, *len_s;
4722a2ea699eSBarry Smith   PetscInt             N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj;
4723b1d57f15SBarry Smith   PetscInt             proc, m;
4724b1d57f15SBarry Smith   PetscInt           **buf_ri, **buf_rj;
4725b1d57f15SBarry Smith   PetscInt             k, anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4726b1d57f15SBarry Smith   PetscInt             nrows, **buf_ri_k, **nextrow, **nextai;
472755d1abb9SHong Zhang   MPI_Request         *s_waits, *r_waits;
472855d1abb9SHong Zhang   MPI_Status          *status;
4729fff043a9SJunchao Zhang   const MatScalar     *aa, *a_a;
4730dd6ea824SBarry Smith   MatScalar          **abuf_r, *ba_i;
473155d1abb9SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4732776b82aeSLisandro Dalcin   PetscContainer       container;
473355d1abb9SHong Zhang 
473455d1abb9SHong Zhang   PetscFunctionBegin;
47359566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
47369566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
47373c2c1871SHong Zhang 
47389566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47399566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
474055d1abb9SHong Zhang 
47419566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
474228b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
47439566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(container, (void **)&merge));
47449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4745fff043a9SJunchao Zhang   aa = a_a;
4746bf0cc555SLisandro Dalcin 
474755d1abb9SHong Zhang   bi     = merge->bi;
474855d1abb9SHong Zhang   bj     = merge->bj;
474955d1abb9SHong Zhang   buf_ri = merge->buf_ri;
475055d1abb9SHong Zhang   buf_rj = merge->buf_rj;
475155d1abb9SHong Zhang 
47529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
47537a2fc3feSBarry Smith   owners = merge->rowmap->range;
475455d1abb9SHong Zhang   len_s  = merge->len_s;
475555d1abb9SHong Zhang 
475655d1abb9SHong Zhang   /* send and recv matrix values */
47579566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
47589566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
475955d1abb9SHong Zhang 
47609566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
476155d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
476255d1abb9SHong Zhang     if (!len_s[proc]) continue;
476355d1abb9SHong Zhang     i = owners[proc];
47649566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
476555d1abb9SHong Zhang     k++;
476655d1abb9SHong Zhang   }
476755d1abb9SHong Zhang 
47689566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47699566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47709566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
477155d1abb9SHong Zhang 
47729566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47739566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
477455d1abb9SHong Zhang 
477555d1abb9SHong Zhang   /* insert mat values of mpimat */
47769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
477855d1abb9SHong Zhang 
477955d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
478055d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4781f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
478255d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4783a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
478455d1abb9SHong Zhang   }
478555d1abb9SHong Zhang 
478655d1abb9SHong Zhang   /* set values of ba */
47877a2fc3feSBarry Smith   m = merge->rowmap->n;
478855d1abb9SHong Zhang   for (i = 0; i < m; i++) {
478955d1abb9SHong Zhang     arow = owners[rank] + i;
479055d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
479155d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47929566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
479355d1abb9SHong Zhang 
479455d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
479555d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
479655d1abb9SHong Zhang     aj     = a->j + ai[arow];
4797fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
479855d1abb9SHong Zhang     nextaj = 0;
479955d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
480055d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
480155d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
480255d1abb9SHong Zhang       }
480355d1abb9SHong Zhang     }
480455d1abb9SHong Zhang 
480555d1abb9SHong Zhang     /* add received vals into ba */
480655d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
480755d1abb9SHong Zhang       /* i-th row */
480855d1abb9SHong Zhang       if (i == *nextrow[k]) {
480955d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4810f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4811f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
481255d1abb9SHong Zhang         nextaj = 0;
481355d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
481455d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
481555d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
481655d1abb9SHong Zhang           }
481755d1abb9SHong Zhang         }
48189371c9d4SSatish Balay         nextrow[k]++;
48199371c9d4SSatish Balay         nextai[k]++;
482055d1abb9SHong Zhang       }
482155d1abb9SHong Zhang     }
48229566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
482355d1abb9SHong Zhang   }
48249566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
48259566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
48269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
482755d1abb9SHong Zhang 
48289566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
48299566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
48309566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
48319566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
48329566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
48333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
483455d1abb9SHong Zhang }
483538f152feSBarry Smith 
4836d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4837d71ae5a4SJacob Faibussowitsch {
483855a3bba9SHong Zhang   Mat                  B_mpi;
4839c2234fe3SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)seqmat->data;
4840b1d57f15SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4841b1d57f15SBarry Smith   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
4842d0f46423SBarry Smith   PetscInt             M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
4843a2f3521dSMark F. Adams   PetscInt             len, proc, *dnz, *onz, bs, cbs;
4844c599c493SJunchao Zhang   PetscInt             k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4845b1d57f15SBarry Smith   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
484655d1abb9SHong Zhang   MPI_Request         *si_waits, *sj_waits, *ri_waits, *rj_waits;
484758cb9c82SHong Zhang   MPI_Status          *status;
48480298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
4849be0fcf8dSHong Zhang   PetscBT              lnkbt;
485051a7d1a8SHong Zhang   Mat_Merge_SeqsToMPI *merge;
4851776b82aeSLisandro Dalcin   PetscContainer       container;
485202c68681SHong Zhang 
4853e5f2cdd8SHong Zhang   PetscFunctionBegin;
48549566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
48553c2c1871SHong Zhang 
485638f152feSBarry Smith   /* make sure it is a PETSc comm */
48579566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
48589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
48599566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
486055d1abb9SHong Zhang 
48619566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
48629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4863e5f2cdd8SHong Zhang 
48646abd8857SHong Zhang   /* determine row ownership */
48659566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
48669566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
48679566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
48689566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
487255d1abb9SHong Zhang 
48737a2fc3feSBarry Smith   m      = merge->rowmap->n;
48747a2fc3feSBarry Smith   owners = merge->rowmap->range;
48756abd8857SHong Zhang 
48766abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48773e06a4e6SHong Zhang   len_s = merge->len_s;
487851a7d1a8SHong Zhang 
48792257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4880c2234fe3SHong Zhang   merge->nsend = 0;
4881409913e3SHong Zhang   for (proc = 0; proc < size; proc++) {
48822257cef7SHong Zhang     len_si[proc] = 0;
48833e06a4e6SHong Zhang     if (proc == rank) {
48846abd8857SHong Zhang       len_s[proc] = 0;
48853e06a4e6SHong Zhang     } else {
488602c68681SHong Zhang       len_si[proc] = owners[proc + 1] - owners[proc] + 1;
48873e06a4e6SHong Zhang       len_s[proc]  = ai[owners[proc + 1]] - ai[owners[proc]]; /* num of rows to be sent to [proc] */
48883e06a4e6SHong Zhang     }
48893e06a4e6SHong Zhang     if (len_s[proc]) {
4890c2234fe3SHong Zhang       merge->nsend++;
48912257cef7SHong Zhang       nrows = 0;
48922257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48932257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48942257cef7SHong Zhang       }
48952257cef7SHong Zhang       len_si[proc] = 2 * (nrows + 1);
48962257cef7SHong Zhang       len += len_si[proc];
4897409913e3SHong Zhang     }
489858cb9c82SHong Zhang   }
4899409913e3SHong Zhang 
49002257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
49019566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
49029566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4903671beff6SHong Zhang 
49043e06a4e6SHong Zhang   /* post the Irecv of j-structure */
49059566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
49069566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
490702c68681SHong Zhang 
49083e06a4e6SHong Zhang   /* post the Isend of j-structure */
49099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
49103e06a4e6SHong Zhang 
49112257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
4912409913e3SHong Zhang     if (!len_s[proc]) continue;
491302c68681SHong Zhang     i = owners[proc];
49149566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
491551a7d1a8SHong Zhang     k++;
491651a7d1a8SHong Zhang   }
491751a7d1a8SHong Zhang 
49183e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
49199566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
49209566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
492102c68681SHong Zhang 
492202c68681SHong Zhang   /* send and recv i-structure */
49239566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
49249566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
492502c68681SHong Zhang 
49269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
49273e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
49282257cef7SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
492902c68681SHong Zhang     if (!len_s[proc]) continue;
49303e06a4e6SHong Zhang     /* form outgoing message for i-structure:
49313e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
49323e06a4e6SHong Zhang                [1:nrows]:           row index (global)
49333e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
49343e06a4e6SHong Zhang     */
49352257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
49363e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
49373e06a4e6SHong Zhang     buf_si[0]   = nrows;
49383e06a4e6SHong Zhang     buf_si_i[0] = 0;
49393e06a4e6SHong Zhang     nrows       = 0;
49403e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
49413e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
49423e06a4e6SHong Zhang       if (anzi) {
49433e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
49443e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
49453e06a4e6SHong Zhang         nrows++;
49463e06a4e6SHong Zhang       }
49473e06a4e6SHong Zhang     }
49489566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
494902c68681SHong Zhang     k++;
49502257cef7SHong Zhang     buf_si += len_si[proc];
495102c68681SHong Zhang   }
49522257cef7SHong Zhang 
49539566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
49549566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
495502c68681SHong Zhang 
49569566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
495748a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
49583e06a4e6SHong Zhang 
49599566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
49609566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
49619566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
49629566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
49639566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
49649566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
49659566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
496658cb9c82SHong Zhang 
4967bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
496858cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
497058cb9c82SHong Zhang   bi[0] = 0;
497158cb9c82SHong Zhang 
4972be0fcf8dSHong Zhang   /* create and initialize a linked list */
4973be0fcf8dSHong Zhang   nlnk = N + 1;
49749566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
497558cb9c82SHong Zhang 
4976bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4977bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49789566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49792205254eSKarl Rupp 
498058cb9c82SHong Zhang   current_space = free_space;
498158cb9c82SHong Zhang 
4982bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49841d79065fSBarry Smith 
49853e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49862257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49873e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49883e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4989a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49903e06a4e6SHong Zhang   }
49912257cef7SHong Zhang 
4992d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4993bcc1bcd5SHong Zhang   len = 0;
499458cb9c82SHong Zhang   for (i = 0; i < m; i++) {
499558cb9c82SHong Zhang     bnzi = 0;
499658cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
499758cb9c82SHong Zhang     arow = owners[rank] + i;
499858cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
499958cb9c82SHong Zhang     aj   = a->j + ai[arow];
50009566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
500158cb9c82SHong Zhang     bnzi += nlnk;
500258cb9c82SHong Zhang     /* add received col data into lnk */
500351a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
500455d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
50053e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
50063e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
50079566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
50083e06a4e6SHong Zhang         bnzi += nlnk;
50099371c9d4SSatish Balay         nextrow[k]++;
50109371c9d4SSatish Balay         nextai[k]++;
50113e06a4e6SHong Zhang       }
501258cb9c82SHong Zhang     }
5013bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
501458cb9c82SHong Zhang 
501558cb9c82SHong Zhang     /* if free space is not available, make more free space */
501648a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
501758cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
50189566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
50199566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
5020bcc1bcd5SHong Zhang 
502158cb9c82SHong Zhang     current_space->array += bnzi;
502258cb9c82SHong Zhang     current_space->local_used += bnzi;
502358cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
502458cb9c82SHong Zhang 
502558cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
502658cb9c82SHong Zhang   }
5027bcc1bcd5SHong Zhang 
50289566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
5029bcc1bcd5SHong Zhang 
50309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[m] + 1, &bj));
50319566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
50329566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
5033409913e3SHong Zhang 
5034bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
50359566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
50369566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
503754b84b50SHong Zhang   if (n == PETSC_DECIDE) {
50389566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
503954b84b50SHong Zhang   } else {
50409566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
504154b84b50SHong Zhang   }
50429566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
50439566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
50449566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
5045d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
50469566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
504758cb9c82SHong Zhang 
504890431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
50496abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
5050affca5deSHong Zhang   merge->bi        = bi;
5051affca5deSHong Zhang   merge->bj        = bj;
505202c68681SHong Zhang   merge->buf_ri    = buf_ri;
505302c68681SHong Zhang   merge->buf_rj    = buf_rj;
50540298fd71SBarry Smith   merge->coi       = NULL;
50550298fd71SBarry Smith   merge->coj       = NULL;
50560298fd71SBarry Smith   merge->owners_co = NULL;
5057affca5deSHong Zhang 
50589566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
5059bf0cc555SLisandro Dalcin 
5060affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
50619566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
50629566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
50639566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetUserDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI));
50649566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
50659566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
5066affca5deSHong Zhang   *mpimat = B_mpi;
506738f152feSBarry Smith 
50689566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5070e5f2cdd8SHong Zhang }
507125616d81SHong Zhang 
5072cc4c1da9SBarry Smith /*@
507311a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5074d4036a1aSHong Zhang   matrices from each processor
5075d4036a1aSHong Zhang 
5076d083f849SBarry Smith   Collective
5077d4036a1aSHong Zhang 
5078d4036a1aSHong Zhang   Input Parameters:
5079d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5080d4036a1aSHong Zhang . seqmat - the input sequential matrices
508111a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
508211a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
508311a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5084d4036a1aSHong Zhang 
5085d4036a1aSHong Zhang   Output Parameter:
5086d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5087d4036a1aSHong Zhang 
5088d4036a1aSHong Zhang   Level: advanced
5089d4036a1aSHong Zhang 
509011a5261eSBarry Smith   Note:
5091d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
5092d4036a1aSHong Zhang   The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be
5093b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
50942ef1f0ffSBarry Smith 
50951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5096d4036a1aSHong Zhang @*/
5097d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5098d71ae5a4SJacob Faibussowitsch {
