xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 5a884c48ab0c46bab83cd9bb8710f380fa6d8bcf)
1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/
2af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
4af0996ceSBarry Smith #include <petsc/private/isimpl.h>
5c6db04a5SJed Brown #include <petscblaslapack.h>
60c312b8eSJed Brown #include <petscsf.h>
7bc8e477aSFande Kong #include <petsc/private/hashmapi.h>
88a729477SBarry Smith 
9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */
10674b392bSAlexander #define TYPE AIJ
11674b392bSAlexander #define TYPE_AIJ
12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h"
13674b392bSAlexander #undef TYPE
14674b392bSAlexander #undef TYPE_AIJ
15674b392bSAlexander 
16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat)
1726cec326SBarry Smith {
1826cec326SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1926cec326SBarry Smith 
2026cec326SBarry Smith   PetscFunctionBegin;
2126cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
2226cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
2326cec326SBarry Smith   PetscCall(VecDestroy(&aij->diag));
2426cec326SBarry Smith   PetscCall(MatDestroy(&aij->A));
2526cec326SBarry Smith   PetscCall(MatDestroy(&aij->B));
2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2726cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&aij->colmap));
2826cec326SBarry Smith #else
2926cec326SBarry Smith   PetscCall(PetscFree(aij->colmap));
3026cec326SBarry Smith #endif
3126cec326SBarry Smith   PetscCall(PetscFree(aij->garray));
3226cec326SBarry Smith   PetscCall(VecDestroy(&aij->lvec));
3326cec326SBarry Smith   PetscCall(VecScatterDestroy(&aij->Mvctx));
3426cec326SBarry Smith   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
3526cec326SBarry Smith   PetscCall(PetscFree(aij->ld));
36674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
37674b392bSAlexander }
38674b392bSAlexander 
39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat)
40674b392bSAlexander {
41674b392bSAlexander   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
42674b392bSAlexander   /* Save the nonzero states of the component matrices because those are what are used to determine
43674b392bSAlexander     the nonzero state of mat */
44674b392bSAlexander   PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate;
45674b392bSAlexander 
46674b392bSAlexander   PetscFunctionBegin;
47674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
48674b392bSAlexander   PetscCall(MatSetUp_MPI_Hash(mat));
49674b392bSAlexander   aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate;
50674b392bSAlexander   PetscFunctionReturn(PETSC_SUCCESS);
51674b392bSAlexander }
52674b392bSAlexander 
53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat)
54674b392bSAlexander {
55674b392bSAlexander   PetscFunctionBegin;
56674b392bSAlexander   PetscCall(MatReset_MPIAIJ(mat));
5726cec326SBarry Smith 
5826cec326SBarry Smith   PetscCall(PetscFree(mat->data));
5926cec326SBarry Smith 
6026cec326SBarry Smith   /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */
6126cec326SBarry Smith   PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL));
6226cec326SBarry Smith 
6326cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
6426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
6526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
6626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL));
6726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL));
6826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL));
69674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL));
7026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL));
7126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
7226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL));
7326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL));
7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA)
7526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL));
7626cec326SBarry Smith #endif
7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP)
7826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL));
7926cec326SBarry Smith #endif
8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS)
8126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL));
8226cec326SBarry Smith #endif
8326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL));
8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL)
8526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL));
8626cec326SBarry Smith #endif
87d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
8826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL));
8926cec326SBarry Smith #endif
9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
9126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL));
9226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL));
9326cec326SBarry Smith #endif
9426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
9526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL));
9626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL));
9726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL));
9826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL));
9926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL));
10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE)
10126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL));
10226cec326SBarry Smith #endif
10326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL));
10426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL));
10526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL));
10626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL));
10726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL));
10826cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
10926cec326SBarry Smith }
11026cec326SBarry Smith 
111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
112d71ae5a4SJacob Faibussowitsch {
1138a9c020eSBarry Smith   Mat B;
1148a9c020eSBarry Smith 
1158a9c020eSBarry Smith   PetscFunctionBegin;
1168a9c020eSBarry Smith   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B));
1178a9c020eSBarry Smith   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B));
1188a9c020eSBarry Smith   PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
119501b8e33SLisandro Dalcin   PetscCall(MatDestroy(&B));
1203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1218a9c020eSBarry Smith }
1228a9c020eSBarry Smith 
123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done)
124d71ae5a4SJacob Faibussowitsch {
1258a9c020eSBarry Smith   Mat B;
1268a9c020eSBarry Smith 
1278a9c020eSBarry Smith   PetscFunctionBegin;
1288a9c020eSBarry Smith   PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B));
1298a9c020eSBarry Smith   PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done));
130501b8e33SLisandro Dalcin   PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL));
1313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1328a9c020eSBarry Smith }
1338a9c020eSBarry Smith 
13401bebe75SBarry Smith /*MC
13501bebe75SBarry Smith    MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices.
13601bebe75SBarry Smith 
13711a5261eSBarry Smith    This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator,
13811a5261eSBarry Smith    and `MATMPIAIJ` otherwise.  As a result, for single process communicators,
13911a5261eSBarry Smith   `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
14001bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
14101bebe75SBarry Smith   the above preallocation routines for simplicity.
14201bebe75SBarry Smith 
14327430b45SBarry Smith    Options Database Key:
14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()`
14501bebe75SBarry Smith 
14611a5261eSBarry Smith   Developer Note:
1472ef1f0ffSBarry Smith   Level: beginner
1482ef1f0ffSBarry Smith 
14911a5261eSBarry Smith     Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when
15001bebe75SBarry Smith    enough exist.
15101bebe75SBarry Smith 
1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ`
15301bebe75SBarry Smith M*/
15401bebe75SBarry Smith 
15501bebe75SBarry Smith /*MC
15601bebe75SBarry Smith    MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices.
15701bebe75SBarry Smith 
15811a5261eSBarry Smith    This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator,
15911a5261eSBarry Smith    and `MATMPIAIJCRL` otherwise.  As a result, for single process communicators,
16011a5261eSBarry Smith    `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported
16101bebe75SBarry Smith   for communicators controlling multiple processes.  It is recommended that you call both of
16201bebe75SBarry Smith   the above preallocation routines for simplicity.
16301bebe75SBarry Smith 
16427430b45SBarry Smith    Options Database Key:
16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()`
16601bebe75SBarry Smith 
16701bebe75SBarry Smith   Level: beginner
16801bebe75SBarry Smith 
1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`
17001bebe75SBarry Smith M*/
17101bebe75SBarry Smith 
172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg)
173d71ae5a4SJacob Faibussowitsch {
174f74ef234SStefano Zampini   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
175f74ef234SStefano Zampini 
176f74ef234SStefano Zampini   PetscFunctionBegin;
177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL)
178b470e4b4SRichard Tran Mills   A->boundtocpu = flg;
179f74ef234SStefano Zampini #endif
1801baa6e33SBarry Smith   if (a->A) PetscCall(MatBindToCPU(a->A, flg));
1811baa6e33SBarry Smith   if (a->B) PetscCall(MatBindToCPU(a->B, flg));
1823120d049SRichard Tran Mills 
1833120d049SRichard Tran Mills   /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products.
1843120d049SRichard Tran Mills    * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors
1853120d049SRichard Tran Mills    * to differ from the parent matrix. */
1861baa6e33SBarry Smith   if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg));
1871baa6e33SBarry Smith   if (a->diag) PetscCall(VecBindToCPU(a->diag, flg));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189f74ef234SStefano Zampini }
190f74ef234SStefano Zampini 
191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs)
192d71ae5a4SJacob Faibussowitsch {
19326bda2c4Sstefano_zampini   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data;
19426bda2c4Sstefano_zampini 
19526bda2c4Sstefano_zampini   PetscFunctionBegin;
19646533700Sstefano_zampini   if (mat->A) {
1979566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->A, rbs, cbs));
1989566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(mat->B, rbs, 1));
19946533700Sstefano_zampini   }
2003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20126bda2c4Sstefano_zampini }
20226bda2c4Sstefano_zampini 
203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows)
204d71ae5a4SJacob Faibussowitsch {
20527d4218bSShri Abhyankar   Mat_MPIAIJ      *mat = (Mat_MPIAIJ *)M->data;
20627d4218bSShri Abhyankar   Mat_SeqAIJ      *a   = (Mat_SeqAIJ *)mat->A->data;
20727d4218bSShri Abhyankar   Mat_SeqAIJ      *b   = (Mat_SeqAIJ *)mat->B->data;
20827d4218bSShri Abhyankar   const PetscInt  *ia, *ib;
209ce496241SStefano Zampini   const MatScalar *aa, *bb, *aav, *bav;
21027d4218bSShri Abhyankar   PetscInt         na, nb, i, j, *rows, cnt = 0, n0rows;
21127d4218bSShri Abhyankar   PetscInt         m = M->rmap->n, rstart = M->rmap->rstart;
21227d4218bSShri Abhyankar 
21327d4218bSShri Abhyankar   PetscFunctionBegin;
214f4259b30SLisandro Dalcin   *keptrows = NULL;
215ce496241SStefano Zampini 
21627d4218bSShri Abhyankar   ia = a->i;
21727d4218bSShri Abhyankar   ib = b->i;
2189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav));
2199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav));
22027d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
22127d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
22227d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
22327d4218bSShri Abhyankar     if (!na && !nb) {
22427d4218bSShri Abhyankar       cnt++;
22527d4218bSShri Abhyankar       goto ok1;
22627d4218bSShri Abhyankar     }
227ce496241SStefano Zampini     aa = aav + ia[i];
22827d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
22927d4218bSShri Abhyankar       if (aa[j] != 0.0) goto ok1;
23027d4218bSShri Abhyankar     }
2318e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
23227d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
23327d4218bSShri Abhyankar       if (bb[j] != 0.0) goto ok1;
23427d4218bSShri Abhyankar     }
23527d4218bSShri Abhyankar     cnt++;
23627d4218bSShri Abhyankar   ok1:;
23727d4218bSShri Abhyankar   }
238462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M)));
239ce496241SStefano Zampini   if (!n0rows) {
2409566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2419566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
243ce496241SStefano Zampini   }
2449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows));
24527d4218bSShri Abhyankar   cnt = 0;
24627d4218bSShri Abhyankar   for (i = 0; i < m; i++) {
24727d4218bSShri Abhyankar     na = ia[i + 1] - ia[i];
24827d4218bSShri Abhyankar     nb = ib[i + 1] - ib[i];
24927d4218bSShri Abhyankar     if (!na && !nb) continue;
250ce496241SStefano Zampini     aa = aav + ia[i];
25127d4218bSShri Abhyankar     for (j = 0; j < na; j++) {
25227d4218bSShri Abhyankar       if (aa[j] != 0.0) {
25327d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
25427d4218bSShri Abhyankar         goto ok2;
25527d4218bSShri Abhyankar       }
25627d4218bSShri Abhyankar     }
2578e3a54c0SPierre Jolivet     bb = PetscSafePointerPlusOffset(bav, ib[i]);
25827d4218bSShri Abhyankar     for (j = 0; j < nb; j++) {
25927d4218bSShri Abhyankar       if (bb[j] != 0.0) {
26027d4218bSShri Abhyankar         rows[cnt++] = rstart + i;
26127d4218bSShri Abhyankar         goto ok2;
26227d4218bSShri Abhyankar       }
26327d4218bSShri Abhyankar     }
26427d4218bSShri Abhyankar   ok2:;
26527d4218bSShri Abhyankar   }
2669566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows));
2679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav));
2689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav));
2693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
27027d4218bSShri Abhyankar }
27127d4218bSShri Abhyankar 
272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is)
273d71ae5a4SJacob Faibussowitsch {
27499e65526SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data;
27594342113SStefano Zampini   PetscBool   cong;
27699e65526SBarry Smith 
27799e65526SBarry Smith   PetscFunctionBegin;
2789566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(Y, &cong));
27994342113SStefano Zampini   if (Y->assembled && cong) {
2809566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet(aij->A, D, is));
28199e65526SBarry Smith   } else {
2829566063dSJacob Faibussowitsch     PetscCall(MatDiagonalSet_Default(Y, D, is));
28399e65526SBarry Smith   }
2843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28599e65526SBarry Smith }
28699e65526SBarry Smith 
287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows)
288d71ae5a4SJacob Faibussowitsch {
289f1f41ecbSJed Brown   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data;
290f1f41ecbSJed Brown   PetscInt    i, rstart, nrows, *rows;
291f1f41ecbSJed Brown 
292f1f41ecbSJed Brown   PetscFunctionBegin;
2930298fd71SBarry Smith   *zrows = NULL;
2949566063dSJacob Faibussowitsch   PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows));
2959566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
296f1f41ecbSJed Brown   for (i = 0; i < nrows; i++) rows[i] += rstart;
2979566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows));
2983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
299f1f41ecbSJed Brown }
300f1f41ecbSJed Brown 
301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions)
302d71ae5a4SJacob Faibussowitsch {
3030716a85fSBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
304a873a8cdSSam Reynolds   PetscInt           i, m, n, *garray = aij->garray;
3050716a85fSBarry Smith   Mat_SeqAIJ        *a_aij = (Mat_SeqAIJ *)aij->A->data;
3060716a85fSBarry Smith   Mat_SeqAIJ        *b_aij = (Mat_SeqAIJ *)aij->B->data;
3070716a85fSBarry Smith   PetscReal         *work;
308ce496241SStefano Zampini   const PetscScalar *dummy;
3090716a85fSBarry Smith 
3100716a85fSBarry Smith   PetscFunctionBegin;
3119566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
3129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n, &work));
3139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy));
3149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy));
3159566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy));
3169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy));
317857cbf51SRichard Tran Mills   if (type == NORM_2) {
318ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]);
319ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]);
320857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
321ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]);
322ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]);
323857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
324ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]);
325ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]);
326857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
327ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]);
328ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]);
329857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
330ad540459SPierre Jolivet     for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]);
331ad540459SPierre Jolivet     for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]);
332857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
333857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
334e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
3350716a85fSBarry Smith   } else {
336e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
3370716a85fSBarry Smith   }
3389566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
339857cbf51SRichard Tran Mills   if (type == NORM_2) {
340a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
341857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
342a873a8cdSSam Reynolds     for (i = 0; i < n; i++) reductions[i] /= m;
3430716a85fSBarry Smith   }
3443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3450716a85fSBarry Smith }
3460716a85fSBarry Smith 
347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is)
348d71ae5a4SJacob Faibussowitsch {
349e52d2c62SBarry Smith   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)A->data;
350e52d2c62SBarry Smith   IS              sis, gis;
351e52d2c62SBarry Smith   const PetscInt *isis, *igis;
352e52d2c62SBarry Smith   PetscInt        n, *iis, nsis, ngis, rstart, i;
353e52d2c62SBarry Smith 
354e52d2c62SBarry Smith   PetscFunctionBegin;
3559566063dSJacob Faibussowitsch   PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis));
3569566063dSJacob Faibussowitsch   PetscCall(MatFindNonzeroRows(a->B, &gis));
3579566063dSJacob Faibussowitsch   PetscCall(ISGetSize(gis, &ngis));
3589566063dSJacob Faibussowitsch   PetscCall(ISGetSize(sis, &nsis));
3599566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(sis, &isis));
3609566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(gis, &igis));
361e52d2c62SBarry Smith 
3629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ngis + nsis, &iis));
3639566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis, igis, ngis));
3649566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(iis + ngis, isis, nsis));
365e52d2c62SBarry Smith   n = ngis + nsis;
3669566063dSJacob Faibussowitsch   PetscCall(PetscSortRemoveDupsInt(&n, iis));
3679566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
368e52d2c62SBarry Smith   for (i = 0; i < n; i++) iis[i] += rstart;
3699566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is));
370e52d2c62SBarry Smith 
3719566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(sis, &isis));
3729566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(gis, &igis));
3739566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&sis));
3749566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&gis));
3753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
376e52d2c62SBarry Smith }
377e52d2c62SBarry Smith 
378dd6ea824SBarry Smith /*
3790f5bd95cSBarry Smith   Local utility routine that creates a mapping from the global column
3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
3810f5bd95cSBarry Smith storage of the matrix.  When PETSC_USE_CTABLE is used this is scalable at
3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor
38372fa4726SStefano Zampini has an order N integer array but is fast to access.
3849e25ed09SBarry Smith */
385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat)
386d71ae5a4SJacob Faibussowitsch {
38744a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
388d0f46423SBarry Smith   PetscInt    n   = aij->B->cmap->n, i;
389dbb450caSBarry Smith 
3903a40ed3dSBarry Smith   PetscFunctionBegin;
39108401ef6SPierre Jolivet   PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray");
392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
393eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(n, &aij->colmap));
394c76ffc5fSJacob Faibussowitsch   for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1));
395b1fc9764SSatish Balay #else
3969566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap));
397905e6a2fSBarry Smith   for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1;
398b1fc9764SSatish Balay #endif
3993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4009e25ed09SBarry Smith }
4019e25ed09SBarry Smith 
402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \
403a8f51744SPierre Jolivet   do { \
404db4deed7SKarl Rupp     if (col <= lastcol1) low1 = 0; \
405db4deed7SKarl Rupp     else high1 = nrow1; \
406fd3458f5SBarry Smith     lastcol1 = col; \
407fd3458f5SBarry Smith     while (high1 - low1 > 5) { \
408fd3458f5SBarry Smith       t = (low1 + high1) / 2; \
409fd3458f5SBarry Smith       if (rp1[t] > col) high1 = t; \
410fd3458f5SBarry Smith       else low1 = t; \
411ba4e3ef2SSatish Balay     } \
412fd3458f5SBarry Smith     for (_i = low1; _i < high1; _i++) { \
413fd3458f5SBarry Smith       if (rp1[_i] > col) break; \
414fd3458f5SBarry Smith       if (rp1[_i] == col) { \
4150c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4160c0d7e18SFande Kong           ap1[_i] += value; \
4179680b7ceSStefano Zampini           /* Not sure LogFlops will slow down the code or not */ \
4180c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4199371c9d4SSatish Balay         } else ap1[_i] = value; \
42030770e4dSSatish Balay         goto a_noinsert; \
4210520107fSSatish Balay       } \
4220520107fSSatish Balay     } \
4239371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries && row != col) { \
4249371c9d4SSatish Balay       low1  = 0; \
4259371c9d4SSatish Balay       high1 = nrow1; \
4269371c9d4SSatish Balay       goto a_noinsert; \
4279371c9d4SSatish Balay     } \
4289371c9d4SSatish Balay     if (nonew == 1) { \
4299371c9d4SSatish Balay       low1  = 0; \
4309371c9d4SSatish Balay       high1 = nrow1; \
4319371c9d4SSatish Balay       goto a_noinsert; \
4329371c9d4SSatish Balay     } \
43308401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
434fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \
4359371c9d4SSatish Balay     N = nrow1++ - 1; \
4369371c9d4SSatish Balay     a->nz++; \
4379371c9d4SSatish Balay     high1++; \
4380520107fSSatish Balay     /* shift up all the later entries in this row */ \
4399566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \
4409566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \
441fd3458f5SBarry Smith     rp1[_i] = col; \
442fd3458f5SBarry Smith     ap1[_i] = value; \
44330770e4dSSatish Balay   a_noinsert:; \
444fd3458f5SBarry Smith     ailen[row] = nrow1; \
445a8f51744SPierre Jolivet   } while (0)
4460a198c4cSBarry Smith 
447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \
448a8f51744SPierre Jolivet   do { \
449db4deed7SKarl Rupp     if (col <= lastcol2) low2 = 0; \
450db4deed7SKarl Rupp     else high2 = nrow2; \
451fd3458f5SBarry Smith     lastcol2 = col; \
452fd3458f5SBarry Smith     while (high2 - low2 > 5) { \
453fd3458f5SBarry Smith       t = (low2 + high2) / 2; \
454fd3458f5SBarry Smith       if (rp2[t] > col) high2 = t; \
455fd3458f5SBarry Smith       else low2 = t; \
456ba4e3ef2SSatish Balay     } \
457fd3458f5SBarry Smith     for (_i = low2; _i < high2; _i++) { \
458fd3458f5SBarry Smith       if (rp2[_i] > col) break; \
459fd3458f5SBarry Smith       if (rp2[_i] == col) { \
4600c0d7e18SFande Kong         if (addv == ADD_VALUES) { \
4610c0d7e18SFande Kong           ap2[_i] += value; \
4620c0d7e18SFande Kong           (void)PetscLogFlops(1.0); \
4639371c9d4SSatish Balay         } else ap2[_i] = value; \
46430770e4dSSatish Balay         goto b_noinsert; \
46530770e4dSSatish Balay       } \
46630770e4dSSatish Balay     } \
4679371c9d4SSatish Balay     if (value == 0.0 && ignorezeroentries) { \
4689371c9d4SSatish Balay       low2  = 0; \
4699371c9d4SSatish Balay       high2 = nrow2; \
4709371c9d4SSatish Balay       goto b_noinsert; \
4719371c9d4SSatish Balay     } \
4729371c9d4SSatish Balay     if (nonew == 1) { \
4739371c9d4SSatish Balay       low2  = 0; \
4749371c9d4SSatish Balay       high2 = nrow2; \
4759371c9d4SSatish Balay       goto b_noinsert; \
4769371c9d4SSatish Balay     } \
47708401ef6SPierre Jolivet     PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
478fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \
4799371c9d4SSatish Balay     N = nrow2++ - 1; \
4809371c9d4SSatish Balay     b->nz++; \
4819371c9d4SSatish Balay     high2++; \
48230770e4dSSatish Balay     /* shift up all the later entries in this row */ \
4839566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \
4849566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \
485fd3458f5SBarry Smith     rp2[_i] = col; \
486fd3458f5SBarry Smith     ap2[_i] = value; \
48730770e4dSSatish Balay   b_noinsert:; \
488fd3458f5SBarry Smith     bilen[row] = nrow2; \
489a8f51744SPierre Jolivet   } while (0)
49030770e4dSSatish Balay 
491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[])
492d71ae5a4SJacob Faibussowitsch {
4932fd7e33dSBarry Smith   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)A->data;
4942fd7e33dSBarry Smith   Mat_SeqAIJ  *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data;
4952fd7e33dSBarry Smith   PetscInt     l, *garray                         = mat->garray, diag;
496fff043a9SJunchao Zhang   PetscScalar *aa, *ba;
4972fd7e33dSBarry Smith 
4982fd7e33dSBarry Smith   PetscFunctionBegin;
4992fd7e33dSBarry Smith   /* code only works for square matrices A */
5002fd7e33dSBarry Smith 
5012fd7e33dSBarry Smith   /* find size of row to the left of the diagonal part */
5029566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(A, &diag, NULL));
5032fd7e33dSBarry Smith   row = row - diag;
5042fd7e33dSBarry Smith   for (l = 0; l < b->i[row + 1] - b->i[row]; l++) {
5052fd7e33dSBarry Smith     if (garray[b->j[b->i[row] + l]] > diag) break;
5062fd7e33dSBarry Smith   }
507fff043a9SJunchao Zhang   if (l) {
5089566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5099566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row], v, l));
5109566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
511fff043a9SJunchao Zhang   }
5122fd7e33dSBarry Smith 
5132fd7e33dSBarry Smith   /* diagonal part */
514fff043a9SJunchao Zhang   if (a->i[row + 1] - a->i[row]) {
5159566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->A, &aa));
51657508eceSPierre Jolivet     PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row]));
5179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->A, &aa));
518fff043a9SJunchao Zhang   }
5192fd7e33dSBarry Smith 
5202fd7e33dSBarry Smith   /* right of diagonal part */
521fff043a9SJunchao Zhang   if (b->i[row + 1] - b->i[row] - l) {
5229566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(mat->B, &ba));
5239566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l));
5249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(mat->B, &ba));
525fff043a9SJunchao Zhang   }
5263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5272fd7e33dSBarry Smith }
5282fd7e33dSBarry Smith 
529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
530d71ae5a4SJacob Faibussowitsch {
53144a69424SLois Curfman McInnes   Mat_MPIAIJ *aij   = (Mat_MPIAIJ *)mat->data;
532071fcb05SBarry Smith   PetscScalar value = 0.0;
533d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
534d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
535ace3abfcSBarry Smith   PetscBool   roworiented = aij->roworiented;
5368a729477SBarry Smith 
5370520107fSSatish Balay   /* Some Variables required in the macro */
5384ee7247eSSatish Balay   Mat         A     = aij->A;
5394ee7247eSSatish Balay   Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
54057809a77SBarry Smith   PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
541ace3abfcSBarry Smith   PetscBool   ignorezeroentries = a->ignorezeroentries;
54230770e4dSSatish Balay   Mat         B                 = aij->B;
54330770e4dSSatish Balay   Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
544d0f46423SBarry Smith   PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
545ce496241SStefano Zampini   MatScalar  *aa, *ba;
546fd3458f5SBarry Smith   PetscInt   *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
5478d76821aSHong Zhang   PetscInt    nonew;
548a77337e4SBarry Smith   MatScalar  *ap1, *ap2;
5494ee7247eSSatish Balay 
5503a40ed3dSBarry Smith   PetscFunctionBegin;
5519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &aa));
5529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &ba));
5538a729477SBarry Smith   for (i = 0; i < m; i++) {
5545ef9f2a5SBarry Smith     if (im[i] < 0) continue;
55508401ef6SPierre Jolivet     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
5564b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
5574b0e389bSBarry Smith       row      = im[i] - rstart;
558fd3458f5SBarry Smith       lastcol1 = -1;
5598e3a54c0SPierre Jolivet       rp1      = PetscSafePointerPlusOffset(aj, ai[row]);
5608e3a54c0SPierre Jolivet       ap1      = PetscSafePointerPlusOffset(aa, ai[row]);
561fd3458f5SBarry Smith       rmax1    = aimax[row];
562fd3458f5SBarry Smith       nrow1    = ailen[row];
563fd3458f5SBarry Smith       low1     = 0;
564fd3458f5SBarry Smith       high1    = nrow1;
565fd3458f5SBarry Smith       lastcol2 = -1;
5668e3a54c0SPierre Jolivet       rp2      = PetscSafePointerPlusOffset(bj, bi[row]);
5678e3a54c0SPierre Jolivet       ap2      = PetscSafePointerPlusOffset(ba, bi[row]);
568fd3458f5SBarry Smith       rmax2    = bimax[row];
569d498b1e9SBarry Smith       nrow2    = bilen[row];
570fd3458f5SBarry Smith       low2     = 0;
571fd3458f5SBarry Smith       high2    = nrow2;
572fd3458f5SBarry Smith 
5731eb62cbbSBarry Smith       for (j = 0; j < n; j++) {
574071fcb05SBarry Smith         if (v) value = roworiented ? v[i * n + j] : v[i + j * m];
575c80a64e6SBarry Smith         if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
576fd3458f5SBarry Smith         if (in[j] >= cstart && in[j] < cend) {
577fd3458f5SBarry Smith           col   = in[j] - cstart;
5788d76821aSHong Zhang           nonew = a->nonew;
579d40312a9SBarry Smith           MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
580f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
581f7d195e4SLawrence Mitchell           continue;
582f7d195e4SLawrence Mitchell         } else {
583f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
584227d817aSBarry Smith           if (mat->was_assembled) {
58548a46eb9SPierre Jolivet             if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
587eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */
588fa46199cSSatish Balay             col--;
589b1fc9764SSatish Balay #else
590905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
591b1fc9764SSatish Balay #endif
592f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */
593eb14dd14SAlex Lindsay               PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));  /* Change aij->B from reduced/local format to expanded/global format */
5944b0e389bSBarry Smith               col = in[j];
5959bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
596f9508a3cSSatish Balay               B     = aij->B;
597f9508a3cSSatish Balay               b     = (Mat_SeqAIJ *)B->data;
5989371c9d4SSatish Balay               bimax = b->imax;
5999371c9d4SSatish Balay               bi    = b->i;
6009371c9d4SSatish Balay               bilen = b->ilen;
6019371c9d4SSatish Balay               bj    = b->j;
6029371c9d4SSatish Balay               ba    = b->a;
603cff58d65SJunchao Zhang               rp2   = PetscSafePointerPlusOffset(bj, bi[row]);
604cff58d65SJunchao Zhang               ap2   = PetscSafePointerPlusOffset(ba, bi[row]);
605d498b1e9SBarry Smith               rmax2 = bimax[row];
606d498b1e9SBarry Smith               nrow2 = bilen[row];
607d498b1e9SBarry Smith               low2  = 0;
608d498b1e9SBarry Smith               high2 = nrow2;
609d0f46423SBarry Smith               bm    = aij->B->rmap->n;
610f9508a3cSSatish Balay               ba    = b->a;
611d707bf6cSMatthew Knepley             } else if (col < 0 && !(ignorezeroentries && value == 0.0)) {
612966bd95aSPierre Jolivet               PetscCheck(1 == ((Mat_SeqAIJ *)aij->B->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
6139566063dSJacob Faibussowitsch               PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j]));
6140587a0fcSBarry Smith             }
615c48de900SBarry Smith           } else col = in[j];
6168d76821aSHong Zhang           nonew = b->nonew;
617d40312a9SBarry Smith           MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
6181eb62cbbSBarry Smith         }
6191eb62cbbSBarry Smith       }
6205ef9f2a5SBarry Smith     } else {
62128b400f6SJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
62290f02eecSBarry Smith       if (!aij->donotstash) {
6235080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
624d36fbae8SSatish Balay         if (roworiented) {
6258e3a54c0SPierre Jolivet           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
626d36fbae8SSatish Balay         } else {
6278e3a54c0SPierre Jolivet           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
6284b0e389bSBarry Smith         }
6291eb62cbbSBarry Smith       }
6308a729477SBarry Smith     }
63190f02eecSBarry Smith   }
6325519a089SJose E. Roman   PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */
6339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &ba));
6343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6358a729477SBarry Smith }
6368a729477SBarry Smith 
6372b08fdbeSandi selinger /*
638904d1e70Sandi selinger     This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
6392b08fdbeSandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
640904d1e70Sandi selinger     No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE.
6412b08fdbeSandi selinger */
642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[])
643d71ae5a4SJacob Faibussowitsch {
644904d1e70Sandi selinger   Mat_MPIAIJ *aij    = (Mat_MPIAIJ *)mat->data;
645904d1e70Sandi selinger   Mat         A      = aij->A; /* diagonal part of the matrix */
6464cf0e950SBarry Smith   Mat         B      = aij->B; /* off-diagonal part of the matrix */
647904d1e70Sandi selinger   Mat_SeqAIJ *a      = (Mat_SeqAIJ *)A->data;
648904d1e70Sandi selinger   Mat_SeqAIJ *b      = (Mat_SeqAIJ *)B->data;
649904d1e70Sandi selinger   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, col;
650904d1e70Sandi selinger   PetscInt   *ailen = a->ilen, *aj = a->j;
651904d1e70Sandi selinger   PetscInt   *bilen = b->ilen, *bj = b->j;
6526dc1ffa3Sandi selinger   PetscInt    am          = aij->A->rmap->n, j;
653904d1e70Sandi selinger   PetscInt    diag_so_far = 0, dnz;
654904d1e70Sandi selinger   PetscInt    offd_so_far = 0, onz;
655904d1e70Sandi selinger 
656904d1e70Sandi selinger   PetscFunctionBegin;
657904d1e70Sandi selinger   /* Iterate over all rows of the matrix */
658904d1e70Sandi selinger   for (j = 0; j < am; j++) {
659904d1e70Sandi selinger     dnz = onz = 0;
660904d1e70Sandi selinger     /*  Iterate over all non-zero columns of the current row */
6616dc1ffa3Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
662904d1e70Sandi selinger       /* If column is in the diagonal */
663904d1e70Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
664904d1e70Sandi selinger         aj[diag_so_far++] = mat_j[col] - cstart;
665904d1e70Sandi selinger         dnz++;
666904d1e70Sandi selinger       } else { /* off-diagonal entries */
667904d1e70Sandi selinger         bj[offd_so_far++] = mat_j[col];
668904d1e70Sandi selinger         onz++;
669904d1e70Sandi selinger       }
670904d1e70Sandi selinger     }
671904d1e70Sandi selinger     ailen[j] = dnz;
672904d1e70Sandi selinger     bilen[j] = onz;
673904d1e70Sandi selinger   }
6743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
675904d1e70Sandi selinger }
676904d1e70Sandi selinger 
677904d1e70Sandi selinger /*
678904d1e70Sandi selinger     This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix.
679904d1e70Sandi selinger     The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like).
6801de21080Sandi selinger     No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ.
6811de21080Sandi selinger     Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart;
6821de21080Sandi selinger     would not be true and the more complex MatSetValues_MPIAIJ has to be used.
