1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 10674b392bSAlexander #define TYPE AIJ 11674b392bSAlexander #define TYPE_AIJ 12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h" 13674b392bSAlexander #undef TYPE 14674b392bSAlexander #undef TYPE_AIJ 15674b392bSAlexander 16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat) 1726cec326SBarry Smith { 1826cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1926cec326SBarry Smith 2026cec326SBarry Smith PetscFunctionBegin; 2126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 2226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 2326cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 2426cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 2526cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2826cec326SBarry Smith #else 2926cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 3026cec326SBarry Smith #endif 3126cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 3226cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 3326cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 3426cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 3526cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 36674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 37674b392bSAlexander } 38674b392bSAlexander 39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat) 40674b392bSAlexander { 41674b392bSAlexander Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 42674b392bSAlexander /* Save the nonzero states of the component matrices because those are what are used to determine 43674b392bSAlexander the nonzero state of mat */ 44674b392bSAlexander PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate; 45674b392bSAlexander 46674b392bSAlexander PetscFunctionBegin; 47674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 48674b392bSAlexander PetscCall(MatSetUp_MPI_Hash(mat)); 49674b392bSAlexander aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate; 50674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 51674b392bSAlexander } 52674b392bSAlexander 53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 54674b392bSAlexander { 55674b392bSAlexander PetscFunctionBegin; 56674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 5726cec326SBarry Smith 5826cec326SBarry Smith PetscCall(PetscFree(mat->data)); 5926cec326SBarry Smith 6026cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 6126cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 6226cec326SBarry Smith 6326cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 69674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 7126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 7326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 7626cec326SBarry Smith #endif 7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 7926cec326SBarry Smith #endif 8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 8126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 8226cec326SBarry Smith #endif 8326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 8526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 8626cec326SBarry Smith #endif 8726cec326SBarry Smith #if defined(PETSC_HAVE_SCALAPACK) 8826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 8926cec326SBarry Smith #endif 9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 9126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 9226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 9326cec326SBarry Smith #endif 9426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 9526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 9626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 9726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 9826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 9926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 10126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 10226cec326SBarry Smith #endif 10326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 10426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 10526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 10626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 10726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 10826cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 10926cec326SBarry Smith } 11026cec326SBarry Smith 111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 112d71ae5a4SJacob Faibussowitsch { 1138a9c020eSBarry Smith Mat B; 1148a9c020eSBarry Smith 1158a9c020eSBarry Smith PetscFunctionBegin; 1168a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 1178a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 1188a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 119501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 1203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1218a9c020eSBarry Smith } 1228a9c020eSBarry Smith 123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 124d71ae5a4SJacob Faibussowitsch { 1258a9c020eSBarry Smith Mat B; 1268a9c020eSBarry Smith 1278a9c020eSBarry Smith PetscFunctionBegin; 1288a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1298a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 130501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1328a9c020eSBarry Smith } 1338a9c020eSBarry Smith 13401bebe75SBarry Smith /*MC 13501bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 13601bebe75SBarry Smith 13711a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 13811a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 13911a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 14001bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14101bebe75SBarry Smith the above preallocation routines for simplicity. 14201bebe75SBarry Smith 14327430b45SBarry Smith Options Database Key: 14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 14501bebe75SBarry Smith 14611a5261eSBarry Smith Developer Note: 1472ef1f0ffSBarry Smith Level: beginner 1482ef1f0ffSBarry Smith 14911a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 15001bebe75SBarry Smith enough exist. 15101bebe75SBarry Smith 1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 15301bebe75SBarry Smith M*/ 15401bebe75SBarry Smith 15501bebe75SBarry Smith /*MC 15601bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 15701bebe75SBarry Smith 15811a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 15911a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 16011a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 16101bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 16201bebe75SBarry Smith the above preallocation routines for simplicity. 16301bebe75SBarry Smith 16427430b45SBarry Smith Options Database Key: 16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 16601bebe75SBarry Smith 16701bebe75SBarry Smith Level: beginner 16801bebe75SBarry Smith 1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 17001bebe75SBarry Smith M*/ 17101bebe75SBarry Smith 172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 173d71ae5a4SJacob Faibussowitsch { 174f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 175f74ef234SStefano Zampini 176f74ef234SStefano Zampini PetscFunctionBegin; 177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 178b470e4b4SRichard Tran Mills A->boundtocpu = flg; 179f74ef234SStefano Zampini #endif 1801baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1811baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1823120d049SRichard Tran Mills 1833120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1843120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1853120d049SRichard Tran Mills * to differ from the parent matrix. */ 1861baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1871baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189f74ef234SStefano Zampini } 190f74ef234SStefano Zampini 191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 192d71ae5a4SJacob Faibussowitsch { 19326bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 19426bda2c4Sstefano_zampini 19526bda2c4Sstefano_zampini PetscFunctionBegin; 19646533700Sstefano_zampini if (mat->A) { 1979566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 19946533700Sstefano_zampini } 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20126bda2c4Sstefano_zampini } 20226bda2c4Sstefano_zampini 203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 204d71ae5a4SJacob Faibussowitsch { 20527d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 20627d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 20727d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 20827d4218bSShri Abhyankar const PetscInt *ia, *ib; 209ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 21027d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 21127d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 21227d4218bSShri Abhyankar 21327d4218bSShri Abhyankar PetscFunctionBegin; 214f4259b30SLisandro Dalcin *keptrows = NULL; 215ce496241SStefano Zampini 21627d4218bSShri Abhyankar ia = a->i; 21727d4218bSShri Abhyankar ib = b->i; 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 22027d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22127d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22227d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22327d4218bSShri Abhyankar if (!na && !nb) { 22427d4218bSShri Abhyankar cnt++; 22527d4218bSShri Abhyankar goto ok1; 22627d4218bSShri Abhyankar } 227ce496241SStefano Zampini aa = aav + ia[i]; 22827d4218bSShri Abhyankar for (j = 0; j < na; j++) { 22927d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 23027d4218bSShri Abhyankar } 2318e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23227d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23327d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar cnt++; 23627d4218bSShri Abhyankar ok1:; 23727d4218bSShri Abhyankar } 238462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 239ce496241SStefano Zampini if (!n0rows) { 2409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243ce496241SStefano Zampini } 2449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 24527d4218bSShri Abhyankar cnt = 0; 24627d4218bSShri Abhyankar for (i = 0; i < m; i++) { 24727d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 24827d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 24927d4218bSShri Abhyankar if (!na && !nb) continue; 250ce496241SStefano Zampini aa = aav + ia[i]; 25127d4218bSShri Abhyankar for (j = 0; j < na; j++) { 25227d4218bSShri Abhyankar if (aa[j] != 0.0) { 25327d4218bSShri Abhyankar rows[cnt++] = rstart + i; 25427d4218bSShri Abhyankar goto ok2; 25527d4218bSShri Abhyankar } 25627d4218bSShri Abhyankar } 2578e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 25827d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 25927d4218bSShri Abhyankar if (bb[j] != 0.0) { 26027d4218bSShri Abhyankar rows[cnt++] = rstart + i; 26127d4218bSShri Abhyankar goto ok2; 26227d4218bSShri Abhyankar } 26327d4218bSShri Abhyankar } 26427d4218bSShri Abhyankar ok2:; 26527d4218bSShri Abhyankar } 2669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27027d4218bSShri Abhyankar } 27127d4218bSShri Abhyankar 272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 273d71ae5a4SJacob Faibussowitsch { 27499e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 27594342113SStefano Zampini PetscBool cong; 27699e65526SBarry Smith 27799e65526SBarry Smith PetscFunctionBegin; 2789566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 27994342113SStefano Zampini if (Y->assembled && cong) { 2809566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 28199e65526SBarry Smith } else { 2829566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 28399e65526SBarry Smith } 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28599e65526SBarry Smith } 28699e65526SBarry Smith 287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 288d71ae5a4SJacob Faibussowitsch { 289f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 290f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 291f1f41ecbSJed Brown 292f1f41ecbSJed Brown PetscFunctionBegin; 2930298fd71SBarry Smith *zrows = NULL; 2949566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2959566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 296f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299f1f41ecbSJed Brown } 300f1f41ecbSJed Brown 301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 302d71ae5a4SJacob Faibussowitsch { 3030716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 304a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 3050716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 3060716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 3070716a85fSBarry Smith PetscReal *work; 308ce496241SStefano Zampini const PetscScalar *dummy; 3090716a85fSBarry Smith 3100716a85fSBarry Smith PetscFunctionBegin; 3119566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 3129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 3139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 3149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 3159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 3169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 319ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 320857cbf51SRichard Tran Mills } else if (type == NORM_1) { 321ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 322ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 323857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 324ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 325ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 326857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 327ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 328ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 329857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 330ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 331ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 332857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 333857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 334e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3350716a85fSBarry Smith } else { 336e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3370716a85fSBarry Smith } 3389566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 339857cbf51SRichard Tran Mills if (type == NORM_2) { 340a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 341857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 342a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3430716a85fSBarry Smith } 3443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3450716a85fSBarry Smith } 3460716a85fSBarry Smith 347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 348d71ae5a4SJacob Faibussowitsch { 349e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 350e52d2c62SBarry Smith IS sis, gis; 351e52d2c62SBarry Smith const PetscInt *isis, *igis; 352e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 353e52d2c62SBarry Smith 354e52d2c62SBarry Smith PetscFunctionBegin; 3559566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3569566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3579566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3589566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 361e52d2c62SBarry Smith 3629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 365e52d2c62SBarry Smith n = ngis + nsis; 3669566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 368e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 370e52d2c62SBarry Smith 3719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376e52d2c62SBarry Smith } 377e52d2c62SBarry Smith 378dd6ea824SBarry Smith /* 3790f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3810f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 38372fa4726SStefano Zampini has an order N integer array but is fast to access. 3849e25ed09SBarry Smith */ 385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 386d71ae5a4SJacob Faibussowitsch { 38744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 388d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 389dbb450caSBarry Smith 3903a40ed3dSBarry Smith PetscFunctionBegin; 39108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 393eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 394c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 395b1fc9764SSatish Balay #else 3969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 397905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 398b1fc9764SSatish Balay #endif 3993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4009e25ed09SBarry Smith } 4019e25ed09SBarry Smith 402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 403a8f51744SPierre Jolivet do { \ 404db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 405db4deed7SKarl Rupp else high1 = nrow1; \ 406fd3458f5SBarry Smith lastcol1 = col; \ 407fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 408fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 409fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 410fd3458f5SBarry Smith else low1 = t; \ 411ba4e3ef2SSatish Balay } \ 412fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 413fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 414fd3458f5SBarry Smith if (rp1[_i] == col) { \ 4150c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4160c0d7e18SFande Kong ap1[_i] += value; \ 4170c0d7e18SFande Kong /* Not sure LogFlops will slow dow the code or not */ \ 4180c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4199371c9d4SSatish Balay } else ap1[_i] = value; \ 42030770e4dSSatish Balay goto a_noinsert; \ 4210520107fSSatish Balay } \ 4220520107fSSatish Balay } \ 4239371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4249371c9d4SSatish Balay low1 = 0; \ 4259371c9d4SSatish Balay high1 = nrow1; \ 4269371c9d4SSatish Balay goto a_noinsert; \ 4279371c9d4SSatish Balay } \ 4289371c9d4SSatish Balay if (nonew == 1) { \ 4299371c9d4SSatish Balay low1 = 0; \ 4309371c9d4SSatish Balay high1 = nrow1; \ 4319371c9d4SSatish Balay goto a_noinsert; \ 4329371c9d4SSatish Balay } \ 43308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 434fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4359371c9d4SSatish Balay N = nrow1++ - 1; \ 4369371c9d4SSatish Balay a->nz++; \ 4379371c9d4SSatish Balay high1++; \ 4380520107fSSatish Balay /* shift up all the later entries in this row */ \ 4399566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4409566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 441fd3458f5SBarry Smith rp1[_i] = col; \ 442fd3458f5SBarry Smith ap1[_i] = value; \ 44330770e4dSSatish Balay a_noinsert:; \ 444fd3458f5SBarry Smith ailen[row] = nrow1; \ 445a8f51744SPierre Jolivet } while (0) 4460a198c4cSBarry Smith 447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 448a8f51744SPierre Jolivet do { \ 449db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 450db4deed7SKarl Rupp else high2 = nrow2; \ 451fd3458f5SBarry Smith lastcol2 = col; \ 452fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 453fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 454fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 455fd3458f5SBarry Smith else low2 = t; \ 456ba4e3ef2SSatish Balay } \ 457fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 458fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 459fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4600c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4610c0d7e18SFande Kong ap2[_i] += value; \ 4620c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4639371c9d4SSatish Balay } else ap2[_i] = value; \ 46430770e4dSSatish Balay goto b_noinsert; \ 46530770e4dSSatish Balay } \ 46630770e4dSSatish Balay } \ 4679371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4689371c9d4SSatish Balay low2 = 0; \ 4699371c9d4SSatish Balay high2 = nrow2; \ 4709371c9d4SSatish Balay goto b_noinsert; \ 4719371c9d4SSatish Balay } \ 4729371c9d4SSatish Balay if (nonew == 1) { \ 4739371c9d4SSatish Balay low2 = 0; \ 4749371c9d4SSatish Balay high2 = nrow2; \ 4759371c9d4SSatish Balay goto b_noinsert; \ 4769371c9d4SSatish Balay } \ 47708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 478fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4799371c9d4SSatish Balay N = nrow2++ - 1; \ 4809371c9d4SSatish Balay b->nz++; \ 4819371c9d4SSatish Balay high2++; \ 48230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4839566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4849566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 485fd3458f5SBarry Smith rp2[_i] = col; \ 486fd3458f5SBarry Smith ap2[_i] = value; \ 48730770e4dSSatish Balay b_noinsert:; \ 488fd3458f5SBarry Smith bilen[row] = nrow2; \ 489a8f51744SPierre Jolivet } while (0) 49030770e4dSSatish Balay 491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 492d71ae5a4SJacob Faibussowitsch { 4932fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4942fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4952fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 496fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith PetscFunctionBegin; 4992fd7e33dSBarry Smith /* code only works for square matrices A */ 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 5029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 5032fd7e33dSBarry Smith row = row - diag; 5042fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 5052fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 5062fd7e33dSBarry Smith } 507fff043a9SJunchao Zhang if (l) { 5089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 5109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 511fff043a9SJunchao Zhang } 5122fd7e33dSBarry Smith 5132fd7e33dSBarry Smith /* diagonal part */ 514fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 5159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 51657508eceSPierre Jolivet PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row])); 5179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 518fff043a9SJunchao Zhang } 5192fd7e33dSBarry Smith 5202fd7e33dSBarry Smith /* right of diagonal part */ 521fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 525fff043a9SJunchao Zhang } 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5272fd7e33dSBarry Smith } 5282fd7e33dSBarry Smith 529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 530d71ae5a4SJacob Faibussowitsch { 53144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 532071fcb05SBarry Smith PetscScalar value = 0.0; 533d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 534d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 535ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5368a729477SBarry Smith 5370520107fSSatish Balay /* Some Variables required in the macro */ 5384ee7247eSSatish Balay Mat A = aij->A; 5394ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 54057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 541ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 54230770e4dSSatish Balay Mat B = aij->B; 54330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 544d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 545ce496241SStefano Zampini MatScalar *aa, *ba; 546fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5478d76821aSHong Zhang PetscInt nonew; 548a77337e4SBarry Smith MatScalar *ap1, *ap2; 5494ee7247eSSatish Balay 5503a40ed3dSBarry Smith PetscFunctionBegin; 5519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5538a729477SBarry Smith for (i = 0; i < m; i++) { 5545ef9f2a5SBarry Smith if (im[i] < 0) continue; 55508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5564b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5574b0e389bSBarry Smith row = im[i] - rstart; 558fd3458f5SBarry Smith lastcol1 = -1; 5598e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5608e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 561fd3458f5SBarry Smith rmax1 = aimax[row]; 562fd3458f5SBarry Smith nrow1 = ailen[row]; 563fd3458f5SBarry Smith low1 = 0; 564fd3458f5SBarry Smith high1 = nrow1; 565fd3458f5SBarry Smith lastcol2 = -1; 5668e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5678e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 568fd3458f5SBarry Smith rmax2 = bimax[row]; 569d498b1e9SBarry Smith nrow2 = bilen[row]; 570fd3458f5SBarry Smith low2 = 0; 571fd3458f5SBarry Smith high2 = nrow2; 572fd3458f5SBarry Smith 5731eb62cbbSBarry Smith for (j = 0; j < n; j++) { 574071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 575c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 576fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 577fd3458f5SBarry Smith col = in[j] - cstart; 5788d76821aSHong Zhang nonew = a->nonew; 579d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 580f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 581f7d195e4SLawrence Mitchell continue; 582f7d195e4SLawrence Mitchell } else { 583f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 584227d817aSBarry Smith if (mat->was_assembled) { 58548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 587eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 588fa46199cSSatish Balay col--; 589b1fc9764SSatish Balay #else 590905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 591b1fc9764SSatish Balay #endif 592f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 593eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); /* Change aij->B from reduced/local format to expanded/global format */ 5944b0e389bSBarry Smith col = in[j]; 5959bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 596f9508a3cSSatish Balay B = aij->B; 597f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5989371c9d4SSatish Balay bimax = b->imax; 5999371c9d4SSatish Balay bi = b->i; 6009371c9d4SSatish Balay bilen = b->ilen; 6019371c9d4SSatish Balay bj = b->j; 6029371c9d4SSatish Balay ba = b->a; 603cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 604cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 605d498b1e9SBarry Smith rmax2 = bimax[row]; 606d498b1e9SBarry Smith nrow2 = bilen[row]; 607d498b1e9SBarry Smith low2 = 0; 608d498b1e9SBarry Smith high2 = nrow2; 609d0f46423SBarry Smith bm = aij->B->rmap->n; 610f9508a3cSSatish Balay ba = b->a; 611d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 612f4f49eeaSPierre Jolivet if (1 == ((Mat_SeqAIJ *)aij->B->data)->nonew) { 6139566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 61498921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 6150587a0fcSBarry Smith } 616c48de900SBarry Smith } else col = in[j]; 6178d76821aSHong Zhang nonew = b->nonew; 618d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6191eb62cbbSBarry Smith } 6201eb62cbbSBarry Smith } 6215ef9f2a5SBarry Smith } else { 62228b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 62390f02eecSBarry Smith if (!aij->donotstash) { 6245080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 625d36fbae8SSatish Balay if (roworiented) { 6268e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 627d36fbae8SSatish Balay } else { 6288e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6294b0e389bSBarry Smith } 6301eb62cbbSBarry Smith } 6318a729477SBarry Smith } 63290f02eecSBarry Smith } 6335519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6368a729477SBarry Smith } 6378a729477SBarry Smith 6382b08fdbeSandi selinger /* 639904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6402b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 641904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6422b08fdbeSandi selinger */ 643d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 644d71ae5a4SJacob Faibussowitsch { 645904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 646904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6474cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 648904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 649904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 650904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 651904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 652904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6536dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 654904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 655904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 656904d1e70Sandi selinger 657904d1e70Sandi selinger PetscFunctionBegin; 658904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 659904d1e70Sandi selinger for (j = 0; j < am; j++) { 660904d1e70Sandi selinger dnz = onz = 0; 661904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6626dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 663904d1e70Sandi selinger /* If column is in the diagonal */ 664904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 665904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 666904d1e70Sandi selinger dnz++; 667904d1e70Sandi selinger } else { /* off-diagonal entries */ 668904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 669904d1e70Sandi selinger onz++; 670904d1e70Sandi selinger } 671904d1e70Sandi selinger } 672904d1e70Sandi selinger ailen[j] = dnz; 673904d1e70Sandi selinger bilen[j] = onz; 674904d1e70Sandi selinger } 6753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 676904d1e70Sandi selinger } 677904d1e70Sandi selinger 678904d1e70Sandi selinger /* 679904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 680904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6811de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6821de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6831de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 684904d1e70Sandi selinger */ 685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 686d71ae5a4SJacob Faibussowitsch { 6873a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6883a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6894cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 690f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6913a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6923a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6933a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6943a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6953a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6966dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6971de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 698904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 699904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 7003a063d27Sandi selinger 7013a063d27Sandi selinger PetscFunctionBegin; 7023a063d27Sandi selinger /* Iterate over all rows of the matrix */ 7033a063d27Sandi selinger for (j = 0; j < am; j++) { 704904d1e70Sandi selinger dnz_row = onz_row = 0; 705904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 706904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 707e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 708e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 709ae8e66a0Sandi selinger /* If column is in the diagonal */ 7103a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 711904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 712904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 713904d1e70Sandi selinger dnz_row++; 714ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 715904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 716904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 717904d1e70Sandi selinger onz_row++; 7183a063d27Sandi selinger } 7193a063d27Sandi selinger } 720904d1e70Sandi selinger ailen[j] = dnz_row; 721904d1e70Sandi selinger bilen[j] = onz_row; 7223a063d27Sandi selinger } 7233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7243a063d27Sandi selinger } 7253a063d27Sandi selinger 726ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 727d71ae5a4SJacob Faibussowitsch { 728b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 729d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 730d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 731b49de8d1SLois Curfman McInnes 7323a40ed3dSBarry Smith PetscFunctionBegin; 733b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 73454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 73554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 73685835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 737b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 738b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 73954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 74054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 741b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 742b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7439566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 744fa852ad4SSatish Balay } else { 74548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 746aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 747eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 748fa46199cSSatish Balay col--; 749b1fc9764SSatish Balay #else 750905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 751b1fc9764SSatish Balay #endif 752e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 75348a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 754b49de8d1SLois Curfman McInnes } 755b49de8d1SLois Curfman McInnes } 756b49de8d1SLois Curfman McInnes } 7573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 758b49de8d1SLois Curfman McInnes } 759bc5ccf88SSatish Balay 760ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 761d71ae5a4SJacob Faibussowitsch { 762bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 763b1d57f15SBarry Smith PetscInt nstash, reallocs; 764bc5ccf88SSatish Balay 765bc5ccf88SSatish Balay PetscFunctionBegin; 7663ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 767bc5ccf88SSatish Balay 7689566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7699566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 7709566063dSJacob Faibussowitsch PetscCall(PetscInfo(aij->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 772bc5ccf88SSatish Balay } 773bc5ccf88SSatish Balay 774d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 775d71ae5a4SJacob Faibussowitsch { 776bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 777b1d57f15SBarry Smith PetscMPIInt n; 778b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 779e44c0bd4SBarry Smith PetscInt *row, *col; 780ace3abfcSBarry Smith PetscBool other_disassembled; 78187828ca2SBarry Smith PetscScalar *val; 782bc5ccf88SSatish Balay 78391c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7846e111a19SKarl Rupp 785bc5ccf88SSatish Balay PetscFunctionBegin; 7864cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 787a2d1c673SSatish Balay while (1) { 7889566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 789a2d1c673SSatish Balay if (!flg) break; 790a2d1c673SSatish Balay 791bc5ccf88SSatish Balay for (i = 0; i < n;) { 792bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7932205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7942205254eSKarl Rupp if (row[j] != rstart) break; 7952205254eSKarl Rupp } 796bc5ccf88SSatish Balay if (j < n) ncols = j - i; 797bc5ccf88SSatish Balay else ncols = n - i; 798bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7999566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 800bc5ccf88SSatish Balay i = j; 801bc5ccf88SSatish Balay } 802bc5ccf88SSatish Balay } 8039566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 804bc5ccf88SSatish Balay } 8058c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 806c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 8079ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 8089ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 8099566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 8109566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 8119ecce9b1SRichard Tran Mills } 812e2cf4d64SStefano Zampini #endif 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 8149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 815bc5ccf88SSatish Balay 816bc5ccf88SSatish Balay /* determine if any processor has disassembled, if so we must 817071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 818bc5ccf88SSatish Balay /* 819bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 820bc5ccf88SSatish Balay no processor disassembled thus we can skip this stuff 821bc5ccf88SSatish Balay */ 822bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 823462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 82435cb6cd3SPierre Jolivet if (mat->was_assembled && !other_disassembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 825eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 826ad59fb31SSatish Balay } 827ad59fb31SSatish Balay } 82848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8299566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8308c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 831c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 832e2cf4d64SStefano Zampini #endif 8339566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8349566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 835bc5ccf88SSatish Balay 8369566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8372205254eSKarl Rupp 838f4259b30SLisandro Dalcin aij->rowvalues = NULL; 839a30b2313SHong Zhang 8409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 841e56f5c9eSBarry Smith 8424f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 843f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 844e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 845462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 846e56f5c9eSBarry Smith } 8478c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 848c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 849e2cf4d64SStefano Zampini #endif 8503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 851bc5ccf88SSatish Balay } 852bc5ccf88SSatish Balay 853ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 854d71ae5a4SJacob Faibussowitsch { 85544a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8563a40ed3dSBarry Smith 8573a40ed3dSBarry Smith PetscFunctionBegin; 8589566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8599566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8611eb62cbbSBarry Smith } 8621eb62cbbSBarry Smith 863ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 864d71ae5a4SJacob Faibussowitsch { 8651b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8661b1dd7adSMatthew G. Knepley PetscInt *lrows; 8676e520ac8SStefano Zampini PetscInt r, len; 8689939a2d1SBarry Smith PetscBool cong; 8691eb62cbbSBarry Smith 8703a40ed3dSBarry Smith PetscFunctionBegin; 8716e520ac8SStefano Zampini /* get locally owned rows */ 8729566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8739566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 874dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 87597b48c8fSBarry Smith if (x && b) { 8761b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8771b1dd7adSMatthew G. Knepley PetscScalar *bb; 8781b1dd7adSMatthew G. Knepley 87928b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8819566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8821b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 88597b48c8fSBarry Smith } 886a92ad425SStefano Zampini 887a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8899566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 890a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 891a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 892a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 893a92ad425SStefano Zampini PetscInt nnwA, nnwB; 894a92ad425SStefano Zampini PetscBool nnzA, nnzB; 895a92ad425SStefano Zampini 896a92ad425SStefano Zampini nnwA = aijA->nonew; 897a92ad425SStefano Zampini nnwB = aijB->nonew; 898a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 899a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 900a92ad425SStefano Zampini if (!nnzA) { 9019566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 902a92ad425SStefano Zampini aijA->nonew = 0; 903a92ad425SStefano Zampini } 904a92ad425SStefano Zampini if (!nnzB) { 9059566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 906a92ad425SStefano Zampini aijB->nonew = 0; 907a92ad425SStefano Zampini } 908a92ad425SStefano Zampini /* Must zero here before the next loop */ 9099566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9109566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9111b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 9121b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 913a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 9149566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 915e2d53e46SBarry Smith } 916a92ad425SStefano Zampini aijA->nonew = nnwA; 917a92ad425SStefano Zampini aijB->nonew = nnwB; 9186eb55b6aSBarry Smith } else { 9199566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9209566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9216eb55b6aSBarry Smith } 9229566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9254f9cfa9eSBarry Smith 9269939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 927f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9289939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 929462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9309939a2d1SBarry Smith } 9313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9321eb62cbbSBarry Smith } 9331eb62cbbSBarry Smith 934ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 935d71ae5a4SJacob Faibussowitsch { 9369c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9376497c311SBarry Smith PetscInt n = A->rmap->n; 938131c27b5Sprj- PetscInt i, j, r, m, len = 0; 93954bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 940131c27b5Sprj- PetscMPIInt p = 0; 94154bd4135SMatthew G. Knepley PetscSFNode *rrows; 94254bd4135SMatthew G. Knepley PetscSF sf; 9439c7c4993SBarry Smith const PetscScalar *xx; 944fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 945564f14d6SBarry Smith Vec xmask, lmask; 946564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 947564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 948564f14d6SBarry Smith PetscScalar *aa; 9499c7c4993SBarry Smith 9509c7c4993SBarry Smith PetscFunctionBegin; 95154bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 95354bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 95554bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 95654bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 957aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9585ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9599566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9605ba17502SJed Brown } 96154bd4135SMatthew G. Knepley rrows[r].rank = p; 96254bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9639c7c4993SBarry Smith } 9649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 96654bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9679566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9689566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 97054bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9719371c9d4SSatish Balay for (r = 0; r < n; ++r) 9729371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 973564f14d6SBarry Smith /* zero diagonal part of matrix */ 9749566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9754cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9769566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9779566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9789566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 97954bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 984a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 985a92ad425SStefano Zampini PetscBool cong; 986a92ad425SStefano Zampini 9879566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 98828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9909566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9929566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 993377aa5a1SBarry Smith } 9949566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9954cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 997564f14d6SBarry Smith ii = aij->i; 9988e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 999564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 1000564f14d6SBarry Smith if (aij->compressedrow.use) { 1001564f14d6SBarry Smith m = aij->compressedrow.nrows; 1002564f14d6SBarry Smith ii = aij->compressedrow.i; 1003564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 1004564f14d6SBarry Smith for (i = 0; i < m; i++) { 1005564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1006564f14d6SBarry Smith aj = aij->j + ii[i]; 1007fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1008564f14d6SBarry Smith 1009564f14d6SBarry Smith for (j = 0; j < n; j++) { 101025266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1011377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 1012564f14d6SBarry Smith *aa = 0.0; 1013564f14d6SBarry Smith } 1014564f14d6SBarry Smith aa++; 1015564f14d6SBarry Smith aj++; 1016564f14d6SBarry Smith } 1017564f14d6SBarry Smith ridx++; 1018564f14d6SBarry Smith } 1019564f14d6SBarry Smith } else { /* do not use compressed row format */ 1020564f14d6SBarry Smith m = l->B->rmap->n; 1021564f14d6SBarry Smith for (i = 0; i < m; i++) { 1022564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1023564f14d6SBarry Smith aj = aij->j + ii[i]; 1024fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1025564f14d6SBarry Smith for (j = 0; j < n; j++) { 102625266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1027377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1028564f14d6SBarry Smith *aa = 0.0; 1029564f14d6SBarry Smith } 1030564f14d6SBarry Smith aa++; 1031564f14d6SBarry Smith aj++; 1032564f14d6SBarry Smith } 1033564f14d6SBarry Smith } 1034564f14d6SBarry Smith } 1035a92ad425SStefano Zampini if (x && b) { 10369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1038377aa5a1SBarry Smith } 10399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10429566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10434f9cfa9eSBarry Smith 10444f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1045f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10464f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1047462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10484f9cfa9eSBarry Smith } 10493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10509c7c4993SBarry Smith } 10519c7c4993SBarry Smith 1052ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1053d71ae5a4SJacob Faibussowitsch { 1054416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1055b1d57f15SBarry Smith PetscInt nt; 105619b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1057416022c9SBarry Smith 10583a40ed3dSBarry Smith PetscFunctionBegin; 10599566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 106008401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1062296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1064296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10661eb62cbbSBarry Smith } 10671eb62cbbSBarry Smith 1068ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1069d71ae5a4SJacob Faibussowitsch { 1070bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1071bd0c2dcbSBarry Smith 1072bd0c2dcbSBarry Smith PetscFunctionBegin; 10739566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1075bd0c2dcbSBarry Smith } 1076bd0c2dcbSBarry Smith 1077ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1078d71ae5a4SJacob Faibussowitsch { 1079416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 108001ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10813a40ed3dSBarry Smith 10823a40ed3dSBarry Smith PetscFunctionBegin; 10839566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10849566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10869566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1088da3a660dSBarry Smith } 1089da3a660dSBarry Smith 1090ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1091d71ae5a4SJacob Faibussowitsch { 1092416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1093da3a660dSBarry Smith 10943a40ed3dSBarry Smith PetscFunctionBegin; 1095da3a660dSBarry Smith /* do nondiagonal part */ 10969566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1097da3a660dSBarry Smith /* do local part */ 10989566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10999613dc34SJunchao Zhang /* add partial results together */ 11009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1103da3a660dSBarry Smith } 1104da3a660dSBarry Smith 1105ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1106d71ae5a4SJacob Faibussowitsch { 11074f423910Svictorle MPI_Comm comm; 1108ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1109ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1110cd0d46ebSvictorle