50997e63b356SHong Zhang   PetscMPIInt size;
510055d1abb9SHong Zhang 
510155d1abb9SHong Zhang   PetscFunctionBegin;
51029566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
51037e63b356SHong Zhang   if (size == 1) {
51049566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
51057e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
51069566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
51077e63b356SHong Zhang     } else {
51089566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
51097e63b356SHong Zhang     }
51109566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51113ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
51127e63b356SHong Zhang   }
51139566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
511448a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
51159566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
51169566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
51173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
511855d1abb9SHong Zhang }
51194ebed01fSBarry Smith 
5120bc08b0f1SBarry Smith /*@
51212920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
51228a9c020eSBarry Smith 
51238a9c020eSBarry Smith   Not Collective
51248a9c020eSBarry Smith 
51252fe279fdSBarry Smith   Input Parameter:
512620f4b53cSBarry Smith . A - the matrix
51278a9c020eSBarry Smith 
51288a9c020eSBarry Smith   Output Parameter:
51298a9c020eSBarry Smith . A_loc - the local sequential matrix generated
51308a9c020eSBarry Smith 
51318a9c020eSBarry Smith   Level: developer
51328a9c020eSBarry Smith 
51338a9c020eSBarry Smith   Notes:
51342920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
51352920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
51362920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
51372920cce0SJacob Faibussowitsch 
513811a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51398a9c020eSBarry Smith 
51402920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
51412920cce0SJacob Faibussowitsch 
514211a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
51438a9c020eSBarry Smith 
51441cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
51458a9c020eSBarry Smith @*/
5146d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5147d71ae5a4SJacob Faibussowitsch {
51488a9c020eSBarry Smith   PetscBool mpi;
51498a9c020eSBarry Smith 
51508a9c020eSBarry Smith   PetscFunctionBegin;
51518a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
51528a9c020eSBarry Smith   if (mpi) {
51538a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
51548a9c020eSBarry Smith   } else {
51558a9c020eSBarry Smith     *A_loc = A;
51568a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
51578a9c020eSBarry Smith   }
51583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51598a9c020eSBarry Smith }
51608a9c020eSBarry Smith 
51618a9c020eSBarry Smith /*@
51622920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
516325616d81SHong Zhang 
516432fba14fSHong Zhang   Not Collective
516525616d81SHong Zhang 
516625616d81SHong Zhang   Input Parameters:
516725616d81SHong Zhang + A     - the matrix
516811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
516925616d81SHong Zhang 
517025616d81SHong Zhang   Output Parameter:
517125616d81SHong Zhang . A_loc - the local sequential matrix generated
517225616d81SHong Zhang 
517325616d81SHong Zhang   Level: developer
517425616d81SHong Zhang 
517577c65a98SStefano Zampini   Notes:
51762920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51772920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51782920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51792920cce0SJacob Faibussowitsch 
518011a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51818a9c020eSBarry Smith 
51822920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51832920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51842920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51852920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
518677c65a98SStefano Zampini 
51871cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
518825616d81SHong Zhang @*/
5189d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5190d71ae5a4SJacob Faibussowitsch {
519101b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5192b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5193b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5194ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5195ce496241SStefano Zampini   PetscScalar       *ca, *cam;
519677c65a98SStefano Zampini   PetscMPIInt        size;
5197d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
51985a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
51998661ff28SBarry Smith   PetscBool          match;
520025616d81SHong Zhang 
520125616d81SHong Zhang   PetscFunctionBegin;
52029566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
520328b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
52049566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
520577c65a98SStefano Zampini   if (size == 1) {
520677c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52079566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
520877c65a98SStefano Zampini       *A_loc = mpimat->A;
520977c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52109566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
521177c65a98SStefano Zampini     }
52123ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
521377c65a98SStefano Zampini   }
521470a9ba44SHong Zhang 
52159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5216f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5217f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
52189371c9d4SSatish Balay   ai = a->i;
52199371c9d4SSatish Balay   aj = a->j;
52209371c9d4SSatish Balay   bi = b->i;
52219371c9d4SSatish Balay   bj = b->j;
52229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
52239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5224ce496241SStefano Zampini   aa = aav;
5225ce496241SStefano Zampini   ba = bav;
522601b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
52279566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5228dea91ad1SHong Zhang     ci[0] = 0;
5229ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
52309566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
52319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5232dea91ad1SHong Zhang     k = 0;
523301b7ae99SHong Zhang     for (i = 0; i < am; i++) {
52345a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52355a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
523601b7ae99SHong Zhang       /* off-diagonal portion of A */
52375a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52385a7d977cSHong Zhang         col = cmap[*bj];
52395a7d977cSHong Zhang         if (col >= cstart) break;
52409371c9d4SSatish Balay         cj[k] = col;
52419371c9d4SSatish Balay         bj++;
52425a7d977cSHong Zhang         ca[k++] = *ba++;
52435a7d977cSHong Zhang       }
52445a7d977cSHong Zhang       /* diagonal portion of A */
52455a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
52465a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
52475a7d977cSHong Zhang         ca[k++] = *aa++;
52485a7d977cSHong Zhang       }
52495a7d977cSHong Zhang       /* off-diagonal portion of A */
52505a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
52515a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
52525a7d977cSHong Zhang         ca[k++] = *ba++;
52535a7d977cSHong Zhang       }
525425616d81SHong Zhang     }
5255dea91ad1SHong Zhang     /* put together the new matrix */
52569566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5257dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5258dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5259dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5260e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5261e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5262dea91ad1SHong Zhang     mat->nonew   = 0;
52635a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
52645a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5265fff043a9SJunchao Zhang     ci  = mat->i;
5266fff043a9SJunchao Zhang     cj  = mat->j;
52679566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
52685a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52695a7d977cSHong Zhang       /* off-diagonal portion of A */
52705a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52715a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52725a7d977cSHong Zhang         col = cmap[*bj];
52735a7d977cSHong Zhang         if (col >= cstart) break;
52749371c9d4SSatish Balay         *cam++ = *ba++;
52759371c9d4SSatish Balay         bj++;
52765a7d977cSHong Zhang       }
52775a7d977cSHong Zhang       /* diagonal portion of A */
5278ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5279a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52805a7d977cSHong Zhang       /* off-diagonal portion of A */
5281f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52829371c9d4SSatish Balay         *cam++ = *ba++;
52839371c9d4SSatish Balay         bj++;
5284f33d1a9aSHong Zhang       }
52855a7d977cSHong Zhang     }
52869566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
528798921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52889566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52899566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52909566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
529225616d81SHong Zhang }
529325616d81SHong Zhang 
5294ed502f03SStefano Zampini /*@
529511a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52964cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5297ed502f03SStefano Zampini 
5298ed502f03SStefano Zampini   Not Collective
5299ed502f03SStefano Zampini 
5300ed502f03SStefano Zampini   Input Parameters:
5301ed502f03SStefano Zampini + A     - the matrix
530211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5303ed502f03SStefano Zampini 
5304d8d19677SJose E. Roman   Output Parameters:
53052ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5306ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5307ed502f03SStefano Zampini 
5308ed502f03SStefano Zampini   Level: developer
5309ed502f03SStefano Zampini 
531011a5261eSBarry Smith   Note:
53112ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
53124cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5313ed502f03SStefano Zampini 
53141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5315ed502f03SStefano Zampini @*/
5316d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5317d71ae5a4SJacob Faibussowitsch {
5318ed502f03SStefano Zampini   Mat             Ao, Ad;
5319ed502f03SStefano Zampini   const PetscInt *cmap;
5320ed502f03SStefano Zampini   PetscMPIInt     size;
5321ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5322ed502f03SStefano Zampini 
5323ed502f03SStefano Zampini   PetscFunctionBegin;
53249566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
53259566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5326ed502f03SStefano Zampini   if (size == 1) {
5327ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
53289566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5329ed502f03SStefano Zampini       *A_loc = Ad;
5330ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53319566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5332ed502f03SStefano Zampini     }
53339566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
53343ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5335ed502f03SStefano Zampini   }
53369566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
53379566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5338ed502f03SStefano Zampini   if (f) {
53399566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5340ed502f03SStefano Zampini   } else {
5341ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5342ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5343ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5344ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5345ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5346ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5347ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5348ed502f03SStefano Zampini     PetscScalar       *ca;
5349ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5350ed502f03SStefano Zampini 
53519566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
53529566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
53539566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
53549566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5355ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5356ed502f03SStefano Zampini       PetscInt k;
53579566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
53589566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
53599566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5360ed502f03SStefano Zampini       ci[0] = 0;
5361ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5362ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5363ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5364ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5365ed502f03SStefano Zampini         /* diagonal portion of A */
5366ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5367ed502f03SStefano Zampini           cj[k] = *aj++;
5368ed502f03SStefano Zampini           ca[k] = *aa++;
5369ed502f03SStefano Zampini         }
5370ed502f03SStefano Zampini         /* off-diagonal portion of A */
5371ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5372ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5373ed502f03SStefano Zampini           ca[k] = *ba++;
5374ed502f03SStefano Zampini         }
5375ed502f03SStefano Zampini       }
5376ed502f03SStefano Zampini       /* put together the new matrix */
53779566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5378ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5379ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5380ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5381ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5382ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5383ed502f03SStefano Zampini       c->nonew   = 0;
53849566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5385ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53869566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5387ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5388ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5389ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5390ed502f03SStefano Zampini         /* diagonal portion of A */
5391ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5392ed502f03SStefano Zampini         /* off-diagonal portion of A */
5393ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5394ed502f03SStefano Zampini       }
53959566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
539698921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53979566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
53989566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5399ed502f03SStefano Zampini     if (glob) {
5400ed502f03SStefano Zampini       PetscInt cst, *gidx;
5401ed502f03SStefano Zampini 
54029566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
54039566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5404ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5405ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
54069566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5407ed502f03SStefano Zampini     }
5408ed502f03SStefano Zampini   }
54099566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
54103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5411ed502f03SStefano Zampini }
5412ed502f03SStefano Zampini 
541332fba14fSHong Zhang /*@C
541411a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
541532fba14fSHong Zhang 
541632fba14fSHong Zhang   Not Collective
541732fba14fSHong Zhang 
541832fba14fSHong Zhang   Input Parameters:
541932fba14fSHong Zhang + A     - the matrix
542011a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
542120f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
542220f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
542332fba14fSHong Zhang 
542432fba14fSHong Zhang   Output Parameter:
542532fba14fSHong Zhang . A_loc - the local sequential matrix generated
542632fba14fSHong Zhang 
542732fba14fSHong Zhang   Level: developer
542832fba14fSHong Zhang 
54291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
543032fba14fSHong Zhang @*/
5431d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5432d71ae5a4SJacob Faibussowitsch {
543332fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
543432fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
543532fba14fSHong Zhang   IS          isrowa, iscola;
543632fba14fSHong Zhang   Mat        *aloc;
54374a2b5492SBarry Smith   PetscBool   match;
543832fba14fSHong Zhang 
543932fba14fSHong Zhang   PetscFunctionBegin;
54409566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
544128b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
54429566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
544332fba14fSHong Zhang   if (!row) {
54449371c9d4SSatish Balay     start = A->rmap->rstart;
54459371c9d4SSatish Balay     end   = A->rmap->rend;
54469566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
544732fba14fSHong Zhang   } else {
544832fba14fSHong Zhang     isrowa = *row;
544932fba14fSHong Zhang   }
545032fba14fSHong Zhang   if (!col) {
5451d0f46423SBarry Smith     start = A->cmap->rstart;
545232fba14fSHong Zhang     cmap  = a->garray;
5453d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5454d0f46423SBarry Smith     nzB   = a->B->cmap->n;
54559566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
545632fba14fSHong Zhang     ncols = 0;
545732fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
545832fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
545932fba14fSHong Zhang       else break;
546032fba14fSHong Zhang     }
546132fba14fSHong Zhang     imark = i;
546232fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
546332fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
54649566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
546532fba14fSHong Zhang   } else {
546632fba14fSHong Zhang     iscola = *col;
546732fba14fSHong Zhang   }
546832fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54699566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
547032fba14fSHong Zhang     aloc[0] = *A_loc;
547132fba14fSHong Zhang   }
54729566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5473109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54749566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5475109e0772SStefano Zampini   }
547632fba14fSHong Zhang   *A_loc = aloc[0];
54779566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
547848a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
547948a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
548232fba14fSHong Zhang }
548332fba14fSHong Zhang 
54845c65b9ecSFande Kong /*
54855c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54865c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54875c65b9ecSFande Kong  * on a global size.
