1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 10674b392bSAlexander #define TYPE AIJ 11674b392bSAlexander #define TYPE_AIJ 12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h" 13674b392bSAlexander #undef TYPE 14674b392bSAlexander #undef TYPE_AIJ 15674b392bSAlexander 16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat) 1726cec326SBarry Smith { 1826cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1926cec326SBarry Smith 2026cec326SBarry Smith PetscFunctionBegin; 2126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 2226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 2326cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 2426cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 2526cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2826cec326SBarry Smith #else 2926cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 3026cec326SBarry Smith #endif 3126cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 3226cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 3326cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 3426cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 3526cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 36674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 37674b392bSAlexander } 38674b392bSAlexander 39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat) 40674b392bSAlexander { 41674b392bSAlexander Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 42674b392bSAlexander /* Save the nonzero states of the component matrices because those are what are used to determine 43674b392bSAlexander the nonzero state of mat */ 44674b392bSAlexander PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate; 45674b392bSAlexander 46674b392bSAlexander PetscFunctionBegin; 47674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 48674b392bSAlexander PetscCall(MatSetUp_MPI_Hash(mat)); 49674b392bSAlexander aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate; 50674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 51674b392bSAlexander } 52674b392bSAlexander 53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 54674b392bSAlexander { 55674b392bSAlexander PetscFunctionBegin; 56674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 5726cec326SBarry Smith 5826cec326SBarry Smith PetscCall(PetscFree(mat->data)); 5926cec326SBarry Smith 6026cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 6126cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 6226cec326SBarry Smith 6326cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 69674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 7126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 7326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 7626cec326SBarry Smith #endif 7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 7926cec326SBarry Smith #endif 8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 8126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 8226cec326SBarry Smith #endif 8326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 8526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 8626cec326SBarry Smith #endif 8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 8826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 8926cec326SBarry Smith #endif 9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 9126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 9226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 9326cec326SBarry Smith #endif 9426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 9526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 9626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 9726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 9826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 9926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 10126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 10226cec326SBarry Smith #endif 10326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 10426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 10526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 10626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 10726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 10826cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 10926cec326SBarry Smith } 11026cec326SBarry Smith 111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 112d71ae5a4SJacob Faibussowitsch { 1138a9c020eSBarry Smith Mat B; 1148a9c020eSBarry Smith 1158a9c020eSBarry Smith PetscFunctionBegin; 1168a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 1178a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 1188a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 119501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 1203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1218a9c020eSBarry Smith } 1228a9c020eSBarry Smith 123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 124d71ae5a4SJacob Faibussowitsch { 1258a9c020eSBarry Smith Mat B; 1268a9c020eSBarry Smith 1278a9c020eSBarry Smith PetscFunctionBegin; 1288a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1298a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 130501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1328a9c020eSBarry Smith } 1338a9c020eSBarry Smith 13401bebe75SBarry Smith /*MC 13501bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 13601bebe75SBarry Smith 13711a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 13811a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 13911a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 14001bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14101bebe75SBarry Smith the above preallocation routines for simplicity. 14201bebe75SBarry Smith 14327430b45SBarry Smith Options Database Key: 14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 14501bebe75SBarry Smith 14611a5261eSBarry Smith Developer Note: 1472ef1f0ffSBarry Smith Level: beginner 1482ef1f0ffSBarry Smith 14911a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 15001bebe75SBarry Smith enough exist. 15101bebe75SBarry Smith 1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 15301bebe75SBarry Smith M*/ 15401bebe75SBarry Smith 15501bebe75SBarry Smith /*MC 15601bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 15701bebe75SBarry Smith 15811a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 15911a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 16011a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 16101bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 16201bebe75SBarry Smith the above preallocation routines for simplicity. 16301bebe75SBarry Smith 16427430b45SBarry Smith Options Database Key: 16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 16601bebe75SBarry Smith 16701bebe75SBarry Smith Level: beginner 16801bebe75SBarry Smith 1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 17001bebe75SBarry Smith M*/ 17101bebe75SBarry Smith 172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 173d71ae5a4SJacob Faibussowitsch { 174f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 175f74ef234SStefano Zampini 176f74ef234SStefano Zampini PetscFunctionBegin; 177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 178b470e4b4SRichard Tran Mills A->boundtocpu = flg; 179f74ef234SStefano Zampini #endif 1801baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1811baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1823120d049SRichard Tran Mills 1833120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1843120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1853120d049SRichard Tran Mills * to differ from the parent matrix. */ 1861baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1871baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189f74ef234SStefano Zampini } 190f74ef234SStefano Zampini 191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 192d71ae5a4SJacob Faibussowitsch { 19326bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 19426bda2c4Sstefano_zampini 19526bda2c4Sstefano_zampini PetscFunctionBegin; 19646533700Sstefano_zampini if (mat->A) { 1979566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 19946533700Sstefano_zampini } 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20126bda2c4Sstefano_zampini } 20226bda2c4Sstefano_zampini 203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 204d71ae5a4SJacob Faibussowitsch { 20527d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 20627d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 20727d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 20827d4218bSShri Abhyankar const PetscInt *ia, *ib; 209ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 21027d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 21127d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 21227d4218bSShri Abhyankar 21327d4218bSShri Abhyankar PetscFunctionBegin; 214f4259b30SLisandro Dalcin *keptrows = NULL; 215ce496241SStefano Zampini 21627d4218bSShri Abhyankar ia = a->i; 21727d4218bSShri Abhyankar ib = b->i; 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 22027d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22127d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22227d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22327d4218bSShri Abhyankar if (!na && !nb) { 22427d4218bSShri Abhyankar cnt++; 22527d4218bSShri Abhyankar goto ok1; 22627d4218bSShri Abhyankar } 227ce496241SStefano Zampini aa = aav + ia[i]; 22827d4218bSShri Abhyankar for (j = 0; j < na; j++) { 22927d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 23027d4218bSShri Abhyankar } 2318e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23227d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23327d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar cnt++; 23627d4218bSShri Abhyankar ok1:; 23727d4218bSShri Abhyankar } 238462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 239ce496241SStefano Zampini if (!n0rows) { 2409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243ce496241SStefano Zampini } 2449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 24527d4218bSShri Abhyankar cnt = 0; 24627d4218bSShri Abhyankar for (i = 0; i < m; i++) { 24727d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 24827d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 24927d4218bSShri Abhyankar if (!na && !nb) continue; 250ce496241SStefano Zampini aa = aav + ia[i]; 25127d4218bSShri Abhyankar for (j = 0; j < na; j++) { 25227d4218bSShri Abhyankar if (aa[j] != 0.0) { 25327d4218bSShri Abhyankar rows[cnt++] = rstart + i; 25427d4218bSShri Abhyankar goto ok2; 25527d4218bSShri Abhyankar } 25627d4218bSShri Abhyankar } 2578e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 25827d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 25927d4218bSShri Abhyankar if (bb[j] != 0.0) { 26027d4218bSShri Abhyankar rows[cnt++] = rstart + i; 26127d4218bSShri Abhyankar goto ok2; 26227d4218bSShri Abhyankar } 26327d4218bSShri Abhyankar } 26427d4218bSShri Abhyankar ok2:; 26527d4218bSShri Abhyankar } 2669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27027d4218bSShri Abhyankar } 27127d4218bSShri Abhyankar 272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 273d71ae5a4SJacob Faibussowitsch { 27499e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 27594342113SStefano Zampini PetscBool cong; 27699e65526SBarry Smith 27799e65526SBarry Smith PetscFunctionBegin; 2789566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 27994342113SStefano Zampini if (Y->assembled && cong) { 2809566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 28199e65526SBarry Smith } else { 2829566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 28399e65526SBarry Smith } 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28599e65526SBarry Smith } 28699e65526SBarry Smith 287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 288d71ae5a4SJacob Faibussowitsch { 289f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 290f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 291f1f41ecbSJed Brown 292f1f41ecbSJed Brown PetscFunctionBegin; 2930298fd71SBarry Smith *zrows = NULL; 2949566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2959566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 296f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299f1f41ecbSJed Brown } 300f1f41ecbSJed Brown 301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 302d71ae5a4SJacob Faibussowitsch { 3030716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 304a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 3050716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 3060716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 3070716a85fSBarry Smith PetscReal *work; 308ce496241SStefano Zampini const PetscScalar *dummy; 3090716a85fSBarry Smith 3100716a85fSBarry Smith PetscFunctionBegin; 3119566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 3129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 3139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 3149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 3159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 3169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 319ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 320857cbf51SRichard Tran Mills } else if (type == NORM_1) { 321ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 322ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 323857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 324ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 325ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 326857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 327ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 328ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 329857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 330ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 331ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 332857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 333857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 334e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3350716a85fSBarry Smith } else { 336e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3370716a85fSBarry Smith } 3389566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 339857cbf51SRichard Tran Mills if (type == NORM_2) { 340a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 341857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 342a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3430716a85fSBarry Smith } 3443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3450716a85fSBarry Smith } 3460716a85fSBarry Smith 347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 348d71ae5a4SJacob Faibussowitsch { 349e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 350e52d2c62SBarry Smith IS sis, gis; 351e52d2c62SBarry Smith const PetscInt *isis, *igis; 352e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 353e52d2c62SBarry Smith 354e52d2c62SBarry Smith PetscFunctionBegin; 3559566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3569566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3579566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3589566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 361e52d2c62SBarry Smith 3629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 365e52d2c62SBarry Smith n = ngis + nsis; 3669566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 368e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 370e52d2c62SBarry Smith 3719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376e52d2c62SBarry Smith } 377e52d2c62SBarry Smith 378dd6ea824SBarry Smith /* 3790f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3810f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 38372fa4726SStefano Zampini has an order N integer array but is fast to access. 3849e25ed09SBarry Smith */ 385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 386d71ae5a4SJacob Faibussowitsch { 38744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 388d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 389dbb450caSBarry Smith 3903a40ed3dSBarry Smith PetscFunctionBegin; 39108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 393eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 394c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 395b1fc9764SSatish Balay #else 3969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 397905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 398b1fc9764SSatish Balay #endif 3993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4009e25ed09SBarry Smith } 4019e25ed09SBarry Smith 402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 403a8f51744SPierre Jolivet do { \ 404db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 405db4deed7SKarl Rupp else high1 = nrow1; \ 406fd3458f5SBarry Smith lastcol1 = col; \ 407fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 408fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 409fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 410fd3458f5SBarry Smith else low1 = t; \ 411ba4e3ef2SSatish Balay } \ 412fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 413fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 414fd3458f5SBarry Smith if (rp1[_i] == col) { \ 4150c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4160c0d7e18SFande Kong ap1[_i] += value; \ 4179680b7ceSStefano Zampini /* Not sure LogFlops will slow down the code or not */ \ 4180c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4199371c9d4SSatish Balay } else ap1[_i] = value; \ 42030770e4dSSatish Balay goto a_noinsert; \ 4210520107fSSatish Balay } \ 4220520107fSSatish Balay } \ 4239371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4249371c9d4SSatish Balay low1 = 0; \ 4259371c9d4SSatish Balay high1 = nrow1; \ 4269371c9d4SSatish Balay goto a_noinsert; \ 4279371c9d4SSatish Balay } \ 4289371c9d4SSatish Balay if (nonew == 1) { \ 4299371c9d4SSatish Balay low1 = 0; \ 4309371c9d4SSatish Balay high1 = nrow1; \ 4319371c9d4SSatish Balay goto a_noinsert; \ 4329371c9d4SSatish Balay } \ 43308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 434fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4359371c9d4SSatish Balay N = nrow1++ - 1; \ 4369371c9d4SSatish Balay a->nz++; \ 4379371c9d4SSatish Balay high1++; \ 4380520107fSSatish Balay /* shift up all the later entries in this row */ \ 4399566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4409566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 441fd3458f5SBarry Smith rp1[_i] = col; \ 442fd3458f5SBarry Smith ap1[_i] = value; \ 44330770e4dSSatish Balay a_noinsert:; \ 444fd3458f5SBarry Smith ailen[row] = nrow1; \ 445a8f51744SPierre Jolivet } while (0) 4460a198c4cSBarry Smith 447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 448a8f51744SPierre Jolivet do { \ 449db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 450db4deed7SKarl Rupp else high2 = nrow2; \ 451fd3458f5SBarry Smith lastcol2 = col; \ 452fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 453fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 454fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 455fd3458f5SBarry Smith else low2 = t; \ 456ba4e3ef2SSatish Balay } \ 457fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 458fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 459fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4600c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4610c0d7e18SFande Kong ap2[_i] += value; \ 4620c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4639371c9d4SSatish Balay } else ap2[_i] = value; \ 46430770e4dSSatish Balay goto b_noinsert; \ 46530770e4dSSatish Balay } \ 46630770e4dSSatish Balay } \ 4679371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4689371c9d4SSatish Balay low2 = 0; \ 4699371c9d4SSatish Balay high2 = nrow2; \ 4709371c9d4SSatish Balay goto b_noinsert; \ 4719371c9d4SSatish Balay } \ 4729371c9d4SSatish Balay if (nonew == 1) { \ 4739371c9d4SSatish Balay low2 = 0; \ 4749371c9d4SSatish Balay high2 = nrow2; \ 4759371c9d4SSatish Balay goto b_noinsert; \ 4769371c9d4SSatish Balay } \ 47708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 478fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4799371c9d4SSatish Balay N = nrow2++ - 1; \ 4809371c9d4SSatish Balay b->nz++; \ 4819371c9d4SSatish Balay high2++; \ 48230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4839566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4849566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 485fd3458f5SBarry Smith rp2[_i] = col; \ 486fd3458f5SBarry Smith ap2[_i] = value; \ 48730770e4dSSatish Balay b_noinsert:; \ 488fd3458f5SBarry Smith bilen[row] = nrow2; \ 489a8f51744SPierre Jolivet } while (0) 49030770e4dSSatish Balay 491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 492d71ae5a4SJacob Faibussowitsch { 4932fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4942fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4952fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 496fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith PetscFunctionBegin; 4992fd7e33dSBarry Smith /* code only works for square matrices A */ 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 5029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 5032fd7e33dSBarry Smith row = row - diag; 5042fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 5052fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 5062fd7e33dSBarry Smith } 507fff043a9SJunchao Zhang if (l) { 5089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 5109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 511fff043a9SJunchao Zhang } 5122fd7e33dSBarry Smith 5132fd7e33dSBarry Smith /* diagonal part */ 514fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 5159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 51657508eceSPierre Jolivet PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row])); 5179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 518fff043a9SJunchao Zhang } 5192fd7e33dSBarry Smith 5202fd7e33dSBarry Smith /* right of diagonal part */ 521fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 525fff043a9SJunchao Zhang } 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5272fd7e33dSBarry Smith } 5282fd7e33dSBarry Smith 529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 530d71ae5a4SJacob Faibussowitsch { 53144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 532071fcb05SBarry Smith PetscScalar value = 0.0; 533d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 534d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 535ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5368a729477SBarry Smith 5370520107fSSatish Balay /* Some Variables required in the macro */ 5384ee7247eSSatish Balay Mat A = aij->A; 5394ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 54057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 541ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 54230770e4dSSatish Balay Mat B = aij->B; 54330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 544d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 545ce496241SStefano Zampini MatScalar *aa, *ba; 546fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5478d76821aSHong Zhang PetscInt nonew; 548a77337e4SBarry Smith MatScalar *ap1, *ap2; 5494ee7247eSSatish Balay 5503a40ed3dSBarry Smith PetscFunctionBegin; 5519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5538a729477SBarry Smith for (i = 0; i < m; i++) { 5545ef9f2a5SBarry Smith if (im[i] < 0) continue; 55508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5564b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5574b0e389bSBarry Smith row = im[i] - rstart; 558fd3458f5SBarry Smith lastcol1 = -1; 5598e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5608e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 561fd3458f5SBarry Smith rmax1 = aimax[row]; 562fd3458f5SBarry Smith nrow1 = ailen[row]; 563fd3458f5SBarry Smith low1 = 0; 564fd3458f5SBarry Smith high1 = nrow1; 565fd3458f5SBarry Smith lastcol2 = -1; 5668e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5678e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 568fd3458f5SBarry Smith rmax2 = bimax[row]; 569d498b1e9SBarry Smith nrow2 = bilen[row]; 570fd3458f5SBarry Smith low2 = 0; 571fd3458f5SBarry Smith high2 = nrow2; 572fd3458f5SBarry Smith 5731eb62cbbSBarry Smith for (j = 0; j < n; j++) { 574071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 575c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 576fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 577fd3458f5SBarry Smith col = in[j] - cstart; 5788d76821aSHong Zhang nonew = a->nonew; 579d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 580f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 581f7d195e4SLawrence Mitchell continue; 582f7d195e4SLawrence Mitchell } else { 583f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 584227d817aSBarry Smith if (mat->was_assembled) { 58548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 587eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 588fa46199cSSatish Balay col--; 589b1fc9764SSatish Balay #else 590905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 591b1fc9764SSatish Balay #endif 592f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 593eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); /* Change aij->B from reduced/local format to expanded/global format */ 5944b0e389bSBarry Smith col = in[j]; 5959bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 596f9508a3cSSatish Balay B = aij->B; 597f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5989371c9d4SSatish Balay bimax = b->imax; 5999371c9d4SSatish Balay bi = b->i; 6009371c9d4SSatish Balay bilen = b->ilen; 6019371c9d4SSatish Balay bj = b->j; 6029371c9d4SSatish Balay ba = b->a; 603cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 604cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 605d498b1e9SBarry Smith rmax2 = bimax[row]; 606d498b1e9SBarry Smith nrow2 = bilen[row]; 607d498b1e9SBarry Smith low2 = 0; 608d498b1e9SBarry Smith high2 = nrow2; 609d0f46423SBarry Smith bm = aij->B->rmap->n; 610f9508a3cSSatish Balay ba = b->a; 611d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 612966bd95aSPierre Jolivet PetscCheck(1 == ((Mat_SeqAIJ *)aij->B->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 6139566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 6140587a0fcSBarry Smith } 615c48de900SBarry Smith } else col = in[j]; 6168d76821aSHong Zhang nonew = b->nonew; 617d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6181eb62cbbSBarry Smith } 6191eb62cbbSBarry Smith } 6205ef9f2a5SBarry Smith } else { 62128b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 62290f02eecSBarry Smith if (!aij->donotstash) { 6235080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 624d36fbae8SSatish Balay if (roworiented) { 6258e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 626d36fbae8SSatish Balay } else { 6278e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6284b0e389bSBarry Smith } 6291eb62cbbSBarry Smith } 6308a729477SBarry Smith } 63190f02eecSBarry Smith } 6325519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6358a729477SBarry Smith } 6368a729477SBarry Smith 6372b08fdbeSandi selinger /* 638904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6392b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 640904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6412b08fdbeSandi selinger */ 642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 643d71ae5a4SJacob Faibussowitsch { 644904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 645904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6464cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 647904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 648904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 649904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 650904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 651904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6526dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 653904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 654904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 655904d1e70Sandi selinger 656904d1e70Sandi selinger PetscFunctionBegin; 657904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 658904d1e70Sandi selinger for (j = 0; j < am; j++) { 659904d1e70Sandi selinger dnz = onz = 0; 660904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6616dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 662904d1e70Sandi selinger /* If column is in the diagonal */ 663904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 664904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 665904d1e70Sandi selinger dnz++; 666904d1e70Sandi selinger } else { /* off-diagonal entries */ 667904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 668904d1e70Sandi selinger onz++; 669904d1e70Sandi selinger } 670904d1e70Sandi selinger } 671904d1e70Sandi selinger ailen[j] = dnz; 672904d1e70Sandi selinger bilen[j] = onz; 673904d1e70Sandi selinger } 6743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 675904d1e70Sandi selinger } 676904d1e70Sandi selinger 677904d1e70Sandi selinger /* 678904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 679904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6801de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6811de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6821de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 683904d1e70Sandi selinger */ 684d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 685d71ae5a4SJacob Faibussowitsch { 6863a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6873a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6884cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 689f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6903a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6913a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6923a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6933a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6943a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6956dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6961de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 697904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 698904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6993a063d27Sandi selinger 7003a063d27Sandi selinger PetscFunctionBegin; 7013a063d27Sandi selinger /* Iterate over all rows of the matrix */ 7023a063d27Sandi selinger for (j = 0; j < am; j++) { 703904d1e70Sandi selinger dnz_row = onz_row = 0; 704904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 705904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 706e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 707e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 708ae8e66a0Sandi selinger /* If column is in the diagonal */ 7093a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 710904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 711904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 712904d1e70Sandi selinger dnz_row++; 713ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 714904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 715904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 716904d1e70Sandi selinger onz_row++; 7173a063d27Sandi selinger } 7183a063d27Sandi selinger } 719904d1e70Sandi selinger ailen[j] = dnz_row; 720904d1e70Sandi selinger bilen[j] = onz_row; 7213a063d27Sandi selinger } 7223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7233a063d27Sandi selinger } 7243a063d27Sandi selinger 725ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 726d71ae5a4SJacob Faibussowitsch { 727b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 728d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 729d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 730b49de8d1SLois Curfman McInnes 7313a40ed3dSBarry Smith PetscFunctionBegin; 732b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 73354c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 73454c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 73585835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 736b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 737b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 73854c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 73954c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 740b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 741b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7429566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 743fa852ad4SSatish Balay } else { 74448a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 745aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 746eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 747fa46199cSSatish Balay col--; 748b1fc9764SSatish Balay #else 749905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 750b1fc9764SSatish Balay #endif 751e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 75248a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 753b49de8d1SLois Curfman McInnes } 754b49de8d1SLois Curfman McInnes } 755b49de8d1SLois Curfman McInnes } 7563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 757b49de8d1SLois Curfman McInnes } 758bc5ccf88SSatish Balay 759ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 760d71ae5a4SJacob Faibussowitsch { 761bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 762b1d57f15SBarry Smith PetscInt nstash, reallocs; 763bc5ccf88SSatish Balay 764bc5ccf88SSatish Balay PetscFunctionBegin; 7653ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 766bc5ccf88SSatish Balay 7679566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7689566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7699566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771bc5ccf88SSatish Balay } 772bc5ccf88SSatish Balay 773d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 774d71ae5a4SJacob Faibussowitsch { 775bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 776b1d57f15SBarry Smith PetscMPIInt n; 777b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 778e44c0bd4SBarry Smith PetscInt *row, *col; 779c0edf612SJunchao Zhang PetscBool all_assembled; 78087828ca2SBarry Smith PetscScalar *val; 781bc5ccf88SSatish Balay 78291c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7836e111a19SKarl Rupp 784bc5ccf88SSatish Balay PetscFunctionBegin; 7854cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 786a2d1c673SSatish Balay while (1) { 7879566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 788a2d1c673SSatish Balay if (!flg) break; 789a2d1c673SSatish Balay 790bc5ccf88SSatish Balay for (i = 0; i < n;) { 791bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7922205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7932205254eSKarl Rupp if (row[j] != rstart) break; 7942205254eSKarl Rupp } 795bc5ccf88SSatish Balay if (j < n) ncols = j - i; 796bc5ccf88SSatish Balay else ncols = n - i; 797bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7989566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 799bc5ccf88SSatish Balay i = j; 800bc5ccf88SSatish Balay } 801bc5ccf88SSatish Balay } 8029566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 803bc5ccf88SSatish Balay } 8048c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 805c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 8069ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 8079ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 8089566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 8099566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 8109ecce9b1SRichard Tran Mills } 811e2cf4d64SStefano Zampini #endif 8129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 814bc5ccf88SSatish Balay 815b638e6b4SJunchao Zhang /* determine if any process has disassembled, if so we must 816071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 817bc5ccf88SSatish Balay /* 818bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 819b638e6b4SJunchao Zhang no process disassembled thus we can skip this stuff 820bc5ccf88SSatish Balay */ 821bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 822*5440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 823c0edf612SJunchao Zhang if (mat->was_assembled && !all_assembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 824eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 825ad59fb31SSatish Balay } 826ad59fb31SSatish Balay } 82748a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8289566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8298c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 830c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 831e2cf4d64SStefano Zampini #endif 8329566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8339566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 834bc5ccf88SSatish Balay 8359566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8362205254eSKarl Rupp 837f4259b30SLisandro Dalcin aij->rowvalues = NULL; 838a30b2313SHong Zhang 8399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 840e56f5c9eSBarry Smith 8414f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 842f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 843e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 844462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 845e56f5c9eSBarry Smith } 8468c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 847c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 848e2cf4d64SStefano Zampini #endif 8493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 850bc5ccf88SSatish Balay } 851bc5ccf88SSatish Balay 852ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 853d71ae5a4SJacob Faibussowitsch { 85444a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8553a40ed3dSBarry Smith 8563a40ed3dSBarry Smith PetscFunctionBegin; 8579566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8589566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8601eb62cbbSBarry Smith } 8611eb62cbbSBarry Smith 862ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 863d71ae5a4SJacob Faibussowitsch { 8641b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8651b1dd7adSMatthew G. Knepley PetscInt *lrows; 8666e520ac8SStefano Zampini PetscInt r, len; 8679939a2d1SBarry Smith PetscBool cong; 8681eb62cbbSBarry Smith 8693a40ed3dSBarry Smith PetscFunctionBegin; 8706e520ac8SStefano Zampini /* get locally owned rows */ 8719566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8729566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 873dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 87497b48c8fSBarry Smith if (x && b) { 8751b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8761b1dd7adSMatthew G. Knepley PetscScalar *bb; 8771b1dd7adSMatthew G. Knepley 87828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8799566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8809566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8811b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8829566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 88497b48c8fSBarry Smith } 885a92ad425SStefano Zampini 886a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8879566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 889a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 890a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 891a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 892a92ad425SStefano Zampini PetscInt nnwA, nnwB; 893a92ad425SStefano Zampini PetscBool nnzA, nnzB; 894a92ad425SStefano Zampini 895a92ad425SStefano Zampini nnwA = aijA->nonew; 896a92ad425SStefano Zampini nnwB = aijB->nonew; 897a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 898a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 899a92ad425SStefano Zampini if (!nnzA) { 9009566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 901a92ad425SStefano Zampini aijA->nonew = 0; 902a92ad425SStefano Zampini } 903a92ad425SStefano Zampini if (!nnzB) { 9049566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 905a92ad425SStefano Zampini aijB->nonew = 0; 906a92ad425SStefano Zampini } 907a92ad425SStefano Zampini /* Must zero here before the next loop */ 9089566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9099566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9101b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 9111b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 912a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 9139566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 914e2d53e46SBarry Smith } 915a92ad425SStefano Zampini aijA->nonew = nnwA; 916a92ad425SStefano Zampini aijB->nonew = nnwB; 9176eb55b6aSBarry Smith } else { 9189566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9199566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9206eb55b6aSBarry Smith } 9219566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9229566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9239566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9244f9cfa9eSBarry Smith 9259939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 926f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9279939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 928462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9299939a2d1SBarry Smith } 9303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9311eb62cbbSBarry Smith } 9321eb62cbbSBarry Smith 933ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 934d71ae5a4SJacob Faibussowitsch { 9359c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9366497c311SBarry Smith PetscInt n = A->rmap->n; 937131c27b5Sprj- PetscInt i, j, r, m, len = 0; 93854bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 939131c27b5Sprj- PetscMPIInt p = 0; 94054bd4135SMatthew G. Knepley PetscSFNode *rrows; 94154bd4135SMatthew G. Knepley PetscSF sf; 9429c7c4993SBarry Smith const PetscScalar *xx; 943fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 944564f14d6SBarry Smith Vec xmask, lmask; 945564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 946564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 947564f14d6SBarry Smith PetscScalar *aa; 9489c7c4993SBarry Smith 9499c7c4993SBarry Smith PetscFunctionBegin; 95054bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 95254bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 95454bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 95554bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 956aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9575ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9589566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9595ba17502SJed Brown } 96054bd4135SMatthew G. Knepley rrows[r].rank = p; 96154bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9629c7c4993SBarry Smith } 9639566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9649566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 96554bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9669566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9679566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9689566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 96954bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9709371c9d4SSatish Balay for (r = 0; r < n; ++r) 9719371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 972564f14d6SBarry Smith /* zero diagonal part of matrix */ 9739566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9744cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9759566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9769566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9779566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 97854bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9819566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 983a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 984a92ad425SStefano Zampini PetscBool cong; 985a92ad425SStefano Zampini 9869566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 98728b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9889566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9899566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9919566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 992377aa5a1SBarry Smith } 9939566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9944cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 996564f14d6SBarry Smith ii = aij->i; 9978e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 998564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 999564f14d6SBarry Smith if (aij->compressedrow.use) { 1000564f14d6SBarry Smith m = aij->compressedrow.nrows; 1001564f14d6SBarry Smith ii = aij->compressedrow.i; 1002564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 1003564f14d6SBarry Smith for (i = 0; i < m; i++) { 1004564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1005564f14d6SBarry Smith aj = aij->j + ii[i]; 1006fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1007564f14d6SBarry Smith 1008564f14d6SBarry Smith for (j = 0; j < n; j++) { 100925266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1010377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 1011564f14d6SBarry Smith *aa = 0.0; 1012564f14d6SBarry Smith } 1013564f14d6SBarry Smith aa++; 1014564f14d6SBarry Smith aj++; 1015564f14d6SBarry Smith } 1016564f14d6SBarry Smith ridx++; 1017564f14d6SBarry Smith } 1018564f14d6SBarry Smith } else { /* do not use compressed row format */ 1019564f14d6SBarry Smith m = l->B->rmap->n; 1020564f14d6SBarry Smith for (i = 0; i < m; i++) { 1021564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1022564f14d6SBarry Smith aj = aij->j + ii[i]; 1023fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1024564f14d6SBarry Smith for (j = 0; j < n; j++) { 102525266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1026377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1027564f14d6SBarry Smith *aa = 0.0; 1028564f14d6SBarry Smith } 1029564f14d6SBarry Smith aa++; 1030564f14d6SBarry Smith aj++; 1031564f14d6SBarry Smith } 1032564f14d6SBarry Smith } 1033564f14d6SBarry Smith } 1034a92ad425SStefano Zampini if (x && b) { 10359566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10369566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1037377aa5a1SBarry Smith } 10389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10419566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10424f9cfa9eSBarry Smith 10434f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1044f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10454f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1046462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10474f9cfa9eSBarry Smith } 10483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10499c7c4993SBarry Smith } 10509c7c4993SBarry Smith 1051ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1052d71ae5a4SJacob Faibussowitsch { 1053416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1054b1d57f15SBarry Smith PetscInt nt; 105519b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1056416022c9SBarry Smith 10573a40ed3dSBarry Smith PetscFunctionBegin; 10589566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 105908401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10609566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1061296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10629566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1063296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10651eb62cbbSBarry Smith } 10661eb62cbbSBarry Smith 1067ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1068d71ae5a4SJacob Faibussowitsch { 1069bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1070bd0c2dcbSBarry Smith 1071bd0c2dcbSBarry Smith PetscFunctionBegin; 10729566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1074bd0c2dcbSBarry Smith } 1075bd0c2dcbSBarry Smith 1076ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1077d71ae5a4SJacob Faibussowitsch { 1078416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 107901ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10803a40ed3dSBarry Smith 10813a40ed3dSBarry Smith PetscFunctionBegin; 10829566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10839566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10849566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10859566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1087da3a660dSBarry