683904d1e70Sandi selinger */
684d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[])
685d71ae5a4SJacob Faibussowitsch {
6863a063d27Sandi selinger   Mat_MPIAIJ  *aij  = (Mat_MPIAIJ *)mat->data;
6873a063d27Sandi selinger   Mat          A    = aij->A; /* diagonal part of the matrix */
6884cf0e950SBarry Smith   Mat          B    = aij->B; /* off-diagonal part of the matrix */
689f4f49eeaSPierre Jolivet   Mat_SeqAIJ  *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data;
6903a063d27Sandi selinger   Mat_SeqAIJ  *a      = (Mat_SeqAIJ *)A->data;
6913a063d27Sandi selinger   Mat_SeqAIJ  *b      = (Mat_SeqAIJ *)B->data;
6923a063d27Sandi selinger   PetscInt     cstart = mat->cmap->rstart, cend = mat->cmap->rend;
6933a063d27Sandi selinger   PetscInt    *ailen = a->ilen, *aj = a->j;
6943a063d27Sandi selinger   PetscInt    *bilen = b->ilen, *bj = b->j;
6956dc1ffa3Sandi selinger   PetscInt     am          = aij->A->rmap->n, j;
6961de21080Sandi selinger   PetscInt    *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */
697904d1e70Sandi selinger   PetscInt     col, dnz_row, onz_row, rowstart_diag, rowstart_offd;
698904d1e70Sandi selinger   PetscScalar *aa = a->a, *ba = b->a;
6993a063d27Sandi selinger 
7003a063d27Sandi selinger   PetscFunctionBegin;
7013a063d27Sandi selinger   /* Iterate over all rows of the matrix */
7023a063d27Sandi selinger   for (j = 0; j < am; j++) {
703904d1e70Sandi selinger     dnz_row = onz_row = 0;
704904d1e70Sandi selinger     rowstart_offd     = full_offd_i[j];
705904d1e70Sandi selinger     rowstart_diag     = full_diag_i[j];
706e9ede7d0Sandi selinger     /*  Iterate over all non-zero columns of the current row */
707e9ede7d0Sandi selinger     for (col = mat_i[j]; col < mat_i[j + 1]; col++) {
708ae8e66a0Sandi selinger       /* If column is in the diagonal */
7093a063d27Sandi selinger       if (mat_j[col] >= cstart && mat_j[col] < cend) {
710904d1e70Sandi selinger         aj[rowstart_diag + dnz_row] = mat_j[col] - cstart;
711904d1e70Sandi selinger         aa[rowstart_diag + dnz_row] = mat_a[col];
712904d1e70Sandi selinger         dnz_row++;
713ae8e66a0Sandi selinger       } else { /* off-diagonal entries */
714904d1e70Sandi selinger         bj[rowstart_offd + onz_row] = mat_j[col];
715904d1e70Sandi selinger         ba[rowstart_offd + onz_row] = mat_a[col];
716904d1e70Sandi selinger         onz_row++;
7173a063d27Sandi selinger       }
7183a063d27Sandi selinger     }
719904d1e70Sandi selinger     ailen[j] = dnz_row;
720904d1e70Sandi selinger     bilen[j] = onz_row;
7213a063d27Sandi selinger   }
7223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7233a063d27Sandi selinger }
7243a063d27Sandi selinger 
725ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
726d71ae5a4SJacob Faibussowitsch {
727b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
728d0f46423SBarry Smith   PetscInt    i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
729d0f46423SBarry Smith   PetscInt    cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
730b49de8d1SLois Curfman McInnes 
7313a40ed3dSBarry Smith   PetscFunctionBegin;
732b49de8d1SLois Curfman McInnes   for (i = 0; i < m; i++) {
73354c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
73454c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
73585835d77SBarry Smith     PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend);
736b49de8d1SLois Curfman McInnes     row = idxm[i] - rstart;
737b49de8d1SLois Curfman McInnes     for (j = 0; j < n; j++) {
73854c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
73954c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
740b49de8d1SLois Curfman McInnes       if (idxn[j] >= cstart && idxn[j] < cend) {
741b49de8d1SLois Curfman McInnes         col = idxn[j] - cstart;
7429566063dSJacob Faibussowitsch         PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j));
743fa852ad4SSatish Balay       } else {
74448a46eb9SPierre Jolivet         if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
745aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
746eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col));
747fa46199cSSatish Balay         col--;
748b1fc9764SSatish Balay #else
749905e6a2fSBarry Smith         col = aij->colmap[idxn[j]] - 1;
750b1fc9764SSatish Balay #endif
751e60e1c95SSatish Balay         if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0;
75248a46eb9SPierre Jolivet         else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j));
753b49de8d1SLois Curfman McInnes       }
754b49de8d1SLois Curfman McInnes     }
755b49de8d1SLois Curfman McInnes   }
7563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
757b49de8d1SLois Curfman McInnes }
758bc5ccf88SSatish Balay 
759ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode)
760d71ae5a4SJacob Faibussowitsch {
761bc5ccf88SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
762b1d57f15SBarry Smith   PetscInt    nstash, reallocs;
763bc5ccf88SSatish Balay 
764bc5ccf88SSatish Balay   PetscFunctionBegin;
7653ba16761SJacob Faibussowitsch   if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
766bc5ccf88SSatish Balay 
7679566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
7689566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
769799b351eSPierre Jolivet   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
7703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771bc5ccf88SSatish Balay }
772bc5ccf88SSatish Balay 
773d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode)
774d71ae5a4SJacob Faibussowitsch {
775bc5ccf88SSatish Balay   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *)mat->data;
776b1d57f15SBarry Smith   PetscMPIInt  n;
777b1d57f15SBarry Smith   PetscInt     i, j, rstart, ncols, flg;
778e44c0bd4SBarry Smith   PetscInt    *row, *col;
779c0edf612SJunchao Zhang   PetscBool    all_assembled;
78087828ca2SBarry Smith   PetscScalar *val;
781bc5ccf88SSatish Balay 
78291c97fd4SSatish Balay   /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */
7836e111a19SKarl Rupp 
784bc5ccf88SSatish Balay   PetscFunctionBegin;
7854cb17eb5SBarry Smith   if (!aij->donotstash && !mat->nooffprocentries) {
786a2d1c673SSatish Balay     while (1) {
7879566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
788a2d1c673SSatish Balay       if (!flg) break;
789a2d1c673SSatish Balay 
790bc5ccf88SSatish Balay       for (i = 0; i < n;) {
791bc5ccf88SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
7922205254eSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
7932205254eSKarl Rupp           if (row[j] != rstart) break;
7942205254eSKarl Rupp         }
795bc5ccf88SSatish Balay         if (j < n) ncols = j - i;
796bc5ccf88SSatish Balay         else ncols = n - i;
797bc5ccf88SSatish Balay         /* Now assemble all these values with a single function call */
7989566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
799bc5ccf88SSatish Balay         i = j;
800bc5ccf88SSatish Balay       }
801bc5ccf88SSatish Balay     }
8029566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
803bc5ccf88SSatish Balay   }
8048c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
805c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU;
8069ecce9b1SRichard Tran Mills   /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */
8079ecce9b1SRichard Tran Mills   if (mat->boundtocpu) {
8089566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->A, PETSC_TRUE));
8099566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(aij->B, PETSC_TRUE));
8109ecce9b1SRichard Tran Mills   }
811e2cf4d64SStefano Zampini #endif
8129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->A, mode));
8139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->A, mode));
814bc5ccf88SSatish Balay 
815b638e6b4SJunchao Zhang   /* determine if any process has disassembled, if so we must
816071fcb05SBarry Smith      also disassemble ourself, in order that we may reassemble. */
817bc5ccf88SSatish Balay   /*
818bc5ccf88SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
819b638e6b4SJunchao Zhang      no process disassembled thus we can skip this stuff
820bc5ccf88SSatish Balay   */
821bc5ccf88SSatish Balay   if (!((Mat_SeqAIJ *)aij->B->data)->nonew) {
8225440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
823c0edf612SJunchao Zhang     if (mat->was_assembled && !all_assembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */
824eb14dd14SAlex Lindsay       PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
825ad59fb31SSatish Balay     }
826ad59fb31SSatish Balay   }
82748a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat));
8289566063dSJacob Faibussowitsch   PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE));
8298c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
830c70f7ee4SJunchao Zhang   if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU;
831e2cf4d64SStefano Zampini #endif
8329566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(aij->B, mode));
8339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(aij->B, mode));
834bc5ccf88SSatish Balay 
8359566063dSJacob Faibussowitsch   PetscCall(PetscFree2(aij->rowvalues, aij->rowindices));
8362205254eSKarl Rupp 
837f4259b30SLisandro Dalcin   aij->rowvalues = NULL;
838a30b2313SHong Zhang 
8399566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&aij->diag));
840e56f5c9eSBarry Smith 
8414f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
842f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) {
843e56f5c9eSBarry Smith     PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate;
844462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
845e56f5c9eSBarry Smith   }
8468c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
847c70f7ee4SJunchao Zhang   mat->offloadmask = PETSC_OFFLOAD_BOTH;
848e2cf4d64SStefano Zampini #endif
8493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
850bc5ccf88SSatish Balay }
851bc5ccf88SSatish Balay 
852ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A)
853d71ae5a4SJacob Faibussowitsch {
85444a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data;
8553a40ed3dSBarry Smith 
8563a40ed3dSBarry Smith   PetscFunctionBegin;
8579566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
8589566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
8593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8601eb62cbbSBarry Smith }
8611eb62cbbSBarry Smith 
862ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
863d71ae5a4SJacob Faibussowitsch {
8641b1dd7adSMatthew G. Knepley   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data;
8651b1dd7adSMatthew G. Knepley   PetscInt   *lrows;
8666e520ac8SStefano Zampini   PetscInt    r, len;
8679939a2d1SBarry Smith   PetscBool   cong;
8681eb62cbbSBarry Smith 
8693a40ed3dSBarry Smith   PetscFunctionBegin;
8706e520ac8SStefano Zampini   /* get locally owned rows */
8719566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
8729566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
873dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
87497b48c8fSBarry Smith   if (x && b) {
8751b1dd7adSMatthew G. Knepley     const PetscScalar *xx;
8761b1dd7adSMatthew G. Knepley     PetscScalar       *bb;
8771b1dd7adSMatthew G. Knepley 
87828b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
8799566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
8809566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
8811b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
8829566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
8839566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
88497b48c8fSBarry Smith   }
885a92ad425SStefano Zampini 
886a92ad425SStefano Zampini   if (diag != 0.0 && cong) {
8879566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL));
8889566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
889a92ad425SStefano Zampini   } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */
890a92ad425SStefano Zampini     Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data;
891a92ad425SStefano Zampini     Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data;
892a92ad425SStefano Zampini     PetscInt    nnwA, nnwB;
893a92ad425SStefano Zampini     PetscBool   nnzA, nnzB;
894a92ad425SStefano Zampini 
895a92ad425SStefano Zampini     nnwA = aijA->nonew;
896a92ad425SStefano Zampini     nnwB = aijB->nonew;
897a92ad425SStefano Zampini     nnzA = aijA->keepnonzeropattern;
898a92ad425SStefano Zampini     nnzB = aijB->keepnonzeropattern;
899a92ad425SStefano Zampini     if (!nnzA) {
9009566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n"));
901a92ad425SStefano Zampini       aijA->nonew = 0;
902a92ad425SStefano Zampini     }
903a92ad425SStefano Zampini     if (!nnzB) {
9049566063dSJacob Faibussowitsch       PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n"));
905a92ad425SStefano Zampini       aijB->nonew = 0;
906a92ad425SStefano Zampini     }
907a92ad425SStefano Zampini     /* Must zero here before the next loop */
9089566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9099566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9101b1dd7adSMatthew G. Knepley     for (r = 0; r < len; ++r) {
9111b1dd7adSMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
912a92ad425SStefano Zampini       if (row >= A->cmap->N) continue;
9139566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
914e2d53e46SBarry Smith     }
915a92ad425SStefano Zampini     aijA->nonew = nnwA;
916a92ad425SStefano Zampini     aijB->nonew = nnwB;
9176eb55b6aSBarry Smith   } else {
9189566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL));
9199566063dSJacob Faibussowitsch     PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL));
9206eb55b6aSBarry Smith   }
9219566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
9229566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
9239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
9244f9cfa9eSBarry Smith 
9259939a2d1SBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
926f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) {
9279939a2d1SBarry Smith     PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate;
928462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
9299939a2d1SBarry Smith   }
9303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9311eb62cbbSBarry Smith }
9321eb62cbbSBarry Smith 
933ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
934d71ae5a4SJacob Faibussowitsch {
9359c7c4993SBarry Smith   Mat_MPIAIJ        *l = (Mat_MPIAIJ *)A->data;
9366497c311SBarry Smith   PetscInt           n = A->rmap->n;
937131c27b5Sprj-   PetscInt           i, j, r, m, len = 0;
93854bd4135SMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
939131c27b5Sprj-   PetscMPIInt        p = 0;
94054bd4135SMatthew G. Knepley   PetscSFNode       *rrows;
94154bd4135SMatthew G. Knepley   PetscSF            sf;
9429c7c4993SBarry Smith   const PetscScalar *xx;
943fff043a9SJunchao Zhang   PetscScalar       *bb, *mask, *aij_a;
944564f14d6SBarry Smith   Vec                xmask, lmask;
945564f14d6SBarry Smith   Mat_SeqAIJ        *aij = (Mat_SeqAIJ *)l->B->data;
946564f14d6SBarry Smith   const PetscInt    *aj, *ii, *ridx;
947564f14d6SBarry Smith   PetscScalar       *aa;
9489c7c4993SBarry Smith 
9499c7c4993SBarry Smith   PetscFunctionBegin;
95054bd4135SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
9519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
95254bd4135SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
9539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
95454bd4135SMatthew G. Knepley   for (r = 0; r < N; ++r) {
95554bd4135SMatthew G. Knepley     const PetscInt idx = rows[r];
956aed4548fSBarry Smith     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
9575ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
9589566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
9595ba17502SJed Brown     }
96054bd4135SMatthew G. Knepley     rrows[r].rank  = p;
96154bd4135SMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
9629c7c4993SBarry Smith   }
9639566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
9649566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
96554bd4135SMatthew G. Knepley   /* Collect flags for rows to be zeroed */
9669566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9679566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
9689566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
96954bd4135SMatthew G. Knepley   /* Compress and put in row numbers */
9709371c9d4SSatish Balay   for (r = 0; r < n; ++r)
9719371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
972564f14d6SBarry Smith   /* zero diagonal part of matrix */
9739566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
9744cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
9759566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
9769566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
9779566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
97854bd4135SMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
9799566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
9809566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9819566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
9829566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
983a92ad425SStefano Zampini   if (x && b) { /* this code is buggy when the row and column layout don't match */
984a92ad425SStefano Zampini     PetscBool cong;
985a92ad425SStefano Zampini 
9869566063dSJacob Faibussowitsch     PetscCall(MatHasCongruentLayouts(A, &cong));
98728b400f6SJacob Faibussowitsch     PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout");
9889566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9899566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
9909566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
9919566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
992377aa5a1SBarry Smith   }
9939566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
9944cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
9959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(l->B, &aij_a));
996564f14d6SBarry Smith   ii = aij->i;
9978e3a54c0SPierre Jolivet   for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]]));
998564f14d6SBarry Smith   /* loop over all elements of off process part of matrix zeroing removed columns*/
999564f14d6SBarry Smith   if (aij->compressedrow.use) {
1000564f14d6SBarry Smith     m    = aij->compressedrow.nrows;
1001564f14d6SBarry Smith     ii   = aij->compressedrow.i;
1002564f14d6SBarry Smith     ridx = aij->compressedrow.rindex;
1003564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1004564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1005564f14d6SBarry Smith       aj = aij->j + ii[i];
1006fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1007564f14d6SBarry Smith 
1008564f14d6SBarry Smith       for (j = 0; j < n; j++) {
100925266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1010377aa5a1SBarry Smith           if (b) bb[*ridx] -= *aa * xx[*aj];
1011564f14d6SBarry Smith           *aa = 0.0;
1012564f14d6SBarry Smith         }
1013564f14d6SBarry Smith         aa++;
1014564f14d6SBarry Smith         aj++;
1015564f14d6SBarry Smith       }
1016564f14d6SBarry Smith       ridx++;
1017564f14d6SBarry Smith     }
1018564f14d6SBarry Smith   } else { /* do not use compressed row format */
1019564f14d6SBarry Smith     m = l->B->rmap->n;
1020564f14d6SBarry Smith     for (i = 0; i < m; i++) {
1021564f14d6SBarry Smith       n  = ii[i + 1] - ii[i];
1022564f14d6SBarry Smith       aj = aij->j + ii[i];
1023fff043a9SJunchao Zhang       aa = aij_a + ii[i];
1024564f14d6SBarry Smith       for (j = 0; j < n; j++) {
102525266a92SSatish Balay         if (PetscAbsScalar(mask[*aj])) {
1026377aa5a1SBarry Smith           if (b) bb[i] -= *aa * xx[*aj];
1027564f14d6SBarry Smith           *aa = 0.0;
1028564f14d6SBarry Smith         }
1029564f14d6SBarry Smith         aa++;
1030564f14d6SBarry Smith         aj++;
1031564f14d6SBarry Smith       }
1032564f14d6SBarry Smith     }
1033564f14d6SBarry Smith   }
1034a92ad425SStefano Zampini   if (x && b) {
10359566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
10369566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
1037377aa5a1SBarry Smith   }
10389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a));
10399566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
10409566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
10419566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
10424f9cfa9eSBarry Smith 
10434f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1044f4f49eeaSPierre Jolivet   if (!((Mat_SeqAIJ *)l->A->data)->nonew) {
10454f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1046462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
10474f9cfa9eSBarry Smith   }
10483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10499c7c4993SBarry Smith }
10509c7c4993SBarry Smith 
1051ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy)
1052d71ae5a4SJacob Faibussowitsch {
1053416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1054b1d57f15SBarry Smith   PetscInt    nt;
105519b3b6edSHong Zhang   VecScatter  Mvctx = a->Mvctx;
1056416022c9SBarry Smith 
10573a40ed3dSBarry Smith   PetscFunctionBegin;
10589566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
105908401ef6SPierre Jolivet   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt);
10609566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1061296d8154SBarry Smith   PetscUseTypeMethod(a->A, mult, xx, yy);
10629566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
1063296d8154SBarry Smith   PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy);
10643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10651eb62cbbSBarry Smith }
10661eb62cbbSBarry Smith 
1067ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx)
1068d71ae5a4SJacob Faibussowitsch {
1069bd0c2dcbSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1070bd0c2dcbSBarry Smith 
1071bd0c2dcbSBarry Smith   PetscFunctionBegin;
10729566063dSJacob Faibussowitsch   PetscCall(MatMultDiagonalBlock(a->A, bb, xx));
10733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1074bd0c2dcbSBarry Smith }
1075bd0c2dcbSBarry Smith 
1076ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1077d71ae5a4SJacob Faibussowitsch {
1078416022c9SBarry Smith   Mat_MPIAIJ *a     = (Mat_MPIAIJ *)A->data;
107901ad2aeeSHong Zhang   VecScatter  Mvctx = a->Mvctx;
10803a40ed3dSBarry Smith 
10813a40ed3dSBarry Smith   PetscFunctionBegin;
10829566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10839566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
10849566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
10859566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
10863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1087da3a660dSBarry Smith }
1088da3a660dSBarry Smith 
1089ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy)
1090d71ae5a4SJacob Faibussowitsch {
1091416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1092da3a660dSBarry Smith 
10933a40ed3dSBarry Smith   PetscFunctionBegin;
1094da3a660dSBarry Smith   /* do nondiagonal part */
10959566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1096da3a660dSBarry Smith   /* do local part */
10979566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
10989613dc34SJunchao Zhang   /* add partial results together */
10999566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11009566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
11013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1102da3a660dSBarry Smith }
1103da3a660dSBarry Smith 
1104ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f)
1105d71ae5a4SJacob Faibussowitsch {
11064f423910Svictorle   MPI_Comm    comm;
1107ad79cf63SBarry Smith   Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data;
1108ad79cf63SBarry Smith   Mat         Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs;
1109cd0d46ebSvictorle   IS          Me, Notme;
1110b1d57f15SBarry Smith   PetscInt    M, N, first, last, *notme, i;
111154d735aeSStefano Zampini   PetscBool   lf;
1112b1d57f15SBarry Smith   PetscMPIInt size;
1113cd0d46ebSvictorle 
1114cd0d46ebSvictorle   PetscFunctionBegin;
111542e5f5b4Svictorle   /* Easy test: symmetric diagonal block */
11169566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf));
11175440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat)));
11183ba16761SJacob Faibussowitsch   if (!*f) PetscFunctionReturn(PETSC_SUCCESS);
11199566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
11209566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
11213ba16761SJacob Faibussowitsch   if (size == 1) PetscFunctionReturn(PETSC_SUCCESS);
112242e5f5b4Svictorle 
11237dae84e0SHong Zhang   /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */
11249566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Amat, &M, &N));
11259566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(Amat, &first, &last));
11269566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N - last + first, &notme));
1127cd0d46ebSvictorle   for (i = 0; i < first; i++) notme[i] = i;
1128cd0d46ebSvictorle   for (i = last; i < M; i++) notme[i - last + first] = i;
11299566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme));
11309566063dSJacob Faibussowitsch   PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me));
11319566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs));
113266501d38Svictorle   Aoff = Aoffs[0];
11339566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs));
113466501d38Svictorle   Boff = Boffs[0];
11359566063dSJacob Faibussowitsch   PetscCall(MatIsTranspose(Aoff, Boff, tol, f));
11369566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Aoffs));
11379566063dSJacob Faibussowitsch   PetscCall(MatDestroyMatrices(1, &Boffs));
11389566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Me));
11399566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&Notme));
11409566063dSJacob Faibussowitsch   PetscCall(PetscFree(notme));
11413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1142cd0d46ebSvictorle }
1143cd0d46ebSvictorle 
1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1145d71ae5a4SJacob Faibussowitsch {
1146416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1147da3a660dSBarry Smith 
11483a40ed3dSBarry Smith   PetscFunctionBegin;
1149da3a660dSBarry Smith   /* do nondiagonal part */
11509566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1151da3a660dSBarry Smith   /* do local part */
11529566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
11539613dc34SJunchao Zhang   /* add partial results together */
11549566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11559566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
11563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1157da3a660dSBarry Smith }
1158da3a660dSBarry Smith 
11591eb62cbbSBarry Smith /*
11601eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
11611eb62cbbSBarry Smith    diagonal block
11621eb62cbbSBarry Smith */
1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v)
1164d71ae5a4SJacob Faibussowitsch {
1165416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11663a40ed3dSBarry Smith 
11673a40ed3dSBarry Smith   PetscFunctionBegin;
116808401ef6SPierre Jolivet   PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
1169aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition");
11709566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(a->A, v));
11713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
11721eb62cbbSBarry Smith }
11731eb62cbbSBarry Smith 
1174ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa)
1175d71ae5a4SJacob Faibussowitsch {
1176052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
11773a40ed3dSBarry Smith 
11783a40ed3dSBarry Smith   PetscFunctionBegin;
11799566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
11809566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
11813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1182052efed2SBarry Smith }
1183052efed2SBarry Smith 
1184ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
1185d71ae5a4SJacob Faibussowitsch {
11868e2fed03SBarry Smith   Mat_MPIAIJ        *aij    = (Mat_MPIAIJ *)mat->data;
11878e2fed03SBarry Smith   Mat_SeqAIJ        *A      = (Mat_SeqAIJ *)aij->A->data;
11888e2fed03SBarry Smith   Mat_SeqAIJ        *B      = (Mat_SeqAIJ *)aij->B->data;
11893ea6fe3dSLisandro Dalcin   const PetscInt    *garray = aij->garray;
11902e5835c6SStefano Zampini   const PetscScalar *aa, *ba;
119117a3732bSBarry Smith   PetscInt           header[4], M, N, m, rs, cs, cnt, i, ja, jb;
119217a3732bSBarry Smith   PetscInt64         nz, hnz;
11933ea6fe3dSLisandro Dalcin   PetscInt          *rowlens;
11943ea6fe3dSLisandro Dalcin   PetscInt          *colidxs;
11953ea6fe3dSLisandro Dalcin   PetscScalar       *matvals;
119617a3732bSBarry Smith   PetscMPIInt        rank;
11978e2fed03SBarry Smith 
11988e2fed03SBarry Smith   PetscFunctionBegin;
11999566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
12003ea6fe3dSLisandro Dalcin 
12013ea6fe3dSLisandro Dalcin   M  = mat->rmap->N;
12023ea6fe3dSLisandro Dalcin   N  = mat->cmap->N;
12033ea6fe3dSLisandro Dalcin   m  = mat->rmap->n;
12043ea6fe3dSLisandro Dalcin   rs = mat->rmap->rstart;
12053ea6fe3dSLisandro Dalcin   cs = mat->cmap->rstart;
12068e2fed03SBarry Smith   nz = A->nz + B->nz;
12073ea6fe3dSLisandro Dalcin 
12083ea6fe3dSLisandro Dalcin   /* write matrix header */
12090700a824SBarry Smith   header[0] = MAT_FILE_CLASSID;
12109371c9d4SSatish Balay   header[1] = M;
12119371c9d4SSatish Balay   header[2] = N;
121217a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
121317a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
1214835f2295SStefano Zampini   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
12159566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
12168e2fed03SBarry Smith 
12173ea6fe3dSLisandro Dalcin   /* fill in and store row lengths  */
12189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
12193ea6fe3dSLisandro Dalcin   for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i];
12209566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
12219566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
12228e2fed03SBarry Smith 
12233ea6fe3dSLisandro Dalcin   /* fill in and store column indices */
12249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
12253ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12263ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12273ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12283ea6fe3dSLisandro Dalcin       colidxs[cnt++] = garray[B->j[jb]];
12298e2fed03SBarry Smith     }
12309371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs;
12319371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]];
12328e2fed03SBarry Smith   }
123317a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12349566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
12359566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
12368e2fed03SBarry Smith 
12373ea6fe3dSLisandro Dalcin   /* fill in and store nonzero values */
12389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa));
12399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba));
12409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
12413ea6fe3dSLisandro Dalcin   for (cnt = 0, i = 0; i < m; i++) {
12423ea6fe3dSLisandro Dalcin     for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
12433ea6fe3dSLisandro Dalcin       if (garray[B->j[jb]] > cs) break;
12442e5835c6SStefano Zampini       matvals[cnt++] = ba[jb];
12458e2fed03SBarry Smith     }
12469371c9d4SSatish Balay     for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja];
12479371c9d4SSatish Balay     for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb];
12488e2fed03SBarry Smith   }
12499566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa));
12509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba));
125117a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
12529566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
12539566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
12548e2fed03SBarry Smith 
12553ea6fe3dSLisandro Dalcin   /* write block size option to the viewer's .info file */
12569566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12588e2fed03SBarry Smith }
12598e2fed03SBarry Smith 
12609804daf3SBarry Smith #include <petscdraw.h>
1261ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1262d71ae5a4SJacob Faibussowitsch {
126344a69424SLois Curfman McInnes   Mat_MPIAIJ       *aij  = (Mat_MPIAIJ *)mat->data;
126432dcc486SBarry Smith   PetscMPIInt       rank = aij->rank, size = aij->size;
12659f196a02SMartin Diehl   PetscBool         isdraw, isascii, isbinary;
1266b0a32e0cSBarry Smith   PetscViewer       sviewer;
1267f3ef73ceSBarry Smith   PetscViewerFormat format;
1268416022c9SBarry Smith 
12693a40ed3dSBarry Smith   PetscFunctionBegin;
12709566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12719f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
12729566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
12739f196a02SMartin Diehl   if (isascii) {
12749566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1275ef5fdb51SBarry Smith     if (format == PETSC_VIEWER_LOAD_BALANCE) {
12761690c2aeSBarry Smith       PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz;
12779566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(size, &nz));
12789566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat)));
1279835f2295SStefano Zampini       for (i = 0; i < size; i++) {
1280ef5fdb51SBarry Smith         nmax = PetscMax(nmax, nz[i]);
1281ef5fdb51SBarry Smith         nmin = PetscMin(nmin, nz[i]);
1282ef5fdb51SBarry Smith         navg += nz[i];
1283ef5fdb51SBarry Smith       }
12849566063dSJacob Faibussowitsch       PetscCall(PetscFree(nz));
1285ef5fdb51SBarry Smith       navg = navg / size;
12869566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT "  avg %" PetscInt_FMT "  max %" PetscInt_FMT "\n", nmin, navg, nmax));
12873ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1288ef5fdb51SBarry Smith     }
12899566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1290456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
12914e220ebcSLois Curfman McInnes       MatInfo   info;
12926335e310SSatish Balay       PetscInt *inodes = NULL;
1293923f20ffSKris Buschelman 
12949566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
12959566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
12969566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL));
12979566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
1298923f20ffSKris Buschelman       if (!inodes) {
12999371c9d4SSatish Balay         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
1300835f2295SStefano Zampini                                                      info.memory));
13016831982aSBarry Smith       } else {
1302835f2295SStefano Zampini         PetscCall(
1303835f2295SStefano Zampini           PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory));
13046831982aSBarry Smith       }
13059566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info));
13069566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13079566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info));
13089566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
13099566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
13109566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
13119566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
13129566063dSJacob Faibussowitsch       PetscCall(VecScatterView(aij->Mvctx, viewer));
13133ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1314fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1315923f20ffSKris Buschelman       PetscInt inodecount, inodelimit, *inodes;
13169566063dSJacob Faibussowitsch       PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit));
1317923f20ffSKris Buschelman       if (inodes) {
13189566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit));
1319d38fa0fbSBarry Smith       } else {
13209566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n"));
1321d38fa0fbSBarry Smith       }
13223ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
13234aedb280SBarry Smith     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
13243ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
132508480c60SBarry Smith     }
13268e2fed03SBarry Smith   } else if (isbinary) {
13278e2fed03SBarry Smith     if (size == 1) {
13289566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13299566063dSJacob Faibussowitsch       PetscCall(MatView(aij->A, viewer));
13308e2fed03SBarry Smith     } else {
13319566063dSJacob Faibussowitsch       PetscCall(MatView_MPIAIJ_Binary(mat, viewer));
13328e2fed03SBarry Smith     }
13333ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13349f196a02SMartin Diehl   } else if (isascii && size == 1) {
13359566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name));
13369566063dSJacob Faibussowitsch     PetscCall(MatView(aij->A, viewer));
13373ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
13380f5bd95cSBarry Smith   } else if (isdraw) {
1339b0a32e0cSBarry Smith     PetscDraw draw;
1340ace3abfcSBarry Smith     PetscBool isnull;
13419566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
13429566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
13433ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
134419bcc07fSBarry Smith   }
134519bcc07fSBarry Smith 
134671e56450SStefano Zampini   { /* assemble the entire matrix onto first processor */
134771e56450SStefano Zampini     Mat A = NULL, Av;
134871e56450SStefano Zampini     IS  isrow, iscol;
13492ee70a88SLois Curfman McInnes 
13509566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow));
13519566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol));
13529566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A));
13539566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL));
135471e56450SStefano Zampini     /*  The commented code uses MatCreateSubMatrices instead */
135571e56450SStefano Zampini     /*
135671e56450SStefano Zampini     Mat *AA, A = NULL, Av;
135771e56450SStefano Zampini     IS  isrow,iscol;
135871e56450SStefano Zampini 
13599566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow));
13609566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol));
13619566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA));
1362dd400576SPatrick Sanan     if (rank == 0) {
13639566063dSJacob Faibussowitsch        PetscCall(PetscObjectReference((PetscObject)AA[0]));
136471e56450SStefano Zampini        A    = AA[0];
136571e56450SStefano Zampini        Av   = AA[0];
136695373324SBarry Smith     }
13679566063dSJacob Faibussowitsch     PetscCall(MatDestroySubMatrices(1,&AA));
136871e56450SStefano Zampini */
13699566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol));
13709566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow));
137155843e3eSBarry Smith     /*
137255843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1373b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
137455843e3eSBarry Smith     */
13759566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
1376dd400576SPatrick Sanan     if (rank == 0) {
137748a46eb9SPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name));
13789566063dSJacob Faibussowitsch       PetscCall(MatView_SeqAIJ(Av, sviewer));
137995373324SBarry Smith     }
13809566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
13819566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
138295373324SBarry Smith   }
13833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13841eb62cbbSBarry Smith }
13851eb62cbbSBarry Smith 
1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer)
1387d71ae5a4SJacob Faibussowitsch {
13889f196a02SMartin Diehl   PetscBool isascii, isdraw, issocket, isbinary;
1389416022c9SBarry Smith 
13903a40ed3dSBarry Smith   PetscFunctionBegin;
13919f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
13929566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
13939566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
13949566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
13959f196a02SMartin Diehl   if (isascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer));
13963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1397416022c9SBarry Smith }
1398416022c9SBarry Smith 
1399ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
1400d71ae5a4SJacob Faibussowitsch {
140144a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data;
1402f4259b30SLisandro Dalcin   Vec         bb1 = NULL;
1403ace3abfcSBarry Smith   PetscBool   hasop;
14048a729477SBarry Smith 
14053a40ed3dSBarry Smith   PetscFunctionBegin;
1406a2b30743SBarry Smith   if (flag == SOR_APPLY_UPPER) {
14079566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14083ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1409a2b30743SBarry Smith   }
1410a2b30743SBarry Smith 
141148a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1));
14124e980039SJed Brown 
1413c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
1414da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14159566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14162798e883SHong Zhang       its--;
1417da3a660dSBarry Smith     }
14182798e883SHong Zhang 
14192798e883SHong Zhang     while (its--) {
14209566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14219566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14222798e883SHong Zhang 
1423c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14249566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14259566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14262798e883SHong Zhang 
1427c14dc6b6SHong Zhang       /* local sweep */
14289566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
14292798e883SHong Zhang     }
14303a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
1431da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14329566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14332798e883SHong Zhang       its--;
1434da3a660dSBarry Smith     }
14352798e883SHong Zhang     while (its--) {
14369566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14379566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14382798e883SHong Zhang 
1439c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14409566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14419566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
1442c14dc6b6SHong Zhang 
1443c14dc6b6SHong Zhang       /* local sweep */
14449566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
14452798e883SHong Zhang     }
14463a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
1447da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
14489566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
14492798e883SHong Zhang       its--;
1450da3a660dSBarry Smith     }
14512798e883SHong Zhang     while (its--) {
14529566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14539566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14542798e883SHong Zhang 
1455c14dc6b6SHong Zhang       /* update rhs: bb1 = bb - B*x */
14569566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
14579566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
14582798e883SHong Zhang 
1459c14dc6b6SHong Zhang       /* local sweep */
14609566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
14612798e883SHong Zhang     }
1462a7420bb7SBarry Smith   } else if (flag & SOR_EISENSTAT) {
1463a7420bb7SBarry Smith     Vec xx1;
1464a7420bb7SBarry Smith 
14659566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb, &xx1));
14669566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx));
1467a7420bb7SBarry Smith 
14689566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
14699566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
1470a7420bb7SBarry Smith     if (!mat->diag) {
14719566063dSJacob Faibussowitsch       PetscCall(MatCreateVecs(matin, &mat->diag, NULL));
14729566063dSJacob Faibussowitsch       PetscCall(MatGetDiagonal(matin, mat->diag));
1473a7420bb7SBarry Smith     }
14749566063dSJacob Faibussowitsch     PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop));
1475bd0c2dcbSBarry Smith     if (hasop) {
14769566063dSJacob Faibussowitsch       PetscCall(MatMultDiagonalBlock(matin, xx, bb1));
1477bd0c2dcbSBarry Smith     } else {
14789566063dSJacob Faibussowitsch       PetscCall(VecPointwiseMult(bb1, mat->diag, xx));
1479bd0c2dcbSBarry Smith     }
14809566063dSJacob Faibussowitsch     PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb));
1481887ee2caSBarry Smith 
14829566063dSJacob Faibussowitsch     PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1));
1483a7420bb7SBarry Smith 
1484a7420bb7SBarry Smith     /* local sweep */
14859566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1));
14869566063dSJacob Faibussowitsch     PetscCall(VecAXPY(xx, 1.0, xx1));
14879566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&xx1));
1488ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported");
1489c14dc6b6SHong Zhang 
14909566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
1491a0808db4SHong Zhang 
14927b6c816cSBarry Smith   matin->factorerrortype = mat->A->factorerrortype;
14933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14948a729477SBarry Smith }
1495a66be287SLois Curfman McInnes 
1496ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B)
1497d71ae5a4SJacob Faibussowitsch {
149872e6a0cfSJed Brown   Mat             aA, aB, Aperm;
149972e6a0cfSJed Brown   const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj;
150072e6a0cfSJed Brown   PetscScalar    *aa, *ba;
150172e6a0cfSJed Brown   PetscInt        i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest;
150272e6a0cfSJed Brown   PetscSF         rowsf, sf;
15030298fd71SBarry Smith   IS              parcolp = NULL;
150472e6a0cfSJed Brown   PetscBool       done;
150542e855d1Svictor 
150642e855d1Svictor   PetscFunctionBegin;
15079566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, &m, &n));
15089566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rowp, &rwant));
15099566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(colp, &cwant));
15109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest));
151172e6a0cfSJed Brown 
151272e6a0cfSJed Brown   /* Invert row permutation to find out where my rows should go */
15139566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf));
15149566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant));
15159566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(rowsf));
151672e6a0cfSJed Brown   for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i;
15179566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
15189566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE));
151972e6a0cfSJed Brown 
152072e6a0cfSJed Brown   /* Invert column permutation to find out where my columns should go */
15219566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15229566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant));
15239566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
152472e6a0cfSJed Brown   for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i;
15259566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15269566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE));
15279566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
152872e6a0cfSJed Brown 
15299566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rowp, &rwant));
15309566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(colp, &cwant));
15319566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols));
153272e6a0cfSJed Brown 
153372e6a0cfSJed Brown   /* Find out where my gcols should go */
15349566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aB, NULL, &ng));
15359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ng, &gcdest));
15369566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
15379566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols));
15389566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
15399566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15409566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE));
15419566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
154272e6a0cfSJed Brown 
15439566063dSJacob Faibussowitsch   PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz));
15449566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15459566063dSJacob Faibussowitsch   PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
154672e6a0cfSJed Brown   for (i = 0; i < m; i++) {
1547131c27b5Sprj-     PetscInt    row = rdest[i];
1548131c27b5Sprj-     PetscMPIInt rowner;
15499566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner));
155072e6a0cfSJed Brown     for (j = ai[i]; j < ai[i + 1]; j++) {
1551131c27b5Sprj-       PetscInt    col = cdest[aj[j]];
1552131c27b5Sprj-       PetscMPIInt cowner;
15539566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */
155472e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
155572e6a0cfSJed Brown       else onnz[i]++;
155672e6a0cfSJed Brown     }
155772e6a0cfSJed Brown     for (j = bi[i]; j < bi[i + 1]; j++) {
1558131c27b5Sprj-       PetscInt    col = gcdest[bj[j]];
1559131c27b5Sprj-       PetscMPIInt cowner;
15609566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner));
156172e6a0cfSJed Brown       if (rowner == cowner) dnnz[i]++;
156272e6a0cfSJed Brown       else onnz[i]++;
156372e6a0cfSJed Brown     }
156472e6a0cfSJed Brown   }
15659566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15669566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE));
15679566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15689566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE));
15699566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&rowsf));
157072e6a0cfSJed Brown 
15719566063dSJacob Faibussowitsch   PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm));
15729566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aA, &aa));
15739566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(aB, &ba));
157472e6a0cfSJed Brown   for (i = 0; i < m; i++) {
157572e6a0cfSJed Brown     PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */
1576970468b0SJed Brown     PetscInt  j0, rowlen;
157772e6a0cfSJed Brown     rowlen = ai[i + 1] - ai[i];
1578970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */
1579970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]];
15809566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES));
1581970468b0SJed Brown     }
158272e6a0cfSJed Brown     rowlen = bi[i + 1] - bi[i];
1583970468b0SJed Brown     for (j0 = j = 0; j < rowlen; j0 = j) {
1584970468b0SJed Brown       for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]];
15859566063dSJacob Faibussowitsch       PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES));
1586970468b0SJed Brown     }
158772e6a0cfSJed Brown   }
15889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY));
15899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY));
15909566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done));
15919566063dSJacob Faibussowitsch   PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done));
15929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aA, &aa));
15939566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(aB, &ba));
15949566063dSJacob Faibussowitsch   PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz));
15959566063dSJacob Faibussowitsch   PetscCall(PetscFree3(work, rdest, cdest));
15969566063dSJacob Faibussowitsch   PetscCall(PetscFree(gcdest));
15979566063dSJacob Faibussowitsch   if (parcolp) PetscCall(ISDestroy(&colp));
159872e6a0cfSJed Brown   *B = Aperm;
15993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
160042e855d1Svictor }
160142e855d1Svictor 
1602ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
1603d71ae5a4SJacob Faibussowitsch {
1604c5e4d11fSDmitry Karpeev   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
1605c5e4d11fSDmitry Karpeev 
1606c5e4d11fSDmitry Karpeev   PetscFunctionBegin;
16079566063dSJacob Faibussowitsch   PetscCall(MatGetSize(aij->B, NULL, nghosts));
1608c5e4d11fSDmitry Karpeev   if (ghosts) *ghosts = aij->garray;
16093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1610c5e4d11fSDmitry Karpeev }
1611c5e4d11fSDmitry Karpeev 
1612ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1613d71ae5a4SJacob Faibussowitsch {
1614a66be287SLois Curfman McInnes   Mat_MPIAIJ    *mat = (Mat_MPIAIJ *)matin->data;
1615a66be287SLois Curfman McInnes   Mat            A = mat->A, B = mat->B;
16163966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
1617a66be287SLois Curfman McInnes 
16183a40ed3dSBarry Smith   PetscFunctionBegin;
16194e220ebcSLois Curfman McInnes   info->block_size = 1.0;
16209566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
16212205254eSKarl Rupp 
16229371c9d4SSatish Balay   isend[0] = info->nz_used;
16239371c9d4SSatish Balay   isend[1] = info->nz_allocated;
16249371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
16259371c9d4SSatish Balay   isend[3] = info->memory;
16269371c9d4SSatish Balay   isend[4] = info->mallocs;
16272205254eSKarl Rupp 
16289566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
16292205254eSKarl Rupp 
16309371c9d4SSatish Balay   isend[0] += info->nz_used;
16319371c9d4SSatish Balay   isend[1] += info->nz_allocated;
16329371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
16339371c9d4SSatish Balay   isend[3] += info->memory;
16349371c9d4SSatish Balay   isend[4] += info->mallocs;
1635a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
16364e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16374e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16384e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16394e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16404e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1641a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1642462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
16432205254eSKarl Rupp 
16444e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16454e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16464e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16474e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16484e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1649a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1650462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
16512205254eSKarl Rupp 
16524e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16534e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16544e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16554e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16564e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1657a66be287SLois Curfman McInnes   }
16584e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16594e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16604e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1662a66be287SLois Curfman McInnes }
1663a66be287SLois Curfman McInnes 
1664d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg)
1665d71ae5a4SJacob Faibussowitsch {
1666c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
1667c74985f6SBarry Smith 
16683a40ed3dSBarry Smith   PetscFunctionBegin;
166912c028f9SKris Buschelman   switch (op) {
1670512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
167112c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
167228b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1673a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
167412c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
16750ad02fcaSStefano Zampini   case MAT_USE_INODES:
167612c028f9SKris Buschelman   case MAT_IGNORE_ZERO_ENTRIES:
16771a2c6b5cSJunchao Zhang   case MAT_FORM_EXPLICIT_TRANSPOSE:
1678fa1f0d2cSMatthew G Knepley     MatCheckPreallocated(A, 1);
16799566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16809566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168112c028f9SKris Buschelman     break;
168212c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
168343674050SBarry Smith     MatCheckPreallocated(A, 1);
16844e0d8c25SBarry Smith     a->roworiented = flg;
16852205254eSKarl Rupp 
16869566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
16879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
168812c028f9SKris Buschelman     break;
1689d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1690d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1691d71ae5a4SJacob Faibussowitsch     break;
1692c8ca1fbcSVaclav Hapla   /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */
1693ffa07934SHong Zhang   case MAT_SPD:
169477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
169577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
1696bf108f30SBarry Smith   case MAT_HERMITIAN:
1697bf108f30SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1698b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1699b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1700b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
17019725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
170277e54ba9SKris Buschelman     break;
1703d71ae5a4SJacob Faibussowitsch   case MAT_SUBMAT_SINGLEIS:
1704d71ae5a4SJacob Faibussowitsch     A->submat_singleis = flg;
1705d71ae5a4SJacob Faibussowitsch     break;
1706d71ae5a4SJacob Faibussowitsch   default:
1707888c827cSStefano Zampini     break;
17083a40ed3dSBarry Smith   }
17093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1710c74985f6SBarry Smith }
1711c74985f6SBarry Smith 
1712d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1713d71ae5a4SJacob Faibussowitsch {
1714154123eaSLois Curfman McInnes   Mat_MPIAIJ  *mat = (Mat_MPIAIJ *)matin->data;
171587828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1716d0f46423SBarry Smith   PetscInt     i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart;
1717d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend;
1718b1d57f15SBarry Smith   PetscInt    *cmap, *idx_p;
171939e00950SLois Curfman McInnes 
17203a40ed3dSBarry Smith   PetscFunctionBegin;
172128b400f6SJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
17227a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
17237a0afa10SBarry Smith 
172470f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
17257a0afa10SBarry Smith     /*
17267a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
17277a0afa10SBarry Smith     */
17287a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data;
1729b1d57f15SBarry Smith     PetscInt    max = 1, tmp;
1730d0f46423SBarry Smith     for (i = 0; i < matin->rmap->n; i++) {
17317a0afa10SBarry Smith       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
17322205254eSKarl Rupp       if (max < tmp) max = tmp;
17337a0afa10SBarry Smith     }
17349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices));
17357a0afa10SBarry Smith   }
17367a0afa10SBarry Smith 
1737aed4548fSBarry Smith   PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows");
1738abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
173939e00950SLois Curfman McInnes 
17409371c9d4SSatish Balay   pvA = &vworkA;
17419371c9d4SSatish Balay   pcA = &cworkA;
17429371c9d4SSatish Balay   pvB = &vworkB;
17439371c9d4SSatish Balay   pcB = &cworkB;
17449371c9d4SSatish Balay   if (!v) {
17459371c9d4SSatish Balay     pvA = NULL;
17469371c9d4SSatish Balay     pvB = NULL;
17479371c9d4SSatish Balay   }
17489371c9d4SSatish Balay   if (!idx) {
17499371c9d4SSatish Balay     pcA = NULL;
17509371c9d4SSatish Balay     if (!v) pcB = NULL;
17519371c9d4SSatish Balay   }
17529566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
17539566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1754154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1755154123eaSLois Curfman McInnes 
175670f0671dSBarry Smith   cmap = mat->garray;
1757154123eaSLois Curfman McInnes   if (v || idx) {
1758154123eaSLois Curfman McInnes     if (nztot) {
1759154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
1760b1d57f15SBarry Smith       PetscInt imark = -1;
1761154123eaSLois Curfman McInnes       if (v) {
176270f0671dSBarry Smith         *v = v_p = mat->rowvalues;
176339e00950SLois Curfman McInnes         for (i = 0; i < nzB; i++) {
176470f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i];
1765154123eaSLois Curfman McInnes           else break;
1766154123eaSLois Curfman McInnes         }
1767154123eaSLois Curfman McInnes         imark = i;
176870f0671dSBarry Smith         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
176970f0671dSBarry Smith         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1770154123eaSLois Curfman McInnes       }
1771154123eaSLois Curfman McInnes       if (idx) {
177270f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
177370f0671dSBarry Smith         if (imark > -1) {
1774ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]];
177570f0671dSBarry Smith         } else {
1776154123eaSLois Curfman McInnes           for (i = 0; i < nzB; i++) {
177770f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]];
1778154123eaSLois Curfman McInnes             else break;
1779154123eaSLois Curfman McInnes           }
1780154123eaSLois Curfman McInnes           imark = i;
178170f0671dSBarry Smith         }
178270f0671dSBarry Smith         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i];
178370f0671dSBarry Smith         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]];
178439e00950SLois Curfman McInnes       }
17853f97c4b0SBarry Smith     } else {
1786f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1787f4259b30SLisandro Dalcin       if (v) *v = NULL;
17881ca473b0SSatish Balay     }
1789154123eaSLois Curfman McInnes   }
179039e00950SLois Curfman McInnes   *nz = nztot;
17919566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
17929566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
17933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
179439e00950SLois Curfman McInnes }
179539e00950SLois Curfman McInnes 
1796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1797d71ae5a4SJacob Faibussowitsch {
17987a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
17993a40ed3dSBarry Smith 
18003a40ed3dSBarry Smith   PetscFunctionBegin;
180128b400f6SJacob Faibussowitsch   PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first");
18027a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
18033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
180439e00950SLois Curfman McInnes }
180539e00950SLois Curfman McInnes 
1806ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm)
1807d71ae5a4SJacob Faibussowitsch {
1808855ac2c5SLois Curfman McInnes   Mat_MPIAIJ      *aij  = (Mat_MPIAIJ *)mat->data;
1809ec8511deSBarry Smith   Mat_SeqAIJ      *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data;
181075dbe01dSPierre Jolivet   PetscInt         i, j;
1811329f5518SBarry Smith   PetscReal        sum = 0.0;
1812fff043a9SJunchao Zhang   const MatScalar *v, *amata, *bmata;
181304ca555eSLois Curfman McInnes 
18143a40ed3dSBarry Smith   PetscFunctionBegin;
181517699dbbSLois Curfman McInnes   if (aij->size == 1) {
18169566063dSJacob Faibussowitsch     PetscCall(MatNorm(aij->A, type, norm));
181737fa93a5SLois Curfman McInnes   } else {
18189566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata));
18199566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata));
182004ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
1821fff043a9SJunchao Zhang       v = amata;
182204ca555eSLois Curfman McInnes       for (i = 0; i < amat->nz; i++) {
18239371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18249371c9d4SSatish Balay         v++;
182504ca555eSLois Curfman McInnes       }
1826fff043a9SJunchao Zhang       v = bmata;
182704ca555eSLois Curfman McInnes       for (i = 0; i < bmat->nz; i++) {
18289371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
18299371c9d4SSatish Balay         v++;
183004ca555eSLois Curfman McInnes       }
1831462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
18328f1a2a5eSBarry Smith       *norm = PetscSqrtReal(*norm);
18339566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz));
18343a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
18358ba8550cSPierre Jolivet       Vec          col, bcol;
183675dbe01dSPierre Jolivet       PetscScalar *array;
1837b1d57f15SBarry Smith       PetscInt    *jj, *garray = aij->garray;
183875dbe01dSPierre Jolivet 
183975dbe01dSPierre Jolivet       PetscCall(MatCreateVecs(mat, &col, NULL));
184075dbe01dSPierre Jolivet       PetscCall(VecSet(col, 0.0));
184175dbe01dSPierre Jolivet       PetscCall(VecGetArrayWrite(col, &array));
18429371c9d4SSatish Balay       v  = amata;
18439371c9d4SSatish Balay       jj = amat->j;
184475dbe01dSPierre Jolivet       for (j = 0; j < amat->nz; j++) array[*jj++] += PetscAbsScalar(*v++);
184575dbe01dSPierre Jolivet       PetscCall(VecRestoreArrayWrite(col, &array));
18468ba8550cSPierre Jolivet       PetscCall(MatCreateVecs(aij->B, &bcol, NULL));
18478ba8550cSPierre Jolivet       PetscCall(VecSet(bcol, 0.0));
18488ba8550cSPierre Jolivet       PetscCall(VecGetArrayWrite(bcol, &array));
18499371c9d4SSatish Balay       v  = bmata;
18509371c9d4SSatish Balay       jj = bmat->j;
18518ba8550cSPierre Jolivet       for (j = 0; j < bmat->nz; j++) array[*jj++] += PetscAbsScalar(*v++);
18528ba8550cSPierre Jolivet       PetscCall(VecSetValues(col, aij->B->cmap->n, garray, array, ADD_VALUES));
18538ba8550cSPierre Jolivet       PetscCall(VecRestoreArrayWrite(bcol, &array));
18548ba8550cSPierre Jolivet       PetscCall(VecDestroy(&bcol));
185575dbe01dSPierre Jolivet       PetscCall(VecAssemblyBegin(col));
185675dbe01dSPierre Jolivet       PetscCall(VecAssemblyEnd(col));
185775dbe01dSPierre Jolivet       PetscCall(VecNorm(col, NORM_INFINITY, norm));
185875dbe01dSPierre Jolivet       PetscCall(VecDestroy(&col));
18593a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1860329f5518SBarry Smith       PetscReal ntemp = 0.0;
1861d0f46423SBarry Smith       for (j = 0; j < aij->A->rmap->n; j++) {
18628e3a54c0SPierre Jolivet         v   = PetscSafePointerPlusOffset(amata, amat->i[j]);
186304ca555eSLois Curfman McInnes         sum = 0.0;
186404ca555eSLois Curfman McInnes         for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) {
18659371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18669371c9d4SSatish Balay           v++;
186704ca555eSLois Curfman McInnes         }
18688e3a54c0SPierre Jolivet         v = PetscSafePointerPlusOffset(bmata, bmat->i[j]);
186904ca555eSLois Curfman McInnes         for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) {
18709371c9d4SSatish Balay           sum += PetscAbsScalar(*v);
18719371c9d4SSatish Balay           v++;
187204ca555eSLois Curfman McInnes         }
1873515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
187404ca555eSLois Curfman McInnes       }
1875462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
18769566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0)));
1877ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm");
18789566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata));
18799566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata));
188037fa93a5SLois Curfman McInnes   }
18813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1882855ac2c5SLois Curfman McInnes }
1883855ac2c5SLois Curfman McInnes 
1884ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout)
1885d71ae5a4SJacob Faibussowitsch {
1886a8661f62Sandi selinger   Mat_MPIAIJ      *a    = (Mat_MPIAIJ *)A->data, *b;
1887a8661f62Sandi selinger   Mat_SeqAIJ      *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag;
1888071fcb05SBarry Smith   PetscInt         M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol;
1889071fcb05SBarry Smith   const PetscInt  *ai, *aj, *bi, *bj, *B_diag_i;
1890a8661f62Sandi selinger   Mat              B, A_diag, *B_diag;
1891ce496241SStefano Zampini   const MatScalar *pbv, *bv;
1892b7c46309SBarry Smith 
18933a40ed3dSBarry Smith   PetscFunctionBegin;
18947fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
18959371c9d4SSatish Balay   ma = A->rmap->n;
18969371c9d4SSatish Balay   na = A->cmap->n;
18979371c9d4SSatish Balay   mb = a->B->rmap->n;
18989371c9d4SSatish Balay   nb = a->B->cmap->n;
18999371c9d4SSatish Balay   ai = Aloc->i;
19009371c9d4SSatish Balay   aj = Aloc->j;
19019371c9d4SSatish Balay   bi = Bloc->i;
19029371c9d4SSatish Balay   bj = Bloc->j;
1903fc73b1b3SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
190480bcc5a1SJed Brown     PetscInt            *d_nnz, *g_nnz, *o_nnz;
190580bcc5a1SJed Brown     PetscSFNode         *oloc;
1906713c93b4SJed Brown     PETSC_UNUSED PetscSF sf;
190780bcc5a1SJed Brown 
19089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc));
190980bcc5a1SJed Brown     /* compute d_nnz for preallocation */
19109566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(d_nnz, na));
1911cbc6b225SStefano Zampini     for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++;
191280bcc5a1SJed Brown     /* compute local off-diagonal contributions */
19139566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(g_nnz, nb));
191480bcc5a1SJed Brown     for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++;
191580bcc5a1SJed Brown     /* map those to global */
19169566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
19179566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray));
19189566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(sf));
19199566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(o_nnz, na));
192057168dbeSPierre Jolivet     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
192157168dbeSPierre Jolivet     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM));
19229566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&sf));
1923d4bb536fSBarry Smith 
19249566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
19259566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
192658b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs));
19279566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
19289566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
19299566063dSJacob Faibussowitsch     PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc));
1930fc4dec0aSBarry Smith   } else {
1931fc4dec0aSBarry Smith     B = *matout;
19329566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE));
1933fc4dec0aSBarry Smith   }
1934b7c46309SBarry Smith 
1935f79cb1a0Sandi selinger   b           = (Mat_MPIAIJ *)B->data;
1936a8661f62Sandi selinger   A_diag      = a->A;
1937a8661f62Sandi selinger   B_diag      = &b->A;
1938a8661f62Sandi selinger   sub_B_diag  = (Mat_SeqAIJ *)(*B_diag)->data;
1939a8661f62Sandi selinger   A_diag_ncol = A_diag->cmap->N;
1940a8661f62Sandi selinger   B_diag_ilen = sub_B_diag->ilen;
1941a8661f62Sandi selinger   B_diag_i    = sub_B_diag->i;
1942f79cb1a0Sandi selinger 
1943f79cb1a0Sandi selinger   /* Set ilen for diagonal of B */
1944ad540459SPierre Jolivet   for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i];
1945f79cb1a0Sandi selinger 
19464cf0e950SBarry Smith   /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done
1947a8661f62Sandi selinger   very quickly (=without using MatSetValues), because all writes are local. */
19487fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag));
19499566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag));
1950f79cb1a0Sandi selinger 
1951b7c46309SBarry Smith   /* copy over the B part */
19529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[mb], &cols));
19539566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &bv));
1954ce496241SStefano Zampini   pbv = bv;
1955d0f46423SBarry Smith   row = A->rmap->rstart;
19562205254eSKarl Rupp   for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]];
195761a2fbbaSHong Zhang   cols_tmp = cols;
1958da668accSHong Zhang   for (i = 0; i < mb; i++) {
1959da668accSHong Zhang     ncol = bi[i + 1] - bi[i];
19609566063dSJacob Faibussowitsch     PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES));
19612205254eSKarl Rupp     row++;
1962720a2405SPierre Jolivet     if (pbv) pbv += ncol;
1963720a2405SPierre Jolivet     if (cols_tmp) cols_tmp += ncol;
1964b7c46309SBarry Smith   }
19659566063dSJacob Faibussowitsch   PetscCall(PetscFree(cols));
19669566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv));
1967fc73b1b3SBarry Smith 
19689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
19699566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
1970cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
19710de55854SLois Curfman McInnes     *matout = B;
19720de55854SLois Curfman McInnes   } else {
19739566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A, &B));
19740de55854SLois Curfman McInnes   }
19753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1976b7c46309SBarry Smith }
1977b7c46309SBarry Smith 
1978ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr)
1979d71ae5a4SJacob Faibussowitsch {
19804b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
19814b967eb1SSatish Balay   Mat         a = aij->A, b = aij->B;
1982b1d57f15SBarry Smith   PetscInt    s1, s2, s3;
1983a008b906SSatish Balay 
19843a40ed3dSBarry Smith   PetscFunctionBegin;
19859566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
19864b967eb1SSatish Balay   if (rr) {
19879566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
198808401ef6SPierre Jolivet     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
19894b967eb1SSatish Balay     /* Overlap communication with computation. */
19909566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1991a008b906SSatish Balay   }
19924b967eb1SSatish Balay   if (ll) {
19939566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
199408401ef6SPierre Jolivet     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1995dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
19964b967eb1SSatish Balay   }
19974b967eb1SSatish Balay   /* scale  the diagonal block */
1998dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
19994b967eb1SSatish Balay 
20004b967eb1SSatish Balay   if (rr) {
20014b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
20029566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD));
2003dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec);
20044b967eb1SSatish Balay   }
20053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2006a008b906SSatish Balay }
2007a008b906SSatish Balay 
2008ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A)
2009d71ae5a4SJacob Faibussowitsch {
2010bb5a7306SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
20113a40ed3dSBarry Smith 
20123a40ed3dSBarry Smith   PetscFunctionBegin;
20139566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
20143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2015bb5a7306SBarry Smith }
2016bb5a7306SBarry Smith 
2017ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag)
2018d71ae5a4SJacob Faibussowitsch {
2019d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data;
2020d4bb536fSBarry Smith   Mat         a, b, c, d;
2021ace3abfcSBarry Smith   PetscBool   flg;
2022d4bb536fSBarry Smith 
20233a40ed3dSBarry Smith   PetscFunctionBegin;
20249371c9d4SSatish Balay   a = matA->A;
20259371c9d4SSatish Balay   b = matA->B;
20269371c9d4SSatish Balay   c = matB->A;
20279371c9d4SSatish Balay   d = matB->B;
2028d4bb536fSBarry Smith 
20299566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
203048a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
20315440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
20323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2033d4bb536fSBarry Smith }
2034d4bb536fSBarry Smith 
2035ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str)
2036d71ae5a4SJacob Faibussowitsch {
2037cb5b572fSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2038cb5b572fSBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
2039cb5b572fSBarry Smith 
2040cb5b572fSBarry Smith   PetscFunctionBegin;
204133f4a19fSKris Buschelman   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
204233f4a19fSKris Buschelman   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
2043cb5b572fSBarry Smith     /* because of the column compression in the off-processor part of the matrix a->B,
2044cb5b572fSBarry Smith        the number of columns in a->B and b->B may be different, hence we cannot call
2045cb5b572fSBarry Smith        the MatCopy() directly on the two parts. If need be, we can provide a more
2046cb5b572fSBarry Smith        efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices
2047cb5b572fSBarry Smith        then copying the submatrices */
20489566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
2049cb5b572fSBarry Smith   } else {
20509566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
20519566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
2052cb5b572fSBarry Smith   }
20539566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
20543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2055cb5b572fSBarry Smith }
2056cb5b572fSBarry Smith 
2057001ddc4fSHong Zhang /*
2058001ddc4fSHong Zhang    Computes the number of nonzeros per row needed for preallocation when X and Y
2059001ddc4fSHong Zhang    have different nonzero structure.