54885c65b9ecSFande Kong  * */
5489ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5490d71ae5a4SJacob Faibussowitsch {
54915c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5492f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5493131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5494131c27b5Sprj-   PetscMPIInt            owner;
54955c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54965c65b9ecSFande Kong   const PetscInt        *lrowindices;
54975c65b9ecSFande Kong   PetscSF                sf, osf;
54985c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
54995c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
55005c65b9ecSFande Kong   MPI_Comm               comm;
55015c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5502fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
55035c65b9ecSFande Kong 
55045c65b9ecSFande Kong   PetscFunctionBegin;
55059566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
55065c65b9ecSFande Kong   /* plocalsize is the number of roots
55075c65b9ecSFande Kong    * nrows is the number of leaves
55085c65b9ecSFande Kong    * */
55099566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
55109566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
55119566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
55129566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
55135c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55145c65b9ecSFande Kong     /* Find a remote index and an owner for a row
55155c65b9ecSFande Kong      * The row could be local or remote
55165c65b9ecSFande Kong      * */
551734bcad68SFande Kong     owner = 0;
551834bcad68SFande Kong     lidx  = 0;
55199566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
55205c65b9ecSFande Kong     iremote[i].index = lidx;
55215c65b9ecSFande Kong     iremote[i].rank  = owner;
55225c65b9ecSFande Kong   }
55235c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
55249566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5525f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
55265c65b9ecSFande Kong    * offsets
55275c65b9ecSFande Kong    * */
55289566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55299566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55309566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5531bc8e477aSFande Kong 
55329566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
55339566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
55349566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
55355c65b9ecSFande Kong   roffsets[0] = 0;
55365c65b9ecSFande Kong   roffsets[1] = 0;
55375c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
55384cf0e950SBarry Smith     /* diagonal */
55395c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
55404cf0e950SBarry Smith     /* off-diagonal */
55415c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
55425c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
55435c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
55445c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
55455c65b9ecSFande Kong   }
55469566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
55479566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
55485c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
55499566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55509566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55519566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
55529566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
55539566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55549566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
55559566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
55565c65b9ecSFande Kong   dntotalcols = 0;
55575c65b9ecSFande Kong   ontotalcols = 0;
5558bc8e477aSFande Kong   ncol        = 0;
55595c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
55605c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5561bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
55624cf0e950SBarry Smith     /* diagonal */
55635c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
55644cf0e950SBarry Smith     /* off-diagonal */
55655c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
55665c65b9ecSFande Kong   }
55675c65b9ecSFande Kong   /* We do not need to figure the right number of columns
55685c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55695c65b9ecSFande Kong    * */
55709566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55719566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55729566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55735c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55744cf0e950SBarry Smith   /* diagonal */
55759566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55764cf0e950SBarry Smith   /* off-diagonal */
55779566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55784cf0e950SBarry Smith   /* diagonal */
55799566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55804cf0e950SBarry Smith   /* off-diagonal */
55819566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55825c65b9ecSFande Kong   dntotalcols = 0;
55835c65b9ecSFande Kong   ontotalcols = 0;
55845c65b9ecSFande Kong   ntotalcols  = 0;
55855c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
558634bcad68SFande Kong     owner = 0;
55879566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55885c65b9ecSFande Kong     /* Set iremote for diag matrix */
55895c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55905c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55915c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55925c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55935c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55945c65b9ecSFande Kong     }
55954cf0e950SBarry Smith     /* off-diagonal */
55965c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
55975c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
55985c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
55995c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
56005c65b9ecSFande Kong     }
56015c65b9ecSFande Kong   }
56029566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
56039566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
56049566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
56059566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
56065c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
56075c65b9ecSFande Kong    * Diag matrix
56085c65b9ecSFande Kong    * */
56099566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
56109566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
56119566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
56125c65b9ecSFande Kong 
56139566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
56144cf0e950SBarry Smith   /* off-diagonal */
56159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
56169566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
56179566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
56189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56204cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
56219566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56229566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56239566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
56245c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
56255c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
56269566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56275c65b9ecSFande Kong   /* We want P_oth store global indices */
56289566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
56295c65b9ecSFande Kong   /* Use memory scalable approach */
56309566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
56319566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
56329566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56339566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
56345c65b9ecSFande Kong   /* Convert back to local indices */
56355c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
56369566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
56375c65b9ecSFande Kong   nout = 0;
56389566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
563908401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
56409566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
56415c65b9ecSFande Kong   /* Exchange values */
56429566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56439566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56465c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
56475c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
56489566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
56499566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
56505c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
56519566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
56529566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
56539566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
56549566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
56553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56565c65b9ecSFande Kong }
56575c65b9ecSFande Kong 
56585c65b9ecSFande Kong /*
56595c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
56605c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
56615c65b9ecSFande Kong  * */
5662d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5663d71ae5a4SJacob Faibussowitsch {
56645c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5665bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5666bc8e477aSFande Kong   IS          rows, map;
5667bc8e477aSFande Kong   PetscHMapI  hamp;
5668bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56695c65b9ecSFande Kong   MPI_Comm    comm;
56705c65b9ecSFande Kong   PetscSF     sf, osf;
5671bc8e477aSFande Kong   PetscBool   has;
56725c65b9ecSFande Kong 
56735c65b9ecSFande Kong   PetscFunctionBegin;
56749566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56759566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56765c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56775c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56785c65b9ecSFande Kong    * */
56795c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56805c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5681eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56829566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5683bc8e477aSFande Kong     count = 0;
5684bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5685bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5686bc8e477aSFande Kong       key = a->garray[i] / dof;
56879566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5688bc8e477aSFande Kong       if (!has) {
5689bc8e477aSFande Kong         mapping[i] = count;
56909566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5691bc8e477aSFande Kong       } else {
5692bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5693bc8e477aSFande Kong         mapping[i] = count - 1;
56945c65b9ecSFande Kong       }
5695bc8e477aSFande Kong     }
56969566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
56979566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5698eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
56999566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
57005c65b9ecSFande Kong     off = 0;
57019566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
57029566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
57039566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
57049566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
57055c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
57069566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
57079566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
57089566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
57099566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
57109566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
57115c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
57125c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
571335cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5714fff043a9SJunchao Zhang      */
5715fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5716fff043a9SJunchao Zhang 
57179566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
57189566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
571908401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
57205c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
57215c65b9ecSFande Kong     /* Update values in place */
57229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
57239566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
57249566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57259566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57269566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
57279566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
57289566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
57299566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
57306718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
57319566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
57323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57335c65b9ecSFande Kong }
57345c65b9ecSFande Kong 
573525616d81SHong Zhang /*@C
573620f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
573725616d81SHong Zhang 
5738c3339decSBarry Smith   Collective
573925616d81SHong Zhang 
574025616d81SHong Zhang   Input Parameters:
574111a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
574211a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
574311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
574425616d81SHong Zhang 
5745f1a722f8SMatthew G. Knepley   Output Parameters:
574627430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
574727430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5748f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
574925616d81SHong Zhang 
575025616d81SHong Zhang   Level: developer
575125616d81SHong Zhang 
575220f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
575325616d81SHong Zhang @*/
5754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5755d71ae5a4SJacob Faibussowitsch {
5756899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5757b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
575825616d81SHong Zhang   IS          isrowb, iscolb;
57590298fd71SBarry Smith   Mat        *bseq = NULL;
576025616d81SHong Zhang 
576125616d81SHong Zhang   PetscFunctionBegin;
576220f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
576320f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57649566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
576525616d81SHong Zhang 
576625616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5767d0f46423SBarry Smith     start = A->cmap->rstart;
576825616d81SHong Zhang     cmap  = a->garray;
5769d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5770d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57719566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
577225616d81SHong Zhang     ncols = 0;
57730390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
577425616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
577525616d81SHong Zhang       else break;
577625616d81SHong Zhang     }
577725616d81SHong Zhang     imark = i;
57780390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57790390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57809566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57819566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
578225616d81SHong Zhang   } else {
578308401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57849371c9d4SSatish Balay     isrowb = *rowb;
57859371c9d4SSatish Balay     iscolb = *colb;
57869566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
578725616d81SHong Zhang     bseq[0] = *B_seq;
578825616d81SHong Zhang   }
57899566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
579025616d81SHong Zhang   *B_seq = bseq[0];
57919566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
579225616d81SHong Zhang   if (!rowb) {
57939566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
579425616d81SHong Zhang   } else {
579525616d81SHong Zhang     *rowb = isrowb;
579625616d81SHong Zhang   }
579725616d81SHong Zhang   if (!colb) {
57989566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
579925616d81SHong Zhang   } else {
580025616d81SHong Zhang     *colb = iscolb;
580125616d81SHong Zhang   }
58029566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
58033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
580425616d81SHong Zhang }
5805429d309bSHong Zhang 
5806f8487c73SHong Zhang /*
580727430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
580801b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5809429d309bSHong Zhang 
5810c3339decSBarry Smith     Collective
5811429d309bSHong Zhang 
5812429d309bSHong Zhang    Input Parameters:
581327430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
581427430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5815429d309bSHong Zhang 
5816429d309bSHong Zhang    Output Parameter:
58170298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
58180298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
58190298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5820598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5821429d309bSHong Zhang 
582211a5261eSBarry Smith     Developer Note:
582311a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
58246eb45d04SBarry Smith      for this matrix. This is not desirable..
58256eb45d04SBarry Smith 
5826429d309bSHong Zhang     Level: developer
5827429d309bSHong Zhang 
5828f8487c73SHong Zhang */
5829d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5830d71ae5a4SJacob Faibussowitsch {
5831899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
583287025532SHong Zhang   Mat_SeqAIJ        *b_oth;
58334b8d542aSHong Zhang   VecScatter         ctx;
5834ce94432eSBarry Smith   MPI_Comm           comm;
58353515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
58363515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5837277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
5838f4259b30SLisandro Dalcin   PetscInt           i, j, k = 0, l, ll, nrecvs, nsends, nrows, *rstartsj = NULL, *sstartsj, len;
5839277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5840ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5841ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5842429d309bSHong Zhang 
5843429d309bSHong Zhang   PetscFunctionBegin;
58449566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
58459566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5846a7c7454dSHong Zhang 
584720f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
584820f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
58499566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
58509566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5851a6b2eed2SHong Zhang 
5852ec07b8f8SHong Zhang   if (size == 1) {
5853ec07b8f8SHong Zhang     startsj_s = NULL;
5854ec07b8f8SHong Zhang     bufa_ptr  = NULL;
585552f7967eSHong Zhang     *B_oth    = NULL;
58563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5857ec07b8f8SHong Zhang   }
5858ec07b8f8SHong Zhang 
5859fa83eaafSHong Zhang   ctx = a->Mvctx;
58604b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
58614b8d542aSHong Zhang 
58629566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
58633515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
58649566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
58659566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
58669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5867ddea5d60SJunchao Zhang   rwaits = reqs;
58688e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5869429d309bSHong Zhang 
5870b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5871429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5872a6b2eed2SHong Zhang     /* i-array */
5873a6b2eed2SHong Zhang     /*  post receives */
58749566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5875a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
587674268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5877e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58789566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5879429d309bSHong Zhang     }
5880a6b2eed2SHong Zhang 
5881a6b2eed2SHong Zhang     /* pack the outgoing message */
58829566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58832205254eSKarl Rupp 
58842205254eSKarl Rupp     sstartsj[0] = 0;
58852205254eSKarl Rupp     rstartsj[0] = 0;
5886a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58873515ee7fSJunchao Zhang     if (nsends) {
58883515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58899566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58903515ee7fSJunchao Zhang     }
5891a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58923515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5893e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
589487025532SHong Zhang       for (j = 0; j < nrows; j++) {
5895d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5896e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
58979566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
58982205254eSKarl Rupp 
5899e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
59002205254eSKarl Rupp 
5901e42f35eeSHong Zhang           len += ncols;
59029566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5903e42f35eeSHong Zhang         }
5904a6b2eed2SHong Zhang         k++;
5905429d309bSHong Zhang       }
59069566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
59072205254eSKarl Rupp 
5908dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5909429d309bSHong Zhang     }
591087025532SHong Zhang     /* recvs and sends of i-array are completed */
59119566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59129566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5913e42f35eeSHong Zhang 
5914a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
59159566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufj));
59169566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len + 1, &bufa));
5917a6b2eed2SHong Zhang 
591887025532SHong Zhang     /* create i-array of B_oth */
59199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(aBn + 2, &b_othi));
59202205254eSKarl Rupp 
592187025532SHong Zhang     b_othi[0] = 0;
5922a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5923a6b2eed2SHong Zhang     k         = 0;
5924a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
59253515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
59263515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
592787025532SHong Zhang       for (j = 0; j < nrows; j++) {
592887025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
59299566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5930f91af8c7SBarry Smith         k++;
5931a6b2eed2SHong Zhang       }
5932dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5933a6b2eed2SHong Zhang     }
59349566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5935a6b2eed2SHong Zhang 
59366aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
59379566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj));
59389566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha));
5939a6b2eed2SHong Zhang 
594087025532SHong Zhang     /* j-array */
5941a6b2eed2SHong Zhang     /*  post receives of j-array */
5942a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
594387025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59449566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5945a6b2eed2SHong Zhang     }
5946e42f35eeSHong Zhang 
5947e42f35eeSHong Zhang     /* pack the outgoing message j-array */
59483515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5949a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5950e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
5951a6b2eed2SHong Zhang       bufJ  = bufj + sstartsj[i];
595287025532SHong Zhang       for (j = 0; j < nrows; j++) {
5953d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5954e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
59559566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5956ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
59579566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5958e42f35eeSHong Zhang         }
595987025532SHong Zhang       }
59609566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
596187025532SHong Zhang     }
596287025532SHong Zhang 