Smith } 1088da3a660dSBarry Smith 1089ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1090d71ae5a4SJacob Faibussowitsch { 1091416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1092da3a660dSBarry Smith 10933a40ed3dSBarry Smith PetscFunctionBegin; 1094da3a660dSBarry Smith /* do nondiagonal part */ 10959566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1096da3a660dSBarry Smith /* do local part */ 10979566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10989613dc34SJunchao Zhang /* add partial results together */ 10999566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11009566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1102da3a660dSBarry Smith } 1103da3a660dSBarry Smith 1104ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1105d71ae5a4SJacob Faibussowitsch { 11064f423910Svictorle MPI_Comm comm; 1107ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1108ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1109cd0d46ebSvictorle IS Me, Notme; 1110b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 111154d735aeSStefano Zampini PetscBool lf; 1112b1d57f15SBarry Smith PetscMPIInt size; 1113cd0d46ebSvictorle 1114cd0d46ebSvictorle PetscFunctionBegin; 111542e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 11169566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 1117*5440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11183ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11213ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 112242e5f5b4Svictorle 11237dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11249566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11259566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1127cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1128cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11299566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11309566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11319566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 113266501d38Svictorle Aoff = Aoffs[0]; 11339566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 113466501d38Svictorle Boff = Boffs[0]; 11359566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11369566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11379566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11409566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1142cd0d46ebSvictorle } 1143cd0d46ebSvictorle 1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1145d71ae5a4SJacob Faibussowitsch { 1146416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1147da3a660dSBarry Smith 11483a40ed3dSBarry Smith PetscFunctionBegin; 1149da3a660dSBarry Smith /* do nondiagonal part */ 11509566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1151da3a660dSBarry Smith /* do local part */ 11529566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11539613dc34SJunchao Zhang /* add partial results together */ 11549566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11559566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1157da3a660dSBarry Smith } 1158da3a660dSBarry Smith 11591eb62cbbSBarry Smith /* 11601eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11611eb62cbbSBarry Smith diagonal block 11621eb62cbbSBarry Smith */ 1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1164d71ae5a4SJacob Faibussowitsch { 1165416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11663a40ed3dSBarry Smith 11673a40ed3dSBarry Smith PetscFunctionBegin; 116808401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1169aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11709566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11721eb62cbbSBarry Smith } 11731eb62cbbSBarry Smith 1174ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1175d71ae5a4SJacob Faibussowitsch { 1176052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11773a40ed3dSBarry Smith 11783a40ed3dSBarry Smith PetscFunctionBegin; 11799566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11809566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1182052efed2SBarry Smith } 1183052efed2SBarry Smith 1184ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1185d71ae5a4SJacob Faibussowitsch { 11868e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11878e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11888e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11893ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11902e5835c6SStefano Zampini const PetscScalar *aa, *ba; 119117a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 119217a3732bSBarry Smith PetscInt64 nz, hnz; 11933ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11943ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11953ea6fe3dSLisandro Dalcin PetscScalar *matvals; 119617a3732bSBarry Smith PetscMPIInt rank; 11978e2fed03SBarry Smith 11988e2fed03SBarry Smith PetscFunctionBegin; 11999566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 12003ea6fe3dSLisandro Dalcin 12013ea6fe3dSLisandro Dalcin M = mat->rmap->N; 12023ea6fe3dSLisandro Dalcin N = mat->cmap->N; 12033ea6fe3dSLisandro Dalcin m = mat->rmap->n; 12043ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 12053ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 12068e2fed03SBarry Smith nz = A->nz + B->nz; 12073ea6fe3dSLisandro Dalcin 12083ea6fe3dSLisandro Dalcin /* write matrix header */ 12090700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 12109371c9d4SSatish Balay header[1] = M; 12119371c9d4SSatish Balay header[2] = N; 121217a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 121317a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 1214835f2295SStefano Zampini if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 12159566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12168e2fed03SBarry Smith 12173ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12193ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12209566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12219566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12228e2fed03SBarry Smith 12233ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12253ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12263ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12273ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12283ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12298e2fed03SBarry Smith } 12309371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12319371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12328e2fed03SBarry Smith } 123317a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12349566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12359566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12368e2fed03SBarry Smith 12373ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12413ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12423ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12433ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12442e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12458e2fed03SBarry Smith } 12469371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12479371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12488e2fed03SBarry Smith } 12499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 125117a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12529566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12539566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12548e2fed03SBarry Smith 12553ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12569566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12588e2fed03SBarry Smith } 12598e2fed03SBarry Smith 12609804daf3SBarry Smith #include <petscdraw.h> 1261ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1262d71ae5a4SJacob Faibussowitsch { 126344a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 126432dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 12659f196a02SMartin Diehl PetscBool isdraw, isascii, isbinary; 1266b0a32e0cSBarry Smith PetscViewer sviewer; 1267f3ef73ceSBarry Smith PetscViewerFormat format; 1268416022c9SBarry Smith 12693a40ed3dSBarry Smith PetscFunctionBegin; 12709566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12719f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 12739f196a02SMartin Diehl if (isascii) { 12749566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1275ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 12761690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1279835f2295SStefano Zampini for (i = 0; i < size; i++) { 1280ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1281ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1282ef5fdb51SBarry Smith navg += nz[i]; 1283ef5fdb51SBarry Smith } 12849566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1285ef5fdb51SBarry Smith navg = navg / size; 12869566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1288ef5fdb51SBarry Smith } 12899566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1290456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12914e220ebcSLois Curfman McInnes MatInfo info; 12926335e310SSatish Balay PetscInt *inodes = NULL; 1293923f20ffSKris Buschelman 12949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12959566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12969566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1298923f20ffSKris Buschelman if (!inodes) { 12999371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1300835f2295SStefano Zampini info.memory)); 13016831982aSBarry Smith } else { 1302835f2295SStefano Zampini PetscCall( 1303835f2295SStefano Zampini PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory)); 13046831982aSBarry Smith } 13059566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 13069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13079566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13089566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13099566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13109566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13129566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1314fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1315923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13169566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1317923f20ffSKris Buschelman if (inodes) { 13189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1319d38fa0fbSBarry Smith } else { 13209566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1321d38fa0fbSBarry Smith } 13223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13234aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132508480c60SBarry Smith } 13268e2fed03SBarry Smith } else if (isbinary) { 13278e2fed03SBarry Smith if (size == 1) { 13289566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13299566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13308e2fed03SBarry Smith } else { 13319566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13328e2fed03SBarry Smith } 13333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13349f196a02SMartin Diehl } else if (isascii && size == 1) { 13359566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13369566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13380f5bd95cSBarry Smith } else if (isdraw) { 1339b0a32e0cSBarry Smith PetscDraw draw; 1340ace3abfcSBarry Smith PetscBool isnull; 13419566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13429566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13433ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 134419bcc07fSBarry Smith } 134519bcc07fSBarry Smith 134671e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 134771e56450SStefano Zampini Mat A = NULL, Av; 134871e56450SStefano Zampini IS isrow, iscol; 13492ee70a88SLois Curfman McInnes 13509566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13519566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13529566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13539566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 135471e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 135571e56450SStefano Zampini /* 135671e56450SStefano Zampini Mat *AA, A = NULL, Av; 135771e56450SStefano Zampini IS isrow,iscol; 135871e56450SStefano Zampini 13599566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13609566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13619566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1362dd400576SPatrick Sanan if (rank == 0) { 13639566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 136471e56450SStefano Zampini A = AA[0]; 136571e56450SStefano Zampini Av = AA[0]; 136695373324SBarry Smith } 13679566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136871e56450SStefano Zampini */ 13699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 137155843e3eSBarry Smith /* 137255843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1373b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 137455843e3eSBarry Smith */ 13759566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1376dd400576SPatrick Sanan if (rank == 0) { 137748a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13789566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 137995373324SBarry Smith } 13809566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13819566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 138295373324SBarry Smith } 13833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13841eb62cbbSBarry Smith } 13851eb62cbbSBarry Smith 1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1387d71ae5a4SJacob Faibussowitsch { 13889f196a02SMartin Diehl PetscBool isascii, isdraw, issocket, isbinary; 1389416022c9SBarry Smith 13903a40ed3dSBarry Smith PetscFunctionBegin; 13919f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 13929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 13959f196a02SMartin Diehl if (isascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1397416022c9SBarry Smith } 1398416022c9SBarry Smith 1399ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1400d71ae5a4SJacob Faibussowitsch { 140144a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1402f4259b30SLisandro Dalcin Vec bb1 = NULL; 1403ace3abfcSBarry Smith PetscBool hasop; 14048a729477SBarry Smith 14053a40ed3dSBarry Smith PetscFunctionBegin; 1406a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 14079566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1409a2b30743SBarry Smith } 1410a2b30743SBarry Smith 141148a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14124e980039SJed Brown 1413c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1414da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14159566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14162798e883SHong Zhang its--; 1417da3a660dSBarry Smith } 14182798e883SHong Zhang 14192798e883SHong Zhang while (its--) { 14209566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14219566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14222798e883SHong Zhang 1423c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14249566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14259566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14262798e883SHong Zhang 1427c14dc6b6SHong Zhang /* local sweep */ 14289566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14292798e883SHong Zhang } 14303a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1431da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14329566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14332798e883SHong Zhang its--; 1434da3a660dSBarry Smith } 14352798e883SHong Zhang while (its--) { 14369566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14379566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14382798e883SHong Zhang 1439c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14409566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14419566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1442c14dc6b6SHong Zhang 1443c14dc6b6SHong Zhang /* local sweep */ 14449566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14452798e883SHong Zhang } 14463a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1447da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14489566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14492798e883SHong Zhang its--; 1450da3a660dSBarry Smith } 14512798e883SHong Zhang while (its--) { 14529566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14539566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14542798e883SHong Zhang 1455c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14569566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14579566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14582798e883SHong Zhang 1459c14dc6b6SHong Zhang /* local sweep */ 14609566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14612798e883SHong Zhang } 1462a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1463a7420bb7SBarry Smith Vec xx1; 1464a7420bb7SBarry Smith 14659566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14669566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1467a7420bb7SBarry Smith 14689566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14699566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1470a7420bb7SBarry Smith if (!mat->diag) { 14719566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14729566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1473a7420bb7SBarry Smith } 14749566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1475bd0c2dcbSBarry Smith if (hasop) { 14769566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1477bd0c2dcbSBarry Smith } else { 14789566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1479bd0c2dcbSBarry Smith } 14809566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1481887ee2caSBarry Smith 14829566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1483a7420bb7SBarry Smith 1484a7420bb7SBarry Smith /* local sweep */ 14859566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14869566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1488ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1489c14dc6b6SHong Zhang 14909566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1491a0808db4SHong Zhang 14927b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14948a729477SBarry Smith } 1495a66be287SLois Curfman McInnes 1496ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1497d71ae5a4SJacob Faibussowitsch { 149872e6a0cfSJed Brown Mat aA, aB, Aperm; 149972e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 150072e6a0cfSJed Brown PetscScalar *aa, *ba; 150172e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 150272e6a0cfSJed Brown PetscSF rowsf, sf; 15030298fd71SBarry Smith IS parcolp = NULL; 150472e6a0cfSJed Brown PetscBool done; 150542e855d1Svictor 150642e855d1Svictor PetscFunctionBegin; 15079566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15089566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15109566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 151172e6a0cfSJed Brown 151272e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15139566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15149566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15159566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 151672e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15179566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 151972e6a0cfSJed Brown 152072e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15219566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 152472e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15259566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15269566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15279566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152872e6a0cfSJed Brown 15299566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15319566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 153272e6a0cfSJed Brown 153372e6a0cfSJed Brown /* Find out where my gcols should go */ 15349566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15369566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15379566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15389566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15419566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 154272e6a0cfSJed Brown 15439566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15449566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15459566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 154672e6a0cfSJed Brown for (i = 0; i < m; i++) { 1547131c27b5Sprj- PetscInt row = rdest[i]; 1548131c27b5Sprj- PetscMPIInt rowner; 15499566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 155072e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1551131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1552131c27b5Sprj- PetscMPIInt cowner; 15539566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 155472e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155572e6a0cfSJed Brown else onnz[i]++; 155672e6a0cfSJed Brown } 155772e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1558131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1559131c27b5Sprj- PetscMPIInt cowner; 15609566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 156172e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 156272e6a0cfSJed Brown else onnz[i]++; 156372e6a0cfSJed Brown } 156472e6a0cfSJed Brown } 15659566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 157072e6a0cfSJed Brown 15719566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 157472e6a0cfSJed Brown for (i = 0; i < m; i++) { 157572e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1576970468b0SJed Brown PetscInt j0, rowlen; 157772e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1578970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1579970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15809566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1581970468b0SJed Brown } 158272e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1583970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1584970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15859566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1586970468b0SJed Brown } 158772e6a0cfSJed Brown } 15889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15909566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15919566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15949566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15959566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15969566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15979566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159872e6a0cfSJed Brown *B = Aperm; 15993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 160042e855d1Svictor } 160142e855d1Svictor 1602ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1603d71ae5a4SJacob Faibussowitsch { 1604c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1605c5e4d11fSDmitry Karpeev 1606c5e4d11fSDmitry Karpeev PetscFunctionBegin; 16079566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1608c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1610c5e4d11fSDmitry Karpeev } 1611c5e4d11fSDmitry Karpeev 1612ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1613d71ae5a4SJacob Faibussowitsch { 1614a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1615a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16163966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1617a66be287SLois Curfman McInnes 16183a40ed3dSBarry Smith PetscFunctionBegin; 16194e220ebcSLois Curfman McInnes info->block_size = 1.0; 16209566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16212205254eSKarl Rupp 16229371c9d4SSatish Balay isend[0] = info->nz_used; 16239371c9d4SSatish Balay isend[1] = info->nz_allocated; 16249371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16259371c9d4SSatish Balay isend[3] = info->memory; 16269371c9d4SSatish Balay isend[4] = info->mallocs; 16272205254eSKarl Rupp 16289566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16292205254eSKarl Rupp 16309371c9d4SSatish Balay isend[0] += info->nz_used; 16319371c9d4SSatish Balay isend[1] += info->nz_allocated; 16329371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16339371c9d4SSatish Balay isend[3] += info->memory; 16349371c9d4SSatish Balay isend[4] += info->mallocs; 1635a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16364e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16374e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16384e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16394e220ebcSLois Curfman McInnes info->memory = isend[3]; 16404e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1641a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1642462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16432205254eSKarl Rupp 16444e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16454e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16464e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16474e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16484e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1649a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1650462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16512205254eSKarl Rupp 16524e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16534e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16544e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16554e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16564e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1657a66be287SLois Curfman McInnes } 16584e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16594e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16604e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1662a66be287SLois Curfman McInnes } 1663a66be287SLois Curfman McInnes 1664d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1665d71ae5a4SJacob Faibussowitsch { 1666c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1667c74985f6SBarry Smith 16683a40ed3dSBarry Smith PetscFunctionBegin; 166912c028f9SKris Buschelman switch (op) { 1670512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 167112c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 167228b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1673a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 167412c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16750ad02fcaSStefano Zampini case MAT_USE_INODES: 167612c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16771a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1678fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16799566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168112c028f9SKris Buschelman break; 168212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 168343674050SBarry Smith MatCheckPreallocated(A, 1); 16844e0d8c25SBarry Smith a->roworiented = flg; 16852205254eSKarl Rupp 16869566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168812c028f9SKris Buschelman break; 1689d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1690d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1691d71ae5a4SJacob Faibussowitsch break; 1692c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1693ffa07934SHong Zhang case MAT_SPD: 169477e54ba9SKris Buschelman case MAT_SYMMETRIC: 169577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1696bf108f30SBarry Smith case MAT_HERMITIAN: 1697bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1698b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1699b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1700b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 17019725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 170277e54ba9SKris Buschelman break; 1703d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1704d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1705d71ae5a4SJacob Faibussowitsch break; 1706d71ae5a4SJacob Faibussowitsch default: 1707888c827cSStefano Zampini break; 17083a40ed3dSBarry Smith } 17093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1710c74985f6SBarry Smith } 1711c74985f6SBarry Smith 1712d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1713d71ae5a4SJacob Faibussowitsch { 1714154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171587828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1716d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1717d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1718b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 171939e00950SLois Curfman McInnes 17203a40ed3dSBarry Smith PetscFunctionBegin; 172128b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17227a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17237a0afa10SBarry Smith 172470f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17257a0afa10SBarry Smith /* 17267a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17277a0afa10SBarry Smith */ 17287a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1729b1d57f15SBarry Smith PetscInt max = 1, tmp; 1730d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17317a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17322205254eSKarl Rupp if (max < tmp) max = tmp; 17337a0afa10SBarry Smith } 17349566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17357a0afa10SBarry Smith } 17367a0afa10SBarry Smith 1737aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1738abc0e9e4SLois Curfman McInnes lrow = row - rstart; 173939e00950SLois Curfman McInnes 17409371c9d4SSatish Balay pvA = &vworkA; 17419371c9d4SSatish Balay pcA = &cworkA; 17429371c9d4SSatish Balay pvB = &vworkB; 17439371c9d4SSatish Balay pcB = &cworkB; 17449371c9d4SSatish Balay if (!v) { 17459371c9d4SSatish Balay pvA = NULL; 17469371c9d4SSatish Balay pvB = NULL; 17479371c9d4SSatish Balay } 17489371c9d4SSatish Balay if (!idx) { 17499371c9d4SSatish Balay pcA = NULL; 17509371c9d4SSatish Balay if (!v) pcB = NULL; 17519371c9d4SSatish Balay } 17529566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17539566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1754154123eaSLois Curfman McInnes nztot = nzA + nzB; 1755154123eaSLois Curfman McInnes 175670f0671dSBarry Smith cmap = mat->garray; 1757154123eaSLois Curfman McInnes if (v || idx) { 1758154123eaSLois Curfman McInnes if (nztot) { 1759154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1760b1d57f15SBarry Smith PetscInt imark = -1; 1761154123eaSLois Curfman McInnes if (v) { 176270f0671dSBarry Smith *v = v_p = mat->rowvalues; 176339e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176470f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1765154123eaSLois Curfman McInnes else break; 1766154123eaSLois Curfman McInnes } 1767154123eaSLois Curfman McInnes imark = i; 176870f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 176970f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1770154123eaSLois Curfman McInnes } 1771154123eaSLois Curfman McInnes if (idx) { 177270f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177370f0671dSBarry Smith if (imark > -1) { 1774ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177570f0671dSBarry Smith } else { 1776154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177770f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1778154123eaSLois Curfman McInnes else break; 1779154123eaSLois Curfman McInnes } 1780154123eaSLois Curfman McInnes imark = i; 178170f0671dSBarry Smith } 178270f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178370f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178439e00950SLois Curfman McInnes } 17853f97c4b0SBarry Smith } else { 1786f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1787f4259b30SLisandro Dalcin if (v) *v = NULL; 17881ca473b0SSatish Balay } 1789154123eaSLois Curfman McInnes } 179039e00950SLois Curfman McInnes *nz = nztot; 17919566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17929566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179439e00950SLois Curfman McInnes } 179539e00950SLois Curfman McInnes 1796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1797d71ae5a4SJacob Faibussowitsch { 17987a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 17993a40ed3dSBarry Smith 18003a40ed3dSBarry Smith PetscFunctionBegin; 180128b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18027a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180439e00950SLois Curfman McInnes } 180539e00950SLois Curfman McInnes 1806ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1807d71ae5a4SJacob Faibussowitsch { 1808855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1809ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1810d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1811329f5518SBarry Smith PetscReal sum = 0.0; 1812fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181304ca555eSLois Curfman McInnes 18143a40ed3dSBarry Smith PetscFunctionBegin; 181517699dbbSLois Curfman McInnes if (aij->size == 1) { 18169566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181737fa93a5SLois Curfman McInnes } else { 18189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 182004ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1821fff043a9SJunchao Zhang v = amata; 182204ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18239371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18249371c9d4SSatish Balay v++; 182504ca555eSLois Curfman McInnes } 1826fff043a9SJunchao Zhang v = bmata; 182704ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18289371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18299371c9d4SSatish Balay v++; 183004ca555eSLois Curfman McInnes } 1831462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18328f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18339566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18343a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1835e91c04dfSPierre Jolivet PetscReal *tmp; 1836b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18379566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 183804ca555eSLois Curfman McInnes *norm = 0.0; 18399371c9d4SSatish Balay v = amata; 18409371c9d4SSatish Balay jj = amat->j; 184104ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18429371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18439371c9d4SSatish Balay v++; 184404ca555eSLois Curfman McInnes } 18459371c9d4SSatish Balay v = bmata; 18469371c9d4SSatish Balay jj = bmat->j; 184704ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18489371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18499371c9d4SSatish Balay v++; 185004ca555eSLois Curfman McInnes } 1851e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1852d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 1853e91c04dfSPierre Jolivet if (tmp[j] > *norm) *norm = tmp[j]; 185404ca555eSLois Curfman McInnes } 18559566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18569566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18573a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1858329f5518SBarry Smith PetscReal ntemp = 0.0; 1859d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18608e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186104ca555eSLois Curfman McInnes sum = 0.0; 186204ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18639371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18649371c9d4SSatish Balay v++; 186504ca555eSLois Curfman McInnes } 18668e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186704ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18689371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18699371c9d4SSatish Balay v++; 187004ca555eSLois Curfman McInnes } 1871515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187204ca555eSLois Curfman McInnes } 1873462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18749566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1875ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187837fa93a5SLois Curfman McInnes } 18793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1880855ac2c5SLois Curfman McInnes } 1881855ac2c5SLois Curfman McInnes 1882ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1883d71ae5a4SJacob Faibussowitsch { 1884a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1885a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1886071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1887071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1888a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1889ce496241SStefano Zampini const MatScalar *pbv, *bv; 1890b7c46309SBarry Smith 18913a40ed3dSBarry Smith PetscFunctionBegin; 18927fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18939371c9d4SSatish Balay ma = A->rmap->n; 18949371c9d4SSatish Balay na = A->cmap->n; 18959371c9d4SSatish Balay mb = a->B->rmap->n; 18969371c9d4SSatish Balay nb = a->B->cmap->n; 18979371c9d4SSatish Balay ai = Aloc->i; 18989371c9d4SSatish Balay aj = Aloc->j; 18999371c9d4SSatish Balay bi = Bloc->i; 19009371c9d4SSatish Balay bj = Bloc->j; 1901fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190280bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190380bcc5a1SJed Brown PetscSFNode *oloc; 1904713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190580bcc5a1SJed Brown 19069566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190780bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19089566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1909cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191080bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19119566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191280bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191380bcc5a1SJed Brown /* map those to global */ 19149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19169566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19179566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191857168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 191957168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19209566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1921d4bb536fSBarry Smith 19229566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 192458b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs)); 19259566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19269566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19279566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1928fc4dec0aSBarry Smith } else { 1929fc4dec0aSBarry Smith B = *matout; 19309566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1931fc4dec0aSBarry Smith } 1932b7c46309SBarry Smith 1933f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1934a8661f62Sandi selinger A_diag = a->A; 1935a8661f62Sandi selinger B_diag = &b->A; 1936a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1937a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1938a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1939a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1940f79cb1a0Sandi selinger 1941f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1942ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1943f79cb1a0Sandi selinger 19444cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1945a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19467fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19479566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1948f79cb1a0Sandi selinger 1949b7c46309SBarry Smith /* copy over the B part */ 19509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1952ce496241SStefano Zampini pbv = bv; 1953d0f46423SBarry Smith row = A->rmap->rstart; 19542205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195561a2fbbaSHong Zhang cols_tmp = cols; 1956da668accSHong Zhang for (i = 0; i < mb; i++) { 1957da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19589566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19592205254eSKarl Rupp row++; 1960720a2405SPierre Jolivet if (pbv) pbv += ncol; 1961720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1962b7c46309SBarry Smith } 19639566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1965fc73b1b3SBarry Smith 19669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1968cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19690de55854SLois Curfman McInnes *matout = B; 19700de55854SLois Curfman McInnes } else { 19719566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19720de55854SLois Curfman McInnes } 19733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1974b7c46309SBarry Smith } 1975b7c46309SBarry Smith 1976ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1977d71ae5a4SJacob Faibussowitsch { 19784b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19794b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1980b1d57f15SBarry Smith PetscInt s1, s2, s3; 1981a008b906SSatish Balay 19823a40ed3dSBarry Smith PetscFunctionBegin; 19839566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19844b967eb1SSatish Balay if (rr) { 19859566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198608401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19874b967eb1SSatish Balay /* Overlap communication with computation. */ 19889566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1989a008b906SSatish Balay } 19904b967eb1SSatish Balay if (ll) { 19919566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199208401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1993dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19944b967eb1SSatish Balay } 19954b967eb1SSatish Balay /* scale the diagonal block */ 1996dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19974b967eb1SSatish Balay 19984b967eb1SSatish Balay if (rr) { 19994b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20009566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2001dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20024b967eb1SSatish Balay } 20033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2004a008b906SSatish Balay } 2005a008b906SSatish Balay 2006ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2007d71ae5a4SJacob Faibussowitsch { 2008bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20093a40ed3dSBarry Smith 20103a40ed3dSBarry Smith PetscFunctionBegin; 20119566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2013bb5a7306SBarry Smith } 2014bb5a7306SBarry Smith 2015ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2016d71ae5a4SJacob Faibussowitsch { 2017d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2018d4bb536fSBarry Smith Mat a, b, c, d; 2019ace3abfcSBarry Smith PetscBool flg; 2020d4bb536fSBarry Smith 20213a40ed3dSBarry Smith PetscFunctionBegin; 20229371c9d4SSatish Balay a = matA->A; 20239371c9d4SSatish Balay b = matA->B; 20249371c9d4SSatish Balay c = matB->A; 20259371c9d4SSatish Balay d = matB->B; 2026d4bb536fSBarry Smith 20279566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202848a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 2029*5440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2031d4bb536fSBarry Smith } 2032d4bb536fSBarry Smith 2033ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2034d71ae5a4SJacob Faibussowitsch { 2035cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2036cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2037cb5b572fSBarry Smith 2038cb5b572fSBarry Smith PetscFunctionBegin; 203933f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204033f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2041cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2042cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2043cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2044cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2045cb5b572fSBarry Smith then copying the submatrices */ 20469566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2047cb5b572fSBarry Smith } else { 20489566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20499566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2050cb5b572fSBarry Smith } 20519566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2053cb5b572fSBarry Smith } 2054cb5b572fSBarry Smith 2055001ddc4fSHong Zhang /* 2056001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2057001ddc4fSHong Zhang have different nonzero structure. 