IS Me, Notme; 1111b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 111254d735aeSStefano Zampini PetscBool lf; 1113b1d57f15SBarry Smith PetscMPIInt size; 1114cd0d46ebSvictorle 1115cd0d46ebSvictorle PetscFunctionBegin; 111642e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 11179566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 1118462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11193ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11223ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 112342e5f5b4Svictorle 11247dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11259566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11269566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1128cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1129cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11309566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11319566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11329566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 113366501d38Svictorle Aoff = Aoffs[0]; 11349566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 113566501d38Svictorle Boff = Boffs[0]; 11369566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11379566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11389566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11419566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1143cd0d46ebSvictorle } 1144cd0d46ebSvictorle 1145ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1146d71ae5a4SJacob Faibussowitsch { 1147416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1148da3a660dSBarry Smith 11493a40ed3dSBarry Smith PetscFunctionBegin; 1150da3a660dSBarry Smith /* do nondiagonal part */ 11519566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1152da3a660dSBarry Smith /* do local part */ 11539566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11549613dc34SJunchao Zhang /* add partial results together */ 11559566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11569566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1158da3a660dSBarry Smith } 1159da3a660dSBarry Smith 11601eb62cbbSBarry Smith /* 11611eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11621eb62cbbSBarry Smith diagonal block 11631eb62cbbSBarry Smith */ 1164ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1165d71ae5a4SJacob Faibussowitsch { 1166416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11673a40ed3dSBarry Smith 11683a40ed3dSBarry Smith PetscFunctionBegin; 116908401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1170aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11719566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11731eb62cbbSBarry Smith } 11741eb62cbbSBarry Smith 1175ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1176d71ae5a4SJacob Faibussowitsch { 1177052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11783a40ed3dSBarry Smith 11793a40ed3dSBarry Smith PetscFunctionBegin; 11809566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11819566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1183052efed2SBarry Smith } 1184052efed2SBarry Smith 1185ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1186d71ae5a4SJacob Faibussowitsch { 11878e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11888e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11898e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11903ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11912e5835c6SStefano Zampini const PetscScalar *aa, *ba; 119217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 119317a3732bSBarry Smith PetscInt64 nz, hnz; 11943ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11953ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11963ea6fe3dSLisandro Dalcin PetscScalar *matvals; 119717a3732bSBarry Smith PetscMPIInt rank; 11988e2fed03SBarry Smith 11998e2fed03SBarry Smith PetscFunctionBegin; 12009566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 12013ea6fe3dSLisandro Dalcin 12023ea6fe3dSLisandro Dalcin M = mat->rmap->N; 12033ea6fe3dSLisandro Dalcin N = mat->cmap->N; 12043ea6fe3dSLisandro Dalcin m = mat->rmap->n; 12053ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 12063ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 12078e2fed03SBarry Smith nz = A->nz + B->nz; 12083ea6fe3dSLisandro Dalcin 12093ea6fe3dSLisandro Dalcin /* write matrix header */ 12100700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 12119371c9d4SSatish Balay header[1] = M; 12129371c9d4SSatish Balay header[2] = N; 121317a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 121417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 1215835f2295SStefano Zampini if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 12169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12178e2fed03SBarry Smith 12183ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12203ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12219566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12229566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12238e2fed03SBarry Smith 12243ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12263ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12273ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12283ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12293ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12308e2fed03SBarry Smith } 12319371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12329371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12338e2fed03SBarry Smith } 123417a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12359566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12369566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12378e2fed03SBarry Smith 12383ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12423ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12433ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12443ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12452e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12468e2fed03SBarry Smith } 12479371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12489371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12498e2fed03SBarry Smith } 12509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 125217a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12539566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12549566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12558e2fed03SBarry Smith 12563ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12579566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12598e2fed03SBarry Smith } 12608e2fed03SBarry Smith 12619804daf3SBarry Smith #include <petscdraw.h> 1262ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1263d71ae5a4SJacob Faibussowitsch { 126444a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 126532dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 1266ace3abfcSBarry Smith PetscBool isdraw, iascii, isbinary; 1267b0a32e0cSBarry Smith PetscViewer sviewer; 1268f3ef73ceSBarry Smith PetscViewerFormat format; 1269416022c9SBarry Smith 12703a40ed3dSBarry Smith PetscFunctionBegin; 12719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 127432077d6dSBarry Smith if (iascii) { 12759566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1276ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 12771690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1280835f2295SStefano Zampini for (i = 0; i < size; i++) { 1281ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1282ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1283ef5fdb51SBarry Smith navg += nz[i]; 1284ef5fdb51SBarry Smith } 12859566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1286ef5fdb51SBarry Smith navg = navg / size; 12879566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1289ef5fdb51SBarry Smith } 12909566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1291456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12924e220ebcSLois Curfman McInnes MatInfo info; 12936335e310SSatish Balay PetscInt *inodes = NULL; 1294923f20ffSKris Buschelman 12959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12969566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12979566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1299923f20ffSKris Buschelman if (!inodes) { 13009371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1301835f2295SStefano Zampini info.memory)); 13026831982aSBarry Smith } else { 1303835f2295SStefano Zampini PetscCall( 1304835f2295SStefano Zampini PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory)); 13056831982aSBarry Smith } 13069566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 13079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13089566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13109566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13139566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1315fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1316923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13179566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1318923f20ffSKris Buschelman if (inodes) { 13199566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1320d38fa0fbSBarry Smith } else { 13219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1322d38fa0fbSBarry Smith } 13233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13244aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132608480c60SBarry Smith } 13278e2fed03SBarry Smith } else if (isbinary) { 13288e2fed03SBarry Smith if (size == 1) { 13299566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13309566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13318e2fed03SBarry Smith } else { 13329566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13338e2fed03SBarry Smith } 13343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 133571e56450SStefano Zampini } else if (iascii && size == 1) { 13369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13379566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13390f5bd95cSBarry Smith } else if (isdraw) { 1340b0a32e0cSBarry Smith PetscDraw draw; 1341ace3abfcSBarry Smith PetscBool isnull; 13429566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13439566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13443ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 134519bcc07fSBarry Smith } 134619bcc07fSBarry Smith 134771e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 134871e56450SStefano Zampini Mat A = NULL, Av; 134971e56450SStefano Zampini IS isrow, iscol; 13502ee70a88SLois Curfman McInnes 13519566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13529566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13539566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13549566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 135571e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 135671e56450SStefano Zampini /* 135771e56450SStefano Zampini Mat *AA, A = NULL, Av; 135871e56450SStefano Zampini IS isrow,iscol; 135971e56450SStefano Zampini 13609566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13619566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13629566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1363dd400576SPatrick Sanan if (rank == 0) { 13649566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 136571e56450SStefano Zampini A = AA[0]; 136671e56450SStefano Zampini Av = AA[0]; 136795373324SBarry Smith } 13689566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136971e56450SStefano Zampini */ 13709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 137255843e3eSBarry Smith /* 137355843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1374b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 137555843e3eSBarry Smith */ 13769566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1377dd400576SPatrick Sanan if (rank == 0) { 137848a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13799566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 138095373324SBarry Smith } 13819566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 138395373324SBarry Smith } 13843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13851eb62cbbSBarry Smith } 13861eb62cbbSBarry Smith 1387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1388d71ae5a4SJacob Faibussowitsch { 1389ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 1390416022c9SBarry Smith 13913a40ed3dSBarry Smith PetscFunctionBegin; 13929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 13939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13959566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 139648a46eb9SPierre Jolivet if (iascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1398416022c9SBarry Smith } 1399416022c9SBarry Smith 1400ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1401d71ae5a4SJacob Faibussowitsch { 140244a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1403f4259b30SLisandro Dalcin Vec bb1 = NULL; 1404ace3abfcSBarry Smith PetscBool hasop; 14058a729477SBarry Smith 14063a40ed3dSBarry Smith PetscFunctionBegin; 1407a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 14089566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1410a2b30743SBarry Smith } 1411a2b30743SBarry Smith 141248a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14134e980039SJed Brown 1414c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1415da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14172798e883SHong Zhang its--; 1418da3a660dSBarry Smith } 14192798e883SHong Zhang 14202798e883SHong Zhang while (its--) { 14219566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14229566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14232798e883SHong Zhang 1424c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14259566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14269566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14272798e883SHong Zhang 1428c14dc6b6SHong Zhang /* local sweep */ 14299566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14302798e883SHong Zhang } 14313a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1432da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14342798e883SHong Zhang its--; 1435da3a660dSBarry Smith } 14362798e883SHong Zhang while (its--) { 14379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14389566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14392798e883SHong Zhang 1440c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14419566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14429566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1443c14dc6b6SHong Zhang 1444c14dc6b6SHong Zhang /* local sweep */ 14459566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14462798e883SHong Zhang } 14473a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1448da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14499566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14502798e883SHong Zhang its--; 1451da3a660dSBarry Smith } 14522798e883SHong Zhang while (its--) { 14539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14552798e883SHong Zhang 1456c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14579566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14589566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14592798e883SHong Zhang 1460c14dc6b6SHong Zhang /* local sweep */ 14619566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14622798e883SHong Zhang } 1463a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1464a7420bb7SBarry Smith Vec xx1; 1465a7420bb7SBarry Smith 14669566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1468a7420bb7SBarry Smith 14699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1471a7420bb7SBarry Smith if (!mat->diag) { 14729566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14739566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1474a7420bb7SBarry Smith } 14759566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1476bd0c2dcbSBarry Smith if (hasop) { 14779566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1478bd0c2dcbSBarry Smith } else { 14799566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1480bd0c2dcbSBarry Smith } 14819566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1482887ee2caSBarry Smith 14839566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1484a7420bb7SBarry Smith 1485a7420bb7SBarry Smith /* local sweep */ 14869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14879566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14889566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1489ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1490c14dc6b6SHong Zhang 14919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1492a0808db4SHong Zhang 14937b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14958a729477SBarry Smith } 1496a66be287SLois Curfman McInnes 1497ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1498d71ae5a4SJacob Faibussowitsch { 149972e6a0cfSJed Brown Mat aA, aB, Aperm; 150072e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 150172e6a0cfSJed Brown PetscScalar *aa, *ba; 150272e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 150372e6a0cfSJed Brown PetscSF rowsf, sf; 15040298fd71SBarry Smith IS parcolp = NULL; 150572e6a0cfSJed Brown PetscBool done; 150642e855d1Svictor 150742e855d1Svictor PetscFunctionBegin; 15089566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15109566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15119566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 151272e6a0cfSJed Brown 151372e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15149566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15169566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 151772e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15199566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 152072e6a0cfSJed Brown 152172e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15229566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15249566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 152572e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15269566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15279566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15289566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152972e6a0cfSJed Brown 15309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15319566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15329566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 153372e6a0cfSJed Brown 153472e6a0cfSJed Brown /* Find out where my gcols should go */ 15359566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15379566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15389566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15399566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15429566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 154372e6a0cfSJed Brown 15449566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15459566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15469566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 154772e6a0cfSJed Brown for (i = 0; i < m; i++) { 1548131c27b5Sprj- PetscInt row = rdest[i]; 1549131c27b5Sprj- PetscMPIInt rowner; 15509566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 155172e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1552131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1553131c27b5Sprj- PetscMPIInt cowner; 15549566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 155572e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155672e6a0cfSJed Brown else onnz[i]++; 155772e6a0cfSJed Brown } 155872e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1559131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1560131c27b5Sprj- PetscMPIInt cowner; 15619566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 156272e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 156372e6a0cfSJed Brown else onnz[i]++; 156472e6a0cfSJed Brown } 156572e6a0cfSJed Brown } 15669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15709566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 157172e6a0cfSJed Brown 15729566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 157572e6a0cfSJed Brown for (i = 0; i < m; i++) { 157672e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1577970468b0SJed Brown PetscInt j0, rowlen; 157872e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1579970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1580970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15819566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1582970468b0SJed Brown } 158372e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1584970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1585970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15869566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1587970468b0SJed Brown } 158872e6a0cfSJed Brown } 15899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15919566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15929566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15959566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15969566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15979566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15989566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159972e6a0cfSJed Brown *B = Aperm; 16003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 160142e855d1Svictor } 160242e855d1Svictor 1603ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1604d71ae5a4SJacob Faibussowitsch { 1605c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1606c5e4d11fSDmitry Karpeev 1607c5e4d11fSDmitry Karpeev PetscFunctionBegin; 16089566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1609c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1611c5e4d11fSDmitry Karpeev } 1612c5e4d11fSDmitry Karpeev 1613ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1614d71ae5a4SJacob Faibussowitsch { 1615a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1616a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16173966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1618a66be287SLois Curfman McInnes 16193a40ed3dSBarry Smith PetscFunctionBegin; 16204e220ebcSLois Curfman McInnes info->block_size = 1.0; 16219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16222205254eSKarl Rupp 16239371c9d4SSatish Balay isend[0] = info->nz_used; 16249371c9d4SSatish Balay isend[1] = info->nz_allocated; 16259371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16269371c9d4SSatish Balay isend[3] = info->memory; 16279371c9d4SSatish Balay isend[4] = info->mallocs; 16282205254eSKarl Rupp 16299566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16302205254eSKarl Rupp 16319371c9d4SSatish Balay isend[0] += info->nz_used; 16329371c9d4SSatish Balay isend[1] += info->nz_allocated; 16339371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16349371c9d4SSatish Balay isend[3] += info->memory; 16359371c9d4SSatish Balay isend[4] += info->mallocs; 1636a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16374e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16384e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16394e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16404e220ebcSLois Curfman McInnes info->memory = isend[3]; 16414e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1642a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1643462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16442205254eSKarl Rupp 16454e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16464e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16474e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16484e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16494e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1650a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1651462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16522205254eSKarl Rupp 16534e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16544e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16554e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16564e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16574e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1658a66be287SLois Curfman McInnes } 16594e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16604e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16614e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1663a66be287SLois Curfman McInnes } 1664a66be287SLois Curfman McInnes 1665d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1666d71ae5a4SJacob Faibussowitsch { 1667c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1668c74985f6SBarry Smith 16693a40ed3dSBarry Smith PetscFunctionBegin; 167012c028f9SKris Buschelman switch (op) { 1671512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 167212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 167328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1674a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 167512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16760ad02fcaSStefano Zampini case MAT_USE_INODES: 167712c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16781a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1679fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168212c028f9SKris Buschelman break; 168312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 168443674050SBarry Smith MatCheckPreallocated(A, 1); 16854e0d8c25SBarry Smith a->roworiented = flg; 16862205254eSKarl Rupp 16879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16889566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168912c028f9SKris Buschelman break; 1690d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1691d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1692d71ae5a4SJacob Faibussowitsch break; 1693c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1694ffa07934SHong Zhang case MAT_SPD: 169577e54ba9SKris Buschelman case MAT_SYMMETRIC: 169677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1697bf108f30SBarry Smith case MAT_HERMITIAN: 1698bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1699b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1700b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1701b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 17029725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 170377e54ba9SKris Buschelman break; 1704d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1705d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1706d71ae5a4SJacob Faibussowitsch break; 1707d71ae5a4SJacob Faibussowitsch default: 1708888c827cSStefano Zampini break; 17093a40ed3dSBarry Smith } 17103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1711c74985f6SBarry Smith } 1712c74985f6SBarry Smith 1713d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1714d71ae5a4SJacob Faibussowitsch { 1715154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1717d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1718d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1719b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 172039e00950SLois Curfman McInnes 17213a40ed3dSBarry Smith PetscFunctionBegin; 172228b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17237a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17247a0afa10SBarry Smith 172570f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17267a0afa10SBarry Smith /* 17277a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17287a0afa10SBarry Smith */ 17297a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1730b1d57f15SBarry Smith PetscInt max = 1, tmp; 1731d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17327a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17332205254eSKarl Rupp if (max < tmp) max = tmp; 17347a0afa10SBarry Smith } 17359566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17367a0afa10SBarry Smith } 17377a0afa10SBarry Smith 1738aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1739abc0e9e4SLois Curfman McInnes lrow = row - rstart; 174039e00950SLois Curfman McInnes 17419371c9d4SSatish Balay pvA = &vworkA; 17429371c9d4SSatish Balay pcA = &cworkA; 17439371c9d4SSatish Balay pvB = &vworkB; 17449371c9d4SSatish Balay pcB = &cworkB; 17459371c9d4SSatish Balay if (!v) { 17469371c9d4SSatish Balay pvA = NULL; 17479371c9d4SSatish Balay pvB = NULL; 17489371c9d4SSatish Balay } 17499371c9d4SSatish Balay if (!idx) { 17509371c9d4SSatish Balay pcA = NULL; 17519371c9d4SSatish Balay if (!v) pcB = NULL; 17529371c9d4SSatish Balay } 17539566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17549566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1755154123eaSLois Curfman McInnes nztot = nzA + nzB; 1756154123eaSLois Curfman McInnes 175770f0671dSBarry Smith cmap = mat->garray; 1758154123eaSLois Curfman McInnes if (v || idx) { 1759154123eaSLois Curfman McInnes if (nztot) { 1760154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1761b1d57f15SBarry Smith PetscInt imark = -1; 1762154123eaSLois Curfman McInnes if (v) { 176370f0671dSBarry Smith *v = v_p = mat->rowvalues; 176439e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176570f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1766154123eaSLois Curfman McInnes else break; 1767154123eaSLois Curfman McInnes } 1768154123eaSLois Curfman McInnes imark = i; 176970f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 177070f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1771154123eaSLois Curfman McInnes } 1772154123eaSLois Curfman McInnes if (idx) { 177370f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177470f0671dSBarry Smith if (imark > -1) { 1775ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177670f0671dSBarry Smith } else { 1777154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177870f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1779154123eaSLois Curfman McInnes else break; 1780154123eaSLois Curfman McInnes } 1781154123eaSLois Curfman McInnes imark = i; 178270f0671dSBarry Smith } 178370f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178470f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178539e00950SLois Curfman McInnes } 17863f97c4b0SBarry Smith } else { 1787f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1788f4259b30SLisandro Dalcin if (v) *v = NULL; 17891ca473b0SSatish Balay } 1790154123eaSLois Curfman McInnes } 179139e00950SLois Curfman McInnes *nz = nztot; 17929566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17939566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179539e00950SLois Curfman McInnes } 179639e00950SLois Curfman McInnes 1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1798d71ae5a4SJacob Faibussowitsch { 17997a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 18003a40ed3dSBarry Smith 18013a40ed3dSBarry Smith PetscFunctionBegin; 180228b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18037a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180539e00950SLois Curfman McInnes } 180639e00950SLois Curfman McInnes 1807ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1808d71ae5a4SJacob Faibussowitsch { 1809855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1810ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 1811d0f46423SBarry Smith PetscInt i, j, cstart = mat->cmap->rstart; 1812329f5518SBarry Smith PetscReal sum = 0.0; 1813fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181404ca555eSLois Curfman McInnes 18153a40ed3dSBarry Smith PetscFunctionBegin; 181617699dbbSLois Curfman McInnes if (aij->size == 1) { 18179566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181837fa93a5SLois Curfman McInnes } else { 18199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 182104ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1822fff043a9SJunchao Zhang v = amata; 182304ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18249371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18259371c9d4SSatish Balay v++; 182604ca555eSLois Curfman McInnes } 1827fff043a9SJunchao Zhang v = bmata; 182804ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18299371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18309371c9d4SSatish Balay v++; 183104ca555eSLois Curfman McInnes } 1832462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18338f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18349566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18353a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 1836e91c04dfSPierre Jolivet PetscReal *tmp; 1837b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 18389566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &tmp)); 183904ca555eSLois Curfman McInnes *norm = 0.0; 18409371c9d4SSatish Balay v = amata; 18419371c9d4SSatish Balay jj = amat->j; 184204ca555eSLois Curfman McInnes for (j = 0; j < amat->nz; j++) { 18439371c9d4SSatish Balay tmp[cstart + *jj++] += PetscAbsScalar(*v); 18449371c9d4SSatish Balay v++; 184504ca555eSLois Curfman McInnes } 18469371c9d4SSatish Balay v = bmata; 18479371c9d4SSatish Balay jj = bmat->j; 184804ca555eSLois Curfman McInnes for (j = 0; j < bmat->nz; j++) { 18499371c9d4SSatish Balay tmp[garray[*jj++]] += PetscAbsScalar(*v); 18509371c9d4SSatish Balay v++; 185104ca555eSLois Curfman McInnes } 1852e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 1853d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 1854e91c04dfSPierre Jolivet if (tmp[j] > *norm) *norm = tmp[j]; 185504ca555eSLois Curfman McInnes } 18569566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 18579566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 18583a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1859329f5518SBarry Smith PetscReal ntemp = 0.0; 1860d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18618e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186204ca555eSLois Curfman McInnes sum = 0.0; 186304ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18649371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18659371c9d4SSatish Balay v++; 186604ca555eSLois Curfman McInnes } 18678e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186804ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18699371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18709371c9d4SSatish Balay v++; 187104ca555eSLois Curfman McInnes } 1872515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187304ca555eSLois Curfman McInnes } 1874462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18759566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1876ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 187937fa93a5SLois Curfman McInnes } 18803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1881855ac2c5SLois Curfman McInnes } 1882855ac2c5SLois Curfman McInnes 1883ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1884d71ae5a4SJacob Faibussowitsch { 1885a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1886a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1887071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1888071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1889a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1890ce496241SStefano Zampini const MatScalar *pbv, *bv; 1891b7c46309SBarry Smith 18923a40ed3dSBarry Smith PetscFunctionBegin; 18937fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18949371c9d4SSatish Balay ma = A->rmap->n; 18959371c9d4SSatish Balay na = A->cmap->n; 18969371c9d4SSatish Balay mb = a->B->rmap->n; 18979371c9d4SSatish Balay nb = a->B->cmap->n; 18989371c9d4SSatish Balay ai = Aloc->i; 18999371c9d4SSatish Balay aj = Aloc->j; 19009371c9d4SSatish Balay bi = Bloc->i; 19019371c9d4SSatish Balay bj = Bloc->j; 1902fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190380bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190480bcc5a1SJed Brown PetscSFNode *oloc; 1905713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190680bcc5a1SJed Brown 19079566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190880bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19099566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1910cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191180bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19129566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191380bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191480bcc5a1SJed Brown /* map those to global */ 19159566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19169566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19179566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 191957168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 192057168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19219566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1922d4bb536fSBarry Smith 19239566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 1925*58b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs)); 19269566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19289566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1929fc4dec0aSBarry Smith } else { 1930fc4dec0aSBarry Smith B = *matout; 19319566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1932fc4dec0aSBarry Smith } 1933b7c46309SBarry Smith 1934f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1935a8661f62Sandi selinger A_diag = a->A; 1936a8661f62Sandi selinger B_diag = &b->A; 1937a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1938a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1939a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1940a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1941f79cb1a0Sandi selinger 1942f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1943ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1944f79cb1a0Sandi selinger 19454cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1946a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19477fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19489566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1949f79cb1a0Sandi selinger 1950b7c46309SBarry Smith /* copy over the B part */ 19519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1953ce496241SStefano Zampini pbv = bv; 1954d0f46423SBarry Smith row = A->rmap->rstart; 19552205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195661a2fbbaSHong Zhang cols_tmp = cols; 1957da668accSHong Zhang for (i = 0; i < mb; i++) { 1958da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19599566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19602205254eSKarl Rupp row++; 1961720a2405SPierre Jolivet if (pbv) pbv += ncol; 1962720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1963b7c46309SBarry Smith } 19649566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1966fc73b1b3SBarry Smith 19679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1969cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19700de55854SLois Curfman McInnes *matout = B; 19710de55854SLois Curfman McInnes } else { 19729566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19730de55854SLois Curfman McInnes } 19743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1975b7c46309SBarry Smith } 1976b7c46309SBarry Smith 1977ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1978d71ae5a4SJacob Faibussowitsch { 19794b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19804b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1981b1d57f15SBarry Smith PetscInt s1, s2, s3; 1982a008b906SSatish Balay 19833a40ed3dSBarry Smith PetscFunctionBegin; 19849566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19854b967eb1SSatish Balay if (rr) { 19869566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198708401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19884b967eb1SSatish Balay /* Overlap communication with computation. */ 19899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1990a008b906SSatish Balay } 19914b967eb1SSatish Balay if (ll) { 19929566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199308401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1994dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19954b967eb1SSatish Balay } 19964b967eb1SSatish Balay /* scale the diagonal block */ 1997dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19984b967eb1SSatish Balay 19994b967eb1SSatish Balay if (rr) { 20004b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2002dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20034b967eb1SSatish Balay } 20043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2005a008b906SSatish Balay } 2006a008b906SSatish Balay 2007ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2008d71ae5a4SJacob Faibussowitsch { 2009bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20103a40ed3dSBarry Smith 20113a40ed3dSBarry Smith PetscFunctionBegin; 20129566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2014bb5a7306SBarry Smith } 2015bb5a7306SBarry Smith 2016ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2017d71ae5a4SJacob Faibussowitsch { 2018d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2019d4bb536fSBarry Smith Mat a, b, c, d; 2020ace3abfcSBarry Smith PetscBool flg; 2021d4bb536fSBarry Smith 20223a40ed3dSBarry Smith PetscFunctionBegin; 20239371c9d4SSatish Balay a = matA->A; 20249371c9d4SSatish Balay b = matA->B; 20259371c9d4SSatish Balay c = matB->A; 20269371c9d4SSatish Balay d = matB->B; 2027d4bb536fSBarry Smith 20289566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 202948a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 2030462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2032d4bb536fSBarry Smith } 2033d4bb536fSBarry Smith 2034ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2035d71ae5a4SJacob Faibussowitsch { 2036cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2037cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2038cb5b572fSBarry Smith 2039cb5b572fSBarry Smith PetscFunctionBegin; 204033f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204133f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2042cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2043cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2044cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2045cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2046cb5b572fSBarry Smith then copying the submatrices */ 20479566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2048cb5b572fSBarry Smith } else { 20499566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20509566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2051cb5b572fSBarry Smith } 20529566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2054cb5b572fSBarry Smith } 2055cb5b572fSBarry Smith 2056001ddc4fSHong Zhang /* 2057001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2058001ddc4fSHong Zhang have different nonzero structure. 