596387025532SHong Zhang     /* recvs and sends of j-array are completed */
59649566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
596587025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5966b7f45c76SHong Zhang     sstartsj = *startsj_s;
59671d79065fSBarry Smith     rstartsj = *startsj_r;
596887025532SHong Zhang     bufa     = *bufa_ptr;
596987025532SHong Zhang     b_oth    = (Mat_SeqAIJ *)(*B_oth)->data;
59709566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5971ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
597287025532SHong Zhang 
597387025532SHong Zhang   /* a-array */
597487025532SHong Zhang   /*  post receives of a-array */
597587025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
597687025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
59779566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
597887025532SHong Zhang   }
5979e42f35eeSHong Zhang 
5980e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59813515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
598287025532SHong Zhang   for (i = 0; i < nsends; i++) {
5983e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
598487025532SHong Zhang     bufA  = bufa + sstartsj[i];
598587025532SHong Zhang     for (j = 0; j < nrows; j++) {
5986d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5987e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59889566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5989ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59909566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5991e42f35eeSHong Zhang       }
5992a6b2eed2SHong Zhang     }
59939566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5994a6b2eed2SHong Zhang   }
599587025532SHong Zhang   /* recvs and sends of a-array are completed */
59969566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59979566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
5998a6b2eed2SHong Zhang 
599987025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
6000a6b2eed2SHong Zhang     /* put together the new matrix */
60019566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
6002a6b2eed2SHong Zhang 
6003a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
6004a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
600587025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
6006e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
6007e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
600887025532SHong Zhang     b_oth->nonew   = 0;
6009a6b2eed2SHong Zhang 
60109566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
6011b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
60129566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
60139566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
6014dea91ad1SHong Zhang     } else {
6015b7f45c76SHong Zhang       *startsj_s = sstartsj;
60161d79065fSBarry Smith       *startsj_r = rstartsj;
601787025532SHong Zhang       *bufa_ptr  = bufa;
601887025532SHong Zhang     }
6019fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
60209566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
6021dea91ad1SHong Zhang   }
60223515ee7fSJunchao Zhang 
60239566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
60249566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
60259566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
60263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6027429d309bSHong Zhang }
6028ccd8e176SBarry Smith 
6029cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
6030cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
6031ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
60329779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
6033a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
6034191b95cbSRichard Tran Mills #endif
6035ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
6036cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
60375d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6038cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
60395d7652ecSHong Zhang #endif
6040d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
6041d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
6042d24d4204SJose E. Roman #endif
604363c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
604463c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
604563c07aadSStefano Zampini #endif
60463338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
60473338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
60483338378cSStefano Zampini #endif
6049d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6050d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
6051d5e393b6SSuyash Tandon #endif
60523d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
60533d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
60543d0639e7SStefano Zampini #endif
6055d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
60564222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
60574222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
605817667f90SBarry Smith 
6059fc4dec0aSBarry Smith /*
6060fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
6061fc4dec0aSBarry Smith 
6062fc4dec0aSBarry Smith                n                       p                          p
60632da392ccSBarry Smith         [             ]       [             ]         [                 ]
60642da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
60652da392ccSBarry Smith         [             ]       [             ]         [                 ]
6066fc4dec0aSBarry Smith 
6067fc4dec0aSBarry Smith */
6068d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6069d71ae5a4SJacob Faibussowitsch {
6070fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6071fc4dec0aSBarry Smith 
6072fc4dec0aSBarry Smith   PetscFunctionBegin;
60739566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60749566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
60759566063dSJacob Faibussowitsch   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_DEFAULT, &Ct));
60769566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60779566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60787fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60799566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60809566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6082fc4dec0aSBarry Smith }
6083fc4dec0aSBarry Smith 
6084d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6085d71ae5a4SJacob Faibussowitsch {
60866718818eSStefano Zampini   PetscBool cisdense;
6087fc4dec0aSBarry Smith 
6088fc4dec0aSBarry Smith   PetscFunctionBegin;
608908401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60909566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60919566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6092d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
609348a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60949566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6095f75ecaa4SHong Zhang 
60964222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
60973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6098fc4dec0aSBarry Smith }
6099fc4dec0aSBarry Smith 
6100d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6101d71ae5a4SJacob Faibussowitsch {
61024222ddf1SHong Zhang   Mat_Product *product = C->product;
61034222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6104fc4dec0aSBarry Smith 
6105fc4dec0aSBarry Smith   PetscFunctionBegin;
610620f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
610720f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
61084222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
61094222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
61103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6111fc4dec0aSBarry Smith }
6112fc4dec0aSBarry Smith 
6113d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6114d71ae5a4SJacob Faibussowitsch {
61154222ddf1SHong Zhang   Mat_Product *product = C->product;
61164222ddf1SHong Zhang 
61174222ddf1SHong Zhang   PetscFunctionBegin;
611848a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
61193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
61204222ddf1SHong Zhang }
6121394ed5ebSJunchao Zhang 
612227430b45SBarry Smith /*
612327430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6124394ed5ebSJunchao Zhang 
6125394ed5ebSJunchao Zhang   Input Parameters:
6126394ed5ebSJunchao Zhang 
6127651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6128651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6129394ed5ebSJunchao Zhang 
6130158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6131394ed5ebSJunchao Zhang 
6132394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6133394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6134394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6135394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6136394ed5ebSJunchao Zhang 
6137394ed5ebSJunchao Zhang     Similar for Set2.
6138394ed5ebSJunchao Zhang 
6139394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6140394ed5ebSJunchao Zhang 
6141158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6142394ed5ebSJunchao Zhang 
6143394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6144394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6145394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6146394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6147394ed5ebSJunchao Zhang */
6148d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6149d71ae5a4SJacob Faibussowitsch {
6150394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6151394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6152394ed5ebSJunchao Zhang 
6153394ed5ebSJunchao Zhang   PetscFunctionBegin;
61549566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6155394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6156394ed5ebSJunchao Zhang   i[0]        = 0;
6157394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6158394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6159394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6160394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6161394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6162394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6163394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6164394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6165394ed5ebSJunchao Zhang         imap1[t1] = t;
6166394ed5ebSJunchao Zhang         imap2[t2] = t;
6167394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6168394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61699371c9d4SSatish Balay         t1++;
61709371c9d4SSatish Balay         t2++;
61719371c9d4SSatish Balay         t++;
6172394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6173394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6174394ed5ebSJunchao Zhang         imap1[t1] = t;
6175394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61769371c9d4SSatish Balay         t1++;
61779371c9d4SSatish Balay         t++;
6178394ed5ebSJunchao Zhang       } else {
6179394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6180394ed5ebSJunchao Zhang         imap2[t2] = t;
6181394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61829371c9d4SSatish Balay         t2++;
61839371c9d4SSatish Balay         t++;
6184394ed5ebSJunchao Zhang       }
6185394ed5ebSJunchao Zhang     }
6186394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6187394ed5ebSJunchao Zhang     while (b1 < e1) {
6188394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6189394ed5ebSJunchao Zhang       imap1[t1] = t;
6190394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61919371c9d4SSatish Balay       t1++;
61929371c9d4SSatish Balay       t++;
6193394ed5ebSJunchao Zhang     }
6194394ed5ebSJunchao Zhang     while (b2 < e2) {
6195394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6196394ed5ebSJunchao Zhang       imap2[t2] = t;
6197394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
61989371c9d4SSatish Balay       t2++;
61999371c9d4SSatish Balay       t++;
6200394ed5ebSJunchao Zhang     }
6201394ed5ebSJunchao Zhang     i[r + 1] = t;
6202394ed5ebSJunchao Zhang   }
62033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6204394ed5ebSJunchao Zhang }
6205394ed5ebSJunchao Zhang 
620627430b45SBarry Smith /*
620727430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6208394ed5ebSJunchao Zhang 
6209394ed5ebSJunchao Zhang   Input Parameters:
6210394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6211394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6212394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6213394ed5ebSJunchao Zhang 
6214394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6215394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6216394ed5ebSJunchao Zhang 
6217394ed5ebSJunchao Zhang   Output Parameters:
6218394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6219394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6220394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6221394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6222394ed5ebSJunchao Zhang 
6223394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6224158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6225158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6226394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6227394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6228394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6229394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6230394ed5ebSJunchao Zhang 
6231394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6232394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6233394ed5ebSJunchao Zhang 
6234394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6235394ed5ebSJunchao Zhang 
6236158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6237394ed5ebSJunchao Zhang */
6238d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6239d71ae5a4SJacob Faibussowitsch {
6240394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6241394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6242394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6243394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6244394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6245394ed5ebSJunchao Zhang 
6246394ed5ebSJunchao Zhang   PetscFunctionBegin;
62479566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
62489566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6249394ed5ebSJunchao Zhang   m = rend - rstart;
6250394ed5ebSJunchao Zhang 
6251651b1cf9SStefano Zampini   /* Skip negative rows */
6252651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
62539371c9d4SSatish Balay     if (i[k] >= 0) break;
6254394ed5ebSJunchao Zhang 
6255394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6256394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6257394ed5ebSJunchao Zhang   */
6258394ed5ebSJunchao Zhang   while (k < n) {
6259394ed5ebSJunchao Zhang     row = i[k];
6260394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
62619371c9d4SSatish Balay     for (s = k; s < n; s++)
62629371c9d4SSatish Balay       if (i[s] != row) break;
6263651b1cf9SStefano Zampini 
6264651b1cf9SStefano Zampini     /* Shift diag columns to range of [-PETSC_MAX_INT, -1] */
6265394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
6266651b1cf9SStefano Zampini       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_MAX_INT;
626754c59aa7SJacob Faibussowitsch       else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]);
6268394ed5ebSJunchao Zhang     }
62699566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6270158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6271394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6272394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6273394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
6274394ed5ebSJunchao Zhang 
6275394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6276394ed5ebSJunchao Zhang     Atot += mid - k;
6277394ed5ebSJunchao Zhang     Btot += s - mid;
6278394ed5ebSJunchao Zhang 
6279651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6280394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6281394ed5ebSJunchao Zhang       col = j[p];
62829371c9d4SSatish Balay       do {
6283651b1cf9SStefano Zampini         j[p] += PETSC_MAX_INT; /* Revert the modified diagonal indices */
62849371c9d4SSatish Balay         p++;
6285651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6286394ed5ebSJunchao Zhang       Annz++;
6287394ed5ebSJunchao Zhang     }
6288394ed5ebSJunchao Zhang 
6289651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6290394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6291394ed5ebSJunchao Zhang       col = j[p];
6292d71ae5a4SJacob Faibussowitsch       do {
6293d71ae5a4SJacob Faibussowitsch         p++;
6294d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6295394ed5ebSJunchao Zhang       Bnnz++;
6296394ed5ebSJunchao Zhang     }
6297394ed5ebSJunchao Zhang     k = s;
6298394ed5ebSJunchao Zhang   }
6299394ed5ebSJunchao Zhang 
6300394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6301158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6302158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6303158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6304158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6305394ed5ebSJunchao Zhang 
63066aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6307394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6308394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6309394ed5ebSJunchao Zhang     k   = rowBegin[r];
6310394ed5ebSJunchao Zhang     mid = rowMid[r];
6311394ed5ebSJunchao Zhang     s   = rowEnd[r];
63128e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
63138e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6314394ed5ebSJunchao Zhang     Atot += mid - k;
6315394ed5ebSJunchao Zhang     Btot += s - mid;
6316394ed5ebSJunchao Zhang 
6317394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6318394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6319394ed5ebSJunchao Zhang       col = j[p];
6320394ed5ebSJunchao Zhang       q   = p;
6321d71ae5a4SJacob Faibussowitsch       do {
6322d71ae5a4SJacob Faibussowitsch         p++;
6323d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6324394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6325394ed5ebSJunchao Zhang       Annz++;
6326394ed5ebSJunchao Zhang     }
6327394ed5ebSJunchao Zhang 
6328394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6329394ed5ebSJunchao Zhang       col = j[p];
6330394ed5ebSJunchao Zhang       q   = p;
6331d71ae5a4SJacob Faibussowitsch       do {
6332d71ae5a4SJacob Faibussowitsch         p++;
6333d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6334394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6335394ed5ebSJunchao Zhang       Bnnz++;
6336394ed5ebSJunchao Zhang     }
6337394ed5ebSJunchao Zhang   }
6338394ed5ebSJunchao Zhang   /* Output */
6339394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6340394ed5ebSJunchao Zhang   *Annz_  = Annz;
6341394ed5ebSJunchao Zhang   *Atot_  = Atot;
6342394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6343394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6344394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6345394ed5ebSJunchao Zhang   *Btot_  = Btot;
6346394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
63473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6348394ed5ebSJunchao Zhang }
6349394ed5ebSJunchao Zhang 
635027430b45SBarry Smith /*
635127430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6352158ec288SJunchao Zhang 
6353158ec288SJunchao Zhang   Input Parameters:
6354158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6355158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6356158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6357651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6358158ec288SJunchao Zhang 
6359158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6360158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6361158ec288SJunchao Zhang 
6362158ec288SJunchao Zhang   Example:
6363158ec288SJunchao Zhang     nnz1 = 4
6364158ec288SJunchao Zhang     nnz  = 6
6365158ec288SJunchao Zhang     imap = [1,3,4,5]
6366158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6367158ec288SJunchao Zhang    then,
6368158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6369158ec288SJunchao Zhang */
6370d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6371d71ae5a4SJacob Faibussowitsch {
6372158ec288SJunchao Zhang   PetscCount k, p;
6373158ec288SJunchao Zhang 
6374158ec288SJunchao Zhang   PetscFunctionBegin;
6375158ec288SJunchao Zhang   jmap_new[0] = 0;
6376158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6377158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6378158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6379158ec288SJunchao Zhang   }
6380158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6382158ec288SJunchao Zhang }
6383158ec288SJunchao Zhang 
63842c4ab24aSJunchao Zhang static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void *data)
63852c4ab24aSJunchao Zhang {
63862c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)data;
63872c4ab24aSJunchao Zhang 
63882c4ab24aSJunchao Zhang   PetscFunctionBegin;
63892c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63902c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63912c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63922c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63932c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63942c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63952c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63962c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
63972c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
63982c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
63992c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
64002c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
64012c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
64022c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
64032c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
64042c4ab24aSJunchao Zhang }
64052c4ab24aSJunchao Zhang 
6406d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6407d71ae5a4SJacob Faibussowitsch {
6408394ed5ebSJunchao Zhang   MPI_Comm             comm;
6409394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6410394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6411394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6412394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
64132c4ab24aSJunchao Zhang   PetscContainer       container;
64142c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6415394ed5ebSJunchao Zhang 
6416394ed5ebSJunchao Zhang   PetscFunctionBegin;
64179566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
64189566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6419cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6420eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6421cbc6b225SStefano Zampini #else
64229566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6423cbc6b225SStefano Zampini #endif
64249566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6425cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6426cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6427cbc6b225SStefano Zampini 
64289566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
64299566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
64309566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
64319566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
64329566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
64339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
64349566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
64359566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
64369566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6437394ed5ebSJunchao Zhang 
64386aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6439394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6440394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6441e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6442e8729f6fSJunchao Zhang 
6443e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6444394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6445394ed5ebSJunchao Zhang 
6446394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6447394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6448394ed5ebSJunchao Zhang      will have positive row indices.