2060001ddc4fSHong Zhang */
2061d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz)
2062d71ae5a4SJacob Faibussowitsch {
2063001ddc4fSHong Zhang   PetscInt i, j, k, nzx, nzy;
206495b7e79eSJed Brown 
206595b7e79eSJed Brown   PetscFunctionBegin;
206695b7e79eSJed Brown   /* Set the number of nonzeros in the new matrix */
206795b7e79eSJed Brown   for (i = 0; i < m; i++) {
20688e3a54c0SPierre Jolivet     const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]);
2069001ddc4fSHong Zhang     nzx    = xi[i + 1] - xi[i];
2070001ddc4fSHong Zhang     nzy    = yi[i + 1] - yi[i];
207195b7e79eSJed Brown     nnz[i] = 0;
207295b7e79eSJed Brown     for (j = 0, k = 0; j < nzx; j++) {                                /* Point in X */
2073001ddc4fSHong Zhang       for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */
2074001ddc4fSHong Zhang       if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++;             /* Skip duplicate */
207595b7e79eSJed Brown       nnz[i]++;
207695b7e79eSJed Brown     }
207795b7e79eSJed Brown     for (; k < nzy; k++) nnz[i]++;
207895b7e79eSJed Brown   }
20793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
208095b7e79eSJed Brown }
208195b7e79eSJed Brown 
2082001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */
2083d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
2084d71ae5a4SJacob Faibussowitsch {
2085001ddc4fSHong Zhang   PetscInt    m = Y->rmap->N;
2086001ddc4fSHong Zhang   Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data;
2087001ddc4fSHong Zhang   Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data;
2088001ddc4fSHong Zhang 
2089001ddc4fSHong Zhang   PetscFunctionBegin;
20909566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
20913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2092001ddc4fSHong Zhang }
2093001ddc4fSHong Zhang 
2094ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
2095d71ae5a4SJacob Faibussowitsch {
2096ac90fabeSBarry Smith   Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data;
2097ac90fabeSBarry Smith 
2098ac90fabeSBarry Smith   PetscFunctionBegin;
2099ac90fabeSBarry Smith   if (str == SAME_NONZERO_PATTERN) {
21009566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->A, a, xx->A, str));
21019566063dSJacob Faibussowitsch     PetscCall(MatAXPY(yy->B, a, xx->B, str));
2102ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
21039566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
2104ac90fabeSBarry Smith   } else {
21059f5f6813SShri Abhyankar     Mat       B;
21069f5f6813SShri Abhyankar     PetscInt *nnz_d, *nnz_o;
2107d9d719b4SStefano Zampini 
21089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
21099566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
21109566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
21119566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
21129566063dSJacob Faibussowitsch     PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap));
21139566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)Y)->type_name));
21149566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d));
21159566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
21169566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o));
21179566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
21189566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
21199566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
21209566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
2121ac90fabeSBarry Smith   }
21223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2123ac90fabeSBarry Smith }
2124ac90fabeSBarry Smith 
21252726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat);
2126354c94deSBarry Smith 
2127ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat)
2128d71ae5a4SJacob Faibussowitsch {
2129354c94deSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
2130354c94deSBarry Smith 
213165d0d443SPierre Jolivet   PetscFunctionBegin;
21329566063dSJacob Faibussowitsch   PetscCall(MatConjugate_SeqAIJ(aij->A));
21339566063dSJacob Faibussowitsch   PetscCall(MatConjugate_SeqAIJ(aij->B));
21343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2135354c94deSBarry Smith }
2136354c94deSBarry Smith 
2137ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A)
2138d71ae5a4SJacob Faibussowitsch {
213999cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
214099cafbc1SBarry Smith 
214199cafbc1SBarry Smith   PetscFunctionBegin;
21429566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
21439566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
21443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
214599cafbc1SBarry Smith }
214699cafbc1SBarry Smith 
2147ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A)
2148d71ae5a4SJacob Faibussowitsch {
214999cafbc1SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
215099cafbc1SBarry Smith 
215199cafbc1SBarry Smith   PetscFunctionBegin;
21529566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
21539566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
21543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215599cafbc1SBarry Smith }
215699cafbc1SBarry Smith 
2157ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2158d71ae5a4SJacob Faibussowitsch {
2159c91732d9SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
2160475b8b61SHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n;
216162e5df07SMark Adams   PetscScalar       *vv;
2162475b8b61SHong Zhang   Vec                vB, vA;
216362e5df07SMark Adams   const PetscScalar *va, *vb;
2164c91732d9SHong Zhang 
2165c91732d9SHong Zhang   PetscFunctionBegin;
2166c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
21679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
2168475b8b61SHong Zhang 
216962e5df07SMark Adams   PetscCall(VecGetArrayRead(vA, &va));
2170c91732d9SHong Zhang   if (idx) {
2171475b8b61SHong Zhang     for (i = 0; i < m; i++) {
2172d0f46423SBarry Smith       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2173c91732d9SHong Zhang     }
2174c91732d9SHong Zhang   }
2175c91732d9SHong Zhang 
2176c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
21779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
21789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
2179c91732d9SHong Zhang 
21809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
21819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
2182475b8b61SHong Zhang   for (i = 0; i < m; i++) {
2183c91732d9SHong Zhang     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
2184475b8b61SHong Zhang       vv[i] = vb[i];
2185c91732d9SHong Zhang       if (idx) idx[i] = a->garray[idxb[i]];
2186475b8b61SHong Zhang     } else {
2187475b8b61SHong Zhang       vv[i] = va[i];
21889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]];
2189c91732d9SHong Zhang     }
2190c91732d9SHong Zhang   }
219162e5df07SMark Adams   PetscCall(VecRestoreArrayWrite(v, &vv));
219262e5df07SMark Adams   PetscCall(VecRestoreArrayRead(vA, &va));
21939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
21949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
21959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
21969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
21973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2198c91732d9SHong Zhang }
2199c91732d9SHong Zhang 
2200eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v)
2201eede4a3fSMark Adams {
2202eede4a3fSMark Adams   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2203eede4a3fSMark Adams   Vec         vB, vA;
2204eede4a3fSMark Adams 
2205eede4a3fSMark Adams   PetscFunctionBegin;
2206c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
2207eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->A, vA));
2208c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
2209eede4a3fSMark Adams   PetscCall(MatGetRowSumAbs(a->B, vB));
2210eede4a3fSMark Adams   PetscCall(VecAXPY(vA, 1.0, vB));
2211eede4a3fSMark Adams   PetscCall(VecDestroy(&vB));
2212eede4a3fSMark Adams   PetscCall(VecCopy(vA, v));
2213eede4a3fSMark Adams   PetscCall(VecDestroy(&vA));
2214eede4a3fSMark Adams   PetscFunctionReturn(PETSC_SUCCESS);
2215eede4a3fSMark Adams }
2216eede4a3fSMark Adams 
2217ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2218d71ae5a4SJacob Faibussowitsch {
2219f07e67edSHong Zhang   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2220f07e67edSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2221f07e67edSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2222f07e67edSHong Zhang   PetscInt          *cmap = mat->garray;
2223f07e67edSHong Zhang   PetscInt          *diagIdx, *offdiagIdx;
2224f07e67edSHong Zhang   Vec                diagV, offdiagV;
2225ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2226ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2227f07e67edSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2228f07e67edSHong Zhang   Mat                B = mat->B;
2229f07e67edSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2230c87e5d42SMatthew Knepley 
2231c87e5d42SMatthew Knepley   PetscFunctionBegin;
2232f07e67edSHong Zhang   /* When a process holds entire A and other processes have no entry */
2233f07e67edSHong Zhang   if (A->cmap->N == n) {
22349566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
22359566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
22369566063dSJacob Faibussowitsch     PetscCall(MatGetRowMinAbs(mat->A, diagV, idx));
22379566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
22389566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
22393ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2240f07e67edSHong Zhang   } else if (n == 0) {
2241f07e67edSHong Zhang     if (m) {
22429566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
22439371c9d4SSatish Balay       for (r = 0; r < m; r++) {
22449371c9d4SSatish Balay         a[r] = 0.0;
22459371c9d4SSatish Balay         if (idx) idx[r] = -1;
22469371c9d4SSatish Balay       }
22479566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2248f07e67edSHong Zhang     }
22493ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2250f07e67edSHong Zhang   }
2251f07e67edSHong Zhang 
22529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
22539566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
22549566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
22559566063dSJacob Faibussowitsch   PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx));
2256f07e67edSHong Zhang 
2257f07e67edSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
22589566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2259ce496241SStefano Zampini   ba = bav;
2260f07e67edSHong Zhang   bi = b->i;
2261f07e67edSHong Zhang   bj = b->j;
22629566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2263f07e67edSHong Zhang   for (r = 0; r < m; r++) {
2264f07e67edSHong Zhang     ncols = bi[r + 1] - bi[r];
2265f07e67edSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
22669371c9d4SSatish Balay       offdiagA[r]   = *ba;
22679371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2268f07e67edSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2269f07e67edSHong Zhang       offdiagA[r] = 0.0;
2270f07e67edSHong Zhang 
2271f07e67edSHong Zhang       /* Find first hole in the cmap */
2272f07e67edSHong Zhang       for (j = 0; j < ncols; j++) {
2273f07e67edSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2274f07e67edSHong Zhang         if (col > j && j < cstart) {
2275f07e67edSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2276f07e67edSHong Zhang           break;
2277f07e67edSHong Zhang         } else if (col > j + n && j >= cstart) {
2278f07e67edSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2279f07e67edSHong Zhang           break;
2280f07e67edSHong Zhang         }
2281f07e67edSHong Zhang       }
22824e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2283f07e67edSHong Zhang         /* a hole is outside compressed Bcols */
2284f07e67edSHong Zhang         if (ncols == 0) {
2285f07e67edSHong Zhang           if (cstart) {
2286f07e67edSHong Zhang             offdiagIdx[r] = 0;
2287f07e67edSHong Zhang           } else offdiagIdx[r] = cend;
2288f07e67edSHong Zhang         } else { /* ncols > 0 */
2289f07e67edSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2290f07e67edSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2291f07e67edSHong Zhang         }
2292f07e67edSHong Zhang       }
2293f07e67edSHong Zhang     }
2294f07e67edSHong Zhang 
2295f07e67edSHong Zhang     for (j = 0; j < ncols; j++) {
22969371c9d4SSatish Balay       if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) {
22979371c9d4SSatish Balay         offdiagA[r]   = *ba;
22989371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
22999371c9d4SSatish Balay       }
23009371c9d4SSatish Balay       ba++;
23019371c9d4SSatish Balay       bj++;
2302f07e67edSHong Zhang     }
2303f07e67edSHong Zhang   }
2304f07e67edSHong Zhang 
23059566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
23069566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2307f07e67edSHong Zhang   for (r = 0; r < m; ++r) {
2308f07e67edSHong Zhang     if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) {
2309f07e67edSHong Zhang       a[r] = diagA[r];
2310f07e67edSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2311f07e67edSHong Zhang     } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) {
2312f07e67edSHong Zhang       a[r] = diagA[r];
2313c87e5d42SMatthew Knepley       if (idx) {
2314f07e67edSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2315f07e67edSHong Zhang           idx[r] = cstart + diagIdx[r];
2316f07e67edSHong Zhang         } else idx[r] = offdiagIdx[r];
2317f07e67edSHong Zhang       }
2318f07e67edSHong Zhang     } else {
2319f07e67edSHong Zhang       a[r] = offdiagA[r];
2320f07e67edSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2321c87e5d42SMatthew Knepley     }
2322c87e5d42SMatthew Knepley   }
23239566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
23249566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
23259566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
23269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
23279566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
23289566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
23299566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
23303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2331c87e5d42SMatthew Knepley }
2332c87e5d42SMatthew Knepley 
2333ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2334d71ae5a4SJacob Faibussowitsch {
233503bc72f1SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
2336fa213d2fSHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
2337fa213d2fSHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
233803bc72f1SMatthew Knepley   PetscInt          *cmap = mat->garray;
233903bc72f1SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
234003bc72f1SMatthew Knepley   Vec                diagV, offdiagV;
2341ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2342ce496241SStefano Zampini   const PetscScalar *ba, *bav;
2343fa213d2fSHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
2344fa213d2fSHong Zhang   Mat                B = mat->B;
2345fa213d2fSHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
234603bc72f1SMatthew Knepley 
234703bc72f1SMatthew Knepley   PetscFunctionBegin;
2348fa213d2fSHong Zhang   /* When a process holds entire A and other processes have no entry */
2349fa213d2fSHong Zhang   if (A->cmap->N == n) {
23509566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
23519566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
23529566063dSJacob Faibussowitsch     PetscCall(MatGetRowMin(mat->A, diagV, idx));
23539566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
23549566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
23553ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2356fa213d2fSHong Zhang   } else if (n == 0) {
2357fa213d2fSHong Zhang     if (m) {
23589566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
23599371c9d4SSatish Balay       for (r = 0; r < m; r++) {
23609371c9d4SSatish Balay         a[r] = PETSC_MAX_REAL;
23619371c9d4SSatish Balay         if (idx) idx[r] = -1;
23629371c9d4SSatish Balay       }
23639566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
2364fa213d2fSHong Zhang     }
23653ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2366fa213d2fSHong Zhang   }
2367fa213d2fSHong Zhang 
23689566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx));
23699566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
23709566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
23719566063dSJacob Faibussowitsch   PetscCall(MatGetRowMin(mat->A, diagV, diagIdx));
2372fa213d2fSHong Zhang 
2373fa213d2fSHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
23749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2375ce496241SStefano Zampini   ba = bav;
2376fa213d2fSHong Zhang   bi = b->i;
2377fa213d2fSHong Zhang   bj = b->j;
23789566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
2379fa213d2fSHong Zhang   for (r = 0; r < m; r++) {
2380fa213d2fSHong Zhang     ncols = bi[r + 1] - bi[r];
2381fa213d2fSHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
23829371c9d4SSatish Balay       offdiagA[r]   = *ba;
23839371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
2384fa213d2fSHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
2385fa213d2fSHong Zhang       offdiagA[r] = 0.0;
2386fa213d2fSHong Zhang 
2387fa213d2fSHong Zhang       /* Find first hole in the cmap */
2388fa213d2fSHong Zhang       for (j = 0; j < ncols; j++) {
2389fa213d2fSHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
2390fa213d2fSHong Zhang         if (col > j && j < cstart) {
2391fa213d2fSHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
2392fa213d2fSHong Zhang           break;
2393fa213d2fSHong Zhang         } else if (col > j + n && j >= cstart) {
2394fa213d2fSHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
2395fa213d2fSHong Zhang           break;
2396fa213d2fSHong Zhang         }
2397fa213d2fSHong Zhang       }
23984e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
2399fa213d2fSHong Zhang         /* a hole is outside compressed Bcols */
2400fa213d2fSHong Zhang         if (ncols == 0) {
2401fa213d2fSHong Zhang           if (cstart) {
2402fa213d2fSHong Zhang             offdiagIdx[r] = 0;
2403fa213d2fSHong Zhang           } else offdiagIdx[r] = cend;
2404fa213d2fSHong Zhang         } else { /* ncols > 0 */
2405fa213d2fSHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
2406fa213d2fSHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
2407fa213d2fSHong Zhang         }
2408fa213d2fSHong Zhang       }
2409fa213d2fSHong Zhang     }
2410fa213d2fSHong Zhang 
2411fa213d2fSHong Zhang     for (j = 0; j < ncols; j++) {
24129371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) {
24139371c9d4SSatish Balay         offdiagA[r]   = *ba;
24149371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
24159371c9d4SSatish Balay       }
24169371c9d4SSatish Balay       ba++;
24179371c9d4SSatish Balay       bj++;
2418fa213d2fSHong Zhang     }
2419fa213d2fSHong Zhang   }
2420fa213d2fSHong Zhang 
24219566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
24229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
2423fa213d2fSHong Zhang   for (r = 0; r < m; ++r) {
2424fa213d2fSHong Zhang     if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) {
242503bc72f1SMatthew Knepley       a[r] = diagA[r];
2426fa213d2fSHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
2427fa213d2fSHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
2428fa213d2fSHong Zhang       a[r] = diagA[r];
2429fa213d2fSHong Zhang       if (idx) {
2430fa213d2fSHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
243103bc72f1SMatthew Knepley           idx[r] = cstart + diagIdx[r];
2432fa213d2fSHong Zhang         } else idx[r] = offdiagIdx[r];
2433fa213d2fSHong Zhang       }
243403bc72f1SMatthew Knepley     } else {
243503bc72f1SMatthew Knepley       a[r] = offdiagA[r];
2436fa213d2fSHong Zhang       if (idx) idx[r] = offdiagIdx[r];
243703bc72f1SMatthew Knepley     }
243803bc72f1SMatthew Knepley   }
24399566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
24409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
24419566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
24429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
24439566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
24449566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
24459566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
24463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
244703bc72f1SMatthew Knepley }
244803bc72f1SMatthew Knepley 
2449ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[])
2450d71ae5a4SJacob Faibussowitsch {
2451c87e5d42SMatthew Knepley   Mat_MPIAIJ        *mat = (Mat_MPIAIJ *)A->data;
24521a254869SHong Zhang   PetscInt           m = A->rmap->n, n = A->cmap->n;
24531a254869SHong Zhang   PetscInt           cstart = A->cmap->rstart, cend = A->cmap->rend;
2454c87e5d42SMatthew Knepley   PetscInt          *cmap = mat->garray;
2455c87e5d42SMatthew Knepley   PetscInt          *diagIdx, *offdiagIdx;
2456c87e5d42SMatthew Knepley   Vec                diagV, offdiagV;
2457ce496241SStefano Zampini   PetscScalar       *a, *diagA, *offdiagA;
2458ce496241SStefano Zampini   const PetscScalar *ba, *bav;
24591a254869SHong Zhang   PetscInt           r, j, col, ncols, *bi, *bj;
24601a254869SHong Zhang   Mat                B = mat->B;
24611a254869SHong Zhang   Mat_SeqAIJ        *b = (Mat_SeqAIJ *)B->data;
2462c87e5d42SMatthew Knepley 
2463c87e5d42SMatthew Knepley   PetscFunctionBegin;
24641a254869SHong Zhang   /* When a process holds entire A and other processes have no entry */
24651a254869SHong Zhang   if (A->cmap->N == n) {
24669566063dSJacob Faibussowitsch     PetscCall(VecGetArrayWrite(v, &diagA));
24679566063dSJacob Faibussowitsch     PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV));
24689566063dSJacob Faibussowitsch     PetscCall(MatGetRowMax(mat->A, diagV, idx));
24699566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&diagV));
24709566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayWrite(v, &diagA));
24713ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24721a254869SHong Zhang   } else if (n == 0) {
24731a254869SHong Zhang     if (m) {
24749566063dSJacob Faibussowitsch       PetscCall(VecGetArrayWrite(v, &a));
24759371c9d4SSatish Balay       for (r = 0; r < m; r++) {
24769371c9d4SSatish Balay         a[r] = PETSC_MIN_REAL;
24779371c9d4SSatish Balay         if (idx) idx[r] = -1;
24789371c9d4SSatish Balay       }
24799566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayWrite(v, &a));
24801a254869SHong Zhang     }
24813ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
24821a254869SHong Zhang   }
24831a254869SHong Zhang 
24849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx));
24859566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV));
24869566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV));
24879566063dSJacob Faibussowitsch   PetscCall(MatGetRowMax(mat->A, diagV, diagIdx));
24881a254869SHong Zhang 
24891a254869SHong Zhang   /* Get offdiagIdx[] for implicit 0.0 */
24909566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &bav));
2491ce496241SStefano Zampini   ba = bav;
24921a254869SHong Zhang   bi = b->i;
24931a254869SHong Zhang   bj = b->j;
24949566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(offdiagV, &offdiagA));
24951a254869SHong Zhang   for (r = 0; r < m; r++) {
24961a254869SHong Zhang     ncols = bi[r + 1] - bi[r];
24971a254869SHong Zhang     if (ncols == A->cmap->N - n) { /* Brow is dense */
24989371c9d4SSatish Balay       offdiagA[r]   = *ba;
24999371c9d4SSatish Balay       offdiagIdx[r] = cmap[0];
25001a254869SHong Zhang     } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */
25011a254869SHong Zhang       offdiagA[r] = 0.0;
25021a254869SHong Zhang 
25031a254869SHong Zhang       /* Find first hole in the cmap */
25041a254869SHong Zhang       for (j = 0; j < ncols; j++) {
25051a254869SHong Zhang         col = cmap[bj[j]]; /* global column number = cmap[B column number] */
25061a254869SHong Zhang         if (col > j && j < cstart) {
25071a254869SHong Zhang           offdiagIdx[r] = j; /* global column number of first implicit 0.0 */
25081a254869SHong Zhang           break;
25091a254869SHong Zhang         } else if (col > j + n && j >= cstart) {
25101a254869SHong Zhang           offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */
25111a254869SHong Zhang           break;
25121a254869SHong Zhang         }
25131a254869SHong Zhang       }
25144e879edeSHong Zhang       if (j == ncols && ncols < A->cmap->N - n) {
25151a254869SHong Zhang         /* a hole is outside compressed Bcols */
25161a254869SHong Zhang         if (ncols == 0) {
25171a254869SHong Zhang           if (cstart) {
25181a254869SHong Zhang             offdiagIdx[r] = 0;
25191a254869SHong Zhang           } else offdiagIdx[r] = cend;
25201a254869SHong Zhang         } else { /* ncols > 0 */
25211a254869SHong Zhang           offdiagIdx[r] = cmap[ncols - 1] + 1;
25221a254869SHong Zhang           if (offdiagIdx[r] == cstart) offdiagIdx[r] += n;
25231a254869SHong Zhang         }
25241a254869SHong Zhang       }
25251a254869SHong Zhang     }
25261a254869SHong Zhang 
25271a254869SHong Zhang     for (j = 0; j < ncols; j++) {
25289371c9d4SSatish Balay       if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) {
25299371c9d4SSatish Balay         offdiagA[r]   = *ba;
25309371c9d4SSatish Balay         offdiagIdx[r] = cmap[*bj];
25319371c9d4SSatish Balay       }
25329371c9d4SSatish Balay       ba++;
25339371c9d4SSatish Balay       bj++;
25341a254869SHong Zhang     }
25351a254869SHong Zhang   }
25361a254869SHong Zhang 
25379566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &a));
25389566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA));
25391a254869SHong Zhang   for (r = 0; r < m; ++r) {
25401a254869SHong Zhang     if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) {
2541c87e5d42SMatthew Knepley       a[r] = diagA[r];
25421a254869SHong Zhang       if (idx) idx[r] = cstart + diagIdx[r];
25431a254869SHong Zhang     } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) {
25441a254869SHong Zhang       a[r] = diagA[r];
25451a254869SHong Zhang       if (idx) {
25461a254869SHong Zhang         if (cstart + diagIdx[r] <= offdiagIdx[r]) {
2547c87e5d42SMatthew Knepley           idx[r] = cstart + diagIdx[r];
25481a254869SHong Zhang         } else idx[r] = offdiagIdx[r];
25491a254869SHong Zhang       }
2550c87e5d42SMatthew Knepley     } else {
2551c87e5d42SMatthew Knepley       a[r] = offdiagA[r];
25521a254869SHong Zhang       if (idx) idx[r] = offdiagIdx[r];
2553c87e5d42SMatthew Knepley     }
2554c87e5d42SMatthew Knepley   }
25559566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &bav));
25569566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(v, &a));
25579566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA));
25589566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA));
25599566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&diagV));
25609566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&offdiagV));
25619566063dSJacob Faibussowitsch   PetscCall(PetscFree2(diagIdx, offdiagIdx));
25623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2563c87e5d42SMatthew Knepley }
2564c87e5d42SMatthew Knepley 
2565d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat)
2566d71ae5a4SJacob Faibussowitsch {
2567f6d58c54SBarry Smith   Mat *dummy;
25685494a064SHong Zhang 
25695494a064SHong Zhang   PetscFunctionBegin;
25709566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy));
2571f6d58c54SBarry Smith   *newmat = *dummy;
25729566063dSJacob Faibussowitsch   PetscCall(PetscFree(dummy));
25733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25745494a064SHong Zhang }
25755494a064SHong Zhang 
2576ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values)
2577d71ae5a4SJacob Faibussowitsch {
2578bbead8a2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2579bbead8a2SBarry Smith 
2580bbead8a2SBarry Smith   PetscFunctionBegin;
25819566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
25827b6c816cSBarry Smith   A->factorerrortype = a->A->factorerrortype;
25833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2584bbead8a2SBarry Smith }
2585bbead8a2SBarry Smith 
2586d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx)
2587d71ae5a4SJacob Faibussowitsch {
258873a71a0fSBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data;
258973a71a0fSBarry Smith 
259073a71a0fSBarry Smith   PetscFunctionBegin;
259108401ef6SPierre Jolivet   PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed");
25929566063dSJacob Faibussowitsch   PetscCall(MatSetRandom(aij->A, rctx));
2593679944adSJunchao Zhang   if (x->assembled) {
25949566063dSJacob Faibussowitsch     PetscCall(MatSetRandom(aij->B, rctx));
2595679944adSJunchao Zhang   } else {
25969566063dSJacob Faibussowitsch     PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx));
2597679944adSJunchao Zhang   }
25989566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY));
25999566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY));
26003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
260173a71a0fSBarry Smith }
2602bbead8a2SBarry Smith 
2603ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc)
2604d71ae5a4SJacob Faibussowitsch {
2605b1b1104fSBarry Smith   PetscFunctionBegin;
2606b1b1104fSBarry Smith   if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable;
2607b1b1104fSBarry Smith   else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ;
26083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2609b1b1104fSBarry Smith }
2610b1b1104fSBarry Smith 
2611b1b1104fSBarry Smith /*@
2612f2afee66SBarry Smith   MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank
2613f2afee66SBarry Smith 
26142ef1f0ffSBarry Smith   Not Collective
2615f2afee66SBarry Smith 
2616f2afee66SBarry Smith   Input Parameter:
2617f2afee66SBarry Smith . A - the matrix
2618f2afee66SBarry Smith 
2619f2afee66SBarry Smith   Output Parameter:
2620f2afee66SBarry Smith . nz - the number of nonzeros
2621f2afee66SBarry Smith 
2622f2afee66SBarry Smith   Level: advanced
2623f2afee66SBarry Smith 
2624fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2625f2afee66SBarry Smith @*/
2626d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz)
2627d71ae5a4SJacob Faibussowitsch {
2628f2afee66SBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data;
2629f2afee66SBarry Smith   Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data;
2630dfebb78cSStefano Zampini   PetscBool   isaij;
2631f2afee66SBarry Smith 
2632f2afee66SBarry Smith   PetscFunctionBegin;
2633dfebb78cSStefano Zampini   PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij));
2634dfebb78cSStefano Zampini   PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name);
2635f2afee66SBarry Smith   *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n];
26363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2637f2afee66SBarry Smith }
2638f2afee66SBarry Smith 
2639f2afee66SBarry Smith /*@
2640b1b1104fSBarry Smith   MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap
2641b1b1104fSBarry Smith 
2642c3339decSBarry Smith   Collective
2643b1b1104fSBarry Smith 
2644b1b1104fSBarry Smith   Input Parameters:
2645b1b1104fSBarry Smith + A  - the matrix
264611a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm)
2647b1b1104fSBarry Smith 
264896a0c994SBarry Smith   Level: advanced
264996a0c994SBarry Smith 
2650fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`
2651b1b1104fSBarry Smith @*/
2652d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc)
2653d71ae5a4SJacob Faibussowitsch {
2654b1b1104fSBarry Smith   PetscFunctionBegin;
2655cac4c232SBarry Smith   PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc));
26563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2657b1b1104fSBarry Smith }
2658b1b1104fSBarry Smith 
2659ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject)
2660d71ae5a4SJacob Faibussowitsch {
2661b1b1104fSBarry Smith   PetscBool sc = PETSC_FALSE, flg;
2662b1b1104fSBarry Smith 
2663b1b1104fSBarry Smith   PetscFunctionBegin;
2664d0609cedSBarry Smith   PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options");
2665b1b1104fSBarry Smith   if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE;
26669566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg));
26671baa6e33SBarry Smith   if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc));
2668d0609cedSBarry Smith   PetscOptionsHeadEnd();
26693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2670b1b1104fSBarry Smith }
2671b1b1104fSBarry Smith 
2672ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a)
2673d71ae5a4SJacob Faibussowitsch {
26747d68702bSBarry Smith   Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data;
2675c5e4d11fSDmitry Karpeev   Mat_SeqAIJ *aij  = (Mat_SeqAIJ *)maij->A->data;
26767d68702bSBarry Smith 
26777d68702bSBarry Smith   PetscFunctionBegin;
2678c5e4d11fSDmitry Karpeev   if (!Y->preallocated) {
26799566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL));
26805519a089SJose E. Roman   } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */
2681b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26829566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL));
2683b83222d8SBarry Smith     aij->nonew = nonew;
26847d68702bSBarry Smith   }
26859566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
26863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
26877d68702bSBarry Smith }
26887d68702bSBarry Smith 
2689ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag)
2690d71ae5a4SJacob Faibussowitsch {
2691a8ee9fb5SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2692a8ee9fb5SBarry Smith 
2693a8ee9fb5SBarry Smith   PetscFunctionBegin;
26949566063dSJacob Faibussowitsch   PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag));
26953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2696a8ee9fb5SBarry Smith }
26973b49f96aSBarry Smith 
269858c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep)
2699dec0b466SHong Zhang {
2700dec0b466SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
2701dec0b466SHong Zhang 
2702dec0b466SHong Zhang   PetscFunctionBegin;
270358c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
270458c11ad4SPierre Jolivet   PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
27053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2706dec0b466SHong Zhang }
2707dec0b466SHong Zhang 
2708cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ,
2709cda55fadSBarry Smith                                        MatGetRow_MPIAIJ,
2710cda55fadSBarry Smith                                        MatRestoreRow_MPIAIJ,
2711cda55fadSBarry Smith                                        MatMult_MPIAIJ,
271297304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIAIJ,
27137c922b88SBarry Smith                                        MatMultTranspose_MPIAIJ,
27147c922b88SBarry Smith                                        MatMultTransposeAdd_MPIAIJ,
2715f4259b30SLisandro Dalcin                                        NULL,
2716f4259b30SLisandro Dalcin                                        NULL,
2717f4259b30SLisandro Dalcin                                        NULL,
2718f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2719f4259b30SLisandro Dalcin                                        NULL,
2720f4259b30SLisandro Dalcin                                        NULL,
272141f059aeSBarry Smith                                        MatSOR_MPIAIJ,
2722b7c46309SBarry Smith                                        MatTranspose_MPIAIJ,
272397304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIAIJ,
2724cda55fadSBarry Smith                                        MatEqual_MPIAIJ,
2725cda55fadSBarry Smith                                        MatGetDiagonal_MPIAIJ,
2726cda55fadSBarry Smith                                        MatDiagonalScale_MPIAIJ,
2727cda55fadSBarry Smith                                        MatNorm_MPIAIJ,
272897304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIAIJ,
2729cda55fadSBarry Smith                                        MatAssemblyEnd_MPIAIJ,
2730cda55fadSBarry Smith                                        MatSetOption_MPIAIJ,
2731cda55fadSBarry Smith                                        MatZeroEntries_MPIAIJ,
2732d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIAIJ,
2733f4259b30SLisandro Dalcin                                        NULL,
2734f4259b30SLisandro Dalcin                                        NULL,
2735f4259b30SLisandro Dalcin                                        NULL,
2736f4259b30SLisandro Dalcin                                        NULL,
273726cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2738f4259b30SLisandro Dalcin                                        NULL,
2739f4259b30SLisandro Dalcin                                        NULL,
2740a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIAIJ,
2741f4259b30SLisandro Dalcin                                        NULL,
2742d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIAIJ,
2743f4259b30SLisandro Dalcin                                        NULL,
2744f4259b30SLisandro Dalcin                                        NULL,
2745f4259b30SLisandro Dalcin                                        NULL,
2746f4259b30SLisandro Dalcin                                        NULL,
2747d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIAIJ,
27487dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIAIJ,
2749cda55fadSBarry Smith                                        MatIncreaseOverlap_MPIAIJ,
2750cda55fadSBarry Smith                                        MatGetValues_MPIAIJ,
2751cb5b572fSBarry Smith                                        MatCopy_MPIAIJ,
2752d519adbfSMatthew Knepley                                        /*44*/ MatGetRowMax_MPIAIJ,
2753cda55fadSBarry Smith                                        MatScale_MPIAIJ,
27547d68702bSBarry Smith                                        MatShift_MPIAIJ,
275599e65526SBarry Smith                                        MatDiagonalSet_MPIAIJ,
2756564f14d6SBarry Smith                                        MatZeroRowsColumns_MPIAIJ,
275773a71a0fSBarry Smith                                        /*49*/ MatSetRandom_MPIAIJ,
27588a9c020eSBarry Smith                                        MatGetRowIJ_MPIAIJ,
27598a9c020eSBarry Smith                                        MatRestoreRowIJ_MPIAIJ,
2760f4259b30SLisandro Dalcin                                        NULL,
2761f4259b30SLisandro Dalcin                                        NULL,
276293dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2763f4259b30SLisandro Dalcin                                        NULL,
2764cda55fadSBarry Smith                                        MatSetUnfactored_MPIAIJ,
276572e6a0cfSJed Brown                                        MatPermute_MPIAIJ,
2766f4259b30SLisandro Dalcin                                        NULL,
27677dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIAIJ,
2768e03a110bSBarry Smith                                        MatDestroy_MPIAIJ,
2769e03a110bSBarry Smith                                        MatView_MPIAIJ,
2770f4259b30SLisandro Dalcin                                        NULL,
2771f4259b30SLisandro Dalcin                                        NULL,
27728bb0f5c6SPierre Jolivet                                        /*64*/ MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ,
2773f4259b30SLisandro Dalcin                                        NULL,
2774f4259b30SLisandro Dalcin                                        NULL,
2775f4259b30SLisandro Dalcin                                        NULL,
27768bb0f5c6SPierre Jolivet                                        MatGetRowMaxAbs_MPIAIJ,
27778bb0f5c6SPierre Jolivet                                        /*69*/ MatGetRowMinAbs_MPIAIJ,
2778f4259b30SLisandro Dalcin                                        NULL,
2779f4259b30SLisandro Dalcin                                        NULL,
27808bb0f5c6SPierre Jolivet                                        MatFDColoringApply_AIJ,
2781b1b1104fSBarry Smith                                        MatSetFromOptions_MPIAIJ,
2782f1f41ecbSJed Brown                                        MatFindZeroDiagonals_MPIAIJ,
27838bb0f5c6SPierre Jolivet                                        /*75*/ NULL,
27848bb0f5c6SPierre Jolivet                                        NULL,
27858bb0f5c6SPierre Jolivet                                        NULL,
27868bb0f5c6SPierre Jolivet                                        MatLoad_MPIAIJ,
27878bb0f5c6SPierre Jolivet                                        NULL,
2788f4259b30SLisandro Dalcin                                        /*80*/ NULL,
2789f4259b30SLisandro Dalcin                                        NULL,
2790f4259b30SLisandro Dalcin                                        NULL,
27918bb0f5c6SPierre Jolivet                                        /*83*/ NULL,