2059001ddc4fSHong Zhang */ 2060d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2061d71ae5a4SJacob Faibussowitsch { 2062001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206395b7e79eSJed Brown 206495b7e79eSJed Brown PetscFunctionBegin; 206595b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206695b7e79eSJed Brown for (i = 0; i < m; i++) { 20678e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2068001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2069001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 207095b7e79eSJed Brown nnz[i] = 0; 207195b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2072001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2073001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207495b7e79eSJed Brown nnz[i]++; 207595b7e79eSJed Brown } 207695b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207795b7e79eSJed Brown } 20783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207995b7e79eSJed Brown } 208095b7e79eSJed Brown 2081001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2082d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2083d71ae5a4SJacob Faibussowitsch { 2084001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2085001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2086001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2087001ddc4fSHong Zhang 2088001ddc4fSHong Zhang PetscFunctionBegin; 20899566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2091001ddc4fSHong Zhang } 2092001ddc4fSHong Zhang 2093ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2094d71ae5a4SJacob Faibussowitsch { 2095ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2096ac90fabeSBarry Smith 2097ac90fabeSBarry Smith PetscFunctionBegin; 2098ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 20999566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 21009566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2101ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21029566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2103ac90fabeSBarry Smith } else { 21049f5f6813SShri Abhyankar Mat B; 21059f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2106d9d719b4SStefano Zampini 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21099566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21109566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21119566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21129566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21139566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21149566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21159566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21169566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21179566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21189566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21199566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2120ac90fabeSBarry Smith } 21213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2122ac90fabeSBarry Smith } 2123ac90fabeSBarry Smith 21242726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2125354c94deSBarry Smith 2126ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2127d71ae5a4SJacob Faibussowitsch { 21285f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 21295f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 2130354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2131354c94deSBarry Smith 21329566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21339566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21345f80ce2aSJacob Faibussowitsch } 21353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2136354c94deSBarry Smith } 2137354c94deSBarry Smith 2138ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2139d71ae5a4SJacob Faibussowitsch { 214099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214199cafbc1SBarry Smith 214299cafbc1SBarry Smith PetscFunctionBegin; 21439566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21449566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214699cafbc1SBarry Smith } 214799cafbc1SBarry Smith 2148ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2149d71ae5a4SJacob Faibussowitsch { 215099cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215199cafbc1SBarry Smith 215299cafbc1SBarry Smith PetscFunctionBegin; 21539566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21549566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215699cafbc1SBarry Smith } 215799cafbc1SBarry Smith 2158ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2159d71ae5a4SJacob Faibussowitsch { 2160c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2161475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 216262e5df07SMark Adams PetscScalar *vv; 2163475b8b61SHong Zhang Vec vB, vA; 216462e5df07SMark Adams const PetscScalar *va, *vb; 2165c91732d9SHong Zhang 2166c91732d9SHong Zhang PetscFunctionBegin; 2167c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21689566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2169475b8b61SHong Zhang 217062e5df07SMark Adams PetscCall(VecGetArrayRead(vA, &va)); 2171c91732d9SHong Zhang if (idx) { 2172475b8b61SHong Zhang for (i = 0; i < m; i++) { 2173d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2174c91732d9SHong Zhang } 2175c91732d9SHong Zhang } 2176c91732d9SHong Zhang 2177c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21799566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2180c91732d9SHong Zhang 21819566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21829566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2183475b8b61SHong Zhang for (i = 0; i < m; i++) { 2184c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2185475b8b61SHong Zhang vv[i] = vb[i]; 2186c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2187475b8b61SHong Zhang } else { 2188475b8b61SHong Zhang vv[i] = va[i]; 21899371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2190c91732d9SHong Zhang } 2191c91732d9SHong Zhang } 219262e5df07SMark Adams PetscCall(VecRestoreArrayWrite(v, &vv)); 219362e5df07SMark Adams PetscCall(VecRestoreArrayRead(vA, &va)); 21949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21959566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2199c91732d9SHong Zhang } 2200c91732d9SHong Zhang 2201eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2202eede4a3fSMark Adams { 2203eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2204eede4a3fSMark Adams Vec vB, vA; 2205eede4a3fSMark Adams 2206eede4a3fSMark Adams PetscFunctionBegin; 2207c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2208eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2209c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2210eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2211eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2212eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2213eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2214eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2215eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2216eede4a3fSMark Adams } 2217eede4a3fSMark Adams 2218ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2219d71ae5a4SJacob Faibussowitsch { 2220f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2221f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2222f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2223f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2224f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2225f07e67edSHong Zhang Vec diagV, offdiagV; 2226ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2227ce496241SStefano Zampini const PetscScalar *ba, *bav; 2228f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2229f07e67edSHong Zhang Mat B = mat->B; 2230f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2231c87e5d42SMatthew Knepley 2232c87e5d42SMatthew Knepley PetscFunctionBegin; 2233f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2234f07e67edSHong Zhang if (A->cmap->N == n) { 22359566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22369566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22379566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2241f07e67edSHong Zhang } else if (n == 0) { 2242f07e67edSHong Zhang if (m) { 22439566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22449371c9d4SSatish Balay for (r = 0; r < m; r++) { 22459371c9d4SSatish Balay a[r] = 0.0; 22469371c9d4SSatish Balay if (idx) idx[r] = -1; 22479371c9d4SSatish Balay } 22489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2249f07e67edSHong Zhang } 22503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2251f07e67edSHong Zhang } 2252f07e67edSHong Zhang 22539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22549566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22559566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22569566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2257f07e67edSHong Zhang 2258f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2260ce496241SStefano Zampini ba = bav; 2261f07e67edSHong Zhang bi = b->i; 2262f07e67edSHong Zhang bj = b->j; 22639566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2264f07e67edSHong Zhang for (r = 0; r < m; r++) { 2265f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2266f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22679371c9d4SSatish Balay offdiagA[r] = *ba; 22689371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2269f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2270f07e67edSHong Zhang offdiagA[r] = 0.0; 2271f07e67edSHong Zhang 2272f07e67edSHong Zhang /* Find first hole in the cmap */ 2273f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2274f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2275f07e67edSHong Zhang if (col > j && j < cstart) { 2276f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2277f07e67edSHong Zhang break; 2278f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2279f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2280f07e67edSHong Zhang break; 2281f07e67edSHong Zhang } 2282f07e67edSHong Zhang } 22834e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2284f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2285f07e67edSHong Zhang if (ncols == 0) { 2286f07e67edSHong Zhang if (cstart) { 2287f07e67edSHong Zhang offdiagIdx[r] = 0; 2288f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2289f07e67edSHong Zhang } else { /* ncols > 0 */ 2290f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2291f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2292f07e67edSHong Zhang } 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang } 2295f07e67edSHong Zhang 2296f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22979371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22989371c9d4SSatish Balay offdiagA[r] = *ba; 22999371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 23009371c9d4SSatish Balay } 23019371c9d4SSatish Balay ba++; 23029371c9d4SSatish Balay bj++; 2303f07e67edSHong Zhang } 2304f07e67edSHong Zhang } 2305f07e67edSHong Zhang 23069566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23079566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2308f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2309f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2310f07e67edSHong Zhang a[r] = diagA[r]; 2311f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2312f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2313f07e67edSHong Zhang a[r] = diagA[r]; 2314c87e5d42SMatthew Knepley if (idx) { 2315f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2316f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2317f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2318f07e67edSHong Zhang } 2319f07e67edSHong Zhang } else { 2320f07e67edSHong Zhang a[r] = offdiagA[r]; 2321f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2322c87e5d42SMatthew Knepley } 2323c87e5d42SMatthew Knepley } 23249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23309566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2332c87e5d42SMatthew Knepley } 2333c87e5d42SMatthew Knepley 2334ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2335d71ae5a4SJacob Faibussowitsch { 233603bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2337fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2338fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233903bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 234003bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234103bc72f1SMatthew Knepley Vec diagV, offdiagV; 2342ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2343ce496241SStefano Zampini const PetscScalar *ba, *bav; 2344fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2345fa213d2fSHong Zhang Mat B = mat->B; 2346fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234703bc72f1SMatthew Knepley 234803bc72f1SMatthew Knepley PetscFunctionBegin; 2349fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2350fa213d2fSHong Zhang if (A->cmap->N == n) { 23519566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23529566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23539566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23549566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2357fa213d2fSHong Zhang } else if (n == 0) { 2358fa213d2fSHong Zhang if (m) { 23599566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23609371c9d4SSatish Balay for (r = 0; r < m; r++) { 23619371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23629371c9d4SSatish Balay if (idx) idx[r] = -1; 23639371c9d4SSatish Balay } 23649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2365fa213d2fSHong Zhang } 23663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2367fa213d2fSHong Zhang } 2368fa213d2fSHong Zhang 23699566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23709566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23719566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23729566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2373fa213d2fSHong Zhang 2374fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2376ce496241SStefano Zampini ba = bav; 2377fa213d2fSHong Zhang bi = b->i; 2378fa213d2fSHong Zhang bj = b->j; 23799566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2380fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2381fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2382fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23839371c9d4SSatish Balay offdiagA[r] = *ba; 23849371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2385fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2386fa213d2fSHong Zhang offdiagA[r] = 0.0; 2387fa213d2fSHong Zhang 2388fa213d2fSHong Zhang /* Find first hole in the cmap */ 2389fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2390fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2391fa213d2fSHong Zhang if (col > j && j < cstart) { 2392fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2393fa213d2fSHong Zhang break; 2394fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2395fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2396fa213d2fSHong Zhang break; 2397fa213d2fSHong Zhang } 2398fa213d2fSHong Zhang } 23994e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2400fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2401fa213d2fSHong Zhang if (ncols == 0) { 2402fa213d2fSHong Zhang if (cstart) { 2403fa213d2fSHong Zhang offdiagIdx[r] = 0; 2404fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2405fa213d2fSHong Zhang } else { /* ncols > 0 */ 2406fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2407fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2408fa213d2fSHong Zhang } 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang } 2411fa213d2fSHong Zhang 2412fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24139371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24149371c9d4SSatish Balay offdiagA[r] = *ba; 24159371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24169371c9d4SSatish Balay } 24179371c9d4SSatish Balay ba++; 24189371c9d4SSatish Balay bj++; 2419fa213d2fSHong Zhang } 2420fa213d2fSHong Zhang } 2421fa213d2fSHong Zhang 24229566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2424fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2425fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242603bc72f1SMatthew Knepley a[r] = diagA[r]; 2427fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2428fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2429fa213d2fSHong Zhang a[r] = diagA[r]; 2430fa213d2fSHong Zhang if (idx) { 2431fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243203bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2433fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2434fa213d2fSHong Zhang } 243503bc72f1SMatthew Knepley } else { 243603bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2437fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243803bc72f1SMatthew Knepley } 243903bc72f1SMatthew Knepley } 24409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24439566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24469566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244803bc72f1SMatthew Knepley } 244903bc72f1SMatthew Knepley 2450ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2451d71ae5a4SJacob Faibussowitsch { 2452c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24531a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24541a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2455c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2456c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2457c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2458ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2459ce496241SStefano Zampini const PetscScalar *ba, *bav; 24601a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24611a254869SHong Zhang Mat B = mat->B; 24621a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2463c87e5d42SMatthew Knepley 2464c87e5d42SMatthew Knepley PetscFunctionBegin; 24651a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24661a254869SHong Zhang if (A->cmap->N == n) { 24679566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24689566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24699566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24719566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24731a254869SHong Zhang } else if (n == 0) { 24741a254869SHong Zhang if (m) { 24759566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24769371c9d4SSatish Balay for (r = 0; r < m; r++) { 24779371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24789371c9d4SSatish Balay if (idx) idx[r] = -1; 24799371c9d4SSatish Balay } 24809566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24811a254869SHong Zhang } 24823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24831a254869SHong Zhang } 24841a254869SHong Zhang 24859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24869566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24879566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24889566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24891a254869SHong Zhang 24901a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2492ce496241SStefano Zampini ba = bav; 24931a254869SHong Zhang bi = b->i; 24941a254869SHong Zhang bj = b->j; 24959566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24961a254869SHong Zhang for (r = 0; r < m; r++) { 24971a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24981a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24999371c9d4SSatish Balay offdiagA[r] = *ba; 25009371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25011a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25021a254869SHong Zhang offdiagA[r] = 0.0; 25031a254869SHong Zhang 25041a254869SHong Zhang /* Find first hole in the cmap */ 25051a254869SHong Zhang for (j = 0; j < ncols; j++) { 25061a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25071a254869SHong Zhang if (col > j && j < cstart) { 25081a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25091a254869SHong Zhang break; 25101a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25111a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25121a254869SHong Zhang break; 25131a254869SHong Zhang } 25141a254869SHong Zhang } 25154e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25161a254869SHong Zhang /* a hole is outside compressed Bcols */ 25171a254869SHong Zhang if (ncols == 0) { 25181a254869SHong Zhang if (cstart) { 25191a254869SHong Zhang offdiagIdx[r] = 0; 25201a254869SHong Zhang } else offdiagIdx[r] = cend; 25211a254869SHong Zhang } else { /* ncols > 0 */ 25221a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25231a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25241a254869SHong Zhang } 25251a254869SHong Zhang } 25261a254869SHong Zhang } 25271a254869SHong Zhang 25281a254869SHong Zhang for (j = 0; j < ncols; j++) { 25299371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25309371c9d4SSatish Balay offdiagA[r] = *ba; 25319371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25329371c9d4SSatish Balay } 25339371c9d4SSatish Balay ba++; 25349371c9d4SSatish Balay bj++; 25351a254869SHong Zhang } 25361a254869SHong Zhang } 25371a254869SHong Zhang 25389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25399566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25401a254869SHong Zhang for (r = 0; r < m; ++r) { 25411a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2542c87e5d42SMatthew Knepley a[r] = diagA[r]; 25431a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25441a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25451a254869SHong Zhang a[r] = diagA[r]; 25461a254869SHong Zhang if (idx) { 25471a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2548c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25491a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25501a254869SHong Zhang } 2551c87e5d42SMatthew Knepley } else { 2552c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25531a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2554c87e5d42SMatthew Knepley } 2555c87e5d42SMatthew Knepley } 25569566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25629566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2564c87e5d42SMatthew Knepley } 2565c87e5d42SMatthew Knepley 2566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2567d71ae5a4SJacob Faibussowitsch { 2568f6d58c54SBarry Smith Mat *dummy; 25695494a064SHong Zhang 25705494a064SHong Zhang PetscFunctionBegin; 25719566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2572f6d58c54SBarry Smith *newmat = *dummy; 25739566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25755494a064SHong Zhang } 25765494a064SHong Zhang 2577ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2578d71ae5a4SJacob Faibussowitsch { 2579bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2580bbead8a2SBarry Smith 2581bbead8a2SBarry Smith PetscFunctionBegin; 25829566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25837b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2585bbead8a2SBarry Smith } 2586bbead8a2SBarry Smith 2587d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2588d71ae5a4SJacob Faibussowitsch { 258973a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 259073a71a0fSBarry Smith 259173a71a0fSBarry Smith PetscFunctionBegin; 259208401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25939566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2594679944adSJunchao Zhang if (x->assembled) { 25959566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2596679944adSJunchao Zhang } else { 25979566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2598679944adSJunchao Zhang } 25999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 26009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260273a71a0fSBarry Smith } 2603bbead8a2SBarry Smith 2604ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2605d71ae5a4SJacob Faibussowitsch { 2606b1b1104fSBarry Smith PetscFunctionBegin; 2607b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2608b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2610b1b1104fSBarry Smith } 2611b1b1104fSBarry Smith 2612b1b1104fSBarry Smith /*@ 2613f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2614f2afee66SBarry Smith 26152ef1f0ffSBarry Smith Not Collective 2616f2afee66SBarry Smith 2617f2afee66SBarry Smith Input Parameter: 2618f2afee66SBarry Smith . A - the matrix 2619f2afee66SBarry Smith 2620f2afee66SBarry Smith Output Parameter: 2621f2afee66SBarry Smith . nz - the number of nonzeros 2622f2afee66SBarry Smith 2623f2afee66SBarry Smith Level: advanced 2624f2afee66SBarry Smith 2625fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2626f2afee66SBarry Smith @*/ 2627d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2628d71ae5a4SJacob Faibussowitsch { 2629f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2630f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2631dfebb78cSStefano Zampini PetscBool isaij; 2632f2afee66SBarry Smith 2633f2afee66SBarry Smith PetscFunctionBegin; 2634dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2635dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2636f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2638f2afee66SBarry Smith } 2639f2afee66SBarry Smith 2640f2afee66SBarry Smith /*@ 2641b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2642b1b1104fSBarry Smith 2643c3339decSBarry Smith Collective 2644b1b1104fSBarry Smith 2645b1b1104fSBarry Smith Input Parameters: 2646b1b1104fSBarry Smith + A - the matrix 264711a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2648b1b1104fSBarry Smith 264996a0c994SBarry Smith Level: advanced 265096a0c994SBarry Smith 2651fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2652b1b1104fSBarry Smith @*/ 2653d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2654d71ae5a4SJacob Faibussowitsch { 2655b1b1104fSBarry Smith PetscFunctionBegin; 2656cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2658b1b1104fSBarry Smith } 2659b1b1104fSBarry Smith 2660ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject) 2661d71ae5a4SJacob Faibussowitsch { 2662b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2663b1b1104fSBarry Smith 2664b1b1104fSBarry Smith PetscFunctionBegin; 2665d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2666b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26679566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26681baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2669d0609cedSBarry Smith PetscOptionsHeadEnd(); 26703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2671b1b1104fSBarry Smith } 2672b1b1104fSBarry Smith 2673ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2674d71ae5a4SJacob Faibussowitsch { 26757d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2676c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26777d68702bSBarry Smith 26787d68702bSBarry Smith PetscFunctionBegin; 2679c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26815519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2682b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2684b83222d8SBarry Smith aij->nonew = nonew; 26857d68702bSBarry Smith } 26869566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26887d68702bSBarry Smith } 26897d68702bSBarry Smith 2690ba38deedSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIAIJ(Mat A, PetscBool *missing, PetscInt *d) 2691d71ae5a4SJacob Faibussowitsch { 26923b49f96aSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 26933b49f96aSBarry Smith 26943b49f96aSBarry Smith PetscFunctionBegin; 269508401ef6SPierre Jolivet PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 26969566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 26973b49f96aSBarry Smith if (d) { 26983b49f96aSBarry Smith PetscInt rstart; 26999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 27003b49f96aSBarry Smith *d += rstart; 27013b49f96aSBarry Smith } 27023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27033b49f96aSBarry Smith } 27043b49f96aSBarry Smith 2705ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2706d71ae5a4SJacob Faibussowitsch { 2707a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2708a8ee9fb5SBarry Smith 2709a8ee9fb5SBarry Smith PetscFunctionBegin; 27109566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 27113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2712a8ee9fb5SBarry Smith } 27133b49f96aSBarry Smith 271458c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2715dec0b466SHong Zhang { 2716dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2717dec0b466SHong Zhang 2718dec0b466SHong Zhang PetscFunctionBegin; 271958c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 272058c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2722dec0b466SHong Zhang } 2723dec0b466SHong Zhang 2724cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2725cda55fadSBarry Smith MatGetRow_MPIAIJ, 2726cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2727cda55fadSBarry Smith MatMult_MPIAIJ, 272897304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27297c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27307c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2731f4259b30SLisandro Dalcin NULL, 2732f4259b30SLisandro Dalcin NULL, 2733f4259b30SLisandro Dalcin NULL, 2734f4259b30SLisandro Dalcin /*10*/ NULL, 2735f4259b30SLisandro Dalcin NULL, 2736f4259b30SLisandro Dalcin NULL, 273741f059aeSBarry Smith MatSOR_MPIAIJ, 2738b7c46309SBarry Smith MatTranspose_MPIAIJ, 273997304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2740cda55fadSBarry Smith MatEqual_MPIAIJ, 2741cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2742cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2743cda55fadSBarry Smith MatNorm_MPIAIJ, 274497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2745cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2746cda55fadSBarry Smith MatSetOption_MPIAIJ, 2747cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2748d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 2752f4259b30SLisandro Dalcin NULL, 275326cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2754f4259b30SLisandro Dalcin NULL, 2755f4259b30SLisandro Dalcin NULL, 2756a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2757f4259b30SLisandro Dalcin NULL, 2758d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2759f4259b30SLisandro Dalcin NULL, 2760f4259b30SLisandro Dalcin NULL, 2761f4259b30SLisandro Dalcin NULL, 2762f4259b30SLisandro Dalcin NULL, 2763d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27647dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2765cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2766cda55fadSBarry Smith MatGetValues_MPIAIJ, 2767cb5b572fSBarry Smith MatCopy_MPIAIJ, 2768d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2769cda55fadSBarry Smith MatScale_MPIAIJ, 27707d68702bSBarry Smith MatShift_MPIAIJ, 277199e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2772564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 277373a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27748a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27758a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2776f4259b30SLisandro Dalcin NULL, 2777f4259b30SLisandro Dalcin NULL, 277893dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2779f4259b30SLisandro Dalcin NULL, 2780cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 278172e6a0cfSJed Brown MatPermute_MPIAIJ, 2782f4259b30SLisandro Dalcin NULL, 27837dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2784e03a110bSBarry Smith MatDestroy_MPIAIJ, 2785e03a110bSBarry Smith MatView_MPIAIJ, 2786f4259b30SLisandro Dalcin NULL, 2787f4259b30SLisandro Dalcin NULL, 2788f4259b30SLisandro Dalcin /*64*/ NULL, 2789f996eeb8SHong Zhang MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2790f4259b30SLisandro Dalcin NULL, 2791f4259b30SLisandro Dalcin NULL, 2792f4259b30SLisandro Dalcin NULL, 2793d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIAIJ, 2794c87e5d42SMatthew Knepley MatGetRowMinAbs_MPIAIJ, 2795f4259b30SLisandro Dalcin NULL, 2796f4259b30SLisandro Dalcin NULL, 2797f4259b30SLisandro Dalcin NULL, 2798f4259b30SLisandro Dalcin NULL, 27993acb8795SBarry Smith /*75*/ MatFDColoringApply_AIJ, 2800b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2801f4259b30SLisandro Dalcin NULL, 2802f4259b30SLisandro Dalcin NULL, 2803f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 2804f4259b30SLisandro Dalcin /*80*/ NULL, 2805f4259b30SLisandro Dalcin NULL, 2806f4259b30SLisandro Dalcin NULL, 28075bba2384SShri Abhyankar /*83*/ MatLoad_MPIAIJ, 28086cff0a6bSPierre Jolivet NULL, 2809f4259b30SLisandro Dalcin NULL, 2810f4259b30SLisandro Dalcin NULL, 2811f4259b30SLisandro Dalcin NULL, 2812f4259b30SLisandro Dalcin NULL, 2813f4259b30SLisandro Dalcin /*89*/ NULL, 2814f4259b30SLisandro Dalcin NULL, 281526be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 2816f4259b30SLisandro Dalcin NULL, 2817f4259b30SLisandro Dalcin NULL, 2818cf3ca8ceSHong Zhang /*94*/ MatPtAPNumeric_MPIAIJ_MPIAIJ, 2819f4259b30SLisandro Dalcin NULL, 2820f4259b30SLisandro Dalcin NULL, 2821f4259b30SLisandro Dalcin NULL, 2822b470e4b4SRichard Tran Mills MatBindToCPU_MPIAIJ, 28234222ddf1SHong Zhang /*99*/ MatProductSetFromOptions_MPIAIJ, 2824f4259b30SLisandro Dalcin NULL, 2825f4259b30SLisandro Dalcin NULL, 28262fd7e33dSBarry Smith MatConjugate_MPIAIJ, 2827f4259b30SLisandro Dalcin NULL, 2828d519adbfSMatthew Knepley /*104*/ MatSetValuesRow_MPIAIJ, 282999cafbc1SBarry Smith MatRealPart_MPIAIJ, 283069db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2831f4259b30SLisandro Dalcin NULL, 2832f4259b30SLisandro Dalcin NULL, 2833f4259b30SLisandro Dalcin /*109*/ NULL, 2834f4259b30SLisandro Dalcin NULL, 28355494a064SHong Zhang MatGetRowMin_MPIAIJ, 2836f4259b30SLisandro Dalcin NULL, 28373b49f96aSBarry Smith MatMissingDiagonal_MPIAIJ, 2838d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIAIJ, 2839f4259b30SLisandro Dalcin NULL, 2840c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2841f4259b30SLisandro Dalcin NULL, 2842f4259b30SLisandro Dalcin NULL, 2843b215bc84SStefano Zampini /*119*/ MatMultDiagonalBlock_MPIAIJ, 2844f4259b30SLisandro Dalcin NULL, 2845f4259b30SLisandro Dalcin NULL, 2846f4259b30SLisandro Dalcin NULL, 2847b9614d88SDmitry Karpeev MatGetMultiProcBlock_MPIAIJ, 2848f2c98031SJed Brown /*124*/ MatFindNonzeroRows_MPIAIJ, 2849a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2850bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2851a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 28527dae84e0SHong Zhang MatCreateSubMatricesMPI_MPIAIJ, 2853f4259b30SLisandro Dalcin /*129*/ NULL, 2854f4259b30SLisandro Dalcin NULL, 2855f4259b30SLisandro Dalcin NULL, 2856187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2857f4259b30SLisandro Dalcin NULL, 2858f4259b30SLisandro Dalcin /*134*/ NULL, 2859f4259b30SLisandro Dalcin NULL, 2860f4259b30SLisandro Dalcin NULL, 2861f4259b30SLisandro Dalcin NULL, 2862f4259b30SLisandro Dalcin NULL, 286346533700Sstefano_zampini /*139*/ MatSetBlockSizes_MPIAIJ, 2864f4259b30SLisandro Dalcin NULL, 2865f4259b30SLisandro Dalcin NULL, 28669c8f2541SHong Zhang MatFDColoringSetUp_MPIXAIJ, 2867a0b6529bSBarry Smith MatFindOffBlockDiagonalEntries_MPIAIJ, 28684222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2869f4259b30SLisandro Dalcin /*145*/ NULL, 2870f4259b30SLisandro Dalcin NULL, 287172833a62Smarkadams4 NULL, 287272833a62Smarkadams4 MatCreateGraph_Simple_AIJ, 28732d776b49SBarry Smith NULL, 2874dec0b466SHong Zhang /*150*/ NULL, 2875eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28764cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 287742ce410bSJunchao Zhang NULL, 287842ce410bSJunchao Zhang NULL, 2879fe1fc275SAlexander /*155*/ NULL, 2880fe1fc275SAlexander MatCopyHashToXAIJ_MPI_Hash}; 288136ce4990SBarry Smith 2882ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2883d71ae5a4SJacob Faibussowitsch { 28842e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28852e8a6d31SBarry Smith 28862e8a6d31SBarry Smith PetscFunctionBegin; 28879566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28889566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28902e8a6d31SBarry Smith } 28912e8a6d31SBarry Smith 2892ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2893d71ae5a4SJacob Faibussowitsch { 28942e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28952e8a6d31SBarry Smith 28962e8a6d31SBarry Smith PetscFunctionBegin; 28979566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28989566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 29002e8a6d31SBarry Smith } 29018a729477SBarry Smith 2902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2903d71ae5a4SJacob Faibussowitsch { 2904ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29055d2a9ed1SStefano Zampini PetscMPIInt size; 2906a23d5eceSKris Buschelman 2907a23d5eceSKris Buschelman PetscFunctionBegin; 2908ad79cf63SBarry Smith if (B->hash_active) { 2909aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2910ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2911ad79cf63SBarry Smith } 29129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2914899cda47SBarry Smith 2915cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2916eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2917cb7b82ddSBarry Smith #else 29189566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2919cb7b82ddSBarry Smith #endif 29209566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 29229566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2923cb7b82ddSBarry Smith 29249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2925c508b908SBarry Smith 2926c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 29279566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 29289566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29309566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29319566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2932c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2933cb7b82ddSBarry Smith 2934c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2935ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29369566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29389566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29399566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2940c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2941899cda47SBarry Smith 29429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2944526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2945cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 294615001458SStefano Zampini B->assembled = PETSC_FALSE; 29473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2948a23d5eceSKris Buschelman } 2949a23d5eceSKris Buschelman 2950ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2951d71ae5a4SJacob Faibussowitsch { 2952ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2953b3a35320SAlex Lindsay /* Save the nonzero states of the component matrices because those are what are used to determine 2954b3a35320SAlex Lindsay the nonzero state of mat */ 2955b3a35320SAlex Lindsay PetscObjectState diagstate = b->A->nonzerostate, offdiagstate = b->B->nonzerostate; 2956846b4da1SFande Kong 2957846b4da1SFande Kong PetscFunctionBegin; 2958846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2961eb14dd14SAlex Lindsay if (B->assembled || B->was_assembled) PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE)); 2962eb14dd14SAlex Lindsay else { 2963846b4da1SFande Kong #if defined(PETSC_USE_CTABLE) 2964eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2965846b4da1SFande Kong #else 29669566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2967846b4da1SFande Kong #endif 29689566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 29699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 2970eb14dd14SAlex Lindsay } 29719566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2972846b4da1SFande Kong 29739566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->A)); 29749566063dSJacob Faibussowitsch PetscCall(MatResetPreallocation(b->B)); 2975846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2976846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2977846b4da1SFande Kong B->assembled = PETSC_FALSE; 2978b3a35320SAlex Lindsay b->A->nonzerostate = ++diagstate, b->B->nonzerostate = ++offdiagstate; 2979b3a35320SAlex Lindsay /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */ 2980b3a35320SAlex Lindsay PetscCall(PetscObjectStateIncrease((PetscObject)B)); 29813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2982846b4da1SFande Kong } 2983846b4da1SFande Kong 2984d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2985d71ae5a4SJacob Faibussowitsch { 2986d6dfbf8fSBarry Smith Mat mat; 2987416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2988d6dfbf8fSBarry Smith 29893a40ed3dSBarry Smith PetscFunctionBegin; 2990f4259b30SLisandro Dalcin *newmat = NULL; 29919566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29939566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29949566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2995273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2996e1b6402fSHong Zhang 2997d5f3da31SBarry Smith mat->factortype = matin->factortype; 2998501880eeSStefano Zampini mat->assembled = matin->assembled; 2999e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 3000d6dfbf8fSBarry Smith 300117699dbbSLois Curfman McInnes a->size = oldmat->size; 300217699dbbSLois Curfman McInnes a->rank = oldmat->rank; 3003e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 3004e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 3005501880eeSStefano Zampini a->rowindices = NULL; 3006501880eeSStefano Zampini a->rowvalues = NULL; 3007bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 3008d6dfbf8fSBarry Smith 30099566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 30109566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3011420957c1SBarry Smith if (matin->hash_active) { 3012420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3013420957c1SBarry Smith } else { 3014420957c1SBarry Smith mat->preallocated = matin->preallocated; 30152ee70a88SLois Curfman McInnes if (oldmat->colmap) { 3016aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3017eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 3018b1fc9764SSatish Balay #else 30199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 30209566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 3021b1fc9764SSatish Balay #endif 3022501880eeSStefano Zampini } else a->colmap = NULL; 30233f41c07dSBarry Smith if (oldmat->garray) { 3024b1d57f15SBarry Smith PetscInt len; 3025d0f46423SBarry Smith len = oldmat->B->cmap->n; 30269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &a->garray)); 30279566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3028501880eeSStefano Zampini } else a->garray = NULL; 3029d6dfbf8fSBarry Smith 30300de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 30310de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 30320de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3033aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3034cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3035cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3036cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3037cff58d65SJunchao Zhang } 30389566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30399566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3040420957c1SBarry Smith } 30419566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30428a729477SBarry Smith *newmat = mat; 30433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30448a729477SBarry Smith } 3045416022c9SBarry Smith 3046d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3047d71ae5a4SJacob Faibussowitsch { 304852f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 304952f91c60SVaclav Hapla 305052f91c60SVaclav Hapla PetscFunctionBegin; 305152f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 305252f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3053c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30549566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30559566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 305752f91c60SVaclav Hapla if (isbinary) { 30589566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 305952f91c60SVaclav Hapla } else if (ishdf5) { 306052f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30619566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 306252f91c60SVaclav Hapla #else 306352f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 306452f91c60SVaclav Hapla #endif 306552f91c60SVaclav Hapla } else { 306698921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 306752f91c60SVaclav Hapla } 30683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 306952f91c60SVaclav Hapla } 307052f91c60SVaclav Hapla 3071d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3072d71ae5a4SJacob Faibussowitsch { 30733ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30743ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30753ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30768fb81238SShri Abhyankar 30778fb81238SShri Abhyankar PetscFunctionBegin; 30789566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30798fb81238SShri Abhyankar 30803ea6fe3dSLisandro Dalcin /* read in matrix header */ 30819566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 308208401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30839371c9d4SSatish Balay M = header[1]; 30849371c9d4SSatish Balay N = header[2]; 30859371c9d4SSatish Balay nz = header[3]; 308608401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 308708401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 308808401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 308908ea439dSMark F. Adams 30903ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30919566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30923ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30933ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30943ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30978fb81238SShri Abhyankar 30983ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30999566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3100aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 31018fb81238SShri Abhyankar 31023ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 31039566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 31049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 31059566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 31069371c9d4SSatish Balay rowidxs[0] = 0; 31079371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 31081690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 3109462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 311008401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 311138b83642SBarry Smith } 311238b83642SBarry Smith 31133ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 31149566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 31159566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 31169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 31173ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 31189566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 31199566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 31209566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 31213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31228fb81238SShri Abhyankar } 31238fb81238SShri Abhyankar 31243782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3125ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3126d71ae5a4SJacob Faibussowitsch { 31274aa3045dSJed Brown IS iscol_local; 3128c5e4d11fSDmitry Karpeev PetscBool isstride; 31299725ddffSPierre Jolivet PetscMPIInt gisstride = 0; 31303782ecc7SHong Zhang 31313782ecc7SHong Zhang PetscFunctionBegin; 31323782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31339566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31343782ecc7SHong Zhang 3135c5e4d11fSDmitry Karpeev if (isstride) { 3136c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31379566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31389566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31399566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 31409725ddffSPierre Jolivet if (mstart == start && mlen - mstart == len) gisstride = 1; 3141c5e4d11fSDmitry Karpeev } 31423782ecc7SHong Zhang 31439725ddffSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3144c5e4d11fSDmitry Karpeev if (gisstride) { 3145c5e4d11fSDmitry Karpeev PetscInt N; 31469566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31479566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31489566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31499566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3150c5e4d11fSDmitry Karpeev } else { 3151c5bfad50SMark F. Adams PetscInt cbs; 31529566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31539566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31549566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3155b79d0421SJed Brown } 31563782ecc7SHong Zhang 31573782ecc7SHong Zhang *isseq = iscol_local; 31583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3159c5e4d11fSDmitry Karpeev } 31608d2139bdSHong Zhang 3161ddfdf956SHong Zhang /* 31629c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31639c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3164ddfdf956SHong Zhang 3165ddfdf956SHong Zhang Input Parameters: 316627430b45SBarry Smith + mat - matrix 316727430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31689c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 316927430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3170ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 317127430b45SBarry Smith 317227430b45SBarry Smith Output Parameters: 317327430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 317427430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 317527430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 317627430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3177ddfdf956SHong Zhang */ 3178835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[]) 3179d71ae5a4SJacob Faibussowitsch { 3180040216a4SHong Zhang Vec x, cmap; 3181040216a4SHong Zhang const PetscInt *is_idx; 3182040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31839c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3184040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3185040216a4SHong Zhang Mat B = a->B; 3186040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3187a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31888b3fa1f7SHong Zhang MPI_Comm comm; 31893a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31903782ecc7SHong Zhang 31913782ecc7SHong Zhang PetscFunctionBegin; 31929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31939566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31948b3fa1f7SHong Zhang 3195ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31969566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31979566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31989566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31999566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 32000a351717SHong Zhang 32019c988bcaSHong Zhang /* Get start indices */ 32029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3203ddfdf956SHong Zhang isstart -= ncols; 32049566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3205040216a4SHong Zhang 32069566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 32079566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 32089566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 32099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3210ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 32118b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3212ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 32139c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 32148b3fa1f7SHong Zhang } 32159566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 32169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 32179566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 32188b3fa1f7SHong Zhang 32199c988bcaSHong Zhang /* Get iscol_d */ 32209566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 32219566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 32229566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3223feb78a15SHong Zhang 32249c988bcaSHong Zhang /* Get isrow_d */ 32259566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3226feb78a15SHong Zhang rstart = mat->rmap->rstart; 32279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 32289566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 32299c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 32309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3231feb78a15SHong Zhang 32329566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32339566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32349566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3235feb78a15SHong Zhang 32369c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32389566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3239ddfdf956SHong Zhang 32409566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 324107250d77SHong Zhang 32429566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32439566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 324464efcef9SHong Zhang 32459c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3246ddfdf956SHong Zhang /* off-process column indices */ 32479c988bcaSHong Zhang count = 0; 32489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3250feb78a15SHong Zhang 32519566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32529566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32538b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3254f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32559c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32561c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32571c645242SHong Zhang count++; 32588b3fa1f7SHong Zhang } 32598b3fa1f7SHong Zhang } 32609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 326207250d77SHong Zhang 32639566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3264b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3265b6d9b4e0SHong Zhang 32669566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32679c988bcaSHong Zhang *garray = cmap1; 32689c988bcaSHong Zhang 32699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32709566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32719566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3273040216a4SHong