6449394ed5ebSJunchao Zhang   */
6450394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
6451394ed5ebSJunchao Zhang     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_MIN_INT;                /* e.g., -2^31, minimal to move them ahead */
6452394ed5ebSJunchao Zhang     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_MAX_INT; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_MAX_INT, -1] */
6453f7d195e4SLawrence Mitchell     else {
6454f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
6455f7d195e4SLawrence Mitchell       if (mpiaij->donotstash) i1[k] = PETSC_MIN_INT; /* Ignore offproc entries as if they had negative indices */
6456f7d195e4SLawrence Mitchell     }
6457394ed5ebSJunchao Zhang   }
6458394ed5ebSJunchao Zhang 
6459da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
64609566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6461651b1cf9SStefano Zampini 
6462651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6463651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
64649371c9d4SSatish Balay     if (i1[k] > PETSC_MIN_INT) break;
6465651b1cf9SStefano Zampini   PetscInt i1start = k;
6466651b1cf9SStefano Zampini 
64679566063dSJacob Faibussowitsch   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_MAX_INT, &rem)); /* rem is upper bound of the last local row */
6468394ed5ebSJunchao Zhang   for (; k < rem; k++) i1[k] += PETSC_MAX_INT;                                    /* Revert row indices of local rows*/
6469394ed5ebSJunchao Zhang 
6470394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6471394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6472394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6473394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6474394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6475394ed5ebSJunchao Zhang   const PetscInt *ranges;
6476394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6477394ed5ebSJunchao Zhang 
64789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6480394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6481394ed5ebSJunchao Zhang     PetscMPIInt owner;
6482394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6483cbc6b225SStefano Zampini 
6484394ed5ebSJunchao Zhang     /* Locate a row range */
6485394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64869566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6487394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6488394ed5ebSJunchao Zhang 
6489394ed5ebSJunchao Zhang     /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */
64909566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6491394ed5ebSJunchao Zhang 
6492394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6493394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6494394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6495394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6496394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6497cbc6b225SStefano Zampini 
64989566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
64999566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
65009566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1));
65019566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sendto, nentries2));
6502394ed5ebSJunchao Zhang       sendto   = sendto2;
6503394ed5ebSJunchao Zhang       nentries = nentries2;
6504394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6505394ed5ebSJunchao Zhang     }
6506394ed5ebSJunchao Zhang     sendto[nsend]   = owner;
6507394ed5ebSJunchao Zhang     nentries[nsend] = p - k;
65089566063dSJacob Faibussowitsch     PetscCall(PetscCountCast(p - k, &nentries[nsend]));
6509394ed5ebSJunchao Zhang     nsend++;
6510394ed5ebSJunchao Zhang     k = p;
6511394ed5ebSJunchao Zhang   }
6512394ed5ebSJunchao Zhang 
6513394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6514394ed5ebSJunchao Zhang   PetscSF      sf1;
6515394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6516394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6517394ed5ebSJunchao Zhang   PetscInt    *offsets;
6518394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6519394ed5ebSJunchao Zhang 
65209566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
65219566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
65229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6523394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6524394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6525394ed5ebSJunchao Zhang     iremote[k].index = 0;
6526394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
652754c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6528394ed5ebSJunchao Zhang   }
65299566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
65309566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
65319566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
65329566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6533e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6534394ed5ebSJunchao Zhang 
6535394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6536394ed5ebSJunchao Zhang   PetscSF sf2;
6537394ed5ebSJunchao Zhang   nroots  = nroots2;
6538394ed5ebSJunchao Zhang   nleaves = nleaves2;
65399566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
65409566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
65419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6542394ed5ebSJunchao Zhang   p = 0;
6543394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
654454c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6545394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6546394ed5ebSJunchao Zhang       iremote[p].rank  = sendto[k];
6547394ed5ebSJunchao Zhang       iremote[p].index = offsets[k] + q;
6548394ed5ebSJunchao Zhang     }
6549394ed5ebSJunchao Zhang   }
65509566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6551394ed5ebSJunchao Zhang 
6552394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6553394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6554394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
65559566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6556834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6557834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6558834dcf29SHansol Suh   PetscInt *i1prem = i1 ? i1 + rem : NULL; /* silence ubsan warnings about pointer arithmetic on null pointer */
6559834dcf29SHansol Suh   PetscInt *j1prem = j1 ? j1 + rem : NULL;
6560834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6561834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6562834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6563834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6564394ed5ebSJunchao Zhang 
65659566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65669566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6567394ed5ebSJunchao Zhang 
6568394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6569394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65709566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6571394ed5ebSJunchao Zhang 
6572651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6573651b1cf9SStefano Zampini   PetscCount *Cperm1;
6574834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6575834dcf29SHansol Suh   PetscCount *perm1prem = perm1 ? perm1 + rem : NULL;
6576651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6577834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6578651b1cf9SStefano Zampini 
6579651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6580651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6581651b1cf9SStefano Zampini   PetscBool   hypre;
6582651b1cf9SStefano Zampini   const char *name;
6583651b1cf9SStefano Zampini   PetscCall(PetscObjectGetName((PetscObject)mat, &name));
6584651b1cf9SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", name, &hypre));
6585651b1cf9SStefano Zampini   if (hypre) {
6586651b1cf9SStefano Zampini     PetscInt *minj;
6587651b1cf9SStefano Zampini     PetscBT   hasdiag;
6588651b1cf9SStefano Zampini 
6589651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6590651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
6591651b1cf9SStefano Zampini     for (k = 0; k < m; k++) minj[k] = PETSC_MAX_INT;
6592651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6593651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6594651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6595651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6596651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6597651b1cf9SStefano Zampini     }
6598651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6599651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6600651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6601651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6602651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6603651b1cf9SStefano Zampini     }
6604651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6605651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6606651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6607651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6608651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6609651b1cf9SStefano Zampini     }
6610651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6611651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6612651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6613651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6614651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6615651b1cf9SStefano Zampini     }
6616651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6617651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6618651b1cf9SStefano Zampini   }
6619651b1cf9SStefano Zampini 
6620651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6621651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6622651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6623651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6624394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6625394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6626394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6627394ed5ebSJunchao Zhang 
6628651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
66299566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6630651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
66319566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6632394ed5ebSJunchao Zhang 
6633394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6634394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6635394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6636394ed5ebSJunchao Zhang 
66379566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
66389566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
66399566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
66409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6641394ed5ebSJunchao Zhang 
6642394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6643158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6644158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6645158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6646158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6647394ed5ebSJunchao Zhang 
66489566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
66499566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6650158ec288SJunchao Zhang 
6651158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6652158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6653158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6654158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6655158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6656158ec288SJunchao Zhang 
6657158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6658158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6659158ec288SJunchao Zhang 
6660158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6661158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6662158ec288SJunchao Zhang 
6663158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6664158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6665158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6666158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
66679566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66689566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6669e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66709566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6671394ed5ebSJunchao Zhang 
6672158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6673158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6674158ec288SJunchao Zhang 
6675394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6676394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6677394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66789566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66799566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66809566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6681394ed5ebSJunchao Zhang     Aj = Aj_new;
6682394ed5ebSJunchao Zhang   }
6683394ed5ebSJunchao Zhang 
6684394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6685394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66869566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66879566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66889566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6689394ed5ebSJunchao Zhang     Bj = Bj_new;
6690394ed5ebSJunchao Zhang   }
6691394ed5ebSJunchao Zhang 
6692cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6693394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6694cbc6b225SStefano Zampini   MatType          rtype;
6695394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6696cf8ba265SJunchao Zhang   PetscObjectState state;
66979566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66989566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6699394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
67009371c9d4SSatish Balay   if (cstart) {
67019371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
67029371c9d4SSatish Balay   }
6703c508b908SBarry Smith 
67049566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6705c508b908SBarry Smith 
6706c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6707c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
67089566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
67090da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6710c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6711c508b908SBarry Smith 
6712c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6713c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
67149566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
67150da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6716c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6717c508b908SBarry Smith 
67189566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
67195bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6720cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6721cf8ba265SJunchao Zhang   PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6722cbc6b225SStefano Zampini 
6723394ed5ebSJunchao Zhang   a               = (Mat_SeqAIJ *)mpiaij->A->data;
6724394ed5ebSJunchao Zhang   b               = (Mat_SeqAIJ *)mpiaij->B->data;
6725394ed5ebSJunchao Zhang   a->singlemalloc = b->singlemalloc = PETSC_FALSE; /* Let newmat own Ai,Aj,Aa,Bi,Bj,Ba */
6726394ed5ebSJunchao Zhang   a->free_a = b->free_a = PETSC_TRUE;
6727394ed5ebSJunchao Zhang   a->free_ij = b->free_ij = PETSC_TRUE;
6728394ed5ebSJunchao Zhang 
6729cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
67309566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
67319566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
67329566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
67339566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6734cbc6b225SStefano Zampini 
67352c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
67362c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
67372c4ab24aSJunchao Zhang   coo->n       = coo_n;
67382c4ab24aSJunchao Zhang   coo->sf      = sf2;
67392c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
67402c4ab24aSJunchao Zhang   coo->recvlen = nroots;
67412c4ab24aSJunchao Zhang   coo->Annz    = Annz;
67422c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
67432c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
67442c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
67452c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
67462c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
67472c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
67482c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
67492c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
67502c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
67512c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
67522c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
67532c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
67542c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
67552c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
67562c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
67572c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
67582c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
67592c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
67602c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
67612c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
67622c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
67632c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
67642c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetUserDestroy(container, MatCOOStructDestroy_MPIAIJ));
67652c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67662c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6768394ed5ebSJunchao Zhang }
6769394ed5ebSJunchao Zhang 
6770d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6771d71ae5a4SJacob Faibussowitsch {
6772394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6773394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6774394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67752c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67762c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67772c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67782c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67792c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67802c4ab24aSJunchao Zhang   PetscContainer       container;
67812c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6782394ed5ebSJunchao Zhang 
6783394ed5ebSJunchao Zhang   PetscFunctionBegin;
67842c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67852c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67862c4ab24aSJunchao Zhang   PetscCall(PetscContainerGetPointer(container, (void **)&coo));
67872c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67882c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67892c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67902c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67912c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67922c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67932c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67942c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67952c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67962c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67972c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67982c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67992c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
68002c4ab24aSJunchao Zhang 
68019566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
68029566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6803394ed5ebSJunchao Zhang 
6804394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
68052c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6806394ed5ebSJunchao Zhang 
6807394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
68082c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6809394ed5ebSJunchao Zhang   /* Add local entries to A and B */
68102c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6811da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6812158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6813158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6814394ed5ebSJunchao Zhang   }
68152c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6816158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6817158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6818158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6819394ed5ebSJunchao Zhang   }
68202c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6821394ed5ebSJunchao Zhang 
6822394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
68232c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6824394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6825394ed5ebSJunchao Zhang   }
68262c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6827394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6828394ed5ebSJunchao Zhang   }
68299566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
68309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
68313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6832394ed5ebSJunchao Zhang }
6833394ed5ebSJunchao Zhang 
6834ccd8e176SBarry Smith /*MC
6835ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6836ccd8e176SBarry Smith 
6837ccd8e176SBarry Smith    Options Database Keys:
683811a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6839ccd8e176SBarry Smith 
6840ccd8e176SBarry Smith    Level: beginner
68410cd7f59aSBarry Smith 
68420cd7f59aSBarry Smith    Notes:
68432ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
68440cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
68450cd7f59aSBarry Smith     in the matrix
68460cd7f59aSBarry Smith 
684711a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
684811a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6849ccd8e176SBarry Smith 
68501cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6851ccd8e176SBarry Smith M*/
6852d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6853d71ae5a4SJacob Faibussowitsch {
6854ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6855ccd8e176SBarry Smith   PetscMPIInt size;
6856ccd8e176SBarry Smith 
6857ccd8e176SBarry Smith   PetscFunctionBegin;
68589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
68592205254eSKarl Rupp 
68604dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6861ccd8e176SBarry Smith   B->data       = (void *)b;
6862aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6863ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6864ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6865ccd8e176SBarry Smith   b->size       = size;
68662205254eSKarl Rupp 
68679566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6868ccd8e176SBarry Smith 
6869ccd8e176SBarry Smith   /* build cache for off array entries formed */
68709566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68712205254eSKarl Rupp 
6872ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6873f4259b30SLisandro Dalcin   b->colmap      = NULL;
6874f4259b30SLisandro Dalcin   b->garray      = NULL;
6875ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6876ccd8e176SBarry Smith 
6877ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68780298fd71SBarry Smith   b->lvec  = NULL;
68790298fd71SBarry Smith   b->Mvctx = NULL;
6880ccd8e176SBarry Smith 
6881ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6882f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6883f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6884ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6885ccd8e176SBarry Smith 
6886f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68870298fd71SBarry Smith   b->spptr = NULL;
6888f60c3dc2SHong Zhang 
68899566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68909566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68929566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68939566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
68959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68989566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68993d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
69009566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
69013d0639e7SStefano Zampini #endif
6902d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6903d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6904d5e393b6SSuyash Tandon #endif
69053d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
69069566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
69073d0639e7SStefano Zampini #endif
69089779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
69099566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6910191b95cbSRichard Tran Mills #endif
69119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
69129566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
69139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
69149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
69155d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
69169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
69175d7652ecSHong Zhang #endif
6918d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
69199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6920d24d4204SJose E. Roman #endif
69219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
69229566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
69233dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
69249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
69259566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
69263dad0653Sstefano_zampini #endif
69279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
69289566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
69299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
69309566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
69319566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
69323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6933ccd8e176SBarry Smith }
693481824310SBarry Smith 
69355d83a8b1SBarry Smith /*@
693611a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
693703bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
693803bfb495SBarry Smith 
6939d083f849SBarry Smith   Collective
694003bfb495SBarry Smith 
694103bfb495SBarry Smith   Input Parameters:
694203bfb495SBarry Smith + comm - MPI communicator
694311a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
694403bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6945d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
69462ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
69472ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
69482ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6949483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
695004ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
695103bfb495SBarry Smith . a    - matrix values
6952483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
69532ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
695403bfb495SBarry Smith - oa   - matrix values
695503bfb495SBarry Smith 
695603bfb495SBarry Smith   Output Parameter:
695703bfb495SBarry Smith . mat - the matrix
695803bfb495SBarry Smith 
695903bfb495SBarry Smith   Level: advanced
696003bfb495SBarry Smith 
696103bfb495SBarry Smith   Notes:
6962f13dfd9eSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user
6963292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
696403bfb495SBarry Smith 
69652ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
696603bfb495SBarry Smith 
69672ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
696803bfb495SBarry Smith 
69697b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69707b55108eSBarry Smith 
6971dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6972dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6973dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6974dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
697511a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6976dca341c0SJed Brown   communication if it is known that only local entries will be set.