2792f4259b30SLisandro Dalcin                                        NULL,
279326be0446SHong Zhang                                        MatMatMultNumeric_MPIAIJ_MPIAIJ,
27948bb0f5c6SPierre Jolivet                                        MatPtAPNumeric_MPIAIJ_MPIAIJ,
2795f4259b30SLisandro Dalcin                                        NULL,
2796f4259b30SLisandro Dalcin                                        NULL,
27978bb0f5c6SPierre Jolivet                                        /*89*/ MatBindToCPU_MPIAIJ,
27988bb0f5c6SPierre Jolivet                                        MatProductSetFromOptions_MPIAIJ,
2799f4259b30SLisandro Dalcin                                        NULL,
2800f4259b30SLisandro Dalcin                                        NULL,
28012fd7e33dSBarry Smith                                        MatConjugate_MPIAIJ,
28028bb0f5c6SPierre Jolivet                                        /*94*/ NULL,
28038bb0f5c6SPierre Jolivet                                        MatSetValuesRow_MPIAIJ,
280499cafbc1SBarry Smith                                        MatRealPart_MPIAIJ,
280569db28dcSHong Zhang                                        MatImaginaryPart_MPIAIJ,
2806f4259b30SLisandro Dalcin                                        NULL,
28078bb0f5c6SPierre Jolivet                                        /*99*/ NULL,
2808f4259b30SLisandro Dalcin                                        NULL,
2809f4259b30SLisandro Dalcin                                        NULL,
28105494a064SHong Zhang                                        MatGetRowMin_MPIAIJ,
2811f4259b30SLisandro Dalcin                                        NULL,
2812421480d9SBarry Smith                                        /*104*/ MatGetSeqNonzeroStructure_MPIAIJ,
2813f4259b30SLisandro Dalcin                                        NULL,
2814c5e4d11fSDmitry Karpeev                                        MatGetGhosts_MPIAIJ,
2815f4259b30SLisandro Dalcin                                        NULL,
2816421480d9SBarry Smith                                        NULL,
2817421480d9SBarry Smith                                        /*109*/ MatMultDiagonalBlock_MPIAIJ,
2818f4259b30SLisandro Dalcin                                        NULL,
2819f4259b30SLisandro Dalcin                                        NULL,
2820f4259b30SLisandro Dalcin                                        NULL,
2821421480d9SBarry Smith                                        MatGetMultiProcBlock_MPIAIJ,
2822421480d9SBarry Smith                                        /*114*/ MatFindNonzeroRows_MPIAIJ,
2823a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIAIJ,
2824bbead8a2SBarry Smith                                        MatInvertBlockDiagonal_MPIAIJ,
2825a8ee9fb5SBarry Smith                                        MatInvertVariableBlockDiagonal_MPIAIJ,
2826421480d9SBarry Smith                                        MatCreateSubMatricesMPI_MPIAIJ,
2827421480d9SBarry Smith                                        /*119*/ NULL,
2828f4259b30SLisandro Dalcin                                        NULL,
2829187b3c17SHong Zhang                                        MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ,
2830f4259b30SLisandro Dalcin                                        NULL,
2831f4259b30SLisandro Dalcin                                        NULL,
2832421480d9SBarry Smith                                        /*124*/ NULL,
2833f4259b30SLisandro Dalcin                                        NULL,
28348bb0f5c6SPierre Jolivet                                        MatSetBlockSizes_MPIAIJ,
2835f4259b30SLisandro Dalcin                                        NULL,
2836421480d9SBarry Smith                                        MatFDColoringSetUp_MPIXAIJ,
2837421480d9SBarry Smith                                        /*129*/ MatFindOffBlockDiagonalEntries_MPIAIJ,
28384222ddf1SHong Zhang                                        MatCreateMPIMatConcatenateSeqMat_MPIAIJ,
2839f4259b30SLisandro Dalcin                                        NULL,
284072833a62Smarkadams4                                        NULL,
2841421480d9SBarry Smith                                        NULL,
2842421480d9SBarry Smith                                        /*134*/ MatCreateGraph_Simple_AIJ,
28432d776b49SBarry Smith                                        NULL,
2844eede4a3fSMark Adams                                        MatEliminateZeros_MPIAIJ,
28454cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIAIJ,
284642ce410bSJunchao Zhang                                        NULL,
2847421480d9SBarry Smith                                        /*139*/ NULL,
284842ce410bSJunchao Zhang                                        NULL,
284903db1824SAlex Lindsay                                        MatCopyHashToXAIJ_MPI_Hash,
2850c2be7ffeSStefano Zampini                                        MatGetCurrentMemType_MPIAIJ,
2851c2be7ffeSStefano Zampini                                        NULL};
285236ce4990SBarry Smith 
2853ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat)
2854d71ae5a4SJacob Faibussowitsch {
28552e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28562e8a6d31SBarry Smith 
28572e8a6d31SBarry Smith   PetscFunctionBegin;
28589566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
28599566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
28603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28612e8a6d31SBarry Smith }
28622e8a6d31SBarry Smith 
2863ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat)
2864d71ae5a4SJacob Faibussowitsch {
28652e8a6d31SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data;
28662e8a6d31SBarry Smith 
28672e8a6d31SBarry Smith   PetscFunctionBegin;
28689566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
28699566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
28703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
28712e8a6d31SBarry Smith }
28728a729477SBarry Smith 
2873d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
2874d71ae5a4SJacob Faibussowitsch {
2875ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
28765d2a9ed1SStefano Zampini   PetscMPIInt size;
2877a23d5eceSKris Buschelman 
2878a23d5eceSKris Buschelman   PetscFunctionBegin;
2879ad79cf63SBarry Smith   if (B->hash_active) {
2880aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2881ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2882ad79cf63SBarry Smith   }
28839566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
28849566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
2885899cda47SBarry Smith 
2886cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2887eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2888cb7b82ddSBarry Smith #else
28899566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2890cb7b82ddSBarry Smith #endif
28919566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
28929566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
28939566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2894cb7b82ddSBarry Smith 
28959566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2896c508b908SBarry Smith 
2897c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
28989566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
28999566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
29009566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
29019566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->B, B, B));
29029566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQAIJ));
2903c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2904cb7b82ddSBarry Smith 
2905c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2906ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
29079566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
29089566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
29099566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(b->A, B, B));
29109566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQAIJ));
2911c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2912899cda47SBarry Smith 
29139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz));
29149566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz));
2915526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2916cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
291715001458SStefano Zampini   B->assembled     = PETSC_FALSE;
29183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2919a23d5eceSKris Buschelman }
2920a23d5eceSKris Buschelman 
2921ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B)
2922d71ae5a4SJacob Faibussowitsch {
2923ad79cf63SBarry Smith   Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data;
29244c51d546SAlexander   PetscBool   ondiagreset, offdiagreset, memoryreset;
2925846b4da1SFande Kong 
2926846b4da1SFande Kong   PetscFunctionBegin;
2927846b4da1SFande Kong   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29284c51d546SAlexander   PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()");
29294c51d546SAlexander   if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS);
29304c51d546SAlexander 
29314c51d546SAlexander   PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset));
29324c51d546SAlexander   PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset));
29334c51d546SAlexander   memoryreset = (PetscBool)(ondiagreset || offdiagreset);
29345440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPI_C_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B)));
29354c51d546SAlexander   if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS);
29364c51d546SAlexander 
29379566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
29389566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
29394c51d546SAlexander   PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled");
29404c51d546SAlexander   PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE));
29419566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2942846b4da1SFande Kong 
2943846b4da1SFande Kong   B->preallocated  = PETSC_TRUE;
2944846b4da1SFande Kong   B->was_assembled = PETSC_FALSE;
2945846b4da1SFande Kong   B->assembled     = PETSC_FALSE;
2946b3a35320SAlex Lindsay   /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */
2947b3a35320SAlex Lindsay   PetscCall(PetscObjectStateIncrease((PetscObject)B));
29483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2949846b4da1SFande Kong }
2950846b4da1SFande Kong 
2951d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
2952d71ae5a4SJacob Faibussowitsch {
2953d6dfbf8fSBarry Smith   Mat         mat;
2954416022c9SBarry Smith   Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data;
2955d6dfbf8fSBarry Smith 
29563a40ed3dSBarry Smith   PetscFunctionBegin;
2957f4259b30SLisandro Dalcin   *newmat = NULL;
29589566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
29599566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
29609566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(mat, matin, matin));
29619566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
2962273d9f13SBarry Smith   a = (Mat_MPIAIJ *)mat->data;
2963e1b6402fSHong Zhang 
2964d5f3da31SBarry Smith   mat->factortype = matin->factortype;
2965501880eeSStefano Zampini   mat->assembled  = matin->assembled;
2966e7641de0SSatish Balay   mat->insertmode = NOT_SET_VALUES;
2967d6dfbf8fSBarry Smith 
296817699dbbSLois Curfman McInnes   a->size         = oldmat->size;
296917699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
2970e7641de0SSatish Balay   a->donotstash   = oldmat->donotstash;
2971e7641de0SSatish Balay   a->roworiented  = oldmat->roworiented;
2972501880eeSStefano Zampini   a->rowindices   = NULL;
2973501880eeSStefano Zampini   a->rowvalues    = NULL;
2974bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
2975d6dfbf8fSBarry Smith 
29769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
29779566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
2978420957c1SBarry Smith   if (matin->hash_active) {
2979420957c1SBarry Smith     PetscCall(MatSetUp(mat));
2980420957c1SBarry Smith   } else {
2981420957c1SBarry Smith     mat->preallocated = matin->preallocated;
29822ee70a88SLois Curfman McInnes     if (oldmat->colmap) {
2983aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2984eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
2985b1fc9764SSatish Balay #else
29869566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap));
29879566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N));
2988b1fc9764SSatish Balay #endif
2989501880eeSStefano Zampini     } else a->colmap = NULL;
29903f41c07dSBarry Smith     if (oldmat->garray) {
2991b1d57f15SBarry Smith       PetscInt len;
2992d0f46423SBarry Smith       len = oldmat->B->cmap->n;
299384648c2dSPierre Jolivet       PetscCall(PetscMalloc1(len, &a->garray));
29949566063dSJacob Faibussowitsch       if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
2995501880eeSStefano Zampini     } else a->garray = NULL;
2996d6dfbf8fSBarry Smith 
29970de76c62SStefano Zampini     /* It may happen MatDuplicate is called with a non-assembled matrix
29980de76c62SStefano Zampini       In fact, MatDuplicate only requires the matrix to be preallocated
29990de76c62SStefano Zampini       This may happen inside a DMCreateMatrix_Shell */
3000aa624791SPierre Jolivet     if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
3001cff58d65SJunchao Zhang     if (oldmat->Mvctx) {
3002cff58d65SJunchao Zhang       a->Mvctx = oldmat->Mvctx;
3003cff58d65SJunchao Zhang       PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx));
3004cff58d65SJunchao Zhang     }
30059566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
30069566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3007420957c1SBarry Smith   }
30089566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
30098a729477SBarry Smith   *newmat = mat;
30103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30118a729477SBarry Smith }
3012416022c9SBarry Smith 
3013d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer)
3014d71ae5a4SJacob Faibussowitsch {
301552f91c60SVaclav Hapla   PetscBool isbinary, ishdf5;
301652f91c60SVaclav Hapla 
301752f91c60SVaclav Hapla   PetscFunctionBegin;
301852f91c60SVaclav Hapla   PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1);
301952f91c60SVaclav Hapla   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
3020c27b3999SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
30219566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30229566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
30239566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5));
302452f91c60SVaclav Hapla   if (isbinary) {
30259566063dSJacob Faibussowitsch     PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer));
302652f91c60SVaclav Hapla   } else if (ishdf5) {
302752f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
30289566063dSJacob Faibussowitsch     PetscCall(MatLoad_AIJ_HDF5(newMat, viewer));
302952f91c60SVaclav Hapla #else
303052f91c60SVaclav Hapla     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5");
303152f91c60SVaclav Hapla #endif
303252f91c60SVaclav Hapla   } else {
303398921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name);
303452f91c60SVaclav Hapla   }
30353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
303652f91c60SVaclav Hapla }
303752f91c60SVaclav Hapla 
3038d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer)
3039d71ae5a4SJacob Faibussowitsch {
30403ea6fe3dSLisandro Dalcin   PetscInt     header[4], M, N, m, nz, rows, cols, sum, i;
30413ea6fe3dSLisandro Dalcin   PetscInt    *rowidxs, *colidxs;
30423ea6fe3dSLisandro Dalcin   PetscScalar *matvals;
30438fb81238SShri Abhyankar 
30448fb81238SShri Abhyankar   PetscFunctionBegin;
30459566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
30468fb81238SShri Abhyankar 
30473ea6fe3dSLisandro Dalcin   /* read in matrix header */
30489566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
304908401ef6SPierre Jolivet   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
30509371c9d4SSatish Balay   M  = header[1];
30519371c9d4SSatish Balay   N  = header[2];
30529371c9d4SSatish Balay   nz = header[3];
305308401ef6SPierre Jolivet   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
305408401ef6SPierre Jolivet   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
305508401ef6SPierre Jolivet   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ");
305608ea439dSMark F. Adams 
30573ea6fe3dSLisandro Dalcin   /* set block sizes from the viewer's .info file */
30589566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
30593ea6fe3dSLisandro Dalcin   /* set global sizes if not set already */
30603ea6fe3dSLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
30613ea6fe3dSLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
30629566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
30639566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
30648fb81238SShri Abhyankar 
30653ea6fe3dSLisandro Dalcin   /* check if the matrix sizes are correct */
30669566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
3067aed4548fSBarry Smith   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
30688fb81238SShri Abhyankar 
30693ea6fe3dSLisandro Dalcin   /* read in row lengths and build row indices */
30709566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
30719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
30729566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
30739371c9d4SSatish Balay   rowidxs[0] = 0;
30749371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
30751690c2aeSBarry Smith   if (nz != PETSC_INT_MAX) {
3076462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
307708401ef6SPierre Jolivet     PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
307838b83642SBarry Smith   }
307938b83642SBarry Smith 
30803ea6fe3dSLisandro Dalcin   /* read in column indices and matrix values */
30819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
30829566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
30839566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
30843ea6fe3dSLisandro Dalcin   /* store matrix indices and values */
30859566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals));
30869566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
30879566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
30883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30898fb81238SShri Abhyankar }
30908fb81238SShri Abhyankar 
30913782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */
3092ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq)
3093d71ae5a4SJacob Faibussowitsch {
30944aa3045dSJed Brown   IS          iscol_local;
3095c5e4d11fSDmitry Karpeev   PetscBool   isstride;
30969725ddffSPierre Jolivet   PetscMPIInt gisstride = 0;
30973782ecc7SHong Zhang 
30983782ecc7SHong Zhang   PetscFunctionBegin;
30993782ecc7SHong Zhang   /* check if we are grabbing all columns*/
31009566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride));
31013782ecc7SHong Zhang 
3102c5e4d11fSDmitry Karpeev   if (isstride) {
3103c5e4d11fSDmitry Karpeev     PetscInt start, len, mstart, mlen;
31049566063dSJacob Faibussowitsch     PetscCall(ISStrideGetInfo(iscol, &start, NULL));
31059566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &len));
31069566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen));
31079725ddffSPierre Jolivet     if (mstart == start && mlen - mstart == len) gisstride = 1;
3108c5e4d11fSDmitry Karpeev   }
31093782ecc7SHong Zhang 
31109725ddffSPierre Jolivet   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat)));
3111c5e4d11fSDmitry Karpeev   if (gisstride) {
3112c5e4d11fSDmitry Karpeev     PetscInt N;
31139566063dSJacob Faibussowitsch     PetscCall(MatGetSize(mat, NULL, &N));
31149566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local));
31159566063dSJacob Faibussowitsch     PetscCall(ISSetIdentity(iscol_local));
31169566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n"));
3117c5e4d11fSDmitry Karpeev   } else {
3118c5bfad50SMark F. Adams     PetscInt cbs;
31199566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
31209566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
31219566063dSJacob Faibussowitsch     PetscCall(ISSetBlockSize(iscol_local, cbs));
3122b79d0421SJed Brown   }
31233782ecc7SHong Zhang 
31243782ecc7SHong Zhang   *isseq = iscol_local;
31253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3126c5e4d11fSDmitry Karpeev }
31278d2139bdSHong Zhang 
3128ddfdf956SHong Zhang /*
31299c988bcaSHong Zhang  Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local
31309c988bcaSHong Zhang  (see MatCreateSubMatrix_MPIAIJ_nonscalable)
3131ddfdf956SHong Zhang 
3132ddfdf956SHong Zhang  Input Parameters:
313327430b45SBarry Smith +   mat - matrix
313427430b45SBarry Smith .   isrow - parallel row index set; its local indices are a subset of local columns of `mat`,
31359c988bcaSHong Zhang            i.e., mat->rstart <= isrow[i] < mat->rend
313627430b45SBarry Smith -   iscol - parallel column index set; its local indices are a subset of local columns of `mat`,
3137ddfdf956SHong Zhang            i.e., mat->cstart <= iscol[i] < mat->cend
313827430b45SBarry Smith 
313927430b45SBarry Smith  Output Parameters:
314027430b45SBarry Smith +   isrow_d - sequential row index set for retrieving mat->A
314127430b45SBarry Smith .   iscol_d - sequential  column index set for retrieving mat->A
314227430b45SBarry Smith .   iscol_o - sequential column index set for retrieving mat->B
314327430b45SBarry Smith -   garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol`
3144ddfdf956SHong Zhang  */
3145835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[])
3146d71ae5a4SJacob Faibussowitsch {
3147040216a4SHong Zhang   Vec             x, cmap;
3148040216a4SHong Zhang   const PetscInt *is_idx;
3149040216a4SHong Zhang   PetscScalar    *xarray, *cmaparray;
31509c988bcaSHong Zhang   PetscInt        ncols, isstart, *idx, m, rstart, *cmap1, count;
3151040216a4SHong Zhang   Mat_MPIAIJ     *a    = (Mat_MPIAIJ *)mat->data;
3152040216a4SHong Zhang   Mat             B    = a->B;
3153040216a4SHong Zhang   Vec             lvec = a->lvec, lcmap;
3154a31a438cSHong Zhang   PetscInt        i, cstart, cend, Bn = B->cmap->N;
31558b3fa1f7SHong Zhang   MPI_Comm        comm;
31563a8d973cSHong Zhang   VecScatter      Mvctx = a->Mvctx;
31573782ecc7SHong Zhang 
31583782ecc7SHong Zhang   PetscFunctionBegin;
31599566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
31609566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &ncols));
31618b3fa1f7SHong Zhang 
3162ddfdf956SHong Zhang   /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */
31639566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mat, &x, NULL));
31649566063dSJacob Faibussowitsch   PetscCall(VecSet(x, -1.0));
31659566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(x, &cmap));
31669566063dSJacob Faibussowitsch   PetscCall(VecSet(cmap, -1.0));
31670a351717SHong Zhang 
31689c988bcaSHong Zhang   /* Get start indices */
31699566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm));
3170ddfdf956SHong Zhang   isstart -= ncols;
31719566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend));
3172040216a4SHong Zhang 
31739566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscol, &is_idx));
31749566063dSJacob Faibussowitsch   PetscCall(VecGetArray(x, &xarray));
31759566063dSJacob Faibussowitsch   PetscCall(VecGetArray(cmap, &cmaparray));
31769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ncols, &idx));
3177ddfdf956SHong Zhang   for (i = 0; i < ncols; i++) {
31788b3fa1f7SHong Zhang     xarray[is_idx[i] - cstart]    = (PetscScalar)is_idx[i];
3179ddfdf956SHong Zhang     cmaparray[is_idx[i] - cstart] = i + isstart;        /* global index of iscol[i] */
31809c988bcaSHong Zhang     idx[i]                        = is_idx[i] - cstart; /* local index of iscol[i]  */
31818b3fa1f7SHong Zhang   }
31829566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(x, &xarray));
31839566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(cmap, &cmaparray));
31849566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscol, &is_idx));
31858b3fa1f7SHong Zhang 
31869c988bcaSHong Zhang   /* Get iscol_d */
31879566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d));
31889566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(iscol, &i));
31899566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*iscol_d, i));
3190feb78a15SHong Zhang 
31919c988bcaSHong Zhang   /* Get isrow_d */
31929566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(isrow, &m));
3193feb78a15SHong Zhang   rstart = mat->rmap->rstart;
31949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idx));
31959566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(isrow, &is_idx));
31969c988bcaSHong Zhang   for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart;
31979566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(isrow, &is_idx));
3198feb78a15SHong Zhang 
31999566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d));
32009566063dSJacob Faibussowitsch   PetscCall(ISGetBlockSize(isrow, &i));
32019566063dSJacob Faibussowitsch   PetscCall(ISSetBlockSize(*isrow_d, i));
3202feb78a15SHong Zhang 
32039c988bcaSHong Zhang   /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */
32049566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
32059566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD));
3206ddfdf956SHong Zhang 
32079566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(lvec, &lcmap));
320807250d77SHong Zhang 
32099566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
32109566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD));
321164efcef9SHong Zhang 
32129c988bcaSHong Zhang   /* (3) create sequential iscol_o (a subset of iscol) and isgarray */
3213ddfdf956SHong Zhang   /* off-process column indices */
32149c988bcaSHong Zhang   count = 0;
32159566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &idx));
32169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bn, &cmap1));
3217feb78a15SHong Zhang 
32189566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lvec, &xarray));
32199566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lcmap, &cmaparray));
32208b3fa1f7SHong Zhang   for (i = 0; i < Bn; i++) {
3221f73421bfSHong Zhang     if (PetscRealPart(xarray[i]) > -1.0) {
32229c988bcaSHong Zhang       idx[count]   = i;                                     /* local column index in off-diagonal part B */
32231c645242SHong Zhang       cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */
32241c645242SHong Zhang       count++;
32258b3fa1f7SHong Zhang     }
32268b3fa1f7SHong Zhang   }
32279566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lvec, &xarray));
32289566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lcmap, &cmaparray));
322907250d77SHong Zhang 
32309566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o));
3231b6d9b4e0SHong Zhang   /* cannot ensure iscol_o has same blocksize as iscol! */
3232b6d9b4e0SHong Zhang 
32339566063dSJacob Faibussowitsch   PetscCall(PetscFree(idx));
32349c988bcaSHong Zhang   *garray = cmap1;
32359c988bcaSHong Zhang 
32369566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&x));
32379566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&cmap));
32389566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lcmap));
32393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3240040216a4SHong Zhang }
3241040216a4SHong Zhang 
3242b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */
3243d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat)
3244d71ae5a4SJacob Faibussowitsch {
3245b20e2604SHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub;
32461fd43edeSHong Zhang   Mat         M = NULL;
32473b00a383SHong Zhang   MPI_Comm    comm;
3248b20e2604SHong Zhang   IS          iscol_d, isrow_d, iscol_o;
32493b00a383SHong Zhang   Mat         Asub = NULL, Bsub = NULL;
3250c0c276a7Ssdargavi   PetscInt    n, count, M_size, N_size;
32513b00a383SHong Zhang 
32523b00a383SHong Zhang   PetscFunctionBegin;
32539566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
32543b00a383SHong Zhang 
32553b00a383SHong Zhang   if (call == MAT_REUSE_MATRIX) {
3256b20e2604SHong Zhang     /* Retrieve isrow_d, iscol_d and iscol_o from submat */
32579566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d));
325828b400f6SJacob Faibussowitsch     PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse");
32593b00a383SHong Zhang 
32609566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d));
326128b400f6SJacob Faibussowitsch     PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse");
32623b00a383SHong Zhang 
32639566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o));
326428b400f6SJacob Faibussowitsch     PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse");
32653b00a383SHong Zhang 
3266b20e2604SHong Zhang     /* Update diagonal and off-diagonal portions of submat */
3267b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)(*submat)->data;
32689566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A));
32699566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &n));
327048a46eb9SPierre Jolivet     if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B));
32719566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY));
32729566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY));
32733b00a383SHong Zhang 
32743b00a383SHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
3275c0c276a7Ssdargavi     PetscInt *garray, *garray_compact;
3276b20e2604SHong Zhang     PetscInt  BsubN;
32773b00a383SHong Zhang 
3278b20e2604SHong Zhang     /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */
32799566063dSJacob Faibussowitsch     PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray));
32803b00a383SHong Zhang 
3281b20e2604SHong Zhang     /* Create local submatrices Asub and Bsub */
32829566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub));
32839566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub));
32843b00a383SHong Zhang 
3285c0c276a7Ssdargavi     // Compact garray so its not of size Bn
3286c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol_o, &count));
3287c0c276a7Ssdargavi     PetscCall(PetscMalloc1(count, &garray_compact));
3288c0c276a7Ssdargavi     PetscCall(PetscArraycpy(garray_compact, garray, count));
3289c0c276a7Ssdargavi 
32909c988bcaSHong Zhang     /* Create submatrix M */
3291c0c276a7Ssdargavi     PetscCall(ISGetSize(isrow, &M_size));
3292c0c276a7Ssdargavi     PetscCall(ISGetSize(iscol, &N_size));
3293c0c276a7Ssdargavi     PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M));
32943b00a383SHong Zhang 
3295b20e2604SHong Zhang     /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */
3296b20e2604SHong Zhang     asub = (Mat_MPIAIJ *)M->data;
32977cfce09cSHong Zhang 
32989566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_o, &BsubN));
3299b20e2604SHong Zhang     n = asub->B->cmap->N;
3300b20e2604SHong Zhang     if (BsubN > n) {
3301c4762a1bSJed Brown       /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */
33027cfce09cSHong Zhang       const PetscInt *idx;
33039c988bcaSHong Zhang       PetscInt        i, j, *idx_new, *subgarray = asub->garray;
33049566063dSJacob Faibussowitsch       PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN));
33057cfce09cSHong Zhang 
33069566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(n, &idx_new));
33077cfce09cSHong Zhang       j = 0;
33089566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_o, &idx));
3309b20e2604SHong Zhang       for (i = 0; i < n; i++) {
33107cfce09cSHong Zhang         if (j >= BsubN) break;
33119c988bcaSHong Zhang         while (subgarray[i] > garray[j]) j++;
33127cfce09cSHong Zhang 
3313966bd95aSPierre Jolivet         PetscCheck(subgarray[i] == garray[j], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]);
33147cfce09cSHong Zhang         idx_new[i] = idx[j++];
33157cfce09cSHong Zhang       }
33169566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_o, &idx));
33177cfce09cSHong Zhang 
33189566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_o));
33199566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o));
33207cfce09cSHong Zhang 
3321966bd95aSPierre Jolivet     } else PetscCheck(BsubN >= n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N);
33227cfce09cSHong Zhang 
33239566063dSJacob Faibussowitsch     PetscCall(PetscFree(garray));
3324b20e2604SHong Zhang     *submat = M;
33253b00a383SHong Zhang 
3326e489de8fSHong Zhang     /* Save isrow_d, iscol_d and iscol_o used in processor for next request */
33279566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d));
33289566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrow_d));
33293b00a383SHong Zhang 
33309566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d));
33319566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_d));
33323b00a383SHong Zhang 
33339566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o));
33349566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_o));
33353b00a383SHong Zhang   }
33363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33373b00a383SHong Zhang }
33383b00a383SHong Zhang 
3339d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
3340d71ae5a4SJacob Faibussowitsch {
33411358a193SHong Zhang   IS        iscol_local = NULL, isrow_d;
33423782ecc7SHong Zhang   PetscInt  csize;
334318e627e3SHong Zhang   PetscInt  n, i, j, start, end;
33444a3daf6eSHong Zhang   PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2];
33453782ecc7SHong Zhang   MPI_Comm  comm;
33463782ecc7SHong Zhang 
33473782ecc7SHong Zhang   PetscFunctionBegin;
3348bcae8d28SHong Zhang   /* If isrow has same processor distribution as mat,
3349a31a438cSHong Zhang      call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */
33508f69fa7bSHong Zhang   if (call == MAT_REUSE_MATRIX) {
33519566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d));
3352d5761cdaSHong Zhang     if (isrow_d) {
3353d5761cdaSHong Zhang       sameRowDist  = PETSC_TRUE;
3354d5761cdaSHong Zhang       tsameDist[1] = PETSC_TRUE; /* sameColDist */
3355d5761cdaSHong Zhang     } else {
33569566063dSJacob Faibussowitsch       PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local));
3357d5761cdaSHong Zhang       if (iscol_local) {
3358d5761cdaSHong Zhang         sameRowDist  = PETSC_TRUE;
3359d5761cdaSHong Zhang         tsameDist[1] = PETSC_FALSE; /* !sameColDist */
3360d5761cdaSHong Zhang       }
3361d5761cdaSHong Zhang     }
33628f69fa7bSHong Zhang   } else {
3363e489de8fSHong Zhang     /* Check if isrow has same processor distribution as mat */
336418e627e3SHong Zhang     sameDist[0] = PETSC_FALSE;
33659566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isrow, &n));
33663782ecc7SHong Zhang     if (!n) {
336718e627e3SHong Zhang       sameDist[0] = PETSC_TRUE;
33683782ecc7SHong Zhang     } else {
33699566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(isrow, &i, &j));
33709566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRange(mat, &start, &end));
3371ad540459SPierre Jolivet       if (i >= start && j < end) sameDist[0] = PETSC_TRUE;
33728f69fa7bSHong Zhang     }
33733782ecc7SHong Zhang 
3374e489de8fSHong Zhang     /* Check if iscol has same processor distribution as mat */
337518e627e3SHong Zhang     sameDist[1] = PETSC_FALSE;
33769566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
337718e627e3SHong Zhang     if (!n) {
337818e627e3SHong Zhang       sameDist[1] = PETSC_TRUE;
337918e627e3SHong Zhang     } else {
33809566063dSJacob Faibussowitsch       PetscCall(ISGetMinMax(iscol, &i, &j));
33819566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end));
338218e627e3SHong Zhang       if (i >= start && j < end) sameDist[1] = PETSC_TRUE;
338318e627e3SHong Zhang     }
338418e627e3SHong Zhang 
33859566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
33865440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPI_C_BOOL, MPI_LAND, comm));
338718e627e3SHong Zhang     sameRowDist = tsameDist[0];
338818e627e3SHong Zhang   }
338918e627e3SHong Zhang 
339018e627e3SHong Zhang   if (sameRowDist) {
3391b20e2604SHong Zhang     if (tsameDist[1]) { /* sameRowDist & sameColDist */
33923b00a383SHong Zhang       /* isrow and iscol have same processor distribution as mat */
33939566063dSJacob Faibussowitsch       PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat));
33943ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
3395b20e2604SHong Zhang     } else { /* sameRowDist */
33963b00a383SHong Zhang       /* isrow has same processor distribution as mat */
33971358a193SHong Zhang       if (call == MAT_INITIAL_MATRIX) {
33981358a193SHong Zhang         PetscBool sorted;
33999566063dSJacob Faibussowitsch         PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34009566063dSJacob Faibussowitsch         PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */
34019566063dSJacob Faibussowitsch         PetscCall(ISGetSize(iscol, &i));
340208401ef6SPierre Jolivet         PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i);
34031358a193SHong Zhang 
34049566063dSJacob Faibussowitsch         PetscCall(ISSorted(iscol_local, &sorted));
34051358a193SHong Zhang         if (sorted) {
34061358a193SHong Zhang           /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */
34079566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat));
34083ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
34093782ecc7SHong Zhang         }
34101358a193SHong Zhang       } else { /* call == MAT_REUSE_MATRIX */
341148c0d076SHong Zhang         IS iscol_sub;
34129566063dSJacob Faibussowitsch         PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
341348c0d076SHong Zhang         if (iscol_sub) {
34149566063dSJacob Faibussowitsch           PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat));
34153ba16761SJacob Faibussowitsch           PetscFunctionReturn(PETSC_SUCCESS);
341648c0d076SHong Zhang         }
34171358a193SHong Zhang       }
34181358a193SHong Zhang     }
34191358a193SHong Zhang   }
34203782ecc7SHong Zhang 
3421bcae8d28SHong Zhang   /* General case: iscol -> iscol_local which has global size of iscol */
34223782ecc7SHong Zhang   if (call == MAT_REUSE_MATRIX) {
34239566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
342428b400f6SJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
34253782ecc7SHong Zhang   } else {
342648a46eb9SPierre Jolivet     if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local));
34271358a193SHong Zhang   }
34283782ecc7SHong Zhang 
34299566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
34309566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat));
34318f69fa7bSHong Zhang 
3432b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
34339566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
34349566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
3435b79d0421SJed Brown   }
34363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34374aa3045dSJed Brown }
34384aa3045dSJed Brown 
3439feb78a15SHong Zhang /*@C
344011a5261eSBarry Smith   MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal"
3441feb78a15SHong Zhang   and "off-diagonal" part of the matrix in CSR format.
3442feb78a15SHong Zhang 
3443d083f849SBarry Smith   Collective
3444feb78a15SHong Zhang 
3445feb78a15SHong Zhang   Input Parameters:
3446feb78a15SHong Zhang + comm   - MPI communicator
3447c0c276a7Ssdargavi . M      - the global row size
3448c0c276a7Ssdargavi . N      - the global column size
3449feb78a15SHong Zhang . A      - "diagonal" portion of matrix
3450c0c276a7Ssdargavi . B      - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray
3451a3156c1cSJunchao Zhang - garray - either `NULL` or the global index of `B` columns. If not `NULL`, it should be allocated by `PetscMalloc1()` and will be owned by `mat` thereafter.
3452feb78a15SHong Zhang 
3453feb78a15SHong Zhang   Output Parameter:
34542ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix
345527430b45SBarry Smith 
3456feb78a15SHong Zhang   Level: advanced
3457feb78a15SHong Zhang 
3458feb78a15SHong Zhang   Notes:
345911a5261eSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix.
346011a5261eSBarry Smith 
3461c0c276a7Ssdargavi   `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore.
3462feb78a15SHong Zhang 
3463a3156c1cSJunchao Zhang   If `garray` is `NULL`, `B` will be compacted to use local indices. In this sense, `B`'s sparsity pattern (nonzerostate) will be changed. If `B` is a device matrix, we need to somehow also update
3464a3156c1cSJunchao Zhang   `B`'s copy on device.  We do so by increasing `B`'s nonzerostate. In use of `B` on device, device matrix types should detect this change (ref. internal routines `MatSeqAIJCUSPARSECopyToGPU()` or
3465a3156c1cSJunchao Zhang   `MatAssemblyEnd_SeqAIJKokkos()`) and will just destroy and then recreate the device copy of `B`. It is not optimal, but is easy to implement and less hacky. To avoid this overhead, try to compute `garray`
3466a3156c1cSJunchao Zhang   yourself, see algorithms in the private function `MatSetUpMultiply_MPIAIJ()`.
3467a3156c1cSJunchao Zhang 
3468b1dff882SJunchao Zhang   The `NULL`-ness of `garray` doesn't need to be collective, in other words, `garray` can be `NULL` on some processes while not on others.