Zhang } 3274040216a4SHong Zhang 3275b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3276d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3277d71ae5a4SJacob Faibussowitsch { 3278b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32791fd43edeSHong Zhang Mat M = NULL; 32803b00a383SHong Zhang MPI_Comm comm; 3281b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32823b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3283c0c276a7Ssdargavi PetscInt n, count, M_size, N_size; 32843b00a383SHong Zhang 32853b00a383SHong Zhang PetscFunctionBegin; 32869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32873b00a383SHong Zhang 32883b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3289b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32909566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 329128b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32923b00a383SHong Zhang 32939566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 329428b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32953b00a383SHong Zhang 32969566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 329728b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32983b00a383SHong Zhang 3299b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3300b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 33019566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 33029566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 330348a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 33049566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 33059566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 33063b00a383SHong Zhang 33073b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 3308c0c276a7Ssdargavi PetscInt *garray, *garray_compact; 3309b20e2604SHong Zhang PetscInt BsubN; 33103b00a383SHong Zhang 3311b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 33129566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 33133b00a383SHong Zhang 3314b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 33159566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 33169566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 33173b00a383SHong Zhang 3318c0c276a7Ssdargavi // Compact garray so its not of size Bn 3319c0c276a7Ssdargavi PetscCall(ISGetSize(iscol_o, &count)); 3320c0c276a7Ssdargavi PetscCall(PetscMalloc1(count, &garray_compact)); 3321c0c276a7Ssdargavi PetscCall(PetscArraycpy(garray_compact, garray, count)); 3322c0c276a7Ssdargavi 33239c988bcaSHong Zhang /* Create submatrix M */ 3324c0c276a7Ssdargavi PetscCall(ISGetSize(isrow, &M_size)); 3325c0c276a7Ssdargavi PetscCall(ISGetSize(iscol, &N_size)); 3326c0c276a7Ssdargavi PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M)); 33273b00a383SHong Zhang 3328b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3329b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 33307cfce09cSHong Zhang 33319566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3332b20e2604SHong Zhang n = asub->B->cmap->N; 3333b20e2604SHong Zhang if (BsubN > n) { 3334c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33357cfce09cSHong Zhang const PetscInt *idx; 33369c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33379566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33387cfce09cSHong Zhang 33399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33407cfce09cSHong Zhang j = 0; 33419566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3342b20e2604SHong Zhang for (i = 0; i < n; i++) { 33437cfce09cSHong Zhang if (j >= BsubN) break; 33449c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33457cfce09cSHong Zhang 33469c988bcaSHong Zhang if (subgarray[i] == garray[j]) { 33477cfce09cSHong Zhang idx_new[i] = idx[j++]; 334898921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33497cfce09cSHong Zhang } 33509566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33517cfce09cSHong Zhang 33529566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33539566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33547cfce09cSHong Zhang 3355b20e2604SHong Zhang } else if (BsubN < n) { 335698921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 3357b20e2604SHong Zhang } 33587cfce09cSHong Zhang 33599566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3360b20e2604SHong Zhang *submat = M; 33613b00a383SHong Zhang 3362e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33639566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33649566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33653b00a383SHong Zhang 33669566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33679566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33683b00a383SHong Zhang 33699566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33713b00a383SHong Zhang } 33723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33733b00a383SHong Zhang } 33743b00a383SHong Zhang 3375d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3376d71ae5a4SJacob Faibussowitsch { 33771358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33783782ecc7SHong Zhang PetscInt csize; 337918e627e3SHong Zhang PetscInt n, i, j, start, end; 33804a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33813782ecc7SHong Zhang MPI_Comm comm; 33823782ecc7SHong Zhang 33833782ecc7SHong Zhang PetscFunctionBegin; 3384bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3385a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33868f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33879566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3388d5761cdaSHong Zhang if (isrow_d) { 3389d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3390d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3391d5761cdaSHong Zhang } else { 33929566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3393d5761cdaSHong Zhang if (iscol_local) { 3394d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3395d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3396d5761cdaSHong Zhang } 3397d5761cdaSHong Zhang } 33988f69fa7bSHong Zhang } else { 3399e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 340018e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 34019566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 34023782ecc7SHong Zhang if (!n) { 340318e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 34043782ecc7SHong Zhang } else { 34059566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 34069566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3407ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 34088f69fa7bSHong Zhang } 34093782ecc7SHong Zhang 3410e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 341118e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 34129566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 341318e627e3SHong Zhang if (!n) { 341418e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 341518e627e3SHong Zhang } else { 34169566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 34179566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 341818e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 341918e627e3SHong Zhang } 342018e627e3SHong Zhang 34219566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3422462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPIU_BOOL, MPI_LAND, comm)); 342318e627e3SHong Zhang sameRowDist = tsameDist[0]; 342418e627e3SHong Zhang } 342518e627e3SHong Zhang 342618e627e3SHong Zhang if (sameRowDist) { 3427b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 34283b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 34299566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 34303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3431b20e2604SHong Zhang } else { /* sameRowDist */ 34323b00a383SHong Zhang /* isrow has same processor distribution as mat */ 34331358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 34341358a193SHong Zhang PetscBool sorted; 34359566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34369566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34379566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 343808401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34391358a193SHong Zhang 34409566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34411358a193SHong Zhang if (sorted) { 34421358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34439566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34453782ecc7SHong Zhang } 34461358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 344748c0d076SHong Zhang IS iscol_sub; 34489566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 344948c0d076SHong Zhang if (iscol_sub) { 34509566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 345248c0d076SHong Zhang } 34531358a193SHong Zhang } 34541358a193SHong Zhang } 34551358a193SHong Zhang } 34563782ecc7SHong Zhang 3457bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34583782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34599566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 346028b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34613782ecc7SHong Zhang } else { 346248a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34631358a193SHong Zhang } 34643782ecc7SHong Zhang 34659566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34669566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34678f69fa7bSHong Zhang 3468b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34699566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3471b79d0421SJed Brown } 34723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34734aa3045dSJed Brown } 34744aa3045dSJed Brown 3475feb78a15SHong Zhang /*@C 347611a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3477feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3478feb78a15SHong Zhang 3479d083f849SBarry Smith Collective 3480feb78a15SHong Zhang 3481feb78a15SHong Zhang Input Parameters: 3482feb78a15SHong Zhang + comm - MPI communicator 3483c0c276a7Ssdargavi . M - the global row size 3484c0c276a7Ssdargavi . N - the global column size 3485feb78a15SHong Zhang . A - "diagonal" portion of matrix 3486c0c276a7Ssdargavi . B - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray 3487c0c276a7Ssdargavi - garray - either `NULL` or the global index of `B` columns 3488feb78a15SHong Zhang 3489feb78a15SHong Zhang Output Parameter: 34902ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 349127430b45SBarry Smith 3492feb78a15SHong Zhang Level: advanced 3493feb78a15SHong Zhang 3494feb78a15SHong Zhang Notes: 349511a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 349611a5261eSBarry Smith 3497c0c276a7Ssdargavi `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore. 3498feb78a15SHong Zhang 34991cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3500feb78a15SHong Zhang @*/ 3501c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat) 3502d71ae5a4SJacob Faibussowitsch { 3503c0c276a7Ssdargavi PetscInt m, n; 35044ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3505feb78a15SHong Zhang 3506feb78a15SHong Zhang PetscFunctionBegin; 35079566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35089566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 350908401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 3510*58b7e2c1SStefano Zampini PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3511feb78a15SHong Zhang 3512c0c276a7Ssdargavi PetscCall(MatSetSizes(*mat, m, n, M, N)); 35134ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 35144ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 35154ab4d6f4SRichard Tran Mills PetscCall(MatSetType(*mat, mpi_mat_type)); 35164ab4d6f4SRichard Tran Mills 3517*58b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(*mat, A->rmap->bs, A->cmap->bs)); 3518feb78a15SHong Zhang 35199566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 35209566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 3521c0c276a7Ssdargavi PetscCall(MatSetMPIAIJWithSplitSeqAIJ(*mat, A, B, garray)); 3522c0c276a7Ssdargavi PetscFunctionReturn(PETSC_SUCCESS); 3523feb78a15SHong Zhang } 3524feb78a15SHong Zhang 3525c0c276a7Ssdargavi /* 3526c0c276a7Ssdargavi MatSetMPIAIJWithSplitSeqAIJ - Set the diag and offdiag matrices of a `MATMPIAIJ` matrix. 3527c0c276a7Ssdargavi It is similar to `MatCreateMPIAIJWithSplitArrays()`. This routine allows passing in 3528c0c276a7Ssdargavi B with local indices and the correct size, along with the accompanying 3529c0c276a7Ssdargavi garray, hence skipping compactification 3530d5761cdaSHong Zhang 3531c0c276a7Ssdargavi Collective 3532d5761cdaSHong Zhang 3533c0c276a7Ssdargavi Input Parameters: 3534c0c276a7Ssdargavi + mat - the MATMPIAIJ matrix, which should have its type and layout set, but should not have its diag, offdiag matrices set 3535c0c276a7Ssdargavi . A - the diag matrix using local col ids 3536c0c276a7Ssdargavi . B - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray 3537c0c276a7Ssdargavi - garray - either `NULL` or the global index of `B` columns 3538d5761cdaSHong Zhang 3539c0c276a7Ssdargavi Output Parameter: 3540c0c276a7Ssdargavi . mat - the updated `MATMPIAIJ` matrix 3541feb78a15SHong Zhang 3542c0c276a7Ssdargavi Level: advanced 3543c0c276a7Ssdargavi 3544c0c276a7Ssdargavi Notes: 3545c0c276a7Ssdargavi See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 3546c0c276a7Ssdargavi 3547c0c276a7Ssdargavi `A` and `B` become part of output mat. The user cannot use `A` and `B` anymore. 3548c0c276a7Ssdargavi 3549c0c276a7Ssdargavi .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3550c0c276a7Ssdargavi */ 3551c0c276a7Ssdargavi PETSC_INTERN PetscErrorCode MatSetMPIAIJWithSplitSeqAIJ(Mat mat, Mat A, Mat B, PetscInt *garray) 3552c0c276a7Ssdargavi { 3553c0c276a7Ssdargavi PetscFunctionBegin; 3554c0c276a7Ssdargavi Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 3555c0c276a7Ssdargavi PetscInt m, n, M, N, Am, An, Bm, Bn; 3556c0c276a7Ssdargavi 3557c0c276a7Ssdargavi PetscCall(MatGetSize(mat, &M, &N)); 3558c0c276a7Ssdargavi PetscCall(MatGetLocalSize(mat, &m, &n)); 3559c0c276a7Ssdargavi PetscCall(MatGetLocalSize(A, &Am, &An)); 3560c0c276a7Ssdargavi PetscCall(MatGetLocalSize(B, &Bm, &Bn)); 3561c0c276a7Ssdargavi 3562c0c276a7Ssdargavi PetscCheck(m == Am && m == Bm, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of rows do not match"); 3563c0c276a7Ssdargavi PetscCheck(n == An, PETSC_COMM_SELF, PETSC_ERR_PLIB, "local number of columns do not match"); 3564c0c276a7Ssdargavi PetscCheck(!mpiaij->A && !mpiaij->B, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A, B of the MPIAIJ matrix are not empty"); 3565c0c276a7Ssdargavi mpiaij->A = A; 3566c0c276a7Ssdargavi mpiaij->B = B; 3567c0c276a7Ssdargavi mpiaij->garray = garray; 3568c0c276a7Ssdargavi 3569c0c276a7Ssdargavi mat->preallocated = PETSC_TRUE; 3570c0c276a7Ssdargavi mat->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 3571c0c276a7Ssdargavi 3572c0c276a7Ssdargavi PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3573c0c276a7Ssdargavi PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 3574c0c276a7Ssdargavi /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 3575c0c276a7Ssdargavi also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced 3576c0c276a7Ssdargavi */ 3577c0c276a7Ssdargavi PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 3578c0c276a7Ssdargavi PetscCall(MatSetOption(mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 3579c0c276a7Ssdargavi PetscCall(MatSetOption(mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 35803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3581feb78a15SHong Zhang } 3582feb78a15SHong Zhang 3583ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35844aa3045dSJed Brown 3585d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3586d71ae5a4SJacob Faibussowitsch { 358798b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 358885f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 358998b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35901fd43edeSHong Zhang Mat M, Msub, B = a->B; 359198b658c4SHong Zhang MatScalar *aa; 359200e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3593a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 359498b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 359598b658c4SHong Zhang IS iscol_sub, iscmap; 359698b658c4SHong Zhang const PetscInt *is_idx, *cmap; 359718e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3598a31a438cSHong Zhang MPI_Comm comm; 35997e2c5f70SBarry Smith 3600a0ff6018SBarry Smith PetscFunctionBegin; 36019566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3602d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 36039566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 360428b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 36059566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3606d5761cdaSHong Zhang 36079566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 360828b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3609d5761cdaSHong Zhang 36109566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 361128b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3612d5761cdaSHong Zhang 36139566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3614d5761cdaSHong Zhang 3615d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 36163b00a383SHong Zhang PetscBool flg; 36173b00a383SHong Zhang 36189566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 36199566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3620bcae8d28SHong Zhang 36213b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3622366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 36239566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3624366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3625462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3626366a327dSHong Zhang if (allcolumns) { 3627366a327dSHong Zhang iscol_sub = iscol_local; 36289566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 36299566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3630366a327dSHong Zhang 36313b00a383SHong Zhang } else { 36321358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3633244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 36349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 36359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 36369566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 36378d2139bdSHong Zhang count = 0; 3638a31a438cSHong Zhang k = 0; 3639a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3640a31a438cSHong Zhang j = is_idx[i]; 3641a31a438cSHong Zhang if (j >= cstart && j < cend) { 3642a31a438cSHong Zhang /* diagonal part of mat */ 36438d2139bdSHong Zhang idx[count] = j; 3644366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 36454a3daf6eSHong Zhang } else if (Bn) { 3646a31a438cSHong Zhang /* off-diagonal part of mat */ 3647a31a438cSHong Zhang if (j == garray[k]) { 36488d2139bdSHong Zhang idx[count] = j; 3649a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3650a31a438cSHong Zhang } else if (j > garray[k]) { 3651a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3652a31a438cSHong Zhang if (j == garray[k]) { 3653a31a438cSHong Zhang idx[count] = j; 3654a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 36558d2139bdSHong Zhang } 36568d2139bdSHong Zhang } 36578d2139bdSHong Zhang } 36588d2139bdSHong Zhang } 36599566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 36608d2139bdSHong Zhang 36619566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 36629566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36639566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3664b6d9b4e0SHong Zhang 36659566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3666a31a438cSHong Zhang } 36678b3fa1f7SHong Zhang 36683b00a383SHong Zhang /* (3) Create sequential Msub */ 36699566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3670d5761cdaSHong Zhang } 36718d2139bdSHong Zhang 36729566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 367357508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Msub->data; 367498b658c4SHong Zhang ii = aij->i; 36759566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3676a0ff6018SBarry Smith 3677a0ff6018SBarry Smith /* 3678a0ff6018SBarry Smith m - number of local rows 3679a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3680a0ff6018SBarry Smith rstart - first row in new global matrix generated 3681a0ff6018SBarry Smith */ 36829566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 368398b658c4SHong Zhang 36843b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36853b00a383SHong Zhang /* (4) Create parallel newmat */ 368698b658c4SHong Zhang PetscMPIInt rank, size; 3687bcae8d28SHong Zhang PetscInt csize; 368898b658c4SHong Zhang 36899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 369100e6dbe6SBarry Smith 3692a0ff6018SBarry Smith /* 369300e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 369400e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3695a0ff6018SBarry Smith */ 369600e6dbe6SBarry Smith 369700e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36989566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36996a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 37009566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3701a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3702e2c4fddaSBarry Smith nlocal = m; 37036a6a5d1dSBarry Smith } else { 3704a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3705ab50ec6bSBarry Smith } 3706ab50ec6bSBarry Smith } else { 37076a6a5d1dSBarry Smith nlocal = csize; 37086a6a5d1dSBarry Smith } 37099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 371000e6dbe6SBarry Smith rstart = rend - nlocal; 3711aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 371200e6dbe6SBarry Smith 371300e6dbe6SBarry Smith /* next, compute all the lengths */ 371498b658c4SHong Zhang jj = aij->j; 37159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 371600e6dbe6SBarry Smith olens = dlens + m; 371700e6dbe6SBarry Smith for (i = 0; i < m; i++) { 371800e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 371900e6dbe6SBarry Smith olen = 0; 372000e6dbe6SBarry Smith dlen = 0; 372100e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 372215b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 372300e6dbe6SBarry Smith else dlen++; 372400e6dbe6SBarry Smith jj++; 372500e6dbe6SBarry Smith } 372600e6dbe6SBarry Smith olens[i] = olen; 372700e6dbe6SBarry Smith dlens[i] = dlen; 372800e6dbe6SBarry Smith } 3729b6d9b4e0SHong Zhang 37309566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 37319566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 373298b658c4SHong Zhang 37339566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 37349566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 37359566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 37369566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 37379566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 37389566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3739d5761cdaSHong Zhang 3740d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3741a0ff6018SBarry Smith M = *newmat; 37429566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 374308401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 37449566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3745c48de900SBarry Smith /* 3746c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3747c48de900SBarry Smith rather than the slower MatSetValues(). 3748c48de900SBarry Smith */ 3749c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3750c48de900SBarry Smith M->assembled = PETSC_FALSE; 3751a0ff6018SBarry Smith } 3752548ecf4dSHong Zhang 37533b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 37549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 37559566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 375698b658c4SHong Zhang 375798b658c4SHong Zhang jj = aij->j; 37589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3759a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3760a0ff6018SBarry Smith row = rstart + i; 376100e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 376215b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37639566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37649371c9d4SSatish Balay jj += nz; 37659371c9d4SSatish Balay aa += nz; 3766a0ff6018SBarry Smith } 37679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37689566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3769a0ff6018SBarry Smith 37709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3772fee21e36SBarry Smith 37739566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 377498b658c4SHong Zhang 377598b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3776fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37773b00a383SHong Zhang *newmat = M; 3778f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37799566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 378098b658c4SHong Zhang 3781f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37829566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 378398b658c4SHong Zhang 3784f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37859566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3786bcae8d28SHong Zhang 3787bcae8d28SHong Zhang if (iscol_local) { 3788f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37899566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3790bcae8d28SHong Zhang } 379198b658c4SHong Zhang } 37923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3793a0ff6018SBarry Smith } 3794273d9f13SBarry Smith 3795df40acb1SHong Zhang /* 3796df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3797df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3798df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3799df40acb1SHong Zhang 380011a5261eSBarry Smith This requires a sequential iscol with all indices. 3801df40acb1SHong Zhang */ 3802d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3803d71ae5a4SJacob Faibussowitsch { 3804df40acb1SHong Zhang PetscMPIInt rank, size; 3805df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3806df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3807df40acb1SHong Zhang Mat M, Mreuse; 380898b658c4SHong Zhang MatScalar *aa, *vwork; 3809df40acb1SHong Zhang MPI_Comm comm; 3810df40acb1SHong Zhang Mat_SeqAIJ *aij; 38110b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3812df40acb1SHong Zhang 3813df40acb1SHong Zhang PetscFunctionBegin; 38149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 38159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 38169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3817df40acb1SHong Zhang 38180b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 38199566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 38209566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 38210b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 3822462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 38230b27a90eSHong Zhang 3824df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 38259566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 382628b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 38279566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3828df40acb1SHong Zhang } else { 38299566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3830df40acb1SHong Zhang } 3831df40acb1SHong Zhang 3832df40acb1SHong Zhang /* 3833df40acb1SHong Zhang m - number of local rows 3834df40acb1SHong Zhang n - number of columns (same on all processors) 3835df40acb1SHong Zhang rstart - first row in new global matrix generated 3836df40acb1SHong Zhang */ 38379566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 38389566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3839df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 384057508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3841df40acb1SHong Zhang ii = aij->i; 3842df40acb1SHong Zhang jj = aij->j; 3843df40acb1SHong Zhang 3844df40acb1SHong Zhang /* 3845df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3846df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3847df40acb1SHong Zhang */ 3848df40acb1SHong Zhang 3849df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3850df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 38519566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3852df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3853df40acb1SHong Zhang nlocal = m; 3854df40acb1SHong Zhang } else { 3855df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3856df40acb1SHong Zhang } 3857df40acb1SHong Zhang } else { 3858df40acb1SHong Zhang nlocal = csize; 3859df40acb1SHong Zhang } 38609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3861df40acb1SHong Zhang rstart = rend - nlocal; 3862aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3863df40acb1SHong Zhang 3864df40acb1SHong Zhang /* next, compute all the lengths */ 38659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3866df40acb1SHong Zhang olens = dlens + m; 3867df40acb1SHong Zhang for (i = 0; i < m; i++) { 3868df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3869df40acb1SHong Zhang olen = 0; 3870df40acb1SHong Zhang dlen = 0; 3871df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3872df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3873df40acb1SHong Zhang else dlen++; 3874df40acb1SHong Zhang jj++; 3875df40acb1SHong Zhang } 3876df40acb1SHong Zhang olens[i] = olen; 3877df40acb1SHong Zhang dlens[i] = dlen; 3878df40acb1SHong Zhang } 38799566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38809566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38819566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38829566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38839566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38849566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3885df40acb1SHong Zhang } else { 3886df40acb1SHong Zhang PetscInt ml, nl; 3887df40acb1SHong Zhang 3888df40acb1SHong Zhang M = *newmat; 38899566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 389008401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38919566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3892df40acb1SHong Zhang /* 3893df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3894df40acb1SHong Zhang rather than the slower MatSetValues(). 3895df40acb1SHong Zhang */ 3896df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3897df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3898df40acb1SHong Zhang } 38999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 390057508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3901df40acb1SHong Zhang ii = aij->i; 3902df40acb1SHong Zhang jj = aij->j; 39032e5835c6SStefano Zampini 39042e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 39059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3906df40acb1SHong Zhang for (i = 0; i < m; i++) { 3907df40acb1SHong Zhang row = rstart + i; 3908df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 39099371c9d4SSatish Balay cwork = jj; 39108e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 39119371c9d4SSatish Balay vwork = aa; 39128e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 39139566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3914df40acb1SHong Zhang } 39159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3916df40acb1SHong Zhang 39179566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 39189566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3919df40acb1SHong Zhang *newmat = M; 3920df40acb1SHong Zhang 3921df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3922df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 39239566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 39249566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3925df40acb1SHong Zhang } 39263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3927df40acb1SHong Zhang } 3928df40acb1SHong Zhang 3929ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3930d71ae5a4SJacob Faibussowitsch { 39316a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 39329f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3933ccd8e176SBarry Smith const PetscInt *JJ; 3934eeb24464SBarry Smith PetscBool nooffprocentries; 39356a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3936ccd8e176SBarry Smith 3937ccd8e176SBarry Smith PetscFunctionBegin; 39389566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 39399566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3940d0f46423SBarry Smith m = B->rmap->n; 3941d0f46423SBarry Smith cstart = B->cmap->rstart; 3942d0f46423SBarry Smith cend = B->cmap->rend; 3943d0f46423SBarry Smith rstart = B->rmap->rstart; 39449f0612e4SBarry Smith irstart = Ii[0]; 3945899cda47SBarry Smith 39469566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3947ccd8e176SBarry Smith 394876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 39498f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3950ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 39519f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 395208401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 395308401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 395408401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3955ecc77c7aSBarry Smith } 395676bd3646SJed Brown } 3957ecc77c7aSBarry Smith 39588f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3959b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 39609f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3961ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3962ccd8e176SBarry Smith d = 0; 39630daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39640daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3965ccd8e176SBarry Smith } 3966ccd8e176SBarry Smith d_nnz[i] = d; 3967ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3968ccd8e176SBarry Smith } 39699566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39709566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3971ccd8e176SBarry Smith 39728f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3973ccd8e176SBarry Smith ii = i + rstart; 39749f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3975ccd8e176SBarry Smith } 3976eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3977eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39789566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39799566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3980eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3981ccd8e176SBarry Smith 39826a3d2595SBarry Smith /* count number of entries below block diagonal */ 39836a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39846a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39856a3d2595SBarry Smith Aij->ld = ld; 39866a3d2595SBarry Smith for (i = 0; i < m; i++) { 39876a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39886a3d2595SBarry Smith j = 0; 3989ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39906a3d2595SBarry Smith ld[i] = j; 3991720a2405SPierre Jolivet if (J) J += nnz; 39926a3d2595SBarry Smith } 39936a3d2595SBarry Smith 39949566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3996ccd8e176SBarry Smith } 3997ccd8e176SBarry Smith 39981eea217eSSatish Balay /*@ 399911a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 4000ccd8e176SBarry Smith (the default parallel PETSc format). 4001ccd8e176SBarry Smith 4002d083f849SBarry Smith Collective 4003ccd8e176SBarry Smith 4004ccd8e176SBarry Smith Input Parameters: 4005a1661176SMatthew Knepley + B - the matrix 4006d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 4007d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 4008ccd8e176SBarry Smith - v - optional values in the matrix 4009ccd8e176SBarry Smith 4010ccd8e176SBarry Smith Level: developer 4011ccd8e176SBarry Smith 401212251496SSatish Balay Notes: 40132ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 40142ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 401511a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 401612251496SSatish Balay 40172ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 401812251496SSatish Balay 4019a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 4020a4bd8bc0SBarry Smith 4021a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 4022a4bd8bc0SBarry Smith 4023a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 4024a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4025a4bd8bc0SBarry Smith 402612251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 402712251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 4028c5e4d11fSDmitry Karpeev as shown 402927430b45SBarry Smith .vb 403027430b45SBarry Smith 1 0 0 403127430b45SBarry Smith 2 0 3 P0 403227430b45SBarry Smith ------- 403327430b45SBarry Smith 4 5 6 P1 403427430b45SBarry Smith 403527430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 403627430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 403727430b45SBarry Smith j = {0,0,2} [size = 3] 403827430b45SBarry Smith v = {1,2,3} [size = 3] 403927430b45SBarry Smith 404027430b45SBarry Smith Process1 [P1] rows_owned=[2] 404127430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 404227430b45SBarry Smith j = {0,1,2} [size = 3] 404327430b45SBarry Smith v = {4,5,6} [size = 3] 404427430b45SBarry Smith .ve 404512251496SSatish Balay 4046fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 4047a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4048ccd8e176SBarry Smith @*/ 4049d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 4050d71ae5a4SJacob Faibussowitsch { 4051ccd8e176SBarry Smith PetscFunctionBegin; 4052cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 40533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4054ccd8e176SBarry Smith } 4055ccd8e176SBarry Smith 40565d83a8b1SBarry Smith /*@ 405711a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 4058273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4059273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 406020f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4061273d9f13SBarry Smith 4062d083f849SBarry Smith Collective 4063273d9f13SBarry Smith 4064273d9f13SBarry Smith Input Parameters: 40651c4f3114SJed Brown + B - the matrix 4066273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4067273d9f13SBarry Smith (same value is used for all local rows) 4068273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4069273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40702ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4071273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40723287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40733287b5eaSJed Brown the diagonal entry even if it is zero. 4074273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4075273d9f13SBarry Smith submatrix (same value is used for all local rows). 4076273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4077273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40782ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4079273d9f13SBarry Smith structure. The size of this array is equal to the number 4080273d9f13SBarry Smith of local rows, i.e 'm'. 4081273d9f13SBarry Smith 40822920cce0SJacob Faibussowitsch Example Usage: 408327430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 408427430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 408527430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 408627430b45SBarry Smith as follows 408727430b45SBarry Smith 408827430b45SBarry Smith .vb 408927430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 409027430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 409127430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 409227430b45SBarry Smith ------------------------------------- 409327430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 409427430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 409527430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 409627430b45SBarry Smith ------------------------------------- 409727430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 409827430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 409927430b45SBarry Smith .ve 410027430b45SBarry Smith 410127430b45SBarry Smith This can be represented as a collection of submatrices as 410227430b45SBarry Smith .vb 410327430b45SBarry Smith A B C 410427430b45SBarry Smith D E F 410527430b45SBarry Smith G H I 410627430b45SBarry Smith .ve 410727430b45SBarry Smith 410827430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 410927430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 411027430b45SBarry Smith 411127430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 411227430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 411327430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 411427430b45SBarry Smith 411527430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 411627430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 411727430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 411827430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 411927430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 41205163b989SNuno Nobre matrix, and [DF] as another `MATSEQAIJ` matrix. 412127430b45SBarry Smith 412220f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 41235163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 41245163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 41255163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 41265163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 412720f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 412827430b45SBarry Smith .vb 412927430b45SBarry Smith proc0 dnz = 2, o_nz = 2 413027430b45SBarry Smith proc1 dnz = 3, o_nz = 2 413127430b45SBarry Smith proc2 dnz = 1, o_nz = 4 413227430b45SBarry Smith .ve 413320f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 413427430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 413527430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 413627430b45SBarry Smith 34 values. 413727430b45SBarry Smith 413820f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 413927430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 414020f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 414127430b45SBarry Smith .vb 414227430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 414327430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 414427430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 414527430b45SBarry Smith .ve 414627430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 414727430b45SBarry Smith hence pre-allocation is perfect. 