2058001ddc4fSHong Zhang */ 2059d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2060d71ae5a4SJacob Faibussowitsch { 2061001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206295b7e79eSJed Brown 206395b7e79eSJed Brown PetscFunctionBegin; 206495b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206595b7e79eSJed Brown for (i = 0; i < m; i++) { 20668e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2067001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2068001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 206995b7e79eSJed Brown nnz[i] = 0; 207095b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2071001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2072001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207395b7e79eSJed Brown nnz[i]++; 207495b7e79eSJed Brown } 207595b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207695b7e79eSJed Brown } 20773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207895b7e79eSJed Brown } 207995b7e79eSJed Brown 2080001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2081d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2082d71ae5a4SJacob Faibussowitsch { 2083001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2084001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2085001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2086001ddc4fSHong Zhang 2087001ddc4fSHong Zhang PetscFunctionBegin; 20889566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2090001ddc4fSHong Zhang } 2091001ddc4fSHong Zhang 2092ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2093d71ae5a4SJacob Faibussowitsch { 2094ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2095ac90fabeSBarry Smith 2096ac90fabeSBarry Smith PetscFunctionBegin; 2097ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20989566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 20999566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2100ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21019566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2102ac90fabeSBarry Smith } else { 21039f5f6813SShri Abhyankar Mat B; 21049f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2105d9d719b4SStefano Zampini 21069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21099566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21109566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21119566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21129566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21139566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21149566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21159566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21169566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21179566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21189566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2119ac90fabeSBarry Smith } 21203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2121ac90fabeSBarry Smith } 2122ac90fabeSBarry Smith 21232726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2124354c94deSBarry Smith 2125ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2126d71ae5a4SJacob Faibussowitsch { 21275f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21285f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2129354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2130354c94deSBarry Smith 21319566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21329566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21335f80ce2aSJacob Faibussowitsch } 21343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2135354c94deSBarry Smith } 2136354c94deSBarry Smith 2137ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2138d71ae5a4SJacob Faibussowitsch { 213999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214099cafbc1SBarry Smith 214199cafbc1SBarry Smith PetscFunctionBegin; 21429566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21439566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214599cafbc1SBarry Smith } 214699cafbc1SBarry Smith 2147ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2148d71ae5a4SJacob Faibussowitsch { 214999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215099cafbc1SBarry Smith 215199cafbc1SBarry Smith PetscFunctionBegin; 21529566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21539566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215599cafbc1SBarry Smith } 215699cafbc1SBarry Smith 2157ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2158d71ae5a4SJacob Faibussowitsch { 2159c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2160475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 216162e5df07SMark Adams PetscScalar *vv; 2162475b8b61SHong Zhang Vec vB, vA; 216362e5df07SMark Adams const PetscScalar *va, *vb; 2164c91732d9SHong Zhang 2165c91732d9SHong Zhang PetscFunctionBegin; 2166c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2168475b8b61SHong Zhang 216962e5df07SMark Adams PetscCall(VecGetArrayRead(vA, &va)); 2170c91732d9SHong Zhang if (idx) { 2171475b8b61SHong Zhang for (i = 0; i < m; i++) { 2172d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2173c91732d9SHong Zhang } 2174c91732d9SHong Zhang } 2175c91732d9SHong Zhang 2176c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2179c91732d9SHong Zhang 21809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2182475b8b61SHong Zhang for (i = 0; i < m; i++) { 2183c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2184475b8b61SHong Zhang vv[i] = vb[i]; 2185c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2186475b8b61SHong Zhang } else { 2187475b8b61SHong Zhang vv[i] = va[i]; 21889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2189c91732d9SHong Zhang } 2190c91732d9SHong Zhang } 219162e5df07SMark Adams PetscCall(VecRestoreArrayWrite(v, &vv)); 219262e5df07SMark Adams PetscCall(VecRestoreArrayRead(vA, &va)); 21939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2198c91732d9SHong Zhang } 2199c91732d9SHong Zhang 2200eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2201eede4a3fSMark Adams { 2202eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2203eede4a3fSMark Adams Vec vB, vA; 2204eede4a3fSMark Adams 2205eede4a3fSMark Adams PetscFunctionBegin; 2206c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2207eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2208c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2209eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2210eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2211eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2212eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2213eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2214eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2215eede4a3fSMark Adams } 2216eede4a3fSMark Adams 2217ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2218d71ae5a4SJacob Faibussowitsch { 2219f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2220f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2221f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2222f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2223f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2224f07e67edSHong Zhang Vec diagV, offdiagV; 2225ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2226ce496241SStefano Zampini const PetscScalar *ba, *bav; 2227f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2228f07e67edSHong Zhang Mat B = mat->B; 2229f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2230c87e5d42SMatthew Knepley 2231c87e5d42SMatthew Knepley PetscFunctionBegin; 2232f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2233f07e67edSHong Zhang if (A->cmap->N == n) { 22349566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22359566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22369566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22379566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2240f07e67edSHong Zhang } else if (n == 0) { 2241f07e67edSHong Zhang if (m) { 22429566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22439371c9d4SSatish Balay for (r = 0; r < m; r++) { 22449371c9d4SSatish Balay a[r] = 0.0; 22459371c9d4SSatish Balay if (idx) idx[r] = -1; 22469371c9d4SSatish Balay } 22479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2248f07e67edSHong Zhang } 22493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2250f07e67edSHong Zhang } 2251f07e67edSHong Zhang 22529566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22539566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22549566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22559566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2256f07e67edSHong Zhang 2257f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2259ce496241SStefano Zampini ba = bav; 2260f07e67edSHong Zhang bi = b->i; 2261f07e67edSHong Zhang bj = b->j; 22629566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2263f07e67edSHong Zhang for (r = 0; r < m; r++) { 2264f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2265f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22669371c9d4SSatish Balay offdiagA[r] = *ba; 22679371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2268f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2269f07e67edSHong Zhang offdiagA[r] = 0.0; 2270f07e67edSHong Zhang 2271f07e67edSHong Zhang /* Find first hole in the cmap */ 2272f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2273f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2274f07e67edSHong Zhang if (col > j && j < cstart) { 2275f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2276f07e67edSHong Zhang break; 2277f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2278f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2279f07e67edSHong Zhang break; 2280f07e67edSHong Zhang } 2281f07e67edSHong Zhang } 22824e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2283f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2284f07e67edSHong Zhang if (ncols == 0) { 2285f07e67edSHong Zhang if (cstart) { 2286f07e67edSHong Zhang offdiagIdx[r] = 0; 2287f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2288f07e67edSHong Zhang } else { /* ncols > 0 */ 2289f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2290f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2291f07e67edSHong Zhang } 2292f07e67edSHong Zhang } 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang 2295f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22969371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22979371c9d4SSatish Balay offdiagA[r] = *ba; 22989371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 22999371c9d4SSatish Balay } 23009371c9d4SSatish Balay ba++; 23019371c9d4SSatish Balay bj++; 2302f07e67edSHong Zhang } 2303f07e67edSHong Zhang } 2304f07e67edSHong Zhang 23059566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23069566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2307f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2308f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2309f07e67edSHong Zhang a[r] = diagA[r]; 2310f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2311f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2312f07e67edSHong Zhang a[r] = diagA[r]; 2313c87e5d42SMatthew Knepley if (idx) { 2314f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2315f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2316f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2317f07e67edSHong Zhang } 2318f07e67edSHong Zhang } else { 2319f07e67edSHong Zhang a[r] = offdiagA[r]; 2320f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2321c87e5d42SMatthew Knepley } 2322c87e5d42SMatthew Knepley } 23239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23249566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23279566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23299566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2331c87e5d42SMatthew Knepley } 2332c87e5d42SMatthew Knepley 2333ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2334d71ae5a4SJacob Faibussowitsch { 233503bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2336fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2337fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233803bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 233903bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234003bc72f1SMatthew Knepley Vec diagV, offdiagV; 2341ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2342ce496241SStefano Zampini const PetscScalar *ba, *bav; 2343fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2344fa213d2fSHong Zhang Mat B = mat->B; 2345fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234603bc72f1SMatthew Knepley 234703bc72f1SMatthew Knepley PetscFunctionBegin; 2348fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2349fa213d2fSHong Zhang if (A->cmap->N == n) { 23509566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23519566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23529566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23549566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2356fa213d2fSHong Zhang } else if (n == 0) { 2357fa213d2fSHong Zhang if (m) { 23589566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23599371c9d4SSatish Balay for (r = 0; r < m; r++) { 23609371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23619371c9d4SSatish Balay if (idx) idx[r] = -1; 23629371c9d4SSatish Balay } 23639566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2364fa213d2fSHong Zhang } 23653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2366fa213d2fSHong Zhang } 2367fa213d2fSHong Zhang 23689566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23699566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23709566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23719566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2372fa213d2fSHong Zhang 2373fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2375ce496241SStefano Zampini ba = bav; 2376fa213d2fSHong Zhang bi = b->i; 2377fa213d2fSHong Zhang bj = b->j; 23789566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2379fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2380fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2381fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23829371c9d4SSatish Balay offdiagA[r] = *ba; 23839371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2384fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2385fa213d2fSHong Zhang offdiagA[r] = 0.0; 2386fa213d2fSHong Zhang 2387fa213d2fSHong Zhang /* Find first hole in the cmap */ 2388fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2389fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2390fa213d2fSHong Zhang if (col > j && j < cstart) { 2391fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2392fa213d2fSHong Zhang break; 2393fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2394fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2395fa213d2fSHong Zhang break; 2396fa213d2fSHong Zhang } 2397fa213d2fSHong Zhang } 23984e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2399fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2400fa213d2fSHong Zhang if (ncols == 0) { 2401fa213d2fSHong Zhang if (cstart) { 2402fa213d2fSHong Zhang offdiagIdx[r] = 0; 2403fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2404fa213d2fSHong Zhang } else { /* ncols > 0 */ 2405fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2406fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2407fa213d2fSHong Zhang } 2408fa213d2fSHong Zhang } 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang 2411fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24129371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24139371c9d4SSatish Balay offdiagA[r] = *ba; 24149371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24159371c9d4SSatish Balay } 24169371c9d4SSatish Balay ba++; 24179371c9d4SSatish Balay bj++; 2418fa213d2fSHong Zhang } 2419fa213d2fSHong Zhang } 2420fa213d2fSHong Zhang 24219566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24229566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2423fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2424fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242503bc72f1SMatthew Knepley a[r] = diagA[r]; 2426fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2427fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2428fa213d2fSHong Zhang a[r] = diagA[r]; 2429fa213d2fSHong Zhang if (idx) { 2430fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243103bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2432fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2433fa213d2fSHong Zhang } 243403bc72f1SMatthew Knepley } else { 243503bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2436fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243703bc72f1SMatthew Knepley } 243803bc72f1SMatthew Knepley } 24399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24459566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244703bc72f1SMatthew Knepley } 244803bc72f1SMatthew Knepley 2449ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2450d71ae5a4SJacob Faibussowitsch { 2451c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24521a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24531a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2454c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2455c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2456c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2457ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2458ce496241SStefano Zampini const PetscScalar *ba, *bav; 24591a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24601a254869SHong Zhang Mat B = mat->B; 24611a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2462c87e5d42SMatthew Knepley 2463c87e5d42SMatthew Knepley PetscFunctionBegin; 24641a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24651a254869SHong Zhang if (A->cmap->N == n) { 24669566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24679566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24689566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24709566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24721a254869SHong Zhang } else if (n == 0) { 24731a254869SHong Zhang if (m) { 24749566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24759371c9d4SSatish Balay for (r = 0; r < m; r++) { 24769371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24779371c9d4SSatish Balay if (idx) idx[r] = -1; 24789371c9d4SSatish Balay } 24799566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24801a254869SHong Zhang } 24813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24821a254869SHong Zhang } 24831a254869SHong Zhang 24849566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24859566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24869566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24879566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24881a254869SHong Zhang 24891a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2491ce496241SStefano Zampini ba = bav; 24921a254869SHong Zhang bi = b->i; 24931a254869SHong Zhang bj = b->j; 24949566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24951a254869SHong Zhang for (r = 0; r < m; r++) { 24961a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24971a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24989371c9d4SSatish Balay offdiagA[r] = *ba; 24999371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25001a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25011a254869SHong Zhang offdiagA[r] = 0.0; 25021a254869SHong Zhang 25031a254869SHong Zhang /* Find first hole in the cmap */ 25041a254869SHong Zhang for (j = 0; j < ncols; j++) { 25051a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25061a254869SHong Zhang if (col > j && j < cstart) { 25071a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25081a254869SHong Zhang break; 25091a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25101a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25111a254869SHong Zhang break; 25121a254869SHong Zhang } 25131a254869SHong Zhang } 25144e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25151a254869SHong Zhang /* a hole is outside compressed Bcols */ 25161a254869SHong Zhang if (ncols == 0) { 25171a254869SHong Zhang if (cstart) { 25181a254869SHong Zhang offdiagIdx[r] = 0; 25191a254869SHong Zhang } else offdiagIdx[r] = cend; 25201a254869SHong Zhang } else { /* ncols > 0 */ 25211a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25221a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25231a254869SHong Zhang } 25241a254869SHong Zhang } 25251a254869SHong Zhang } 25261a254869SHong Zhang 25271a254869SHong Zhang for (j = 0; j < ncols; j++) { 25289371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25299371c9d4SSatish Balay offdiagA[r] = *ba; 25309371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25319371c9d4SSatish Balay } 25329371c9d4SSatish Balay ba++; 25339371c9d4SSatish Balay bj++; 25341a254869SHong Zhang } 25351a254869SHong Zhang } 25361a254869SHong Zhang 25379566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25389566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25391a254869SHong Zhang for (r = 0; r < m; ++r) { 25401a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2541c87e5d42SMatthew Knepley a[r] = diagA[r]; 25421a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25431a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25441a254869SHong Zhang a[r] = diagA[r]; 25451a254869SHong Zhang if (idx) { 25461a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2547c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25481a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25491a254869SHong Zhang } 2550c87e5d42SMatthew Knepley } else { 2551c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25521a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2553c87e5d42SMatthew Knepley } 2554c87e5d42SMatthew Knepley } 25559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25569566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25619566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2563c87e5d42SMatthew Knepley } 2564c87e5d42SMatthew Knepley 2565d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2566d71ae5a4SJacob Faibussowitsch { 2567f6d58c54SBarry Smith Mat *dummy; 25685494a064SHong Zhang 25695494a064SHong Zhang PetscFunctionBegin; 25709566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2571f6d58c54SBarry Smith *newmat = *dummy; 25729566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25745494a064SHong Zhang } 25755494a064SHong Zhang 2576ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2577d71ae5a4SJacob Faibussowitsch { 2578bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2579bbead8a2SBarry Smith 2580bbead8a2SBarry Smith PetscFunctionBegin; 25819566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25827b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2584bbead8a2SBarry Smith } 2585bbead8a2SBarry Smith 2586d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2587d71ae5a4SJacob Faibussowitsch { 258873a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 258973a71a0fSBarry Smith 259073a71a0fSBarry Smith PetscFunctionBegin; 259108401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25929566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2593679944adSJunchao Zhang if (x->assembled) { 25949566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2595679944adSJunchao Zhang } else { 25969566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2597679944adSJunchao Zhang } 25989566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 25999566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260173a71a0fSBarry Smith } 2602bbead8a2SBarry Smith 2603ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2604d71ae5a4SJacob Faibussowitsch { 2605b1b1104fSBarry Smith PetscFunctionBegin; 2606b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2607b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2609b1b1104fSBarry Smith } 2610b1b1104fSBarry Smith 2611b1b1104fSBarry Smith /*@ 2612f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2613f2afee66SBarry Smith 26142ef1f0ffSBarry Smith Not Collective 2615f2afee66SBarry Smith 2616f2afee66SBarry Smith Input Parameter: 2617f2afee66SBarry Smith . A - the matrix 2618f2afee66SBarry Smith 2619f2afee66SBarry Smith Output Parameter: 2620f2afee66SBarry Smith . nz - the number of nonzeros 2621f2afee66SBarry Smith 2622f2afee66SBarry Smith Level: advanced 2623f2afee66SBarry Smith 2624fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2625f2afee66SBarry Smith @*/ 2626d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2627d71ae5a4SJacob Faibussowitsch { 2628f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2629f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2630dfebb78cSStefano Zampini PetscBool isaij; 2631f2afee66SBarry Smith 2632f2afee66SBarry Smith PetscFunctionBegin; 2633dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2634dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2635f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2637f2afee66SBarry Smith } 2638f2afee66SBarry Smith 2639f2afee66SBarry Smith /*@ 2640b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2641b1b1104fSBarry Smith 2642c3339decSBarry Smith Collective 2643b1b1104fSBarry Smith 2644b1b1104fSBarry Smith Input Parameters: 2645b1b1104fSBarry Smith + A - the matrix 264611a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2647b1b1104fSBarry Smith 264896a0c994SBarry Smith Level: advanced 264996a0c994SBarry Smith 2650fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2651b1b1104fSBarry Smith @*/ 2652d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2653d71ae5a4SJacob Faibussowitsch { 2654b1b1104fSBarry Smith PetscFunctionBegin; 2655cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2657b1b1104fSBarry Smith } 2658b1b1104fSBarry Smith 2659ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject) 2660d71ae5a4SJacob Faibussowitsch { 2661b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2662b1b1104fSBarry Smith 2663b1b1104fSBarry Smith PetscFunctionBegin; 2664d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2665b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26669566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26671baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2668d0609cedSBarry Smith PetscOptionsHeadEnd(); 26693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2670b1b1104fSBarry Smith } 2671b1b1104fSBarry Smith 2672ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2673d71ae5a4SJacob Faibussowitsch { 26747d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2675c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26767d68702bSBarry Smith 26777d68702bSBarry Smith PetscFunctionBegin; 2678c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26799566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26805519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2681b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26829566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2683b83222d8SBarry Smith aij->nonew = nonew; 26847d68702bSBarry Smith } 26859566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26877d68702bSBarry Smith } 26887d68702bSBarry Smith 2689ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2690d71ae5a4SJacob Faibussowitsch { 26913b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26923b49f96aSBarry Smith 26933b49f96aSBarry Smith PetscFunctionBegin; 269408401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26959566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26963b49f96aSBarry Smith if (d) { 26973b49f96aSBarry Smith PetscInt rstart; 26989566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 26993b49f96aSBarry Smith *d += rstart; 27003b49f96aSBarry Smith } 27013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27023b49f96aSBarry Smith } 27033b49f96aSBarry Smith 2704ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2705d71ae5a4SJacob Faibussowitsch { 2706a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2707a8ee9fb5SBarry Smith 2708a8ee9fb5SBarry Smith PetscFunctionBegin; 27099566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2711a8ee9fb5SBarry Smith } 27123b49f96aSBarry Smith 271358c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2714dec0b466SHong Zhang { 2715dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2716dec0b466SHong Zhang 2717dec0b466SHong Zhang PetscFunctionBegin; 271858c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 271958c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2721dec0b466SHong Zhang } 2722dec0b466SHong Zhang 2723cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2724cda55fadSBarry Smith MatGetRow_MPIAIJ, 2725cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2726cda55fadSBarry Smith MatMult_MPIAIJ, 272797304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27287c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27297c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2730f4259b30SLisandro Dalcin NULL, 2731f4259b30SLisandro Dalcin NULL, 2732f4259b30SLisandro Dalcin NULL, 2733f4259b30SLisandro Dalcin /*10*/ NULL, 2734f4259b30SLisandro Dalcin NULL, 2735f4259b30SLisandro Dalcin NULL, 273641f059aeSBarry Smith MatSOR_MPIAIJ, 2737b7c46309SBarry Smith MatTranspose_MPIAIJ, 273897304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2739cda55fadSBarry Smith MatEqual_MPIAIJ, 2740cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2741cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2742cda55fadSBarry Smith MatNorm_MPIAIJ, 274397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2744cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2745cda55fadSBarry Smith MatSetOption_MPIAIJ, 2746cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2747d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2748f4259b30SLisandro Dalcin NULL, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 275226cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2753f4259b30SLisandro Dalcin NULL, 2754f4259b30SLisandro Dalcin NULL, 2755a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2756f4259b30SLisandro Dalcin NULL, 2757d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2758f4259b30SLisandro Dalcin NULL, 2759f4259b30SLisandro Dalcin NULL, 2760f4259b30SLisandro Dalcin NULL, 2761f4259b30SLisandro Dalcin NULL, 2762d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27637dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2764cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2765cda55fadSBarry Smith MatGetValues_MPIAIJ, 2766cb5b572fSBarry Smith MatCopy_MPIAIJ, 2767d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2768cda55fadSBarry Smith MatScale_MPIAIJ, 27697d68702bSBarry Smith MatShift_MPIAIJ, 277099e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2771564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 277273a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27738a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27748a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2775f4259b30SLisandro Dalcin NULL, 2776f4259b30SLisandro Dalcin NULL, 277793dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2778f4259b30SLisandro Dalcin NULL, 2779cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 278072e6a0cfSJed Brown MatPermute_MPIAIJ, 2781f4259b30SLisandro Dalcin NULL, 27827dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2783e03a110bSBarry Smith MatDestroy_MPIAIJ, 2784e03a110bSBarry Smith MatView_MPIAIJ, 2785f4259b30SLisandro Dalcin NULL, 2786f4259b30SLisandro Dalcin NULL, 27878bb0f5c6SPierre Jolivet /*64*/ MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2788f4259b30SLisandro Dalcin NULL, 2789f4259b30SLisandro Dalcin NULL, 2790f4259b30SLisandro Dalcin NULL, 27918bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPIAIJ, 27928bb0f5c6SPierre Jolivet /*69*/ MatGetRowMinAbs_MPIAIJ, 2793f4259b30SLisandro Dalcin NULL, 2794f4259b30SLisandro Dalcin NULL, 27958bb0f5c6SPierre Jolivet MatFDColoringApply_AIJ, 2796b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2797f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 27988bb0f5c6SPierre Jolivet /*75*/ NULL, 27998bb0f5c6SPierre Jolivet NULL, 28008bb0f5c6SPierre Jolivet NULL, 28018bb0f5c6SPierre Jolivet MatLoad_MPIAIJ, 28028bb0f5c6SPierre Jolivet NULL, 2803f4259b30SLisandro Dalcin /*80*/ NULL, 2804f4259b30SLisandro Dalcin NULL, 2805f4259b30SLisandro Dalcin NULL, 28068bb0f5c6SPierre Jolivet /*83*/ NULL, 2807f4259b30SLisandro Dalcin NULL, 280826be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 28098bb0f5c6SPierre Jolivet MatPtAPNumeric_MPIAIJ_MPIAIJ, 2810f4259b30SLisandro Dalcin NULL, 2811f4259b30SLisandro Dalcin NULL, 28128bb0f5c6SPierre Jolivet /*89*/ MatBindToCPU_MPIAIJ, 28138bb0f5c6SPierre Jolivet MatProductSetFromOptions_MPIAIJ, 2814f4259b30SLisandro Dalcin NULL, 2815f4259b30SLisandro Dalcin NULL, 28162fd7e33dSBarry Smith MatConjugate_MPIAIJ, 28178bb0f5c6SPierre Jolivet /*94*/ NULL, 28188bb0f5c6SPierre Jolivet MatSetValuesRow_MPIAIJ, 281999cafbc1SBarry Smith MatRealPart_MPIAIJ, 282069db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2821f4259b30SLisandro Dalcin NULL, 28228bb0f5c6SPierre Jolivet /*99*/ NULL, 2823f4259b30SLisandro Dalcin NULL, 2824f4259b30SLisandro Dalcin NULL, 28255494a064SHong Zhang MatGetRowMin_MPIAIJ, 2826f4259b30SLisandro Dalcin NULL, 28278bb0f5c6SPierre Jolivet /*104*/ MatMissingDiagonal_MPIAIJ, 28288bb0f5c6SPierre Jolivet MatGetSeqNonzeroStructure_MPIAIJ, 2829f4259b30SLisandro Dalcin NULL, 2830c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2831f4259b30SLisandro Dalcin NULL, 28328bb0f5c6SPierre Jolivet /*109*/ NULL, 28338bb0f5c6SPierre Jolivet MatMultDiagonalBlock_MPIAIJ, 2834f4259b30SLisandro Dalcin NULL, 2835f4259b30SLisandro Dalcin NULL, 2836f4259b30SLisandro Dalcin NULL, 28378bb0f5c6SPierre Jolivet /*114*/ MatGetMultiProcBlock_MPIAIJ, 28388bb0f5c6SPierre Jolivet MatFindNonzeroRows_MPIAIJ, 2839a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2840bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2841a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28428bb0f5c6SPierre Jolivet /*119*/ MatCreateSubMatricesMPI_MPIAIJ, 2843f4259b30SLisandro Dalcin NULL, 2844f4259b30SLisandro Dalcin NULL, 2845187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2846f4259b30SLisandro Dalcin NULL, 28478bb0f5c6SPierre Jolivet /*124*/ NULL, 2848f4259b30SLisandro Dalcin NULL, 2849f4259b30SLisandro Dalcin NULL, 28508bb0f5c6SPierre Jolivet MatSetBlockSizes_MPIAIJ, 2851f4259b30SLisandro Dalcin NULL, 28528bb0f5c6SPierre Jolivet /*129*/ MatFDColoringSetUp_MPIXAIJ, 2853a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28544222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2855f4259b30SLisandro Dalcin NULL, 285672833a62Smarkadams4 NULL, 28578bb0f5c6SPierre Jolivet /*134*/ NULL, 285872833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28592d776b49SBarry Smith NULL, 2860eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28614cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 28628bb0f5c6SPierre Jolivet /*139*/ NULL, 286342ce410bSJunchao Zhang NULL, 286442ce410bSJunchao Zhang NULL, 286503db1824SAlex Lindsay MatCopyHashToXAIJ_MPI_Hash, 286603db1824SAlex Lindsay MatGetCurrentMemType_MPIAIJ}; 286736ce4990SBarry Smith 2868ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2869d71ae5a4SJacob Faibussowitsch { 28702e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28712e8a6d31SBarry Smith 28722e8a6d31SBarry Smith PetscFunctionBegin; 28739566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28749566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28762e8a6d31SBarry Smith } 28772e8a6d31SBarry Smith 2878ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2879d71ae5a4SJacob Faibussowitsch { 28802e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28812e8a6d31SBarry Smith 28822e8a6d31SBarry Smith PetscFunctionBegin; 28839566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28849566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28862e8a6d31SBarry Smith } 28878a729477SBarry Smith 2888d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2889d71ae5a4SJacob Faibussowitsch { 2890ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 28915d2a9ed1SStefano Zampini PetscMPIInt size; 2892a23d5eceSKris Buschelman 2893a23d5eceSKris Buschelman PetscFunctionBegin; 2894ad79cf63SBarry Smith if (B->hash_active) { 2895aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2896ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2897ad79cf63SBarry Smith } 28989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 28999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2900899cda47SBarry Smith 2901cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2902eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2903cb7b82ddSBarry Smith #else 29049566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2905cb7b82ddSBarry Smith #endif 29069566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29079566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29089566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2909cb7b82ddSBarry Smith 29109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2911c508b908SBarry Smith 2912c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29139566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29149566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29169566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29179566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2918c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2919cb7b82ddSBarry Smith 2920c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2921ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29229566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29249566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29259566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2926c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2927899cda47SBarry Smith 29289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2930526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2931cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 293215001458SStefano Zampini B->assembled = PETSC_FALSE; 29333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2934a23d5eceSKris Buschelman } 2935a23d5eceSKris Buschelman 2936ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2937d71ae5a4SJacob Faibussowitsch { 2938ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29394c51d546SAlexander PetscBool ondiagreset, offdiagreset, memoryreset; 2940846b4da1SFande Kong 2941846b4da1SFande Kong PetscFunctionBegin; 2942846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29434c51d546SAlexander PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()"); 29444c51d546SAlexander if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS); 29454c51d546SAlexander 29464c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset)); 29474c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset)); 29484c51d546SAlexander memoryreset = (PetscBool)(ondiagreset || offdiagreset); 2949*5440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPI_C_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B))); 29504c51d546SAlexander if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS); 29514c51d546SAlexander 29529566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29539566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 29544c51d546SAlexander PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled"); 29554c51d546SAlexander PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE)); 29569566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2957846b4da1SFande Kong 2958846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2959846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2960846b4da1SFande Kong B->assembled = PETSC_FALSE; 2961b3a35320SAlex Lindsay /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */ 2962b3a35320SAlex Lindsay PetscCall(PetscObjectStateIncrease((PetscObject)B)); 29633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2964846b4da1SFande Kong } 2965846b4da1SFande Kong 2966d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2967d71ae5a4SJacob Faibussowitsch { 2968d6dfbf8fSBarry Smith Mat mat; 2969416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2970d6dfbf8fSBarry Smith 29713a40ed3dSBarry Smith PetscFunctionBegin; 2972f4259b30SLisandro Dalcin *newmat = NULL; 29739566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29749566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29759566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29769566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2977273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2978e1b6402fSHong Zhang 2979d5f3da31SBarry Smith mat->factortype = matin->factortype; 2980501880eeSStefano Zampini mat->assembled = matin->assembled; 2981e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2982d6dfbf8fSBarry Smith 298317699dbbSLois Curfman McInnes a->size = oldmat->size; 298417699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2985e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2986e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2987501880eeSStefano Zampini a->rowindices = NULL; 2988501880eeSStefano Zampini a->rowvalues = NULL; 2989bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2990d6dfbf8fSBarry Smith 29919566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29929566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2993420957c1SBarry Smith if (matin->hash_active) { 2994420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2995420957c1SBarry Smith } else { 2996420957c1SBarry Smith mat->preallocated = matin->preallocated; 29972ee70a88SLois Curfman McInnes if (oldmat->colmap) { 2998aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2999eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3000b1fc9764SSatish Balay #else 30019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30029566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3003b1fc9764SSatish Balay #endif 3004501880eeSStefano Zampini } else a->colmap = NULL; 30053f41c07dSBarry Smith if (oldmat->garray) { 3006b1d57f15SBarry Smith PetscInt len; 3007d0f46423SBarry Smith len = oldmat->B->cmap->n; 30089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30099566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3010501880eeSStefano Zampini } else a->garray = NULL; 3011d6dfbf8fSBarry Smith 30120de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30130de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30140de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3015aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3016cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3017cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3018cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3019cff58d65SJunchao Zhang } 30209566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30219566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3022420957c1SBarry Smith } 30239566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30248a729477SBarry Smith *newmat = mat; 30253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30268a729477SBarry Smith } 3027416022c9SBarry Smith 3028d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3029d71ae5a4SJacob Faibussowitsch { 303052f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 303152f91c60SVaclav Hapla 303252f91c60SVaclav Hapla PetscFunctionBegin; 303352f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 303452f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3035c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30369566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30379566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 303952f91c60SVaclav Hapla if (isbinary) { 30409566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 304152f91c60SVaclav Hapla } else if (ishdf5) { 304252f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30439566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 304452f91c60SVaclav Hapla #else 304552f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 304652f91c60SVaclav Hapla #endif 304752f91c60SVaclav Hapla } else { 304898921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 304952f91c60SVaclav Hapla } 30503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 305152f91c60SVaclav Hapla } 305252f91c60SVaclav Hapla 3053d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3054d71ae5a4SJacob Faibussowitsch { 30553ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30563ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30573ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30588fb81238SShri Abhyankar 30598fb81238SShri Abhyankar PetscFunctionBegin; 30609566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30618fb81238SShri Abhyankar 30623ea6fe3dSLisandro Dalcin /* read in matrix header */ 30639566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 306408401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30659371c9d4SSatish Balay M = header[1]; 30669371c9d4SSatish Balay N = header[2]; 30679371c9d4SSatish Balay nz = header[3]; 306808401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 306908401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 307008401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 307108ea439dSMark F. Adams 30723ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30739566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30743ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30753ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30763ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30789566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30798fb81238SShri Abhyankar 30803ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30819566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3082aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30838fb81238SShri Abhyankar 30843ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30859566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30879566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30889371c9d4SSatish Balay rowidxs[0] = 0; 30899371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 30901690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 3091462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 309208401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 309338b83642SBarry Smith } 309438b83642SBarry Smith 30953ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30969566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 30979566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 30989566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 30993ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31009566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31019566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31029566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31048fb81238SShri Abhyankar } 31058fb81238SShri Abhyankar 31063782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3107ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3108d71ae5a4SJacob Faibussowitsch { 31094aa3045dSJed Brown IS iscol_local; 3110c5e4d11fSDmitry Karpeev PetscBool isstride; 31119725ddffSPierre Jolivet PetscMPIInt gisstride = 0; 31123782ecc7SHong Zhang 31133782ecc7SHong Zhang PetscFunctionBegin; 31143782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31163782ecc7SHong Zhang 3117c5e4d11fSDmitry Karpeev if (isstride) { 3118c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31199566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31209566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31219566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 31229725ddffSPierre Jolivet if (mstart == start && mlen - mstart == len) gisstride = 1; 3123c5e4d11fSDmitry Karpeev } 31243782ecc7SHong Zhang 31259725ddffSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3126c5e4d11fSDmitry Karpeev if (gisstride) { 3127c5e4d11fSDmitry Karpeev PetscInt N; 31289566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31299566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31309566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31319566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3132c5e4d11fSDmitry Karpeev } else { 3133c5bfad50SMark F. Adams PetscInt cbs; 31349566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31359566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31369566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3137b79d0421SJed Brown } 31383782ecc7SHong Zhang 31393782ecc7SHong Zhang *isseq = iscol_local; 31403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3141c5e4d11fSDmitry Karpeev } 31428d2139bdSHong Zhang 3143ddfdf956SHong Zhang /* 31449c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31459c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3146ddfdf956SHong Zhang 3147ddfdf956SHong Zhang Input Parameters: 314827430b45SBarry Smith + mat - matrix 314927430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31509c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 315127430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3152ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 315327430b45SBarry Smith 315427430b45SBarry Smith Output Parameters: 315527430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 315627430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 315727430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 315827430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3159ddfdf956SHong Zhang */ 3160835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[]) 3161d71ae5a4SJacob Faibussowitsch { 3162040216a4SHong Zhang Vec x, cmap; 3163040216a4SHong Zhang const PetscInt *is_idx; 3164040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31659c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3166040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3167040216a4SHong Zhang Mat B = a->B; 3168040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3169a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31708b3fa1f7SHong Zhang MPI_Comm comm; 31713a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31723782ecc7SHong Zhang 31733782ecc7SHong Zhang PetscFunctionBegin; 31749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31768b3fa1f7SHong Zhang 3177ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31789566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31799566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31809566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31819566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31820a351717SHong Zhang 31839c988bcaSHong Zhang /* Get start indices */ 31849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3185ddfdf956SHong Zhang isstart -= ncols; 31869566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3187040216a4SHong Zhang 31889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31899566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31909566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3192ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31938b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3194ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31959c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31968b3fa1f7SHong Zhang } 31979566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 31989566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 31999566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32008b3fa1f7SHong Zhang 32019c988bcaSHong Zhang /* Get iscol_d */ 32029566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32039566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32049566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3205feb78a15SHong Zhang 32069c988bcaSHong Zhang /* Get isrow_d */ 32079566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3208feb78a15SHong Zhang rstart = mat->rmap->rstart; 32099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32119c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32129566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3213feb78a15SHong Zhang 32149566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32159566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32169566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3217feb78a15SHong Zhang 32189c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32199566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32209566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3221ddfdf956SHong