3469b1dff882SJunchao Zhang 
34701cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()`
3471feb78a15SHong Zhang @*/
3472c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat)
3473d71ae5a4SJacob Faibussowitsch {
3474c0c276a7Ssdargavi   PetscInt    m, n;
34754ab4d6f4SRichard Tran Mills   MatType     mpi_mat_type;
3476f18d1d10SJunchao Zhang   Mat_MPIAIJ *mpiaij;
3477f18d1d10SJunchao Zhang   Mat         C;
3478feb78a15SHong Zhang 
3479feb78a15SHong Zhang   PetscFunctionBegin;
3480f18d1d10SJunchao Zhang   PetscCall(MatCreate(comm, &C));
34819566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &n));
348208401ef6SPierre Jolivet   PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N);
348358b7e2c1SStefano Zampini   PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs);
3484feb78a15SHong Zhang 
3485f18d1d10SJunchao Zhang   PetscCall(MatSetSizes(C, m, n, M, N));
34864ab4d6f4SRichard Tran Mills   /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */
34874ab4d6f4SRichard Tran Mills   PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type));
3488f18d1d10SJunchao Zhang   PetscCall(MatSetType(C, mpi_mat_type));
3489a3156c1cSJunchao Zhang   if (!garray) {
3490a3156c1cSJunchao Zhang     const PetscScalar *ba;
3491a3156c1cSJunchao Zhang 
3492a3156c1cSJunchao Zhang     B->nonzerostate++;
3493a3156c1cSJunchao Zhang     PetscCall(MatSeqAIJGetArrayRead(B, &ba)); /* Since we will destroy B's device copy, we need to make sure the host copy is up to date */
3494a3156c1cSJunchao Zhang     PetscCall(MatSeqAIJRestoreArrayRead(B, &ba));
3495a3156c1cSJunchao Zhang   }
34964ab4d6f4SRichard Tran Mills 
3497f18d1d10SJunchao Zhang   PetscCall(MatSetBlockSizes(C, A->rmap->bs, A->cmap->bs));
3498f18d1d10SJunchao Zhang   PetscCall(PetscLayoutSetUp(C->rmap));
3499f18d1d10SJunchao Zhang   PetscCall(PetscLayoutSetUp(C->cmap));
3500feb78a15SHong Zhang 
3501f18d1d10SJunchao Zhang   mpiaij              = (Mat_MPIAIJ *)C->data;
3502c0c276a7Ssdargavi   mpiaij->A           = A;
3503c0c276a7Ssdargavi   mpiaij->B           = B;
3504c0c276a7Ssdargavi   mpiaij->garray      = garray;
3505f18d1d10SJunchao Zhang   C->preallocated     = PETSC_TRUE;
3506f18d1d10SJunchao Zhang   C->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */
3507c0c276a7Ssdargavi 
3508f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3509f18d1d10SJunchao Zhang   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3510c0c276a7Ssdargavi   /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and
3511c0c276a7Ssdargavi    also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced
3512c0c276a7Ssdargavi    */
3513f18d1d10SJunchao Zhang   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3514f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
3515f18d1d10SJunchao Zhang   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
3516f18d1d10SJunchao Zhang   *mat = C;
35173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3518feb78a15SHong Zhang }
3519feb78a15SHong Zhang 
3520ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *);
35214aa3045dSJed Brown 
3522d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat)
3523d71ae5a4SJacob Faibussowitsch {
352498b658c4SHong Zhang   PetscInt        i, m, n, rstart, row, rend, nz, j, bs, cbs;
352585f27616SHong Zhang   PetscInt       *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
352698b658c4SHong Zhang   Mat_MPIAIJ     *a = (Mat_MPIAIJ *)mat->data;
35271fd43edeSHong Zhang   Mat             M, Msub, B = a->B;
352898b658c4SHong Zhang   MatScalar      *aa;
352900e6dbe6SBarry Smith   Mat_SeqAIJ     *aij;
3530a31a438cSHong Zhang   PetscInt       *garray = a->garray, *colsub, Ncols;
353198b658c4SHong Zhang   PetscInt        count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend;
353298b658c4SHong Zhang   IS              iscol_sub, iscmap;
353398b658c4SHong Zhang   const PetscInt *is_idx, *cmap;
353418e627e3SHong Zhang   PetscBool       allcolumns = PETSC_FALSE;
3535a31a438cSHong Zhang   MPI_Comm        comm;
35367e2c5f70SBarry Smith 
3537a0ff6018SBarry Smith   PetscFunctionBegin;
35389566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
3539d5761cdaSHong Zhang   if (call == MAT_REUSE_MATRIX) {
35409566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub));
354128b400f6SJacob Faibussowitsch     PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse");
35429566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol_sub, &count));
3543d5761cdaSHong Zhang 
35449566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap));
354528b400f6SJacob Faibussowitsch     PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse");
3546d5761cdaSHong Zhang 
35479566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub));
354828b400f6SJacob Faibussowitsch     PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
3549d5761cdaSHong Zhang 
35509566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub));
3551d5761cdaSHong Zhang 
3552d5761cdaSHong Zhang   } else { /* call == MAT_INITIAL_MATRIX) */
35533b00a383SHong Zhang     PetscBool flg;
35543b00a383SHong Zhang 
35559566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &n));
35569566063dSJacob Faibussowitsch     PetscCall(ISGetSize(iscol, &Ncols));
3557bcae8d28SHong Zhang 
35583b00a383SHong Zhang     /* (1) iscol -> nonscalable iscol_local */
3559366a327dSHong Zhang     /* Check for special case: each processor gets entire matrix columns */
35609566063dSJacob Faibussowitsch     PetscCall(ISIdentity(iscol_local, &flg));
3561366a327dSHong Zhang     if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE;
35625440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
3563366a327dSHong Zhang     if (allcolumns) {
3564366a327dSHong Zhang       iscol_sub = iscol_local;
35659566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)iscol_local));
35669566063dSJacob Faibussowitsch       PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap));
3567366a327dSHong Zhang 
35683b00a383SHong Zhang     } else {
35691358a193SHong Zhang       /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */
3570244c7f15SHong Zhang       PetscInt *idx, *cmap1, k;
35719566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &idx));
35729566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(Ncols, &cmap1));
35739566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(iscol_local, &is_idx));
35748d2139bdSHong Zhang       count = 0;
3575a31a438cSHong Zhang       k     = 0;
3576a31a438cSHong Zhang       for (i = 0; i < Ncols; i++) {
3577a31a438cSHong Zhang         j = is_idx[i];
3578a31a438cSHong Zhang         if (j >= cstart && j < cend) {
3579a31a438cSHong Zhang           /* diagonal part of mat */
35808d2139bdSHong Zhang           idx[count]     = j;
3581366a327dSHong Zhang           cmap1[count++] = i; /* column index in submat */
35824a3daf6eSHong Zhang         } else if (Bn) {
3583a31a438cSHong Zhang           /* off-diagonal part of mat */
3584a31a438cSHong Zhang           if (j == garray[k]) {
35858d2139bdSHong Zhang             idx[count]     = j;
3586a31a438cSHong Zhang             cmap1[count++] = i; /* column index in submat */
3587a31a438cSHong Zhang           } else if (j > garray[k]) {
3588a31a438cSHong Zhang             while (j > garray[k] && k < Bn - 1) k++;
3589a31a438cSHong Zhang             if (j == garray[k]) {
3590a31a438cSHong Zhang               idx[count]     = j;
3591a31a438cSHong Zhang               cmap1[count++] = i; /* column index in submat */
35928d2139bdSHong Zhang             }
35938d2139bdSHong Zhang           }
35948d2139bdSHong Zhang         }
35958d2139bdSHong Zhang       }
35969566063dSJacob Faibussowitsch       PetscCall(ISRestoreIndices(iscol_local, &is_idx));
35978d2139bdSHong Zhang 
35989566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub));
35999566063dSJacob Faibussowitsch       PetscCall(ISGetBlockSize(iscol, &cbs));
36009566063dSJacob Faibussowitsch       PetscCall(ISSetBlockSize(iscol_sub, cbs));
3601b6d9b4e0SHong Zhang 
36029566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap));
3603a31a438cSHong Zhang     }
36048b3fa1f7SHong Zhang 
36053b00a383SHong Zhang     /* (3) Create sequential Msub */
36069566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub));
3607d5761cdaSHong Zhang   }
36088d2139bdSHong Zhang 
36099566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol_sub, &count));
361057508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Msub->data;
361198b658c4SHong Zhang   ii  = aij->i;
36129566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(iscmap, &cmap));
3613a0ff6018SBarry Smith 
3614a0ff6018SBarry Smith   /*
3615a0ff6018SBarry Smith       m - number of local rows
3616a31a438cSHong Zhang       Ncols - number of columns (same on all processors)
3617a0ff6018SBarry Smith       rstart - first row in new global matrix generated
3618a0ff6018SBarry Smith   */
36199566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Msub, &m, NULL));
362098b658c4SHong Zhang 
36213b00a383SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
36223b00a383SHong Zhang     /* (4) Create parallel newmat */
362398b658c4SHong Zhang     PetscMPIInt rank, size;
3624bcae8d28SHong Zhang     PetscInt    csize;
362598b658c4SHong Zhang 
36269566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_size(comm, &size));
36279566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
362800e6dbe6SBarry Smith 
3629a0ff6018SBarry Smith     /*
363000e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
363100e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
3632a0ff6018SBarry Smith     */
363300e6dbe6SBarry Smith 
363400e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
36359566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(iscol, &csize));
36366a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
36379566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3638a31a438cSHong Zhang       if (mglobal == Ncols) { /* square matrix */
3639e2c4fddaSBarry Smith         nlocal = m;
36406a6a5d1dSBarry Smith       } else {
3641a31a438cSHong Zhang         nlocal = Ncols / size + ((Ncols % size) > rank);
3642ab50ec6bSBarry Smith       }
3643ab50ec6bSBarry Smith     } else {
36446a6a5d1dSBarry Smith       nlocal = csize;
36456a6a5d1dSBarry Smith     }
36469566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
364700e6dbe6SBarry Smith     rstart = rend - nlocal;
3648aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols);
364900e6dbe6SBarry Smith 
365000e6dbe6SBarry Smith     /* next, compute all the lengths */
365198b658c4SHong Zhang     jj = aij->j;
36529566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
365300e6dbe6SBarry Smith     olens = dlens + m;
365400e6dbe6SBarry Smith     for (i = 0; i < m; i++) {
365500e6dbe6SBarry Smith       jend = ii[i + 1] - ii[i];
365600e6dbe6SBarry Smith       olen = 0;
365700e6dbe6SBarry Smith       dlen = 0;
365800e6dbe6SBarry Smith       for (j = 0; j < jend; j++) {
365915b2185cSHong Zhang         if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++;
366000e6dbe6SBarry Smith         else dlen++;
366100e6dbe6SBarry Smith         jj++;
366200e6dbe6SBarry Smith       }
366300e6dbe6SBarry Smith       olens[i] = olen;
366400e6dbe6SBarry Smith       dlens[i] = dlen;
366500e6dbe6SBarry Smith     }
3666b6d9b4e0SHong Zhang 
36679566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(isrow, &bs));
36689566063dSJacob Faibussowitsch     PetscCall(ISGetBlockSize(iscol, &cbs));
366998b658c4SHong Zhang 
36709566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
36719566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols));
36729566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
36739566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
36749566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
36759566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3676d5761cdaSHong Zhang 
3677d5761cdaSHong Zhang   } else { /* call == MAT_REUSE_MATRIX */
3678a0ff6018SBarry Smith     M = *newmat;
36799566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &i, NULL));
368008401ef6SPierre Jolivet     PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
36819566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3682c48de900SBarry Smith     /*
3683c48de900SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3684c48de900SBarry Smith        rather than the slower MatSetValues().
3685c48de900SBarry Smith     */
3686c48de900SBarry Smith     M->was_assembled = PETSC_TRUE;
3687c48de900SBarry Smith     M->assembled     = PETSC_FALSE;
3688a0ff6018SBarry Smith   }
3689548ecf4dSHong Zhang 
36903b00a383SHong Zhang   /* (5) Set values of Msub to *newmat */
36919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(count, &colsub));
36929566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, NULL));
369398b658c4SHong Zhang 
369498b658c4SHong Zhang   jj = aij->j;
36959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa));
3696a0ff6018SBarry Smith   for (i = 0; i < m; i++) {
3697a0ff6018SBarry Smith     row = rstart + i;
369800e6dbe6SBarry Smith     nz  = ii[i + 1] - ii[i];
369915b2185cSHong Zhang     for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]];
37009566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES));
37019371c9d4SSatish Balay     jj += nz;
37029371c9d4SSatish Balay     aa += nz;
3703a0ff6018SBarry Smith   }
37049566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa));
37059566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(iscmap, &cmap));
3706a0ff6018SBarry Smith 
37079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
37089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3709fee21e36SBarry Smith 
37109566063dSJacob Faibussowitsch   PetscCall(PetscFree(colsub));
371198b658c4SHong Zhang 
371298b658c4SHong Zhang   /* save Msub, iscol_sub and iscmap used in processor for next request */
3713fee21e36SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
37143b00a383SHong Zhang     *newmat = M;
3715f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub));
37169566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Msub));
371798b658c4SHong Zhang 
3718f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub));
37199566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_sub));
372098b658c4SHong Zhang 
3721f4f49eeaSPierre Jolivet     PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap));
37229566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscmap));
3723bcae8d28SHong Zhang 
3724bcae8d28SHong Zhang     if (iscol_local) {
3725f4f49eeaSPierre Jolivet       PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
37269566063dSJacob Faibussowitsch       PetscCall(ISDestroy(&iscol_local));
3727bcae8d28SHong Zhang     }
372898b658c4SHong Zhang   }
37293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3730a0ff6018SBarry Smith }
3731273d9f13SBarry Smith 
3732df40acb1SHong Zhang /*
3733df40acb1SHong Zhang     Not great since it makes two copies of the submatrix, first an SeqAIJ
3734df40acb1SHong Zhang   in local and then by concatenating the local matrices the end result.
3735df40acb1SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIAIJ()
3736df40acb1SHong Zhang 
373711a5261eSBarry Smith   This requires a sequential iscol with all indices.
3738df40acb1SHong Zhang */
3739d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
3740d71ae5a4SJacob Faibussowitsch {
3741df40acb1SHong Zhang   PetscMPIInt rank, size;
3742df40acb1SHong Zhang   PetscInt    i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs;
3743df40acb1SHong Zhang   PetscInt   *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
3744df40acb1SHong Zhang   Mat         M, Mreuse;
374598b658c4SHong Zhang   MatScalar  *aa, *vwork;
3746df40acb1SHong Zhang   MPI_Comm    comm;
3747df40acb1SHong Zhang   Mat_SeqAIJ *aij;
37480b27a90eSHong Zhang   PetscBool   colflag, allcolumns = PETSC_FALSE;
3749df40acb1SHong Zhang 
3750df40acb1SHong Zhang   PetscFunctionBegin;
37519566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
37529566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
37539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3754df40acb1SHong Zhang 
37550b27a90eSHong Zhang   /* Check for special case: each processor gets entire matrix columns */
37569566063dSJacob Faibussowitsch   PetscCall(ISIdentity(iscol, &colflag));
37579566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &n));
37580b27a90eSHong Zhang   if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE;
37595440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
37600b27a90eSHong Zhang 
3761df40acb1SHong Zhang   if (call == MAT_REUSE_MATRIX) {
37629566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
376328b400f6SJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
37649566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse));
3765df40acb1SHong Zhang   } else {
37669566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse));
3767df40acb1SHong Zhang   }
3768df40acb1SHong Zhang 
3769df40acb1SHong Zhang   /*
3770df40acb1SHong Zhang       m - number of local rows
3771df40acb1SHong Zhang       n - number of columns (same on all processors)
3772df40acb1SHong Zhang       rstart - first row in new global matrix generated
3773df40acb1SHong Zhang   */
37749566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
37759566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs));
3776df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
377757508eceSPierre Jolivet     aij = (Mat_SeqAIJ *)Mreuse->data;
3778df40acb1SHong Zhang     ii  = aij->i;
3779df40acb1SHong Zhang     jj  = aij->j;
3780df40acb1SHong Zhang 
3781df40acb1SHong Zhang     /*
3782df40acb1SHong Zhang         Determine the number of non-zeros in the diagonal and off-diagonal
3783df40acb1SHong Zhang         portions of the matrix in order to do correct preallocation
3784df40acb1SHong Zhang     */
3785df40acb1SHong Zhang 
3786df40acb1SHong Zhang     /* first get start and end of "diagonal" columns */
3787df40acb1SHong Zhang     if (csize == PETSC_DECIDE) {
37889566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
3789df40acb1SHong Zhang       if (mglobal == n) { /* square matrix */
3790df40acb1SHong Zhang         nlocal = m;
3791df40acb1SHong Zhang       } else {
3792df40acb1SHong Zhang         nlocal = n / size + ((n % size) > rank);
3793df40acb1SHong Zhang       }
3794df40acb1SHong Zhang     } else {
3795df40acb1SHong Zhang       nlocal = csize;
3796df40acb1SHong Zhang     }
37979566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
3798df40acb1SHong Zhang     rstart = rend - nlocal;
3799aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
3800df40acb1SHong Zhang 
3801df40acb1SHong Zhang     /* next, compute all the lengths */
38029566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(2 * m + 1, &dlens));
3803df40acb1SHong Zhang     olens = dlens + m;
3804df40acb1SHong Zhang     for (i = 0; i < m; i++) {
3805df40acb1SHong Zhang       jend = ii[i + 1] - ii[i];
3806df40acb1SHong Zhang       olen = 0;
3807df40acb1SHong Zhang       dlen = 0;
3808df40acb1SHong Zhang       for (j = 0; j < jend; j++) {
3809df40acb1SHong Zhang         if (*jj < rstart || *jj >= rend) olen++;
3810df40acb1SHong Zhang         else dlen++;
3811df40acb1SHong Zhang         jj++;
3812df40acb1SHong Zhang       }
3813df40acb1SHong Zhang       olens[i] = olen;
3814df40acb1SHong Zhang       dlens[i] = dlen;
3815df40acb1SHong Zhang     }
38169566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
38179566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n));
38189566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(M, bs, cbs));
38199566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
38209566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens));
38219566063dSJacob Faibussowitsch     PetscCall(PetscFree(dlens));
3822df40acb1SHong Zhang   } else {
3823df40acb1SHong Zhang     PetscInt ml, nl;
3824df40acb1SHong Zhang 
3825df40acb1SHong Zhang     M = *newmat;
38269566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
382708401ef6SPierre Jolivet     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
38289566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
3829df40acb1SHong Zhang     /*
3830df40acb1SHong Zhang          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
3831df40acb1SHong Zhang        rather than the slower MatSetValues().
3832df40acb1SHong Zhang     */
3833df40acb1SHong Zhang     M->was_assembled = PETSC_TRUE;
3834df40acb1SHong Zhang     M->assembled     = PETSC_FALSE;
3835df40acb1SHong Zhang   }
38369566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
383757508eceSPierre Jolivet   aij = (Mat_SeqAIJ *)Mreuse->data;
3838df40acb1SHong Zhang   ii  = aij->i;
3839df40acb1SHong Zhang   jj  = aij->j;
38402e5835c6SStefano Zampini 
38412e5835c6SStefano Zampini   /* trigger copy to CPU if needed */
38429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa));
3843df40acb1SHong Zhang   for (i = 0; i < m; i++) {
3844df40acb1SHong Zhang     row   = rstart + i;
3845df40acb1SHong Zhang     nz    = ii[i + 1] - ii[i];
38469371c9d4SSatish Balay     cwork = jj;
38478e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
38489371c9d4SSatish Balay     vwork = aa;
38498e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz);
38509566063dSJacob Faibussowitsch     PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
3851df40acb1SHong Zhang   }
38529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa));
3853df40acb1SHong Zhang 
38549566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
38559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
3856df40acb1SHong Zhang   *newmat = M;
3857df40acb1SHong Zhang 
3858df40acb1SHong Zhang   /* save submatrix used in processor for next request */
3859df40acb1SHong Zhang   if (call == MAT_INITIAL_MATRIX) {
38609566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
38619566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&Mreuse));
3862df40acb1SHong Zhang   }
38633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3864df40acb1SHong Zhang }
3865df40acb1SHong Zhang 
3866ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
3867d71ae5a4SJacob Faibussowitsch {
38686a3d2595SBarry Smith   PetscInt        m, cstart, cend, j, nnz, i, d, *ld;
38699f0612e4SBarry Smith   PetscInt       *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart;
3870ccd8e176SBarry Smith   const PetscInt *JJ;
3871eeb24464SBarry Smith   PetscBool       nooffprocentries;
38726a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)B->data;
3873ccd8e176SBarry Smith 
3874ccd8e176SBarry Smith   PetscFunctionBegin;
38759566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
38769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
3877d0f46423SBarry Smith   m       = B->rmap->n;
3878d0f46423SBarry Smith   cstart  = B->cmap->rstart;
3879d0f46423SBarry Smith   cend    = B->cmap->rend;
3880d0f46423SBarry Smith   rstart  = B->rmap->rstart;
38819f0612e4SBarry Smith   irstart = Ii[0];
3882899cda47SBarry Smith 
38839566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz));
3884ccd8e176SBarry Smith 
388576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
38868f8f2f0dSBarry Smith     for (i = 0; i < m; i++) {
3887ecc77c7aSBarry Smith       nnz = Ii[i + 1] - Ii[i];
38889f0612e4SBarry Smith       JJ  = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
388908401ef6SPierre Jolivet       PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz);
389008401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]);
389108401ef6SPierre Jolivet       PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N);
3892ecc77c7aSBarry Smith     }
389376bd3646SJed Brown   }
3894ecc77c7aSBarry Smith 
38958f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3896b7940d39SSatish Balay     nnz     = Ii[i + 1] - Ii[i];
38979f0612e4SBarry Smith     JJ      = PetscSafePointerPlusOffset(J, Ii[i] - irstart);
3898ccd8e176SBarry Smith     nnz_max = PetscMax(nnz_max, nnz);
3899ccd8e176SBarry Smith     d       = 0;
39000daa03b5SJed Brown     for (j = 0; j < nnz; j++) {
39010daa03b5SJed Brown       if (cstart <= JJ[j] && JJ[j] < cend) d++;
3902ccd8e176SBarry Smith     }
3903ccd8e176SBarry Smith     d_nnz[i] = d;
3904ccd8e176SBarry Smith     o_nnz[i] = nnz - d;
3905ccd8e176SBarry Smith   }
39069566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz));
39079566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
3908ccd8e176SBarry Smith 
39098f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
3910ccd8e176SBarry Smith     ii = i + rstart;
39119f0612e4SBarry Smith     PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES));
3912ccd8e176SBarry Smith   }
3913eeb24464SBarry Smith   nooffprocentries    = B->nooffprocentries;
3914eeb24464SBarry Smith   B->nooffprocentries = PETSC_TRUE;
39159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
39169566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
3917eeb24464SBarry Smith   B->nooffprocentries = nooffprocentries;
3918ccd8e176SBarry Smith 
39196a3d2595SBarry Smith   /* count number of entries below block diagonal */
39206a3d2595SBarry Smith   PetscCall(PetscFree(Aij->ld));
39216a3d2595SBarry Smith   PetscCall(PetscCalloc1(m, &ld));
39226a3d2595SBarry Smith   Aij->ld = ld;
39236a3d2595SBarry Smith   for (i = 0; i < m; i++) {
39246a3d2595SBarry Smith     nnz = Ii[i + 1] - Ii[i];
39256a3d2595SBarry Smith     j   = 0;
3926ad540459SPierre Jolivet     while (j < nnz && J[j] < cstart) j++;
39276a3d2595SBarry Smith     ld[i] = j;
3928720a2405SPierre Jolivet     if (J) J += nnz;
39296a3d2595SBarry Smith   }
39306a3d2595SBarry Smith 
39319566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
39323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3933ccd8e176SBarry Smith }
3934ccd8e176SBarry Smith 
39351eea217eSSatish Balay /*@
393611a5261eSBarry Smith   MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format
3937ccd8e176SBarry Smith   (the default parallel PETSc format).
3938ccd8e176SBarry Smith 
3939d083f849SBarry Smith   Collective
3940ccd8e176SBarry Smith 
3941ccd8e176SBarry Smith   Input Parameters:
3942a1661176SMatthew Knepley + B - the matrix
3943d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero)
3944d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero)
3945ccd8e176SBarry Smith - v - optional values in the matrix
3946ccd8e176SBarry Smith 
3947ccd8e176SBarry Smith   Level: developer
3948ccd8e176SBarry Smith 
394912251496SSatish Balay   Notes:
39502ef1f0ffSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
39512ef1f0ffSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
395211a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
395312251496SSatish Balay 
39542ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
395512251496SSatish Balay 
3956a4bd8bc0SBarry Smith   A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`.
3957a4bd8bc0SBarry Smith 
3958a4bd8bc0SBarry Smith   You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted.
3959a4bd8bc0SBarry Smith 
3960a4bd8bc0SBarry Smith   If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use
3961a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
3962a4bd8bc0SBarry Smith 
396312251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
396412251496SSatish Balay   row-major ordering.. i.e for the following matrix, the input data expected is
3965c5e4d11fSDmitry Karpeev   as shown
396627430b45SBarry Smith .vb
396727430b45SBarry Smith         1 0 0
396827430b45SBarry Smith         2 0 3     P0
396927430b45SBarry Smith        -------
397027430b45SBarry Smith         4 5 6     P1
397127430b45SBarry Smith 
397227430b45SBarry Smith      Process0 [P0] rows_owned=[0,1]
397327430b45SBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
397427430b45SBarry Smith         j =  {0,0,2}  [size = 3]
397527430b45SBarry Smith         v =  {1,2,3}  [size = 3]
397627430b45SBarry Smith 
397727430b45SBarry Smith      Process1 [P1] rows_owned=[2]
397827430b45SBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
397927430b45SBarry Smith         j =  {0,1,2}  [size = 3]
398027430b45SBarry Smith         v =  {4,5,6}  [size = 3]
398127430b45SBarry Smith .ve
398212251496SSatish Balay 
3983fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`,
3984a4bd8bc0SBarry Smith           `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
3985ccd8e176SBarry Smith @*/
3986d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
3987d71ae5a4SJacob Faibussowitsch {
3988ccd8e176SBarry Smith   PetscFunctionBegin;
3989cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v));
39903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3991ccd8e176SBarry Smith }
3992ccd8e176SBarry Smith 
39935d83a8b1SBarry Smith /*@
399411a5261eSBarry Smith   MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format
3995273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
3996273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
399720f4b53cSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
3998273d9f13SBarry Smith 
3999d083f849SBarry Smith   Collective
4000273d9f13SBarry Smith 
4001273d9f13SBarry Smith   Input Parameters:
40021c4f3114SJed Brown + B     - the matrix
4003273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4004273d9f13SBarry Smith            (same value is used for all local rows)
4005273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4006273d9f13SBarry Smith            DIAGONAL portion of the local submatrix (possibly different for each row)
40072ef1f0ffSBarry Smith            or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure.
4008273d9f13SBarry Smith            The size of this array is equal to the number of local rows, i.e 'm'.
40093287b5eaSJed Brown            For matrices that will be factored, you must leave room for (and set)
40103287b5eaSJed Brown            the diagonal entry even if it is zero.
4011273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4012273d9f13SBarry Smith            submatrix (same value is used for all local rows).
4013273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4014273d9f13SBarry Smith            OFF-DIAGONAL portion of the local submatrix (possibly different for
40152ef1f0ffSBarry Smith            each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero
4016273d9f13SBarry Smith            structure. The size of this array is equal to the number
4017273d9f13SBarry Smith            of local rows, i.e 'm'.
4018273d9f13SBarry Smith 
40192920cce0SJacob Faibussowitsch   Example Usage:
402027430b45SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
402127430b45SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
402227430b45SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
402327430b45SBarry Smith   as follows
402427430b45SBarry Smith 
402527430b45SBarry Smith .vb
402627430b45SBarry Smith             1  2  0  |  0  3  0  |  0  4
402727430b45SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
402827430b45SBarry Smith             9  0 10  | 11  0  0  | 12  0
402927430b45SBarry Smith     -------------------------------------
403027430b45SBarry Smith            13  0 14  | 15 16 17  |  0  0
403127430b45SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
403227430b45SBarry Smith             0  0  0  | 22 23  0  | 24  0
403327430b45SBarry Smith     -------------------------------------
403427430b45SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
403527430b45SBarry Smith            30  0  0  | 31 32 33  |  0 34
403627430b45SBarry Smith .ve
403727430b45SBarry Smith 
403827430b45SBarry Smith   This can be represented as a collection of submatrices as
403927430b45SBarry Smith .vb
404027430b45SBarry Smith       A B C
404127430b45SBarry Smith       D E F
404227430b45SBarry Smith       G H I
404327430b45SBarry Smith .ve
404427430b45SBarry Smith 
404527430b45SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
404627430b45SBarry Smith   owned by proc1, G,H,I are owned by proc2.
404727430b45SBarry Smith 
404827430b45SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
404927430b45SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
405027430b45SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
405127430b45SBarry Smith 
405227430b45SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
405327430b45SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
405427430b45SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
405527430b45SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
405627430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
40575163b989SNuno Nobre   matrix, and [DF] as another `MATSEQAIJ` matrix.
405827430b45SBarry Smith 
405920f4b53cSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
40605163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
40615163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
40625163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
40635163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
406420f4b53cSBarry Smith   In this case, the values of `d_nz`, `o_nz` are
406527430b45SBarry Smith .vb
406627430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
406727430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
406827430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
406927430b45SBarry Smith .ve
407020f4b53cSBarry Smith   We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This
407127430b45SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
407227430b45SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
407327430b45SBarry Smith   34 values.
407427430b45SBarry Smith 
407520f4b53cSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
407627430b45SBarry Smith   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
407720f4b53cSBarry Smith   In the above case the values for `d_nnz`, `o_nnz` are
407827430b45SBarry Smith .vb
407927430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
408027430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
408127430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
408227430b45SBarry Smith .ve
408327430b45SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
408427430b45SBarry Smith   hence pre-allocation is perfect.
408527430b45SBarry Smith 
408627430b45SBarry Smith   Level: intermediate
408727430b45SBarry Smith 
408827430b45SBarry Smith   Notes:
408949a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
409049a6f317SBarry Smith 
409127430b45SBarry Smith   The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran
40920598bfebSBarry Smith   storage.  The stored row and column indices begin with zero.
4093651615e1SBarry Smith   See [Sparse Matrices](sec_matsparse) for details.
4094273d9f13SBarry Smith 
4095273d9f13SBarry Smith   The parallel matrix is partitioned such that the first m0 rows belong to
4096273d9f13SBarry Smith   process 0, the next m1 rows belong to process 1, the next m2 rows belong
4097273d9f13SBarry Smith   to process 2 etc.. where m0,m1,m2... are the input parameter 'm'.
4098273d9f13SBarry Smith 
4099273d9f13SBarry Smith   The DIAGONAL portion of the local submatrix of a processor can be defined
4100a05b864aSJed Brown   as the submatrix which is obtained by extraction the part corresponding to
4101a05b864aSJed Brown   the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the
4102a05b864aSJed Brown   first row that belongs to the processor, r2 is the last row belonging to
4103a05b864aSJed Brown   the this processor, and c1-c2 is range of indices of the local part of a
4104a05b864aSJed Brown   vector suitable for applying the matrix to.  This is an mxn matrix.  In the
4105a05b864aSJed Brown   common case of a square matrix, the row and column ranges are the same and
4106a05b864aSJed Brown   the DIAGONAL part is also square. The remaining portion of the local
4107a05b864aSJed Brown   submatrix (mxN) constitute the OFF-DIAGONAL portion.
4108273d9f13SBarry Smith 
41092ef1f0ffSBarry Smith   If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored.
4110273d9f13SBarry Smith 
411127430b45SBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
4112aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
411327430b45SBarry Smith   You can also run with the option `-info` and look for messages with the string
4114aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
4115aa95bbe8SBarry Smith 
41161cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`,
4117a4bd8bc0SBarry Smith           `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
4118273d9f13SBarry Smith @*/
4119d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
4120d71ae5a4SJacob Faibussowitsch {
4121273d9f13SBarry Smith   PetscFunctionBegin;
41226ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
41236ba663aaSJed Brown   PetscValidType(B, 1);
4124cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz));
41253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4126273d9f13SBarry Smith }
4127273d9f13SBarry Smith 
412858d36128SBarry Smith /*@
412911a5261eSBarry Smith   MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard
41308f8f2f0dSBarry Smith   CSR format for the local rows.
41312fb0ec9aSBarry Smith 
4132d083f849SBarry Smith   Collective
41332fb0ec9aSBarry Smith 
41342fb0ec9aSBarry Smith   Input Parameters:
41352fb0ec9aSBarry Smith + comm - MPI communicator
413611a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
41372fb0ec9aSBarry Smith . n    - This value should be the same as the local size used in creating the
4138d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have
4139d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices n is almost always `m`.
4140d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
4141d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
41425693b835SJunchao Zhang . i    - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
41435693b835SJunchao Zhang . j    - global column indices
4144f1f2ae84SBarry Smith - a    - optional matrix values
41452fb0ec9aSBarry Smith 
41462fb0ec9aSBarry Smith   Output Parameter:
41472fb0ec9aSBarry Smith . mat - the matrix
414803bfb495SBarry Smith 
41492fb0ec9aSBarry Smith   Level: intermediate
41502fb0ec9aSBarry Smith 
41512fb0ec9aSBarry Smith   Notes:
41522ef1f0ffSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
4153d4c8cc39SPierre Jolivet   thus you CANNOT change the matrix entries by changing the values of `a[]` after you have
4154d4c8cc39SPierre Jolivet   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
41552fb0ec9aSBarry Smith 
41562ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
415712251496SSatish Balay 
41585693b835SJunchao Zhang   Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()`
4159a4bd8bc0SBarry Smith 
41605693b835SJunchao Zhang   If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use
4161a4bd8bc0SBarry Smith   `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted.
4162a4bd8bc0SBarry Smith 
416312251496SSatish Balay   The format which is used for the sparse matrix input, is equivalent to a
4164d4c8cc39SPierre Jolivet   row-major ordering, i.e., for the following matrix, the input data expected is
4165c5e4d11fSDmitry Karpeev   as shown
41662ef1f0ffSBarry Smith .vb
41672ef1f0ffSBarry Smith         1 0 0
41682ef1f0ffSBarry Smith         2 0 3     P0
41692ef1f0ffSBarry Smith        -------
41702ef1f0ffSBarry Smith         4 5 6     P1
41718f8f2f0dSBarry Smith 
41722ef1f0ffSBarry Smith      Process0 [P0] rows_owned=[0,1]
41732ef1f0ffSBarry Smith         i =  {0,1,3}  [size = nrow+1  = 2+1]
41742ef1f0ffSBarry Smith         j =  {0,0,2}  [size = 3]
41752ef1f0ffSBarry Smith         v =  {1,2,3}  [size = 3]
41762fb0ec9aSBarry Smith 
41772ef1f0ffSBarry Smith      Process1 [P1] rows_owned=[2]
41782ef1f0ffSBarry Smith         i =  {0,3}    [size = nrow+1  = 1+1]
41792ef1f0ffSBarry Smith         j =  {0,1,2}  [size = 3]
41802ef1f0ffSBarry Smith         v =  {4,5,6}  [size = 3]
41812ef1f0ffSBarry Smith .ve
41822ef1f0ffSBarry Smith 
4183d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
41845693b835SJunchao Zhang           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
41852fb0ec9aSBarry Smith @*/
4186d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
4187d71ae5a4SJacob Faibussowitsch {
41882fb0ec9aSBarry Smith   PetscFunctionBegin;
418908401ef6SPierre Jolivet   PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
419008401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
41919566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
41929566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
41939566063dSJacob Faibussowitsch   /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */
41949566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
41959566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a));
41963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
41972fb0ec9aSBarry Smith }
41982fb0ec9aSBarry Smith 
41998f8f2f0dSBarry Smith /*@
420011a5261eSBarry Smith   MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard
42012ef1f0ffSBarry Smith   CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed
42022ef1f0ffSBarry Smith   from `MatCreateMPIAIJWithArrays()`
42036a3d2595SBarry Smith 
42046a3d2595SBarry Smith   Deprecated: Use `MatUpdateMPIAIJWithArray()`
42058f8f2f0dSBarry Smith 
42068f8f2f0dSBarry Smith   Collective
42078f8f2f0dSBarry Smith 
42088f8f2f0dSBarry Smith   Input Parameters:
42098f8f2f0dSBarry Smith + mat - the matrix
421011a5261eSBarry Smith . m   - number of local rows (Cannot be `PETSC_DECIDE`)
42118f8f2f0dSBarry Smith . n   - This value should be the same as the local size used in creating the
421211a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
42138f8f2f0dSBarry Smith        calculated if N is given) For square matrices n is almost always m.
421411a5261eSBarry Smith . M   - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
421511a5261eSBarry Smith . N   - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
42168f8f2f0dSBarry Smith . Ii  - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix
42178f8f2f0dSBarry Smith . J   - column indices
42188f8f2f0dSBarry Smith - v   - matrix values
42198f8f2f0dSBarry Smith 
42202ef1f0ffSBarry Smith   Level: deprecated
42218f8f2f0dSBarry Smith 
42221cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4223a4bd8bc0SBarry Smith           `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42248f8f2f0dSBarry Smith @*/
4225d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[])
4226d71ae5a4SJacob Faibussowitsch {
42276a3d2595SBarry Smith   PetscInt        nnz, i;
42288f8f2f0dSBarry Smith   PetscBool       nooffprocentries;
42298f8f2f0dSBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
4230fff043a9SJunchao Zhang   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
4231fff043a9SJunchao Zhang   PetscScalar    *ad, *ao;
42328f8f2f0dSBarry Smith   PetscInt        ldi, Iii, md;
42336a3d2595SBarry Smith   const PetscInt *Adi = Ad->i;
42346a3d2595SBarry Smith   PetscInt       *ld  = Aij->ld;
42358f8f2f0dSBarry Smith 
42368f8f2f0dSBarry Smith   PetscFunctionBegin;
4237aed4548fSBarry Smith   PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
423808401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
423908401ef6SPierre Jolivet   PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()");
424008401ef6SPierre Jolivet   PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()");
42418f8f2f0dSBarry Smith 
42429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
42439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
42448f8f2f0dSBarry Smith 
42458f8f2f0dSBarry Smith   for (i = 0; i < m; i++) {
42464c17f1ccSBarry Smith     if (PetscDefined(USE_DEBUG)) {
42474c17f1ccSBarry Smith       for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) {
42484c17f1ccSBarry Smith         PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i);
42494c17f1ccSBarry Smith         PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i);
42504c17f1ccSBarry Smith       }
42514c17f1ccSBarry Smith     }
42528f8f2f0dSBarry Smith     nnz = Ii[i + 1] - Ii[i];
42538f8f2f0dSBarry Smith     Iii = Ii[i];
42548f8f2f0dSBarry Smith     ldi = ld[i];
42558f8f2f0dSBarry Smith     md  = Adi[i + 1] - Adi[i];
42569566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao, v + Iii, ldi));
42579566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
42589566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
42598f8f2f0dSBarry Smith     ad += md;
42608f8f2f0dSBarry Smith     ao += nnz - md;
42618f8f2f0dSBarry Smith   }
42628f8f2f0dSBarry Smith   nooffprocentries      = mat->nooffprocentries;
42638f8f2f0dSBarry Smith   mat->nooffprocentries = PETSC_TRUE;
42649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
42659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
42669566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
42679566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
42689566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
42699566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
42709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
42718f8f2f0dSBarry Smith   mat->nooffprocentries = nooffprocentries;
42723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
42738f8f2f0dSBarry Smith }
42748f8f2f0dSBarry Smith 
42756a3d2595SBarry Smith /*@
427611a5261eSBarry Smith   MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values
42776a3d2595SBarry Smith 
42786a3d2595SBarry Smith   Collective
42796a3d2595SBarry Smith 
42806a3d2595SBarry Smith   Input Parameters:
42816a3d2595SBarry Smith + mat - the matrix
42826a3d2595SBarry Smith - v   - matrix values, stored by row
42836a3d2595SBarry Smith 
42846a3d2595SBarry Smith   Level: intermediate
42856a3d2595SBarry Smith 
4286a4bd8bc0SBarry Smith   Notes:
42876a3d2595SBarry Smith   The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()`
42886a3d2595SBarry Smith 
4289a4bd8bc0SBarry Smith   The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly
4290a4bd8bc0SBarry Smith 
42911cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4292a4bd8bc0SBarry Smith           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()`
42936a3d2595SBarry Smith @*/
4294d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[])
4295d71ae5a4SJacob Faibussowitsch {
42966a3d2595SBarry Smith   PetscInt        nnz, i, m;
42976a3d2595SBarry Smith   PetscBool       nooffprocentries;
42986a3d2595SBarry Smith   Mat_MPIAIJ     *Aij = (Mat_MPIAIJ *)mat->data;
42996a3d2595SBarry Smith   Mat_SeqAIJ     *Ad  = (Mat_SeqAIJ *)Aij->A->data;
43006a3d2595SBarry Smith   Mat_SeqAIJ     *Ao  = (Mat_SeqAIJ *)Aij->B->data;
43016a3d2595SBarry Smith   PetscScalar    *ad, *ao;
43026a3d2595SBarry Smith   const PetscInt *Adi = Ad->i, *Adj = Ao->i;
43036a3d2595SBarry Smith   PetscInt        ldi, Iii, md;
43046a3d2595SBarry Smith   PetscInt       *ld = Aij->ld;
43056a3d2595SBarry Smith 
43066a3d2595SBarry Smith   PetscFunctionBegin;
43076a3d2595SBarry Smith   m = mat->rmap->n;
43086a3d2595SBarry Smith 
43096a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad));
43106a3d2595SBarry Smith   PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao));
43116a3d2595SBarry Smith   Iii = 0;
43126a3d2595SBarry Smith   for (i = 0; i < m; i++) {
43136a3d2595SBarry Smith     nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i];
43146a3d2595SBarry Smith     ldi = ld[i];
43156a3d2595SBarry Smith     md  = Adi[i + 1] - Adi[i];
43166a3d2595SBarry Smith     PetscCall(PetscArraycpy(ad, v + Iii + ldi, md));
43176a3d2595SBarry Smith     ad += md;
4318810441c8SPierre Jolivet     if (ao) {
4319810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao, v + Iii, ldi));
4320810441c8SPierre Jolivet       PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md));
43216a3d2595SBarry Smith       ao += nnz - md;
4322810441c8SPierre Jolivet     }
43236a3d2595SBarry Smith     Iii += nnz;
43246a3d2595SBarry Smith   }
43256a3d2595SBarry Smith   nooffprocentries      = mat->nooffprocentries;
43266a3d2595SBarry Smith   mat->nooffprocentries = PETSC_TRUE;
43276a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad));
43286a3d2595SBarry Smith   PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao));
43296a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A));
43306a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B));
43316a3d2595SBarry Smith   PetscCall(PetscObjectStateIncrease((PetscObject)mat));
43326a3d2595SBarry Smith   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
43336a3d2595SBarry Smith   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
43346a3d2595SBarry Smith   mat->nooffprocentries = nooffprocentries;
43353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
43366a3d2595SBarry Smith }
43376a3d2595SBarry Smith 
43385d83a8b1SBarry Smith /*@
433911a5261eSBarry Smith   MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format
4340273d9f13SBarry Smith   (the default parallel PETSc format).  For good matrix assembly performance
4341273d9f13SBarry Smith   the user should preallocate the matrix storage by setting the parameters
43422ef1f0ffSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).