414827430b45SBarry Smith 414927430b45SBarry Smith Level: intermediate 415027430b45SBarry Smith 415127430b45SBarry Smith Notes: 415249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 415349a6f317SBarry Smith 415427430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 41550598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4156651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4157273d9f13SBarry Smith 4158273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4159273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4160273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4161273d9f13SBarry Smith 4162273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4163a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4164a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4165a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4166a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4167a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4168a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4169a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4170a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4171273d9f13SBarry Smith 41722ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4173273d9f13SBarry Smith 417427430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4175aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 417627430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4177aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4178aa95bbe8SBarry Smith 41791cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4180a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4181273d9f13SBarry Smith @*/ 4182d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4183d71ae5a4SJacob Faibussowitsch { 4184273d9f13SBarry Smith PetscFunctionBegin; 41856ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41866ba663aaSJed Brown PetscValidType(B, 1); 4187cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4189273d9f13SBarry Smith } 4190273d9f13SBarry Smith 419158d36128SBarry Smith /*@ 419211a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41938f8f2f0dSBarry Smith CSR format for the local rows. 41942fb0ec9aSBarry Smith 4195d083f849SBarry Smith Collective 41962fb0ec9aSBarry Smith 41972fb0ec9aSBarry Smith Input Parameters: 41982fb0ec9aSBarry Smith + comm - MPI communicator 419911a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42002fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4201d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4202d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4203d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4204d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 42055693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 42065693b835SJunchao Zhang . j - global column indices 4207f1f2ae84SBarry Smith - a - optional matrix values 42082fb0ec9aSBarry Smith 42092fb0ec9aSBarry Smith Output Parameter: 42102fb0ec9aSBarry Smith . mat - the matrix 421103bfb495SBarry Smith 42122fb0ec9aSBarry Smith Level: intermediate 42132fb0ec9aSBarry Smith 42142fb0ec9aSBarry Smith Notes: 42152ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4216d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4217d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 42182fb0ec9aSBarry Smith 42192ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 422012251496SSatish Balay 42215693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4222a4bd8bc0SBarry Smith 42235693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4224a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4225a4bd8bc0SBarry Smith 422612251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4227d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4228c5e4d11fSDmitry Karpeev as shown 42292ef1f0ffSBarry Smith .vb 42302ef1f0ffSBarry Smith 1 0 0 42312ef1f0ffSBarry Smith 2 0 3 P0 42322ef1f0ffSBarry Smith ------- 42332ef1f0ffSBarry Smith 4 5 6 P1 42348f8f2f0dSBarry Smith 42352ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 42362ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 42372ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 42382ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 42392fb0ec9aSBarry Smith 42402ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 42412ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 42422ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 42432ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 42442ef1f0ffSBarry Smith .ve 42452ef1f0ffSBarry Smith 4246d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 42475693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42482fb0ec9aSBarry Smith @*/ 4249d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4250d71ae5a4SJacob Faibussowitsch { 42512fb0ec9aSBarry Smith PetscFunctionBegin; 425208401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 425308401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 42549566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 42559566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 42569566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 42579566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 42589566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 42593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42602fb0ec9aSBarry Smith } 42612fb0ec9aSBarry Smith 42628f8f2f0dSBarry Smith /*@ 426311a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42642ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42652ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42666a3d2595SBarry Smith 42676a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42688f8f2f0dSBarry Smith 42698f8f2f0dSBarry Smith Collective 42708f8f2f0dSBarry Smith 42718f8f2f0dSBarry Smith Input Parameters: 42728f8f2f0dSBarry Smith + mat - the matrix 427311a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42748f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 427511a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42768f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 427711a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 427811a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42798f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42808f8f2f0dSBarry Smith . J - column indices 42818f8f2f0dSBarry Smith - v - matrix values 42828f8f2f0dSBarry Smith 42832ef1f0ffSBarry Smith Level: deprecated 42848f8f2f0dSBarry Smith 42851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4286a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42878f8f2f0dSBarry Smith @*/ 4288d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4289d71ae5a4SJacob Faibussowitsch { 42906a3d2595SBarry Smith PetscInt nnz, i; 42918f8f2f0dSBarry Smith PetscBool nooffprocentries; 42928f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4293fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4294fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42958f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42966a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42976a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42988f8f2f0dSBarry Smith 42998f8f2f0dSBarry Smith PetscFunctionBegin; 4300aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 430108401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 430208401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 430308401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 43048f8f2f0dSBarry Smith 43059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43069566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43078f8f2f0dSBarry Smith 43088f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 43094c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 43104c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 43114c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 43124c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 43134c17f1ccSBarry Smith } 43144c17f1ccSBarry Smith } 43158f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 43168f8f2f0dSBarry Smith Iii = Ii[i]; 43178f8f2f0dSBarry Smith ldi = ld[i]; 43188f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 43199566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 43209566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43228f8f2f0dSBarry Smith ad += md; 43238f8f2f0dSBarry Smith ao += nnz - md; 43248f8f2f0dSBarry Smith } 43258f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 43268f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 43279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43299566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43309566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43319566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43329566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43339566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43348f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 43353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43368f8f2f0dSBarry Smith } 43378f8f2f0dSBarry Smith 43386a3d2595SBarry Smith /*@ 433911a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 43406a3d2595SBarry Smith 43416a3d2595SBarry Smith Collective 43426a3d2595SBarry Smith 43436a3d2595SBarry Smith Input Parameters: 43446a3d2595SBarry Smith + mat - the matrix 43456a3d2595SBarry Smith - v - matrix values, stored by row 43466a3d2595SBarry Smith 43476a3d2595SBarry Smith Level: intermediate 43486a3d2595SBarry Smith 4349a4bd8bc0SBarry Smith Notes: 43506a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 43516a3d2595SBarry Smith 4352a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4353a4bd8bc0SBarry Smith 43541cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4355a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 43566a3d2595SBarry Smith @*/ 4357d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4358d71ae5a4SJacob Faibussowitsch { 43596a3d2595SBarry Smith PetscInt nnz, i, m; 43606a3d2595SBarry Smith PetscBool nooffprocentries; 43616a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 43626a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43636a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43646a3d2595SBarry Smith PetscScalar *ad, *ao; 43656a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43666a3d2595SBarry Smith PetscInt ldi, Iii, md; 43676a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43686a3d2595SBarry Smith 43696a3d2595SBarry Smith PetscFunctionBegin; 43706a3d2595SBarry Smith m = mat->rmap->n; 43716a3d2595SBarry Smith 43726a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43736a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43746a3d2595SBarry Smith Iii = 0; 43756a3d2595SBarry Smith for (i = 0; i < m; i++) { 43766a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43776a3d2595SBarry Smith ldi = ld[i]; 43786a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43796a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43806a3d2595SBarry Smith ad += md; 4381810441c8SPierre Jolivet if (ao) { 4382810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4383810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43846a3d2595SBarry Smith ao += nnz - md; 4385810441c8SPierre Jolivet } 43866a3d2595SBarry Smith Iii += nnz; 43876a3d2595SBarry Smith } 43886a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43896a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43906a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43916a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43926a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43936a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43946a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43956a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43966a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43976a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43996a3d2595SBarry Smith } 44006a3d2595SBarry Smith 44015d83a8b1SBarry Smith /*@ 440211a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4403273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4404273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 44052ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4406273d9f13SBarry Smith 4407d083f849SBarry Smith Collective 4408273d9f13SBarry Smith 4409273d9f13SBarry Smith Input Parameters: 4410273d9f13SBarry Smith + comm - MPI communicator 441111a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4412273d9f13SBarry Smith This value should be the same as the local size used in creating the 4413273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4414273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 441545f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4416273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 441711a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 441811a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4419273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4420273d9f13SBarry Smith (same value is used for all local rows) 4421273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4422273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 44232ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4424273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4425273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4426273d9f13SBarry Smith submatrix (same value is used for all local rows). 4427273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4428273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 44292ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4430273d9f13SBarry Smith structure. The size of this array is equal to the number 4431273d9f13SBarry Smith of local rows, i.e 'm'. 4432273d9f13SBarry Smith 4433273d9f13SBarry Smith Output Parameter: 4434273d9f13SBarry Smith . A - the matrix 4435273d9f13SBarry Smith 443627430b45SBarry Smith Options Database Keys: 443727430b45SBarry Smith + -mat_no_inode - Do not use inodes 443827430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 443927430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4440727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4441727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 444227430b45SBarry Smith 44432ef1f0ffSBarry Smith Level: intermediate 44442ef1f0ffSBarry Smith 444527430b45SBarry Smith Notes: 444677433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4447f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 444811a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4449175b88e8SBarry Smith 445049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 445149a6f317SBarry Smith 44522ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 44532ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4454273d9f13SBarry Smith storage requirements for this matrix. 4455273d9f13SBarry Smith 445611a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4457273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4458273d9f13SBarry Smith that argument. 4459273d9f13SBarry Smith 4460727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4461727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4462727bdf9bSBarry Smith 4463273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4464273d9f13SBarry Smith (possibly both). 4465273d9f13SBarry Smith 446633a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4467727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4468727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4469727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 447033a7c187SSatish Balay values corresponding to [m x N] submatrix. 4471273d9f13SBarry Smith 447233a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 447333a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4474df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 447533a7c187SSatish Balay 447633a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 447733a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 447833a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 447933a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 448033a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 448133a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 44820b4b7b1cSBarry Smith illustrates this concept. The two matrices, the DIAGONAL portion and 44830b4b7b1cSBarry Smith the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices. 448433a7c187SSatish Balay 448533a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 448633a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 448733a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 448833a7c187SSatish Balay local matrix (a rectangular submatrix). 4489273d9f13SBarry Smith 44902ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4491273d9f13SBarry Smith 449297d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44932ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4494da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4495da57b5cdSKarl Rupp .vb 44962ef1f0ffSBarry Smith MatCreate(..., &A); 44972ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44982ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44992ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4500da57b5cdSKarl Rupp .ve 450197d05335SKris Buschelman 4502273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4503273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4504273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4505273d9f13SBarry Smith 45062920cce0SJacob Faibussowitsch Example Usage: 4507273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4508273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4509273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4510efc377ccSKarl Rupp as follows 4511273d9f13SBarry Smith 4512273d9f13SBarry Smith .vb 4513273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4514273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4515273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4516273d9f13SBarry Smith ------------------------------------- 4517273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4518273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4519273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4520273d9f13SBarry Smith ------------------------------------- 4521273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4522273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4523273d9f13SBarry Smith .ve 4524273d9f13SBarry Smith 4525da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4526273d9f13SBarry Smith 4527273d9f13SBarry Smith .vb 4528273d9f13SBarry Smith A B C 4529273d9f13SBarry Smith D E F 4530273d9f13SBarry Smith G H I 4531273d9f13SBarry Smith .ve 4532273d9f13SBarry Smith 4533273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4534273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4535273d9f13SBarry Smith 4536273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4537273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4538273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4539273d9f13SBarry Smith 4540273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4541273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4542273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4543273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 454427430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 45455163b989SNuno Nobre matrix, and [DF] as another SeqAIJ matrix. 4546273d9f13SBarry Smith 45472ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 45485163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 45495163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 45505163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 45515163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 45522ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4553273d9f13SBarry Smith .vb 455427430b45SBarry Smith proc0 dnz = 2, o_nz = 2 455527430b45SBarry Smith proc1 dnz = 3, o_nz = 2 455627430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4557273d9f13SBarry Smith .ve 45582ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4559273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4560273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4561273d9f13SBarry Smith 34 values. 4562273d9f13SBarry Smith 45632ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4564a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4565da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4566273d9f13SBarry Smith .vb 456727430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 456827430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 456927430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4570273d9f13SBarry Smith .ve 4571273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4572273d9f13SBarry Smith hence pre-allocation is perfect. 4573273d9f13SBarry Smith 45741cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4575727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4576727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4577273d9f13SBarry Smith @*/ 4578d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4579d71ae5a4SJacob Faibussowitsch { 4580b1d57f15SBarry Smith PetscMPIInt size; 4581273d9f13SBarry Smith 4582273d9f13SBarry Smith PetscFunctionBegin; 45839566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45849566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4586273d9f13SBarry Smith if (size > 1) { 45879566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45889566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4589273d9f13SBarry Smith } else { 45909566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4592273d9f13SBarry Smith } 45933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4594273d9f13SBarry Smith } 4595195d93cdSBarry Smith 4596127ca0efSMatthew Knepley /*@C 45970ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4598127ca0efSMatthew Knepley 45992ef1f0ffSBarry Smith Not Collective 4600127ca0efSMatthew Knepley 4601127ca0efSMatthew Knepley Input Parameter: 460211a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4603127ca0efSMatthew Knepley 4604127ca0efSMatthew Knepley Output Parameters: 460511a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 460611a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 46072ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4608127ca0efSMatthew Knepley 46090ab4885dSBarry Smith Level: intermediate 46100ab4885dSBarry Smith 461111a5261eSBarry Smith Note: 46122ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 46132ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 46142ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4615127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4616127ca0efSMatthew Knepley 4617ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4618127ca0efSMatthew Knepley @*/ 4619d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4620d71ae5a4SJacob Faibussowitsch { 4621195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 462204cf37c7SBarry Smith PetscBool flg; 4623b1d57f15SBarry Smith 4624195d93cdSBarry Smith PetscFunctionBegin; 46259566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 462628b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 462721e72a00SBarry Smith if (Ad) *Ad = a->A; 462821e72a00SBarry Smith if (Ao) *Ao = a->B; 462921e72a00SBarry Smith if (colmap) *colmap = a->garray; 46303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4631195d93cdSBarry Smith } 4632a2243be0SBarry Smith 4633d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4634d71ae5a4SJacob Faibussowitsch { 4635110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 46369b8102ccSHong Zhang PetscInt *indx; 4637110bb6e1SHong Zhang PetscScalar *values; 4638421ddf4dSJunchao Zhang MatType rootType; 46399b8102ccSHong Zhang 46409b8102ccSHong Zhang PetscFunctionBegin; 46419566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4642110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4643110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4644110bb6e1SHong Zhang 464548a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4646a22543b6SHong Zhang /* Check sum(n) = N */ 4647462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 464808401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4649a22543b6SHong Zhang 46509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 46519b8102ccSHong Zhang rstart -= m; 46529b8102ccSHong Zhang 4653d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 46549b8102ccSHong Zhang for (i = 0; i < m; i++) { 46559566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46569566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 46579566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 46589b8102ccSHong Zhang } 46599b8102ccSHong Zhang 46609566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 46619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 46629566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46639566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46649566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46659566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46679566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4668d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46699566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46709b8102ccSHong Zhang } 46719b8102ccSHong Zhang 4672110bb6e1SHong Zhang /* numeric phase */ 46739566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46749b8102ccSHong Zhang for (i = 0; i < m; i++) { 46759566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46769b8102ccSHong Zhang Ii = i + rstart; 46779566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46789566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46799b8102ccSHong Zhang } 46809566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46819566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4683c5d6d63eSBarry Smith } 4684c5d6d63eSBarry Smith 468549abdd8aSBarry Smith static PetscErrorCode MatDestroy_MPIAIJ_SeqsToMPI(void **data) 4686d71ae5a4SJacob Faibussowitsch { 468749abdd8aSBarry Smith Mat_Merge_SeqsToMPI *merge = (Mat_Merge_SeqsToMPI *)*data; 468851a7d1a8SHong Zhang 468951a7d1a8SHong Zhang PetscFunctionBegin; 46903ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46919566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46929566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 46939566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 46949566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 46959566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 46969566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 46979566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 46989566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 46999566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 47009566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 47019566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 47029566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 47039566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 47049566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 47053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 470651a7d1a8SHong Zhang } 470751a7d1a8SHong Zhang 4708c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4709c6db04a5SJed Brown #include <petscbt.h> 47104ebed01fSBarry Smith 4711d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4712d71ae5a4SJacob Faibussowitsch { 4713ce94432eSBarry Smith MPI_Comm comm; 471455d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4715b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 47166497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 47176497c311SBarry Smith PetscMPIInt proc, k; 4718b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 47196497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4720b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 472155d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 472255d1abb9SHong Zhang MPI_Status *status; 4723fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4724dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 472555d1abb9SHong Zhang Mat_Merge_SeqsToMPI *merge; 4726776b82aeSLisandro Dalcin PetscContainer container; 472755d1abb9SHong Zhang 472855d1abb9SHong Zhang PetscFunctionBegin; 47299566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 47309566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47313c2c1871SHong Zhang 47329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 473455d1abb9SHong Zhang 47359566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 473628b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 47379566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&merge)); 47389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4739fff043a9SJunchao Zhang aa = a_a; 4740bf0cc555SLisandro Dalcin 474155d1abb9SHong Zhang bi = merge->bi; 474255d1abb9SHong Zhang bj = merge->bj; 474355d1abb9SHong Zhang buf_ri = merge->buf_ri; 474455d1abb9SHong Zhang buf_rj = merge->buf_rj; 474555d1abb9SHong Zhang 47469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 47477a2fc3feSBarry Smith owners = merge->rowmap->range; 474855d1abb9SHong Zhang len_s = merge->len_s; 474955d1abb9SHong Zhang 475055d1abb9SHong Zhang /* send and recv matrix values */ 47519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 47529566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 475355d1abb9SHong Zhang 47549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 475555d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 475655d1abb9SHong Zhang if (!len_s[proc]) continue; 475755d1abb9SHong Zhang i = owners[proc]; 47586497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 475955d1abb9SHong Zhang k++; 476055d1abb9SHong Zhang } 476155d1abb9SHong Zhang 47629566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47639566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47649566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 476555d1abb9SHong Zhang 47669566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47679566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 476855d1abb9SHong Zhang 476955d1abb9SHong Zhang /* insert mat values of mpimat */ 47709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47719566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 477255d1abb9SHong Zhang 477355d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 477455d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4775f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 477655d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4777a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 477855d1abb9SHong Zhang } 477955d1abb9SHong Zhang 478055d1abb9SHong Zhang /* set values of ba */ 47817a2fc3feSBarry Smith m = merge->rowmap->n; 478255d1abb9SHong Zhang for (i = 0; i < m; i++) { 478355d1abb9SHong Zhang arow = owners[rank] + i; 478455d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 478555d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47869566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 478755d1abb9SHong Zhang 478855d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 478955d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 479055d1abb9SHong Zhang aj = a->j + ai[arow]; 4791fff043a9SJunchao Zhang aa = a_a + ai[arow]; 479255d1abb9SHong Zhang nextaj = 0; 479355d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 479455d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 479555d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 479655d1abb9SHong Zhang } 479755d1abb9SHong Zhang } 479855d1abb9SHong Zhang 479955d1abb9SHong Zhang /* add received vals into ba */ 480055d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 480155d1abb9SHong Zhang /* i-th row */ 480255d1abb9SHong Zhang if (i == *nextrow[k]) { 480355d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4804f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4805f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 480655d1abb9SHong Zhang nextaj = 0; 480755d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 480855d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 480955d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 481055d1abb9SHong Zhang } 481155d1abb9SHong Zhang } 48129371c9d4SSatish Balay nextrow[k]++; 48139371c9d4SSatish Balay nextai[k]++; 481455d1abb9SHong Zhang } 481555d1abb9SHong Zhang } 48169566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 481755d1abb9SHong Zhang } 48189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 48199566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 48209566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 482155d1abb9SHong Zhang 48229566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 48239566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 48249566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 48259566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 48269566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 48273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 482855d1abb9SHong Zhang } 482938f152feSBarry Smith 4830d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4831d71ae5a4SJacob Faibussowitsch { 483255a3bba9SHong Zhang Mat B_mpi; 4833c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4834b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4835b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4836d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 48376497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4838c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4839b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 484055d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 484158cb9c82SHong Zhang MPI_Status *status; 48420298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4843be0fcf8dSHong Zhang PetscBT lnkbt; 484451a7d1a8SHong Zhang Mat_Merge_SeqsToMPI *merge; 4845776b82aeSLisandro Dalcin PetscContainer container; 484602c68681SHong Zhang 4847e5f2cdd8SHong Zhang PetscFunctionBegin; 48489566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 48493c2c1871SHong Zhang 485038f152feSBarry Smith /* make sure it is a PETSc comm */ 48519566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 48529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 48539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 485455d1abb9SHong Zhang 48559566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 48569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4857e5f2cdd8SHong Zhang 48586abd8857SHong Zhang /* determine row ownership */ 48599566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 48609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 48619566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 48629566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 486655d1abb9SHong Zhang 48677a2fc3feSBarry Smith m = merge->rowmap->n; 48687a2fc3feSBarry Smith owners = merge->rowmap->range; 48696abd8857SHong Zhang 48706abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48713e06a4e6SHong Zhang len_s = merge->len_s; 487251a7d1a8SHong Zhang 48732257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4874c2234fe3SHong Zhang merge->nsend = 0; 48756497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 48762257cef7SHong Zhang len_si[proc] = 0; 48773e06a4e6SHong Zhang if (proc == rank) { 48786abd8857SHong Zhang len_s[proc] = 0; 48793e06a4e6SHong Zhang } else { 48806497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 48816497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 48823e06a4e6SHong Zhang } 48833e06a4e6SHong Zhang if (len_s[proc]) { 4884c2234fe3SHong Zhang merge->nsend++; 48852257cef7SHong Zhang nrows = 0; 48862257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48872257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48882257cef7SHong Zhang } 48896497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 48902257cef7SHong Zhang len += len_si[proc]; 4891409913e3SHong Zhang } 489258cb9c82SHong Zhang } 4893409913e3SHong Zhang 48942257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 48959566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 48969566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4897671beff6SHong Zhang 48983e06a4e6SHong Zhang /* post the Irecv of j-structure */ 48999566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 49009566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 490102c68681SHong Zhang 49023e06a4e6SHong Zhang /* post the Isend of j-structure */ 49039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 49043e06a4e6SHong Zhang 49056497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4906409913e3SHong Zhang if (!len_s[proc]) continue; 490702c68681SHong Zhang i = owners[proc]; 49086497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 490951a7d1a8SHong Zhang k++; 491051a7d1a8SHong Zhang } 491151a7d1a8SHong Zhang 49123e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 49139566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 49149566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 491502c68681SHong Zhang 491602c68681SHong Zhang /* send and recv i-structure */ 49179566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 49189566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 491902c68681SHong Zhang 49209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 49213e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 49226497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 492302c68681SHong Zhang if (!len_s[proc]) continue; 49243e06a4e6SHong Zhang /* form outgoing message for i-structure: 49253e06a4e6SHong Zhang buf_si[0]: nrows to be sent 49263e06a4e6SHong Zhang [1:nrows]: row index (global) 49273e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 49283e06a4e6SHong Zhang */ 49292257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 49303e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 49313e06a4e6SHong Zhang buf_si[0] = nrows; 49323e06a4e6SHong Zhang buf_si_i[0] = 0; 49333e06a4e6SHong Zhang nrows = 0; 49343e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 49353e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 49363e06a4e6SHong Zhang if (anzi) { 49373e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 49383e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 49393e06a4e6SHong Zhang nrows++; 49403e06a4e6SHong Zhang } 49413e06a4e6SHong Zhang } 49426497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 494302c68681SHong Zhang k++; 49442257cef7SHong Zhang buf_si += len_si[proc]; 494502c68681SHong Zhang } 49462257cef7SHong Zhang 49479566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 49489566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 494902c68681SHong Zhang 49509566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 495148a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 49523e06a4e6SHong Zhang 49539566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 49549566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 49559566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 49569566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 49579566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 49589566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 49599566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 496058cb9c82SHong Zhang 4961bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 496258cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 496458cb9c82SHong Zhang bi[0] = 0; 496558cb9c82SHong Zhang 4966be0fcf8dSHong Zhang /* create and initialize a linked list */ 4967be0fcf8dSHong Zhang nlnk = N + 1; 49689566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 496958cb9c82SHong Zhang 4970bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4971bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49729566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49732205254eSKarl Rupp 497458cb9c82SHong Zhang current_space = free_space; 497558cb9c82SHong Zhang 4976bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49779566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49781d79065fSBarry Smith 49793e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49802257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49813e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49823e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4983a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49843e06a4e6SHong Zhang } 49852257cef7SHong Zhang 4986d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4987bcc1bcd5SHong Zhang len = 0; 498858cb9c82SHong Zhang for (i = 0; i < m; i++) { 498958cb9c82SHong Zhang bnzi = 0; 499058cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 499158cb9c82SHong Zhang arow = owners[rank] + i; 499258cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 499358cb9c82SHong Zhang aj = a->j + ai[arow]; 49949566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 499558cb9c82SHong Zhang bnzi += nlnk; 499658cb9c82SHong Zhang /* add received col data into lnk */ 499751a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 499855d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 49993e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 50003e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 50019566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 50023e06a4e6SHong Zhang bnzi += nlnk; 50039371c9d4SSatish Balay nextrow[k]++; 50049371c9d4SSatish Balay nextai[k]++; 50053e06a4e6SHong Zhang } 500658cb9c82SHong Zhang } 5007bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 500858cb9c82SHong Zhang 500958cb9c82SHong Zhang /* if free space is not available, make more free space */ 501048a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 501158cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 50129566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 50139566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 5014bcc1bcd5SHong Zhang 501558cb9c82SHong Zhang current_space->array += bnzi; 501658cb9c82SHong Zhang current_space->local_used += bnzi; 501758cb9c82SHong Zhang current_space->local_remaining -= bnzi; 501858cb9c82SHong Zhang 501958cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 502058cb9c82SHong Zhang } 5021bcc1bcd5SHong Zhang 50229566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 5023bcc1bcd5SHong Zhang 50249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[m] + 1, &bj)); 50259566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 50269566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 5027409913e3SHong Zhang 5028bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 50299566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 50309566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 503154b84b50SHong Zhang if (n == PETSC_DECIDE) { 50329566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 503354b84b50SHong Zhang } else { 50349566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 503554b84b50SHong Zhang } 50369566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 50379566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 50389566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 5039d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 50409566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 504158cb9c82SHong Zhang 504290431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 50436abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 5044affca5deSHong Zhang merge->bi = bi; 5045affca5deSHong Zhang merge->bj = bj; 504602c68681SHong Zhang merge->buf_ri = buf_ri; 504702c68681SHong Zhang merge->buf_rj = buf_rj; 50480298fd71SBarry Smith merge->coi = NULL; 50490298fd71SBarry Smith merge->coj = NULL; 50500298fd71SBarry Smith merge->owners_co = NULL; 5051affca5deSHong Zhang 50529566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 5053bf0cc555SLisandro Dalcin 5054affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 50559566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 50569566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 505749abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatDestroy_MPIAIJ_SeqsToMPI)); 50589566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 50599566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 5060affca5deSHong Zhang *mpimat = B_mpi; 506138f152feSBarry Smith 50629566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5064e5f2cdd8SHong Zhang } 506525616d81SHong Zhang 5066cc4c1da9SBarry Smith /*@ 506711a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5068d4036a1aSHong Zhang matrices from each processor 5069d4036a1aSHong Zhang 5070d083f849SBarry Smith Collective 5071d4036a1aSHong Zhang 5072d4036a1aSHong Zhang Input Parameters: 5073d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5074d4036a1aSHong Zhang . seqmat - the input sequential matrices 507511a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 507611a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 507711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5078d4036a1aSHong Zhang 5079d4036a1aSHong Zhang Output Parameter: 5080d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5081d4036a1aSHong Zhang 5082d4036a1aSHong Zhang Level: advanced 5083d4036a1aSHong Zhang 508411a5261eSBarry Smith Note: 5085d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 5086d4036a1aSHong Zhang The input seqmat is included into the container "Mat_Merge_SeqsToMPI", and will be 5087b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 50882ef1f0ffSBarry Smith 50891cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5090d4036a1aSHong Zhang @*/ 5091d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5092d71ae5a4SJacob Faibussowitsch { 50937e63b356SHong Zhang PetscMPIInt size; 509455d1abb9SHong Zhang 509555d1abb9SHong Zhang PetscFunctionBegin; 50969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 50977e63b356SHong Zhang if (size == 1) { 50989566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 50997e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51009566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 51017e63b356SHong Zhang } else { 51029566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 51037e63b356SHong Zhang } 51049566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51067e63b356SHong Zhang } 51079566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 510848a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 51099566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 51109566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 51113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 511255d1abb9SHong Zhang } 51134ebed01fSBarry Smith 5114bc08b0f1SBarry Smith /*@ 51152920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 51168a9c020eSBarry Smith 51178a9c020eSBarry Smith Not Collective 51188a9c020eSBarry Smith 51192fe279fdSBarry Smith Input Parameter: 512020f4b53cSBarry Smith . A - the matrix 51218a9c020eSBarry Smith 51228a9c020eSBarry Smith Output Parameter: 51238a9c020eSBarry Smith . A_loc - the local sequential matrix generated 51248a9c020eSBarry Smith 51258a9c020eSBarry Smith Level: developer 51268a9c020eSBarry Smith 51278a9c020eSBarry Smith Notes: 51282920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 51292920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 51302920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 51312920cce0SJacob Faibussowitsch 513211a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51338a9c020eSBarry Smith 51342920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 51352920cce0SJacob Faibussowitsch 513611a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 51378a9c020eSBarry Smith 51381cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 51398a9c020eSBarry Smith @*/ 5140d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5141d71ae5a4SJacob Faibussowitsch { 51428a9c020eSBarry Smith PetscBool mpi; 51438a9c020eSBarry Smith 51448a9c020eSBarry Smith PetscFunctionBegin; 51458a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 51468a9c020eSBarry Smith if (mpi) { 51478a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 51488a9c020eSBarry Smith } else { 51498a9c020eSBarry Smith *A_loc = A; 51508a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 51518a9c020eSBarry Smith } 51523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 51538a9c020eSBarry Smith } 51548a9c020eSBarry Smith 51558a9c020eSBarry Smith /*@ 51562920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 515725616d81SHong Zhang 515832fba14fSHong Zhang Not Collective 515925616d81SHong Zhang 516025616d81SHong Zhang Input Parameters: 516125616d81SHong Zhang + A - the matrix 516211a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 516325616d81SHong Zhang 516425616d81SHong Zhang Output Parameter: 516525616d81SHong Zhang . A_loc - the local sequential matrix generated 516625616d81SHong Zhang 516725616d81SHong Zhang Level: developer 516825616d81SHong Zhang 516977c65a98SStefano Zampini Notes: 51702920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51712920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51722920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51732920cce0SJacob Faibussowitsch 517411a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51758a9c020eSBarry Smith 51762920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51772920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51782920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51792920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 518077c65a98SStefano Zampini 51811cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 518225616d81SHong Zhang @*/ 5183d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5184d71ae5a4SJacob Faibussowitsch { 518501b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5186b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5187b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5188ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5189ce496241SStefano Zampini PetscScalar *ca, *cam; 519077c65a98SStefano Zampini PetscMPIInt size; 5191d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51925a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 51938661ff28SBarry Smith PetscBool match; 519425616d81SHong Zhang 519525616d81SHong Zhang PetscFunctionBegin; 51969566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 519728b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 51989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 519977c65a98SStefano Zampini if (size == 1) { 520077c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52019566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 520277c65a98SStefano Zampini *A_loc = mpimat->A; 520377c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52049566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 520577c65a98SStefano Zampini } 52063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 520777c65a98SStefano Zampini } 520870a9ba44SHong Zhang 52099566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5210f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5211f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 52129371c9d4SSatish Balay ai = a->i; 52139371c9d4SSatish Balay aj = a->j; 52149371c9d4SSatish Balay bi = b->i; 52159371c9d4SSatish Balay bj = b->j; 52169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 52179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5218ce496241SStefano Zampini aa = aav; 5219ce496241SStefano Zampini ba = bav; 522001b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 52219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5222dea91ad1SHong Zhang ci[0] = 0; 5223ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 52249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 52259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5226dea91ad1SHong Zhang k = 0; 522701b7ae99SHong Zhang for (i = 0; i < am; i++) { 52285a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52295a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 523001b7ae99SHong Zhang /* off-diagonal portion of A */ 52315a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52325a7d977cSHong Zhang col = cmap[*bj]; 52335a7d977cSHong Zhang if (col >= cstart) break; 52349371c9d4SSatish Balay cj[k] = col; 52359371c9d4SSatish Balay bj++; 52365a7d977cSHong Zhang ca[k++] = *ba++; 52375a7d977cSHong Zhang } 52385a7d977cSHong Zhang /* diagonal portion of A */ 52395a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 52405a7d977cSHong Zhang cj[k] = cstart + *aj++; 52415a7d977cSHong Zhang ca[k++] = *aa++; 52425a7d977cSHong Zhang } 52435a7d977cSHong Zhang /* off-diagonal portion of A */ 52445a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 52455a7d977cSHong Zhang cj[k] = cmap[*bj++]; 52465a7d977cSHong Zhang ca[k++] = *ba++; 52475a7d977cSHong Zhang } 524825616d81SHong Zhang } 5249dea91ad1SHong Zhang /* put together the new matrix */ 52509566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5251dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5252dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5253dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5254e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5255e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5256dea91ad1SHong Zhang mat->nonew = 0; 52575a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 52585a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5259fff043a9SJunchao Zhang ci = mat->i; 5260fff043a9SJunchao Zhang cj = mat->j; 52619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 52625a7d977cSHong Zhang for (i = 0; i < am; i++) { 52635a7d977cSHong Zhang /* off-diagonal portion of A */ 52645a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52655a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52665a7d977cSHong Zhang col = cmap[*bj]; 52675a7d977cSHong Zhang if (col >= cstart) break; 52689371c9d4SSatish Balay *cam++ = *ba++; 52699371c9d4SSatish Balay bj++; 52705a7d977cSHong Zhang } 52715a7d977cSHong Zhang /* diagonal portion of A */ 5272ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5273a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52745a7d977cSHong Zhang /* off-diagonal portion of A */ 5275f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52769371c9d4SSatish Balay *cam++ = *ba++; 52779371c9d4SSatish Balay bj++; 5278f33d1a9aSHong Zhang } 52795a7d977cSHong Zhang } 52809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 528198921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52829566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52849566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 528625616d81SHong Zhang } 528725616d81SHong Zhang 5288ed502f03SStefano Zampini /*@ 528911a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52904cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5291ed502f03SStefano Zampini 5292ed502f03SStefano Zampini Not Collective 5293ed502f03SStefano Zampini 5294ed502f03SStefano Zampini Input Parameters: 5295ed502f03SStefano Zampini + A - the matrix 529611a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5297ed502f03SStefano Zampini 5298d8d19677SJose E. Roman