697703bfb495SBarry Smith 
69781cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6979db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69802b26979fSBarry Smith @*/
6981d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6982d71ae5a4SJacob Faibussowitsch {
698303bfb495SBarry Smith   Mat_MPIAIJ *maij;
698403bfb495SBarry Smith 
698503bfb495SBarry Smith   PetscFunctionBegin;
698608401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6987aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6988aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69899566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69909566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69919566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
699203bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69932205254eSKarl Rupp 
69948d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
699503bfb495SBarry Smith 
69969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
699803bfb495SBarry Smith 
69999566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
70009566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
700103bfb495SBarry Smith 
70029566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
70039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
70049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
70059566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
70069566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
70073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
700803bfb495SBarry Smith }
700903bfb495SBarry Smith 
70104e84afc0SStefano Zampini typedef struct {
70114e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
70124e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
70134e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
70144e84afc0SStefano Zampini 
70154e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
70164e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
70174e84afc0SStefano Zampini   PetscScalar *bufa;
70184e84afc0SStefano Zampini   Mat          P_oth;
70194e84afc0SStefano Zampini 
70204e84afc0SStefano Zampini   /* may take advantage of merging product->B */
7021ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
70224e84afc0SStefano Zampini 
7023ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
70244e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
70254e84afc0SStefano Zampini      of the temporary storage */
70264e84afc0SStefano Zampini   PetscBool reusesym;
70274e84afc0SStefano Zampini 
70284e84afc0SStefano Zampini   /* support for COO values insertion */
7029ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
7030ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
7031ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
7032ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
7033c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
7034c215019aSStefano Zampini   PetscMemType mtype;
70354e84afc0SStefano Zampini 
70364e84afc0SStefano Zampini   /* customization */
70374e84afc0SStefano Zampini   PetscBool abmerge;
7038abb89eb1SStefano Zampini   PetscBool P_oth_bind;
70394e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
70404e84afc0SStefano Zampini 
7041ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data)
7042d71ae5a4SJacob Faibussowitsch {
70434e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data;
70444e84afc0SStefano Zampini   PetscInt             i;
70454e84afc0SStefano Zampini 
70464e84afc0SStefano Zampini   PetscFunctionBegin;
70479566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
70489566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
70499566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
70509566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
70519566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
70529566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
70539566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
705448a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
70559566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
70569566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
70579566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
70589566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
70599566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
70609566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
70613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70624e84afc0SStefano Zampini }
70634e84afc0SStefano Zampini 
7064fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7065fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7066fff043a9SJunchao Zhang  */
7067d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7068d71ae5a4SJacob Faibussowitsch {
7069c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7070c215019aSStefano Zampini 
7071c215019aSStefano Zampini   PetscFunctionBegin;
70729566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7073c215019aSStefano Zampini   if (f) {
70749566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7075c215019aSStefano Zampini   } else {
7076c215019aSStefano Zampini     const PetscScalar *vv;
7077c215019aSStefano Zampini 
70789566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7079c215019aSStefano Zampini     if (n && idx) {
7080c215019aSStefano Zampini       PetscScalar    *w  = v;
7081c215019aSStefano Zampini       const PetscInt *oi = idx;
7082c215019aSStefano Zampini       PetscInt        j;
7083c215019aSStefano Zampini 
7084c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7085c215019aSStefano Zampini     } else {
70869566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7087c215019aSStefano Zampini     }
70889566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7089c215019aSStefano Zampini   }
70903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7091c215019aSStefano Zampini }
7092c215019aSStefano Zampini 
7093d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7094d71ae5a4SJacob Faibussowitsch {
70954e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70964e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70974e84afc0SStefano Zampini 
70984e84afc0SStefano Zampini   PetscFunctionBegin;
70994e84afc0SStefano Zampini   MatCheckProduct(C, 1);
710028b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
71014e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
71024e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
710348a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
710448a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
71054e84afc0SStefano Zampini   }
71064e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7107abb89eb1SStefano Zampini 
7108abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
710908401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
71109566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7111abb89eb1SStefano Zampini   }
71124e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
71134e84afc0SStefano Zampini     PetscInt noff = mmdata->off[i + 1] - mmdata->off[i];
71144e84afc0SStefano Zampini 
71154e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
71164e84afc0SStefano Zampini     if (noff) {
7117c215019aSStefano Zampini       PetscInt nown = mmdata->own[i + 1] - mmdata->own[i];
7118c215019aSStefano Zampini 
71199566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
71209566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
71214e84afc0SStefano Zampini       n_o += noff;
71224e84afc0SStefano Zampini       n_d += nown;
71234e84afc0SStefano Zampini     } else {
7124c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7125c215019aSStefano Zampini 
71269566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
71274e84afc0SStefano Zampini       n_d += mm->nz;
71284e84afc0SStefano Zampini     }
71294e84afc0SStefano Zampini   }
7130c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
71319566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71329566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
71334e84afc0SStefano Zampini   }
71349566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
71353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
71364e84afc0SStefano Zampini }
71374e84afc0SStefano Zampini 
71384e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
71394e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7140d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7141d71ae5a4SJacob Faibussowitsch {
71424e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7143ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
71444e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
71454e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
71464e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
71474e84afc0SStefano Zampini   IS                     glob      = NULL;
71484e84afc0SStefano Zampini   const char            *prefix;
71494e84afc0SStefano Zampini   char                   pprefix[256];
71504e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
715182a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
715282a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7153ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7154ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7155ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7156ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7157ddea5d60SJunchao Zhang 
71584e84afc0SStefano Zampini   MatProductType ptype;
7159d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
71604e84afc0SStefano Zampini   PetscMPIInt    size;
71614e84afc0SStefano Zampini 
71624e84afc0SStefano Zampini   PetscFunctionBegin;
71634e84afc0SStefano Zampini   MatCheckProduct(C, 1);
716428b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71654e84afc0SStefano Zampini   ptype = product->type;
7166b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7167fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7168fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7169fa046f9fSJunchao Zhang   }
71704e84afc0SStefano Zampini   switch (ptype) {
71714e84afc0SStefano Zampini   case MATPRODUCT_AB:
71724e84afc0SStefano Zampini     A          = product->A;
71734e84afc0SStefano Zampini     P          = product->B;
71744e84afc0SStefano Zampini     m          = A->rmap->n;
71754e84afc0SStefano Zampini     n          = P->cmap->n;
71764e84afc0SStefano Zampini     M          = A->rmap->N;
71774e84afc0SStefano Zampini     N          = P->cmap->N;
7178ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71794e84afc0SStefano Zampini     break;
71804e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71814e84afc0SStefano Zampini     P          = product->A;
71824e84afc0SStefano Zampini     A          = product->B;
71834e84afc0SStefano Zampini     m          = P->cmap->n;
71844e84afc0SStefano Zampini     n          = A->cmap->n;
71854e84afc0SStefano Zampini     M          = P->cmap->N;
71864e84afc0SStefano Zampini     N          = A->cmap->N;
71874e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71884e84afc0SStefano Zampini     break;
71894e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71904e84afc0SStefano Zampini     A          = product->A;
71914e84afc0SStefano Zampini     P          = product->B;
71924e84afc0SStefano Zampini     m          = P->cmap->n;
71934e84afc0SStefano Zampini     n          = P->cmap->n;
71944e84afc0SStefano Zampini     M          = P->cmap->N;
71954e84afc0SStefano Zampini     N          = P->cmap->N;
71964e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71974e84afc0SStefano Zampini     break;
7198d71ae5a4SJacob Faibussowitsch   default:
7199d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
72004e84afc0SStefano Zampini   }
72019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
72024e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
72034e84afc0SStefano Zampini 
72044e84afc0SStefano Zampini   /* defaults */
72054e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
72064e84afc0SStefano Zampini     mp[i]    = NULL;
72074e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
72084e84afc0SStefano Zampini     rmapt[i] = -1;
72094e84afc0SStefano Zampini     cmapt[i] = -1;
72104e84afc0SStefano Zampini     rmapa[i] = NULL;
72114e84afc0SStefano Zampini     cmapa[i] = NULL;
72124e84afc0SStefano Zampini   }
72134e84afc0SStefano Zampini 
72144e84afc0SStefano Zampini   /* customization */
72159566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
72164e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
72174e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
72184e84afc0SStefano Zampini     if (product->api_user) {
7219d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
72209566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72219566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7222d0609cedSBarry Smith       PetscOptionsEnd();
72234e84afc0SStefano Zampini     } else {
7224d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
72259566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
72269566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7227d0609cedSBarry Smith       PetscOptionsEnd();
7228abb89eb1SStefano Zampini     }
7229abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7230abb89eb1SStefano Zampini     if (product->api_user) {
7231d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
72329566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7233d0609cedSBarry Smith       PetscOptionsEnd();
7234abb89eb1SStefano Zampini     } else {
7235d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
72369566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7237d0609cedSBarry Smith       PetscOptionsEnd();
72384e84afc0SStefano Zampini     }
72394e84afc0SStefano Zampini   }
72404e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
72414e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
72429566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
72439566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
72449566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
72459566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
72469566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7247ddea5d60SJunchao Zhang 
7248ddea5d60SJunchao Zhang   cp = 0;
72494e84afc0SStefano Zampini   switch (ptype) {
72504e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
72519566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
72524e84afc0SStefano Zampini 
7253ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7254ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
72554e84afc0SStefano Zampini       /* P is product->B */
72569566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
72579566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
72589566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72599566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72609566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72619566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72629566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72634e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72649566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72659566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72669566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72674e84afc0SStefano Zampini       rmapt[cp] = 1;
72684e84afc0SStefano Zampini       cmapt[cp] = 2;
72694e84afc0SStefano Zampini       cmapa[cp] = globidx;
72704e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72714e84afc0SStefano Zampini       cp++;
7272ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72739566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72749566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72759566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72769566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72779566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72789566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72794e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72809566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72819566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72824e84afc0SStefano Zampini       rmapt[cp] = 1;
72834e84afc0SStefano Zampini       cmapt[cp] = 1;
72844e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72854e84afc0SStefano Zampini       cp++;
72869566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72879566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72889566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72899566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72909566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72919566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72924e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72939566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72949566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72954e84afc0SStefano Zampini       rmapt[cp] = 1;
72964e84afc0SStefano Zampini       cmapt[cp] = 2;
72974e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72984e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72994e84afc0SStefano Zampini       cp++;
73004e84afc0SStefano Zampini     }
7301ddea5d60SJunchao Zhang 
7302ddea5d60SJunchao Zhang     /* A_off * P_other */
73034e84afc0SStefano Zampini     if (mmdata->P_oth) {
73049566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
73059566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7306f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73079566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73089566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73099566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73109566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73119566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73129566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73139566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73144e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73159566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73169566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73174e84afc0SStefano Zampini       rmapt[cp] = 1;
73184e84afc0SStefano Zampini       cmapt[cp] = 2;
73194e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73204e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73214e84afc0SStefano Zampini       cp++;
73224e84afc0SStefano Zampini     }
73234e84afc0SStefano Zampini     break;
7324ddea5d60SJunchao Zhang 
73254e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
73264e84afc0SStefano Zampini     /* A is product->B */
73279566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7328ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
73299566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
73309566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73319566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73329566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73339566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73349566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73354e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73369566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73379566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73389566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73394e84afc0SStefano Zampini       rmapt[cp] = 2;
73404e84afc0SStefano Zampini       rmapa[cp] = globidx;
73414e84afc0SStefano Zampini       cmapt[cp] = 2;
73424e84afc0SStefano Zampini       cmapa[cp] = globidx;
73434e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73444e84afc0SStefano Zampini       cp++;
73454e84afc0SStefano Zampini     } else {
73469566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
73479566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73489566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73499566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73509566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73519566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73524e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73539566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73549566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73559566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
73564e84afc0SStefano Zampini       rmapt[cp] = 1;
73574e84afc0SStefano Zampini       cmapt[cp] = 2;
73584e84afc0SStefano Zampini       cmapa[cp] = globidx;
73594e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73604e84afc0SStefano Zampini       cp++;
73619566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73629566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73639566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73649566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73659566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73669566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73674e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73689566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73699566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73704e84afc0SStefano Zampini       rmapt[cp] = 2;
73714e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73724e84afc0SStefano Zampini       cmapt[cp] = 2;
73734e84afc0SStefano Zampini       cmapa[cp] = globidx;
73744e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73754e84afc0SStefano Zampini       cp++;
73764e84afc0SStefano Zampini     }
73774e84afc0SStefano Zampini     break;
73784e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73799566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73804e84afc0SStefano Zampini     /* P is product->B */