4343273d9f13SBarry Smith 
4344d083f849SBarry Smith   Collective
4345273d9f13SBarry Smith 
4346273d9f13SBarry Smith   Input Parameters:
4347273d9f13SBarry Smith + comm  - MPI communicator
434811a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
4349273d9f13SBarry Smith           This value should be the same as the local size used in creating the
4350273d9f13SBarry Smith           y vector for the matrix-vector product y = Ax.
4351273d9f13SBarry Smith . n     - This value should be the same as the local size used in creating the
435245f401ebSJose E. Roman           x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
4353273d9f13SBarry Smith           calculated if N is given) For square matrices n is almost always m.
435411a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
435511a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
4356273d9f13SBarry Smith . d_nz  - number of nonzeros per row in DIAGONAL portion of local submatrix
4357273d9f13SBarry Smith           (same value is used for all local rows)
4358273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the
4359273d9f13SBarry Smith           DIAGONAL portion of the local submatrix (possibly different for each row)
43602ef1f0ffSBarry Smith           or `NULL`, if `d_nz` is used to specify the nonzero structure.
4361273d9f13SBarry Smith           The size of this array is equal to the number of local rows, i.e 'm'.
4362273d9f13SBarry Smith . o_nz  - number of nonzeros per row in the OFF-DIAGONAL portion of local
4363273d9f13SBarry Smith           submatrix (same value is used for all local rows).
4364273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the
4365273d9f13SBarry Smith           OFF-DIAGONAL portion of the local submatrix (possibly different for
43662ef1f0ffSBarry Smith           each row) or `NULL`, if `o_nz` is used to specify the nonzero
4367273d9f13SBarry Smith           structure. The size of this array is equal to the number
4368273d9f13SBarry Smith           of local rows, i.e 'm'.
4369273d9f13SBarry Smith 
4370273d9f13SBarry Smith   Output Parameter:
4371273d9f13SBarry Smith . A - the matrix
4372273d9f13SBarry Smith 
437327430b45SBarry Smith   Options Database Keys:
437427430b45SBarry Smith + -mat_no_inode                     - Do not use inodes
437527430b45SBarry Smith . -mat_inode_limit <limit>          - Sets inode limit (max limit=5)
437627430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices.
4377727bdf9bSBarry Smith                                       See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter`
4378727bdf9bSBarry Smith                                       to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call.
437927430b45SBarry Smith 
43802ef1f0ffSBarry Smith   Level: intermediate
43812ef1f0ffSBarry Smith 
438227430b45SBarry Smith   Notes:
438377433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
4384f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
438511a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`]
4386175b88e8SBarry Smith 
438749a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
438849a6f317SBarry Smith 
43892ef1f0ffSBarry Smith   The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across
43902ef1f0ffSBarry Smith   processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate
4391273d9f13SBarry Smith   storage requirements for this matrix.
4392273d9f13SBarry Smith 
439311a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one
4394273d9f13SBarry Smith   processor than it must be used on all processors that share the object for
4395273d9f13SBarry Smith   that argument.
4396273d9f13SBarry Smith 
4397727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
4398727bdf9bSBarry Smith   `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
4399727bdf9bSBarry Smith 
4400273d9f13SBarry Smith   The user MUST specify either the local or global matrix dimensions
4401273d9f13SBarry Smith   (possibly both).
4402273d9f13SBarry Smith 
440333a7c187SSatish Balay   The parallel matrix is partitioned across processors such that the
4404727bdf9bSBarry Smith   first `m0` rows belong to process 0, the next `m1` rows belong to
4405727bdf9bSBarry Smith   process 1, the next `m2` rows belong to process 2, etc., where
4406727bdf9bSBarry Smith   `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores
440733a7c187SSatish Balay   values corresponding to [m x N] submatrix.
4408273d9f13SBarry Smith 
440933a7c187SSatish Balay   The columns are logically partitioned with the n0 columns belonging
441033a7c187SSatish Balay   to 0th partition, the next n1 columns belonging to the next
4411df3898eeSBarry Smith   partition etc.. where n0,n1,n2... are the input parameter 'n'.
441233a7c187SSatish Balay 
441333a7c187SSatish Balay   The DIAGONAL portion of the local submatrix on any given processor
441433a7c187SSatish Balay   is the submatrix corresponding to the rows and columns m,n
441533a7c187SSatish Balay   corresponding to the given processor. i.e diagonal matrix on
441633a7c187SSatish Balay   process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1]
441733a7c187SSatish Balay   etc. The remaining portion of the local submatrix [m x (N-n)]
441833a7c187SSatish Balay   constitute the OFF-DIAGONAL portion. The example below better
44190b4b7b1cSBarry Smith   illustrates this concept. The two matrices, the DIAGONAL portion and
44200b4b7b1cSBarry Smith   the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices.
442133a7c187SSatish Balay 
442233a7c187SSatish Balay   For a square global matrix we define each processor's diagonal portion
442333a7c187SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
442433a7c187SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
442533a7c187SSatish Balay   local matrix (a rectangular submatrix).
4426273d9f13SBarry Smith 
44272ef1f0ffSBarry Smith   If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored.
4428273d9f13SBarry Smith 
442997d05335SKris Buschelman   When calling this routine with a single process communicator, a matrix of
44302ef1f0ffSBarry Smith   type `MATSEQAIJ` is returned.  If a matrix of type `MATMPIAIJ` is desired for this
4431da57b5cdSKarl Rupp   type of communicator, use the construction mechanism
4432da57b5cdSKarl Rupp .vb
44332ef1f0ffSBarry Smith   MatCreate(..., &A);
44342ef1f0ffSBarry Smith   MatSetType(A, MATMPIAIJ);
44352ef1f0ffSBarry Smith   MatSetSizes(A, m, n, M, N);
44362ef1f0ffSBarry Smith   MatMPIAIJSetPreallocation(A, ...);
4437da57b5cdSKarl Rupp .ve
443897d05335SKris Buschelman 
4439273d9f13SBarry Smith   By default, this format uses inodes (identical nodes) when possible.
4440273d9f13SBarry Smith   We search for consecutive rows with the same nonzero structure, thereby
4441273d9f13SBarry Smith   reusing matrix information to achieve increased efficiency.
4442273d9f13SBarry Smith 
44432920cce0SJacob Faibussowitsch   Example Usage:
4444273d9f13SBarry Smith   Consider the following 8x8 matrix with 34 non-zero values, that is
4445273d9f13SBarry Smith   assembled across 3 processors. Lets assume that proc0 owns 3 rows,
4446273d9f13SBarry Smith   proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown
4447efc377ccSKarl Rupp   as follows
4448273d9f13SBarry Smith 
4449273d9f13SBarry Smith .vb
4450273d9f13SBarry Smith             1  2  0  |  0  3  0  |  0  4
4451273d9f13SBarry Smith     Proc0   0  5  6  |  7  0  0  |  8  0
4452273d9f13SBarry Smith             9  0 10  | 11  0  0  | 12  0
4453273d9f13SBarry Smith     -------------------------------------
4454273d9f13SBarry Smith            13  0 14  | 15 16 17  |  0  0
4455273d9f13SBarry Smith     Proc1   0 18  0  | 19 20 21  |  0  0
4456273d9f13SBarry Smith             0  0  0  | 22 23  0  | 24  0
4457273d9f13SBarry Smith     -------------------------------------
4458273d9f13SBarry Smith     Proc2  25 26 27  |  0  0 28  | 29  0
4459273d9f13SBarry Smith            30  0  0  | 31 32 33  |  0 34
4460273d9f13SBarry Smith .ve
4461273d9f13SBarry Smith 
4462da57b5cdSKarl Rupp   This can be represented as a collection of submatrices as
4463273d9f13SBarry Smith 
4464273d9f13SBarry Smith .vb
4465273d9f13SBarry Smith       A B C
4466273d9f13SBarry Smith       D E F
4467273d9f13SBarry Smith       G H I
4468273d9f13SBarry Smith .ve
4469273d9f13SBarry Smith 
4470273d9f13SBarry Smith   Where the submatrices A,B,C are owned by proc0, D,E,F are
4471273d9f13SBarry Smith   owned by proc1, G,H,I are owned by proc2.
4472273d9f13SBarry Smith 
4473273d9f13SBarry Smith   The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4474273d9f13SBarry Smith   The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively.
4475273d9f13SBarry Smith   The 'M','N' parameters are 8,8, and have the same values on all procs.
4476273d9f13SBarry Smith 
4477273d9f13SBarry Smith   The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are
4478273d9f13SBarry Smith   submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices
4479273d9f13SBarry Smith   corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively.
4480273d9f13SBarry Smith   Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL
448127430b45SBarry Smith   part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ`
44825163b989SNuno Nobre   matrix, and [DF] as another SeqAIJ matrix.
4483273d9f13SBarry Smith 
44842ef1f0ffSBarry Smith   When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are
44855163b989SNuno Nobre   allocated for every row of the local DIAGONAL submatrix, and `o_nz`
44865163b989SNuno Nobre   storage locations are allocated for every row of the OFF-DIAGONAL submatrix.
44875163b989SNuno Nobre   One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over
44885163b989SNuno Nobre   the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices.
44892ef1f0ffSBarry Smith   In this case, the values of `d_nz`,`o_nz` are
4490273d9f13SBarry Smith .vb
449127430b45SBarry Smith      proc0  dnz = 2, o_nz = 2
449227430b45SBarry Smith      proc1  dnz = 3, o_nz = 2
449327430b45SBarry Smith      proc2  dnz = 1, o_nz = 4
4494273d9f13SBarry Smith .ve
44952ef1f0ffSBarry Smith   We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This
4496273d9f13SBarry Smith   translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10
4497273d9f13SBarry Smith   for proc3. i.e we are using 12+15+10=37 storage locations to store
4498273d9f13SBarry Smith   34 values.
4499273d9f13SBarry Smith 
45002ef1f0ffSBarry Smith   When `d_nnz`, `o_nnz` parameters are specified, the storage is specified
4501a5b23f4aSJose E. Roman   for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices.
4502da57b5cdSKarl Rupp   In the above case the values for d_nnz,o_nnz are
4503273d9f13SBarry Smith .vb
450427430b45SBarry Smith      proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2]
450527430b45SBarry Smith      proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1]
450627430b45SBarry Smith      proc2 d_nnz = [1,1]   and o_nnz = [4,4]
4507273d9f13SBarry Smith .ve
4508273d9f13SBarry Smith   Here the space allocated is sum of all the above values i.e 34, and
4509273d9f13SBarry Smith   hence pre-allocation is perfect.
4510273d9f13SBarry Smith 
45111cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
4512727bdf9bSBarry Smith           `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`,
4513727bdf9bSBarry Smith           `MatGetOwnershipRangesColumn()`, `PetscLayout`
4514273d9f13SBarry Smith @*/
4515d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
4516d71ae5a4SJacob Faibussowitsch {
4517b1d57f15SBarry Smith   PetscMPIInt size;
4518273d9f13SBarry Smith 
4519273d9f13SBarry Smith   PetscFunctionBegin;
45209566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
45219566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
45229566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
4523273d9f13SBarry Smith   if (size > 1) {
45249566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIAIJ));
45259566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz));
4526273d9f13SBarry Smith   } else {
45279566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQAIJ));
45289566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz));
4529273d9f13SBarry Smith   }
45303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4531273d9f13SBarry Smith }
4532195d93cdSBarry Smith 
4533127ca0efSMatthew Knepley /*@C
45340ab4885dSBarry Smith   MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix
4535127ca0efSMatthew Knepley 
45362ef1f0ffSBarry Smith   Not Collective
4537127ca0efSMatthew Knepley 
4538127ca0efSMatthew Knepley   Input Parameter:
453911a5261eSBarry Smith . A - The `MATMPIAIJ` matrix
4540127ca0efSMatthew Knepley 
4541127ca0efSMatthew Knepley   Output Parameters:
454211a5261eSBarry Smith + Ad     - The local diagonal block as a `MATSEQAIJ` matrix
454311a5261eSBarry Smith . Ao     - The local off-diagonal block as a `MATSEQAIJ` matrix
45442ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix
4545127ca0efSMatthew Knepley 
45460ab4885dSBarry Smith   Level: intermediate
45470ab4885dSBarry Smith 
454811a5261eSBarry Smith   Note:
45492ef1f0ffSBarry Smith   The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns
45502ef1f0ffSBarry Smith   in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is
45512ef1f0ffSBarry Smith   the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these
4552127ca0efSMatthew Knepley   local column numbers to global column numbers in the original matrix.
4553127ca0efSMatthew Knepley 
4554ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ`
4555127ca0efSMatthew Knepley @*/
4556d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
4557d71ae5a4SJacob Faibussowitsch {
4558195d93cdSBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
455904cf37c7SBarry Smith   PetscBool   flg;
4560b1d57f15SBarry Smith 
4561195d93cdSBarry Smith   PetscFunctionBegin;
45629566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg));
456328b400f6SJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input");
456421e72a00SBarry Smith   if (Ad) *Ad = a->A;
456521e72a00SBarry Smith   if (Ao) *Ao = a->B;
456621e72a00SBarry Smith   if (colmap) *colmap = a->garray;
45673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4568195d93cdSBarry Smith }
4569a2243be0SBarry Smith 
4570d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
4571d71ae5a4SJacob Faibussowitsch {
4572110bb6e1SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii;
45739b8102ccSHong Zhang   PetscInt    *indx;
4574110bb6e1SHong Zhang   PetscScalar *values;
4575421ddf4dSJunchao Zhang   MatType      rootType;
45769b8102ccSHong Zhang 
45779b8102ccSHong Zhang   PetscFunctionBegin;
45789566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
4579110bb6e1SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4580110bb6e1SHong Zhang     PetscInt *dnz, *onz, sum, bs, cbs;
4581110bb6e1SHong Zhang 
458248a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N));
4583a22543b6SHong Zhang     /* Check sum(n) = N */
4584462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm));
458508401ef6SPierre Jolivet     PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N);
4586a22543b6SHong Zhang 
45879566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm));
45889b8102ccSHong Zhang     rstart -= m;
45899b8102ccSHong Zhang 
4590d0609cedSBarry Smith     MatPreallocateBegin(comm, m, n, dnz, onz);
45919b8102ccSHong Zhang     for (i = 0; i < m; i++) {
45929566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
45939566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz));
45949566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL));
45959b8102ccSHong Zhang     }
45969b8102ccSHong Zhang 
45979566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
45989566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
45999566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
46009566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
46019566063dSJacob Faibussowitsch     PetscCall(MatGetRootType_Private(inmat, &rootType));
46029566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, rootType));
46039566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz));
46049566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz));
4605d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
46069566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
46079b8102ccSHong Zhang   }
46089b8102ccSHong Zhang 
4609110bb6e1SHong Zhang   /* numeric phase */
46109566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
46119b8102ccSHong Zhang   for (i = 0; i < m; i++) {
46129566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46139b8102ccSHong Zhang     Ii = i + rstart;
46149566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
46159566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values));
46169b8102ccSHong Zhang   }
46179566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
46189566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
46193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4620c5d6d63eSBarry Smith }
4621c5d6d63eSBarry Smith 
46222a8381b2SBarry Smith static PetscErrorCode MatMergeSeqsToMPIDestroy(PetscCtxRt data)
4623d71ae5a4SJacob Faibussowitsch {
46242a8381b2SBarry Smith   MatMergeSeqsToMPI *merge = *(MatMergeSeqsToMPI **)data;
462551a7d1a8SHong Zhang 
462651a7d1a8SHong Zhang   PetscFunctionBegin;
46273ba16761SJacob Faibussowitsch   if (!merge) PetscFunctionReturn(PETSC_SUCCESS);
46289566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->id_r));
46299566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_s));
46309566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->len_r));
46319566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bi));
46329566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->bj));
46339566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri[0]));
46349566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_ri));
46359566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj[0]));
46369566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->buf_rj));
46379566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coi));
46389566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->coj));
46399566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge->owners_co));
46409566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&merge->rowmap));
46419566063dSJacob Faibussowitsch   PetscCall(PetscFree(merge));
46423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
464351a7d1a8SHong Zhang }
464451a7d1a8SHong Zhang 
4645c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
4646c6db04a5SJed Brown #include <petscbt.h>
46474ebed01fSBarry Smith 
4648d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat)
4649d71ae5a4SJacob Faibussowitsch {
4650ce94432eSBarry Smith   MPI_Comm           comm;
465155d1abb9SHong Zhang   Mat_SeqAIJ        *a = (Mat_SeqAIJ *)seqmat->data;
4652b1d57f15SBarry Smith   PetscMPIInt        size, rank, taga, *len_s;
46536497c311SBarry Smith   PetscInt           N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m;
46546497c311SBarry Smith   PetscMPIInt        proc, k;
4655b1d57f15SBarry Smith   PetscInt         **buf_ri, **buf_rj;
46566497c311SBarry Smith   PetscInt           anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj;
4657b1d57f15SBarry Smith   PetscInt           nrows, **buf_ri_k, **nextrow, **nextai;
465855d1abb9SHong Zhang   MPI_Request       *s_waits, *r_waits;
465955d1abb9SHong Zhang   MPI_Status        *status;
4660fff043a9SJunchao Zhang   const MatScalar   *aa, *a_a;
4661dd6ea824SBarry Smith   MatScalar        **abuf_r, *ba_i;
4662cc1eb50dSBarry Smith   MatMergeSeqsToMPI *merge;
4663776b82aeSLisandro Dalcin   PetscContainer     container;
466455d1abb9SHong Zhang 
466555d1abb9SHong Zhang   PetscFunctionBegin;
46669566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm));
46679566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0));
46683c2c1871SHong Zhang 
46699566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
46709566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
467155d1abb9SHong Zhang 
46729566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container));
467328b400f6SJacob Faibussowitsch   PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic");
46742a8381b2SBarry Smith   PetscCall(PetscContainerGetPointer(container, &merge));
46759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a));
4676fff043a9SJunchao Zhang   aa = a_a;
4677bf0cc555SLisandro Dalcin 
467855d1abb9SHong Zhang   bi     = merge->bi;
467955d1abb9SHong Zhang   bj     = merge->bj;
468055d1abb9SHong Zhang   buf_ri = merge->buf_ri;
468155d1abb9SHong Zhang   buf_rj = merge->buf_rj;
468255d1abb9SHong Zhang 
46839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
46847a2fc3feSBarry Smith   owners = merge->rowmap->range;
468555d1abb9SHong Zhang   len_s  = merge->len_s;
468655d1abb9SHong Zhang 
468755d1abb9SHong Zhang   /* send and recv matrix values */
46889566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga));
46899566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
469055d1abb9SHong Zhang 
46919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits));
469255d1abb9SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
469355d1abb9SHong Zhang     if (!len_s[proc]) continue;
469455d1abb9SHong Zhang     i = owners[proc];
46956497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
469655d1abb9SHong Zhang     k++;
469755d1abb9SHong Zhang   }
469855d1abb9SHong Zhang 
46999566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
47009566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
47019566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
470255d1abb9SHong Zhang 
47039566063dSJacob Faibussowitsch   PetscCall(PetscFree(s_waits));
47049566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
470555d1abb9SHong Zhang 
470655d1abb9SHong Zhang   /* insert mat values of mpimat */
47079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &ba_i));
47089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
470955d1abb9SHong Zhang 
471055d1abb9SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
471155d1abb9SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
4712f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
471355d1abb9SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4714a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
471555d1abb9SHong Zhang   }
471655d1abb9SHong Zhang 
471755d1abb9SHong Zhang   /* set values of ba */
47187a2fc3feSBarry Smith   m = merge->rowmap->n;
471955d1abb9SHong Zhang   for (i = 0; i < m; i++) {
472055d1abb9SHong Zhang     arow = owners[rank] + i;
472155d1abb9SHong Zhang     bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */
472255d1abb9SHong Zhang     bnzi = bi[i + 1] - bi[i];
47239566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ba_i, bnzi));
472455d1abb9SHong Zhang 
472555d1abb9SHong Zhang     /* add local non-zero vals of this proc's seqmat into ba */
472655d1abb9SHong Zhang     anzi   = ai[arow + 1] - ai[arow];
472755d1abb9SHong Zhang     aj     = a->j + ai[arow];
4728fff043a9SJunchao Zhang     aa     = a_a + ai[arow];
472955d1abb9SHong Zhang     nextaj = 0;
473055d1abb9SHong Zhang     for (j = 0; nextaj < anzi; j++) {
473155d1abb9SHong Zhang       if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
473255d1abb9SHong Zhang         ba_i[j] += aa[nextaj++];
473355d1abb9SHong Zhang       }
473455d1abb9SHong Zhang     }
473555d1abb9SHong Zhang 
473655d1abb9SHong Zhang     /* add received vals into ba */
473755d1abb9SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
473855d1abb9SHong Zhang       /* i-th row */
473955d1abb9SHong Zhang       if (i == *nextrow[k]) {
474055d1abb9SHong Zhang         anzi   = *(nextai[k] + 1) - *nextai[k];
4741f4f49eeaSPierre Jolivet         aj     = buf_rj[k] + *nextai[k];
4742f4f49eeaSPierre Jolivet         aa     = abuf_r[k] + *nextai[k];
474355d1abb9SHong Zhang         nextaj = 0;
474455d1abb9SHong Zhang         for (j = 0; nextaj < anzi; j++) {
474555d1abb9SHong Zhang           if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */
474655d1abb9SHong Zhang             ba_i[j] += aa[nextaj++];
474755d1abb9SHong Zhang           }
474855d1abb9SHong Zhang         }
47499371c9d4SSatish Balay         nextrow[k]++;
47509371c9d4SSatish Balay         nextai[k]++;
475155d1abb9SHong Zhang       }
475255d1abb9SHong Zhang     }
47539566063dSJacob Faibussowitsch     PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES));
475455d1abb9SHong Zhang   }
47559566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a));
47569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY));
47579566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY));
475855d1abb9SHong Zhang 
47599566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
47609566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
47619566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba_i));
47629566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
47639566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0));
47643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
476555d1abb9SHong Zhang }
476638f152feSBarry Smith 
4767d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat)
4768d71ae5a4SJacob Faibussowitsch {
476955a3bba9SHong Zhang   Mat                B_mpi;
4770c2234fe3SHong Zhang   Mat_SeqAIJ        *a = (Mat_SeqAIJ *)seqmat->data;
4771b1d57f15SBarry Smith   PetscMPIInt        size, rank, tagi, tagj, *len_s, *len_si, *len_ri;
4772b1d57f15SBarry Smith   PetscInt         **buf_rj, **buf_ri, **buf_ri_k;
4773d0f46423SBarry Smith   PetscInt           M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j;
47746497c311SBarry Smith   PetscInt           len, *dnz, *onz, bs, cbs;
4775c599c493SJunchao Zhang   PetscInt           k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi;
4776b1d57f15SBarry Smith   PetscInt           nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai;
477755d1abb9SHong Zhang   MPI_Request       *si_waits, *sj_waits, *ri_waits, *rj_waits;
477858cb9c82SHong Zhang   MPI_Status        *status;
47790298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
4780be0fcf8dSHong Zhang   PetscBT            lnkbt;
4781cc1eb50dSBarry Smith   MatMergeSeqsToMPI *merge;
4782776b82aeSLisandro Dalcin   PetscContainer     container;
478302c68681SHong Zhang 
4784e5f2cdd8SHong Zhang   PetscFunctionBegin;
47859566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0));
47863c2c1871SHong Zhang 
478738f152feSBarry Smith   /* make sure it is a PETSc comm */
47889566063dSJacob Faibussowitsch   PetscCall(PetscCommDuplicate(comm, &comm, NULL));
47899566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
47909566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
479155d1abb9SHong Zhang 
47929566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
47939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &status));
4794e5f2cdd8SHong Zhang 
47956abd8857SHong Zhang   /* determine row ownership */
47969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
47979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m));
47989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetSize(merge->rowmap, M));
47999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1));
48009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
48019566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &len_si));
48029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &merge->len_s));
480355d1abb9SHong Zhang 
48047a2fc3feSBarry Smith   m      = merge->rowmap->n;
48057a2fc3feSBarry Smith   owners = merge->rowmap->range;
48066abd8857SHong Zhang 
48076abd8857SHong Zhang   /* determine the number of messages to send, their lengths */
48083e06a4e6SHong Zhang   len_s = merge->len_s;
480951a7d1a8SHong Zhang 
48102257cef7SHong Zhang   len          = 0; /* length of buf_si[] */
4811c2234fe3SHong Zhang   merge->nsend = 0;
48126497c311SBarry Smith   for (PetscMPIInt proc = 0; proc < size; proc++) {
48132257cef7SHong Zhang     len_si[proc] = 0;
48143e06a4e6SHong Zhang     if (proc == rank) {
48156abd8857SHong Zhang       len_s[proc] = 0;
48163e06a4e6SHong Zhang     } else {
48176497c311SBarry Smith       PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc]));
48186497c311SBarry Smith       PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */
48193e06a4e6SHong Zhang     }
48203e06a4e6SHong Zhang     if (len_s[proc]) {
4821c2234fe3SHong Zhang       merge->nsend++;
48222257cef7SHong Zhang       nrows = 0;
48232257cef7SHong Zhang       for (i = owners[proc]; i < owners[proc + 1]; i++) {
48242257cef7SHong Zhang         if (ai[i + 1] > ai[i]) nrows++;
48252257cef7SHong Zhang       }
48266497c311SBarry Smith       PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc]));
48272257cef7SHong Zhang       len += len_si[proc];
4828409913e3SHong Zhang     }
482958cb9c82SHong Zhang   }
4830409913e3SHong Zhang 
48312257cef7SHong Zhang   /* determine the number and length of messages to receive for ij-structure */
48329566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
48339566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
4834671beff6SHong Zhang 
48353e06a4e6SHong Zhang   /* post the Irecv of j-structure */
48369566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
48379566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits));
483802c68681SHong Zhang 
48393e06a4e6SHong Zhang   /* post the Isend of j-structure */
48409566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits));
48413e06a4e6SHong Zhang 
48426497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
4843409913e3SHong Zhang     if (!len_s[proc]) continue;
484402c68681SHong Zhang     i = owners[proc];
48456497c311SBarry Smith     PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k));
484651a7d1a8SHong Zhang     k++;
484751a7d1a8SHong Zhang   }
484851a7d1a8SHong Zhang 
48493e06a4e6SHong Zhang   /* receives and sends of j-structure are complete */
48509566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status));
48519566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status));
485202c68681SHong Zhang 
485302c68681SHong Zhang   /* send and recv i-structure */
48549566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
48559566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits));
485602c68681SHong Zhang 
48579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
48583e06a4e6SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
48596497c311SBarry Smith   for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) {
486002c68681SHong Zhang     if (!len_s[proc]) continue;
48613e06a4e6SHong Zhang     /* form outgoing message for i-structure:
48623e06a4e6SHong Zhang          buf_si[0]:                 nrows to be sent
48633e06a4e6SHong Zhang                [1:nrows]:           row index (global)
48643e06a4e6SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
48653e06a4e6SHong Zhang     */
48662257cef7SHong Zhang     nrows       = len_si[proc] / 2 - 1;
48673e06a4e6SHong Zhang     buf_si_i    = buf_si + nrows + 1;
48683e06a4e6SHong Zhang     buf_si[0]   = nrows;
48693e06a4e6SHong Zhang     buf_si_i[0] = 0;
48703e06a4e6SHong Zhang     nrows       = 0;
48713e06a4e6SHong Zhang     for (i = owners[proc]; i < owners[proc + 1]; i++) {
48723e06a4e6SHong Zhang       anzi = ai[i + 1] - ai[i];
48733e06a4e6SHong Zhang       if (anzi) {
48743e06a4e6SHong Zhang         buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */
48753e06a4e6SHong Zhang         buf_si[nrows + 1]   = i - owners[proc];       /* local row index */
48763e06a4e6SHong Zhang         nrows++;
48773e06a4e6SHong Zhang       }
48783e06a4e6SHong Zhang     }
48796497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k));
488002c68681SHong Zhang     k++;
48812257cef7SHong Zhang     buf_si += len_si[proc];
488202c68681SHong Zhang   }
48832257cef7SHong Zhang 
48849566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status));
48859566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status));
488602c68681SHong Zhang 
48879566063dSJacob Faibussowitsch   PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv));
488848a46eb9SPierre Jolivet   for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i]));
48893e06a4e6SHong Zhang 
48909566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
48919566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
48929566063dSJacob Faibussowitsch   PetscCall(PetscFree(rj_waits));
48939566063dSJacob Faibussowitsch   PetscCall(PetscFree2(si_waits, sj_waits));
48949566063dSJacob Faibussowitsch   PetscCall(PetscFree(ri_waits));
48959566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
48969566063dSJacob Faibussowitsch   PetscCall(PetscFree(status));
489758cb9c82SHong Zhang 
4898bcc1bcd5SHong Zhang   /* compute a local seq matrix in each processor */
489958cb9c82SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
49009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &bi));
490158cb9c82SHong Zhang   bi[0] = 0;
490258cb9c82SHong Zhang 
4903be0fcf8dSHong Zhang   /* create and initialize a linked list */
4904be0fcf8dSHong Zhang   nlnk = N + 1;
49059566063dSJacob Faibussowitsch   PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt));
490658cb9c82SHong Zhang 
4907bcc1bcd5SHong Zhang   /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */
4908bcc1bcd5SHong Zhang   len = ai[owners[rank + 1]] - ai[owners[rank]];
49099566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space));
49102205254eSKarl Rupp 
491158cb9c82SHong Zhang   current_space = free_space;
491258cb9c82SHong Zhang 
4913bcc1bcd5SHong Zhang   /* determine symbolic info for each local row */
49149566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai));
49151d79065fSBarry Smith 
49163e06a4e6SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
49172257cef7SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
49183e06a4e6SHong Zhang     nrows       = *buf_ri_k[k];
49193e06a4e6SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
4920a5b23f4aSJose E. Roman     nextai[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
49213e06a4e6SHong Zhang   }
49222257cef7SHong Zhang 
4923d0609cedSBarry Smith   MatPreallocateBegin(comm, m, n, dnz, onz);
4924bcc1bcd5SHong Zhang   len = 0;
492558cb9c82SHong Zhang   for (i = 0; i < m; i++) {
492658cb9c82SHong Zhang     bnzi = 0;
492758cb9c82SHong Zhang     /* add local non-zero cols of this proc's seqmat into lnk */
492858cb9c82SHong Zhang     arow = owners[rank] + i;
492958cb9c82SHong Zhang     anzi = ai[arow + 1] - ai[arow];
493058cb9c82SHong Zhang     aj   = a->j + ai[arow];
49319566063dSJacob Faibussowitsch     PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
493258cb9c82SHong Zhang     bnzi += nlnk;
493358cb9c82SHong Zhang     /* add received col data into lnk */
493451a7d1a8SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
493555d1abb9SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
49363e06a4e6SHong Zhang         anzi = *(nextai[k] + 1) - *nextai[k];
49373e06a4e6SHong Zhang         aj   = buf_rj[k] + *nextai[k];
49389566063dSJacob Faibussowitsch         PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt));
49393e06a4e6SHong Zhang         bnzi += nlnk;
49409371c9d4SSatish Balay         nextrow[k]++;
49419371c9d4SSatish Balay         nextai[k]++;
49423e06a4e6SHong Zhang       }
494358cb9c82SHong Zhang     }
4944bcc1bcd5SHong Zhang     if (len < bnzi) len = bnzi; /* =max(bnzi) */
494558cb9c82SHong Zhang 
494658cb9c82SHong Zhang     /* if free space is not available, make more free space */
494748a46eb9SPierre Jolivet     if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), &current_space));
494858cb9c82SHong Zhang     /* copy data into free space, then initialize lnk */
49499566063dSJacob Faibussowitsch     PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt));
49509566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz));
4951bcc1bcd5SHong Zhang 
495258cb9c82SHong Zhang     current_space->array += bnzi;
495358cb9c82SHong Zhang     current_space->local_used += bnzi;
495458cb9c82SHong Zhang     current_space->local_remaining -= bnzi;
495558cb9c82SHong Zhang 
495658cb9c82SHong Zhang     bi[i + 1] = bi[i] + bnzi;
495758cb9c82SHong Zhang   }
4958bcc1bcd5SHong Zhang 
49599566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextai));
4960bcc1bcd5SHong Zhang 
496184648c2dSPierre Jolivet   PetscCall(PetscMalloc1(bi[m], &bj));
49629566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
49639566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
4964409913e3SHong Zhang 
4965bcc1bcd5SHong Zhang   /* create symbolic parallel matrix B_mpi */
49669566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs));
49679566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, &B_mpi));
496854b84b50SHong Zhang   if (n == PETSC_DECIDE) {
49699566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N));
497054b84b50SHong Zhang   } else {
49719566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
497254b84b50SHong Zhang   }
49739566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(B_mpi, bs, cbs));
49749566063dSJacob Faibussowitsch   PetscCall(MatSetType(B_mpi, MATMPIAIJ));
49759566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz));
4976d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
49779566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE));
497858cb9c82SHong Zhang 
497990431a8fSHong Zhang   /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */
49806abd8857SHong Zhang   B_mpi->assembled = PETSC_FALSE;
4981affca5deSHong Zhang   merge->bi        = bi;
4982affca5deSHong Zhang   merge->bj        = bj;
498302c68681SHong Zhang   merge->buf_ri    = buf_ri;
498402c68681SHong Zhang   merge->buf_rj    = buf_rj;
49850298fd71SBarry Smith   merge->coi       = NULL;
49860298fd71SBarry Smith   merge->coj       = NULL;
49870298fd71SBarry Smith   merge->owners_co = NULL;
4988affca5deSHong Zhang 
49899566063dSJacob Faibussowitsch   PetscCall(PetscCommDestroy(&comm));
4990bf0cc555SLisandro Dalcin 
4991affca5deSHong Zhang   /* attach the supporting struct to B_mpi for reuse */
49929566063dSJacob Faibussowitsch   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
49939566063dSJacob Faibussowitsch   PetscCall(PetscContainerSetPointer(container, merge));
4994cc1eb50dSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatMergeSeqsToMPIDestroy));
49959566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container));
49969566063dSJacob Faibussowitsch   PetscCall(PetscContainerDestroy(&container));
4997affca5deSHong Zhang   *mpimat = B_mpi;
499838f152feSBarry Smith 
49999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0));
50003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5001e5f2cdd8SHong Zhang }
500225616d81SHong Zhang 
5003cc4c1da9SBarry Smith /*@
500411a5261eSBarry Smith   MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential
5005d4036a1aSHong Zhang   matrices from each processor
5006d4036a1aSHong Zhang 
5007d083f849SBarry Smith   Collective
5008d4036a1aSHong Zhang 
5009d4036a1aSHong Zhang   Input Parameters:
5010d4036a1aSHong Zhang + comm   - the communicators the parallel matrix will live on
5011d4036a1aSHong Zhang . seqmat - the input sequential matrices
501211a5261eSBarry Smith . m      - number of local rows (or `PETSC_DECIDE`)
501311a5261eSBarry Smith . n      - number of local columns (or `PETSC_DECIDE`)
501411a5261eSBarry Smith - scall  - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5015d4036a1aSHong Zhang 
5016d4036a1aSHong Zhang   Output Parameter:
5017d4036a1aSHong Zhang . mpimat - the parallel matrix generated
5018d4036a1aSHong Zhang 
5019d4036a1aSHong Zhang   Level: advanced
5020d4036a1aSHong Zhang 
502111a5261eSBarry Smith   Note:
5022d4036a1aSHong Zhang   The dimensions of the sequential matrix in each processor MUST be the same.
50237da3f0dfSBarry Smith   The input seqmat is included into the container `MatMergeSeqsToMPIDestroy`, and will be
5024b6971eaeSBarry Smith   destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`.
50252ef1f0ffSBarry Smith 
50261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()`
5027d4036a1aSHong Zhang @*/
5028d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat)
5029d71ae5a4SJacob Faibussowitsch {
50307e63b356SHong Zhang   PetscMPIInt size;
503155d1abb9SHong Zhang 
503255d1abb9SHong Zhang   PetscFunctionBegin;
50339566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
50347e63b356SHong Zhang   if (size == 1) {
50359566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
50367e63b356SHong Zhang     if (scall == MAT_INITIAL_MATRIX) {
50379566063dSJacob Faibussowitsch       PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat));
50387e63b356SHong Zhang     } else {
50399566063dSJacob Faibussowitsch       PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN));
50407e63b356SHong Zhang     }
50419566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
50437e63b356SHong Zhang   }
50449566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0));
504548a46eb9SPierre Jolivet   if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat));
50469566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat));
50479566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0));
50483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
504955d1abb9SHong Zhang }
50504ebed01fSBarry Smith 
5051bc08b0f1SBarry Smith /*@
50522920cce0SJacob Faibussowitsch   MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix.
50538a9c020eSBarry Smith 
50548a9c020eSBarry Smith   Not Collective
50558a9c020eSBarry Smith 
50562fe279fdSBarry Smith   Input Parameter:
505720f4b53cSBarry Smith . A - the matrix
50588a9c020eSBarry Smith 
50598a9c020eSBarry Smith   Output Parameter:
50608a9c020eSBarry Smith . A_loc - the local sequential matrix generated
50618a9c020eSBarry Smith 
50628a9c020eSBarry Smith   Level: developer
50638a9c020eSBarry Smith 
50648a9c020eSBarry Smith   Notes:
50652920cce0SJacob Faibussowitsch   The matrix is created by taking `A`'s local rows and putting them into a sequential matrix
50662920cce0SJacob Faibussowitsch   with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and
50672920cce0SJacob Faibussowitsch   `n` is the global column count obtained with `MatGetSize()`
50682920cce0SJacob Faibussowitsch 
506911a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
50708a9c020eSBarry Smith 
50712920cce0SJacob Faibussowitsch   For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count.
50722920cce0SJacob Faibussowitsch 
507311a5261eSBarry Smith   Destroy the matrix with `MatDestroy()`
50748a9c020eSBarry Smith 
50751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()`
50768a9c020eSBarry Smith @*/
5077d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc)
5078d71ae5a4SJacob Faibussowitsch {
50798a9c020eSBarry Smith   PetscBool mpi;
50808a9c020eSBarry Smith 
50818a9c020eSBarry Smith   PetscFunctionBegin;
50828a9c020eSBarry Smith   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi));
50838a9c020eSBarry Smith   if (mpi) {
50848a9c020eSBarry Smith     PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc));
50858a9c020eSBarry Smith   } else {
50868a9c020eSBarry Smith     *A_loc = A;
50878a9c020eSBarry Smith     PetscCall(PetscObjectReference((PetscObject)*A_loc));
50888a9c020eSBarry Smith   }
50893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
50908a9c020eSBarry Smith }
50918a9c020eSBarry Smith 
50928a9c020eSBarry Smith /*@
50932920cce0SJacob Faibussowitsch   MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix.
509425616d81SHong Zhang 
509532fba14fSHong Zhang   Not Collective
509625616d81SHong Zhang 
509725616d81SHong Zhang   Input Parameters:
509825616d81SHong Zhang + A     - the matrix
509911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
510025616d81SHong Zhang 
510125616d81SHong Zhang   Output Parameter:
510225616d81SHong Zhang . A_loc - the local sequential matrix generated
510325616d81SHong Zhang 
510425616d81SHong Zhang   Level: developer
510525616d81SHong Zhang 
510677c65a98SStefano Zampini   Notes:
51072920cce0SJacob Faibussowitsch   The matrix is created by taking all `A`'s local rows and putting them into a sequential
51082920cce0SJacob Faibussowitsch   matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with
51092920cce0SJacob Faibussowitsch   `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`.
51102920cce0SJacob Faibussowitsch 
511111a5261eSBarry Smith   In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix.
51128a9c020eSBarry Smith 
51132920cce0SJacob Faibussowitsch   When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix),
51142920cce0SJacob Faibussowitsch   with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix
51152920cce0SJacob Faibussowitsch   then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc`
51162920cce0SJacob Faibussowitsch   and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix.