Zhang 32229566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 322307250d77SHong Zhang 32249566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32259566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 322664efcef9SHong Zhang 32279c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3228ddfdf956SHong Zhang /* off-process column indices */ 32299c988bcaSHong Zhang count = 0; 32309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3232feb78a15SHong Zhang 32339566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32349566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32358b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3236f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32379c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32381c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32391c645242SHong Zhang count++; 32408b3fa1f7SHong Zhang } 32418b3fa1f7SHong Zhang } 32429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32439566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 324407250d77SHong Zhang 32459566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3246b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3247b6d9b4e0SHong Zhang 32489566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32499c988bcaSHong Zhang *garray = cmap1; 32509c988bcaSHong Zhang 32519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32529566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3255040216a4SHong Zhang } 3256040216a4SHong Zhang 3257b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3258d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3259d71ae5a4SJacob Faibussowitsch { 3260b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32611fd43edeSHong Zhang Mat M = NULL; 32623b00a383SHong Zhang MPI_Comm comm; 3263b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32643b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3265c0c276a7Ssdargavi PetscInt n, count, M_size, N_size; 32663b00a383SHong Zhang 32673b00a383SHong Zhang PetscFunctionBegin; 32689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32693b00a383SHong Zhang 32703b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3271b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32729566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 327328b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32743b00a383SHong Zhang 32759566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 327628b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32773b00a383SHong Zhang 32789566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 327928b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32803b00a383SHong Zhang 3281b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3282b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32839566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32849566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 328548a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32869566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32879566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32883b00a383SHong Zhang 32893b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 3290c0c276a7Ssdargavi PetscInt *garray, *garray_compact; 3291b20e2604SHong Zhang PetscInt BsubN; 32923b00a383SHong Zhang 3293b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32949566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32953b00a383SHong Zhang 3296b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 32979566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 32989566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 32993b00a383SHong Zhang 3300c0c276a7Ssdargavi // Compact garray so its not of size Bn 3301c0c276a7Ssdargavi PetscCall(ISGetSize(iscol_o, &count)); 3302c0c276a7Ssdargavi PetscCall(PetscMalloc1(count, &garray_compact)); 3303c0c276a7Ssdargavi PetscCall(PetscArraycpy(garray_compact, garray, count)); 3304c0c276a7Ssdargavi 33059c988bcaSHong Zhang /* Create submatrix M */ 3306c0c276a7Ssdargavi PetscCall(ISGetSize(isrow, &M_size)); 3307c0c276a7Ssdargavi PetscCall(ISGetSize(iscol, &N_size)); 3308c0c276a7Ssdargavi PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M)); 33093b00a383SHong Zhang 3310b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3311b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33127cfce09cSHong Zhang 33139566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3314b20e2604SHong Zhang n = asub->B->cmap->N; 3315b20e2604SHong Zhang if (BsubN > n) { 3316c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33177cfce09cSHong Zhang const PetscInt *idx; 33189c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33199566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33207cfce09cSHong Zhang 33219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33227cfce09cSHong Zhang j = 0; 33239566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3324b20e2604SHong Zhang for (i = 0; i < n; i++) { 33257cfce09cSHong Zhang if (j >= BsubN) break; 33269c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33277cfce09cSHong Zhang 3328966bd95aSPierre Jolivet PetscCheck(subgarray[i] == garray[j], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33297cfce09cSHong Zhang idx_new[i] = idx[j++]; 33307cfce09cSHong Zhang } 33319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33327cfce09cSHong Zhang 33339566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33349566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33357cfce09cSHong Zhang 3336966bd95aSPierre Jolivet } else PetscCheck(BsubN >= n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 33377cfce09cSHong Zhang 33389566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3339b20e2604SHong Zhang *submat = M; 33403b00a383SHong Zhang 3341e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33429566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33443b00a383SHong Zhang 33459566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33473b00a383SHong Zhang 33489566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33499566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33503b00a383SHong Zhang } 33513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33523b00a383SHong Zhang } 33533b00a383SHong Zhang 3354d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3355d71ae5a4SJacob Faibussowitsch { 33561358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33573782ecc7SHong Zhang PetscInt csize; 335818e627e3SHong Zhang PetscInt n, i, j, start, end; 33594a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33603782ecc7SHong Zhang MPI_Comm comm; 33613782ecc7SHong Zhang 33623782ecc7SHong Zhang PetscFunctionBegin; 3363bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3364a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33658f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33669566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3367d5761cdaSHong Zhang if (isrow_d) { 3368d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3369d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3370d5761cdaSHong Zhang } else { 33719566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3372d5761cdaSHong Zhang if (iscol_local) { 3373d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3374d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3375d5761cdaSHong Zhang } 3376d5761cdaSHong Zhang } 33778f69fa7bSHong Zhang } else { 3378e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 337918e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33809566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33813782ecc7SHong Zhang if (!n) { 338218e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33833782ecc7SHong Zhang } else { 33849566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33859566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3386ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33878f69fa7bSHong Zhang } 33883782ecc7SHong Zhang 3389e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 339018e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 339218e627e3SHong Zhang if (!n) { 339318e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 339418e627e3SHong Zhang } else { 33959566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33969566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 339718e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 339818e627e3SHong Zhang } 339918e627e3SHong Zhang 34009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3401*5440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPI_C_BOOL, MPI_LAND, comm)); 340218e627e3SHong Zhang sameRowDist = tsameDist[0]; 340318e627e3SHong Zhang } 340418e627e3SHong Zhang 340518e627e3SHong Zhang if (sameRowDist) { 3406b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34073b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34089566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3410b20e2604SHong Zhang } else { /* sameRowDist */ 34113b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34121358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34131358a193SHong Zhang PetscBool sorted; 34149566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34159566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34169566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 341708401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34181358a193SHong Zhang 34199566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34201358a193SHong Zhang if (sorted) { 34211358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34229566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34243782ecc7SHong Zhang } 34251358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 342648c0d076SHong Zhang IS iscol_sub; 34279566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 342848c0d076SHong Zhang if (iscol_sub) { 34299566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 343148c0d076SHong Zhang } 34321358a193SHong Zhang } 34331358a193SHong Zhang } 34341358a193SHong Zhang } 34353782ecc7SHong Zhang 3436bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34373782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34389566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 343928b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34403782ecc7SHong Zhang } else { 344148a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34421358a193SHong Zhang } 34433782ecc7SHong Zhang 34449566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34459566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34468f69fa7bSHong Zhang 3447b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34489566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34499566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3450b79d0421SJed Brown } 34513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34524aa3045dSJed Brown } 34534aa3045dSJed Brown 3454feb78a15SHong Zhang /*@C 345511a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3456feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3457feb78a15SHong Zhang 3458d083f849SBarry Smith Collective 3459feb78a15SHong Zhang 3460feb78a15SHong Zhang Input Parameters: 3461feb78a15SHong Zhang + comm - MPI communicator 3462c0c276a7Ssdargavi . M - the global row size 3463c0c276a7Ssdargavi . N - the global column size 3464feb78a15SHong Zhang . A - "diagonal" portion of matrix 3465c0c276a7Ssdargavi . B - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray 3466a3156c1cSJunchao Zhang - garray - either `NULL` or the global index of `B` columns. If not `NULL`, it should be allocated by `PetscMalloc1()` and will be owned by `mat` thereafter. 3467feb78a15SHong Zhang 3468feb78a15SHong Zhang Output Parameter: 34692ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 347027430b45SBarry Smith 3471feb78a15SHong Zhang Level: advanced 3472feb78a15SHong Zhang 3473feb78a15SHong Zhang Notes: 347411a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 347511a5261eSBarry Smith 3476c0c276a7Ssdargavi `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore. 3477feb78a15SHong Zhang 3478a3156c1cSJunchao Zhang If `garray` is `NULL`, `B` will be compacted to use local indices. In this sense, `B`'s sparsity pattern (nonzerostate) will be changed. If `B` is a device matrix, we need to somehow also update 3479a3156c1cSJunchao Zhang `B`'s copy on device. We do so by increasing `B`'s nonzerostate. In use of `B` on device, device matrix types should detect this change (ref. internal routines `MatSeqAIJCUSPARSECopyToGPU()` or 3480a3156c1cSJunchao Zhang `MatAssemblyEnd_SeqAIJKokkos()`) and will just destroy and then recreate the device copy of `B`. It is not optimal, but is easy to implement and less hacky. To avoid this overhead, try to compute `garray` 3481a3156c1cSJunchao Zhang yourself, see algorithms in the private function `MatSetUpMultiply_MPIAIJ()`. 3482a3156c1cSJunchao Zhang 3483b1dff882SJunchao Zhang The `NULL`-ness of `garray` doesn't need to be collective, in other words, `garray` can be `NULL` on some processes while not on others. 3484b1dff882SJunchao Zhang 34851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3486feb78a15SHong Zhang @*/ 3487c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat) 3488d71ae5a4SJacob Faibussowitsch { 3489c0c276a7Ssdargavi PetscInt m, n; 34904ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3491f18d1d10SJunchao Zhang Mat_MPIAIJ *mpiaij; 3492f18d1d10SJunchao Zhang Mat C; 3493feb78a15SHong Zhang 3494feb78a15SHong Zhang PetscFunctionBegin; 3495f18d1d10SJunchao Zhang PetscCall(MatCreate(comm, &C)); 34969566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 349708401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 349858b7e2c1SStefano Zampini PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3499feb78a15SHong Zhang 3500f18d1d10SJunchao Zhang PetscCall(MatSetSizes(C, m, n, M, N)); 35014ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 35024ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 3503f18d1d10SJunchao Zhang PetscCall(MatSetType(C, mpi_mat_type)); 3504a3156c1cSJunchao Zhang if (!garray) { 3505a3156c1cSJunchao Zhang const PetscScalar *ba; 3506a3156c1cSJunchao Zhang 3507a3156c1cSJunchao Zhang B->nonzerostate++; 3508a3156c1cSJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(B, &ba)); /* Since we will destroy B's device copy, we need to make sure the host copy is up to date */ 3509a3156c1cSJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(B, &ba)); 3510a3156c1cSJunchao Zhang } 35114ab4d6f4SRichard Tran Mills 3512f18d1d10SJunchao Zhang PetscCall(MatSetBlockSizes(C, A->rmap->bs, A->cmap->bs)); 3513f18d1d10SJunchao Zhang PetscCall(PetscLayoutSetUp(C->rmap)); 3514f18d1d10SJunchao Zhang PetscCall(PetscLayoutSetUp(C->cmap)); 3515feb78a15SHong Zhang 3516f18d1d10SJunchao Zhang mpiaij = (Mat_MPIAIJ *)C->data; 3517c0c276a7Ssdargavi mpiaij->A = A; 3518c0c276a7Ssdargavi mpiaij->B = B; 3519c0c276a7Ssdargavi mpiaij->garray = garray; 3520f18d1d10SJunchao Zhang C->preallocated = PETSC_TRUE; 3521f18d1d10SJunchao Zhang C->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 3522c0c276a7Ssdargavi 3523f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3524f18d1d10SJunchao Zhang PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3525c0c276a7Ssdargavi /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 3526c0c276a7Ssdargavi also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced 3527c0c276a7Ssdargavi */ 3528f18d1d10SJunchao Zhang PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3529f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 3530f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 3531f18d1d10SJunchao Zhang *mat = C; 35323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3533feb78a15SHong Zhang } 3534feb78a15SHong Zhang 3535ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35364aa3045dSJed Brown 3537d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3538d71ae5a4SJacob Faibussowitsch { 353998b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 354085f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 354198b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35421fd43edeSHong Zhang Mat M, Msub, B = a->B; 354398b658c4SHong Zhang MatScalar *aa; 354400e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3545a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 354698b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 354798b658c4SHong Zhang IS iscol_sub, iscmap; 354898b658c4SHong Zhang const PetscInt *is_idx, *cmap; 354918e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3550a31a438cSHong Zhang MPI_Comm comm; 35517e2c5f70SBarry Smith 3552a0ff6018SBarry Smith PetscFunctionBegin; 35539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3554d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35559566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 355628b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35579566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3558d5761cdaSHong Zhang 35599566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 356028b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3561d5761cdaSHong Zhang 35629566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 356328b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3564d5761cdaSHong Zhang 35659566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3566d5761cdaSHong Zhang 3567d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35683b00a383SHong Zhang PetscBool flg; 35693b00a383SHong Zhang 35709566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35719566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3572bcae8d28SHong Zhang 35733b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3574366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35759566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3576366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3577*5440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3578366a327dSHong Zhang if (allcolumns) { 3579366a327dSHong Zhang iscol_sub = iscol_local; 35809566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35819566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3582366a327dSHong Zhang 35833b00a383SHong Zhang } else { 35841358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3585244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 35898d2139bdSHong Zhang count = 0; 3590a31a438cSHong Zhang k = 0; 3591a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3592a31a438cSHong Zhang j = is_idx[i]; 3593a31a438cSHong Zhang if (j >= cstart && j < cend) { 3594a31a438cSHong Zhang /* diagonal part of mat */ 35958d2139bdSHong Zhang idx[count] = j; 3596366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 35974a3daf6eSHong Zhang } else if (Bn) { 3598a31a438cSHong Zhang /* off-diagonal part of mat */ 3599a31a438cSHong Zhang if (j == garray[k]) { 36008d2139bdSHong Zhang idx[count] = j; 3601a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3602a31a438cSHong Zhang } else if (j > garray[k]) { 3603a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3604a31a438cSHong Zhang if (j == garray[k]) { 3605a31a438cSHong Zhang idx[count] = j; 3606a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36078d2139bdSHong Zhang } 36088d2139bdSHong Zhang } 36098d2139bdSHong Zhang } 36108d2139bdSHong Zhang } 36119566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36128d2139bdSHong Zhang 36139566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36149566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36159566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3616b6d9b4e0SHong Zhang 36179566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3618a31a438cSHong Zhang } 36198b3fa1f7SHong Zhang 36203b00a383SHong Zhang /* (3) Create sequential Msub */ 36219566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3622d5761cdaSHong Zhang } 36238d2139bdSHong Zhang 36249566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 362557508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Msub->data; 362698b658c4SHong Zhang ii = aij->i; 36279566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3628a0ff6018SBarry Smith 3629a0ff6018SBarry Smith /* 3630a0ff6018SBarry Smith m - number of local rows 3631a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3632a0ff6018SBarry Smith rstart - first row in new global matrix generated 3633a0ff6018SBarry Smith */ 36349566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 363598b658c4SHong Zhang 36363b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36373b00a383SHong Zhang /* (4) Create parallel newmat */ 363898b658c4SHong Zhang PetscMPIInt rank, size; 3639bcae8d28SHong Zhang PetscInt csize; 364098b658c4SHong Zhang 36419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 364300e6dbe6SBarry Smith 3644a0ff6018SBarry Smith /* 364500e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 364600e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3647a0ff6018SBarry Smith */ 364800e6dbe6SBarry Smith 364900e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36509566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36516a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36529566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3653a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3654e2c4fddaSBarry Smith nlocal = m; 36556a6a5d1dSBarry Smith } else { 3656a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3657ab50ec6bSBarry Smith } 3658ab50ec6bSBarry Smith } else { 36596a6a5d1dSBarry Smith nlocal = csize; 36606a6a5d1dSBarry Smith } 36619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 366200e6dbe6SBarry Smith rstart = rend - nlocal; 3663aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 366400e6dbe6SBarry Smith 366500e6dbe6SBarry Smith /* next, compute all the lengths */ 366698b658c4SHong Zhang jj = aij->j; 36679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 366800e6dbe6SBarry Smith olens = dlens + m; 366900e6dbe6SBarry Smith for (i = 0; i < m; i++) { 367000e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 367100e6dbe6SBarry Smith olen = 0; 367200e6dbe6SBarry Smith dlen = 0; 367300e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 367415b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 367500e6dbe6SBarry Smith else dlen++; 367600e6dbe6SBarry Smith jj++; 367700e6dbe6SBarry Smith } 367800e6dbe6SBarry Smith olens[i] = olen; 367900e6dbe6SBarry Smith dlens[i] = dlen; 368000e6dbe6SBarry Smith } 3681b6d9b4e0SHong Zhang 36829566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36839566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 368498b658c4SHong Zhang 36859566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36869566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36879566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36889566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 36899566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 36909566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3691d5761cdaSHong Zhang 3692d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3693a0ff6018SBarry Smith M = *newmat; 36949566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 369508401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 36969566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3697c48de900SBarry Smith /* 3698c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3699c48de900SBarry Smith rather than the slower MatSetValues(). 3700c48de900SBarry Smith */ 3701c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3702c48de900SBarry Smith M->assembled = PETSC_FALSE; 3703a0ff6018SBarry Smith } 3704548ecf4dSHong Zhang 37053b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37079566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 370898b658c4SHong Zhang 370998b658c4SHong Zhang jj = aij->j; 37109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3711a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3712a0ff6018SBarry Smith row = rstart + i; 371300e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 371415b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37159566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37169371c9d4SSatish Balay jj += nz; 37179371c9d4SSatish Balay aa += nz; 3718a0ff6018SBarry Smith } 37199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37209566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3721a0ff6018SBarry Smith 37229566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37239566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3724fee21e36SBarry Smith 37259566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 372698b658c4SHong Zhang 372798b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3728fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37293b00a383SHong Zhang *newmat = M; 3730f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37319566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 373298b658c4SHong Zhang 3733f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 373598b658c4SHong Zhang 3736f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37379566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3738bcae8d28SHong Zhang 3739bcae8d28SHong Zhang if (iscol_local) { 3740f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3742bcae8d28SHong Zhang } 374398b658c4SHong Zhang } 37443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3745a0ff6018SBarry Smith } 3746273d9f13SBarry Smith 3747df40acb1SHong Zhang /* 3748df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3749df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3750df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3751df40acb1SHong Zhang 375211a5261eSBarry Smith This requires a sequential iscol with all indices. 3753df40acb1SHong Zhang */ 3754d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3755d71ae5a4SJacob Faibussowitsch { 3756df40acb1SHong Zhang PetscMPIInt rank, size; 3757df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3758df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3759df40acb1SHong Zhang Mat M, Mreuse; 376098b658c4SHong Zhang MatScalar *aa, *vwork; 3761df40acb1SHong Zhang MPI_Comm comm; 3762df40acb1SHong Zhang Mat_SeqAIJ *aij; 37630b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3764df40acb1SHong Zhang 3765df40acb1SHong Zhang PetscFunctionBegin; 37669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3769df40acb1SHong Zhang 37700b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37719566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37729566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37730b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3774*5440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37750b27a90eSHong Zhang 3776df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37779566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 377828b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37799566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3780df40acb1SHong Zhang } else { 37819566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3782df40acb1SHong Zhang } 3783df40acb1SHong Zhang 3784df40acb1SHong Zhang /* 3785df40acb1SHong Zhang m - number of local rows 3786df40acb1SHong Zhang n - number of columns (same on all processors) 3787df40acb1SHong Zhang rstart - first row in new global matrix generated 3788df40acb1SHong Zhang */ 37899566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 37909566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3791df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 379257508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3793df40acb1SHong Zhang ii = aij->i; 3794df40acb1SHong Zhang jj = aij->j; 3795df40acb1SHong Zhang 3796df40acb1SHong Zhang /* 3797df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3798df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3799df40acb1SHong Zhang */ 3800df40acb1SHong Zhang 3801df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3802df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38039566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3804df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3805df40acb1SHong Zhang nlocal = m; 3806df40acb1SHong Zhang } else { 3807df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3808df40acb1SHong Zhang } 3809df40acb1SHong Zhang } else { 3810df40acb1SHong Zhang nlocal = csize; 3811df40acb1SHong Zhang } 38129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3813df40acb1SHong Zhang rstart = rend - nlocal; 3814aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3815df40acb1SHong Zhang 3816df40acb1SHong Zhang /* next, compute all the lengths */ 38179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3818df40acb1SHong Zhang olens = dlens + m; 3819df40acb1SHong Zhang for (i = 0; i < m; i++) { 3820df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3821df40acb1SHong Zhang olen = 0; 3822df40acb1SHong Zhang dlen = 0; 3823df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3824df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3825df40acb1SHong Zhang else dlen++; 3826df40acb1SHong Zhang jj++; 3827df40acb1SHong Zhang } 3828df40acb1SHong Zhang olens[i] = olen; 3829df40acb1SHong Zhang dlens[i] = dlen; 3830df40acb1SHong Zhang } 38319566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38329566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38349566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38359566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38369566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3837df40acb1SHong Zhang } else { 3838df40acb1SHong Zhang PetscInt ml, nl; 3839df40acb1SHong Zhang 3840df40acb1SHong Zhang M = *newmat; 38419566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 384208401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38439566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3844df40acb1SHong Zhang /* 3845df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3846df40acb1SHong Zhang rather than the slower MatSetValues(). 3847df40acb1SHong Zhang */ 3848df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3849df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3850df40acb1SHong Zhang } 38519566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 385257508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3853df40acb1SHong Zhang ii = aij->i; 3854df40acb1SHong Zhang jj = aij->j; 38552e5835c6SStefano Zampini 38562e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3858df40acb1SHong Zhang for (i = 0; i < m; i++) { 3859df40acb1SHong Zhang row = rstart + i; 3860df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38619371c9d4SSatish Balay cwork = jj; 38628e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38639371c9d4SSatish Balay vwork = aa; 38648e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38659566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3866df40acb1SHong Zhang } 38679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3868df40acb1SHong Zhang 38699566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38709566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3871df40acb1SHong Zhang *newmat = M; 3872df40acb1SHong Zhang 3873df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3874df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38759566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38769566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3877df40acb1SHong Zhang } 38783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3879df40acb1SHong Zhang } 3880df40acb1SHong Zhang 3881ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3882d71ae5a4SJacob Faibussowitsch { 38836a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 38849f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3885ccd8e176SBarry Smith const PetscInt *JJ; 3886eeb24464SBarry Smith PetscBool nooffprocentries; 38876a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3888ccd8e176SBarry Smith 3889ccd8e176SBarry Smith PetscFunctionBegin; 38909566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 38919566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3892d0f46423SBarry Smith m = B->rmap->n; 3893d0f46423SBarry Smith cstart = B->cmap->rstart; 3894d0f46423SBarry Smith cend = B->cmap->rend; 3895d0f46423SBarry Smith rstart = B->rmap->rstart; 38969f0612e4SBarry Smith irstart = Ii[0]; 3897899cda47SBarry Smith 38989566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3899ccd8e176SBarry Smith 390076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39018f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3902ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39039f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 390408401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 390508401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 390608401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3907ecc77c7aSBarry Smith } 390876bd3646SJed Brown } 3909ecc77c7aSBarry Smith 39108f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3911b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39129f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3913ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3914ccd8e176SBarry Smith d = 0; 39150daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39160daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3917ccd8e176SBarry Smith } 3918ccd8e176SBarry Smith d_nnz[i] = d; 3919ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3920ccd8e176SBarry Smith } 39219566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39229566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3923ccd8e176SBarry Smith 39248f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3925ccd8e176SBarry Smith ii = i + rstart; 39269f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3927ccd8e176SBarry Smith } 3928eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3929eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39309566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39319566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3932eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3933ccd8e176SBarry Smith 39346a3d2595SBarry Smith /* count number of entries below block diagonal */ 39356a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39366a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39376a3d2595SBarry Smith Aij->ld = ld; 39386a3d2595SBarry Smith for (i = 0; i < m; i++) { 39396a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39406a3d2595SBarry Smith j = 0; 3941ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39426a3d2595SBarry Smith ld[i] = j; 3943720a2405SPierre Jolivet if (J) J += nnz; 39446a3d2595SBarry Smith } 39456a3d2595SBarry Smith 39469566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3948ccd8e176SBarry Smith } 3949ccd8e176SBarry Smith 39501eea217eSSatish Balay /*@ 395111a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3952ccd8e176SBarry Smith (the default parallel PETSc format). 3953ccd8e176SBarry Smith 3954d083f849SBarry Smith Collective 3955ccd8e176SBarry Smith 3956ccd8e176SBarry Smith Input Parameters: 3957a1661176SMatthew Knepley + B - the matrix 3958d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3959d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3960ccd8e176SBarry Smith - v - optional values in the matrix 3961ccd8e176SBarry Smith 3962ccd8e176SBarry Smith Level: developer 3963ccd8e176SBarry Smith 396412251496SSatish Balay Notes: 39652ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39662ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 396711a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 396812251496SSatish Balay 39692ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 397012251496SSatish Balay 3971a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3972a4bd8bc0SBarry Smith 3973a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3974a4bd8bc0SBarry Smith 3975a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3976a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3977a4bd8bc0SBarry Smith 397812251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 397912251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3980c5e4d11fSDmitry Karpeev as shown 398127430b45SBarry Smith .vb 398227430b45SBarry Smith 1 0 0 398327430b45SBarry Smith 2 0 3 P0 398427430b45SBarry Smith ------- 398527430b45SBarry Smith 4 5 6 P1 398627430b45SBarry Smith 398727430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 398827430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 398927430b45SBarry Smith j = {0,0,2} [size = 3] 399027430b45SBarry Smith v = {1,2,3} [size = 3] 399127430b45SBarry Smith 399227430b45SBarry Smith Process1 [P1] rows_owned=[2] 399327430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 399427430b45SBarry Smith j = {0,1,2} [size = 3] 399527430b45SBarry Smith v = {4,5,6} [size = 3] 399627430b45SBarry Smith .ve 399712251496SSatish Balay 3998fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 3999a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4000ccd8e176SBarry Smith @*/ 4001d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4002d71ae5a4SJacob Faibussowitsch { 4003ccd8e176SBarry Smith PetscFunctionBegin; 4004cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4006ccd8e176SBarry Smith } 4007ccd8e176SBarry Smith 40085d83a8b1SBarry Smith /*@ 400911a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4010273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4011273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 401220f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4013273d9f13SBarry Smith 4014d083f849SBarry Smith Collective 4015273d9f13SBarry Smith 4016273d9f13SBarry Smith Input Parameters: 40171c4f3114SJed Brown + B - the matrix 4018273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4019273d9f13SBarry Smith (same value is used for all local rows) 4020273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4021273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40222ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4023273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40243287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40253287b5eaSJed Brown the diagonal entry even if it is zero. 4026273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4027273d9f13SBarry Smith submatrix (same value is used for all local rows). 4028273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4029273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40302ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4031273d9f13SBarry Smith structure. The size of this array is equal to the number 4032273d9f13SBarry Smith of local rows, i.e 'm'. 4033273d9f13SBarry Smith 40342920cce0SJacob Faibussowitsch Example Usage: 403527430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 403627430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 403727430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 403827430b45SBarry Smith as follows 403927430b45SBarry Smith 404027430b45SBarry Smith .vb 404127430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 404227430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 404327430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 404427430b45SBarry Smith ------------------------------------- 404527430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 404627430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 404727430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 404827430b45SBarry Smith ------------------------------------- 404927430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 405027430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 405127430b45SBarry Smith .ve 405227430b45SBarry Smith 405327430b45SBarry Smith This can be represented as a collection of submatrices as 405427430b45SBarry Smith .vb 405527430b45SBarry Smith A B C 405627430b45SBarry Smith D E F 405727430b45SBarry Smith G H I 405827430b45SBarry Smith .ve 405927430b45SBarry Smith 406027430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 406127430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 406227430b45SBarry Smith 406327430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 406427430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 406527430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 406627430b45SBarry Smith 406727430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 406827430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 406927430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 407027430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 407127430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 40725163b989SNuno Nobre matrix, and [DF] as another `MATSEQAIJ` matrix. 407327430b45SBarry Smith 407420f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 40755163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 40765163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 40775163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 40785163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 407920f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 408027430b45SBarry Smith .vb 408127430b45SBarry Smith proc0 dnz = 2, o_nz = 2 408227430b45SBarry Smith proc1 dnz = 3, o_nz = 2 408327430b45SBarry Smith proc2 dnz = 1, o_nz = 4 408427430b45SBarry Smith .ve 408520f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 408627430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 408727430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 408827430b45SBarry Smith 34 values. 408927430b45SBarry Smith 409020f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 409127430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 409220f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 409327430b45SBarry Smith .vb 409427430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 409527430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 409627430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 409727430b45SBarry Smith .ve 409827430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 409927430b45SBarry Smith hence pre-allocation is perfect. 