73819566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73829566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73839566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73849566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73859566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73869566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73879566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73884e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73899566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73909566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73919566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73924e84afc0SStefano Zampini     rmapt[cp] = 2;
73934e84afc0SStefano Zampini     rmapa[cp] = globidx;
73944e84afc0SStefano Zampini     cmapt[cp] = 2;
73954e84afc0SStefano Zampini     cmapa[cp] = globidx;
73964e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73974e84afc0SStefano Zampini     cp++;
73984e84afc0SStefano Zampini     if (mmdata->P_oth) {
73999566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
74009566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7401f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
74029566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
74039566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
74049566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
74059566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74069566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74079566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74089566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74094e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74109566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74119566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74124e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
74134e84afc0SStefano Zampini       cp++;
74149566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
74159566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
74169566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
74179566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
74189566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
74199566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
74204e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
74219566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
74229566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
74234e84afc0SStefano Zampini       rmapt[cp] = 2;
74244e84afc0SStefano Zampini       rmapa[cp] = globidx;
74254e84afc0SStefano Zampini       cmapt[cp] = 2;
74264e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
74274e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
74284e84afc0SStefano Zampini       cp++;
74294e84afc0SStefano Zampini     }
74304e84afc0SStefano Zampini     break;
7431d71ae5a4SJacob Faibussowitsch   default:
7432d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
74334e84afc0SStefano Zampini   }
74344e84afc0SStefano Zampini   /* sanity check */
74359371c9d4SSatish Balay   if (size > 1)
74369371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
74374e84afc0SStefano Zampini 
74389566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7439ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7440ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7441ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7442ddea5d60SJunchao Zhang   }
74434e84afc0SStefano Zampini   mmdata->cp             = cp;
74444e84afc0SStefano Zampini   C->product->data       = mmdata;
74454e84afc0SStefano Zampini   C->product->destroy    = MatDestroy_MatMatMPIAIJBACKEND;
74464e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
74474e84afc0SStefano Zampini 
7448c215019aSStefano Zampini   /* memory type */
7449c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
74509566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7451d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
74529566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7453c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7454d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
74553214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7456c215019aSStefano Zampini 
74574e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7458ddea5d60SJunchao Zhang 
7459ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7460ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7461ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7462ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7463ddea5d60SJunchao Zhang   */
74644e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74654e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74664e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7467ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74684e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74694e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74704e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74714e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74724e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74734e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74744e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74754e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7476ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7477ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74784e84afc0SStefano Zampini       }
74794e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74804e84afc0SStefano Zampini   }
7481ddea5d60SJunchao Zhang 
7482ddea5d60SJunchao Zhang   /*
7483ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7484ddea5d60SJunchao Zhang 
7485ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7486ddea5d60SJunchao Zhang 
7487d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7488ddea5d60SJunchao Zhang 
7489ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7490ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7491ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7492ddea5d60SJunchao Zhang 
7493ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7494da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7495ddea5d60SJunchao Zhang   */
74969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74979566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7498ddea5d60SJunchao Zhang 
7499ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7500ddea5d60SJunchao Zhang   if (hasoffproc) {
75014e84afc0SStefano Zampini     PetscSF  msf;
75024e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
75034e84afc0SStefano Zampini 
75049566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
75059566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
75069566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7507ddea5d60SJunchao Zhang 
75084e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
75094e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
75104e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
75114e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7512ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
75134e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
75144e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
75154e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
75164e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
75174e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
75184e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
75194e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
75204e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
75214e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
75224e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
75234e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
75244e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
75254e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7526ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
75274e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
75284e84afc0SStefano Zampini               *coi++    = gr;
75294e84afc0SStefano Zampini               *idxoff++ = j;
75304e84afc0SStefano Zampini             }
75314e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
75324e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
75334e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75344e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
75354e84afc0SStefano Zampini             } else { /* offdiag */
75364e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75374e84afc0SStefano Zampini             }
75384e84afc0SStefano Zampini             ncoo_o += nz;
7539ddea5d60SJunchao Zhang           } else { /* this is a local row */
75404e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
75414e84afc0SStefano Zampini           }
75424e84afc0SStefano Zampini         }
75434e84afc0SStefano Zampini       }
75444e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
75454e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
75464e84afc0SStefano Zampini     }
75474e84afc0SStefano Zampini 
75489566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75499566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, ncoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
75509566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
75519566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
75524e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
75539566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
75549566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
75559566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
75569566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75579566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
75589566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7559ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75609566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75614e84afc0SStefano Zampini     coo_i = coo_i2;
75624e84afc0SStefano Zampini     coo_j = coo_j2;
75634e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75644e84afc0SStefano Zampini     ncoo = ncoo_d;
75659566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7566c215019aSStefano Zampini 
75679566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75689566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75699566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75704e84afc0SStefano Zampini   }
7571c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75724e84afc0SStefano Zampini 
7573ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75744e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75754e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75764e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75774e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75784e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75794e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75804e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75814e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75824e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75834e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75844e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75854e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75864e84afc0SStefano Zampini 
75874e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7588ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7589ddea5d60SJunchao Zhang       /* fill coo_i */
75904e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75914e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75924e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75934e84afc0SStefano Zampini       }
7594ddea5d60SJunchao Zhang       /* fill coo_j */
7595ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75969566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7597ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7598ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7599ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
76004e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
76014e84afc0SStefano Zampini       }
76024e84afc0SStefano Zampini       ncoo_d += mm->nz;
7603ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
76044e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
76054e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
76064e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
76074e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7608ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
76094e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7610ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
76114e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
76124e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
76134e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7614ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
76154e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
76164e84afc0SStefano Zampini           }
76174e84afc0SStefano Zampini           ncoo_d += nz;
76184e84afc0SStefano Zampini         }
76194e84afc0SStefano Zampini       }
76204e84afc0SStefano Zampini     }
76214e84afc0SStefano Zampini   }
762248a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
76239566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
762448a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
76259566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7626ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
76279566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
76284e84afc0SStefano Zampini 
76294e84afc0SStefano Zampini   /* preallocate with COO data */
76309566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
76319566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
76323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
76334e84afc0SStefano Zampini }
76344e84afc0SStefano Zampini 
7635d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7636d71ae5a4SJacob Faibussowitsch {
76374e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76384e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76394e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7640abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76414e84afc0SStefano Zampini #else
76424e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76434e84afc0SStefano Zampini #endif
76444e84afc0SStefano Zampini 
76454e84afc0SStefano Zampini   PetscFunctionBegin;
76464e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76474e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
764848a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
764965e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7650abb89eb1SStefano Zampini     switch (product->type) {
7651abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7652abb89eb1SStefano Zampini       if (product->api_user) {
7653d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76549566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7655d0609cedSBarry Smith         PetscOptionsEnd();
7656abb89eb1SStefano Zampini       } else {
7657d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76589566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7659d0609cedSBarry Smith         PetscOptionsEnd();
7660abb89eb1SStefano Zampini       }
7661abb89eb1SStefano Zampini       break;
7662abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7663abb89eb1SStefano Zampini       if (product->api_user) {
7664d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76659566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7666d0609cedSBarry Smith         PetscOptionsEnd();
7667abb89eb1SStefano Zampini       } else {
7668d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76699566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7670d0609cedSBarry Smith         PetscOptionsEnd();
7671abb89eb1SStefano Zampini       }
7672abb89eb1SStefano Zampini       break;
7673abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7674abb89eb1SStefano Zampini       if (product->api_user) {
7675d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76769566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7677d0609cedSBarry Smith         PetscOptionsEnd();
7678abb89eb1SStefano Zampini       } else {
7679d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76809566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7681d0609cedSBarry Smith         PetscOptionsEnd();
7682abb89eb1SStefano Zampini       }
7683abb89eb1SStefano Zampini       break;
7684d71ae5a4SJacob Faibussowitsch     default:
7685d71ae5a4SJacob Faibussowitsch       break;
7686abb89eb1SStefano Zampini     }
7687abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7688abb89eb1SStefano Zampini   }
76894e84afc0SStefano Zampini #endif
76904e84afc0SStefano Zampini   if (match) {
76914e84afc0SStefano Zampini     switch (product->type) {
76924e84afc0SStefano Zampini     case MATPRODUCT_AB:
76934e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7694d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7695d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7696d71ae5a4SJacob Faibussowitsch       break;
7697d71ae5a4SJacob Faibussowitsch     default:
7698d71ae5a4SJacob Faibussowitsch       break;
76994e84afc0SStefano Zampini     }
77004e84afc0SStefano Zampini   }
77014e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
77029566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
77033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
770481824310SBarry Smith }
770598921bdaSJacob Faibussowitsch 
770698921bdaSJacob Faibussowitsch /*
770772833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
770872833a62Smarkadams4 
770972833a62Smarkadams4    n - the number of block indices in cc[]
771072833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
771172833a62Smarkadams4 */
7712d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7713d71ae5a4SJacob Faibussowitsch {
771472833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
771572833a62Smarkadams4   const PetscInt *idx;
771672833a62Smarkadams4 
771772833a62Smarkadams4   PetscFunctionBegin;
771872833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
771972833a62Smarkadams4   if (nidx) {
772072833a62Smarkadams4     cnt     = 0;
772172833a62Smarkadams4     cc[cnt] = idx[0] / bs;
772272833a62Smarkadams4     for (j = 1; j < nidx; j++) {
772372833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
772472833a62Smarkadams4     }
772572833a62Smarkadams4   }
772672833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
772772833a62Smarkadams4   *n = cnt + 1;
77283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
772972833a62Smarkadams4 }
773072833a62Smarkadams4 
773172833a62Smarkadams4 /*
773272833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
773372833a62Smarkadams4 
773472833a62Smarkadams4     ncollapsed - the number of block indices
773572833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
773672833a62Smarkadams4 */
7737d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7738d71ae5a4SJacob Faibussowitsch {
773972833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
774072833a62Smarkadams4 
774172833a62Smarkadams4   PetscFunctionBegin;
774272833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
774372833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
774472833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
774572833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77469371c9d4SSatish Balay     cprevtmp = cprev;
77479371c9d4SSatish Balay     cprev    = merged;
77489371c9d4SSatish Balay     merged   = cprevtmp;
774972833a62Smarkadams4   }
775072833a62Smarkadams4   *ncollapsed = nprev;
775172833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
775372833a62Smarkadams4 }
775472833a62Smarkadams4 
77552d776b49SBarry Smith /*
775672833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
775772833a62Smarkadams4 
775872833a62Smarkadams4  Input Parameter:
775972833a62Smarkadams4  . Amat - matrix
776072833a62Smarkadams4  - symmetrize - make the result symmetric
776172833a62Smarkadams4  + scale - scale with diagonal
776272833a62Smarkadams4 
776372833a62Smarkadams4  Output Parameter:
776472833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
776572833a62Smarkadams4 
776672833a62Smarkadams4 */
7767e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7768d71ae5a4SJacob Faibussowitsch {
776972833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
777072833a62Smarkadams4   MPI_Comm  comm;
777172833a62Smarkadams4   Mat       Gmat;
777272833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
777372833a62Smarkadams4   Mat       a, b, c;
777472833a62Smarkadams4   MatType   jtype;
777572833a62Smarkadams4 
777672833a62Smarkadams4   PetscFunctionBegin;
777772833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
777872833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
777972833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
778072833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
778172833a62Smarkadams4   nloc = (Iend - Istart) / bs;
778272833a62Smarkadams4 
778372833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
778472833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
778572833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
778672833a62Smarkadams4 
778772833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
778872833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
778972833a62Smarkadams4      implementation */
779072833a62Smarkadams4   if (bs > 1) {
779172833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
779272833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
779372833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
779472833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
779572833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
779672833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
779772833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77982cf69117Smarkadams4       MatScalar *aa, val, *AA;
77992cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