511777c65a98SStefano Zampini 
51181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()`
511925616d81SHong Zhang @*/
5120d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc)
5121d71ae5a4SJacob Faibussowitsch {
512201b7ae99SHong Zhang   Mat_MPIAIJ        *mpimat = (Mat_MPIAIJ *)A->data;
5123b78526a6SJose E. Roman   Mat_SeqAIJ        *mat, *a, *b;
5124b78526a6SJose E. Roman   PetscInt          *ai, *aj, *bi, *bj, *cmap = mpimat->garray;
5125ce496241SStefano Zampini   const PetscScalar *aa, *ba, *aav, *bav;
5126ce496241SStefano Zampini   PetscScalar       *ca, *cam;
512777c65a98SStefano Zampini   PetscMPIInt        size;
5128d0f46423SBarry Smith   PetscInt           am = A->rmap->n, i, j, k, cstart = A->cmap->rstart;
51295a7d977cSHong Zhang   PetscInt          *ci, *cj, col, ncols_d, ncols_o, jo;
51308661ff28SBarry Smith   PetscBool          match;
513125616d81SHong Zhang 
513225616d81SHong Zhang   PetscFunctionBegin;
51339566063dSJacob Faibussowitsch   PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match));
513428b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
51359566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
513677c65a98SStefano Zampini   if (size == 1) {
513777c65a98SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
51389566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)mpimat->A));
513977c65a98SStefano Zampini       *A_loc = mpimat->A;
514077c65a98SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
51419566063dSJacob Faibussowitsch       PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN));
514277c65a98SStefano Zampini     }
51433ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
514477c65a98SStefano Zampini   }
514570a9ba44SHong Zhang 
51469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5147f4f49eeaSPierre Jolivet   a  = (Mat_SeqAIJ *)mpimat->A->data;
5148f4f49eeaSPierre Jolivet   b  = (Mat_SeqAIJ *)mpimat->B->data;
51499371c9d4SSatish Balay   ai = a->i;
51509371c9d4SSatish Balay   aj = a->j;
51519371c9d4SSatish Balay   bi = b->i;
51529371c9d4SSatish Balay   bj = b->j;
51539566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav));
51549566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav));
5155ce496241SStefano Zampini   aa = aav;
5156ce496241SStefano Zampini   ba = bav;
515701b7ae99SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
51589566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + am, &ci));
5159dea91ad1SHong Zhang     ci[0] = 0;
5160ad540459SPierre Jolivet     for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]);
51619566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &cj));
51629566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1 + ci[am], &ca));
5163dea91ad1SHong Zhang     k = 0;
516401b7ae99SHong Zhang     for (i = 0; i < am; i++) {
51655a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
51665a7d977cSHong Zhang       ncols_d = ai[i + 1] - ai[i];
516701b7ae99SHong Zhang       /* off-diagonal portion of A */
51685a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
51695a7d977cSHong Zhang         col = cmap[*bj];
51705a7d977cSHong Zhang         if (col >= cstart) break;
51719371c9d4SSatish Balay         cj[k] = col;
51729371c9d4SSatish Balay         bj++;
51735a7d977cSHong Zhang         ca[k++] = *ba++;
51745a7d977cSHong Zhang       }
51755a7d977cSHong Zhang       /* diagonal portion of A */
51765a7d977cSHong Zhang       for (j = 0; j < ncols_d; j++) {
51775a7d977cSHong Zhang         cj[k]   = cstart + *aj++;
51785a7d977cSHong Zhang         ca[k++] = *aa++;
51795a7d977cSHong Zhang       }
51805a7d977cSHong Zhang       /* off-diagonal portion of A */
51815a7d977cSHong Zhang       for (j = jo; j < ncols_o; j++) {
51825a7d977cSHong Zhang         cj[k]   = cmap[*bj++];
51835a7d977cSHong Zhang         ca[k++] = *ba++;
51845a7d977cSHong Zhang       }
518525616d81SHong Zhang     }
5186dea91ad1SHong Zhang     /* put together the new matrix */
51879566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc));
5188dea91ad1SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5189dea91ad1SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
5190dea91ad1SHong Zhang     mat          = (Mat_SeqAIJ *)(*A_loc)->data;
5191e6b907acSBarry Smith     mat->free_a  = PETSC_TRUE;
5192e6b907acSBarry Smith     mat->free_ij = PETSC_TRUE;
5193dea91ad1SHong Zhang     mat->nonew   = 0;
51945a7d977cSHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
51955a7d977cSHong Zhang     mat = (Mat_SeqAIJ *)(*A_loc)->data;
5196fff043a9SJunchao Zhang     ci  = mat->i;
5197fff043a9SJunchao Zhang     cj  = mat->j;
51989566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam));
51995a7d977cSHong Zhang     for (i = 0; i < am; i++) {
52005a7d977cSHong Zhang       /* off-diagonal portion of A */
52015a7d977cSHong Zhang       ncols_o = bi[i + 1] - bi[i];
52025a7d977cSHong Zhang       for (jo = 0; jo < ncols_o; jo++) {
52035a7d977cSHong Zhang         col = cmap[*bj];
52045a7d977cSHong Zhang         if (col >= cstart) break;
52059371c9d4SSatish Balay         *cam++ = *ba++;
52069371c9d4SSatish Balay         bj++;
52075a7d977cSHong Zhang       }
52085a7d977cSHong Zhang       /* diagonal portion of A */
5209ecc9b87dSHong Zhang       ncols_d = ai[i + 1] - ai[i];
5210a77337e4SBarry Smith       for (j = 0; j < ncols_d; j++) *cam++ = *aa++;
52115a7d977cSHong Zhang       /* off-diagonal portion of A */
5212f33d1a9aSHong Zhang       for (j = jo; j < ncols_o; j++) {
52139371c9d4SSatish Balay         *cam++ = *ba++;
52149371c9d4SSatish Balay         bj++;
5215f33d1a9aSHong Zhang       }
52165a7d977cSHong Zhang     }
52179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam));
521898921bdaSJacob Faibussowitsch   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
52199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav));
52209566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav));
52219566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
52223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
522325616d81SHong Zhang }
522425616d81SHong Zhang 
5225ed502f03SStefano Zampini /*@
522611a5261eSBarry Smith   MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with
52274cf0e950SBarry Smith   mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part
5228ed502f03SStefano Zampini 
5229ed502f03SStefano Zampini   Not Collective
5230ed502f03SStefano Zampini 
5231ed502f03SStefano Zampini   Input Parameters:
5232ed502f03SStefano Zampini + A     - the matrix
523311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5234ed502f03SStefano Zampini 
5235d8d19677SJose E. Roman   Output Parameters:
52362ef1f0ffSBarry Smith + glob  - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`)
5237ed502f03SStefano Zampini - A_loc - the local sequential matrix generated
5238ed502f03SStefano Zampini 
5239ed502f03SStefano Zampini   Level: developer
5240ed502f03SStefano Zampini 
524111a5261eSBarry Smith   Note:
52422ef1f0ffSBarry Smith   This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal
52434cf0e950SBarry Smith   part, then those associated with the off-diagonal part (in its local ordering)
5244ed502f03SStefano Zampini 
52451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`
5246ed502f03SStefano Zampini @*/
5247d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc)
5248d71ae5a4SJacob Faibussowitsch {
5249ed502f03SStefano Zampini   Mat             Ao, Ad;
5250ed502f03SStefano Zampini   const PetscInt *cmap;
5251ed502f03SStefano Zampini   PetscMPIInt     size;
5252ed502f03SStefano Zampini   PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *);
5253ed502f03SStefano Zampini 
5254ed502f03SStefano Zampini   PetscFunctionBegin;
52559566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap));
52569566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
5257ed502f03SStefano Zampini   if (size == 1) {
5258ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
52599566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)Ad));
5260ed502f03SStefano Zampini       *A_loc = Ad;
5261ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
52629566063dSJacob Faibussowitsch       PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN));
5263ed502f03SStefano Zampini     }
52649566063dSJacob Faibussowitsch     if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob));
52653ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5266ed502f03SStefano Zampini   }
52679566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f));
52689566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0));
5269ed502f03SStefano Zampini   if (f) {
52709566063dSJacob Faibussowitsch     PetscCall((*f)(A, scall, glob, A_loc));
5271ed502f03SStefano Zampini   } else {
5272ed502f03SStefano Zampini     Mat_SeqAIJ        *a = (Mat_SeqAIJ *)Ad->data;
5273ed502f03SStefano Zampini     Mat_SeqAIJ        *b = (Mat_SeqAIJ *)Ao->data;
5274ed502f03SStefano Zampini     Mat_SeqAIJ        *c;
5275ed502f03SStefano Zampini     PetscInt          *ai = a->i, *aj = a->j;
5276ed502f03SStefano Zampini     PetscInt          *bi = b->i, *bj = b->j;
5277ed502f03SStefano Zampini     PetscInt          *ci, *cj;
5278ed502f03SStefano Zampini     const PetscScalar *aa, *ba;
5279ed502f03SStefano Zampini     PetscScalar       *ca;
5280ed502f03SStefano Zampini     PetscInt           i, j, am, dn, on;
5281ed502f03SStefano Zampini 
52829566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ad, &am, &dn));
52839566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(Ao, NULL, &on));
52849566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ad, &aa));
52859566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(Ao, &ba));
5286ed502f03SStefano Zampini     if (scall == MAT_INITIAL_MATRIX) {
5287ed502f03SStefano Zampini       PetscInt k;
52889566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(1 + am, &ci));
52899566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &cj));
52909566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(ai[am] + bi[am], &ca));
5291ed502f03SStefano Zampini       ci[0] = 0;
5292ed502f03SStefano Zampini       for (i = 0, k = 0; i < am; i++) {
5293ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5294ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5295ed502f03SStefano Zampini         ci[i + 1]              = ci[i] + ncols_o + ncols_d;
5296ed502f03SStefano Zampini         /* diagonal portion of A */
5297ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++, k++) {
5298ed502f03SStefano Zampini           cj[k] = *aj++;
5299ed502f03SStefano Zampini           ca[k] = *aa++;
5300ed502f03SStefano Zampini         }
5301ed502f03SStefano Zampini         /* off-diagonal portion of A */
5302ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++, k++) {
5303ed502f03SStefano Zampini           cj[k] = dn + *bj++;
5304ed502f03SStefano Zampini           ca[k] = *ba++;
5305ed502f03SStefano Zampini         }
5306ed502f03SStefano Zampini       }
5307ed502f03SStefano Zampini       /* put together the new matrix */
53089566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc));
5309ed502f03SStefano Zampini       /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5310ed502f03SStefano Zampini       /* Since these are PETSc arrays, change flags to free them as necessary. */
5311ed502f03SStefano Zampini       c          = (Mat_SeqAIJ *)(*A_loc)->data;
5312ed502f03SStefano Zampini       c->free_a  = PETSC_TRUE;
5313ed502f03SStefano Zampini       c->free_ij = PETSC_TRUE;
5314ed502f03SStefano Zampini       c->nonew   = 0;
53159566063dSJacob Faibussowitsch       PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name));
5316ed502f03SStefano Zampini     } else if (scall == MAT_REUSE_MATRIX) {
53179566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca));
5318ed502f03SStefano Zampini       for (i = 0; i < am; i++) {
5319ed502f03SStefano Zampini         const PetscInt ncols_d = ai[i + 1] - ai[i];
5320ed502f03SStefano Zampini         const PetscInt ncols_o = bi[i + 1] - bi[i];
5321ed502f03SStefano Zampini         /* diagonal portion of A */
5322ed502f03SStefano Zampini         for (j = 0; j < ncols_d; j++) *ca++ = *aa++;
5323ed502f03SStefano Zampini         /* off-diagonal portion of A */
5324ed502f03SStefano Zampini         for (j = 0; j < ncols_o; j++) *ca++ = *ba++;
5325ed502f03SStefano Zampini       }
53269566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca));
532798921bdaSJacob Faibussowitsch     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall);
53289566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa));
53299566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa));
5330ed502f03SStefano Zampini     if (glob) {
5331ed502f03SStefano Zampini       PetscInt cst, *gidx;
5332ed502f03SStefano Zampini 
53339566063dSJacob Faibussowitsch       PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL));
53349566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(dn + on, &gidx));
5335ed502f03SStefano Zampini       for (i = 0; i < dn; i++) gidx[i] = cst + i;
5336ed502f03SStefano Zampini       for (i = 0; i < on; i++) gidx[i + dn] = cmap[i];
53379566063dSJacob Faibussowitsch       PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob));
5338ed502f03SStefano Zampini     }
5339ed502f03SStefano Zampini   }
53409566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0));
53413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5342ed502f03SStefano Zampini }
5343ed502f03SStefano Zampini 
534432fba14fSHong Zhang /*@C
534511a5261eSBarry Smith   MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns
534632fba14fSHong Zhang 
534732fba14fSHong Zhang   Not Collective
534832fba14fSHong Zhang 
534932fba14fSHong Zhang   Input Parameters:
535032fba14fSHong Zhang + A     - the matrix
535111a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
535220f4b53cSBarry Smith . row   - index set of rows to extract (or `NULL`)
535320f4b53cSBarry Smith - col   - index set of columns to extract (or `NULL`)
535432fba14fSHong Zhang 
535532fba14fSHong Zhang   Output Parameter:
535632fba14fSHong Zhang . A_loc - the local sequential matrix generated
535732fba14fSHong Zhang 
535832fba14fSHong Zhang   Level: developer
535932fba14fSHong Zhang 
53601cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`
536132fba14fSHong Zhang @*/
5362d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc)
5363d71ae5a4SJacob Faibussowitsch {
536432fba14fSHong Zhang   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
536532fba14fSHong Zhang   PetscInt    i, start, end, ncols, nzA, nzB, *cmap, imark, *idx;
536632fba14fSHong Zhang   IS          isrowa, iscola;
536732fba14fSHong Zhang   Mat        *aloc;
53684a2b5492SBarry Smith   PetscBool   match;
536932fba14fSHong Zhang 
537032fba14fSHong Zhang   PetscFunctionBegin;
53719566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match));
537228b400f6SJacob Faibussowitsch   PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input");
53739566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0));
537432fba14fSHong Zhang   if (!row) {
53759371c9d4SSatish Balay     start = A->rmap->rstart;
53769371c9d4SSatish Balay     end   = A->rmap->rend;
53779566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa));
537832fba14fSHong Zhang   } else {
537932fba14fSHong Zhang     isrowa = *row;
538032fba14fSHong Zhang   }
538132fba14fSHong Zhang   if (!col) {
5382d0f46423SBarry Smith     start = A->cmap->rstart;
538332fba14fSHong Zhang     cmap  = a->garray;
5384d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5385d0f46423SBarry Smith     nzB   = a->B->cmap->n;
53869566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
538732fba14fSHong Zhang     ncols = 0;
538832fba14fSHong Zhang     for (i = 0; i < nzB; i++) {
538932fba14fSHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
539032fba14fSHong Zhang       else break;
539132fba14fSHong Zhang     }
539232fba14fSHong Zhang     imark = i;
539332fba14fSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;
539432fba14fSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i];
53959566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola));
539632fba14fSHong Zhang   } else {
539732fba14fSHong Zhang     iscola = *col;
539832fba14fSHong Zhang   }
539932fba14fSHong Zhang   if (scall != MAT_INITIAL_MATRIX) {
54009566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &aloc));
540132fba14fSHong Zhang     aloc[0] = *A_loc;
540232fba14fSHong Zhang   }
54039566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc));
5404109e0772SStefano Zampini   if (!col) { /* attach global id of condensed columns */
54059566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola));
5406109e0772SStefano Zampini   }
540732fba14fSHong Zhang   *A_loc = aloc[0];
54089566063dSJacob Faibussowitsch   PetscCall(PetscFree(aloc));
540948a46eb9SPierre Jolivet   if (!row) PetscCall(ISDestroy(&isrowa));
541048a46eb9SPierre Jolivet   if (!col) PetscCall(ISDestroy(&iscola));
54119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0));
54123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
541332fba14fSHong Zhang }
541432fba14fSHong Zhang 
54155c65b9ecSFande Kong /*
54165c65b9ecSFande Kong  * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched.
54175c65b9ecSFande Kong  * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based
54185c65b9ecSFande Kong  * on a global size.
54195c65b9ecSFande Kong  * */
5420ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth)
5421d71ae5a4SJacob Faibussowitsch {
54225c65b9ecSFande Kong   Mat_MPIAIJ            *p  = (Mat_MPIAIJ *)P->data;
5423f4f49eeaSPierre Jolivet   Mat_SeqAIJ            *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth;
5424131c27b5Sprj-   PetscInt               plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol;
5425131c27b5Sprj-   PetscMPIInt            owner;
54265c65b9ecSFande Kong   PetscSFNode           *iremote, *oiremote;
54275c65b9ecSFande Kong   const PetscInt        *lrowindices;
54285c65b9ecSFande Kong   PetscSF                sf, osf;
54295c65b9ecSFande Kong   PetscInt               pcstart, *roffsets, *loffsets, *pnnz, j;
54305c65b9ecSFande Kong   PetscInt               ontotalcols, dntotalcols, ntotalcols, nout;
54315c65b9ecSFande Kong   MPI_Comm               comm;
54325c65b9ecSFande Kong   ISLocalToGlobalMapping mapping;
5433fff043a9SJunchao Zhang   const PetscScalar     *pd_a, *po_a;
54345c65b9ecSFande Kong 
54355c65b9ecSFande Kong   PetscFunctionBegin;
54369566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)P, &comm));
54375c65b9ecSFande Kong   /* plocalsize is the number of roots
54385c65b9ecSFande Kong    * nrows is the number of leaves
54395c65b9ecSFande Kong    * */
54409566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(P, &plocalsize, NULL));
54419566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(rows, &nrows));
54429566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &iremote));
54439566063dSJacob Faibussowitsch   PetscCall(ISGetIndices(rows, &lrowindices));
54445c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
54455c65b9ecSFande Kong     /* Find a remote index and an owner for a row
54465c65b9ecSFande Kong      * The row could be local or remote
54475c65b9ecSFande Kong      * */
544834bcad68SFande Kong     owner = 0;
544934bcad68SFande Kong     lidx  = 0;
54509566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx));
54515c65b9ecSFande Kong     iremote[i].index = lidx;
54525c65b9ecSFande Kong     iremote[i].rank  = owner;
54535c65b9ecSFande Kong   }
54545c65b9ecSFande Kong   /* Create SF to communicate how many nonzero columns for each row */
54559566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
5456f332b1cbSPierre Jolivet   /* SF will figure out the number of nonzero columns for each row, and their
54575c65b9ecSFande Kong    * offsets
54585c65b9ecSFande Kong    * */
54599566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
54609566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
54619566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
5462bc8e477aSFande Kong 
54639566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets));
54649566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * plocalsize, &nrcols));
54659566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(nrows, &pnnz));
54665c65b9ecSFande Kong   roffsets[0] = 0;
54675c65b9ecSFande Kong   roffsets[1] = 0;
54685c65b9ecSFande Kong   for (i = 0; i < plocalsize; i++) {
54694cf0e950SBarry Smith     /* diagonal */
54705c65b9ecSFande Kong     nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i];
54714cf0e950SBarry Smith     /* off-diagonal */
54725c65b9ecSFande Kong     nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i];
54735c65b9ecSFande Kong     /* compute offsets so that we relative location for each row */
54745c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0];
54755c65b9ecSFande Kong     roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1];
54765c65b9ecSFande Kong   }
54779566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &nlcols));
54789566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(2 * nrows, &loffsets));
54795c65b9ecSFande Kong   /* 'r' means root, and 'l' means leaf */
54809566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
54819566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
54829566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE));
54839566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE));
54849566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
54859566063dSJacob Faibussowitsch   PetscCall(PetscFree(roffsets));
54869566063dSJacob Faibussowitsch   PetscCall(PetscFree(nrcols));
54875c65b9ecSFande Kong   dntotalcols = 0;
54885c65b9ecSFande Kong   ontotalcols = 0;
5489bc8e477aSFande Kong   ncol        = 0;
54905c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
54915c65b9ecSFande Kong     pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1];
5492bc8e477aSFande Kong     ncol    = PetscMax(pnnz[i], ncol);
54934cf0e950SBarry Smith     /* diagonal */
54945c65b9ecSFande Kong     dntotalcols += nlcols[i * 2 + 0];
54954cf0e950SBarry Smith     /* off-diagonal */
54965c65b9ecSFande Kong     ontotalcols += nlcols[i * 2 + 1];
54975c65b9ecSFande Kong   }
54985c65b9ecSFande Kong   /* We do not need to figure the right number of columns
54995c65b9ecSFande Kong    * since all the calculations will be done by going through the raw data
55005c65b9ecSFande Kong    * */
55019566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth));
55029566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*P_oth));
55039566063dSJacob Faibussowitsch   PetscCall(PetscFree(pnnz));
55045c65b9ecSFande Kong   p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
55054cf0e950SBarry Smith   /* diagonal */
55069566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &iremote));
55074cf0e950SBarry Smith   /* off-diagonal */
55089566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oiremote));
55094cf0e950SBarry Smith   /* diagonal */
55109566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(dntotalcols, &ilocal));
55114cf0e950SBarry Smith   /* off-diagonal */
55129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ontotalcols, &oilocal));
55135c65b9ecSFande Kong   dntotalcols = 0;
55145c65b9ecSFande Kong   ontotalcols = 0;
55155c65b9ecSFande Kong   ntotalcols  = 0;
55165c65b9ecSFande Kong   for (i = 0; i < nrows; i++) {
551734bcad68SFande Kong     owner = 0;
55189566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL));
55195c65b9ecSFande Kong     /* Set iremote for diag matrix */
55205c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 0]; j++) {
55215c65b9ecSFande Kong       iremote[dntotalcols].index = loffsets[i * 2 + 0] + j;
55225c65b9ecSFande Kong       iremote[dntotalcols].rank  = owner;
55235c65b9ecSFande Kong       /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */
55245c65b9ecSFande Kong       ilocal[dntotalcols++] = ntotalcols++;
55255c65b9ecSFande Kong     }
55264cf0e950SBarry Smith     /* off-diagonal */
55275c65b9ecSFande Kong     for (j = 0; j < nlcols[i * 2 + 1]; j++) {
55285c65b9ecSFande Kong       oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j;
55295c65b9ecSFande Kong       oiremote[ontotalcols].rank  = owner;
55305c65b9ecSFande Kong       oilocal[ontotalcols++]      = ntotalcols++;
55315c65b9ecSFande Kong     }
55325c65b9ecSFande Kong   }
55339566063dSJacob Faibussowitsch   PetscCall(ISRestoreIndices(rows, &lrowindices));
55349566063dSJacob Faibussowitsch   PetscCall(PetscFree(loffsets));
55359566063dSJacob Faibussowitsch   PetscCall(PetscFree(nlcols));
55369566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf));
55375c65b9ecSFande Kong   /* P serves as roots and P_oth is leaves
55385c65b9ecSFande Kong    * Diag matrix
55395c65b9ecSFande Kong    * */
55409566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
55419566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf));
55429566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
55435c65b9ecSFande Kong 
55449566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &osf));
55454cf0e950SBarry Smith   /* off-diagonal */
55469566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER));
55479566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(osf));
55489566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(osf));
55499566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
55509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
55514cf0e950SBarry Smith   /* operate on the matrix internal data to save memory */
55529566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
55539566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
55549566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL));
55555c65b9ecSFande Kong   /* Convert to global indices for diag matrix */
55565c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart;
55579566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
55585c65b9ecSFande Kong   /* We want P_oth store global indices */
55599566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping));
55605c65b9ecSFande Kong   /* Use memory scalable approach */
55619566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH));
55629566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j));
55639566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
55649566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE));
55655c65b9ecSFande Kong   /* Convert back to local indices */
55665c65b9ecSFande Kong   for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart;
55679566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE));
55685c65b9ecSFande Kong   nout = 0;
55699566063dSJacob Faibussowitsch   PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j));
557008401ef6SPierre Jolivet   PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout);
55719566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&mapping));
55725c65b9ecSFande Kong   /* Exchange values */
55739566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
55749566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
55759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
55769566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
55775c65b9ecSFande Kong   /* Stop PETSc from shrinking memory */
55785c65b9ecSFande Kong   for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i];
55799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY));
55809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY));
55815c65b9ecSFande Kong   /* Attach PetscSF objects to P_oth so that we can reuse it later */
55829566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf));
55839566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf));
55849566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
55859566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&osf));
55863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
55875c65b9ecSFande Kong }
55885c65b9ecSFande Kong 
55895c65b9ecSFande Kong /*
55905c65b9ecSFande Kong  * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A
55915c65b9ecSFande Kong  * This supports MPIAIJ and MAIJ
55925c65b9ecSFande Kong  * */
5593d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth)
5594d71ae5a4SJacob Faibussowitsch {
55955c65b9ecSFande Kong   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data;
5596bc8e477aSFande Kong   Mat_SeqAIJ *p_oth;
5597bc8e477aSFande Kong   IS          rows, map;
5598bc8e477aSFande Kong   PetscHMapI  hamp;
5599bc8e477aSFande Kong   PetscInt    i, htsize, *rowindices, off, *mapping, key, count;
56005c65b9ecSFande Kong   MPI_Comm    comm;
56015c65b9ecSFande Kong   PetscSF     sf, osf;
5602bc8e477aSFande Kong   PetscBool   has;
56035c65b9ecSFande Kong 
56045c65b9ecSFande Kong   PetscFunctionBegin;
56059566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
56069566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0));
56075c65b9ecSFande Kong   /* If it is the first time, create an index set of off-diag nonzero columns of A,
56085c65b9ecSFande Kong    *  and then create a submatrix (that often is an overlapping matrix)
56095c65b9ecSFande Kong    * */
56105c65b9ecSFande Kong   if (reuse == MAT_INITIAL_MATRIX) {
56115c65b9ecSFande Kong     /* Use a hash table to figure out unique keys */
5612eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp));
56139566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(a->B->cmap->n, &mapping));
5614bc8e477aSFande Kong     count = 0;
5615bc8e477aSFande Kong     /* Assume that  a->g is sorted, otherwise the following does not make sense */
5616bc8e477aSFande Kong     for (i = 0; i < a->B->cmap->n; i++) {
5617bc8e477aSFande Kong       key = a->garray[i] / dof;
56189566063dSJacob Faibussowitsch       PetscCall(PetscHMapIHas(hamp, key, &has));
5619bc8e477aSFande Kong       if (!has) {
5620bc8e477aSFande Kong         mapping[i] = count;
56219566063dSJacob Faibussowitsch         PetscCall(PetscHMapISet(hamp, key, count++));
5622bc8e477aSFande Kong       } else {
5623bc8e477aSFande Kong         /* Current 'i' has the same value the previous step */
5624bc8e477aSFande Kong         mapping[i] = count - 1;
56255c65b9ecSFande Kong       }
5626bc8e477aSFande Kong     }
56279566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map));
56289566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetSize(hamp, &htsize));
5629eec179cfSJacob Faibussowitsch     PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count);
56309566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(htsize, &rowindices));
56315c65b9ecSFande Kong     off = 0;
56329566063dSJacob Faibussowitsch     PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices));
56339566063dSJacob Faibussowitsch     PetscCall(PetscHMapIDestroy(&hamp));
56349566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(htsize, rowindices));
56359566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows));
56365c65b9ecSFande Kong     /* In case, the matrix was already created but users want to recreate the matrix */
56379566063dSJacob Faibussowitsch     PetscCall(MatDestroy(P_oth));
56389566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth));
56399566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map));
56409566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&map));
56419566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&rows));
56425c65b9ecSFande Kong   } else if (reuse == MAT_REUSE_MATRIX) {
56435c65b9ecSFande Kong     /* If matrix was already created, we simply update values using SF objects
564435cb6cd3SPierre Jolivet      * that as attached to the matrix earlier.
5645fff043a9SJunchao Zhang      */
5646fff043a9SJunchao Zhang     const PetscScalar *pd_a, *po_a;
5647fff043a9SJunchao Zhang 
56489566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf));
56499566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf));
565008401ef6SPierre Jolivet     PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet");
56515c65b9ecSFande Kong     p_oth = (Mat_SeqAIJ *)(*P_oth)->data;
56525c65b9ecSFande Kong     /* Update values in place */
56539566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a));
56549566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a));
56559566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56569566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56579566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE));
56589566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE));
56599566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a));
56609566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a));
56616718818eSStefano Zampini   } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type");
56629566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0));
56633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
56645c65b9ecSFande Kong }
56655c65b9ecSFande Kong 
566625616d81SHong Zhang /*@C
566720f4b53cSBarry Smith   MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A`
566825616d81SHong Zhang 
5669c3339decSBarry Smith   Collective
567025616d81SHong Zhang 
567125616d81SHong Zhang   Input Parameters:
567211a5261eSBarry Smith + A     - the first matrix in `MATMPIAIJ` format
567311a5261eSBarry Smith . B     - the second matrix in `MATMPIAIJ` format
567411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
567525616d81SHong Zhang 
5676f1a722f8SMatthew G. Knepley   Output Parameters:
567727430b45SBarry Smith + rowb  - On input index sets of rows of B to extract (or `NULL`), modified on output
567827430b45SBarry Smith . colb  - On input index sets of columns of B to extract (or `NULL`), modified on output
5679f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated
568025616d81SHong Zhang 
568125616d81SHong Zhang   Level: developer
568225616d81SHong Zhang 
568320f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse`
568425616d81SHong Zhang @*/
5685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq)
5686d71ae5a4SJacob Faibussowitsch {
5687899cda47SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data;
5688b1d57f15SBarry Smith   PetscInt   *idx, i, start, ncols, nzA, nzB, *cmap, imark;
568925616d81SHong Zhang   IS          isrowb, iscolb;
56900298fd71SBarry Smith   Mat        *bseq = NULL;
569125616d81SHong Zhang 
569225616d81SHong Zhang   PetscFunctionBegin;
569320f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
569420f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
56959566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0));
569625616d81SHong Zhang 
569725616d81SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5698d0f46423SBarry Smith     start = A->cmap->rstart;
569925616d81SHong Zhang     cmap  = a->garray;
5700d0f46423SBarry Smith     nzA   = a->A->cmap->n;
5701d0f46423SBarry Smith     nzB   = a->B->cmap->n;
57029566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nzA + nzB, &idx));
570325616d81SHong Zhang     ncols = 0;
57040390132cSHong Zhang     for (i = 0; i < nzB; i++) { /* row < local row index */
570525616d81SHong Zhang       if (cmap[i] < start) idx[ncols++] = cmap[i];
570625616d81SHong Zhang       else break;
570725616d81SHong Zhang     }
570825616d81SHong Zhang     imark = i;
57090390132cSHong Zhang     for (i = 0; i < nzA; i++) idx[ncols++] = start + i;   /* local rows */
57100390132cSHong Zhang     for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */
57119566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb));
57129566063dSJacob Faibussowitsch     PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb));
571325616d81SHong Zhang   } else {
571408401ef6SPierre Jolivet     PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX");
57159371c9d4SSatish Balay     isrowb = *rowb;
57169371c9d4SSatish Balay     iscolb = *colb;
57179566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(1, &bseq));
571825616d81SHong Zhang     bseq[0] = *B_seq;
571925616d81SHong Zhang   }
57209566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq));
572125616d81SHong Zhang   *B_seq = bseq[0];
57229566063dSJacob Faibussowitsch   PetscCall(PetscFree(bseq));
572325616d81SHong Zhang   if (!rowb) {
57249566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&isrowb));
572525616d81SHong Zhang   } else {
572625616d81SHong Zhang     *rowb = isrowb;
572725616d81SHong Zhang   }
572825616d81SHong Zhang   if (!colb) {
57299566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscolb));
573025616d81SHong Zhang   } else {
573125616d81SHong Zhang     *colb = iscolb;
573225616d81SHong Zhang   }
57339566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0));
57343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
573525616d81SHong Zhang }
5736429d309bSHong Zhang 
5737f8487c73SHong Zhang /*
573827430b45SBarry Smith     MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns
573901b7ae99SHong Zhang     of the OFF-DIAGONAL portion of local A
5740429d309bSHong Zhang 
5741c3339decSBarry Smith     Collective
5742429d309bSHong Zhang 
5743429d309bSHong Zhang    Input Parameters:
574427430b45SBarry Smith +    A,B - the matrices in `MATMPIAIJ` format
574527430b45SBarry Smith -    scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX`
5746429d309bSHong Zhang 
5747429d309bSHong Zhang    Output Parameter:
57480298fd71SBarry Smith +    startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL)
57490298fd71SBarry Smith .    startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL)
57500298fd71SBarry Smith .    bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL)
5751598bc09dSHong Zhang -    B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N
5752429d309bSHong Zhang 
575311a5261eSBarry Smith     Developer Note:
575411a5261eSBarry Smith     This directly accesses information inside the VecScatter associated with the matrix-vector product
57556eb45d04SBarry Smith      for this matrix. This is not desirable..
57566eb45d04SBarry Smith 
5757429d309bSHong Zhang     Level: developer
5758429d309bSHong Zhang 
5759f8487c73SHong Zhang */
57606497c311SBarry Smith 
5761d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth)
5762d71ae5a4SJacob Faibussowitsch {
5763899cda47SBarry Smith   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data;
57644b8d542aSHong Zhang   VecScatter         ctx;
5765ce94432eSBarry Smith   MPI_Comm           comm;
57663515ee7fSJunchao Zhang   const PetscMPIInt *rprocs, *sprocs;
57676497c311SBarry Smith   PetscMPIInt        nrecvs, nsends;
57683515ee7fSJunchao Zhang   const PetscInt    *srow, *rstarts, *sstarts;
5769277f51e8SBarry Smith   PetscInt          *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs;
57706497c311SBarry Smith   PetscInt           i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len;
5771277f51e8SBarry Smith   PetscScalar       *b_otha, *bufa, *bufA, *vals = NULL;
5772ddea5d60SJunchao Zhang   MPI_Request       *reqs = NULL, *rwaits = NULL, *swaits = NULL;
5773ddea5d60SJunchao Zhang   PetscMPIInt        size, tag, rank, nreqs;
5774429d309bSHong Zhang 
5775429d309bSHong Zhang   PetscFunctionBegin;
57769566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
57779566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
5778a7c7454dSHong Zhang 
577920f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
578020f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
57819566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0));
57829566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5783a6b2eed2SHong Zhang 
5784ec07b8f8SHong Zhang   if (size == 1) {
5785ec07b8f8SHong Zhang     startsj_s = NULL;
5786ec07b8f8SHong Zhang     bufa_ptr  = NULL;
578752f7967eSHong Zhang     *B_oth    = NULL;
57883ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
5789ec07b8f8SHong Zhang   }
5790ec07b8f8SHong Zhang 
5791fa83eaafSHong Zhang   ctx = a->Mvctx;
57924b8d542aSHong Zhang   tag = ((PetscObject)ctx)->tag;
57934b8d542aSHong Zhang 
57949566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs));
57953515ee7fSJunchao Zhang   /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */
57969566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs));
57979566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs));
57989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nreqs, &reqs));
5799ddea5d60SJunchao Zhang   rwaits = reqs;
58008e3a54c0SPierre Jolivet   swaits = PetscSafePointerPlusOffset(reqs, nrecvs);
5801429d309bSHong Zhang 
5802b7f45c76SHong Zhang   if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX;
5803429d309bSHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5804a6b2eed2SHong Zhang     /* i-array */
5805a6b2eed2SHong Zhang     /*  post receives */
58069566063dSJacob Faibussowitsch     if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */
5807a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
580874268593SBarry Smith       rowlen = rvalues + rstarts[i] * rbs;
5809e42f35eeSHong Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */
58106497c311SBarry Smith       PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5811429d309bSHong Zhang     }
5812a6b2eed2SHong Zhang 
5813a6b2eed2SHong Zhang     /* pack the outgoing message */
58149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj));
58152205254eSKarl Rupp 
58162205254eSKarl Rupp     sstartsj[0] = 0;
58172205254eSKarl Rupp     rstartsj[0] = 0;
5818a6b2eed2SHong Zhang     len         = 0; /* total length of j or a array to be sent */
58193515ee7fSJunchao Zhang     if (nsends) {
58203515ee7fSJunchao Zhang       k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */
58219566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues));
58223515ee7fSJunchao Zhang     }
5823a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
58243515ee7fSJunchao Zhang       rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs;
5825e42f35eeSHong Zhang       nrows  = sstarts[i + 1] - sstarts[i]; /* num of block rows */
582687025532SHong Zhang       for (j = 0; j < nrows; j++) {
5827d0f46423SBarry Smith         row = srow[k] + B->rmap->range[rank]; /* global row idx */
5828e42f35eeSHong Zhang         for (l = 0; l < sbs; l++) {
58299566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */
58302205254eSKarl Rupp 
5831e42f35eeSHong Zhang           rowlen[j * sbs + l] = ncols;
58322205254eSKarl Rupp 
5833e42f35eeSHong Zhang           len += ncols;
58349566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL));
5835e42f35eeSHong Zhang         }
5836a6b2eed2SHong Zhang         k++;
5837429d309bSHong Zhang       }
58386497c311SBarry Smith       PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i));
58392205254eSKarl Rupp 
5840dea91ad1SHong Zhang       sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */
5841429d309bSHong Zhang     }
584287025532SHong Zhang     /* recvs and sends of i-array are completed */
58439566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
58449566063dSJacob Faibussowitsch     PetscCall(PetscFree(svalues));
5845e42f35eeSHong Zhang 
5846a6b2eed2SHong Zhang     /* allocate buffers for sending j and a arrays */
584784648c2dSPierre Jolivet     PetscCall(PetscMalloc1(len, &bufj));
584884648c2dSPierre Jolivet     PetscCall(PetscMalloc1(len, &bufa));
5849a6b2eed2SHong Zhang 
585087025532SHong Zhang     /* create i-array of B_oth */
585184648c2dSPierre Jolivet     PetscCall(PetscMalloc1(aBn + 1, &b_othi));
58522205254eSKarl Rupp 
585387025532SHong Zhang     b_othi[0] = 0;
5854a6b2eed2SHong Zhang     len       = 0; /* total length of j or a array to be received */
5855a6b2eed2SHong Zhang     k         = 0;
5856a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
58573515ee7fSJunchao Zhang       rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs;
58583515ee7fSJunchao Zhang       nrows  = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */
585987025532SHong Zhang       for (j = 0; j < nrows; j++) {
586087025532SHong Zhang         b_othi[k + 1] = b_othi[k] + rowlen[j];
58619566063dSJacob Faibussowitsch         PetscCall(PetscIntSumError(rowlen[j], len, &len));
5862f91af8c7SBarry Smith         k++;
5863a6b2eed2SHong Zhang       }
5864dea91ad1SHong Zhang       rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */
5865a6b2eed2SHong Zhang     }
58669566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvalues));
5867a6b2eed2SHong Zhang 
58686aad120cSJose E. Roman     /* allocate space for j and a arrays of B_oth */
586984648c2dSPierre Jolivet     PetscCall(PetscMalloc1(b_othi[aBn], &b_othj));
587084648c2dSPierre Jolivet     PetscCall(PetscMalloc1(b_othi[aBn], &b_otha));
5871a6b2eed2SHong Zhang 
587287025532SHong Zhang     /* j-array */
5873a6b2eed2SHong Zhang     /*  post receives of j-array */
5874a6b2eed2SHong Zhang     for (i = 0; i < nrecvs; i++) {
587587025532SHong Zhang       nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
587684648c2dSPierre Jolivet       PetscCallMPI(MPIU_Irecv(PetscSafePointerPlusOffset(b_othj, rstartsj[i]), nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i));
5877a6b2eed2SHong Zhang     }
5878e42f35eeSHong Zhang 
5879e42f35eeSHong Zhang     /* pack the outgoing message j-array */
58803515ee7fSJunchao Zhang     if (nsends) k = sstarts[0];
5881a6b2eed2SHong Zhang     for (i = 0; i < nsends; i++) {
5882e42f35eeSHong Zhang       nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
588384648c2dSPierre Jolivet       bufJ  = PetscSafePointerPlusOffset(bufj, sstartsj[i]);
588487025532SHong Zhang       for (j = 0; j < nrows; j++) {
5885d0f46423SBarry Smith         row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5886e42f35eeSHong Zhang         for (ll = 0; ll < sbs; ll++) {
58879566063dSJacob Faibussowitsch           PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5888ad540459SPierre Jolivet           for (l = 0; l < ncols; l++) *bufJ++ = cols[l];
58899566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL));
5890e42f35eeSHong Zhang         }
589187025532SHong Zhang       }
589284648c2dSPierre Jolivet       PetscCallMPI(MPIU_Isend(PetscSafePointerPlusOffset(bufj, sstartsj[i]), sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i));
589387025532SHong Zhang     }
589487025532SHong Zhang 
589587025532SHong Zhang     /* recvs and sends of j-array are completed */
58969566063dSJacob Faibussowitsch     if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
589787025532SHong Zhang   } else if (scall == MAT_REUSE_MATRIX) {
5898b7f45c76SHong Zhang     sstartsj = *startsj_s;
58991d79065fSBarry Smith     rstartsj = *startsj_r;
590087025532SHong Zhang     bufa     = *bufa_ptr;
59019566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha));
5902ddea5d60SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container");
590387025532SHong Zhang 
590487025532SHong Zhang   /* a-array */
590587025532SHong Zhang   /*  post receives of a-array */
590687025532SHong Zhang   for (i = 0; i < nrecvs; i++) {
590787025532SHong Zhang     nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */
590884648c2dSPierre Jolivet     PetscCallMPI(MPIU_Irecv(PetscSafePointerPlusOffset(b_otha, rstartsj[i]), nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i));
590987025532SHong Zhang   }
5910e42f35eeSHong Zhang 
5911e42f35eeSHong Zhang   /* pack the outgoing message a-array */
59123515ee7fSJunchao Zhang   if (nsends) k = sstarts[0];
591387025532SHong Zhang   for (i = 0; i < nsends; i++) {
5914e42f35eeSHong Zhang     nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */
591584648c2dSPierre Jolivet     bufA  = PetscSafePointerPlusOffset(bufa, sstartsj[i]);
591687025532SHong Zhang     for (j = 0; j < nrows; j++) {
5917d0f46423SBarry Smith       row = srow[k++] + B->rmap->range[rank]; /* global row idx */
5918e42f35eeSHong Zhang       for (ll = 0; ll < sbs; ll++) {
59199566063dSJacob Faibussowitsch         PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5920ad540459SPierre Jolivet         for (l = 0; l < ncols; l++) *bufA++ = vals[l];
59219566063dSJacob Faibussowitsch         PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals));
5922e42f35eeSHong Zhang       }
5923a6b2eed2SHong Zhang     }
592484648c2dSPierre Jolivet     PetscCallMPI(MPIU_Isend(PetscSafePointerPlusOffset(bufa, sstartsj[i]), sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i));
5925a6b2eed2SHong Zhang   }
592687025532SHong Zhang   /* recvs and sends of a-array are completed */
59279566063dSJacob Faibussowitsch   if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE));
59289566063dSJacob Faibussowitsch   PetscCall(PetscFree(reqs));
5929a6b2eed2SHong Zhang 
593087025532SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
5931dd460d27SBarry Smith     Mat_SeqAIJ *b_oth;
5932dd460d27SBarry Smith 
5933a6b2eed2SHong Zhang     /* put together the new matrix */
59349566063dSJacob Faibussowitsch     PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth));
5935a6b2eed2SHong Zhang 
5936a6b2eed2SHong Zhang     /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
5937a6b2eed2SHong Zhang     /* Since these are PETSc arrays, change flags to free them as necessary. */
593887025532SHong Zhang     b_oth          = (Mat_SeqAIJ *)(*B_oth)->data;
5939e6b907acSBarry Smith     b_oth->free_a  = PETSC_TRUE;
5940e6b907acSBarry Smith     b_oth->free_ij = PETSC_TRUE;
594187025532SHong Zhang     b_oth->nonew   = 0;
5942a6b2eed2SHong Zhang 
59439566063dSJacob Faibussowitsch     PetscCall(PetscFree(bufj));
5944b7f45c76SHong Zhang     if (!startsj_s || !bufa_ptr) {
59459566063dSJacob Faibussowitsch       PetscCall(PetscFree2(sstartsj, rstartsj));
59469566063dSJacob Faibussowitsch       PetscCall(PetscFree(bufa_ptr));
5947dea91ad1SHong Zhang     } else {
5948b7f45c76SHong Zhang       *startsj_s = sstartsj;
59491d79065fSBarry Smith       *startsj_r = rstartsj;
595087025532SHong Zhang       *bufa_ptr  = bufa;
595187025532SHong Zhang     }
5952fff043a9SJunchao Zhang   } else if (scall == MAT_REUSE_MATRIX) {
59539566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha));
5954dea91ad1SHong Zhang   }
59553515ee7fSJunchao Zhang 
59569566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs));
59579566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs));
59589566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0));
59593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5960429d309bSHong Zhang }
5961ccd8e176SBarry Smith 
5962cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *);
5963cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *);
5964ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *);
59659779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
5966a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *);
5967191b95cbSRichard Tran Mills #endif
5968ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *);
5969cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
59705d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5971cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *);
59725d7652ecSHong Zhang #endif
5973d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
5974d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *);
5975d24d4204SJose E. Roman #endif
597663c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE)
597763c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
597863c07aadSStefano Zampini #endif
59793338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA)
59803338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *);
59813338378cSStefano Zampini #endif
5982d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
5983d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *);
5984d5e393b6SSuyash Tandon #endif
59853d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
59863d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *);
59873d0639e7SStefano Zampini #endif
5988d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *);
59894222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
59904222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat);
599117667f90SBarry Smith 
5992fc4dec0aSBarry Smith /*
5993fc4dec0aSBarry Smith     Computes (B'*A')' since computing B*A directly is untenable
5994fc4dec0aSBarry Smith 
5995fc4dec0aSBarry Smith                n                       p                          p
59962da392ccSBarry Smith         [             ]       [             ]         [                 ]
59972da392ccSBarry Smith       m [      A      ]  *  n [       B     ]   =   m [         C       ]
59982da392ccSBarry Smith         [             ]       [             ]         [                 ]
5999fc4dec0aSBarry Smith 
6000fc4dec0aSBarry Smith */
6001d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C)
6002d71ae5a4SJacob Faibussowitsch {
6003fc4dec0aSBarry Smith   Mat At, Bt, Ct;
6004fc4dec0aSBarry Smith 
6005fc4dec0aSBarry Smith   PetscFunctionBegin;
60069566063dSJacob Faibussowitsch   PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
60079566063dSJacob Faibussowitsch   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt));
6008fb842aefSJose E. Roman   PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct));
60099566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&At));
60109566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
60117fb60732SBarry Smith   PetscCall(MatTransposeSetPrecursor(Ct, C));
60129566063dSJacob Faibussowitsch   PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C));
60139566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Ct));
60143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6015fc4dec0aSBarry Smith }
6016fc4dec0aSBarry Smith 
6017d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C)
6018d71ae5a4SJacob Faibussowitsch {
60196718818eSStefano Zampini   PetscBool cisdense;
6020fc4dec0aSBarry Smith 
6021fc4dec0aSBarry Smith   PetscFunctionBegin;
602208401ef6SPierre Jolivet   PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n);
60239566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N));
60249566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6025d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, ""));
602648a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
60279566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
6028f75ecaa4SHong Zhang 
60294222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ;
60303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6031fc4dec0aSBarry Smith }
6032fc4dec0aSBarry Smith 
6033d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C)
6034d71ae5a4SJacob Faibussowitsch {
60354222ddf1SHong Zhang   Mat_Product *product = C->product;
60364222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
6037fc4dec0aSBarry Smith 
6038fc4dec0aSBarry Smith   PetscFunctionBegin;
603920f4b53cSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",
604020f4b53cSBarry Smith              A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
60414222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ;
60424222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
60433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6044fc4dec0aSBarry Smith }
6045fc4dec0aSBarry Smith 
6046d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C)
6047d71ae5a4SJacob Faibussowitsch {
60484222ddf1SHong Zhang   Mat_Product *product = C->product;
60494222ddf1SHong Zhang 
60504222ddf1SHong Zhang   PetscFunctionBegin;
605148a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C));
60523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
60534222ddf1SHong Zhang }
6054394ed5ebSJunchao Zhang 
605527430b45SBarry Smith /*
605627430b45SBarry Smith    Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix
6057394ed5ebSJunchao Zhang 
6058394ed5ebSJunchao Zhang   Input Parameters:
6059394ed5ebSJunchao Zhang 
6060651b1cf9SStefano Zampini     j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1)
6061651b1cf9SStefano Zampini     j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2)
6062394ed5ebSJunchao Zhang 
6063158ec288SJunchao Zhang     mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat
6064394ed5ebSJunchao Zhang 
6065394ed5ebSJunchao Zhang     For Set1, j1[] contains column indices of the nonzeros.