Output Parameters: 52992ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5300ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5301ed502f03SStefano Zampini 5302ed502f03SStefano Zampini Level: developer 5303ed502f03SStefano Zampini 530411a5261eSBarry Smith Note: 53052ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 53064cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5307ed502f03SStefano Zampini 53081cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5309ed502f03SStefano Zampini @*/ 5310d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5311d71ae5a4SJacob Faibussowitsch { 5312ed502f03SStefano Zampini Mat Ao, Ad; 5313ed502f03SStefano Zampini const PetscInt *cmap; 5314ed502f03SStefano Zampini PetscMPIInt size; 5315ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5316ed502f03SStefano Zampini 5317ed502f03SStefano Zampini PetscFunctionBegin; 53189566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 53199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5320ed502f03SStefano Zampini if (size == 1) { 5321ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 53229566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5323ed502f03SStefano Zampini *A_loc = Ad; 5324ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53259566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5326ed502f03SStefano Zampini } 53279566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 53283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5329ed502f03SStefano Zampini } 53309566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 53319566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5332ed502f03SStefano Zampini if (f) { 53339566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5334ed502f03SStefano Zampini } else { 5335ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5336ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5337ed502f03SStefano Zampini Mat_SeqAIJ *c; 5338ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5339ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5340ed502f03SStefano Zampini PetscInt *ci, *cj; 5341ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5342ed502f03SStefano Zampini PetscScalar *ca; 5343ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5344ed502f03SStefano Zampini 53459566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 53469566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 53479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 53489566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5349ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5350ed502f03SStefano Zampini PetscInt k; 53519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 53529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 53539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5354ed502f03SStefano Zampini ci[0] = 0; 5355ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5356ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5357ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5358ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5359ed502f03SStefano Zampini /* diagonal portion of A */ 5360ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5361ed502f03SStefano Zampini cj[k] = *aj++; 5362ed502f03SStefano Zampini ca[k] = *aa++; 5363ed502f03SStefano Zampini } 5364ed502f03SStefano Zampini /* off-diagonal portion of A */ 5365ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5366ed502f03SStefano Zampini cj[k] = dn + *bj++; 5367ed502f03SStefano Zampini ca[k] = *ba++; 5368ed502f03SStefano Zampini } 5369ed502f03SStefano Zampini } 5370ed502f03SStefano Zampini /* put together the new matrix */ 53719566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5372ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5373ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5374ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5375ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5376ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5377ed502f03SStefano Zampini c->nonew = 0; 53789566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5379ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53809566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5381ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5382ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5383ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5384ed502f03SStefano Zampini /* diagonal portion of A */ 5385ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5386ed502f03SStefano Zampini /* off-diagonal portion of A */ 5387ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5388ed502f03SStefano Zampini } 53899566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 539098921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5393ed502f03SStefano Zampini if (glob) { 5394ed502f03SStefano Zampini PetscInt cst, *gidx; 5395ed502f03SStefano Zampini 53969566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 53979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5398ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5399ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 54009566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5401ed502f03SStefano Zampini } 5402ed502f03SStefano Zampini } 54039566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 54043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5405ed502f03SStefano Zampini } 5406ed502f03SStefano Zampini 540732fba14fSHong Zhang /*@C 540811a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 540932fba14fSHong Zhang 541032fba14fSHong Zhang Not Collective 541132fba14fSHong Zhang 541232fba14fSHong Zhang Input Parameters: 541332fba14fSHong Zhang + A - the matrix 541411a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 541520f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 541620f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 541732fba14fSHong Zhang 541832fba14fSHong Zhang Output Parameter: 541932fba14fSHong Zhang . A_loc - the local sequential matrix generated 542032fba14fSHong Zhang 542132fba14fSHong Zhang Level: developer 542232fba14fSHong Zhang 54231cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 542432fba14fSHong Zhang @*/ 5425d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5426d71ae5a4SJacob Faibussowitsch { 542732fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 542832fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 542932fba14fSHong Zhang IS isrowa, iscola; 543032fba14fSHong Zhang Mat *aloc; 54314a2b5492SBarry Smith PetscBool match; 543232fba14fSHong Zhang 543332fba14fSHong Zhang PetscFunctionBegin; 54349566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 543528b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 54369566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 543732fba14fSHong Zhang if (!row) { 54389371c9d4SSatish Balay start = A->rmap->rstart; 54399371c9d4SSatish Balay end = A->rmap->rend; 54409566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 544132fba14fSHong Zhang } else { 544232fba14fSHong Zhang isrowa = *row; 544332fba14fSHong Zhang } 544432fba14fSHong Zhang if (!col) { 5445d0f46423SBarry Smith start = A->cmap->rstart; 544632fba14fSHong Zhang cmap = a->garray; 5447d0f46423SBarry Smith nzA = a->A->cmap->n; 5448d0f46423SBarry Smith nzB = a->B->cmap->n; 54499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 545032fba14fSHong Zhang ncols = 0; 545132fba14fSHong Zhang for (i = 0; i < nzB; i++) { 545232fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 545332fba14fSHong Zhang else break; 545432fba14fSHong Zhang } 545532fba14fSHong Zhang imark = i; 545632fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 545732fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 54589566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 545932fba14fSHong Zhang } else { 546032fba14fSHong Zhang iscola = *col; 546132fba14fSHong Zhang } 546232fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 546432fba14fSHong Zhang aloc[0] = *A_loc; 546532fba14fSHong Zhang } 54669566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5467109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54689566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5469109e0772SStefano Zampini } 547032fba14fSHong Zhang *A_loc = aloc[0]; 54719566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 547248a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 547348a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54749566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 547632fba14fSHong Zhang } 547732fba14fSHong Zhang 54785c65b9ecSFande Kong /* 54795c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54805c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54815c65b9ecSFande Kong * on a global size. 54825c65b9ecSFande Kong * */ 5483ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5484d71ae5a4SJacob Faibussowitsch { 54855c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5486f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5487131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5488131c27b5Sprj- PetscMPIInt owner; 54895c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54905c65b9ecSFande Kong const PetscInt *lrowindices; 54915c65b9ecSFande Kong PetscSF sf, osf; 54925c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 54935c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 54945c65b9ecSFande Kong MPI_Comm comm; 54955c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5496fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 54975c65b9ecSFande Kong 54985c65b9ecSFande Kong PetscFunctionBegin; 54999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 55005c65b9ecSFande Kong /* plocalsize is the number of roots 55015c65b9ecSFande Kong * nrows is the number of leaves 55025c65b9ecSFande Kong * */ 55039566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 55049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 55059566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 55069566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 55075c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55085c65b9ecSFande Kong /* Find a remote index and an owner for a row 55095c65b9ecSFande Kong * The row could be local or remote 55105c65b9ecSFande Kong * */ 551134bcad68SFande Kong owner = 0; 551234bcad68SFande Kong lidx = 0; 55139566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 55145c65b9ecSFande Kong iremote[i].index = lidx; 55155c65b9ecSFande Kong iremote[i].rank = owner; 55165c65b9ecSFande Kong } 55175c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 55189566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5519f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 55205c65b9ecSFande Kong * offsets 55215c65b9ecSFande Kong * */ 55229566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55239566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55249566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5525bc8e477aSFande Kong 55269566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 55279566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 55289566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 55295c65b9ecSFande Kong roffsets[0] = 0; 55305c65b9ecSFande Kong roffsets[1] = 0; 55315c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 55324cf0e950SBarry Smith /* diagonal */ 55335c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 55344cf0e950SBarry Smith /* off-diagonal */ 55355c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 55365c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 55375c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 55385c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 55395c65b9ecSFande Kong } 55409566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 55419566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 55425c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 55439566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55449566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55459566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 55469566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 55479566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55489566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 55499566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 55505c65b9ecSFande Kong dntotalcols = 0; 55515c65b9ecSFande Kong ontotalcols = 0; 5552bc8e477aSFande Kong ncol = 0; 55535c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 55545c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5555bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 55564cf0e950SBarry Smith /* diagonal */ 55575c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 55584cf0e950SBarry Smith /* off-diagonal */ 55595c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 55605c65b9ecSFande Kong } 55615c65b9ecSFande Kong /* We do not need to figure the right number of columns 55625c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55635c65b9ecSFande Kong * */ 55649566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55659566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55669566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55675c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55684cf0e950SBarry Smith /* diagonal */ 55699566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55704cf0e950SBarry Smith /* off-diagonal */ 55719566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55724cf0e950SBarry Smith /* diagonal */ 55739566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55744cf0e950SBarry Smith /* off-diagonal */ 55759566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55765c65b9ecSFande Kong dntotalcols = 0; 55775c65b9ecSFande Kong ontotalcols = 0; 55785c65b9ecSFande Kong ntotalcols = 0; 55795c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 558034bcad68SFande Kong owner = 0; 55819566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55825c65b9ecSFande Kong /* Set iremote for diag matrix */ 55835c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55845c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55855c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55865c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55875c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55885c65b9ecSFande Kong } 55894cf0e950SBarry Smith /* off-diagonal */ 55905c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55915c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55925c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 55935c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 55945c65b9ecSFande Kong } 55955c65b9ecSFande Kong } 55969566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 55979566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 55989566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 55999566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 56005c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 56015c65b9ecSFande Kong * Diag matrix 56025c65b9ecSFande Kong * */ 56039566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 56049566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 56059566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 56065c65b9ecSFande Kong 56079566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 56084cf0e950SBarry Smith /* off-diagonal */ 56099566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 56109566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 56119566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 56129566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56144cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 56159566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56169566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56179566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 56185c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 56195c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 56209566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56215c65b9ecSFande Kong /* We want P_oth store global indices */ 56229566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 56235c65b9ecSFande Kong /* Use memory scalable approach */ 56249566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 56259566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 56269566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56279566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 56285c65b9ecSFande Kong /* Convert back to local indices */ 56295c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 56309566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 56315c65b9ecSFande Kong nout = 0; 56329566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 563308401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 56349566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 56355c65b9ecSFande Kong /* Exchange values */ 56369566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56379566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56405c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 56415c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 56429566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 56439566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 56445c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 56459566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 56469566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 56479566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 56489566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 56493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56505c65b9ecSFande Kong } 56515c65b9ecSFande Kong 56525c65b9ecSFande Kong /* 56535c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 56545c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 56555c65b9ecSFande Kong * */ 5656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5657d71ae5a4SJacob Faibussowitsch { 56585c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5659bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5660bc8e477aSFande Kong IS rows, map; 5661bc8e477aSFande Kong PetscHMapI hamp; 5662bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56635c65b9ecSFande Kong MPI_Comm comm; 56645c65b9ecSFande Kong PetscSF sf, osf; 5665bc8e477aSFande Kong PetscBool has; 56665c65b9ecSFande Kong 56675c65b9ecSFande Kong PetscFunctionBegin; 56689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56699566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56705c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56715c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56725c65b9ecSFande Kong * */ 56735c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56745c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5675eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5677bc8e477aSFande Kong count = 0; 5678bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5679bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5680bc8e477aSFande Kong key = a->garray[i] / dof; 56819566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5682bc8e477aSFande Kong if (!has) { 5683bc8e477aSFande Kong mapping[i] = count; 56849566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5685bc8e477aSFande Kong } else { 5686bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5687bc8e477aSFande Kong mapping[i] = count - 1; 56885c65b9ecSFande Kong } 5689bc8e477aSFande Kong } 56909566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56919566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5692eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 56939566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 56945c65b9ecSFande Kong off = 0; 56959566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 56969566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 56979566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 56989566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 56995c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 57009566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 57019566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 57029566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 57039566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 57049566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 57055c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 57065c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 570735cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5708fff043a9SJunchao Zhang */ 5709fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5710fff043a9SJunchao Zhang 57119566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 57129566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 571308401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 57145c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 57155c65b9ecSFande Kong /* Update values in place */ 57169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 57179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 57189566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57199566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57209566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 57219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 57229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 57239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 57246718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 57259566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 57263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57275c65b9ecSFande Kong } 57285c65b9ecSFande Kong 572925616d81SHong Zhang /*@C 573020f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 573125616d81SHong Zhang 5732c3339decSBarry Smith Collective 573325616d81SHong Zhang 573425616d81SHong Zhang Input Parameters: 573511a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 573611a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 573711a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 573825616d81SHong Zhang 5739f1a722f8SMatthew G. Knepley Output Parameters: 574027430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 574127430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5742f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 574325616d81SHong Zhang 574425616d81SHong Zhang Level: developer 574525616d81SHong Zhang 574620f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 574725616d81SHong Zhang @*/ 5748d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5749d71ae5a4SJacob Faibussowitsch { 5750899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5751b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 575225616d81SHong Zhang IS isrowb, iscolb; 57530298fd71SBarry Smith Mat *bseq = NULL; 575425616d81SHong Zhang 575525616d81SHong Zhang PetscFunctionBegin; 575620f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 575720f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57589566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 575925616d81SHong Zhang 576025616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5761d0f46423SBarry Smith start = A->cmap->rstart; 576225616d81SHong Zhang cmap = a->garray; 5763d0f46423SBarry Smith nzA = a->A->cmap->n; 5764d0f46423SBarry Smith nzB = a->B->cmap->n; 57659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 576625616d81SHong Zhang ncols = 0; 57670390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 576825616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 576925616d81SHong Zhang else break; 577025616d81SHong Zhang } 577125616d81SHong Zhang imark = i; 57720390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57730390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57749566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57759566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 577625616d81SHong Zhang } else { 577708401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57789371c9d4SSatish Balay isrowb = *rowb; 57799371c9d4SSatish Balay iscolb = *colb; 57809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 578125616d81SHong Zhang bseq[0] = *B_seq; 578225616d81SHong Zhang } 57839566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 578425616d81SHong Zhang *B_seq = bseq[0]; 57859566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 578625616d81SHong Zhang if (!rowb) { 57879566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 578825616d81SHong Zhang } else { 578925616d81SHong Zhang *rowb = isrowb; 579025616d81SHong Zhang } 579125616d81SHong Zhang if (!colb) { 57929566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 579325616d81SHong Zhang } else { 579425616d81SHong Zhang *colb = iscolb; 579525616d81SHong Zhang } 57969566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 57973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 579825616d81SHong Zhang } 5799429d309bSHong Zhang 5800f8487c73SHong Zhang /* 580127430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 580201b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5803429d309bSHong Zhang 5804c3339decSBarry Smith Collective 5805429d309bSHong Zhang 5806429d309bSHong Zhang Input Parameters: 580727430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 580827430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5809429d309bSHong Zhang 5810429d309bSHong Zhang Output Parameter: 58110298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 58120298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 58130298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5814598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5815429d309bSHong Zhang 581611a5261eSBarry Smith Developer Note: 581711a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 58186eb45d04SBarry Smith for this matrix. This is not desirable.. 58196eb45d04SBarry Smith 5820429d309bSHong Zhang Level: developer 5821429d309bSHong Zhang 5822f8487c73SHong Zhang */ 58236497c311SBarry Smith 5824d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5825d71ae5a4SJacob Faibussowitsch { 5826899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 58274b8d542aSHong Zhang VecScatter ctx; 5828ce94432eSBarry Smith MPI_Comm comm; 58293515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 58306497c311SBarry Smith PetscMPIInt nrecvs, nsends; 58313515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5832277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 58336497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5834277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5835ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5836ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5837429d309bSHong Zhang 5838429d309bSHong Zhang PetscFunctionBegin; 58399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 58409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5841a7c7454dSHong Zhang 584220f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 584320f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 58449566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 58459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5846a6b2eed2SHong Zhang 5847ec07b8f8SHong Zhang if (size == 1) { 5848ec07b8f8SHong Zhang startsj_s = NULL; 5849ec07b8f8SHong Zhang bufa_ptr = NULL; 585052f7967eSHong Zhang *B_oth = NULL; 58513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5852ec07b8f8SHong Zhang } 5853ec07b8f8SHong Zhang 5854fa83eaafSHong Zhang ctx = a->Mvctx; 58554b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 58564b8d542aSHong Zhang 58579566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 58583515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 58599566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 58609566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 58619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5862ddea5d60SJunchao Zhang rwaits = reqs; 58638e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5864429d309bSHong Zhang 5865b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5866429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5867a6b2eed2SHong Zhang /* i-array */ 5868a6b2eed2SHong Zhang /* post receives */ 58699566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5870a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 587174268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5872e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58736497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5874429d309bSHong Zhang } 5875a6b2eed2SHong Zhang 5876a6b2eed2SHong Zhang /* pack the outgoing message */ 58779566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58782205254eSKarl Rupp 58792205254eSKarl Rupp sstartsj[0] = 0; 58802205254eSKarl Rupp rstartsj[0] = 0; 5881a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58823515ee7fSJunchao Zhang if (nsends) { 58833515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58853515ee7fSJunchao Zhang } 5886a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58873515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5888e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 588987025532SHong Zhang for (j = 0; j < nrows; j++) { 5890d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5891e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58929566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58932205254eSKarl Rupp 5894e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 58952205254eSKarl Rupp 5896e42f35eeSHong Zhang len += ncols; 58979566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5898e42f35eeSHong Zhang } 5899a6b2eed2SHong Zhang k++; 5900429d309bSHong Zhang } 59016497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 59022205254eSKarl Rupp 5903dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5904429d309bSHong Zhang } 590587025532SHong Zhang /* recvs and sends of i-array are completed */ 59069566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59079566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5908e42f35eeSHong Zhang 5909a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 59109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufj)); 59119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &bufa)); 5912a6b2eed2SHong Zhang 591387025532SHong Zhang /* create i-array of B_oth */ 59149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aBn + 2, &b_othi)); 59152205254eSKarl Rupp 591687025532SHong Zhang b_othi[0] = 0; 5917a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5918a6b2eed2SHong Zhang k = 0; 5919a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 59203515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 59213515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 592287025532SHong Zhang for (j = 0; j < nrows; j++) { 592387025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 59249566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5925f91af8c7SBarry Smith k++; 5926a6b2eed2SHong Zhang } 5927dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5928a6b2eed2SHong Zhang } 59299566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5930a6b2eed2SHong Zhang 59316aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 59329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_othj)); 59339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b_othi[aBn] + 1, &b_otha)); 5934a6b2eed2SHong Zhang 593587025532SHong Zhang /* j-array */ 5936a6b2eed2SHong Zhang /* post receives of j-array */ 5937a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 593887025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59396497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_othj + rstartsj[i], nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5940a6b2eed2SHong Zhang } 5941e42f35eeSHong Zhang 5942e42f35eeSHong Zhang /* pack the outgoing message j-array */ 59433515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5944a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5945e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 5946a6b2eed2SHong Zhang bufJ = bufj + sstartsj[i]; 594787025532SHong Zhang for (j = 0; j < nrows; j++) { 5948d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5949e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59509566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5951ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 59529566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5953e42f35eeSHong Zhang } 595487025532SHong Zhang } 59556497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufj + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 595687025532SHong Zhang } 595787025532SHong Zhang 595887025532SHong Zhang /* recvs and sends of j-array are completed */ 59599566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 596087025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5961b7f45c76SHong Zhang sstartsj = *startsj_s; 59621d79065fSBarry Smith rstartsj = *startsj_r; 596387025532SHong Zhang bufa = *bufa_ptr; 59649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5965ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 596687025532SHong Zhang 596787025532SHong Zhang /* a-array */ 596887025532SHong Zhang /* post receives of a-array */ 596987025532SHong Zhang for (i = 0; i < nrecvs; i++) { 597087025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 59716497c311SBarry Smith PetscCallMPI(MPIU_Irecv(b_otha + rstartsj[i], nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 597287025532SHong Zhang } 5973e42f35eeSHong Zhang 5974e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59753515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 597687025532SHong Zhang for (i = 0; i < nsends; i++) { 5977e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 597887025532SHong Zhang bufA = bufa + sstartsj[i]; 597987025532SHong Zhang for (j = 0; j < nrows; j++) { 5980d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5981e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59829566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5983ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59849566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5985e42f35eeSHong Zhang } 5986a6b2eed2SHong Zhang } 59876497c311SBarry Smith PetscCallMPI(MPIU_Isend(bufa + sstartsj[i], sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5988a6b2eed2SHong Zhang } 598987025532SHong Zhang /* recvs and sends of a-array are completed */ 59909566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59919566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5992a6b2eed2SHong Zhang 599387025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5994dd460d27SBarry Smith Mat_SeqAIJ *b_oth; 5995dd460d27SBarry Smith 5996a6b2eed2SHong Zhang /* put together the new matrix */ 59979566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 5998a6b2eed2SHong Zhang 5999a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6000a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 600187025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 6002e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 6003e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 600487025532SHong Zhang b_oth->nonew = 0; 6005a6b2eed2SHong Zhang 60069566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 6007b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 60089566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 60099566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 6010dea91ad1SHong Zhang } else { 6011b7f45c76SHong Zhang *startsj_s = sstartsj; 60121d79065fSBarry Smith *startsj_r = rstartsj; 601387025532SHong Zhang *bufa_ptr = bufa; 601487025532SHong Zhang } 6015fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 60169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 6017dea91ad1SHong Zhang } 60183515ee7fSJunchao Zhang 60199566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 60209566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 60219566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 60223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6023429d309bSHong Zhang } 6024ccd8e176SBarry Smith 6025cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 6026cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 6027ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 60289779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 6029a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 6030191b95cbSRichard Tran Mills #endif 6031ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 6032cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 60335d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6034cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 60355d7652ecSHong Zhang #endif 6036d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6037d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 6038d24d4204SJose E. Roman #endif 603963c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 604063c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 604163c07aadSStefano Zampini #endif 60423338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 60433338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 60443338378cSStefano Zampini #endif 6045d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6046d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 6047d5e393b6SSuyash Tandon #endif 60483d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 60493d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 60503d0639e7SStefano Zampini #endif 6051d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 60524222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 60534222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 605417667f90SBarry Smith 6055fc4dec0aSBarry Smith /* 6056fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 6057fc4dec0aSBarry Smith 6058fc4dec0aSBarry Smith n p p 60592da392ccSBarry Smith [ ] [ ] [ ] 60602da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 60612da392ccSBarry Smith [ ] [ ] [ ] 6062fc4dec0aSBarry Smith 6063fc4dec0aSBarry Smith */ 6064d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6065d71ae5a4SJacob Faibussowitsch { 6066fc4dec0aSBarry Smith Mat At, Bt, Ct; 6067fc4dec0aSBarry Smith 6068fc4dec0aSBarry Smith PetscFunctionBegin; 60699566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60709566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6071fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 60729566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60739566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60747fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60759566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60769566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6078fc4dec0aSBarry Smith } 6079fc4dec0aSBarry Smith 6080d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6081d71ae5a4SJacob Faibussowitsch { 60826718818eSStefano Zampini PetscBool cisdense; 6083fc4dec0aSBarry Smith 6084fc4dec0aSBarry Smith PetscFunctionBegin; 608508401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60869566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60879566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6088d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 608948a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60909566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6091f75ecaa4SHong Zhang 60924222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6094fc4dec0aSBarry Smith } 6095fc4dec0aSBarry Smith 6096d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6097d71ae5a4SJacob Faibussowitsch { 60984222ddf1SHong Zhang Mat_Product *product = C->product; 60994222ddf1SHong Zhang Mat A = product->A, B = product->B; 6100fc4dec0aSBarry Smith 6101fc4dec0aSBarry Smith PetscFunctionBegin; 610220f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 610320f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 61044222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 61054222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 61063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6107fc4dec0aSBarry Smith } 6108fc4dec0aSBarry Smith 6109d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6110d71ae5a4SJacob Faibussowitsch { 61114222ddf1SHong Zhang Mat_Product *product = C->product; 61124222ddf1SHong Zhang 61134222ddf1SHong Zhang PetscFunctionBegin; 611448a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 61153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 61164222ddf1SHong Zhang } 6117394ed5ebSJunchao Zhang 611827430b45SBarry Smith /* 611927430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6120394ed5ebSJunchao Zhang 6121394ed5ebSJunchao Zhang Input Parameters: 6122394ed5ebSJunchao Zhang 6123651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6124651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6125394ed5ebSJunchao Zhang 6126158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6127394ed5ebSJunchao Zhang 6128394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6129394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6130394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6131394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6132394ed5ebSJunchao Zhang 6133394ed5ebSJunchao Zhang Similar for Set2. 6134394ed5ebSJunchao Zhang 6135394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6136394ed5ebSJunchao Zhang 6137158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6138394ed5ebSJunchao Zhang 6139394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6140394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6141394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6142394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6143394ed5ebSJunchao Zhang */ 6144d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6145d71ae5a4SJacob Faibussowitsch { 6146394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6147394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6148394ed5ebSJunchao Zhang 6149394ed5ebSJunchao Zhang PetscFunctionBegin; 61509566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6151394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6152394ed5ebSJunchao Zhang i[0] = 0; 6153394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6154394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6155394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6156394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6157394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6158394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6159394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6160394ed5ebSJunchao Zhang j[t] = j1[b1]; 6161394ed5ebSJunchao Zhang imap1[t1] = t; 6162394ed5ebSJunchao Zhang imap2[t2] = t; 6163394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6164394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61659371c9d4SSatish Balay t1++; 61669371c9d4SSatish Balay t2++; 61679371c9d4SSatish Balay t++; 6168394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6169394ed5ebSJunchao Zhang j[t] = j1[b1]; 6170394ed5ebSJunchao Zhang imap1[t1] = t; 6171394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61729371c9d4SSatish Balay t1++; 61739371c9d4SSatish Balay t++; 6174394ed5ebSJunchao Zhang } else { 6175394ed5ebSJunchao Zhang j[t] = j2[b2]; 6176394ed5ebSJunchao Zhang imap2[t2] = t; 6177394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61789371c9d4SSatish Balay t2++; 61799371c9d4SSatish Balay t++; 6180394ed5ebSJunchao Zhang } 6181394ed5ebSJunchao Zhang } 6182394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6183394ed5ebSJunchao Zhang while (b1 < e1) { 6184394ed5ebSJunchao Zhang j[t] = j1[b1]; 6185394ed5ebSJunchao Zhang imap1[t1] = t; 6186394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61879371c9d4SSatish Balay t1++; 61889371c9d4SSatish Balay t++; 6189394ed5ebSJunchao Zhang } 6190394ed5ebSJunchao Zhang while (b2 < e2) { 6191394ed5ebSJunchao Zhang j[t] = j2[b2]; 6192394ed5ebSJunchao Zhang imap2[t2] = t; 6193394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61949371c9d4SSatish Balay t2++; 61959371c9d4SSatish Balay t++; 6196394ed5ebSJunchao Zhang } 61976497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6198394ed5ebSJunchao Zhang } 61993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6200394ed5ebSJunchao Zhang } 6201394ed5ebSJunchao Zhang 620227430b45SBarry Smith /* 620327430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6204394ed5ebSJunchao Zhang 6205394ed5ebSJunchao Zhang Input Parameters: 6206394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6207394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6208394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6209394ed5ebSJunchao Zhang 6210394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6211394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6212394ed5ebSJunchao Zhang 6213394ed5ebSJunchao Zhang Output Parameters: 6214394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6215394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6216394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6217394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6218394ed5ebSJunchao Zhang 6219394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6220158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6221158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6222394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6223394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6224394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6225394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6226394ed5ebSJunchao Zhang 6227394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6228394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6229394ed5ebSJunchao Zhang 6230394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6231394ed5ebSJunchao Zhang 6232158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6233394ed5ebSJunchao Zhang */ 6234d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6235d71ae5a4SJacob Faibussowitsch { 6236394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6237394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6238394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6239394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6240394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6241394ed5ebSJunchao Zhang 6242394ed5ebSJunchao Zhang PetscFunctionBegin; 62439566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 62449566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6245394ed5ebSJunchao Zhang m = rend - rstart; 6246394ed5ebSJunchao Zhang 6247651b1cf9SStefano Zampini /* Skip negative rows */ 6248651b1cf9SStefano Zampini for (k = 0; k < n; k++) 62499371c9d4SSatish Balay if (i[k] >= 0) break; 6250394ed5ebSJunchao Zhang 6251394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6252394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6253394ed5ebSJunchao Zhang */ 6254394ed5ebSJunchao Zhang while (k < n) { 6255394ed5ebSJunchao Zhang row = i[k]; 6256394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 62579371c9d4SSatish Balay for (s = k; s < n; s++) 62589371c9d4SSatish Balay if (i[s] != row) break; 6259651b1cf9SStefano Zampini 62601690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6261394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 62621690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 626354c59aa7SJacob Faibussowitsch else PetscAssert((j[p] >= 0) && (j[p] <= mat->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is out of range", j[p]); 6264394ed5ebSJunchao Zhang } 62659566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6266158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6267394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6268394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6269394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 6270394ed5ebSJunchao Zhang 6271394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6272394ed5ebSJunchao Zhang Atot += mid - k; 6273394ed5ebSJunchao Zhang Btot += s - mid; 6274394ed5ebSJunchao Zhang 6275651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6276394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6277394ed5ebSJunchao Zhang col = j[p]; 62789371c9d4SSatish Balay do { 62791690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 62809371c9d4SSatish Balay p++; 6281651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6282394ed5ebSJunchao Zhang Annz++; 6283394ed5ebSJunchao Zhang } 6284394ed5ebSJunchao Zhang 6285651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6286394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6287394ed5ebSJunchao Zhang col = j[p]; 6288d71ae5a4SJacob Faibussowitsch do { 6289d71ae5a4SJacob Faibussowitsch p++; 6290d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6291394ed5ebSJunchao Zhang Bnnz++; 6292394ed5ebSJunchao Zhang } 6293394ed5ebSJunchao