410027430b45SBarry Smith 410127430b45SBarry Smith Level: intermediate 410227430b45SBarry Smith 410327430b45SBarry Smith Notes: 410449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 410549a6f317SBarry Smith 410627430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41070598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4108651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4109273d9f13SBarry Smith 4110273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4111273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4112273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4113273d9f13SBarry Smith 4114273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4115a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4116a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4117a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4118a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4119a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4120a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4121a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4122a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4123273d9f13SBarry Smith 41242ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4125273d9f13SBarry Smith 412627430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4127aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 412827430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4129aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4130aa95bbe8SBarry Smith 41311cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4132a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4133273d9f13SBarry Smith @*/ 4134d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4135d71ae5a4SJacob Faibussowitsch { 4136273d9f13SBarry Smith PetscFunctionBegin; 41376ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41386ba663aaSJed Brown PetscValidType(B, 1); 4139cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4141273d9f13SBarry Smith } 4142273d9f13SBarry Smith 414358d36128SBarry Smith /*@ 414411a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41458f8f2f0dSBarry Smith CSR format for the local rows. 41462fb0ec9aSBarry Smith 4147d083f849SBarry Smith Collective 41482fb0ec9aSBarry Smith 41492fb0ec9aSBarry Smith Input Parameters: 41502fb0ec9aSBarry Smith + comm - MPI communicator 415111a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41522fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4153d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4154d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4155d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4156d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41575693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41585693b835SJunchao Zhang . j - global column indices 4159f1f2ae84SBarry Smith - a - optional matrix values 41602fb0ec9aSBarry Smith 41612fb0ec9aSBarry Smith Output Parameter: 41622fb0ec9aSBarry Smith . mat - the matrix 416303bfb495SBarry Smith 41642fb0ec9aSBarry Smith Level: intermediate 41652fb0ec9aSBarry Smith 41662fb0ec9aSBarry Smith Notes: 41672ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4168d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4169d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41702fb0ec9aSBarry Smith 41712ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 417212251496SSatish Balay 41735693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4174a4bd8bc0SBarry Smith 41755693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4176a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4177a4bd8bc0SBarry Smith 417812251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4179d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4180c5e4d11fSDmitry Karpeev as shown 41812ef1f0ffSBarry Smith .vb 41822ef1f0ffSBarry Smith 1 0 0 41832ef1f0ffSBarry Smith 2 0 3 P0 41842ef1f0ffSBarry Smith ------- 41852ef1f0ffSBarry Smith 4 5 6 P1 41868f8f2f0dSBarry Smith 41872ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 41882ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 41892ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 41902ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 41912fb0ec9aSBarry Smith 41922ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 41932ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 41942ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 41952ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 41962ef1f0ffSBarry Smith .ve 41972ef1f0ffSBarry Smith 4198d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 41995693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42002fb0ec9aSBarry Smith @*/ 4201d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4202d71ae5a4SJacob Faibussowitsch { 42032fb0ec9aSBarry Smith PetscFunctionBegin; 420408401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 420508401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42069566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42079566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42089566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42099566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42109566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42122fb0ec9aSBarry Smith } 42132fb0ec9aSBarry Smith 42148f8f2f0dSBarry Smith /*@ 421511a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42162ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42172ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42186a3d2595SBarry Smith 42196a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42208f8f2f0dSBarry Smith 42218f8f2f0dSBarry Smith Collective 42228f8f2f0dSBarry Smith 42238f8f2f0dSBarry Smith Input Parameters: 42248f8f2f0dSBarry Smith + mat - the matrix 422511a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42268f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 422711a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42288f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 422911a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 423011a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42318f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42328f8f2f0dSBarry Smith . J - column indices 42338f8f2f0dSBarry Smith - v - matrix values 42348f8f2f0dSBarry Smith 42352ef1f0ffSBarry Smith Level: deprecated 42368f8f2f0dSBarry Smith 42371cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4238a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42398f8f2f0dSBarry Smith @*/ 4240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4241d71ae5a4SJacob Faibussowitsch { 42426a3d2595SBarry Smith PetscInt nnz, i; 42438f8f2f0dSBarry Smith PetscBool nooffprocentries; 42448f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4245fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4246fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42478f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42486a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42496a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42508f8f2f0dSBarry Smith 42518f8f2f0dSBarry Smith PetscFunctionBegin; 4252aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 425308401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 425408401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 425508401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42568f8f2f0dSBarry Smith 42579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42598f8f2f0dSBarry Smith 42608f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42614c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42624c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42634c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42644c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42654c17f1ccSBarry Smith } 42664c17f1ccSBarry Smith } 42678f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42688f8f2f0dSBarry Smith Iii = Ii[i]; 42698f8f2f0dSBarry Smith ldi = ld[i]; 42708f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42719566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42729566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42739566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42748f8f2f0dSBarry Smith ad += md; 42758f8f2f0dSBarry Smith ao += nnz - md; 42768f8f2f0dSBarry Smith } 42778f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42788f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42819566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42829566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42839566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42849566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42859566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42868f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42888f8f2f0dSBarry Smith } 42898f8f2f0dSBarry Smith 42906a3d2595SBarry Smith /*@ 429111a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 42926a3d2595SBarry Smith 42936a3d2595SBarry Smith Collective 42946a3d2595SBarry Smith 42956a3d2595SBarry Smith Input Parameters: 42966a3d2595SBarry Smith + mat - the matrix 42976a3d2595SBarry Smith - v - matrix values, stored by row 42986a3d2595SBarry Smith 42996a3d2595SBarry Smith Level: intermediate 43006a3d2595SBarry Smith 4301a4bd8bc0SBarry Smith Notes: 43026a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43036a3d2595SBarry Smith 4304a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4305a4bd8bc0SBarry Smith 43061cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4307a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43086a3d2595SBarry Smith @*/ 4309d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4310d71ae5a4SJacob Faibussowitsch { 43116a3d2595SBarry Smith PetscInt nnz, i, m; 43126a3d2595SBarry Smith PetscBool nooffprocentries; 43136a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43146a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43156a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43166a3d2595SBarry Smith PetscScalar *ad, *ao; 43176a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43186a3d2595SBarry Smith PetscInt ldi, Iii, md; 43196a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43206a3d2595SBarry Smith 43216a3d2595SBarry Smith PetscFunctionBegin; 43226a3d2595SBarry Smith m = mat->rmap->n; 43236a3d2595SBarry Smith 43246a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43256a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43266a3d2595SBarry Smith Iii = 0; 43276a3d2595SBarry Smith for (i = 0; i < m; i++) { 43286a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43296a3d2595SBarry Smith ldi = ld[i]; 43306a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43316a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43326a3d2595SBarry Smith ad += md; 4333810441c8SPierre Jolivet if (ao) { 4334810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4335810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43366a3d2595SBarry Smith ao += nnz - md; 4337810441c8SPierre Jolivet } 43386a3d2595SBarry Smith Iii += nnz; 43396a3d2595SBarry Smith } 43406a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43416a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43426a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43436a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43446a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43456a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43466a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43476a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43486a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43496a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43516a3d2595SBarry Smith } 43526a3d2595SBarry Smith 43535d83a8b1SBarry Smith /*@ 435411a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4355273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4356273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43572ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4358273d9f13SBarry Smith 4359d083f849SBarry Smith Collective 4360273d9f13SBarry Smith 4361273d9f13SBarry Smith Input Parameters: 4362273d9f13SBarry Smith + comm - MPI communicator 436311a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4364273d9f13SBarry Smith This value should be the same as the local size used in creating the 4365273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4366273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 436745f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4368273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 436911a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 437011a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4371273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4372273d9f13SBarry Smith (same value is used for all local rows) 4373273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4374273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43752ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4376273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4377273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4378273d9f13SBarry Smith submatrix (same value is used for all local rows). 4379273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4380273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43812ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4382273d9f13SBarry Smith structure. The size of this array is equal to the number 4383273d9f13SBarry Smith of local rows, i.e 'm'. 4384273d9f13SBarry Smith 4385273d9f13SBarry Smith Output Parameter: 4386273d9f13SBarry Smith . A - the matrix 4387273d9f13SBarry Smith 438827430b45SBarry Smith Options Database Keys: 438927430b45SBarry Smith + -mat_no_inode - Do not use inodes 439027430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 439127430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4392727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4393727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 439427430b45SBarry Smith 43952ef1f0ffSBarry Smith Level: intermediate 43962ef1f0ffSBarry Smith 439727430b45SBarry Smith Notes: 439877433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4399f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 440011a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4401175b88e8SBarry Smith 440249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 440349a6f317SBarry Smith 44042ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44052ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4406273d9f13SBarry Smith storage requirements for this matrix. 4407273d9f13SBarry Smith 440811a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4409273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4410273d9f13SBarry Smith that argument. 4411273d9f13SBarry Smith 4412727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4413727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4414727bdf9bSBarry Smith 4415273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4416273d9f13SBarry Smith (possibly both). 4417273d9f13SBarry Smith 441833a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4419727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4420727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4421727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 442233a7c187SSatish Balay values corresponding to [m x N] submatrix. 4423273d9f13SBarry Smith 442433a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 442533a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4426df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 442733a7c187SSatish Balay 442833a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 442933a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 443033a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 443133a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 443233a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 443333a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 44340b4b7b1cSBarry Smith illustrates this concept. The two matrices, the DIAGONAL portion and 44350b4b7b1cSBarry Smith the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices. 443633a7c187SSatish Balay 443733a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 443833a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 443933a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 444033a7c187SSatish Balay local matrix (a rectangular submatrix). 4441273d9f13SBarry Smith 44422ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4443273d9f13SBarry Smith 444497d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44452ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4446da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4447da57b5cdSKarl Rupp .vb 44482ef1f0ffSBarry Smith MatCreate(..., &A); 44492ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44502ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44512ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4452da57b5cdSKarl Rupp .ve 445397d05335SKris Buschelman 4454273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4455273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4456273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4457273d9f13SBarry Smith 44582920cce0SJacob Faibussowitsch Example Usage: 4459273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4460273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4461273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4462efc377ccSKarl Rupp as follows 4463273d9f13SBarry Smith 4464273d9f13SBarry Smith .vb 4465273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4466273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4467273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4468273d9f13SBarry Smith ------------------------------------- 4469273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4470273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4471273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4472273d9f13SBarry Smith ------------------------------------- 4473273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4474273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4475273d9f13SBarry Smith .ve 4476273d9f13SBarry Smith 4477da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4478273d9f13SBarry Smith 4479273d9f13SBarry Smith .vb 4480273d9f13SBarry Smith A B C 4481273d9f13SBarry Smith D E F 4482273d9f13SBarry Smith G H I 4483273d9f13SBarry Smith .ve 4484273d9f13SBarry Smith 4485273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4486273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4487273d9f13SBarry Smith 4488273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4489273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4490273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4491273d9f13SBarry Smith 4492273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4493273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4494273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4495273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 449627430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 44975163b989SNuno Nobre matrix, and [DF] as another SeqAIJ matrix. 4498273d9f13SBarry Smith 44992ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45005163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 45015163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 45025163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 45035163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45042ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4505273d9f13SBarry Smith .vb 450627430b45SBarry Smith proc0 dnz = 2, o_nz = 2 450727430b45SBarry Smith proc1 dnz = 3, o_nz = 2 450827430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4509273d9f13SBarry Smith .ve 45102ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4511273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4512273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4513273d9f13SBarry Smith 34 values. 4514273d9f13SBarry Smith 45152ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4516a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4517da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4518273d9f13SBarry Smith .vb 451927430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 452027430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 452127430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4522273d9f13SBarry Smith .ve 4523273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4524273d9f13SBarry Smith hence pre-allocation is perfect. 4525273d9f13SBarry Smith 45261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4527727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4528727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4529273d9f13SBarry Smith @*/ 4530d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4531d71ae5a4SJacob Faibussowitsch { 4532b1d57f15SBarry Smith PetscMPIInt size; 4533273d9f13SBarry Smith 4534273d9f13SBarry Smith PetscFunctionBegin; 45359566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45369566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4538273d9f13SBarry Smith if (size > 1) { 45399566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45409566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4541273d9f13SBarry Smith } else { 45429566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4544273d9f13SBarry Smith } 45453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4546273d9f13SBarry Smith } 4547195d93cdSBarry Smith 4548127ca0efSMatthew Knepley /*@C 45490ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4550127ca0efSMatthew Knepley 45512ef1f0ffSBarry Smith Not Collective 4552127ca0efSMatthew Knepley 4553127ca0efSMatthew Knepley Input Parameter: 455411a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4555127ca0efSMatthew Knepley 4556127ca0efSMatthew Knepley Output Parameters: 455711a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 455811a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 45592ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4560127ca0efSMatthew Knepley 45610ab4885dSBarry Smith Level: intermediate 45620ab4885dSBarry Smith 456311a5261eSBarry Smith Note: 45642ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 45652ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 45662ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4567127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4568127ca0efSMatthew Knepley 4569ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4570127ca0efSMatthew Knepley @*/ 4571d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4572d71ae5a4SJacob Faibussowitsch { 4573195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 457404cf37c7SBarry Smith PetscBool flg; 4575b1d57f15SBarry Smith 4576195d93cdSBarry Smith PetscFunctionBegin; 45779566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 457828b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 457921e72a00SBarry Smith if (Ad) *Ad = a->A; 458021e72a00SBarry Smith if (Ao) *Ao = a->B; 458121e72a00SBarry Smith if (colmap) *colmap = a->garray; 45823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4583195d93cdSBarry Smith } 4584a2243be0SBarry Smith 4585d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4586d71ae5a4SJacob Faibussowitsch { 4587110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 45889b8102ccSHong Zhang PetscInt *indx; 4589110bb6e1SHong Zhang PetscScalar *values; 4590421ddf4dSJunchao Zhang MatType rootType; 45919b8102ccSHong Zhang 45929b8102ccSHong Zhang PetscFunctionBegin; 45939566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4594110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4595110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4596110bb6e1SHong Zhang 459748a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4598a22543b6SHong Zhang /* Check sum(n) = N */ 4599462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 460008401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4601a22543b6SHong Zhang 46029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46039b8102ccSHong Zhang rstart -= m; 46049b8102ccSHong Zhang 4605d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46069b8102ccSHong Zhang for (i = 0; i < m; i++) { 46079566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46089566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46099566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46109b8102ccSHong Zhang } 46119b8102ccSHong Zhang 46129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46149566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46159566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46169566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46179566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46199566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4620d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46219566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46229b8102ccSHong Zhang } 46239b8102ccSHong Zhang 4624110bb6e1SHong Zhang /* numeric phase */ 46259566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46269b8102ccSHong Zhang for (i = 0; i < m; i++) { 46279566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46289b8102ccSHong Zhang Ii = i + rstart; 46299566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46309566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46319b8102ccSHong Zhang } 46329566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46339566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4635c5d6d63eSBarry Smith } 4636c5d6d63eSBarry Smith 463749abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data) 4638d71ae5a4SJacob Faibussowitsch { 463949abdd8aSBarry Smith Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data; 464051a7d1a8SHong Zhang 464151a7d1a8SHong Zhang PetscFunctionBegin; 46423ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46439566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46449566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 46459566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 46469566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 46479566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 46489566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 46499566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 46509566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 46519566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 46529566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 46539566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 46549566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 46559566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 46569566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 46573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 465851a7d1a8SHong Zhang } 465951a7d1a8SHong Zhang 4660c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4661c6db04a5SJed Brown #include <petscbt.h> 46624ebed01fSBarry Smith 4663d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4664d71ae5a4SJacob Faibussowitsch { 4665ce94432eSBarry Smith MPI_Comm comm; 466655d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4667b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 46686497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 46696497c311SBarry Smith PetscMPIInt proc, k; 4670b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 46716497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4672b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 467355d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 467455d1abb9SHong Zhang MPI_Status *status; 4675fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4676dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 467755d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4678776b82aeSLisandro Dalcin PetscContainer container; 467955d1abb9SHong Zhang 468055d1abb9SHong Zhang PetscFunctionBegin; 46819566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 46829566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 46833c2c1871SHong Zhang 46849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 46859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 468655d1abb9SHong Zhang 46879566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 468828b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 46899566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 46909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4691fff043a9SJunchao Zhang aa = a_a; 4692bf0cc555SLisandro Dalcin 469355d1abb9SHong Zhang bi = merge->bi; 469455d1abb9SHong Zhang bj = merge->bj; 469555d1abb9SHong Zhang buf_ri = merge->buf_ri; 469655d1abb9SHong Zhang buf_rj = merge->buf_rj; 469755d1abb9SHong Zhang 46989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 46997a2fc3feSBarry Smith owners = merge->rowmap->range; 470055d1abb9SHong Zhang len_s = merge->len_s; 470155d1abb9SHong Zhang 470255d1abb9SHong Zhang /* send and recv matrix values */ 47039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47049566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 470555d1abb9SHong Zhang 47069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 470755d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 470855d1abb9SHong Zhang if (!len_s[proc]) continue; 470955d1abb9SHong Zhang i = owners[proc]; 47106497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 471155d1abb9SHong Zhang k++; 471255d1abb9SHong Zhang } 471355d1abb9SHong Zhang 47149566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47159566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47169566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 471755d1abb9SHong Zhang 47189566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47199566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 472055d1abb9SHong Zhang 472155d1abb9SHong Zhang /* insert mat values of mpimat */ 47229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47239566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 472455d1abb9SHong Zhang 472555d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 472655d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4727f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 472855d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4729a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 473055d1abb9SHong Zhang } 473155d1abb9SHong Zhang 473255d1abb9SHong Zhang /* set values of ba */ 47337a2fc3feSBarry Smith m = merge->rowmap->n; 473455d1abb9SHong Zhang for (i = 0; i < m; i++) { 473555d1abb9SHong Zhang arow = owners[rank] + i; 473655d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 473755d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47389566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 473955d1abb9SHong Zhang 474055d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 474155d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 474255d1abb9SHong Zhang aj = a->j + ai[arow]; 4743fff043a9SJunchao Zhang aa = a_a + ai[arow]; 474455d1abb9SHong Zhang nextaj = 0; 474555d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 474655d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 474755d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 474855d1abb9SHong Zhang } 474955d1abb9SHong Zhang } 475055d1abb9SHong Zhang 475155d1abb9SHong Zhang /* add received vals into ba */ 475255d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 475355d1abb9SHong Zhang /* i-th row */ 475455d1abb9SHong Zhang if (i == *nextrow[k]) { 475555d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4756f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4757f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 475855d1abb9SHong Zhang nextaj = 0; 475955d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 476055d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 476155d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 476255d1abb9SHong Zhang } 476355d1abb9SHong Zhang } 47649371c9d4SSatish Balay nextrow[k]++; 47659371c9d4SSatish Balay nextai[k]++; 476655d1abb9SHong Zhang } 476755d1abb9SHong Zhang } 47689566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 476955d1abb9SHong Zhang } 47709566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 47719566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 47729566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 477355d1abb9SHong Zhang 47749566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 47759566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 47769566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 47779566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 47789566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 478055d1abb9SHong Zhang } 478138f152feSBarry Smith 4782d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4783d71ae5a4SJacob Faibussowitsch { 478455a3bba9SHong Zhang Mat B_mpi; 4785c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4786b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4787b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4788d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 47896497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4790c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4791b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 479255d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 479358cb9c82SHong Zhang MPI_Status *status; 47940298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4795be0fcf8dSHong Zhang PetscBT lnkbt; 479651a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4797776b82aeSLisandro Dalcin PetscContainer container; 479802c68681SHong Zhang 4799e5f2cdd8SHong Zhang PetscFunctionBegin; 48009566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48013c2c1871SHong Zhang 480238f152feSBarry Smith /* make sure it is a PETSc comm */ 48039566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 480655d1abb9SHong Zhang 48079566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4809e5f2cdd8SHong Zhang 48106abd8857SHong Zhang /* determine row ownership */ 48119566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48149566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48159566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 481855d1abb9SHong Zhang 48197a2fc3feSBarry Smith m = merge->rowmap->n; 48207a2fc3feSBarry Smith owners = merge->rowmap->range; 48216abd8857SHong Zhang 48226abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48233e06a4e6SHong Zhang len_s = merge->len_s; 482451a7d1a8SHong Zhang 48252257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4826c2234fe3SHong Zhang merge->nsend = 0; 48276497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 48282257cef7SHong Zhang len_si[proc] = 0; 48293e06a4e6SHong Zhang if (proc == rank) { 48306abd8857SHong Zhang len_s[proc] = 0; 48313e06a4e6SHong Zhang } else { 48326497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 48336497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 48343e06a4e6SHong Zhang } 48353e06a4e6SHong Zhang if (len_s[proc]) { 4836c2234fe3SHong Zhang merge->nsend++; 48372257cef7SHong Zhang nrows = 0; 48382257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48392257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48402257cef7SHong Zhang } 48416497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 48422257cef7SHong Zhang len += len_si[proc]; 4843409913e3SHong Zhang } 484458cb9c82SHong Zhang } 4845409913e3SHong Zhang 48462257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 48479566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 48489566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4849671beff6SHong Zhang 48503e06a4e6SHong Zhang /* post the Irecv of j-structure */ 48519566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 48529566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 485302c68681SHong Zhang 48543e06a4e6SHong Zhang /* post the Isend of j-structure */ 48559566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 48563e06a4e6SHong Zhang 48576497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4858409913e3SHong Zhang if (!len_s[proc]) continue; 485902c68681SHong Zhang i = owners[proc]; 48606497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 486151a7d1a8SHong Zhang k++; 486251a7d1a8SHong Zhang } 486351a7d1a8SHong Zhang 48643e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 48659566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 48669566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 486702c68681SHong Zhang 486802c68681SHong Zhang /* send and recv i-structure */ 48699566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 48709566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 487102c68681SHong Zhang 48729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 48733e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 48746497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 487502c68681SHong Zhang if (!len_s[proc]) continue; 48763e06a4e6SHong Zhang /* form outgoing message for i-structure: 48773e06a4e6SHong Zhang buf_si[0]: nrows to be sent 48783e06a4e6SHong Zhang [1:nrows]: row index (global) 48793e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 48803e06a4e6SHong Zhang */ 48812257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 48823e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 48833e06a4e6SHong Zhang buf_si[0] = nrows; 48843e06a4e6SHong Zhang buf_si_i[0] = 0; 48853e06a4e6SHong Zhang nrows = 0; 48863e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48873e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 48883e06a4e6SHong Zhang if (anzi) { 48893e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 48903e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 48913e06a4e6SHong Zhang nrows++; 48923e06a4e6SHong Zhang } 48933e06a4e6SHong Zhang } 48946497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 489502c68681SHong Zhang k++; 48962257cef7SHong Zhang buf_si += len_si[proc]; 489702c68681SHong Zhang } 48982257cef7SHong Zhang 48999566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49009566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 490102c68681SHong Zhang 49029566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 490348a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49043e06a4e6SHong Zhang 49059566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49069566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49079566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49089566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49099566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49109566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49119566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 491258cb9c82SHong Zhang 4913bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 491458cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 491658cb9c82SHong Zhang bi[0] = 0; 491758cb9c82SHong Zhang 4918be0fcf8dSHong Zhang /* create and initialize a linked list */ 4919be0fcf8dSHong Zhang nlnk = N + 1; 49209566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 492158cb9c82SHong Zhang 4922bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4923bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49249566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49252205254eSKarl Rupp 492658cb9c82SHong Zhang current_space = free_space; 492758cb9c82SHong Zhang 4928bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49299566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49301d79065fSBarry Smith 49313e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49322257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49333e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49343e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4935a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49363e06a4e6SHong Zhang } 49372257cef7SHong Zhang 4938d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4939bcc1bcd5SHong Zhang len = 0; 494058cb9c82SHong Zhang for (i = 0; i < m; i++) { 494158cb9c82SHong Zhang bnzi = 0; 494258cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 494358cb9c82SHong Zhang arow = owners[rank] + i; 494458cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 494558cb9c82SHong Zhang aj = a->j + ai[arow]; 49469566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 494758cb9c82SHong Zhang bnzi += nlnk; 494858cb9c82SHong Zhang /* add received col data into lnk */ 494951a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 495055d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 49513e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 49523e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 49539566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 49543e06a4e6SHong Zhang bnzi += nlnk; 49559371c9d4SSatish Balay nextrow[k]++; 49569371c9d4SSatish Balay nextai[k]++; 49573e06a4e6SHong Zhang } 495858cb9c82SHong Zhang } 4959bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 496058cb9c82SHong Zhang 496158cb9c82SHong Zhang /* if free space is not available, make more free space */ 496248a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 496358cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 49649566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 49659566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 4966bcc1bcd5SHong Zhang 496758cb9c82SHong Zhang current_space->array += bnzi; 496858cb9c82SHong Zhang current_space->local_used += bnzi; 496958cb9c82SHong Zhang current_space->local_remaining -= bnzi; 497058cb9c82SHong Zhang 497158cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 497258cb9c82SHong Zhang } 4973bcc1bcd5SHong Zhang 49749566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 4975bcc1bcd5SHong Zhang 49769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 49779566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 49789566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 4979409913e3SHong Zhang 4980bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 49819566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 49829566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 498354b84b50SHong Zhang if (n == PETSC_DECIDE) { 49849566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 498554b84b50SHong Zhang } else { 49869566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 498754b84b50SHong Zhang } 49889566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 49899566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 49909566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 4991d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 49929566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 499358cb9c82SHong Zhang 499490431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 49956abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 4996affca5deSHong Zhang merge->bi = bi; 4997affca5deSHong Zhang merge->bj = bj; 499802c68681SHong Zhang merge->buf_ri = buf_ri; 499902c68681SHong Zhang merge->buf_rj = buf_rj; 50000298fd71SBarry Smith merge->coi = NULL; 50010298fd71SBarry Smith merge->coj = NULL; 50020298fd71SBarry Smith merge->owners_co = NULL; 5003affca5deSHong Zhang 50049566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5005bf0cc555SLisandro Dalcin 5006affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50079566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50089566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 500949abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50109566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50119566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5012affca5deSHong Zhang *mpimat = B_mpi; 501338f152feSBarry Smith 50149566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5016e5f2cdd8SHong Zhang } 501725616d81SHong Zhang 5018cc4c1da9SBarry Smith /*@ 501911a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5020d4036a1aSHong Zhang matrices from each processor 5021d4036a1aSHong Zhang 5022d083f849SBarry Smith Collective 5023d4036a1aSHong Zhang 5024d4036a1aSHong Zhang Input Parameters: 5025d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5026d4036a1aSHong Zhang . seqmat - the input sequential matrices 502711a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 502811a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 502911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5030d4036a1aSHong Zhang 5031d4036a1aSHong Zhang Output Parameter: 5032d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5033d4036a1aSHong Zhang 5034d4036a1aSHong Zhang Level: advanced 5035d4036a1aSHong Zhang 503611a5261eSBarry Smith Note: 5037d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5038d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5039b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 50402ef1f0ffSBarry Smith 50411cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5042d4036a1aSHong Zhang @*/ 5043d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5044d71ae5a4SJacob Faibussowitsch { 50457e63b356SHong Zhang PetscMPIInt size; 504655d1abb9SHong Zhang 504755d1abb9SHong Zhang PetscFunctionBegin; 50489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 50497e63b356SHong Zhang if (size == 1) { 50509566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 50517e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 50529566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 50537e63b356SHong Zhang } else { 50549566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 50557e63b356SHong Zhang } 50569566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50587e63b356SHong Zhang } 50599566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 506048a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 50619566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 50629566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 506455d1abb9SHong Zhang } 50654ebed01fSBarry Smith 5066bc08b0f1SBarry Smith /*@ 50672920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 50688a9c020eSBarry Smith 50698a9c020eSBarry Smith Not Collective 50708a9c020eSBarry Smith 50712fe279fdSBarry Smith Input Parameter: 507220f4b53cSBarry Smith . A - the matrix 50738a9c020eSBarry Smith 50748a9c020eSBarry Smith Output Parameter: 50758a9c020eSBarry Smith . A_loc - the local sequential matrix generated 50768a9c020eSBarry Smith 50778a9c020eSBarry Smith Level: developer 50788a9c020eSBarry Smith 50798a9c020eSBarry Smith Notes: 50802920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 50812920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 50822920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 50832920cce0SJacob Faibussowitsch 508411a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 50858a9c020eSBarry Smith 50862920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 50872920cce0SJacob Faibussowitsch 508811a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 50898a9c020eSBarry Smith 50901cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 50918a9c020eSBarry Smith @*/ 5092d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5093d71ae5a4SJacob Faibussowitsch { 50948a9c020eSBarry Smith PetscBool mpi; 50958a9c020eSBarry Smith 50968a9c020eSBarry Smith PetscFunctionBegin; 50978a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 50988a9c020eSBarry Smith if (mpi) { 50998a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51008a9c020eSBarry Smith } else { 51018a9c020eSBarry Smith *A_loc = A; 51028a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51038a9c020eSBarry Smith } 51043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51058a9c020eSBarry Smith } 51068a9c020eSBarry Smith 51078a9c020eSBarry Smith /*@ 51082920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 510925616d81SHong Zhang 511032fba14fSHong Zhang Not Collective 511125616d81SHong Zhang 511225616d81SHong Zhang Input Parameters: 511325616d81SHong Zhang + A - the matrix 511411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 511525616d81SHong Zhang 511625616d81SHong Zhang Output Parameter: 511725616d81SHong Zhang . A_loc - the local sequential matrix generated 511825616d81SHong Zhang 511925616d81SHong Zhang Level: developer 512025616d81SHong Zhang 512177c65a98SStefano Zampini Notes: 51222920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51232920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51242920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51252920cce0SJacob Faibussowitsch 512611a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51278a9c020eSBarry Smith 51282920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51292920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51302920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51312920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 513277c65a98SStefano Zampini 51331cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 513425616d81SHong Zhang @*/ 5135d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5136d71ae5a4SJacob Faibussowitsch { 513701b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5138b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5139b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5140ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5141ce496241SStefano Zampini PetscScalar *ca, *cam; 514277c65a98SStefano Zampini PetscMPIInt size; 5143d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51445a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 51458661ff28SBarry Smith PetscBool match; 514625616d81SHong Zhang 514725616d81SHong Zhang PetscFunctionBegin; 51489566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 514928b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 51509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 515177c65a98SStefano Zampini if (size == 1) { 515277c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 51539566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 515477c65a98SStefano Zampini *A_loc = mpimat->A; 515577c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 51569566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 515777c65a98SStefano Zampini } 51583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 515977c65a98SStefano Zampini } 516070a9ba44SHong Zhang 51619566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5162f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5163f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 51649371c9d4SSatish Balay ai = a->i; 51659371c9d4SSatish Balay aj = a->j; 51669371c9d4SSatish Balay bi = b->i; 51679371c9d4SSatish Balay bj = b->j; 51689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 51699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5170ce496241SStefano Zampini aa = aav; 5171ce496241SStefano Zampini ba = bav; 517201b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5174dea91ad1SHong Zhang ci[0] = 0; 5175ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 51769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 51779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5178dea91ad1SHong Zhang k = 0; 517901b7ae99SHong Zhang for (i = 0; i < am; i++) { 51805a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 51815a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 518201b7ae99SHong Zhang /* off-diagonal portion of A */ 51835a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 51845a7d977cSHong Zhang col = cmap[*bj]; 51855a7d977cSHong Zhang if (col >= cstart) break; 51869371c9d4SSatish Balay cj[k] = col; 51879371c9d4SSatish Balay bj++; 51885a7d977cSHong Zhang ca[k++] = *ba++; 51895a7d977cSHong Zhang } 51905a7d977cSHong Zhang /* diagonal portion of A */ 51915a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 51925a7d977cSHong Zhang cj[k] = cstart + *aj++; 51935a7d977cSHong Zhang ca[k++] = *aa++; 51945a7d977cSHong Zhang } 51955a7d977cSHong Zhang /* off-diagonal portion of A */ 51965a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 51975a7d977cSHong Zhang cj[k] = cmap[*bj++]; 51985a7d977cSHong Zhang ca[k++] = *ba++; 51995a7d977cSHong Zhang } 520025616d81SHong Zhang } 5201dea91ad1SHong Zhang /* put together the new matrix */ 52029566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5203dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5204dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5205dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5206e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5207e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5208dea91ad1SHong Zhang mat->nonew = 0; 52095a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52105a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5211fff043a9SJunchao Zhang ci = mat->i; 5212fff043a9SJunchao Zhang cj = mat->j; 52139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52145a7d977cSHong Zhang for (i = 0; i < am; i++) { 52155a7d977cSHong Zhang /* off-diagonal portion of A */ 52165a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52175a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52185a7d977cSHong Zhang col = cmap[*bj]; 52195a7d977cSHong Zhang if (col >= cstart) break; 52209371c9d4SSatish Balay *cam++ = *ba++; 52219371c9d4SSatish Balay bj++; 52225a7d977cSHong Zhang } 52235a7d977cSHong Zhang /* diagonal portion of A */ 5224ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5225a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52265a7d977cSHong Zhang /* off-diagonal portion of A */ 5227f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52289371c9d4SSatish Balay *cam++ = *ba++; 52299371c9d4SSatish Balay bj++; 5230f33d1a9aSHong Zhang } 52315a7d977cSHong Zhang } 52329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 523398921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52359566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 523825616d81SHong Zhang } 523925616d81SHong Zhang 5240ed502f03SStefano Zampini /*@ 524111a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52424cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5243ed502f03SStefano Zampini 5244ed502f03SStefano Zampini Not Collective 5245ed502f03SStefano Zampini 5246ed502f03SStefano Zampini Input Parameters: 5247ed502f03SStefano Zampini + A - the matrix 524811a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5249ed502f03SStefano Zampini 5250d8d19677SJose E. Roman Output Parameters: 52512ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5252ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5253ed502f03SStefano Zampini 5254ed502f03SStefano Zampini Level: developer 5255ed502f03SStefano Zampini 525611a5261eSBarry Smith Note: 52572ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 52584cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5259ed502f03SStefano Zampini 52601cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5261ed502f03SStefano Zampini @*/ 5262d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5263d71ae5a4SJacob Faibussowitsch { 5264ed502f03SStefano Zampini Mat Ao, Ad; 5265ed502f03SStefano Zampini const PetscInt *cmap; 5266ed502f03SStefano