78009371c9d4SSatish Balay       if (isseqaij) {
78019371c9d4SSatish Balay         a = Amat;
78029371c9d4SSatish Balay         b = NULL;
78039371c9d4SSatish Balay       } else {
780472833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
78059371c9d4SSatish Balay         a             = d->A;
78069371c9d4SSatish Balay         b             = d->B;
780772833a62Smarkadams4       }
780872833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
780972833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
781072833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
78112cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
781259ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
781359ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
781459ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
781559ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
781659ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
781772833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
781859ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
781959ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
782059ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
782159ee9f9fSPierre Jolivet             else {
782259ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
782359ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
782459ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
782572833a62Smarkadams4               }
782659ee9f9fSPierre Jolivet             }
782759ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
782859ee9f9fSPierre Jolivet           }
782959ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
783072833a62Smarkadams4           if (!ok) {
783172833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
783259ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
783372833a62Smarkadams4             goto old_bs;
783472833a62Smarkadams4           }
783572833a62Smarkadams4         }
783672833a62Smarkadams4       }
783772833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
783872833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
783972833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78402cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
784172833a62Smarkadams4       // diag
784272833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
784372833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
784472833a62Smarkadams4         ai               = aseq->i;
784572833a62Smarkadams4         n                = ai[brow + 1] - ai[brow];
784672833a62Smarkadams4         aj               = aseq->j + ai[brow];
784772833a62Smarkadams4         for (int k = 0; k < n; k += bs) {        // block columns
784872833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
784972833a62Smarkadams4           val        = 0;
7850e02fb3cdSMark Adams           if (index_size == 0) {
785172833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
785272833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
785372833a62Smarkadams4               for (int jj = 0; jj < bs; jj++) {         // columns in block
785472833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
785572833a62Smarkadams4               }
785672833a62Smarkadams4             }
7857e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7858e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7859e02fb3cdSMark Adams               int ii = index[iii];
7860e02fb3cdSMark Adams               aa     = aseq->a + ai[brow + ii] + k;
7861e02fb3cdSMark Adams               for (int jjj = 0; jjj < index_size; jjj++) { // columns in block
7862e02fb3cdSMark Adams                 int jj = index[jjj];
7863cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7864e02fb3cdSMark Adams               }
7865e02fb3cdSMark Adams             }
7866e02fb3cdSMark Adams           }
786759ee9f9fSPierre Jolivet           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
786872833a62Smarkadams4           AA[k / bs] = val;
786972833a62Smarkadams4         }
787072833a62Smarkadams4         grow = Istart / bs + brow / bs;
787166521e1fSMark Adams         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES));
787272833a62Smarkadams4       }
787372833a62Smarkadams4       // off-diag
787472833a62Smarkadams4       if (ismpiaij) {
787572833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
787672833a62Smarkadams4         const PetscScalar *vals;
787772833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
787872833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
787972833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
788072833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
788172833a62Smarkadams4           for (int k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
788259ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
788372833a62Smarkadams4             AA[k / bs] = 0;
788472833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
788572833a62Smarkadams4           }
788672833a62Smarkadams4           nc = ncols / bs;
788772833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7888e02fb3cdSMark Adams           if (index_size == 0) {
788972833a62Smarkadams4             for (int ii = 0; ii < bs; ii++) { // rows in block
789072833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
789172833a62Smarkadams4               for (int k = 0; k < ncols; k += bs) {
789272833a62Smarkadams4                 for (int jj = 0; jj < bs; jj++) { // cols in block
789359ee9f9fSPierre Jolivet                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%d) >= nmax (%d)", (int)(k / bs), (int)nmax);
789472833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
789572833a62Smarkadams4                 }
789672833a62Smarkadams4               }
789772833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
789872833a62Smarkadams4             }
7899e02fb3cdSMark Adams           } else {                                       // use (index,index) value if provided
7900e02fb3cdSMark Adams             for (int iii = 0; iii < index_size; iii++) { // rows in block
7901e02fb3cdSMark Adams               int ii = index[iii];
7902e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
7903e02fb3cdSMark Adams               for (int k = 0; k < ncols; k += bs) {
7904e02fb3cdSMark Adams                 for (int jjj = 0; jjj < index_size; jjj++) { // cols in block
7905e02fb3cdSMark Adams                   int jj = index[jjj];
7906e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7907e02fb3cdSMark Adams                 }
7908e02fb3cdSMark Adams               }
7909e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7910e02fb3cdSMark Adams             }
7911e02fb3cdSMark Adams           }
791272833a62Smarkadams4           grow = Istart / bs + brow / bs;
791366521e1fSMark Adams           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES));
791472833a62Smarkadams4         }
791572833a62Smarkadams4       }
791672833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
791772833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
79182cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
791972833a62Smarkadams4     } else {
792072833a62Smarkadams4       const PetscScalar *vals;
792172833a62Smarkadams4       const PetscInt    *idx;
792272833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
792372833a62Smarkadams4     old_bs:
792472833a62Smarkadams4       /*
792572833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
792672833a62Smarkadams4        */
792772833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
792872833a62Smarkadams4       PetscCall(PetscMalloc2(nloc, &d_nnz, isseqaij ? 0 : nloc, &o_nnz));
792972833a62Smarkadams4       if (isseqaij) {
793072833a62Smarkadams4         PetscInt max_d_nnz;
793172833a62Smarkadams4         /*
793272833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
793372833a62Smarkadams4          */
793472833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
793572833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
793672833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
793748a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
793872833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
793972833a62Smarkadams4       } else if (ismpiaij) {
794072833a62Smarkadams4         Mat             Daij, Oaij;
794172833a62Smarkadams4         const PetscInt *garray;
794272833a62Smarkadams4         PetscInt        max_d_nnz;
794372833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
794472833a62Smarkadams4         /*
794572833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
794672833a62Smarkadams4          */
794772833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
794872833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
794972833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
795048a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
795172833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
795272833a62Smarkadams4         /*
795372833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
795472833a62Smarkadams4          */
795572833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
795672833a62Smarkadams4           o_nnz[jj] = 0;
795772833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
795872833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
795972833a62Smarkadams4             o_nnz[jj] += ncols;
796072833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
796172833a62Smarkadams4           }
796272833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
796372833a62Smarkadams4         }
796472833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
796572833a62Smarkadams4       /* get scalar copy (norms) of matrix */
796672833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
796772833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
796872833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
796972833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
797072833a62Smarkadams4         PetscInt dest_row = Ii / bs;
797172833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
797272833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
797372833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
797472833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
797572833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
797672833a62Smarkadams4         }
797772833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
797872833a62Smarkadams4       }
797972833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
798072833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
798172833a62Smarkadams4     }
798272833a62Smarkadams4   } else {
79832d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79842d776b49SBarry Smith     else {
79852d776b49SBarry Smith       Gmat = Amat;
79862d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79872d776b49SBarry Smith     }
79889371c9d4SSatish Balay     if (isseqaij) {
79899371c9d4SSatish Balay       a = Gmat;
79909371c9d4SSatish Balay       b = NULL;
79919371c9d4SSatish Balay     } else {
799272833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
79939371c9d4SSatish Balay       a             = d->A;
79949371c9d4SSatish Balay       b             = d->B;
799572833a62Smarkadams4     }
79962d776b49SBarry Smith     if (filter >= 0 || scale) {
79972d776b49SBarry Smith       /* take absolute value of each entry */
799872833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
799972833a62Smarkadams4         MatInfo      info;
800072833a62Smarkadams4         PetscScalar *avals;
800172833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
800272833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
800372833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
800472833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
800572833a62Smarkadams4       }
800672833a62Smarkadams4     }
80072d776b49SBarry Smith   }
800872833a62Smarkadams4   if (symmetrize) {
8009b94d7dedSBarry Smith     PetscBool isset, issym;
8010b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
8011b94d7dedSBarry Smith     if (!isset || !issym) {
801272833a62Smarkadams4       Mat matTrans;
801372833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
80141fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
801572833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
801672833a62Smarkadams4     }
801772833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
80182d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
801972833a62Smarkadams4   if (scale) {
802072833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
802172833a62Smarkadams4     Vec diag;
802272833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
802372833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
802472833a62Smarkadams4     PetscCall(VecReciprocal(diag));
802572833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
802672833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
802772833a62Smarkadams4     PetscCall(VecDestroy(&diag));
802872833a62Smarkadams4   }
802972833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80302d776b49SBarry Smith 
80312d776b49SBarry Smith   if (filter >= 0) {
80322ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80332ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80342d776b49SBarry Smith   }
803572833a62Smarkadams4   *a_Gmat = Gmat;
80363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
803772833a62Smarkadams4 }
803872833a62Smarkadams4 
803972833a62Smarkadams4 /*
804098921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
804198921bdaSJacob Faibussowitsch */
804298921bdaSJacob Faibussowitsch 
804398921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80449566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80459566063dSJacob Faibussowitsch #undef PetscCall
80469371c9d4SSatish Balay #define PetscCall(...) \
80479371c9d4SSatish Balay   do { \
80485f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
804998921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
805098921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
805198921bdaSJacob Faibussowitsch       return; \
805298921bdaSJacob Faibussowitsch     } \
805398921bdaSJacob Faibussowitsch   } while (0)
805498921bdaSJacob Faibussowitsch 
805598921bdaSJacob Faibussowitsch #undef SETERRQ
80569371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80579371c9d4SSatish Balay   do { \
805898921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
805998921bdaSJacob Faibussowitsch     return; \
806098921bdaSJacob Faibussowitsch   } while (0)
806198921bdaSJacob Faibussowitsch 
806298921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
806398921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
806498921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
806598921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
806698921bdaSJacob Faibussowitsch #else
806798921bdaSJacob Faibussowitsch #endif
8068d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8069d71ae5a4SJacob Faibussowitsch {
807098921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
807198921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
807298921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
807398921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
807498921bdaSJacob Faibussowitsch   PetscScalar value;
807598921bdaSJacob Faibussowitsch 
807698921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
807798921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80785f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
807998921bdaSJacob Faibussowitsch   {
808098921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
808198921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
808298921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
808398921bdaSJacob Faibussowitsch 
808498921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
808598921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
808698921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
808798921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
808898921bdaSJacob Faibussowitsch     MatScalar  *aa;
8089f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
809098921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
809198921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
809298921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
809398921bdaSJacob Faibussowitsch     MatScalar  *ba;
809498921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
809598921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
809698921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
809798921bdaSJacob Faibussowitsch 
809898921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
809998921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
810098921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
810198921bdaSJacob Faibussowitsch 
810298921bdaSJacob Faibussowitsch     PetscFunctionBegin;
81039566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
81049566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
810598921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
810698921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
81076bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
810898921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
810998921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
811098921bdaSJacob Faibussowitsch         lastcol1 = -1;
811198921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
811298921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
811398921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
811498921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
811598921bdaSJacob Faibussowitsch         low1     = 0;
811698921bdaSJacob Faibussowitsch         high1    = nrow1;
811798921bdaSJacob Faibussowitsch         lastcol2 = -1;
811898921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
811998921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
812098921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
812198921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
812298921bdaSJacob Faibussowitsch         low2     = 0;
812398921bdaSJacob Faibussowitsch         high2    = nrow2;
812498921bdaSJacob Faibussowitsch 
812598921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
812698921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
812798921bdaSJacob Faibussowitsch           else value = v[i + j * m];
812898921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
812998921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
813098921bdaSJacob Faibussowitsch             col = in[j] - cstart;
813198921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
813298921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
813398921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
813463a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
813598921bdaSJacob Faibussowitsch           } else {
813698921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
813748a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
813898921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8139eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
814098921bdaSJacob Faibussowitsch               col--;
814198921bdaSJacob Faibussowitsch #else
814298921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
814398921bdaSJacob Faibussowitsch #endif
8144f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
81459566063dSJacob Faibussowitsch                 PetscCall(MatDisAssemble_MPIAIJ(mat));
814698921bdaSJacob Faibussowitsch                 col = in[j];
814798921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
814898921bdaSJacob Faibussowitsch                 B        = aij->B;
814998921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81509371c9d4SSatish Balay                 bimax    = b->imax;
81519371c9d4SSatish Balay                 bi       = b->i;
81529371c9d4SSatish Balay                 bilen    = b->ilen;
81539371c9d4SSatish Balay                 bj       = b->j;
815498921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
815598921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
815698921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
815798921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
815898921bdaSJacob Faibussowitsch                 low2     = 0;
815998921bdaSJacob Faibussowitsch                 high2    = nrow2;
816098921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
816198921bdaSJacob Faibussowitsch                 ba       = b->a;
816298921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
816398921bdaSJacob Faibussowitsch               }
816498921bdaSJacob Faibussowitsch             } else col = in[j];
816598921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
816698921bdaSJacob Faibussowitsch           }
816798921bdaSJacob Faibussowitsch         }
816898921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
816998921bdaSJacob Faibussowitsch         if (roworiented) {
81709566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
817198921bdaSJacob Faibussowitsch         } else {
81729566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
817398921bdaSJacob Faibussowitsch         }
817498921bdaSJacob Faibussowitsch       }
817598921bdaSJacob Faibussowitsch     }
81769566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81779566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
817898921bdaSJacob Faibussowitsch   }
817998921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
818098921bdaSJacob Faibussowitsch }
818172833a62Smarkadams4 
818298921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
818398921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
818498921bdaSJacob Faibussowitsch  * original definitions */
81859566063dSJacob Faibussowitsch #undef PetscCall
818698921bdaSJacob Faibussowitsch #undef SETERRQ
8187