Zhang k = s; 6294394ed5ebSJunchao Zhang } 6295394ed5ebSJunchao Zhang 6296394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6297158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6298158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6299158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6300158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6301394ed5ebSJunchao Zhang 63026aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6303394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6304394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6305394ed5ebSJunchao Zhang k = rowBegin[r]; 6306394ed5ebSJunchao Zhang mid = rowMid[r]; 6307394ed5ebSJunchao Zhang s = rowEnd[r]; 63088e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 63098e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6310394ed5ebSJunchao Zhang Atot += mid - k; 6311394ed5ebSJunchao Zhang Btot += s - mid; 6312394ed5ebSJunchao Zhang 6313394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6314394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6315394ed5ebSJunchao Zhang col = j[p]; 6316394ed5ebSJunchao Zhang q = p; 6317d71ae5a4SJacob Faibussowitsch do { 6318d71ae5a4SJacob Faibussowitsch p++; 6319d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6320394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6321394ed5ebSJunchao Zhang Annz++; 6322394ed5ebSJunchao Zhang } 6323394ed5ebSJunchao Zhang 6324394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6325394ed5ebSJunchao Zhang col = j[p]; 6326394ed5ebSJunchao Zhang q = p; 6327d71ae5a4SJacob Faibussowitsch do { 6328d71ae5a4SJacob Faibussowitsch p++; 6329d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6330394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6331394ed5ebSJunchao Zhang Bnnz++; 6332394ed5ebSJunchao Zhang } 6333394ed5ebSJunchao Zhang } 6334394ed5ebSJunchao Zhang /* Output */ 6335394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6336394ed5ebSJunchao Zhang *Annz_ = Annz; 6337394ed5ebSJunchao Zhang *Atot_ = Atot; 6338394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6339394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6340394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6341394ed5ebSJunchao Zhang *Btot_ = Btot; 6342394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 63433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6344394ed5ebSJunchao Zhang } 6345394ed5ebSJunchao Zhang 634627430b45SBarry Smith /* 634727430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6348158ec288SJunchao Zhang 6349158ec288SJunchao Zhang Input Parameters: 6350158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6351158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6352158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6353651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6354158ec288SJunchao Zhang 6355158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6356158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6357158ec288SJunchao Zhang 6358158ec288SJunchao Zhang Example: 6359158ec288SJunchao Zhang nnz1 = 4 6360158ec288SJunchao Zhang nnz = 6 6361158ec288SJunchao Zhang imap = [1,3,4,5] 6362158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6363158ec288SJunchao Zhang then, 6364158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6365158ec288SJunchao Zhang */ 6366d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6367d71ae5a4SJacob Faibussowitsch { 6368158ec288SJunchao Zhang PetscCount k, p; 6369158ec288SJunchao Zhang 6370158ec288SJunchao Zhang PetscFunctionBegin; 6371158ec288SJunchao Zhang jmap_new[0] = 0; 6372158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6373158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6374158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6375158ec288SJunchao Zhang } 6376158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6378158ec288SJunchao Zhang } 6379158ec288SJunchao Zhang 638049abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(void **data) 63812c4ab24aSJunchao Zhang { 638249abdd8aSBarry Smith MatCOOStruct_MPIAIJ *coo = (MatCOOStruct_MPIAIJ *)*data; 63832c4ab24aSJunchao Zhang 63842c4ab24aSJunchao Zhang PetscFunctionBegin; 63852c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63862c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63872c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63882c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63892c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63902c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63912c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63922c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63932c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63942c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 63952c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 63962c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 63972c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 63982c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 63992c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 64002c4ab24aSJunchao Zhang } 64012c4ab24aSJunchao Zhang 6402d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6403d71ae5a4SJacob Faibussowitsch { 6404394ed5ebSJunchao Zhang MPI_Comm comm; 6405394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6406394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6407394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6408394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 64092c4ab24aSJunchao Zhang PetscContainer container; 64102c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6411394ed5ebSJunchao Zhang 6412394ed5ebSJunchao Zhang PetscFunctionBegin; 64139566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 64149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6415cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6416eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6417cbc6b225SStefano Zampini #else 64189566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6419cbc6b225SStefano Zampini #endif 64209566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6421cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6422cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6423cbc6b225SStefano Zampini 64249566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 64259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 64269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 64279566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 64289566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 64299566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 64309566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 64319566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 64329566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6433394ed5ebSJunchao Zhang 64346aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6435394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6436394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6437e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6438e8729f6fSJunchao Zhang 6439e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6440394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6441394ed5ebSJunchao Zhang 6442394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6443394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6444394ed5ebSJunchao Zhang will have positive row indices. 6445394ed5ebSJunchao Zhang */ 6446394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 64471690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 64481690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6449f7d195e4SLawrence Mitchell else { 6450f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 64511690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6452f7d195e4SLawrence Mitchell } 6453394ed5ebSJunchao Zhang } 6454394ed5ebSJunchao Zhang 6455da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 64569566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6457651b1cf9SStefano Zampini 6458651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6459651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 64601690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 64616497c311SBarry Smith PetscCount i1start = k; 6462651b1cf9SStefano Zampini 64631690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 64641690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6465394ed5ebSJunchao Zhang 6466394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6467394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6468394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6469394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6470394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6471394ed5ebSJunchao Zhang const PetscInt *ranges; 6472394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6473394ed5ebSJunchao Zhang 64749566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64759566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6476394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6477394ed5ebSJunchao Zhang PetscMPIInt owner; 6478394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6479cbc6b225SStefano Zampini 6480394ed5ebSJunchao Zhang /* Locate a row range */ 6481394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64829566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6483394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6484394ed5ebSJunchao Zhang 6485394ed5ebSJunchao Zhang /* Find the first index 'p' in [k,n) with i[p] belonging to next owner */ 64869566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6487394ed5ebSJunchao Zhang 6488394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6489394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6490394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6491394ed5ebSJunchao Zhang PetscInt *nentries2; 6492394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6493cbc6b225SStefano Zampini 64949566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 64959566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 64969566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(nentries2, nentries2, maxNsend + 1)); 64979566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries2)); 6498394ed5ebSJunchao Zhang sendto = sendto2; 6499394ed5ebSJunchao Zhang nentries = nentries2; 6500394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6501394ed5ebSJunchao Zhang } 6502394ed5ebSJunchao Zhang sendto[nsend] = owner; 65036497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6504394ed5ebSJunchao Zhang nsend++; 6505394ed5ebSJunchao Zhang k = p; 6506394ed5ebSJunchao Zhang } 6507394ed5ebSJunchao Zhang 6508394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6509394ed5ebSJunchao Zhang PetscSF sf1; 6510394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6511394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6512394ed5ebSJunchao Zhang PetscInt *offsets; 6513394ed5ebSJunchao Zhang PetscSFNode *iremote; 6514394ed5ebSJunchao Zhang 65159566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 65169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 65179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6518394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6519394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6520394ed5ebSJunchao Zhang iremote[k].index = 0; 6521394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 652254c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6523394ed5ebSJunchao Zhang } 65249566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 65259566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 65269566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 65279566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6528e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6529394ed5ebSJunchao Zhang 6530394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6531394ed5ebSJunchao Zhang PetscSF sf2; 6532394ed5ebSJunchao Zhang nroots = nroots2; 6533394ed5ebSJunchao Zhang nleaves = nleaves2; 65349566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 65359566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 65369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6537394ed5ebSJunchao Zhang p = 0; 6538394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 653954c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6540394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6541394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 65426497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6543394ed5ebSJunchao Zhang } 6544394ed5ebSJunchao Zhang } 65459566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6546394ed5ebSJunchao Zhang 6547394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6548394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6549394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 65509566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6551834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6552834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6553de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6554de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6555834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6556834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6557834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6558834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6559394ed5ebSJunchao Zhang 65609566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65619566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6562394ed5ebSJunchao Zhang 6563394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6564394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65659566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6566394ed5ebSJunchao Zhang 6567651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6568651b1cf9SStefano Zampini PetscCount *Cperm1; 6569834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6570de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6571651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6572834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6573651b1cf9SStefano Zampini 6574651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6575651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6576651b1cf9SStefano Zampini PetscBool hypre; 657717b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6578651b1cf9SStefano Zampini if (hypre) { 6579651b1cf9SStefano Zampini PetscInt *minj; 6580651b1cf9SStefano Zampini PetscBT hasdiag; 6581651b1cf9SStefano Zampini 6582651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6583651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 65841690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6585651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6586651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6587651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6588651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6589651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6590651b1cf9SStefano Zampini } 6591651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6592651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6593651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6594651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6595651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6596651b1cf9SStefano Zampini } 6597651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6598651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6599651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6600651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6601651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6602651b1cf9SStefano Zampini } 6603651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6604651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6605651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6606651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6607651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6608651b1cf9SStefano Zampini } 6609651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6610651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6611651b1cf9SStefano Zampini } 6612651b1cf9SStefano Zampini 6613651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6614651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6615651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6616651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6617394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6618394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6619394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6620394ed5ebSJunchao Zhang 6621651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 66229566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6623651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 66249566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6625394ed5ebSJunchao Zhang 6626394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6627394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6628394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6629394ed5ebSJunchao Zhang 66309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 66319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 66329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 66339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6634394ed5ebSJunchao Zhang 6635394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6636158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6637158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6638158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6639158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6640394ed5ebSJunchao Zhang 66419566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 66429566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6643158ec288SJunchao Zhang 6644158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6645158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6646158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6647158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6648158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6649158ec288SJunchao Zhang 6650158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6651158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6652158ec288SJunchao Zhang 6653158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6654158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6655158ec288SJunchao Zhang 6656158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6657158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6658158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6659158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 66609566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66619566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6662e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66639566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6664394ed5ebSJunchao Zhang 6665158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6666158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6667158ec288SJunchao Zhang 6668394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6669394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6670394ed5ebSJunchao Zhang PetscInt *Aj_new; 66719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66729566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66739566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6674394ed5ebSJunchao Zhang Aj = Aj_new; 6675394ed5ebSJunchao Zhang } 6676394ed5ebSJunchao Zhang 6677394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6678394ed5ebSJunchao Zhang PetscInt *Bj_new; 66799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66809566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66819566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6682394ed5ebSJunchao Zhang Bj = Bj_new; 6683394ed5ebSJunchao Zhang } 6684394ed5ebSJunchao Zhang 6685cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6686394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6687cbc6b225SStefano Zampini MatType rtype; 6688394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6689cf8ba265SJunchao Zhang PetscObjectState state; 66909566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66919566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6692394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66939371c9d4SSatish Balay if (cstart) { 66949371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 66959371c9d4SSatish Balay } 6696c508b908SBarry Smith 66979566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6698c508b908SBarry Smith 6699c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6700c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 67019566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 67020da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6703c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6704c508b908SBarry Smith 6705c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6706c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 67079566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 67080da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6709c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6710c508b908SBarry Smith 67119566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 67125bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6713cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6714462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6715cbc6b225SStefano Zampini 6716394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6717394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 67189f0612e4SBarry Smith a->free_a = PETSC_TRUE; 67199f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 67209f0612e4SBarry Smith b->free_a = PETSC_TRUE; 67219f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 672217b874c6SStefano Zampini a->maxnz = a->nz; 672317b874c6SStefano Zampini b->maxnz = b->nz; 6724394ed5ebSJunchao Zhang 6725cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 67269566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 67279566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 67289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 67299566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6730cbc6b225SStefano Zampini 67312c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 67322c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 67332c4ab24aSJunchao Zhang coo->n = coo_n; 67342c4ab24aSJunchao Zhang coo->sf = sf2; 67352c4ab24aSJunchao Zhang coo->sendlen = nleaves; 67362c4ab24aSJunchao Zhang coo->recvlen = nroots; 67372c4ab24aSJunchao Zhang coo->Annz = Annz; 67382c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 67392c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 67402c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 67412c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 67422c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 67432c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 67442c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 67452c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 67462c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 67472c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 67482c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 67492c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 67502c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 67512c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 67522c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 67532c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 67542c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 67552c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 67562c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 67572c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 67582c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 67592c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 676049abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67612c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67622c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6764394ed5ebSJunchao Zhang } 6765394ed5ebSJunchao Zhang 6766d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6767d71ae5a4SJacob Faibussowitsch { 6768394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6769394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6770394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67712c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67722c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67732c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67742c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67752c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67762c4ab24aSJunchao Zhang PetscContainer container; 67772c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6778394ed5ebSJunchao Zhang 6779394ed5ebSJunchao Zhang PetscFunctionBegin; 67802c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67812c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67822c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 67832c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67842c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67852c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67862c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67872c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67882c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67892c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67902c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67912c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67922c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67932c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67942c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67952c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67962c4ab24aSJunchao Zhang 67979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 67989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6799394ed5ebSJunchao Zhang 6800394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 68012c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6802394ed5ebSJunchao Zhang 6803394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 68042c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6805394ed5ebSJunchao Zhang /* Add local entries to A and B */ 68062c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6807da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6808158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6809158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6810394ed5ebSJunchao Zhang } 68112c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6812158ec288SJunchao Zhang PetscScalar sum = 0.0; 6813158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6814158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6815394ed5ebSJunchao Zhang } 68162c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6817394ed5ebSJunchao Zhang 6818394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 68192c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6820394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6821394ed5ebSJunchao Zhang } 68222c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6823394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6824394ed5ebSJunchao Zhang } 68259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 68269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 68273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6828394ed5ebSJunchao Zhang } 6829394ed5ebSJunchao Zhang 6830ccd8e176SBarry Smith /*MC 6831ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6832ccd8e176SBarry Smith 6833ccd8e176SBarry Smith Options Database Keys: 683411a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6835ccd8e176SBarry Smith 6836ccd8e176SBarry Smith Level: beginner 68370cd7f59aSBarry Smith 68380cd7f59aSBarry Smith Notes: 68392ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 68400cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 68410cd7f59aSBarry Smith in the matrix 68420cd7f59aSBarry Smith 684311a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 684411a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6845ccd8e176SBarry Smith 68461cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6847ccd8e176SBarry Smith M*/ 6848d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6849d71ae5a4SJacob Faibussowitsch { 6850ccd8e176SBarry Smith Mat_MPIAIJ *b; 6851ccd8e176SBarry Smith PetscMPIInt size; 6852ccd8e176SBarry Smith 6853ccd8e176SBarry Smith PetscFunctionBegin; 68549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 68552205254eSKarl Rupp 68564dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6857ccd8e176SBarry Smith B->data = (void *)b; 6858aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6859ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6860ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6861ccd8e176SBarry Smith b->size = size; 68622205254eSKarl Rupp 68639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6864ccd8e176SBarry Smith 6865ccd8e176SBarry Smith /* build cache for off array entries formed */ 68669566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68672205254eSKarl Rupp 6868ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6869f4259b30SLisandro Dalcin b->colmap = NULL; 6870f4259b30SLisandro Dalcin b->garray = NULL; 6871ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6872ccd8e176SBarry Smith 6873ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68740298fd71SBarry Smith b->lvec = NULL; 68750298fd71SBarry Smith b->Mvctx = NULL; 6876ccd8e176SBarry Smith 6877ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6878f4259b30SLisandro Dalcin b->rowindices = NULL; 6879f4259b30SLisandro Dalcin b->rowvalues = NULL; 6880ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6881ccd8e176SBarry Smith 6882f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68830298fd71SBarry Smith b->spptr = NULL; 6884f60c3dc2SHong Zhang 68859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 6891674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ)); 68929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68963d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 68983d0639e7SStefano Zampini #endif 6899d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6900d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6901d5e393b6SSuyash Tandon #endif 69023d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 69039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 69043d0639e7SStefano Zampini #endif 69059779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 69069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6907191b95cbSRichard Tran Mills #endif 69089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 69099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 69109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 69119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 69125d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 69139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 69145d7652ecSHong Zhang #endif 6915d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 69169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6917d24d4204SJose E. Roman #endif 69189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 69199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 69203dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 69219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 69229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 69233dad0653Sstefano_zampini #endif 69249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 69259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 69269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 69279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 69289566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 69293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6930ccd8e176SBarry Smith } 693181824310SBarry Smith 69325d83a8b1SBarry Smith /*@ 693311a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 693403bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 693503bfb495SBarry Smith 6936d083f849SBarry Smith Collective 693703bfb495SBarry Smith 693803bfb495SBarry Smith Input Parameters: 693903bfb495SBarry Smith + comm - MPI communicator 694011a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 694103bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6942d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 69432ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 69442ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 69452ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6946483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 694704ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 694803bfb495SBarry Smith . a - matrix values 6949483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 69502ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 695103bfb495SBarry Smith - oa - matrix values 695203bfb495SBarry Smith 695303bfb495SBarry Smith Output Parameter: 695403bfb495SBarry Smith . mat - the matrix 695503bfb495SBarry Smith 695603bfb495SBarry Smith Level: advanced 695703bfb495SBarry Smith 695803bfb495SBarry Smith Notes: 6959f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6960292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 696103bfb495SBarry Smith 69622ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 696303bfb495SBarry Smith 69642ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 696503bfb495SBarry Smith 69667b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69677b55108eSBarry Smith 6968dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6969dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6970dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6971dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 697211a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6973dca341c0SJed Brown communication if it is known that only local entries will be set. 697403bfb495SBarry Smith 69751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6976db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69772b26979fSBarry Smith @*/ 6978d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6979d71ae5a4SJacob Faibussowitsch { 698003bfb495SBarry Smith Mat_MPIAIJ *maij; 698103bfb495SBarry Smith 698203bfb495SBarry Smith PetscFunctionBegin; 698308401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6984aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6985aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69869566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69889566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 698903bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69902205254eSKarl Rupp 69918d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 699203bfb495SBarry Smith 69939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 699503bfb495SBarry Smith 69969566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69979566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 699803bfb495SBarry Smith 69999566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 70009566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 70019566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 70029566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 70039566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 70043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 700503bfb495SBarry Smith } 700603bfb495SBarry Smith 70074e84afc0SStefano Zampini typedef struct { 70084e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 70094e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 70104e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 70114e84afc0SStefano Zampini 70124e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 70134e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 70144e84afc0SStefano Zampini PetscScalar *bufa; 70154e84afc0SStefano Zampini Mat P_oth; 70164e84afc0SStefano Zampini 70174e84afc0SStefano Zampini /* may take advantage of merging product->B */ 7018ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 70194e84afc0SStefano Zampini 7020ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 70214e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 70224e84afc0SStefano Zampini of the temporary storage */ 70234e84afc0SStefano Zampini PetscBool reusesym; 70244e84afc0SStefano Zampini 70254e84afc0SStefano Zampini /* support for COO values insertion */ 7026ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 7027ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 7028ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 7029ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 7030c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 7031c215019aSStefano Zampini PetscMemType mtype; 70324e84afc0SStefano Zampini 70334e84afc0SStefano Zampini /* customization */ 70344e84afc0SStefano Zampini PetscBool abmerge; 7035abb89eb1SStefano Zampini PetscBool P_oth_bind; 70364e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 70374e84afc0SStefano Zampini 7038ba38deedSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMPIAIJBACKEND(void *data) 7039d71ae5a4SJacob Faibussowitsch { 70404e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata = (MatMatMPIAIJBACKEND *)data; 70414e84afc0SStefano Zampini PetscInt i; 70424e84afc0SStefano Zampini 70434e84afc0SStefano Zampini PetscFunctionBegin; 70449566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 70459566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 70469566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 70479566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 70489566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 70499566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 70509566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 705148a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 70529566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 70539566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 70549566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 70559566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 70569566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 70579566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 70583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70594e84afc0SStefano Zampini } 70604e84afc0SStefano Zampini 7061fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7062fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7063fff043a9SJunchao Zhang */ 7064d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7065d71ae5a4SJacob Faibussowitsch { 7066c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7067c215019aSStefano Zampini 7068c215019aSStefano Zampini PetscFunctionBegin; 70699566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7070c215019aSStefano Zampini if (f) { 70719566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7072c215019aSStefano Zampini } else { 7073c215019aSStefano Zampini const PetscScalar *vv; 7074c215019aSStefano Zampini 70759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7076c215019aSStefano Zampini if (n && idx) { 7077c215019aSStefano Zampini PetscScalar *w = v; 7078c215019aSStefano Zampini const PetscInt *oi = idx; 7079c215019aSStefano Zampini PetscInt j; 7080c215019aSStefano Zampini 7081c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7082c215019aSStefano Zampini } else { 70839566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7084c215019aSStefano Zampini } 70859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7086c215019aSStefano Zampini } 70873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7088c215019aSStefano Zampini } 7089c215019aSStefano Zampini 7090d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7091d71ae5a4SJacob Faibussowitsch { 70924e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70934e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70944e84afc0SStefano Zampini 70954e84afc0SStefano Zampini PetscFunctionBegin; 70964e84afc0SStefano Zampini MatCheckProduct(C, 1); 709728b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 70984e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 70994e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 710048a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 710148a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 71024e84afc0SStefano Zampini } 71034e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7104abb89eb1SStefano Zampini 7105abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 710608401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 71079566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7108abb89eb1SStefano Zampini } 71094e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 71106497c311SBarry Smith PetscInt noff; 71114e84afc0SStefano Zampini 71126497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 71134e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 71144e84afc0SStefano Zampini if (noff) { 71156497c311SBarry Smith PetscInt nown; 7116c215019aSStefano Zampini 71176497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 71189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 71199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 71204e84afc0SStefano Zampini n_o += noff; 71214e84afc0SStefano Zampini n_d += nown; 71224e84afc0SStefano Zampini } else { 7123c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7124c215019aSStefano Zampini 71259566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 71264e84afc0SStefano Zampini n_d += mm->nz; 71274e84afc0SStefano Zampini } 71284e84afc0SStefano Zampini } 7129c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 71309566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71319566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 71324e84afc0SStefano Zampini } 71339566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 71343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71354e84afc0SStefano Zampini } 71364e84afc0SStefano Zampini 71374e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 71384e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7139d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7140d71ae5a4SJacob Faibussowitsch { 71414e84afc0SStefano Zampini Mat_Product *product = C->product; 7142ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 71434e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 71444e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 71454e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 71464e84afc0SStefano Zampini IS glob = NULL; 71474e84afc0SStefano Zampini const char *prefix; 71484e84afc0SStefano Zampini char pprefix[256]; 71494e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 715082a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 715182a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7152ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7153ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7154ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7155ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7156ddea5d60SJunchao Zhang 71574e84afc0SStefano Zampini MatProductType ptype; 7158d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 71594e84afc0SStefano Zampini PetscMPIInt size; 71604e84afc0SStefano Zampini 71614e84afc0SStefano Zampini PetscFunctionBegin; 71624e84afc0SStefano Zampini MatCheckProduct(C, 1); 716328b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71644e84afc0SStefano Zampini ptype = product->type; 7165b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7166fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7167fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7168fa046f9fSJunchao Zhang } 71694e84afc0SStefano Zampini switch (ptype) { 71704e84afc0SStefano Zampini case MATPRODUCT_AB: 71714e84afc0SStefano Zampini A = product->A; 71724e84afc0SStefano Zampini P = product->B; 71734e84afc0SStefano Zampini m = A->rmap->n; 71744e84afc0SStefano Zampini n = P->cmap->n; 71754e84afc0SStefano Zampini M = A->rmap->N; 71764e84afc0SStefano Zampini N = P->cmap->N; 7177ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71784e84afc0SStefano Zampini break; 71794e84afc0SStefano Zampini case MATPRODUCT_AtB: 71804e84afc0SStefano Zampini P = product->A; 71814e84afc0SStefano Zampini A = product->B; 71824e84afc0SStefano Zampini m = P->cmap->n; 71834e84afc0SStefano Zampini n = A->cmap->n; 71844e84afc0SStefano Zampini M = P->cmap->N; 71854e84afc0SStefano Zampini N = A->cmap->N; 71864e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71874e84afc0SStefano Zampini break; 71884e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71894e84afc0SStefano Zampini A = product->A; 71904e84afc0SStefano Zampini P = product->B; 71914e84afc0SStefano Zampini m = P->cmap->n; 71924e84afc0SStefano Zampini n = P->cmap->n; 71934e84afc0SStefano Zampini M = P->cmap->N; 71944e84afc0SStefano Zampini N = P->cmap->N; 71954e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71964e84afc0SStefano Zampini break; 7197d71ae5a4SJacob Faibussowitsch default: 7198d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71994e84afc0SStefano Zampini } 72009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 72014e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 72024e84afc0SStefano Zampini 72034e84afc0SStefano Zampini /* defaults */ 72044e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 72054e84afc0SStefano Zampini mp[i] = NULL; 72064e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 72074e84afc0SStefano Zampini rmapt[i] = -1; 72084e84afc0SStefano Zampini cmapt[i] = -1; 72094e84afc0SStefano Zampini rmapa[i] = NULL; 72104e84afc0SStefano Zampini cmapa[i] = NULL; 72114e84afc0SStefano Zampini } 72124e84afc0SStefano Zampini 72134e84afc0SStefano Zampini /* customization */ 72149566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 72154e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 72164e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 72174e84afc0SStefano Zampini if (product->api_user) { 7218d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 72199566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72209566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7221d0609cedSBarry Smith PetscOptionsEnd(); 72224e84afc0SStefano Zampini } else { 7223d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 72249566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 72259566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7226d0609cedSBarry Smith PetscOptionsEnd(); 7227abb89eb1SStefano Zampini } 7228abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7229abb89eb1SStefano Zampini if (product->api_user) { 7230d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 72319566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7232d0609cedSBarry Smith PetscOptionsEnd(); 7233abb89eb1SStefano Zampini } else { 7234d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 72359566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7236d0609cedSBarry Smith PetscOptionsEnd(); 72374e84afc0SStefano Zampini } 72384e84afc0SStefano Zampini } 72394e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 72404e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 72419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 72429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 72439566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 72449566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 72459566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7246ddea5d60SJunchao Zhang 7247ddea5d60SJunchao Zhang cp = 0; 72484e84afc0SStefano Zampini switch (ptype) { 72494e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 72509566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 72514e84afc0SStefano Zampini 7252ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7253ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 72544e84afc0SStefano Zampini /* P is product->B */ 72559566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 72569566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 72579566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72589566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72599566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72609566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72619566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72624e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72639566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72649566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72659566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72664e84afc0SStefano