Zampini PetscMPIInt size; 5267ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5268ed502f03SStefano Zampini 5269ed502f03SStefano Zampini PetscFunctionBegin; 52709566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 52719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5272ed502f03SStefano Zampini if (size == 1) { 5273ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52749566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5275ed502f03SStefano Zampini *A_loc = Ad; 5276ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52779566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5278ed502f03SStefano Zampini } 52799566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 52803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5281ed502f03SStefano Zampini } 52829566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 52839566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5284ed502f03SStefano Zampini if (f) { 52859566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5286ed502f03SStefano Zampini } else { 5287ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5288ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5289ed502f03SStefano Zampini Mat_SeqAIJ *c; 5290ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5291ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5292ed502f03SStefano Zampini PetscInt *ci, *cj; 5293ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5294ed502f03SStefano Zampini PetscScalar *ca; 5295ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5296ed502f03SStefano Zampini 52979566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 52989566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 52999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5301ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5302ed502f03SStefano Zampini PetscInt k; 53039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5306ed502f03SStefano Zampini ci[0] = 0; 5307ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5308ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5309ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5310ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5311ed502f03SStefano Zampini /* diagonal portion of A */ 5312ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5313ed502f03SStefano Zampini cj[k] = *aj++; 5314ed502f03SStefano Zampini ca[k] = *aa++; 5315ed502f03SStefano Zampini } 5316ed502f03SStefano Zampini /* off-diagonal portion of A */ 5317ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5318ed502f03SStefano Zampini cj[k] = dn + *bj++; 5319ed502f03SStefano Zampini ca[k] = *ba++; 5320ed502f03SStefano Zampini } 5321ed502f03SStefano Zampini } 5322ed502f03SStefano Zampini /* put together the new matrix */ 53239566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5324ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5325ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5326ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5327ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5328ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5329ed502f03SStefano Zampini c->nonew = 0; 53309566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5331ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5333ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5334ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5335ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5336ed502f03SStefano Zampini /* diagonal portion of A */ 5337ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5338ed502f03SStefano Zampini /* off-diagonal portion of A */ 5339ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5340ed502f03SStefano Zampini } 53419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 534298921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5345ed502f03SStefano Zampini if (glob) { 5346ed502f03SStefano Zampini PetscInt cst, *gidx; 5347ed502f03SStefano Zampini 53489566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 53499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5350ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5351ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 53529566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5353ed502f03SStefano Zampini } 5354ed502f03SStefano Zampini } 53559566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 53563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5357ed502f03SStefano Zampini } 5358ed502f03SStefano Zampini 535932fba14fSHong Zhang /*@C 536011a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 536132fba14fSHong Zhang 536232fba14fSHong Zhang Not Collective 536332fba14fSHong Zhang 536432fba14fSHong Zhang Input Parameters: 536532fba14fSHong Zhang + A - the matrix 536611a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 536720f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 536820f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 536932fba14fSHong Zhang 537032fba14fSHong Zhang Output Parameter: 537132fba14fSHong Zhang . A_loc - the local sequential matrix generated 537232fba14fSHong Zhang 537332fba14fSHong Zhang Level: developer 537432fba14fSHong Zhang 53751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 537632fba14fSHong Zhang @*/ 5377d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5378d71ae5a4SJacob Faibussowitsch { 537932fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 538032fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 538132fba14fSHong Zhang IS isrowa, iscola; 538232fba14fSHong Zhang Mat *aloc; 53834a2b5492SBarry Smith PetscBool match; 538432fba14fSHong Zhang 538532fba14fSHong Zhang PetscFunctionBegin; 53869566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 538728b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 53889566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 538932fba14fSHong Zhang if (!row) { 53909371c9d4SSatish Balay start = A->rmap->rstart; 53919371c9d4SSatish Balay end = A->rmap->rend; 53929566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 539332fba14fSHong Zhang } else { 539432fba14fSHong Zhang isrowa = *row; 539532fba14fSHong Zhang } 539632fba14fSHong Zhang if (!col) { 5397d0f46423SBarry Smith start = A->cmap->rstart; 539832fba14fSHong Zhang cmap = a->garray; 5399d0f46423SBarry Smith nzA = a->A->cmap->n; 5400d0f46423SBarry Smith nzB = a->B->cmap->n; 54019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 540232fba14fSHong Zhang ncols = 0; 540332fba14fSHong Zhang for (i = 0; i < nzB; i++) { 540432fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 540532fba14fSHong Zhang else break; 540632fba14fSHong Zhang } 540732fba14fSHong Zhang imark = i; 540832fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 540932fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54109566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 541132fba14fSHong Zhang } else { 541232fba14fSHong Zhang iscola = *col; 541332fba14fSHong Zhang } 541432fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 541632fba14fSHong Zhang aloc[0] = *A_loc; 541732fba14fSHong Zhang } 54189566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5419109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54209566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5421109e0772SStefano Zampini } 542232fba14fSHong Zhang *A_loc = aloc[0]; 54239566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 542448a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 542548a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54269566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 542832fba14fSHong Zhang } 542932fba14fSHong Zhang 54305c65b9ecSFande Kong /* 54315c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54325c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54335c65b9ecSFande Kong * on a global size. 54345c65b9ecSFande Kong * */ 5435ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5436d71ae5a4SJacob Faibussowitsch { 54375c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5438f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5439131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5440131c27b5Sprj- PetscMPIInt owner; 54415c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54425c65b9ecSFande Kong const PetscInt *lrowindices; 54435c65b9ecSFande Kong PetscSF sf, osf; 54445c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 54455c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 54465c65b9ecSFande Kong MPI_Comm comm; 54475c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5448fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 54495c65b9ecSFande Kong 54505c65b9ecSFande Kong PetscFunctionBegin; 54519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 54525c65b9ecSFande Kong /* plocalsize is the number of roots 54535c65b9ecSFande Kong * nrows is the number of leaves 54545c65b9ecSFande Kong * */ 54559566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 54569566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 54579566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 54589566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 54595c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 54605c65b9ecSFande Kong /* Find a remote index and an owner for a row 54615c65b9ecSFande Kong * The row could be local or remote 54625c65b9ecSFande Kong * */ 546334bcad68SFande Kong owner = 0; 546434bcad68SFande Kong lidx = 0; 54659566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 54665c65b9ecSFande Kong iremote[i].index = lidx; 54675c65b9ecSFande Kong iremote[i].rank = owner; 54685c65b9ecSFande Kong } 54695c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 54709566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5471f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 54725c65b9ecSFande Kong * offsets 54735c65b9ecSFande Kong * */ 54749566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 54759566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 54769566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5477bc8e477aSFande Kong 54789566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 54799566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 54809566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 54815c65b9ecSFande Kong roffsets[0] = 0; 54825c65b9ecSFande Kong roffsets[1] = 0; 54835c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 54844cf0e950SBarry Smith /* diagonal */ 54855c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 54864cf0e950SBarry Smith /* off-diagonal */ 54875c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 54885c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 54895c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 54905c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 54915c65b9ecSFande Kong } 54929566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 54939566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 54945c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 54959566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 54969566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 54979566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 54989566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 54999566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55009566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55019566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55025c65b9ecSFande Kong dntotalcols = 0; 55035c65b9ecSFande Kong ontotalcols = 0; 5504bc8e477aSFande Kong ncol = 0; 55055c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55065c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5507bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55084cf0e950SBarry Smith /* diagonal */ 55095c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55104cf0e950SBarry Smith /* off-diagonal */ 55115c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55125c65b9ecSFande Kong } 55135c65b9ecSFande Kong /* We do not need to figure the right number of columns 55145c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55155c65b9ecSFande Kong * */ 55169566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55179566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55189566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55195c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55204cf0e950SBarry Smith /* diagonal */ 55219566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55224cf0e950SBarry Smith /* off-diagonal */ 55239566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55244cf0e950SBarry Smith /* diagonal */ 55259566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55264cf0e950SBarry Smith /* off-diagonal */ 55279566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55285c65b9ecSFande Kong dntotalcols = 0; 55295c65b9ecSFande Kong ontotalcols = 0; 55305c65b9ecSFande Kong ntotalcols = 0; 55315c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 553234bcad68SFande Kong owner = 0; 55339566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55345c65b9ecSFande Kong /* Set iremote for diag matrix */ 55355c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55365c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55375c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55385c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55395c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55405c65b9ecSFande Kong } 55414cf0e950SBarry Smith /* off-diagonal */ 55425c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55435c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55445c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 55455c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 55465c65b9ecSFande Kong } 55475c65b9ecSFande Kong } 55489566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 55499566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 55509566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 55519566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 55525c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 55535c65b9ecSFande Kong * Diag matrix 55545c65b9ecSFande Kong * */ 55559566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55569566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55579566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 55585c65b9ecSFande Kong 55599566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 55604cf0e950SBarry Smith /* off-diagonal */ 55619566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 55629566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 55639566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 55649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 55659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 55664cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 55679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 55689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 55699566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 55705c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 55715c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 55729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55735c65b9ecSFande Kong /* We want P_oth store global indices */ 55749566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 55755c65b9ecSFande Kong /* Use memory scalable approach */ 55769566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 55779566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 55789566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 55799566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55805c65b9ecSFande Kong /* Convert back to local indices */ 55815c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 55829566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 55835c65b9ecSFande Kong nout = 0; 55849566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 558508401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 55869566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 55875c65b9ecSFande Kong /* Exchange values */ 55889566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 55899566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 55909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 55919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 55925c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 55935c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 55949566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 55959566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 55965c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 55979566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 55989566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 55999566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56009566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56025c65b9ecSFande Kong } 56035c65b9ecSFande Kong 56045c65b9ecSFande Kong /* 56055c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56065c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56075c65b9ecSFande Kong * */ 5608d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5609d71ae5a4SJacob Faibussowitsch { 56105c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5611bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5612bc8e477aSFande Kong IS rows, map; 5613bc8e477aSFande Kong PetscHMapI hamp; 5614bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56155c65b9ecSFande Kong MPI_Comm comm; 56165c65b9ecSFande Kong PetscSF sf, osf; 5617bc8e477aSFande Kong PetscBool has; 56185c65b9ecSFande Kong 56195c65b9ecSFande Kong PetscFunctionBegin; 56209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56219566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56225c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56235c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56245c65b9ecSFande Kong * */ 56255c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56265c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5627eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56289566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5629bc8e477aSFande Kong count = 0; 5630bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5631bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5632bc8e477aSFande Kong key = a->garray[i] / dof; 56339566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5634bc8e477aSFande Kong if (!has) { 5635bc8e477aSFande Kong mapping[i] = count; 56369566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5637bc8e477aSFande Kong } else { 5638bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5639bc8e477aSFande Kong mapping[i] = count - 1; 56405c65b9ecSFande Kong } 5641bc8e477aSFande Kong } 56429566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56439566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5644eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 56459566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 56465c65b9ecSFande Kong off = 0; 56479566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 56489566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 56499566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 56509566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 56515c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 56529566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 56539566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 56549566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 56559566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 56569566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 56575c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 56585c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 565935cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5660fff043a9SJunchao Zhang */ 5661fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5662fff043a9SJunchao Zhang 56639566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 56649566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 566508401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 56665c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 56675c65b9ecSFande Kong /* Update values in place */ 56689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56709566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56719566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56766718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 56779566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56795c65b9ecSFande Kong } 56805c65b9ecSFande Kong 568125616d81SHong Zhang /*@C 568220f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 568325616d81SHong Zhang 5684c3339decSBarry Smith Collective 568525616d81SHong Zhang 568625616d81SHong Zhang Input Parameters: 568711a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 568811a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 568911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 569025616d81SHong Zhang 5691f1a722f8SMatthew G. Knepley Output Parameters: 569227430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 569327430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5694f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 569525616d81SHong Zhang 569625616d81SHong Zhang Level: developer 569725616d81SHong Zhang 569820f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 569925616d81SHong Zhang @*/ 5700d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5701d71ae5a4SJacob Faibussowitsch { 5702899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5703b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 570425616d81SHong Zhang IS isrowb, iscolb; 57050298fd71SBarry Smith Mat *bseq = NULL; 570625616d81SHong Zhang 570725616d81SHong Zhang PetscFunctionBegin; 570820f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 570920f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57109566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 571125616d81SHong Zhang 571225616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5713d0f46423SBarry Smith start = A->cmap->rstart; 571425616d81SHong Zhang cmap = a->garray; 5715d0f46423SBarry Smith nzA = a->A->cmap->n; 5716d0f46423SBarry Smith nzB = a->B->cmap->n; 57179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 571825616d81SHong Zhang ncols = 0; 57190390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 572025616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 572125616d81SHong Zhang else break; 572225616d81SHong Zhang } 572325616d81SHong Zhang imark = i; 57240390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57250390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57269566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57279566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 572825616d81SHong Zhang } else { 572908401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57309371c9d4SSatish Balay isrowb = *rowb; 57319371c9d4SSatish Balay iscolb = *colb; 57329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 573325616d81SHong Zhang bseq[0] = *B_seq; 573425616d81SHong Zhang } 57359566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 573625616d81SHong Zhang *B_seq = bseq[0]; 57379566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 573825616d81SHong Zhang if (!rowb) { 57399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 574025616d81SHong Zhang } else { 574125616d81SHong Zhang *rowb = isrowb; 574225616d81SHong Zhang } 574325616d81SHong Zhang if (!colb) { 57449566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 574525616d81SHong Zhang } else { 574625616d81SHong Zhang *colb = iscolb; 574725616d81SHong Zhang } 57489566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 57493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 575025616d81SHong Zhang } 5751429d309bSHong Zhang 5752f8487c73SHong Zhang /* 575327430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 575401b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5755429d309bSHong Zhang 5756c3339decSBarry Smith Collective 5757429d309bSHong Zhang 5758429d309bSHong Zhang Input Parameters: 575927430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 576027430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5761429d309bSHong Zhang 5762429d309bSHong Zhang Output Parameter: 57630298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 57640298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 57650298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5766598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5767429d309bSHong Zhang 576811a5261eSBarry Smith Developer Note: 576911a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 57706eb45d04SBarry Smith for this matrix. This is not desirable.. 57716eb45d04SBarry Smith 5772429d309bSHong Zhang Level: developer 5773429d309bSHong Zhang 5774f8487c73SHong Zhang */ 57756497c311SBarry Smith 5776d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5777d71ae5a4SJacob Faibussowitsch { 5778899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 57794b8d542aSHong Zhang VecScatter ctx; 5780ce94432eSBarry Smith MPI_Comm comm; 57813515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 57826497c311SBarry Smith PetscMPIInt nrecvs, nsends; 57833515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5784277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 57856497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5786277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5787ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5788ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5789429d309bSHong Zhang 5790429d309bSHong Zhang PetscFunctionBegin; 57919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 57929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5793a7c7454dSHong Zhang 579420f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 579520f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57969566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 57979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5798a6b2eed2SHong Zhang 5799ec07b8f8SHong Zhang if (size == 1) { 5800ec07b8f8SHong Zhang startsj_s = NULL; 5801ec07b8f8SHong Zhang bufa_ptr = NULL; 580252f7967eSHong Zhang *B_oth = NULL; 58033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5804ec07b8f8SHong Zhang } 5805ec07b8f8SHong Zhang 5806fa83eaafSHong Zhang ctx = a->Mvctx; 58074b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58084b8d542aSHong Zhang 58099566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58103515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58119566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58129566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5814ddea5d60SJunchao Zhang rwaits = reqs; 58158e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5816429d309bSHong Zhang 5817b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5818429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5819a6b2eed2SHong Zhang /* i-array */ 5820a6b2eed2SHong Zhang /* post receives */ 58219566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5822a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 582374268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5824e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58256497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5826429d309bSHong Zhang } 5827a6b2eed2SHong Zhang 5828a6b2eed2SHong Zhang /* pack the outgoing message */ 58299566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58302205254eSKarl Rupp 58312205254eSKarl Rupp sstartsj[0] = 0; 58322205254eSKarl Rupp rstartsj[0] = 0; 5833a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58343515ee7fSJunchao Zhang if (nsends) { 58353515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58373515ee7fSJunchao Zhang } 5838a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58393515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5840e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 584187025532SHong Zhang for (j = 0; j < nrows; j++) { 5842d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5843e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58449566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58452205254eSKarl Rupp 5846e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 58472205254eSKarl Rupp 5848e42f35eeSHong Zhang len += ncols; 58499566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5850e42f35eeSHong Zhang } 5851a6b2eed2SHong Zhang k++; 5852429d309bSHong Zhang } 58536497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 58542205254eSKarl Rupp 5855dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5856429d309bSHong Zhang } 585787025532SHong Zhang /* recvs and sends of i-array are completed */ 58589566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 58599566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5860e42f35eeSHong Zhang 5861a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 58629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 58639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5864a6b2eed2SHong Zhang 586587025532SHong Zhang /* create i-array of B_oth */ 58669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 58672205254eSKarl Rupp 586887025532SHong Zhang b_othi[0] = 0; 5869a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5870a6b2eed2SHong Zhang k = 0; 5871a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 58723515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 58733515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 587487025532SHong Zhang for (j = 0; j < nrows; j++) { 587587025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 58769566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5877f91af8c7SBarry Smith k++; 5878a6b2eed2SHong Zhang } 5879dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5880a6b2eed2SHong Zhang } 58819566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5882a6b2eed2SHong Zhang 58836aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 58849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 58859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5886a6b2eed2SHong Zhang 588787025532SHong Zhang /* j-array */ 5888a6b2eed2SHong Zhang /* post receives of j-array */ 5889a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 589087025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 58916497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5892a6b2eed2SHong Zhang } 5893e42f35eeSHong Zhang 5894e42f35eeSHong Zhang /* pack the outgoing message j-array */ 58953515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5896a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5897e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5898a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 589987025532SHong Zhang for (j = 0; j < nrows; j++) { 5900d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5901e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59029566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5903ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59049566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5905e42f35eeSHong Zhang } 590687025532SHong Zhang } 59076497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 590887025532SHong Zhang } 590987025532SHong Zhang 591087025532SHong Zhang /* recvs and sends of j-array are completed */ 59119566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 591287025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5913b7f45c76SHong Zhang sstartsj = *startsj_s; 59141d79065fSBarry Smith rstartsj = *startsj_r; 591587025532SHong Zhang bufa = *bufa_ptr; 59169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5917ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 591887025532SHong Zhang 591987025532SHong Zhang /* a-array */ 592087025532SHong Zhang /* post receives of a-array */ 592187025532SHong Zhang for (i = 0; i < nrecvs; i++) { 592287025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59236497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 592487025532SHong Zhang } 5925e42f35eeSHong Zhang 5926e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59273515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 592887025532SHong Zhang for (i = 0; i < nsends; i++) { 5929e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 593087025532SHong Zhang bufA = bufa + sstartsj[i]; 593187025532SHong Zhang for (j = 0; j < nrows; j++) { 5932d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5933e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59349566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5935ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59369566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5937e42f35eeSHong Zhang } 5938a6b2eed2SHong Zhang } 59396497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5940a6b2eed2SHong Zhang } 594187025532SHong Zhang /* recvs and sends of a-array are completed */ 59429566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59439566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5944a6b2eed2SHong Zhang 594587025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5946dd460d27SBarry Smith Mat_SeqAIJ *b_oth; 5947dd460d27SBarry Smith 5948a6b2eed2SHong Zhang /* put together the new matrix */ 59499566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 5950a6b2eed2SHong Zhang 5951a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5952a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 595387025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 5954e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 5955e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 595687025532SHong Zhang b_oth->nonew = 0; 5957a6b2eed2SHong Zhang 59589566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 5959b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 59609566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 59619566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 5962dea91ad1SHong Zhang } else { 5963b7f45c76SHong Zhang *startsj_s = sstartsj; 59641d79065fSBarry Smith *startsj_r = rstartsj; 596587025532SHong Zhang *bufa_ptr = bufa; 596687025532SHong Zhang } 5967fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 59689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 5969dea91ad1SHong Zhang } 59703515ee7fSJunchao Zhang 59719566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 59729566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 59739566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 59743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5975429d309bSHong Zhang } 5976ccd8e176SBarry Smith 5977cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 5978cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 5979ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 59809779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 5981a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 5982191b95cbSRichard Tran Mills #endif 5983ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 5984cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 59855d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5986cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 59875d7652ecSHong Zhang #endif 5988d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 5989d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 5990d24d4204SJose E. Roman #endif 599163c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 599263c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 599363c07aadSStefano Zampini #endif 59943338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 59953338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 59963338378cSStefano Zampini #endif 5997d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 5998d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 5999d5e393b6SSuyash Tandon #endif 60003d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60013d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60023d0639e7SStefano Zampini #endif 6003d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60044222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60054222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 600617667f90SBarry Smith 6007fc4dec0aSBarry Smith /* 6008fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6009fc4dec0aSBarry Smith 6010fc4dec0aSBarry Smith n p p 60112da392ccSBarry Smith [ ] [ ] [ ] 60122da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60132da392ccSBarry Smith [ ] [ ] [ ] 6014fc4dec0aSBarry Smith 6015fc4dec0aSBarry Smith */ 6016d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6017d71ae5a4SJacob Faibussowitsch { 6018fc4dec0aSBarry Smith Mat At, Bt, Ct; 6019fc4dec0aSBarry Smith 6020fc4dec0aSBarry Smith PetscFunctionBegin; 60219566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60229566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6023fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 60249566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60259566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60267fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60279566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60289566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6030fc4dec0aSBarry Smith } 6031fc4dec0aSBarry Smith 6032d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6033d71ae5a4SJacob Faibussowitsch { 60346718818eSStefano Zampini PetscBool cisdense; 6035fc4dec0aSBarry Smith 6036fc4dec0aSBarry Smith PetscFunctionBegin; 603708401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60389566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60399566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6040d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 604148a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60429566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6043f75ecaa4SHong Zhang 60444222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6046fc4dec0aSBarry Smith } 6047fc4dec0aSBarry Smith 6048d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6049d71ae5a4SJacob Faibussowitsch { 60504222ddf1SHong Zhang Mat_Product *product = C->product; 60514222ddf1SHong Zhang Mat A = product->A, B = product->B; 6052fc4dec0aSBarry Smith 6053fc4dec0aSBarry Smith PetscFunctionBegin; 605420f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 605520f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 60564222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 60574222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 60583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6059fc4dec0aSBarry Smith } 6060fc4dec0aSBarry Smith 6061d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6062d71ae5a4SJacob Faibussowitsch { 60634222ddf1SHong Zhang Mat_Product *product = C->product; 60644222ddf1SHong Zhang 60654222ddf1SHong Zhang PetscFunctionBegin; 606648a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 60673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60684222ddf1SHong Zhang } 6069394ed5ebSJunchao Zhang 607027430b45SBarry Smith /* 607127430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6072394ed5ebSJunchao Zhang 6073394ed5ebSJunchao Zhang Input Parameters: 6074394ed5ebSJunchao Zhang 6075651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6076651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6077394ed5ebSJunchao Zhang 6078158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6079394ed5ebSJunchao Zhang 6080394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6081394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6082394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6083394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6084394ed5ebSJunchao Zhang 6085394ed5ebSJunchao Zhang Similar for Set2. 6086394ed5ebSJunchao Zhang 6087394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6088394ed5ebSJunchao Zhang 6089158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6090394ed5ebSJunchao Zhang 6091394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6092394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6093394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6094394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6095394ed5ebSJunchao Zhang */ 6096d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6097d71ae5a4SJacob Faibussowitsch { 6098394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6099394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6100394ed5ebSJunchao Zhang 6101394ed5ebSJunchao Zhang PetscFunctionBegin; 61029566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6103394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6104394ed5ebSJunchao Zhang i[0] = 0; 6105394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6106394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6107394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6108394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6109394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6110394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6111394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6112394ed5ebSJunchao Zhang j[t] = j1[b1]; 6113394ed5ebSJunchao Zhang imap1[t1] = t; 6114394ed5ebSJunchao Zhang imap2[t2] = t; 6115394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6116394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61179371c9d4SSatish Balay t1++; 61189371c9d4SSatish Balay t2++; 61199371c9d4SSatish Balay t++; 6120394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6121394ed5ebSJunchao Zhang j[t] = j1[b1]; 6122394ed5ebSJunchao Zhang imap1[t1] = t; 6123394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61249371c9d4SSatish Balay t1++; 61259371c9d4SSatish Balay t++; 6126394ed5ebSJunchao Zhang } else { 6127394ed5ebSJunchao Zhang j[t] = j2[b2]; 6128394ed5ebSJunchao Zhang imap2[t2] = t; 6129394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61309371c9d4SSatish Balay t2++; 61319371c9d4SSatish Balay t++; 6132394ed5ebSJunchao Zhang } 6133394ed5ebSJunchao Zhang } 6134394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6135394ed5ebSJunchao Zhang while (b1 < e1) { 6136394ed5ebSJunchao Zhang j[t] = j1[b1]; 6137394ed5ebSJunchao Zhang imap1[t1] = t; 6138394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61399371c9d4SSatish Balay t1++; 61409371c9d4SSatish Balay t++; 6141394ed5ebSJunchao Zhang } 6142394ed5ebSJunchao Zhang while (b2 < e2) { 6143394ed5ebSJunchao Zhang j[t] = j2[b2]; 6144394ed5ebSJunchao Zhang imap2[t2] = t; 6145394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61469371c9d4SSatish Balay t2++; 61479371c9d4SSatish Balay t++; 6148394ed5ebSJunchao Zhang } 61496497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6150394ed5ebSJunchao Zhang } 61513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6152394ed5ebSJunchao Zhang } 6153394ed5ebSJunchao Zhang 615427430b45SBarry Smith /* 615527430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6156394ed5ebSJunchao Zhang 6157394ed5ebSJunchao Zhang Input Parameters: 6158394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6159394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6160394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6161394ed5ebSJunchao Zhang 6162394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6163394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6164394ed5ebSJunchao Zhang 6165394ed5ebSJunchao Zhang Output Parameters: 6166394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6167394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6168394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6169394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6170394ed5ebSJunchao Zhang 6171394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6172158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6173158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6174394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6175394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6176394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6177394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6178394ed5ebSJunchao Zhang 6179394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6180394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6181394ed5ebSJunchao Zhang 6182394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6183394ed5ebSJunchao Zhang 6184158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6185394ed5ebSJunchao Zhang */ 6186d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6187d71ae5a4SJacob Faibussowitsch { 6188394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6189394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6190394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6191394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6192394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6193394ed5ebSJunchao Zhang 6194394ed5ebSJunchao Zhang PetscFunctionBegin; 61959566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 61969566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6197394ed5ebSJunchao Zhang m = rend - rstart; 6198394ed5ebSJunchao Zhang 6199651b1cf9SStefano Zampini /* Skip negative rows */ 6200651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62019371c9d4SSatish Balay if (i[k] >= 0) break; 6202394ed5ebSJunchao Zhang 6203394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6204394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6205394ed5ebSJunchao Zhang */ 6206394ed5ebSJunchao Zhang while (k < n) { 6207394ed5ebSJunchao Zhang row = i[k]; 6208394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62099371c9d4SSatish Balay for (s = k; s < n; s++) 62109371c9d4SSatish Balay if (i[s] != row) break; 6211651b1cf9SStefano Zampini 62121690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6213394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 62141690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 6215394ed5ebSJunchao Zhang } 62169566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6217158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6218394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6219394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6220394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 62218551dd9cSJunchao Zhang PetscCheck(k == s || j[s - 1] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is >= matrix column size %" PetscInt_FMT, j[s - 1], mat->cmap->N); 6222394ed5ebSJunchao Zhang 6223394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6224394ed5ebSJunchao Zhang Atot += mid - k; 6225394ed5ebSJunchao Zhang Btot += s - mid; 6226394ed5ebSJunchao Zhang 6227651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6228394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6229394ed5ebSJunchao Zhang col = j[p]; 62309371c9d4SSatish Balay do { 62311690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 62329371c9d4SSatish Balay p++; 6233651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6234394ed5ebSJunchao Zhang Annz++; 6235394ed5ebSJunchao Zhang } 6236394ed5ebSJunchao Zhang 6237651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6238394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6239394ed5ebSJunchao Zhang col = j[p]; 6240d71ae5a4SJacob Faibussowitsch do { 6241d71ae5a4SJacob Faibussowitsch p++; 6242d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6243394ed5ebSJunchao Zhang Bnnz++; 6244394ed5ebSJunchao Zhang } 6245394ed5ebSJunchao Zhang k = s; 6246394ed5ebSJunchao Zhang } 6247394ed5ebSJunchao Zhang 6248394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6249158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6250158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6251158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6252158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6253394ed5ebSJunchao Zhang 62546aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6255394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6256394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6257394ed5ebSJunchao Zhang k = rowBegin[r]; 6258394ed5ebSJunchao Zhang mid = rowMid[r]; 6259394ed5ebSJunchao Zhang s = rowEnd[r]; 62608e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 62618e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6262394ed5ebSJunchao Zhang Atot += mid - k; 6263394ed5ebSJunchao Zhang Btot += s - mid; 6264394ed5ebSJunchao Zhang 6265394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6266394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6267394ed5ebSJunchao Zhang col = j[p]; 6268394ed5ebSJunchao Zhang q = p; 6269d71ae5a4SJacob Faibussowitsch do { 6270d71ae5a4SJacob Faibussowitsch p++; 6271d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6272394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6273394ed5ebSJunchao Zhang Annz++; 6274394ed5ebSJunchao Zhang } 6275394ed5ebSJunchao Zhang 6276394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6277394ed5ebSJunchao Zhang col = j[p]; 6278394ed5ebSJunchao Zhang q = p; 6279d71ae5a4SJacob Faibussowitsch do { 6280d71ae5a4SJacob Faibussowitsch p++; 6281d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6282394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6283394ed5ebSJunchao Zhang Bnnz++; 6284394ed5ebSJunchao Zhang } 6285394ed5ebSJunchao Zhang } 6286394ed5ebSJunchao Zhang /* Output */ 6287394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6288394ed5ebSJunchao Zhang *Annz_ = Annz; 6289394ed5ebSJunchao Zhang *Atot_ = Atot; 6290394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6291394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6292394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6293394ed5ebSJunchao Zhang *Btot_ = Btot; 6294394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 62953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6296394ed5ebSJunchao Zhang } 6297394ed5ebSJunchao Zhang 629827430b45SBarry Smith /* 629927430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6300158ec288SJunchao Zhang 6301158ec288SJunchao Zhang Input Parameters: 6302158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6303158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6304158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6305651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6306158ec288SJunchao Zhang 6307158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6308158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6309158ec288SJunchao Zhang 6310158ec288SJunchao Zhang Example: 6311158ec288SJunchao Zhang nnz1 = 4 6312158ec288SJunchao Zhang nnz = 6 6313158ec288SJunchao Zhang imap = [1,3,4,5] 6314158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6315158ec288SJunchao Zhang then, 6316158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6317158ec288SJunchao Zhang */ 6318d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6319d71ae5a4SJacob Faibussowitsch { 6320158ec288SJunchao Zhang PetscCount k, p; 6321158ec288SJunchao Zhang 6322158ec288SJunchao Zhang PetscFunctionBegin; 6323158ec288SJunchao Zhang jmap_new[0] = 0; 6324158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6325158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6326158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6327158ec288SJunchao Zhang } 6328158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6330158ec288SJunchao Zhang } 6331158ec288SJunchao Zhang 633249abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data) 63332c4ab24aSJunchao Zhang { 633449abdd8aSBarry Smith MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data; 63352c4ab24aSJunchao Zhang 63362c4ab24aSJunchao Zhang PetscFunctionBegin; 63372c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63382c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63392c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63402c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63412c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63422c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63432c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63442c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63452c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63462c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 63472c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 63482c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 63492c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 63502c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 63512c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 63522c4ab24aSJunchao Zhang } 63532c4ab24aSJunchao Zhang 6354d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6355d71ae5a4SJacob Faibussowitsch { 6356394ed5ebSJunchao Zhang MPI_Comm comm; 6357394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6358394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6359394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6360394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 63612c4ab24aSJunchao Zhang PetscContainer container; 63622c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6363394ed5ebSJunchao Zhang 6364394ed5ebSJunchao Zhang PetscFunctionBegin; 63659566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 63669566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6367cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6368eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6369cbc6b225SStefano Zampini #else 63709566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6371cbc6b225SStefano Zampini #endif 63729566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6373cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6374cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6375cbc6b225SStefano Zampini 63769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 63779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 63789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 63799566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 63809566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 63819566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 63829566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 63839566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 63849566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6385394ed5ebSJunchao Zhang 63866aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6387394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6388394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6389e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6390e8729f6fSJunchao Zhang 6391e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6392394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6393394ed5ebSJunchao Zhang 6394394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6395394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6396394ed5ebSJunchao Zhang will have positive row indices. 6397394ed5ebSJunchao Zhang */ 6398394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 63991690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 64001690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6401f7d195e4SLawrence Mitchell else { 6402f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 64031690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6404f7d195e4SLawrence Mitchell } 6405394ed5ebSJunchao Zhang } 6406394ed5ebSJunchao Zhang 6407da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64089566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6409651b1cf9SStefano Zampini 6410651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6411651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64121690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 64136497c311SBarry Smith PetscCount i1start = k; 6414651b1cf9SStefano Zampini 64151690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 64161690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6417394ed5ebSJunchao Zhang 64188551dd9cSJunchao Zhang PetscCheck(i1 == NULL || i1[n1 - 1] < M, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "COO row index %" PetscInt_FMT " is >= the matrix row size %" PetscInt_FMT, i1[n1 - 1], M); 64198551dd9cSJunchao Zhang 6420394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6421394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6422394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6423394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6424394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6425394ed5ebSJunchao Zhang const PetscInt *ranges; 6426394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6427394ed5ebSJunchao Zhang 64289566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64299566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6430394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6431394ed5ebSJunchao Zhang PetscMPIInt owner; 6432394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6433cbc6b225SStefano Zampini 6434394ed5ebSJunchao Zhang /* Locate a row range */ 6435394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64369566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6437394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6438394ed5ebSJunchao Zhang 64398551dd9cSJunchao Zhang /* Find the first index 'p' in [k,n) with i1[p] belonging to next owner */ 64409566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6441394ed5ebSJunchao Zhang 6442394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6443394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6444394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6445394ed5ebSJunchao Zhang PetscInt *nentries2; 6446394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6447cbc6b225SStefano Zampini 64489566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 64499566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 64509566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 64519566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6452394ed5ebSJunchao Zhang sendto = sendto2; 6453394ed5ebSJunchao Zhang nentries = nentries2; 6454394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6455394ed5ebSJunchao Zhang } 6456394ed5ebSJunchao Zhang sendto[nsend] = owner; 64576497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6458394ed5ebSJunchao Zhang nsend++; 6459394ed5ebSJunchao Zhang k = p; 6460394ed5ebSJunchao Zhang } 6461394ed5ebSJunchao Zhang 6462394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6463394ed5ebSJunchao Zhang PetscSF sf1; 6464394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6465394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6466394ed5ebSJunchao Zhang PetscInt *offsets; 6467394ed5ebSJunchao Zhang PetscSFNode *iremote; 6468394ed5ebSJunchao Zhang 64699566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 64709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 64719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6472394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6473394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6474394ed5ebSJunchao Zhang iremote[k].index = 0; 6475394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 647654c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6477394ed5ebSJunchao Zhang } 64789566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 64799566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 64809566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 64819566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6482e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6483394ed5ebSJunchao Zhang 6484394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6485394ed5ebSJunchao Zhang PetscSF sf2; 6486394ed5ebSJunchao Zhang nroots = nroots2; 6487394ed5ebSJunchao Zhang nleaves = nleaves2; 64889566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 64899566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 64909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6491394ed5ebSJunchao Zhang p = 0; 6492394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 649354c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6494394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6495394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 64966497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6497394ed5ebSJunchao Zhang } 6498394ed5ebSJunchao Zhang } 64999566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6500394ed5ebSJunchao Zhang 6501394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6502394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6503394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65049566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6505834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6506834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6507de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6508de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6509834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6510834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6511834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6512834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6513394ed5ebSJunchao Zhang 65149566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65159566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6516394ed5ebSJunchao Zhang 6517394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6518394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65199566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6520394ed5ebSJunchao Zhang 6521651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6522651b1cf9SStefano Zampini PetscCount *Cperm1; 6523834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6524de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6525651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6526834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6527651b1cf9SStefano Zampini 6528651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6529651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6530651b1cf9SStefano Zampini PetscBool hypre; 653117b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6532651b1cf9SStefano Zampini if (hypre) { 6533651b1cf9SStefano Zampini PetscInt *minj; 6534651b1cf9SStefano Zampini PetscBT hasdiag; 6535651b1cf9SStefano Zampini 6536651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6537651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 65381690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6539651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6540651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6541651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6542651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6543651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6544651b1cf9SStefano Zampini } 6545651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6546651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6547651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6548651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6549651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6550651b1cf9SStefano Zampini } 6551651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6552651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6553651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6554651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6555651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6556651b1cf9SStefano Zampini } 6557651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6558651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6559651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6560651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6561651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6562651b1cf9SStefano Zampini } 6563651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6564651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6565651b1cf9SStefano Zampini } 6566651b1cf9SStefano Zampini 6567651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6568651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6569651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6570651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6571394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6572394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6573394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6574394ed5ebSJunchao Zhang 6575651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 65769566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6577651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 65789566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6579394ed5ebSJunchao Zhang 6580394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6581394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6582394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6583394ed5ebSJunchao Zhang 65849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 65859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 65869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 65879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6588394ed5ebSJunchao Zhang 6589394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6590158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6591158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6592158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6593158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6594394ed5ebSJunchao Zhang 65959566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 65969566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6597158ec288SJunchao Zhang 6598158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6599158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6600158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6601158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6602158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6603158ec288SJunchao Zhang 6604158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6605158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6606158ec288SJunchao Zhang 6607158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6608158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6609158ec288SJunchao Zhang 6610158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6611158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6612158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6613158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66149566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66159566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6616e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66179566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6618394ed5ebSJunchao Zhang 6619158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6620158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6621158ec288SJunchao Zhang 6622394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6623394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6624394ed5ebSJunchao Zhang PetscInt *Aj_new; 66259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66269566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66279566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6628394ed5ebSJunchao Zhang Aj = Aj_new; 6629394ed5ebSJunchao Zhang } 6630394ed5ebSJunchao Zhang 6631394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6632394ed5ebSJunchao Zhang PetscInt *Bj_new; 66339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66349566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66359566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6636394ed5ebSJunchao Zhang Bj = Bj_new; 6637394ed5ebSJunchao Zhang } 6638394ed5ebSJunchao Zhang 6639cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6640394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6641cbc6b225SStefano Zampini MatType rtype; 6642394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6643cf8ba265SJunchao Zhang PetscObjectState state; 66449566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66459566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6646394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66479371c9d4SSatish Balay if (cstart) { 66489371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 66499371c9d4SSatish Balay } 6650c508b908SBarry Smith 66519566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6652c508b908SBarry Smith 6653c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6654c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 66559566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 66560da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6657c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6658c508b908SBarry Smith 6659c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6660c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 66619566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 66620da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6663c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6664c508b908SBarry Smith 66659566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 66665bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6667cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6668462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6669cbc6b225SStefano Zampini 6670394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6671394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 66729f0612e4SBarry Smith a->free_a = PETSC_TRUE; 66739f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 66749f0612e4SBarry Smith b->free_a = PETSC_TRUE; 66759f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 667617b874c6SStefano Zampini a->maxnz = a->nz; 667717b874c6SStefano Zampini b->maxnz = b->nz; 6678394ed5ebSJunchao Zhang 6679cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 66809566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 66819566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 66829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 66839566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6684cbc6b225SStefano Zampini 66852c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 66862c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 66872c4ab24aSJunchao Zhang coo->n = coo_n; 66882c4ab24aSJunchao Zhang coo->sf = sf2; 66892c4ab24aSJunchao Zhang coo->sendlen = nleaves; 66902c4ab24aSJunchao Zhang coo->recvlen = nroots; 66912c4ab24aSJunchao Zhang coo->Annz = Annz; 66922c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 66932c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 66942c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 66952c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 66962c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 66972c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 66982c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 66992c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67002c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67012c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67022c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67032c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67042c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67052c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67062c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67072c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67082c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67092c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67102c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67112c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67122c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67132c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 671449abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67152c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67162c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6718394ed5ebSJunchao Zhang } 6719394ed5ebSJunchao Zhang 6720d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6721d71ae5a4SJacob Faibussowitsch { 6722394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6723394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6724394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67252c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67262c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67272c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67282c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67292c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67302c4ab24aSJunchao Zhang PetscContainer container; 67312c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6732394ed5ebSJunchao Zhang 6733394ed5ebSJunchao Zhang PetscFunctionBegin; 67342c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67352c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67362c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67372c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67382c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67392c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67402c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67412c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67422c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67432c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67442c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67452c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67462c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67472c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67482c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67492c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67502c4ab24aSJunchao Zhang 67519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 67529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6753394ed5ebSJunchao Zhang 6754394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 67552c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6756394ed5ebSJunchao Zhang 6757394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 67582c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6759394ed5ebSJunchao Zhang /* Add local entries to A and B */ 67602c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6761da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6762158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6763158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6764394ed5ebSJunchao Zhang } 67652c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6766158ec288SJunchao Zhang PetscScalar sum = 0.0; 6767158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6768158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6769394ed5ebSJunchao Zhang } 67702c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6771394ed5ebSJunchao Zhang 6772394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 67732c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6774394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6775394ed5ebSJunchao Zhang } 67762c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6777394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6778394ed5ebSJunchao Zhang } 67799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 67809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 67813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6782394ed5ebSJunchao Zhang } 6783394ed5ebSJunchao Zhang 6784ccd8e176SBarry Smith /*MC 6785ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6786ccd8e176SBarry Smith 6787ccd8e176SBarry Smith Options Database Keys: 678811a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6789ccd8e176SBarry Smith 6790ccd8e176SBarry Smith Level: beginner 67910cd7f59aSBarry Smith 67920cd7f59aSBarry Smith Notes: 67932ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 67940cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 67950cd7f59aSBarry Smith in the matrix 67960cd7f59aSBarry Smith 679711a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 679811a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6799ccd8e176SBarry Smith 68001cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6801ccd8e176SBarry Smith M*/ 6802d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6803d71ae5a4SJacob Faibussowitsch { 6804ccd8e176SBarry Smith Mat_MPIAIJ *b; 6805ccd8e176SBarry Smith PetscMPIInt size; 6806ccd8e176SBarry Smith 6807ccd8e176SBarry Smith PetscFunctionBegin; 68089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68092205254eSKarl Rupp 68104dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6811ccd8e176SBarry Smith B->data = (void *)b; 6812aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6813ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6814ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6815ccd8e176SBarry Smith b->size = size; 68162205254eSKarl Rupp 68179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6818ccd8e176SBarry Smith 6819ccd8e176SBarry Smith /* build cache for off array entries formed */ 68209566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68212205254eSKarl Rupp 6822ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6823f4259b30SLisandro Dalcin b->colmap = NULL; 6824f4259b30SLisandro Dalcin b->garray = NULL; 6825ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6826ccd8e176SBarry Smith 6827ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68280298fd71SBarry Smith b->lvec = NULL; 68290298fd71SBarry Smith b->Mvctx = NULL; 6830ccd8e176SBarry Smith 6831ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6832f4259b30SLisandro Dalcin b->rowindices = NULL; 6833f4259b30SLisandro Dalcin b->rowvalues = NULL; 6834ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6835ccd8e176SBarry Smith 6836f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68370298fd71SBarry Smith b->spptr = NULL; 6838f60c3dc2SHong Zhang 68399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 6845674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ)); 68469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68503d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 68523d0639e7SStefano Zampini #endif 6853d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6854d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6855d5e393b6SSuyash Tandon #endif 68563d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 68579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 68583d0639e7SStefano Zampini #endif 68599779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 68609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6861191b95cbSRichard Tran Mills #endif 68629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 68639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 68649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 68659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 68665d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 68685d7652ecSHong Zhang #endif 6869d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 68709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6871d24d4204SJose E. Roman #endif 68729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 68739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 68743dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 68759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 68769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 68773dad0653Sstefano_zampini #endif 68789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 68799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 68809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 68819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 68829566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 68833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6884ccd8e176SBarry Smith } 688581824310SBarry Smith 68865d83a8b1SBarry Smith /*@ 688711a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 688803bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 688903bfb495SBarry Smith 6890d083f849SBarry Smith Collective 689103bfb495SBarry Smith 689203bfb495SBarry Smith Input Parameters: 689303bfb495SBarry Smith + comm - MPI communicator 689411a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 689503bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6896d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 68972ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 68982ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 68992ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6900483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 690104ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 690203bfb495SBarry Smith . a - matrix values 6903483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69042ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 690503bfb495SBarry Smith - oa - matrix values 690603bfb495SBarry Smith 690703bfb495SBarry Smith Output Parameter: 690803bfb495SBarry Smith . mat - the matrix 690903bfb495SBarry Smith 691003bfb495SBarry Smith Level: advanced 691103bfb495SBarry Smith 691203bfb495SBarry Smith Notes: 6913f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6914292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 691503bfb495SBarry Smith 69162ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 691703bfb495SBarry Smith 69182ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 691903bfb495SBarry Smith 69207b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69217b55108eSBarry Smith 6922dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6923dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6924dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6925dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 692611a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6927dca341c0SJed Brown communication if it is known that only local entries will be set. 692803bfb495SBarry Smith 69291cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6930db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69312b26979fSBarry Smith @*/ 6932d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6933d71ae5a4SJacob Faibussowitsch { 693403bfb495SBarry Smith Mat_MPIAIJ *maij; 693503bfb495SBarry Smith 693603bfb495SBarry Smith PetscFunctionBegin; 693708401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6938aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6939aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69409566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69429566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 694303bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69442205254eSKarl Rupp 69458d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 694603bfb495SBarry Smith 69479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69489566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 694903bfb495SBarry Smith 69509566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69519566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 695203bfb495SBarry Smith 69539566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 69549566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 69559566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 69569566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 69579566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 69583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 695903bfb495SBarry Smith } 696003bfb495SBarry Smith 69614e84afc0SStefano Zampini typedef struct { 69624e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 69634e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 69644e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 69654e84afc0SStefano Zampini 69664e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 69674e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 69684e84afc0SStefano Zampini PetscScalar *bufa; 69694e84afc0SStefano Zampini Mat P_oth; 69704e84afc0SStefano Zampini 69714e84afc0SStefano Zampini /* may take advantage of merging product->B */ 6972ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 69734e84afc0SStefano Zampini 6974ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 69754e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 69764e84afc0SStefano Zampini of the temporary storage */ 69774e84afc0SStefano Zampini PetscBool reusesym; 69784e84afc0SStefano Zampini 69794e84afc0SStefano Zampini /* support for COO values insertion */ 6980ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 6981ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 6982ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 6983ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 6984c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 6985c215019aSStefano Zampini PetscMemType mtype; 69864e84afc0SStefano Zampini 69874e84afc0SStefano Zampini /* customization */ 69884e84afc0SStefano Zampini PetscBool abmerge; 6989abb89eb1SStefano Zampini PetscBool P_oth_bind; 69904e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 69914e84afc0SStefano Zampini 6992ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 6993d71ae5a4SJacob Faibussowitsch { 69944e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 69954e84afc0SStefano Zampini PetscInt i; 69964e84afc0SStefano Zampini 69974e84afc0SStefano Zampini PetscFunctionBegin; 69989566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 69999566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70009566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70019566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70029566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70039566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70049566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 700548a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70069566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70079566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70089566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70099566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70109566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70119566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70134e84afc0SStefano Zampini } 70144e84afc0SStefano Zampini 7015fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7016fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7017fff043a9SJunchao Zhang */ 7018d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7019d71ae5a4SJacob Faibussowitsch { 7020c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7021c215019aSStefano Zampini 7022c215019aSStefano Zampini PetscFunctionBegin; 70239566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7024c215019aSStefano Zampini if (f) { 70259566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7026c215019aSStefano Zampini } else { 7027c215019aSStefano Zampini const PetscScalar *vv; 7028c215019aSStefano Zampini 70299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7030c215019aSStefano Zampini if (n && idx) { 7031c215019aSStefano Zampini PetscScalar *w = v; 7032c215019aSStefano Zampini const PetscInt *oi = idx; 7033c215019aSStefano Zampini PetscInt j; 7034c215019aSStefano Zampini 7035c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7036c215019aSStefano Zampini } else { 70379566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7038c215019aSStefano Zampini } 70399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7040c215019aSStefano Zampini } 70413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7042c215019aSStefano Zampini } 7043c215019aSStefano Zampini 7044d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7045d71ae5a4SJacob Faibussowitsch { 70464e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70474e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70484e84afc0SStefano Zampini 70494e84afc0SStefano Zampini PetscFunctionBegin; 70504e84afc0SStefano Zampini MatCheckProduct(C, 1); 705128b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 70524e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 70534e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 705448a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 705548a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 70564e84afc0SStefano Zampini } 70574e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7058abb89eb1SStefano Zampini 7059abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 706008401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 70619566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7062abb89eb1SStefano Zampini } 70634e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 70646497c311SBarry Smith PetscInt noff; 70654e84afc0SStefano Zampini 70666497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 70674e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 70684e84afc0SStefano Zampini if (noff) { 70696497c311SBarry Smith PetscInt nown; 7070c215019aSStefano Zampini 70716497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 70729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 70739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 70744e84afc0SStefano Zampini n_o += noff; 70754e84afc0SStefano Zampini n_d += nown; 70764e84afc0SStefano Zampini } else { 7077c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7078c215019aSStefano Zampini 70799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 70804e84afc0SStefano Zampini n_d += mm->nz; 70814e84afc0SStefano Zampini } 70824e84afc0SStefano Zampini } 7083c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 70849566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70859566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70864e84afc0SStefano Zampini } 70879566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 70883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70894e84afc0SStefano Zampini } 70904e84afc0SStefano Zampini 70914e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 70924e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7093d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7094d71ae5a4SJacob Faibussowitsch { 70954e84afc0SStefano Zampini Mat_Product *product = C->product; 7096ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 70974e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 70984e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70994e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71004e84afc0SStefano Zampini IS glob = NULL; 71014e84afc0SStefano Zampini const char *prefix; 71024e84afc0SStefano Zampini char pprefix[256]; 71034e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 710482a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 710582a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7106ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7107ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7108ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7109ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7110ddea5d60SJunchao Zhang 71114e84afc0SStefano Zampini MatProductType ptype; 7112d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71134e84afc0SStefano Zampini PetscMPIInt size; 71144e84afc0SStefano Zampini 71154e84afc0SStefano Zampini PetscFunctionBegin; 71164e84afc0SStefano Zampini MatCheckProduct(C, 1); 711728b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71184e84afc0SStefano Zampini ptype = product->type; 7119b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7120fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7121fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7122fa046f9fSJunchao Zhang } 71234e84afc0SStefano Zampini switch (ptype) { 71244e84afc0SStefano Zampini case MATPRODUCT_AB: 71254e84afc0SStefano Zampini A = product->A; 71264e84afc0SStefano Zampini P = product->B; 71274e84afc0SStefano Zampini m = A->rmap->n; 71284e84afc0SStefano Zampini n = P->cmap->n; 71294e84afc0SStefano Zampini M = A->rmap->N; 71304e84afc0SStefano Zampini N = P->cmap->N; 7131ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71324e84afc0SStefano Zampini break; 71334e84afc0SStefano Zampini case MATPRODUCT_AtB: 71344e84afc0SStefano Zampini P = product->A; 71354e84afc0SStefano Zampini A = product->B; 71364e84afc0SStefano Zampini m = P->cmap->n; 71374e84afc0SStefano Zampini n = A->cmap->n; 71384e84afc0SStefano Zampini M = P->cmap->N; 71394e84afc0SStefano Zampini N = A->cmap->N; 71404e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71414e84afc0SStefano Zampini break; 71424e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71434e84afc0SStefano Zampini A = product->A; 71444e84afc0SStefano Zampini P = product->B; 71454e84afc0SStefano Zampini m = P->cmap->n; 71464e84afc0SStefano Zampini n = P->cmap->n; 71474e84afc0SStefano Zampini M = P->cmap->N; 71484e84afc0SStefano Zampini N = P->cmap->N; 71494e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71504e84afc0SStefano Zampini break; 7151d71ae5a4SJacob Faibussowitsch default: 7152d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71534e84afc0SStefano Zampini } 71549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 71554e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 71564e84afc0SStefano Zampini 71574e84afc0SStefano Zampini /* defaults */ 71584e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 71594e84afc0SStefano Zampini mp[i] = NULL; 71604e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 71614e84afc0SStefano Zampini rmapt[i] = -1; 71624e84afc0SStefano Zampini cmapt[i] = -1; 71634e84afc0SStefano Zampini rmapa[i] = NULL; 71644e84afc0SStefano Zampini cmapa[i] = NULL; 71654e84afc0SStefano Zampini } 71664e84afc0SStefano Zampini 71674e84afc0SStefano Zampini /* customization */ 71689566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 71694e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 71704e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 71714e84afc0SStefano Zampini if (product->api_user) { 7172d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 71739566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71749566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7175d0609cedSBarry Smith PetscOptionsEnd(); 71764e84afc0SStefano Zampini } else { 7177d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 71789566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71799566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7180d0609cedSBarry Smith PetscOptionsEnd(); 7181abb89eb1SStefano Zampini } 7182abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7183abb89eb1SStefano Zampini if (product->api_user) { 7184d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 71859566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7186d0609cedSBarry Smith PetscOptionsEnd(); 7187abb89eb1SStefano Zampini } else { 7188d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 71899566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7190d0609cedSBarry Smith PetscOptionsEnd(); 71914e84afc0SStefano Zampini } 71924e84afc0SStefano Zampini } 71934e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 71944e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 71959566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 71969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 71979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 71989566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 71999566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7200ddea5d60SJunchao Zhang 7201ddea5d60SJunchao Zhang cp = 0; 72024e84afc0SStefano Zampini switch (ptype) { 72034e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72049566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72054e84afc0SStefano Zampini 7206ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7207ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72084e84afc0SStefano Zampini /* P is product->B */ 72099566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72109566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72119566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72129566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72139566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72149566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72159566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72164e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72179566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72189566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72199566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72204e84afc0SStefano Zampini rmapt[cp] = 1; 72214e84afc0SStefano Zampini cmapt[cp] = 2; 72224e84afc0SStefano Zampini cmapa[cp] = globidx; 72234e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72244e84afc0SStefano Zampini cp++; 7225ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72269566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72279566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72289566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72299566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72309566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72319566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72324e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72339566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72349566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72354e84afc0SStefano