Zampini rmapt[cp] = 1; 72674e84afc0SStefano Zampini cmapt[cp] = 2; 72684e84afc0SStefano Zampini cmapa[cp] = globidx; 72694e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72704e84afc0SStefano Zampini cp++; 7271ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72729566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72739566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72749566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72759566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72769566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72779566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72784e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72799566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72809566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72814e84afc0SStefano Zampini rmapt[cp] = 1; 72824e84afc0SStefano Zampini cmapt[cp] = 1; 72834e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72844e84afc0SStefano Zampini cp++; 72859566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72869566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72879566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72889566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72899566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72909566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72914e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72929566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72939566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72944e84afc0SStefano Zampini rmapt[cp] = 1; 72954e84afc0SStefano Zampini cmapt[cp] = 2; 72964e84afc0SStefano Zampini cmapa[cp] = p->garray; 72974e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72984e84afc0SStefano Zampini cp++; 72994e84afc0SStefano Zampini } 7300ddea5d60SJunchao Zhang 7301ddea5d60SJunchao Zhang /* A_off * P_other */ 73024e84afc0SStefano Zampini if (mmdata->P_oth) { 73039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 73049566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7305f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73069566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73079566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73089566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73099566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73109566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73119566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73129566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73134e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73149566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73159566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73164e84afc0SStefano Zampini rmapt[cp] = 1; 73174e84afc0SStefano Zampini cmapt[cp] = 2; 73184e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73194e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73204e84afc0SStefano Zampini cp++; 73214e84afc0SStefano Zampini } 73224e84afc0SStefano Zampini break; 7323ddea5d60SJunchao Zhang 73244e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 73254e84afc0SStefano Zampini /* A is product->B */ 73269566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7327ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 73289566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 73299566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73309566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73319566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73329566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73339566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73344e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73359566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73369566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73379566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73384e84afc0SStefano Zampini rmapt[cp] = 2; 73394e84afc0SStefano Zampini rmapa[cp] = globidx; 73404e84afc0SStefano Zampini cmapt[cp] = 2; 73414e84afc0SStefano Zampini cmapa[cp] = globidx; 73424e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73434e84afc0SStefano Zampini cp++; 73444e84afc0SStefano Zampini } else { 73459566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 73469566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73479566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73489566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73499566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73509566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73514e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73529566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73539566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73549566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73554e84afc0SStefano Zampini rmapt[cp] = 1; 73564e84afc0SStefano Zampini cmapt[cp] = 2; 73574e84afc0SStefano Zampini cmapa[cp] = globidx; 73584e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73594e84afc0SStefano Zampini cp++; 73609566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73619566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73629566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73639566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73649566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73659566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73664e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73679566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73689566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73694e84afc0SStefano Zampini rmapt[cp] = 2; 73704e84afc0SStefano Zampini rmapa[cp] = p->garray; 73714e84afc0SStefano Zampini cmapt[cp] = 2; 73724e84afc0SStefano Zampini cmapa[cp] = globidx; 73734e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73744e84afc0SStefano Zampini cp++; 73754e84afc0SStefano Zampini } 73764e84afc0SStefano Zampini break; 73774e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73789566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73794e84afc0SStefano Zampini /* P is product->B */ 73809566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73819566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73829566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73839566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73849566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73859566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73869566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73874e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73889566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73899566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73909566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73914e84afc0SStefano Zampini rmapt[cp] = 2; 73924e84afc0SStefano Zampini rmapa[cp] = globidx; 73934e84afc0SStefano Zampini cmapt[cp] = 2; 73944e84afc0SStefano Zampini cmapa[cp] = globidx; 73954e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73964e84afc0SStefano Zampini cp++; 73974e84afc0SStefano Zampini if (mmdata->P_oth) { 73989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73999566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7400f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 74019566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 74029566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 74039566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 74049566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74059566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74069566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74079566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74084e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74099566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74109566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74114e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 74124e84afc0SStefano Zampini cp++; 74139566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 74149566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 74159566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 74169566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 74179566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 74189566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 74194e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 74209566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 74219566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 74224e84afc0SStefano Zampini rmapt[cp] = 2; 74234e84afc0SStefano Zampini rmapa[cp] = globidx; 74244e84afc0SStefano Zampini cmapt[cp] = 2; 74254e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 74264e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 74274e84afc0SStefano Zampini cp++; 74284e84afc0SStefano Zampini } 74294e84afc0SStefano Zampini break; 7430d71ae5a4SJacob Faibussowitsch default: 7431d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 74324e84afc0SStefano Zampini } 74334e84afc0SStefano Zampini /* sanity check */ 74349371c9d4SSatish Balay if (size > 1) 74359371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 74364e84afc0SStefano Zampini 74379566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7438ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7439ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7440ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7441ddea5d60SJunchao Zhang } 74424e84afc0SStefano Zampini mmdata->cp = cp; 74434e84afc0SStefano Zampini C->product->data = mmdata; 74444e84afc0SStefano Zampini C->product->destroy = MatDestroy_MatMatMPIAIJBACKEND; 74454e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 74464e84afc0SStefano Zampini 7447c215019aSStefano Zampini /* memory type */ 7448c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 74499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7450d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 74519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7452c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7453d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 74543214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7455c215019aSStefano Zampini 74564e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7457ddea5d60SJunchao Zhang 7458ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7459ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7460ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7461ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7462ddea5d60SJunchao Zhang */ 74634e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74644e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74654e84afc0SStefano Zampini if (mptmp[cp]) continue; 7466ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74674e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74684e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74694e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74704e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74714e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74724e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74734e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74744e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7475ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7476ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74774e84afc0SStefano Zampini } 74784e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74794e84afc0SStefano Zampini } 7480ddea5d60SJunchao Zhang 7481ddea5d60SJunchao Zhang /* 7482ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7483ddea5d60SJunchao Zhang 7484ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7485ddea5d60SJunchao Zhang 7486d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7487ddea5d60SJunchao Zhang 7488ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7489ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7490ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7491ddea5d60SJunchao Zhang 7492ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7493da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7494ddea5d60SJunchao Zhang */ 74959566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7497ddea5d60SJunchao Zhang 7498ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7499ddea5d60SJunchao Zhang if (hasoffproc) { 75004e84afc0SStefano Zampini PetscSF msf; 75014e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 75024e84afc0SStefano Zampini 75039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 75049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 75059566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7506ddea5d60SJunchao Zhang 75074e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 75084e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75094e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 75104e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7511ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 75124e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75134e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75144e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75154e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 75164e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 75174e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75184e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75194e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75204e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75214e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75224e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75234e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75244e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7525ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 75264e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 75274e84afc0SStefano Zampini *coi++ = gr; 75284e84afc0SStefano Zampini *idxoff++ = j; 75294e84afc0SStefano Zampini } 75304e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 75314e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75324e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75334e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 75344e84afc0SStefano Zampini } else { /* offdiag */ 75354e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75364e84afc0SStefano Zampini } 75374e84afc0SStefano Zampini ncoo_o += nz; 7538ddea5d60SJunchao Zhang } else { /* this is a local row */ 75394e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 75404e84afc0SStefano Zampini } 75414e84afc0SStefano Zampini } 75424e84afc0SStefano Zampini } 75434e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 75444e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 75454e84afc0SStefano Zampini } 75464e84afc0SStefano Zampini 75479566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75486497c311SBarry Smith PetscInt incoo_o; 75496497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 75506497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 75519566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 75529566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 75534e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 75549566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 75559566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 75569566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 75579566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75589566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 75599566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7560ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75619566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75624e84afc0SStefano Zampini coo_i = coo_i2; 75634e84afc0SStefano Zampini coo_j = coo_j2; 75644e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75654e84afc0SStefano Zampini ncoo = ncoo_d; 75669566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7567c215019aSStefano Zampini 75689566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75699566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75709566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75714e84afc0SStefano Zampini } 7572c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75734e84afc0SStefano Zampini 7574ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75754e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75764e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75774e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75784e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75794e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75804e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75814e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75824e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75834e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75844e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75854e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75864e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75874e84afc0SStefano Zampini 75884e84afc0SStefano Zampini if (mptmp[cp]) continue; 7589ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7590ddea5d60SJunchao Zhang /* fill coo_i */ 75914e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75924e84afc0SStefano Zampini const PetscInt gr = i + rs; 75934e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75944e84afc0SStefano Zampini } 7595ddea5d60SJunchao Zhang /* fill coo_j */ 7596ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7598ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7599ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7600ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76014e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 76024e84afc0SStefano Zampini } 76034e84afc0SStefano Zampini ncoo_d += mm->nz; 7604ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 76054e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 76064e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 76074e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 76084e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7609ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 76104e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7611ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 76124e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 76134e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 76144e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7615ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 76164e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 76174e84afc0SStefano Zampini } 76184e84afc0SStefano Zampini ncoo_d += nz; 76194e84afc0SStefano Zampini } 76204e84afc0SStefano Zampini } 76214e84afc0SStefano Zampini } 76224e84afc0SStefano Zampini } 762348a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 76249566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 762548a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 76269566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7627ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 76289566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 76294e84afc0SStefano Zampini 763039cfb508SMark Adams /* set block sizes */ 763139cfb508SMark Adams A = product->A; 763239cfb508SMark Adams P = product->B; 763339cfb508SMark Adams switch (ptype) { 763439cfb508SMark Adams case MATPRODUCT_PtAP: 7635*58b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs)); 763639cfb508SMark Adams break; 763739cfb508SMark Adams case MATPRODUCT_RARt: 7638*58b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs)); 763939cfb508SMark Adams break; 764039cfb508SMark Adams case MATPRODUCT_ABC: 764139cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, product->C)); 764239cfb508SMark Adams break; 764339cfb508SMark Adams case MATPRODUCT_AB: 764439cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, P)); 764539cfb508SMark Adams break; 764639cfb508SMark Adams case MATPRODUCT_AtB: 7647*58b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs)); 764839cfb508SMark Adams break; 764939cfb508SMark Adams case MATPRODUCT_ABt: 7650*58b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs)); 765139cfb508SMark Adams break; 765239cfb508SMark Adams default: 765339cfb508SMark Adams SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]); 765439cfb508SMark Adams } 765539cfb508SMark Adams 76564e84afc0SStefano Zampini /* preallocate with COO data */ 76579566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 76589566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 76593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 76604e84afc0SStefano Zampini } 76614e84afc0SStefano Zampini 7662d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7663d71ae5a4SJacob Faibussowitsch { 76644e84afc0SStefano Zampini Mat_Product *product = mat->product; 76654e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76664e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7667abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76684e84afc0SStefano Zampini #else 76694e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76704e84afc0SStefano Zampini #endif 76714e84afc0SStefano Zampini 76724e84afc0SStefano Zampini PetscFunctionBegin; 76734e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76744e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 767548a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 767665e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7677abb89eb1SStefano Zampini switch (product->type) { 7678abb89eb1SStefano Zampini case MATPRODUCT_AB: 7679abb89eb1SStefano Zampini if (product->api_user) { 7680d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76819566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7682d0609cedSBarry Smith PetscOptionsEnd(); 7683abb89eb1SStefano Zampini } else { 7684d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76859566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7686d0609cedSBarry Smith PetscOptionsEnd(); 7687abb89eb1SStefano Zampini } 7688abb89eb1SStefano Zampini break; 7689abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7690abb89eb1SStefano Zampini if (product->api_user) { 7691d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76929566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7693d0609cedSBarry Smith PetscOptionsEnd(); 7694abb89eb1SStefano Zampini } else { 7695d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76969566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7697d0609cedSBarry Smith PetscOptionsEnd(); 7698abb89eb1SStefano Zampini } 7699abb89eb1SStefano Zampini break; 7700abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7701abb89eb1SStefano Zampini if (product->api_user) { 7702d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 77039566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7704d0609cedSBarry Smith PetscOptionsEnd(); 7705abb89eb1SStefano Zampini } else { 7706d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 77079566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7708d0609cedSBarry Smith PetscOptionsEnd(); 7709abb89eb1SStefano Zampini } 7710abb89eb1SStefano Zampini break; 7711d71ae5a4SJacob Faibussowitsch default: 7712d71ae5a4SJacob Faibussowitsch break; 7713abb89eb1SStefano Zampini } 7714abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7715abb89eb1SStefano Zampini } 77164e84afc0SStefano Zampini #endif 77174e84afc0SStefano Zampini if (match) { 77184e84afc0SStefano Zampini switch (product->type) { 77194e84afc0SStefano Zampini case MATPRODUCT_AB: 77204e84afc0SStefano Zampini case MATPRODUCT_AtB: 7721d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7722d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7723d71ae5a4SJacob Faibussowitsch break; 7724d71ae5a4SJacob Faibussowitsch default: 7725d71ae5a4SJacob Faibussowitsch break; 77264e84afc0SStefano Zampini } 77274e84afc0SStefano Zampini } 77284e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 77299566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 77303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 773181824310SBarry Smith } 773298921bdaSJacob Faibussowitsch 773398921bdaSJacob Faibussowitsch /* 773472833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 773572833a62Smarkadams4 773672833a62Smarkadams4 n - the number of block indices in cc[] 773772833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 773872833a62Smarkadams4 */ 7739d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7740d71ae5a4SJacob Faibussowitsch { 774172833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 774272833a62Smarkadams4 const PetscInt *idx; 774372833a62Smarkadams4 774472833a62Smarkadams4 PetscFunctionBegin; 774572833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 774672833a62Smarkadams4 if (nidx) { 774772833a62Smarkadams4 cnt = 0; 774872833a62Smarkadams4 cc[cnt] = idx[0] / bs; 774972833a62Smarkadams4 for (j = 1; j < nidx; j++) { 775072833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 775172833a62Smarkadams4 } 775272833a62Smarkadams4 } 775372833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 775472833a62Smarkadams4 *n = cnt + 1; 77553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 775672833a62Smarkadams4 } 775772833a62Smarkadams4 775872833a62Smarkadams4 /* 775972833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 776072833a62Smarkadams4 776172833a62Smarkadams4 ncollapsed - the number of block indices 776272833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 776372833a62Smarkadams4 */ 7764d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7765d71ae5a4SJacob Faibussowitsch { 776672833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 776772833a62Smarkadams4 776872833a62Smarkadams4 PetscFunctionBegin; 776972833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 777072833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 777172833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 777272833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77739371c9d4SSatish Balay cprevtmp = cprev; 77749371c9d4SSatish Balay cprev = merged; 77759371c9d4SSatish Balay merged = cprevtmp; 777672833a62Smarkadams4 } 777772833a62Smarkadams4 *ncollapsed = nprev; 777872833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 778072833a62Smarkadams4 } 778172833a62Smarkadams4 77822d776b49SBarry Smith /* 778372833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 778472833a62Smarkadams4 778572833a62Smarkadams4 Input Parameter: 778672833a62Smarkadams4 . Amat - matrix 778772833a62Smarkadams4 - symmetrize - make the result symmetric 778872833a62Smarkadams4 + scale - scale with diagonal 778972833a62Smarkadams4 779072833a62Smarkadams4 Output Parameter: 779172833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 779272833a62Smarkadams4 779372833a62Smarkadams4 */ 7794e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7795d71ae5a4SJacob Faibussowitsch { 779672833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 779772833a62Smarkadams4 MPI_Comm comm; 779872833a62Smarkadams4 Mat Gmat; 779972833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 780072833a62Smarkadams4 Mat a, b, c; 780172833a62Smarkadams4 MatType jtype; 780272833a62Smarkadams4 780372833a62Smarkadams4 PetscFunctionBegin; 780472833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 780572833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 780672833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 780772833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 780872833a62Smarkadams4 nloc = (Iend - Istart) / bs; 780972833a62Smarkadams4 781072833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 781172833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 781272833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 781372833a62Smarkadams4 781472833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 781572833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 781672833a62Smarkadams4 implementation */ 781772833a62Smarkadams4 if (bs > 1) { 781872833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 781972833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 782072833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 782172833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 782272833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 782372833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 782472833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 78252cf69117Smarkadams4 MatScalar *aa, val, *AA; 78262cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 78276497c311SBarry Smith 78289371c9d4SSatish Balay if (isseqaij) { 78299371c9d4SSatish Balay a = Amat; 78309371c9d4SSatish Balay b = NULL; 78319371c9d4SSatish Balay } else { 783272833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 78339371c9d4SSatish Balay a = d->A; 78349371c9d4SSatish Balay b = d->B; 783572833a62Smarkadams4 } 783672833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 783732603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 783872833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 78392cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 784059ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 78416497c311SBarry Smith 784259ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 784359ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 784459ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 784559ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 784672833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 784759ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 784859ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 784959ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 785059ee9f9fSPierre Jolivet else { 785159ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 785259ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 785359ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 785472833a62Smarkadams4 } 785559ee9f9fSPierre Jolivet } 785659ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 785759ee9f9fSPierre Jolivet } 785859ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 785972833a62Smarkadams4 if (!ok) { 786072833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 786159ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 786272833a62Smarkadams4 goto old_bs; 786372833a62Smarkadams4 } 786472833a62Smarkadams4 } 786572833a62Smarkadams4 } 786672833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 786772833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 786872833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78692cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 787072833a62Smarkadams4 // diag 787172833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 787272833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 78736497c311SBarry Smith 787472833a62Smarkadams4 ai = aseq->i; 787572833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 787672833a62Smarkadams4 aj = aseq->j + ai[brow]; 78776497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 787872833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 787972833a62Smarkadams4 val = 0; 7880e02fb3cdSMark Adams if (index_size == 0) { 78816497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 788272833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 78836497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 788472833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 788572833a62Smarkadams4 } 788672833a62Smarkadams4 } 7887e02fb3cdSMark Adams } else { // use (index,index) value if provided 78886497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78896497c311SBarry Smith PetscInt ii = index[iii]; 7890e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 78916497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 78926497c311SBarry Smith PetscInt jj = index[jjj]; 7893cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7894e02fb3cdSMark Adams } 7895e02fb3cdSMark Adams } 7896e02fb3cdSMark Adams } 7897835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 789872833a62Smarkadams4 AA[k / bs] = val; 789972833a62Smarkadams4 } 790072833a62Smarkadams4 grow = Istart / bs + brow / bs; 790166521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 790272833a62Smarkadams4 } 790372833a62Smarkadams4 // off-diag 790472833a62Smarkadams4 if (ismpiaij) { 790572833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 790672833a62Smarkadams4 const PetscScalar *vals; 790772833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 79086497c311SBarry Smith 790972833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 791072833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 791172833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 79126497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 791359ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 791472833a62Smarkadams4 AA[k / bs] = 0; 791572833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 791672833a62Smarkadams4 } 791772833a62Smarkadams4 nc = ncols / bs; 791872833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7919e02fb3cdSMark Adams if (index_size == 0) { 79206497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 792172833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79226497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79236497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 7924835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 792572833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 792672833a62Smarkadams4 } 792772833a62Smarkadams4 } 792872833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 792972833a62Smarkadams4 } 7930e02fb3cdSMark Adams } else { // use (index,index) value if provided 79316497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 79326497c311SBarry Smith PetscInt ii = index[iii]; 7933e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 79346497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 79356497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 79366497c311SBarry Smith PetscInt jj = index[jjj]; 7937e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7938e02fb3cdSMark Adams } 7939e02fb3cdSMark Adams } 7940e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7941e02fb3cdSMark Adams } 7942e02fb3cdSMark Adams } 794372833a62Smarkadams4 grow = Istart / bs + brow / bs; 794466521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 794572833a62Smarkadams4 } 794672833a62Smarkadams4 } 794772833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 794872833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 79492cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 795072833a62Smarkadams4 } else { 795172833a62Smarkadams4 const PetscScalar *vals; 795272833a62Smarkadams4 const PetscInt *idx; 795372833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 795472833a62Smarkadams4 old_bs: 795572833a62Smarkadams4 /* 795672833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 795772833a62Smarkadams4 */ 795872833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 795932603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 796072833a62Smarkadams4 if (isseqaij) { 796172833a62Smarkadams4 PetscInt max_d_nnz; 79626497c311SBarry Smith 796372833a62Smarkadams4 /* 796472833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 796572833a62Smarkadams4 */ 796672833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 796772833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 796872833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 796948a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 797072833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 797172833a62Smarkadams4 } else if (ismpiaij) { 797272833a62Smarkadams4 Mat Daij, Oaij; 797372833a62Smarkadams4 const PetscInt *garray; 797472833a62Smarkadams4 PetscInt max_d_nnz; 79756497c311SBarry Smith 797672833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 797772833a62Smarkadams4 /* 797872833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 797972833a62Smarkadams4 */ 798072833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 798172833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 798272833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 798348a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 798472833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 798572833a62Smarkadams4 /* 798672833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 798772833a62Smarkadams4 */ 798872833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 798972833a62Smarkadams4 o_nnz[jj] = 0; 799072833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 799172833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 799272833a62Smarkadams4 o_nnz[jj] += ncols; 799372833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 799472833a62Smarkadams4 } 799572833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 799672833a62Smarkadams4 } 799772833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 799872833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 799972833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 800072833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 800172833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 800272833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 800372833a62Smarkadams4 PetscInt dest_row = Ii / bs; 80046497c311SBarry Smith 800572833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 800672833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 800772833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 800872833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 80096497c311SBarry Smith 801072833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 801172833a62Smarkadams4 } 801272833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 801372833a62Smarkadams4 } 801472833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 801572833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 801672833a62Smarkadams4 } 801772833a62Smarkadams4 } else { 80182d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 80192d776b49SBarry Smith else { 80202d776b49SBarry Smith Gmat = Amat; 80212d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 80222d776b49SBarry Smith } 80239371c9d4SSatish Balay if (isseqaij) { 80249371c9d4SSatish Balay a = Gmat; 80259371c9d4SSatish Balay b = NULL; 80269371c9d4SSatish Balay } else { 802772833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 80289371c9d4SSatish Balay a = d->A; 80299371c9d4SSatish Balay b = d->B; 803072833a62Smarkadams4 } 80312d776b49SBarry Smith if (filter >= 0 || scale) { 80322d776b49SBarry Smith /* take absolute value of each entry */ 803372833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 803472833a62Smarkadams4 MatInfo info; 803572833a62Smarkadams4 PetscScalar *avals; 80366497c311SBarry Smith 803772833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 803872833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 803972833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 804072833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 804172833a62Smarkadams4 } 804272833a62Smarkadams4 } 80432d776b49SBarry Smith } 804472833a62Smarkadams4 if (symmetrize) { 8045b94d7dedSBarry Smith PetscBool isset, issym; 80466497c311SBarry Smith 8047b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 8048b94d7dedSBarry Smith if (!isset || !issym) { 804972833a62Smarkadams4 Mat matTrans; 80506497c311SBarry Smith 805172833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 80521fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 805372833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 805472833a62Smarkadams4 } 805572833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 80562d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 805772833a62Smarkadams4 if (scale) { 805872833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 805972833a62Smarkadams4 Vec diag; 80606497c311SBarry Smith 806172833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 806272833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 806372833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 806472833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 806572833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 806672833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 806772833a62Smarkadams4 } 806872833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80692d776b49SBarry Smith if (filter >= 0) { 80702ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80712ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80722d776b49SBarry Smith } 807372833a62Smarkadams4 *a_Gmat = Gmat; 80743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 807572833a62Smarkadams4 } 807672833a62Smarkadams4 807772833a62Smarkadams4 /* 807898921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 807998921bdaSJacob Faibussowitsch */ 808098921bdaSJacob Faibussowitsch 808198921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80829566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80839566063dSJacob Faibussowitsch #undef PetscCall 80849371c9d4SSatish Balay #define PetscCall(...) \ 80859371c9d4SSatish Balay do { \ 80865f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 808798921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 808898921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 808998921bdaSJacob Faibussowitsch return; \ 809098921bdaSJacob Faibussowitsch } \ 809198921bdaSJacob Faibussowitsch } while (0) 809298921bdaSJacob Faibussowitsch 809398921bdaSJacob Faibussowitsch #undef SETERRQ 80949371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80959371c9d4SSatish Balay do { \ 809698921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 809798921bdaSJacob Faibussowitsch return; \ 809898921bdaSJacob Faibussowitsch } while (0) 809998921bdaSJacob Faibussowitsch 810098921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 810198921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 810298921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 810398921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 810498921bdaSJacob Faibussowitsch #else 810598921bdaSJacob Faibussowitsch #endif 8106d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8107d71ae5a4SJacob Faibussowitsch { 810898921bdaSJacob Faibussowitsch Mat mat = *mmat; 810998921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 811098921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 811198921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 811298921bdaSJacob Faibussowitsch PetscScalar value; 811398921bdaSJacob Faibussowitsch 811498921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 811598921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 81165f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 811798921bdaSJacob Faibussowitsch { 811898921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 811998921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 812098921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 812198921bdaSJacob Faibussowitsch 812298921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 812398921bdaSJacob Faibussowitsch Mat A = aij->A; 812498921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 812598921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 812698921bdaSJacob Faibussowitsch MatScalar *aa; 8127f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 812898921bdaSJacob Faibussowitsch Mat B = aij->B; 812998921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 813098921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 813198921bdaSJacob Faibussowitsch MatScalar *ba; 813298921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 813398921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 813498921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 813598921bdaSJacob Faibussowitsch 813698921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 813798921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 813898921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 813998921bdaSJacob Faibussowitsch 814098921bdaSJacob Faibussowitsch PetscFunctionBegin; 81419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 81429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 814398921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 814498921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 81456bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 814698921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 814798921bdaSJacob Faibussowitsch row = im[i] - rstart; 814898921bdaSJacob Faibussowitsch lastcol1 = -1; 814998921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 815098921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 815198921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 815298921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 815398921bdaSJacob Faibussowitsch low1 = 0; 815498921bdaSJacob Faibussowitsch high1 = nrow1; 815598921bdaSJacob Faibussowitsch lastcol2 = -1; 815698921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 815798921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 815898921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 815998921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 816098921bdaSJacob Faibussowitsch low2 = 0; 816198921bdaSJacob Faibussowitsch high2 = nrow2; 816298921bdaSJacob Faibussowitsch 816398921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 816498921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 816598921bdaSJacob Faibussowitsch else value = v[i + j * m]; 816698921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 816798921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 816898921bdaSJacob Faibussowitsch col = in[j] - cstart; 816998921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 817098921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 817198921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 817263a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 817398921bdaSJacob Faibussowitsch } else { 817498921bdaSJacob Faibussowitsch if (mat->was_assembled) { 817548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 817698921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8177eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 817898921bdaSJacob Faibussowitsch col--; 817998921bdaSJacob Faibussowitsch #else 818098921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 818198921bdaSJacob Faibussowitsch #endif 8182f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 8183eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 818498921bdaSJacob Faibussowitsch col = in[j]; 818598921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 818698921bdaSJacob Faibussowitsch B = aij->B; 818798921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81889371c9d4SSatish Balay bimax = b->imax; 81899371c9d4SSatish Balay bi = b->i; 81909371c9d4SSatish Balay bilen = b->ilen; 81919371c9d4SSatish Balay bj = b->j; 819298921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 819398921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 819498921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 819598921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 819698921bdaSJacob Faibussowitsch low2 = 0; 819798921bdaSJacob Faibussowitsch high2 = nrow2; 819898921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 819998921bdaSJacob Faibussowitsch ba = b->a; 820098921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 820198921bdaSJacob Faibussowitsch } 820298921bdaSJacob Faibussowitsch } else col = in[j]; 820398921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 820498921bdaSJacob Faibussowitsch } 820598921bdaSJacob Faibussowitsch } 820698921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 820798921bdaSJacob Faibussowitsch if (roworiented) { 82089566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 820998921bdaSJacob Faibussowitsch } else { 82109566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 821198921bdaSJacob Faibussowitsch } 821298921bdaSJacob Faibussowitsch } 821398921bdaSJacob Faibussowitsch } 82149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 82159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 821698921bdaSJacob Faibussowitsch } 821798921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 821898921bdaSJacob Faibussowitsch } 821972833a62Smarkadams4 822098921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 822198921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 822298921bdaSJacob Faibussowitsch * original definitions */ 82239566063dSJacob Faibussowitsch #undef PetscCall 822498921bdaSJacob Faibussowitsch #undef SETERRQ 8225