Zampini rmapt[cp] = 1; 72364e84afc0SStefano Zampini cmapt[cp] = 1; 72374e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72384e84afc0SStefano Zampini cp++; 72399566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72409566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72419566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72429566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72439566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72449566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72454e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72469566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72479566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72484e84afc0SStefano Zampini rmapt[cp] = 1; 72494e84afc0SStefano Zampini cmapt[cp] = 2; 72504e84afc0SStefano Zampini cmapa[cp] = p->garray; 72514e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72524e84afc0SStefano Zampini cp++; 72534e84afc0SStefano Zampini } 7254ddea5d60SJunchao Zhang 7255ddea5d60SJunchao Zhang /* A_off * P_other */ 72564e84afc0SStefano Zampini if (mmdata->P_oth) { 72579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 72589566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7259f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 72609566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 72619566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 72629566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72639566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72649566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72659566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72669566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72674e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72689566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72699566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72704e84afc0SStefano Zampini rmapt[cp] = 1; 72714e84afc0SStefano Zampini cmapt[cp] = 2; 72724e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 72734e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72744e84afc0SStefano Zampini cp++; 72754e84afc0SStefano Zampini } 72764e84afc0SStefano Zampini break; 7277ddea5d60SJunchao Zhang 72784e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 72794e84afc0SStefano Zampini /* A is product->B */ 72809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7281ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 72829566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 72839566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 72849566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72859566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72869566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72879566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72884e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72899566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72909566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72919566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72924e84afc0SStefano Zampini rmapt[cp] = 2; 72934e84afc0SStefano Zampini rmapa[cp] = globidx; 72944e84afc0SStefano Zampini cmapt[cp] = 2; 72954e84afc0SStefano Zampini cmapa[cp] = globidx; 72964e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72974e84afc0SStefano Zampini cp++; 72984e84afc0SStefano Zampini } else { 72999566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73009566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73019566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73029566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73039566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73049566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73054e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73069566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73079566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73089566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73094e84afc0SStefano Zampini rmapt[cp] = 1; 73104e84afc0SStefano Zampini cmapt[cp] = 2; 73114e84afc0SStefano Zampini cmapa[cp] = globidx; 73124e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73134e84afc0SStefano Zampini cp++; 73149566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73159566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73169566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73179566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73189566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73199566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73204e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73219566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73229566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73234e84afc0SStefano Zampini rmapt[cp] = 2; 73244e84afc0SStefano Zampini rmapa[cp] = p->garray; 73254e84afc0SStefano Zampini cmapt[cp] = 2; 73264e84afc0SStefano Zampini cmapa[cp] = globidx; 73274e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73284e84afc0SStefano Zampini cp++; 73294e84afc0SStefano Zampini } 73304e84afc0SStefano Zampini break; 73314e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73329566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73334e84afc0SStefano Zampini /* P is product->B */ 73349566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73359566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73369566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73379566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73389566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73399566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73409566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73414e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73429566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73439566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73449566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73454e84afc0SStefano Zampini rmapt[cp] = 2; 73464e84afc0SStefano Zampini rmapa[cp] = globidx; 73474e84afc0SStefano Zampini cmapt[cp] = 2; 73484e84afc0SStefano Zampini cmapa[cp] = globidx; 73494e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73504e84afc0SStefano Zampini cp++; 73514e84afc0SStefano Zampini if (mmdata->P_oth) { 73529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73539566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7354f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73559566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73569566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73579566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73589566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73599566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73609566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73619566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73624e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73639566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73649566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73654e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 73664e84afc0SStefano Zampini cp++; 73679566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 73689566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73699566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73709566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73719566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73729566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73734e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73749566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73759566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73764e84afc0SStefano Zampini rmapt[cp] = 2; 73774e84afc0SStefano Zampini rmapa[cp] = globidx; 73784e84afc0SStefano Zampini cmapt[cp] = 2; 73794e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73804e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73814e84afc0SStefano Zampini cp++; 73824e84afc0SStefano Zampini } 73834e84afc0SStefano Zampini break; 7384d71ae5a4SJacob Faibussowitsch default: 7385d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 73864e84afc0SStefano Zampini } 73874e84afc0SStefano Zampini /* sanity check */ 73889371c9d4SSatish Balay if (size > 1) 73899371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 73904e84afc0SStefano Zampini 73919566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7392ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7393ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7394ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7395ddea5d60SJunchao Zhang } 73964e84afc0SStefano Zampini mmdata->cp = cp; 73974e84afc0SStefano Zampini C->product->data = mmdata; 73984e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 73994e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74004e84afc0SStefano Zampini 7401c215019aSStefano Zampini /* memory type */ 7402c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74039566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7404d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74059566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7406c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7407d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74083214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7409c215019aSStefano Zampini 74104e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7411ddea5d60SJunchao Zhang 7412ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7413ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7414ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7415ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7416ddea5d60SJunchao Zhang */ 74174e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74184e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74194e84afc0SStefano Zampini if (mptmp[cp]) continue; 7420ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74214e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74224e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74234e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74244e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74254e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74264e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74274e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74284e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7429ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7430ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74314e84afc0SStefano Zampini } 74324e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74334e84afc0SStefano Zampini } 7434ddea5d60SJunchao Zhang 7435ddea5d60SJunchao Zhang /* 7436ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7437ddea5d60SJunchao Zhang 7438ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7439ddea5d60SJunchao Zhang 7440d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7441ddea5d60SJunchao Zhang 7442ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7443ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7444ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7445ddea5d60SJunchao Zhang 7446ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7447da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7448ddea5d60SJunchao Zhang */ 74499566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74509566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7451ddea5d60SJunchao Zhang 7452ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7453ddea5d60SJunchao Zhang if (hasoffproc) { 74544e84afc0SStefano Zampini PetscSF msf; 74554e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 74564e84afc0SStefano Zampini 74579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 74589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 74599566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7460ddea5d60SJunchao Zhang 74614e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 74624e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74634e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 74644e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7465ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 74664e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74674e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 74684e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74694e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 74704e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 74714e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74724e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74734e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74744e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 74754e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74764e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 74774e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74784e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7479ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 74804e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 74814e84afc0SStefano Zampini *coi++ = gr; 74824e84afc0SStefano Zampini *idxoff++ = j; 74834e84afc0SStefano Zampini } 74844e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 74854e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 74864e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 74874e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 74884e84afc0SStefano Zampini } else { /* offdiag */ 74894e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 74904e84afc0SStefano Zampini } 74914e84afc0SStefano Zampini ncoo_o += nz; 7492ddea5d60SJunchao Zhang } else { /* this is a local row */ 74934e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 74944e84afc0SStefano Zampini } 74954e84afc0SStefano Zampini } 74964e84afc0SStefano Zampini } 74974e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 74984e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 74994e84afc0SStefano Zampini } 75004e84afc0SStefano Zampini 75019566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75026497c311SBarry Smith PetscInt incoo_o; 75036497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 75046497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75059566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75069566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75074e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75089566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75099566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75109566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75119566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75129566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75139566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7514ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75159566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75164e84afc0SStefano Zampini coo_i = coo_i2; 75174e84afc0SStefano Zampini coo_j = coo_j2; 75184e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75194e84afc0SStefano Zampini ncoo = ncoo_d; 75209566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7521c215019aSStefano Zampini 75229566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75249566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75254e84afc0SStefano Zampini } 7526c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75274e84afc0SStefano Zampini 7528ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75294e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75304e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75314e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75324e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75334e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75344e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75354e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75364e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75374e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75384e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75394e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75404e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75414e84afc0SStefano Zampini 75424e84afc0SStefano Zampini if (mptmp[cp]) continue; 7543ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7544ddea5d60SJunchao Zhang /* fill coo_i */ 75454e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75464e84afc0SStefano Zampini const PetscInt gr = i + rs; 75474e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75484e84afc0SStefano Zampini } 7549ddea5d60SJunchao Zhang /* fill coo_j */ 7550ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75519566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7552ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7553ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7554ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75554e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 75564e84afc0SStefano Zampini } 75574e84afc0SStefano Zampini ncoo_d += mm->nz; 7558ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 75594e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75604e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75614e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75624e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7563ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 75644e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7565ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75664e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75674e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75684e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7569ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75704e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75714e84afc0SStefano Zampini } 75724e84afc0SStefano Zampini ncoo_d += nz; 75734e84afc0SStefano Zampini } 75744e84afc0SStefano Zampini } 75754e84afc0SStefano Zampini } 75764e84afc0SStefano Zampini } 757748a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 75789566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 757948a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 75809566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7581ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 75829566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 75834e84afc0SStefano Zampini 758439cfb508SMark Adams /* set block sizes */ 758539cfb508SMark Adams A = product->A; 758639cfb508SMark Adams P = product->B; 758739cfb508SMark Adams switch (ptype) { 758839cfb508SMark Adams case MATPRODUCT_PtAP: 758958b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs)); 759039cfb508SMark Adams break; 759139cfb508SMark Adams case MATPRODUCT_RARt: 759258b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs)); 759339cfb508SMark Adams break; 759439cfb508SMark Adams case MATPRODUCT_ABC: 759539cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, product->C)); 759639cfb508SMark Adams break; 759739cfb508SMark Adams case MATPRODUCT_AB: 759839cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, P)); 759939cfb508SMark Adams break; 760039cfb508SMark Adams case MATPRODUCT_AtB: 760158b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs)); 760239cfb508SMark Adams break; 760339cfb508SMark Adams case MATPRODUCT_ABt: 760458b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs)); 760539cfb508SMark Adams break; 760639cfb508SMark Adams default: 760739cfb508SMark Adams SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]); 760839cfb508SMark Adams } 760939cfb508SMark Adams 76104e84afc0SStefano Zampini /* preallocate with COO data */ 76119566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76129566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76144e84afc0SStefano Zampini } 76154e84afc0SStefano Zampini 7616d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7617d71ae5a4SJacob Faibussowitsch { 76184e84afc0SStefano Zampini Mat_Product *product = mat->product; 76194e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76204e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7621abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76224e84afc0SStefano Zampini #else 76234e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76244e84afc0SStefano Zampini #endif 76254e84afc0SStefano Zampini 76264e84afc0SStefano Zampini PetscFunctionBegin; 76274e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76284e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 762948a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 763065e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7631abb89eb1SStefano Zampini switch (product->type) { 7632abb89eb1SStefano Zampini case MATPRODUCT_AB: 7633abb89eb1SStefano Zampini if (product->api_user) { 7634d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76359566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7636d0609cedSBarry Smith PetscOptionsEnd(); 7637abb89eb1SStefano Zampini } else { 7638d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76399566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7640d0609cedSBarry Smith PetscOptionsEnd(); 7641abb89eb1SStefano Zampini } 7642abb89eb1SStefano Zampini break; 7643abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7644abb89eb1SStefano Zampini if (product->api_user) { 7645d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76469566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7647d0609cedSBarry Smith PetscOptionsEnd(); 7648abb89eb1SStefano Zampini } else { 7649d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76509566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7651d0609cedSBarry Smith PetscOptionsEnd(); 7652abb89eb1SStefano Zampini } 7653abb89eb1SStefano Zampini break; 7654abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7655abb89eb1SStefano Zampini if (product->api_user) { 7656d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76579566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7658d0609cedSBarry Smith PetscOptionsEnd(); 7659abb89eb1SStefano Zampini } else { 7660d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76619566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7662d0609cedSBarry Smith PetscOptionsEnd(); 7663abb89eb1SStefano Zampini } 7664abb89eb1SStefano Zampini break; 7665d71ae5a4SJacob Faibussowitsch default: 7666d71ae5a4SJacob Faibussowitsch break; 7667abb89eb1SStefano Zampini } 7668abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7669abb89eb1SStefano Zampini } 76704e84afc0SStefano Zampini #endif 76714e84afc0SStefano Zampini if (match) { 76724e84afc0SStefano Zampini switch (product->type) { 76734e84afc0SStefano Zampini case MATPRODUCT_AB: 76744e84afc0SStefano Zampini case MATPRODUCT_AtB: 7675d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7676d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7677d71ae5a4SJacob Faibussowitsch break; 7678d71ae5a4SJacob Faibussowitsch default: 7679d71ae5a4SJacob Faibussowitsch break; 76804e84afc0SStefano Zampini } 76814e84afc0SStefano Zampini } 76824e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 76839566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 76843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 768581824310SBarry Smith } 768698921bdaSJacob Faibussowitsch 768798921bdaSJacob Faibussowitsch /* 768872833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 768972833a62Smarkadams4 769072833a62Smarkadams4 n - the number of block indices in cc[] 769172833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 769272833a62Smarkadams4 */ 7693d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7694d71ae5a4SJacob Faibussowitsch { 769572833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 769672833a62Smarkadams4 const PetscInt *idx; 769772833a62Smarkadams4 769872833a62Smarkadams4 PetscFunctionBegin; 769972833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 770072833a62Smarkadams4 if (nidx) { 770172833a62Smarkadams4 cnt = 0; 770272833a62Smarkadams4 cc[cnt] = idx[0] / bs; 770372833a62Smarkadams4 for (j = 1; j < nidx; j++) { 770472833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 770572833a62Smarkadams4 } 770672833a62Smarkadams4 } 770772833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 770872833a62Smarkadams4 *n = cnt + 1; 77093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771072833a62Smarkadams4 } 771172833a62Smarkadams4 771272833a62Smarkadams4 /* 771372833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 771472833a62Smarkadams4 771572833a62Smarkadams4 ncollapsed - the number of block indices 771672833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 771772833a62Smarkadams4 */ 7718d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7719d71ae5a4SJacob Faibussowitsch { 772072833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 772172833a62Smarkadams4 772272833a62Smarkadams4 PetscFunctionBegin; 772372833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 772472833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 772572833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 772672833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77279371c9d4SSatish Balay cprevtmp = cprev; 77289371c9d4SSatish Balay cprev = merged; 77299371c9d4SSatish Balay merged = cprevtmp; 773072833a62Smarkadams4 } 773172833a62Smarkadams4 *ncollapsed = nprev; 773272833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 773472833a62Smarkadams4 } 773572833a62Smarkadams4 77362d776b49SBarry Smith /* 773772833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 773872833a62Smarkadams4 773972833a62Smarkadams4 Input Parameter: 774072833a62Smarkadams4 . Amat - matrix 774172833a62Smarkadams4 - symmetrize - make the result symmetric 774272833a62Smarkadams4 + scale - scale with diagonal 774372833a62Smarkadams4 774472833a62Smarkadams4 Output Parameter: 774572833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 774672833a62Smarkadams4 774772833a62Smarkadams4 */ 7748e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7749d71ae5a4SJacob Faibussowitsch { 775072833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 775172833a62Smarkadams4 MPI_Comm comm; 775272833a62Smarkadams4 Mat Gmat; 775372833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 775472833a62Smarkadams4 Mat a, b, c; 775572833a62Smarkadams4 MatType jtype; 775672833a62Smarkadams4 775772833a62Smarkadams4 PetscFunctionBegin; 775872833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 775972833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 776072833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 776172833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 776272833a62Smarkadams4 nloc = (Iend - Istart) / bs; 776372833a62Smarkadams4 776472833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 776572833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 776672833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 776772833a62Smarkadams4 776872833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 776972833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 777072833a62Smarkadams4 implementation */ 777172833a62Smarkadams4 if (bs > 1) { 777272833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 777372833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 777472833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 777572833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 777672833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 777772833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 777872833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77792cf69117Smarkadams4 MatScalar *aa, val, *AA; 77802cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 77816497c311SBarry Smith 77829371c9d4SSatish Balay if (isseqaij) { 77839371c9d4SSatish Balay a = Amat; 77849371c9d4SSatish Balay b = NULL; 77859371c9d4SSatish Balay } else { 778672833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 77879371c9d4SSatish Balay a = d->A; 77889371c9d4SSatish Balay b = d->B; 778972833a62Smarkadams4 } 779072833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 779132603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 779272833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 77932cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 779459ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 77956497c311SBarry Smith 779659ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 779759ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 779859ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 779959ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 780072833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 780159ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 780259ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 780359ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 780459ee9f9fSPierre Jolivet else { 780559ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 780659ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 780759ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 780872833a62Smarkadams4 } 780959ee9f9fSPierre Jolivet } 781059ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 781159ee9f9fSPierre Jolivet } 781259ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 781372833a62Smarkadams4 if (!ok) { 781472833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 781559ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 781672833a62Smarkadams4 goto old_bs; 781772833a62Smarkadams4 } 781872833a62Smarkadams4 } 781972833a62Smarkadams4 } 782072833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 782172833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 782272833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78232cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 782472833a62Smarkadams4 // diag 782572833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 782672833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 78276497c311SBarry Smith 782872833a62Smarkadams4 ai = aseq->i; 782972833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 783072833a62Smarkadams4 aj = aseq->j + ai[brow]; 78316497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 783272833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 783372833a62Smarkadams4 val = 0; 7834e02fb3cdSMark Adams if (index_size == 0) { 78356497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 783672833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 78376497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 783872833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 783972833a62Smarkadams4 } 784072833a62Smarkadams4 } 7841e02fb3cdSMark Adams } else { // use (index,index) value if provided 78426497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78436497c311SBarry Smith PetscInt ii = index[iii]; 7844e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 78456497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 78466497c311SBarry Smith PetscInt jj = index[jjj]; 7847cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7848e02fb3cdSMark Adams } 7849e02fb3cdSMark Adams } 7850e02fb3cdSMark Adams } 7851835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 785272833a62Smarkadams4 AA[k / bs] = val; 785372833a62Smarkadams4 } 785472833a62Smarkadams4 grow = Istart / bs + brow / bs; 785566521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 785672833a62Smarkadams4 } 785772833a62Smarkadams4 // off-diag 785872833a62Smarkadams4 if (ismpiaij) { 785972833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 786072833a62Smarkadams4 const PetscScalar *vals; 786172833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 78626497c311SBarry Smith 786372833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 786472833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 786572833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 78666497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 786759ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 786872833a62Smarkadams4 AA[k / bs] = 0; 786972833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 787072833a62Smarkadams4 } 787172833a62Smarkadams4 nc = ncols / bs; 787272833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7873e02fb3cdSMark Adams if (index_size == 0) { 78746497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 787572833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 78766497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 78776497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 7878835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 787972833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 788072833a62Smarkadams4 } 788172833a62Smarkadams4 } 788272833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 788372833a62Smarkadams4 } 7884e02fb3cdSMark Adams } else { // use (index,index) value if provided 78856497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78866497c311SBarry Smith PetscInt ii = index[iii]; 7887e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 78886497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 78896497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 78906497c311SBarry Smith PetscInt jj = index[jjj]; 7891e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7892e02fb3cdSMark Adams } 7893e02fb3cdSMark Adams } 7894e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7895e02fb3cdSMark Adams } 7896e02fb3cdSMark Adams } 789772833a62Smarkadams4 grow = Istart / bs + brow / bs; 789866521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 789972833a62Smarkadams4 } 790072833a62Smarkadams4 } 790172833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 790272833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79032cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 790472833a62Smarkadams4 } else { 790572833a62Smarkadams4 const PetscScalar *vals; 790672833a62Smarkadams4 const PetscInt *idx; 790772833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 790872833a62Smarkadams4 old_bs: 790972833a62Smarkadams4 /* 791072833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 791172833a62Smarkadams4 */ 791272833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 791332603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 791472833a62Smarkadams4 if (isseqaij) { 791572833a62Smarkadams4 PetscInt max_d_nnz; 79166497c311SBarry Smith 791772833a62Smarkadams4 /* 791872833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 791972833a62Smarkadams4 */ 792072833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 792172833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 792272833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 792348a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 792472833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 792572833a62Smarkadams4 } else if (ismpiaij) { 792672833a62Smarkadams4 Mat Daij, Oaij; 792772833a62Smarkadams4 const PetscInt *garray; 792872833a62Smarkadams4 PetscInt max_d_nnz; 79296497c311SBarry Smith 793072833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 793172833a62Smarkadams4 /* 793272833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 793372833a62Smarkadams4 */ 793472833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 793572833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 793672833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 793748a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 793872833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 793972833a62Smarkadams4 /* 794072833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 794172833a62Smarkadams4 */ 794272833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 794372833a62Smarkadams4 o_nnz[jj] = 0; 794472833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 794572833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 794672833a62Smarkadams4 o_nnz[jj] += ncols; 794772833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 794872833a62Smarkadams4 } 794972833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 795072833a62Smarkadams4 } 795172833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 795272833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 795372833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 795472833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 795572833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 795672833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 795772833a62Smarkadams4 PetscInt dest_row = Ii / bs; 79586497c311SBarry Smith 795972833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 796072833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 796172833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 796272833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 79636497c311SBarry Smith 796472833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 796572833a62Smarkadams4 } 796672833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 796772833a62Smarkadams4 } 796872833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 796972833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 797072833a62Smarkadams4 } 797172833a62Smarkadams4 } else { 79722d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79732d776b49SBarry Smith else { 79742d776b49SBarry Smith Gmat = Amat; 79752d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79762d776b49SBarry Smith } 79779371c9d4SSatish Balay if (isseqaij) { 79789371c9d4SSatish Balay a = Gmat; 79799371c9d4SSatish Balay b = NULL; 79809371c9d4SSatish Balay } else { 798172833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79829371c9d4SSatish Balay a = d->A; 79839371c9d4SSatish Balay b = d->B; 798472833a62Smarkadams4 } 79852d776b49SBarry Smith if (filter >= 0 || scale) { 79862d776b49SBarry Smith /* take absolute value of each entry */ 798772833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 798872833a62Smarkadams4 MatInfo info; 798972833a62Smarkadams4 PetscScalar *avals; 79906497c311SBarry Smith 799172833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 799272833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 799372833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 799472833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 799572833a62Smarkadams4 } 799672833a62Smarkadams4 } 79972d776b49SBarry Smith } 799872833a62Smarkadams4 if (symmetrize) { 7999b94d7dedSBarry Smith PetscBool isset, issym; 80006497c311SBarry Smith 8001b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8002b94d7dedSBarry Smith if (!isset || !issym) { 800372833a62Smarkadams4 Mat matTrans; 80046497c311SBarry Smith 800572833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80061fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 800772833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 800872833a62Smarkadams4 } 800972833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80102d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 801172833a62Smarkadams4 if (scale) { 801272833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 801372833a62Smarkadams4 Vec diag; 80146497c311SBarry Smith 801572833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 801672833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 801772833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 801872833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 801972833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 802072833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 802172833a62Smarkadams4 } 802272833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80232d776b49SBarry Smith if (filter >= 0) { 80242ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80252ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80262d776b49SBarry Smith } 802772833a62Smarkadams4 *a_Gmat = Gmat; 80283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 802972833a62Smarkadams4 } 803072833a62Smarkadams4 803103db1824SAlex Lindsay PETSC_INTERN PetscErrorCode MatGetCurrentMemType_MPIAIJ(Mat A, PetscMemType *memtype) 803203db1824SAlex Lindsay { 803303db1824SAlex Lindsay Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)A->data; 803403db1824SAlex Lindsay PetscMemType mD = PETSC_MEMTYPE_HOST, mO = PETSC_MEMTYPE_HOST; 803503db1824SAlex Lindsay 803603db1824SAlex Lindsay PetscFunctionBegin; 803703db1824SAlex Lindsay if (mpiaij->A) PetscCall(MatGetCurrentMemType(mpiaij->A, &mD)); 803803db1824SAlex Lindsay if (mpiaij->B) PetscCall(MatGetCurrentMemType(mpiaij->B, &mO)); 803903db1824SAlex Lindsay *memtype = (mD == mO) ? mD : PETSC_MEMTYPE_HOST; 804003db1824SAlex Lindsay PetscFunctionReturn(PETSC_SUCCESS); 804103db1824SAlex Lindsay } 804203db1824SAlex Lindsay 804372833a62Smarkadams4 /* 804498921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 804598921bdaSJacob Faibussowitsch */ 804698921bdaSJacob Faibussowitsch 804798921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80489566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80499566063dSJacob Faibussowitsch #undef PetscCall 80509371c9d4SSatish Balay #define PetscCall(...) \ 80519371c9d4SSatish Balay do { \ 80525f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 805398921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 805498921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 805598921bdaSJacob Faibussowitsch return; \ 805698921bdaSJacob Faibussowitsch } \ 805798921bdaSJacob Faibussowitsch } while (0) 805898921bdaSJacob Faibussowitsch 805998921bdaSJacob Faibussowitsch #undef SETERRQ 80609371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80619371c9d4SSatish Balay do { \ 806298921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 806398921bdaSJacob Faibussowitsch return; \ 806498921bdaSJacob Faibussowitsch } while (0) 806598921bdaSJacob Faibussowitsch 806698921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 806798921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 806898921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 806998921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 807098921bdaSJacob Faibussowitsch #else 807198921bdaSJacob Faibussowitsch #endif 8072d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8073d71ae5a4SJacob Faibussowitsch { 807498921bdaSJacob Faibussowitsch Mat mat = *mmat; 807598921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 807698921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 807798921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 807898921bdaSJacob Faibussowitsch PetscScalar value; 807998921bdaSJacob Faibussowitsch 808098921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 808198921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80825f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 808398921bdaSJacob Faibussowitsch { 808498921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 808598921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 808698921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 808798921bdaSJacob Faibussowitsch 808898921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 808998921bdaSJacob Faibussowitsch Mat A = aij->A; 809098921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 809198921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 809298921bdaSJacob Faibussowitsch MatScalar *aa; 8093f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 809498921bdaSJacob Faibussowitsch Mat B = aij->B; 809598921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 809698921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 809798921bdaSJacob Faibussowitsch MatScalar *ba; 809898921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 809998921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 810098921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 810198921bdaSJacob Faibussowitsch 810298921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 810398921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 810498921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 810598921bdaSJacob Faibussowitsch 810698921bdaSJacob Faibussowitsch PetscFunctionBegin; 81079566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 810998921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 811098921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81116bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 811298921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 811398921bdaSJacob Faibussowitsch row = im[i] - rstart; 811498921bdaSJacob Faibussowitsch lastcol1 = -1; 811598921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 811698921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 811798921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 811898921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 811998921bdaSJacob Faibussowitsch low1 = 0; 812098921bdaSJacob Faibussowitsch high1 = nrow1; 812198921bdaSJacob Faibussowitsch lastcol2 = -1; 812298921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 812398921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 812498921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 812598921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 812698921bdaSJacob Faibussowitsch low2 = 0; 812798921bdaSJacob Faibussowitsch high2 = nrow2; 812898921bdaSJacob Faibussowitsch 812998921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 813098921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 813198921bdaSJacob Faibussowitsch else value = v[i + j * m]; 813298921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 813398921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 813498921bdaSJacob Faibussowitsch col = in[j] - cstart; 813598921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 813698921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 813798921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 813863a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 813998921bdaSJacob Faibussowitsch } else { 814098921bdaSJacob Faibussowitsch if (mat->was_assembled) { 814148a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 814298921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8143eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 814498921bdaSJacob Faibussowitsch col--; 814598921bdaSJacob Faibussowitsch #else 814698921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 814798921bdaSJacob Faibussowitsch #endif 8148f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 8149eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 815098921bdaSJacob Faibussowitsch col = in[j]; 815198921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 815298921bdaSJacob Faibussowitsch B = aij->B; 815398921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81549371c9d4SSatish Balay bimax = b->imax; 81559371c9d4SSatish Balay bi = b->i; 81569371c9d4SSatish Balay bilen = b->ilen; 81579371c9d4SSatish Balay bj = b->j; 815898921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 815998921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 816098921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 816198921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 816298921bdaSJacob Faibussowitsch low2 = 0; 816398921bdaSJacob Faibussowitsch high2 = nrow2; 816498921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 816598921bdaSJacob Faibussowitsch ba = b->a; 816698921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 816798921bdaSJacob Faibussowitsch } 816898921bdaSJacob Faibussowitsch } else col = in[j]; 816998921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 817098921bdaSJacob Faibussowitsch } 817198921bdaSJacob Faibussowitsch } 817298921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 817398921bdaSJacob Faibussowitsch if (roworiented) { 81749566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 817598921bdaSJacob Faibussowitsch } else { 81769566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 817798921bdaSJacob Faibussowitsch } 817898921bdaSJacob Faibussowitsch } 817998921bdaSJacob Faibussowitsch } 81809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81819566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 818298921bdaSJacob Faibussowitsch } 818398921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 818498921bdaSJacob Faibussowitsch } 818572833a62Smarkadams4 818698921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 818798921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 818898921bdaSJacob Faibussowitsch * original definitions */ 81899566063dSJacob Faibussowitsch #undef PetscCall 819098921bdaSJacob Faibussowitsch #undef SETERRQ 8191