6066394ed5ebSJunchao Zhang     For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k
6067394ed5ebSJunchao Zhang     respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted,
6068394ed5ebSJunchao Zhang     but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1.
6069394ed5ebSJunchao Zhang 
6070394ed5ebSJunchao Zhang     Similar for Set2.
6071394ed5ebSJunchao Zhang 
6072394ed5ebSJunchao Zhang     This routine merges the two sets of nonzeros row by row and removes repeats.
6073394ed5ebSJunchao Zhang 
6074158ec288SJunchao Zhang   Output Parameters: (memory is allocated by the caller)
6075394ed5ebSJunchao Zhang 
6076394ed5ebSJunchao Zhang     i[],j[]: the CSR of the merged matrix, which has m rows.
6077394ed5ebSJunchao Zhang     imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix.
6078394ed5ebSJunchao Zhang     imap2[]: similar to imap1[], but for Set2.
6079394ed5ebSJunchao Zhang     Note we order nonzeros row-by-row and from left to right.
6080394ed5ebSJunchao Zhang */
6081d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[])
6082d71ae5a4SJacob Faibussowitsch {
6083394ed5ebSJunchao Zhang   PetscInt   r, m; /* Row index of mat */
6084394ed5ebSJunchao Zhang   PetscCount t, t1, t2, b1, e1, b2, e2;
6085394ed5ebSJunchao Zhang 
6086394ed5ebSJunchao Zhang   PetscFunctionBegin;
60879566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, NULL));
6088394ed5ebSJunchao Zhang   t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */
6089394ed5ebSJunchao Zhang   i[0]        = 0;
6090394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) { /* Do row by row merging */
6091394ed5ebSJunchao Zhang     b1 = rowBegin1[r];
6092394ed5ebSJunchao Zhang     e1 = rowEnd1[r];
6093394ed5ebSJunchao Zhang     b2 = rowBegin2[r];
6094394ed5ebSJunchao Zhang     e2 = rowEnd2[r];
6095394ed5ebSJunchao Zhang     while (b1 < e1 && b2 < e2) {
6096394ed5ebSJunchao Zhang       if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */
6097394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6098394ed5ebSJunchao Zhang         imap1[t1] = t;
6099394ed5ebSJunchao Zhang         imap2[t2] = t;
6100394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */
6101394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */
61029371c9d4SSatish Balay         t1++;
61039371c9d4SSatish Balay         t2++;
61049371c9d4SSatish Balay         t++;
6105394ed5ebSJunchao Zhang       } else if (j1[b1] < j2[b2]) {
6106394ed5ebSJunchao Zhang         j[t]      = j1[b1];
6107394ed5ebSJunchao Zhang         imap1[t1] = t;
6108394ed5ebSJunchao Zhang         b1 += jmap1[t1 + 1] - jmap1[t1];
61099371c9d4SSatish Balay         t1++;
61109371c9d4SSatish Balay         t++;
6111394ed5ebSJunchao Zhang       } else {
6112394ed5ebSJunchao Zhang         j[t]      = j2[b2];
6113394ed5ebSJunchao Zhang         imap2[t2] = t;
6114394ed5ebSJunchao Zhang         b2 += jmap2[t2 + 1] - jmap2[t2];
61159371c9d4SSatish Balay         t2++;
61169371c9d4SSatish Balay         t++;
6117394ed5ebSJunchao Zhang       }
6118394ed5ebSJunchao Zhang     }
6119394ed5ebSJunchao Zhang     /* Merge the remaining in either j1[] or j2[] */
6120394ed5ebSJunchao Zhang     while (b1 < e1) {
6121394ed5ebSJunchao Zhang       j[t]      = j1[b1];
6122394ed5ebSJunchao Zhang       imap1[t1] = t;
6123394ed5ebSJunchao Zhang       b1 += jmap1[t1 + 1] - jmap1[t1];
61249371c9d4SSatish Balay       t1++;
61259371c9d4SSatish Balay       t++;
6126394ed5ebSJunchao Zhang     }
6127394ed5ebSJunchao Zhang     while (b2 < e2) {
6128394ed5ebSJunchao Zhang       j[t]      = j2[b2];
6129394ed5ebSJunchao Zhang       imap2[t2] = t;
6130394ed5ebSJunchao Zhang       b2 += jmap2[t2 + 1] - jmap2[t2];
61319371c9d4SSatish Balay       t2++;
61329371c9d4SSatish Balay       t++;
6133394ed5ebSJunchao Zhang     }
61346497c311SBarry Smith     PetscCall(PetscIntCast(t, i + r + 1));
6135394ed5ebSJunchao Zhang   }
61363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6137394ed5ebSJunchao Zhang }
6138394ed5ebSJunchao Zhang 
613927430b45SBarry Smith /*
614027430b45SBarry Smith   Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block
6141394ed5ebSJunchao Zhang 
6142394ed5ebSJunchao Zhang   Input Parameters:
6143394ed5ebSJunchao Zhang     mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m.
6144394ed5ebSJunchao Zhang     n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[]
6145394ed5ebSJunchao Zhang       respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n.
6146394ed5ebSJunchao Zhang 
6147394ed5ebSJunchao Zhang       i[] is already sorted, but within a row, j[] is not sorted and might have repeats.
6148394ed5ebSJunchao Zhang       i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting.
6149394ed5ebSJunchao Zhang 
6150394ed5ebSJunchao Zhang   Output Parameters:
6151394ed5ebSJunchao Zhang     j[],perm[]: the routine needs to sort j[] within each row along with perm[].
6152394ed5ebSJunchao Zhang     rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller.
6153394ed5ebSJunchao Zhang       They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block,
6154394ed5ebSJunchao Zhang       and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block.
6155394ed5ebSJunchao Zhang 
6156394ed5ebSJunchao Zhang     Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine.
6157158ec288SJunchao Zhang       Atot: number of entries belonging to the diagonal block.
6158158ec288SJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6159394ed5ebSJunchao Zhang       Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count
6160394ed5ebSJunchao Zhang         repeats (i.e., same 'i,j' pair).
6161394ed5ebSJunchao Zhang       Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t]
6162394ed5ebSJunchao Zhang         is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0.
6163394ed5ebSJunchao Zhang 
6164394ed5ebSJunchao Zhang       Atot: number of entries belonging to the diagonal block
6165394ed5ebSJunchao Zhang       Annz: number of unique nonzeros belonging to the diagonal block.
6166394ed5ebSJunchao Zhang 
6167394ed5ebSJunchao Zhang     Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block.
6168394ed5ebSJunchao Zhang 
6169158ec288SJunchao Zhang     Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1().
6170394ed5ebSJunchao Zhang */
6171d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_)
6172d71ae5a4SJacob Faibussowitsch {
6173394ed5ebSJunchao Zhang   PetscInt    cstart, cend, rstart, rend, row, col;
6174394ed5ebSJunchao Zhang   PetscCount  Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */
6175394ed5ebSJunchao Zhang   PetscCount  Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */
6176394ed5ebSJunchao Zhang   PetscCount  k, m, p, q, r, s, mid;
6177394ed5ebSJunchao Zhang   PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap;
6178394ed5ebSJunchao Zhang 
6179394ed5ebSJunchao Zhang   PetscFunctionBegin;
61809566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
61819566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
6182394ed5ebSJunchao Zhang   m = rend - rstart;
6183394ed5ebSJunchao Zhang 
6184651b1cf9SStefano Zampini   /* Skip negative rows */
6185651b1cf9SStefano Zampini   for (k = 0; k < n; k++)
61869371c9d4SSatish Balay     if (i[k] >= 0) break;
6187394ed5ebSJunchao Zhang 
6188394ed5ebSJunchao Zhang   /* Process [k,n): sort and partition each local row into diag and offdiag portions,
6189394ed5ebSJunchao Zhang      fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz.
6190394ed5ebSJunchao Zhang   */
6191394ed5ebSJunchao Zhang   while (k < n) {
6192394ed5ebSJunchao Zhang     row = i[k];
6193394ed5ebSJunchao Zhang     /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */
61949371c9d4SSatish Balay     for (s = k; s < n; s++)
61959371c9d4SSatish Balay       if (i[s] != row) break;
6196651b1cf9SStefano Zampini 
61971690c2aeSBarry Smith     /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */
6198394ed5ebSJunchao Zhang     for (p = k; p < s; p++) {
61991690c2aeSBarry Smith       if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX;
6200394ed5ebSJunchao Zhang     }
62019566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k));
6202158ec288SJunchao Zhang     PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */
6203394ed5ebSJunchao Zhang     rowBegin[row - rstart] = k;
6204394ed5ebSJunchao Zhang     rowMid[row - rstart]   = mid;
6205394ed5ebSJunchao Zhang     rowEnd[row - rstart]   = s;
62068551dd9cSJunchao Zhang     PetscCheck(k == s || j[s - 1] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is >= matrix column size %" PetscInt_FMT, j[s - 1], mat->cmap->N);
6207394ed5ebSJunchao Zhang 
6208394ed5ebSJunchao Zhang     /* Count nonzeros of this diag/offdiag row, which might have repeats */
6209394ed5ebSJunchao Zhang     Atot += mid - k;
6210394ed5ebSJunchao Zhang     Btot += s - mid;
6211394ed5ebSJunchao Zhang 
6212651b1cf9SStefano Zampini     /* Count unique nonzeros of this diag row */
6213394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6214394ed5ebSJunchao Zhang       col = j[p];
62159371c9d4SSatish Balay       do {
62161690c2aeSBarry Smith         j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */
62179371c9d4SSatish Balay         p++;
6218651b1cf9SStefano Zampini       } while (p < mid && j[p] == col);
6219394ed5ebSJunchao Zhang       Annz++;
6220394ed5ebSJunchao Zhang     }
6221394ed5ebSJunchao Zhang 
6222651b1cf9SStefano Zampini     /* Count unique nonzeros of this offdiag row */
6223394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6224394ed5ebSJunchao Zhang       col = j[p];
6225d71ae5a4SJacob Faibussowitsch       do {
6226d71ae5a4SJacob Faibussowitsch         p++;
6227d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6228394ed5ebSJunchao Zhang       Bnnz++;
6229394ed5ebSJunchao Zhang     }
6230394ed5ebSJunchao Zhang     k = s;
6231394ed5ebSJunchao Zhang   }
6232394ed5ebSJunchao Zhang 
6233394ed5ebSJunchao Zhang   /* Allocation according to Atot, Btot, Annz, Bnnz */
6234158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Atot, &Aperm));
6235158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Btot, &Bperm));
6236158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap));
6237158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap));
6238394ed5ebSJunchao Zhang 
62396aad120cSJose E. Roman   /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */
6240394ed5ebSJunchao Zhang   Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0;
6241394ed5ebSJunchao Zhang   for (r = 0; r < m; r++) {
6242394ed5ebSJunchao Zhang     k   = rowBegin[r];
6243394ed5ebSJunchao Zhang     mid = rowMid[r];
6244394ed5ebSJunchao Zhang     s   = rowEnd[r];
62458e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k));
62468e3a54c0SPierre Jolivet     PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid));
6247394ed5ebSJunchao Zhang     Atot += mid - k;
6248394ed5ebSJunchao Zhang     Btot += s - mid;
6249394ed5ebSJunchao Zhang 
6250394ed5ebSJunchao Zhang     /* Scan column indices in this row and find out how many repeats each unique nonzero has */
6251394ed5ebSJunchao Zhang     for (p = k; p < mid;) {
6252394ed5ebSJunchao Zhang       col = j[p];
6253394ed5ebSJunchao Zhang       q   = p;
6254d71ae5a4SJacob Faibussowitsch       do {
6255d71ae5a4SJacob Faibussowitsch         p++;
6256d71ae5a4SJacob Faibussowitsch       } while (p < mid && j[p] == col);
6257394ed5ebSJunchao Zhang       Ajmap[Annz + 1] = Ajmap[Annz] + (p - q);
6258394ed5ebSJunchao Zhang       Annz++;
6259394ed5ebSJunchao Zhang     }
6260394ed5ebSJunchao Zhang 
6261394ed5ebSJunchao Zhang     for (p = mid; p < s;) {
6262394ed5ebSJunchao Zhang       col = j[p];
6263394ed5ebSJunchao Zhang       q   = p;
6264d71ae5a4SJacob Faibussowitsch       do {
6265d71ae5a4SJacob Faibussowitsch         p++;
6266d71ae5a4SJacob Faibussowitsch       } while (p < s && j[p] == col);
6267394ed5ebSJunchao Zhang       Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q);
6268394ed5ebSJunchao Zhang       Bnnz++;
6269394ed5ebSJunchao Zhang     }
6270394ed5ebSJunchao Zhang   }
6271394ed5ebSJunchao Zhang   /* Output */
6272394ed5ebSJunchao Zhang   *Aperm_ = Aperm;
6273394ed5ebSJunchao Zhang   *Annz_  = Annz;
6274394ed5ebSJunchao Zhang   *Atot_  = Atot;
6275394ed5ebSJunchao Zhang   *Ajmap_ = Ajmap;
6276394ed5ebSJunchao Zhang   *Bperm_ = Bperm;
6277394ed5ebSJunchao Zhang   *Bnnz_  = Bnnz;
6278394ed5ebSJunchao Zhang   *Btot_  = Btot;
6279394ed5ebSJunchao Zhang   *Bjmap_ = Bjmap;
62803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6281394ed5ebSJunchao Zhang }
6282394ed5ebSJunchao Zhang 
628327430b45SBarry Smith /*
628427430b45SBarry Smith   Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix
6285158ec288SJunchao Zhang 
6286158ec288SJunchao Zhang   Input Parameters:
6287158ec288SJunchao Zhang     nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[]
6288158ec288SJunchao Zhang     nnz:  number of unique nonzeros in the merged matrix
6289158ec288SJunchao Zhang     imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix
6290651b1cf9SStefano Zampini     jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set
6291158ec288SJunchao Zhang 
6292158ec288SJunchao Zhang   Output Parameter: (memory is allocated by the caller)
6293158ec288SJunchao Zhang     jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set
6294158ec288SJunchao Zhang 
6295158ec288SJunchao Zhang   Example:
6296158ec288SJunchao Zhang     nnz1 = 4
6297158ec288SJunchao Zhang     nnz  = 6
6298158ec288SJunchao Zhang     imap = [1,3,4,5]
6299158ec288SJunchao Zhang     jmap = [0,3,5,6,7]
6300158ec288SJunchao Zhang    then,
6301158ec288SJunchao Zhang     jmap_new = [0,0,3,3,5,6,7]
6302158ec288SJunchao Zhang */
6303d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[])
6304d71ae5a4SJacob Faibussowitsch {
6305158ec288SJunchao Zhang   PetscCount k, p;
6306158ec288SJunchao Zhang 
6307158ec288SJunchao Zhang   PetscFunctionBegin;
6308158ec288SJunchao Zhang   jmap_new[0] = 0;
6309158ec288SJunchao Zhang   p           = nnz;                /* p loops over jmap_new[] backwards */
6310158ec288SJunchao Zhang   for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */
6311158ec288SJunchao Zhang     for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1];
6312158ec288SJunchao Zhang   }
6313158ec288SJunchao Zhang   for (; p >= 0; p--) jmap_new[p] = jmap[0];
63143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6315158ec288SJunchao Zhang }
6316158ec288SJunchao Zhang 
63172a8381b2SBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(PetscCtxRt data)
63182c4ab24aSJunchao Zhang {
63192a8381b2SBarry Smith   MatCOOStruct_MPIAIJ *coo = *(MatCOOStruct_MPIAIJ **)data;
63202c4ab24aSJunchao Zhang 
63212c4ab24aSJunchao Zhang   PetscFunctionBegin;
63222c4ab24aSJunchao Zhang   PetscCall(PetscSFDestroy(&coo->sf));
63232c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm1));
63242c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm1));
63252c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap1));
63262c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap1));
63272c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aimap2));
63282c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bimap2));
63292c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Aperm2));
63302c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bperm2));
63312c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Ajmap2));
63322c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Bjmap2));
63332c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo->Cperm1));
63342c4ab24aSJunchao Zhang   PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf));
63352c4ab24aSJunchao Zhang   PetscCall(PetscFree(coo));
63362c4ab24aSJunchao Zhang   PetscFunctionReturn(PETSC_SUCCESS);
63372c4ab24aSJunchao Zhang }
63382c4ab24aSJunchao Zhang 
6339d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[])
6340d71ae5a4SJacob Faibussowitsch {
6341394ed5ebSJunchao Zhang   MPI_Comm             comm;
6342394ed5ebSJunchao Zhang   PetscMPIInt          rank, size;
6343394ed5ebSJunchao Zhang   PetscInt             m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */
6344394ed5ebSJunchao Zhang   PetscCount           k, p, q, rem;                           /* Loop variables over coo arrays */
6345394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
63462c4ab24aSJunchao Zhang   PetscContainer       container;
63472c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6348394ed5ebSJunchao Zhang 
6349394ed5ebSJunchao Zhang   PetscFunctionBegin;
63509566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->garray));
63519566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
6352cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE)
6353eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&mpiaij->colmap));
6354cbc6b225SStefano Zampini #else
63559566063dSJacob Faibussowitsch   PetscCall(PetscFree(mpiaij->colmap));
6356cbc6b225SStefano Zampini #endif
63579566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&mpiaij->Mvctx));
6358cbc6b225SStefano Zampini   mat->assembled     = PETSC_FALSE;
6359cbc6b225SStefano Zampini   mat->was_assembled = PETSC_FALSE;
6360cbc6b225SStefano Zampini 
63619566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
63629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
63639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
63649566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
63659566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
63669566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend));
63679566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend));
63689566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
63699566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &M, &N));
6370394ed5ebSJunchao Zhang 
63716aad120cSJose E. Roman   /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */
6372394ed5ebSJunchao Zhang   /* entries come first, then local rows, then remote rows.                     */
6373394ed5ebSJunchao Zhang   PetscCount n1 = coo_n, *perm1;
6374e8729f6fSJunchao Zhang   PetscInt  *i1 = coo_i, *j1 = coo_j;
6375e8729f6fSJunchao Zhang 
6376e8729f6fSJunchao Zhang   PetscCall(PetscMalloc1(n1, &perm1));
6377394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) perm1[k] = k;
6378394ed5ebSJunchao Zhang 
6379394ed5ebSJunchao Zhang   /* Manipulate indices so that entries with negative row or col indices will have smallest
6380394ed5ebSJunchao Zhang      row indices, local entries will have greater but negative row indices, and remote entries
6381394ed5ebSJunchao Zhang      will have positive row indices.
6382394ed5ebSJunchao Zhang   */
6383394ed5ebSJunchao Zhang   for (k = 0; k < n1; k++) {
63841690c2aeSBarry Smith     if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN;                /* e.g., -2^31, minimal to move them ahead */
63851690c2aeSBarry Smith     else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */
6386f7d195e4SLawrence Mitchell     else {
6387f7d195e4SLawrence Mitchell       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows");
63881690c2aeSBarry Smith       if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */
6389f7d195e4SLawrence Mitchell     }
6390394ed5ebSJunchao Zhang   }
6391394ed5ebSJunchao Zhang 
6392da81f932SPierre Jolivet   /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */
63939566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1));
6394651b1cf9SStefano Zampini 
6395651b1cf9SStefano Zampini   /* Advance k to the first entry we need to take care of */
6396651b1cf9SStefano Zampini   for (k = 0; k < n1; k++)
63971690c2aeSBarry Smith     if (i1[k] > PETSC_INT_MIN) break;
63986497c311SBarry Smith   PetscCount i1start = k;
6399651b1cf9SStefano Zampini 
64001690c2aeSBarry Smith   PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */
64011690c2aeSBarry Smith   for (; k < rem; k++) i1[k] += PETSC_INT_MAX;                                    /* Revert row indices of local rows*/
6402394ed5ebSJunchao Zhang 
64032b35a777SBarry Smith   PetscCheck(n1 == 0 || i1[n1 - 1] < M, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "COO row index %" PetscInt_FMT " is >= the matrix row size %" PetscInt_FMT, i1[n1 - 1], M);
64048551dd9cSJunchao Zhang 
6405394ed5ebSJunchao Zhang   /*           Send remote rows to their owner                                  */
6406394ed5ebSJunchao Zhang   /* Find which rows should be sent to which remote ranks*/
6407394ed5ebSJunchao Zhang   PetscInt        nsend = 0; /* Number of MPI ranks to send data to */
6408394ed5ebSJunchao Zhang   PetscMPIInt    *sendto;    /* [nsend], storing remote ranks */
6409394ed5ebSJunchao Zhang   PetscInt       *nentries;  /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */
6410394ed5ebSJunchao Zhang   const PetscInt *ranges;
6411394ed5ebSJunchao Zhang   PetscInt        maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */
6412394ed5ebSJunchao Zhang 
64139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges));
64149566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries));
6415394ed5ebSJunchao Zhang   for (k = rem; k < n1;) {
6416394ed5ebSJunchao Zhang     PetscMPIInt owner;
6417394ed5ebSJunchao Zhang     PetscInt    firstRow, lastRow;
6418cbc6b225SStefano Zampini 
6419394ed5ebSJunchao Zhang     /* Locate a row range */
6420394ed5ebSJunchao Zhang     firstRow = i1[k]; /* first row of this owner */
64219566063dSJacob Faibussowitsch     PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner));
6422394ed5ebSJunchao Zhang     lastRow = ranges[owner + 1] - 1; /* last row of this owner */
6423394ed5ebSJunchao Zhang 
64248551dd9cSJunchao Zhang     /* Find the first index 'p' in [k,n) with i1[p] belonging to next owner */
64259566063dSJacob Faibussowitsch     PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p));
6426394ed5ebSJunchao Zhang 
6427394ed5ebSJunchao Zhang     /* All entries in [k,p) belong to this remote owner */
6428394ed5ebSJunchao Zhang     if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */
6429394ed5ebSJunchao Zhang       PetscMPIInt *sendto2;
6430394ed5ebSJunchao Zhang       PetscInt    *nentries2;
6431394ed5ebSJunchao Zhang       PetscInt     maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size;
6432cbc6b225SStefano Zampini 
64339566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2));
64349566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(sendto2, sendto, maxNsend));
6435*099029b8SHan Liu       PetscCall(PetscArraycpy(nentries2, nentries, maxNsend));
6436*099029b8SHan Liu       PetscCall(PetscFree2(sendto, nentries));
6437394ed5ebSJunchao Zhang       sendto   = sendto2;
6438394ed5ebSJunchao Zhang       nentries = nentries2;
6439394ed5ebSJunchao Zhang       maxNsend = maxNsend2;
6440394ed5ebSJunchao Zhang     }
6441394ed5ebSJunchao Zhang     sendto[nsend] = owner;
64426497c311SBarry Smith     PetscCall(PetscIntCast(p - k, &nentries[nsend]));
6443394ed5ebSJunchao Zhang     nsend++;
6444394ed5ebSJunchao Zhang     k = p;
6445394ed5ebSJunchao Zhang   }
6446394ed5ebSJunchao Zhang 
6447394ed5ebSJunchao Zhang   /* Build 1st SF to know offsets on remote to send data */
6448394ed5ebSJunchao Zhang   PetscSF      sf1;
6449394ed5ebSJunchao Zhang   PetscInt     nroots = 1, nroots2 = 0;
6450394ed5ebSJunchao Zhang   PetscInt     nleaves = nsend, nleaves2 = 0;
6451394ed5ebSJunchao Zhang   PetscInt    *offsets;
6452394ed5ebSJunchao Zhang   PetscSFNode *iremote;
6453394ed5ebSJunchao Zhang 
64549566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf1));
64559566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &iremote));
64569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend, &offsets));
6457394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
6458394ed5ebSJunchao Zhang     iremote[k].rank  = sendto[k];
6459394ed5ebSJunchao Zhang     iremote[k].index = 0;
6460394ed5ebSJunchao Zhang     nleaves2 += nentries[k];
646154c59aa7SJacob Faibussowitsch     PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt");
6462394ed5ebSJunchao Zhang   }
64639566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
64649566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM));
64659566063dSJacob Faibussowitsch   PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */
64669566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf1));
6467e978a55eSPierre Jolivet   PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem);
6468394ed5ebSJunchao Zhang 
6469394ed5ebSJunchao Zhang   /* Build 2nd SF to send remote COOs to their owner */
6470394ed5ebSJunchao Zhang   PetscSF sf2;
6471394ed5ebSJunchao Zhang   nroots  = nroots2;
6472394ed5ebSJunchao Zhang   nleaves = nleaves2;
64739566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(comm, &sf2));
64749566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(sf2));
64759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nleaves, &iremote));
6476394ed5ebSJunchao Zhang   p = 0;
6477394ed5ebSJunchao Zhang   for (k = 0; k < nsend; k++) {
647854c59aa7SJacob Faibussowitsch     PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt");
6479394ed5ebSJunchao Zhang     for (q = 0; q < nentries[k]; q++, p++) {
6480394ed5ebSJunchao Zhang       iremote[p].rank = sendto[k];
64816497c311SBarry Smith       PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index));
6482394ed5ebSJunchao Zhang     }
6483394ed5ebSJunchao Zhang   }
64849566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER));
6485394ed5ebSJunchao Zhang 
6486394ed5ebSJunchao Zhang   /* Send the remote COOs to their owner */
6487394ed5ebSJunchao Zhang   PetscInt    n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */
6488394ed5ebSJunchao Zhang   PetscCount *perm2;                 /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */
64899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2));
6490834dcf29SHansol Suh   PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6491834dcf29SHansol Suh   PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6492de0a9f35SPierre Jolivet   PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem);
6493de0a9f35SPierre Jolivet   PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem);
6494834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE));
6495834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE));
6496834dcf29SHansol Suh   PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE));
6497834dcf29SHansol Suh   PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE));
6498394ed5ebSJunchao Zhang 
64999566063dSJacob Faibussowitsch   PetscCall(PetscFree(offsets));
65009566063dSJacob Faibussowitsch   PetscCall(PetscFree2(sendto, nentries));
6501394ed5ebSJunchao Zhang 
6502394ed5ebSJunchao Zhang   /* Sort received COOs by row along with the permutation array     */
6503394ed5ebSJunchao Zhang   for (k = 0; k < n2; k++) perm2[k] = k;
65049566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2));
6505394ed5ebSJunchao Zhang 
6506651b1cf9SStefano Zampini   /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */
6507651b1cf9SStefano Zampini   PetscCount *Cperm1;
6508834dcf29SHansol Suh   PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null");
6509de0a9f35SPierre Jolivet   PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem);
6510651b1cf9SStefano Zampini   PetscCall(PetscMalloc1(nleaves, &Cperm1));
6511834dcf29SHansol Suh   PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves));
6512651b1cf9SStefano Zampini 
6513651b1cf9SStefano Zampini   /* Support for HYPRE matrices, kind of a hack.
6514651b1cf9SStefano Zampini      Swap min column with diagonal so that diagonal values will go first */
6515651b1cf9SStefano Zampini   PetscBool hypre;
651617b874c6SStefano Zampini   PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre));
6517651b1cf9SStefano Zampini   if (hypre) {
6518651b1cf9SStefano Zampini     PetscInt *minj;
6519651b1cf9SStefano Zampini     PetscBT   hasdiag;
6520651b1cf9SStefano Zampini 
6521651b1cf9SStefano Zampini     PetscCall(PetscBTCreate(m, &hasdiag));
6522651b1cf9SStefano Zampini     PetscCall(PetscMalloc1(m, &minj));
65231690c2aeSBarry Smith     for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX;
6524651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6525651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend) continue;
6526651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6527651b1cf9SStefano Zampini       if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6528651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j1[k]);
6529651b1cf9SStefano Zampini     }
6530651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6531651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend) continue;
6532651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6533651b1cf9SStefano Zampini       if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex));
6534651b1cf9SStefano Zampini       minj[rindex] = PetscMin(minj[rindex], j2[k]);
6535651b1cf9SStefano Zampini     }
6536651b1cf9SStefano Zampini     for (k = i1start; k < rem; k++) {
6537651b1cf9SStefano Zampini       const PetscInt rindex = i1[k] - rstart;
6538651b1cf9SStefano Zampini       if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6539651b1cf9SStefano Zampini       if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart);
6540651b1cf9SStefano Zampini       else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex];
6541651b1cf9SStefano Zampini     }
6542651b1cf9SStefano Zampini     for (k = 0; k < n2; k++) {
6543651b1cf9SStefano Zampini       const PetscInt rindex = i2[k] - rstart;
6544651b1cf9SStefano Zampini       if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue;
6545651b1cf9SStefano Zampini       if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart);
6546651b1cf9SStefano Zampini       else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex];
6547651b1cf9SStefano Zampini     }
6548651b1cf9SStefano Zampini     PetscCall(PetscBTDestroy(&hasdiag));
6549651b1cf9SStefano Zampini     PetscCall(PetscFree(minj));
6550651b1cf9SStefano Zampini   }
6551651b1cf9SStefano Zampini 
6552651b1cf9SStefano Zampini   /* Split local COOs and received COOs into diag/offdiag portions */
6553651b1cf9SStefano Zampini   PetscCount *rowBegin1, *rowMid1, *rowEnd1;
6554651b1cf9SStefano Zampini   PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1;
6555651b1cf9SStefano Zampini   PetscCount  Annz1, Bnnz1, Atot1, Btot1;
6556394ed5ebSJunchao Zhang   PetscCount *rowBegin2, *rowMid2, *rowEnd2;
6557394ed5ebSJunchao Zhang   PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2;
6558394ed5ebSJunchao Zhang   PetscCount  Annz2, Bnnz2, Atot2, Btot2;
6559394ed5ebSJunchao Zhang 
6560651b1cf9SStefano Zampini   PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1));
65619566063dSJacob Faibussowitsch   PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2));
6562651b1cf9SStefano Zampini   PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1));
65639566063dSJacob Faibussowitsch   PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2));
6564394ed5ebSJunchao Zhang 
6565394ed5ebSJunchao Zhang   /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */
6566394ed5ebSJunchao Zhang   PetscInt *Ai, *Bi;
6567394ed5ebSJunchao Zhang   PetscInt *Aj, *Bj;
6568394ed5ebSJunchao Zhang 
65699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Ai));
65709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &Bi));
65719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */
65729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj));
6573394ed5ebSJunchao Zhang 
6574394ed5ebSJunchao Zhang   PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2;
6575158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz1, &Aimap1));
6576158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz1, &Bimap1));
6577158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz2, &Aimap2));
6578158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz2, &Bimap2));
6579394ed5ebSJunchao Zhang 
65809566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj));
65819566063dSJacob Faibussowitsch   PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj));
6582158ec288SJunchao Zhang 
6583158ec288SJunchao Zhang   /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we     */
6584158ec288SJunchao Zhang   /* expect nonzeros in A/B most likely have local contributing entries        */
6585158ec288SJunchao Zhang   PetscInt    Annz = Ai[m];
6586158ec288SJunchao Zhang   PetscInt    Bnnz = Bi[m];
6587158ec288SJunchao Zhang   PetscCount *Ajmap1_new, *Bjmap1_new;
6588158ec288SJunchao Zhang 
6589158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new));
6590158ec288SJunchao Zhang   PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new));
6591158ec288SJunchao Zhang 
6592158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new));
6593158ec288SJunchao Zhang   PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new));
6594158ec288SJunchao Zhang 
6595158ec288SJunchao Zhang   PetscCall(PetscFree(Aimap1));
6596158ec288SJunchao Zhang   PetscCall(PetscFree(Ajmap1));
6597158ec288SJunchao Zhang   PetscCall(PetscFree(Bimap1));
6598158ec288SJunchao Zhang   PetscCall(PetscFree(Bjmap1));
65999566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1));
66009566063dSJacob Faibussowitsch   PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2));
6601e8729f6fSJunchao Zhang   PetscCall(PetscFree(perm1));
66029566063dSJacob Faibussowitsch   PetscCall(PetscFree3(i2, j2, perm2));
6603394ed5ebSJunchao Zhang 
6604158ec288SJunchao Zhang   Ajmap1 = Ajmap1_new;
6605158ec288SJunchao Zhang   Bjmap1 = Bjmap1_new;
6606158ec288SJunchao Zhang 
6607394ed5ebSJunchao Zhang   /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */
6608394ed5ebSJunchao Zhang   if (Annz < Annz1 + Annz2) {
6609394ed5ebSJunchao Zhang     PetscInt *Aj_new;
66109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Annz, &Aj_new));
66119566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Aj_new, Aj, Annz));
66129566063dSJacob Faibussowitsch     PetscCall(PetscFree(Aj));
6613394ed5ebSJunchao Zhang     Aj = Aj_new;
6614394ed5ebSJunchao Zhang   }
6615394ed5ebSJunchao Zhang 
6616394ed5ebSJunchao Zhang   if (Bnnz < Bnnz1 + Bnnz2) {
6617394ed5ebSJunchao Zhang     PetscInt *Bj_new;
66189566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Bnnz, &Bj_new));
66199566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz));
66209566063dSJacob Faibussowitsch     PetscCall(PetscFree(Bj));
6621394ed5ebSJunchao Zhang     Bj = Bj_new;
6622394ed5ebSJunchao Zhang   }
6623394ed5ebSJunchao Zhang 
6624cbc6b225SStefano Zampini   /* Create new submatrices for on-process and off-process coupling                  */
6625394ed5ebSJunchao Zhang   PetscScalar     *Aa, *Ba;
6626cbc6b225SStefano Zampini   MatType          rtype;
6627394ed5ebSJunchao Zhang   Mat_SeqAIJ      *a, *b;
6628cf8ba265SJunchao Zhang   PetscObjectState state;
66299566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */
66309566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(Bnnz, &Ba));
6631394ed5ebSJunchao Zhang   /* make Aj[] local, i.e, based off the start column of the diagonal portion */
66329371c9d4SSatish Balay   if (cstart) {
66339371c9d4SSatish Balay     for (k = 0; k < Annz; k++) Aj[k] -= cstart;
66349371c9d4SSatish Balay   }
6635c508b908SBarry Smith 
66369566063dSJacob Faibussowitsch   PetscCall(MatGetRootType_Private(mat, &rtype));
6637c508b908SBarry Smith 
6638c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->A);
6639c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->A));
66409566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A));
66410da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat));
6642c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->A);
6643c508b908SBarry Smith 
6644c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(mpiaij->B);
6645c508b908SBarry Smith   PetscCall(MatDestroy(&mpiaij->B));
66469566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B));
66470da474c6SJeremy L Thompson   PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat));
6648c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(mpiaij->B);
6649c508b908SBarry Smith 
66509566063dSJacob Faibussowitsch   PetscCall(MatSetUpMultiply_MPIAIJ(mat));
66515bb69915SJunchao Zhang   mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ
6652cf8ba265SJunchao Zhang   state              = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate;
6653462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
6654cbc6b225SStefano Zampini 
6655394ed5ebSJunchao Zhang   a          = (Mat_SeqAIJ *)mpiaij->A->data;
6656394ed5ebSJunchao Zhang   b          = (Mat_SeqAIJ *)mpiaij->B->data;
66579f0612e4SBarry Smith   a->free_a  = PETSC_TRUE;
66589f0612e4SBarry Smith   a->free_ij = PETSC_TRUE;
66599f0612e4SBarry Smith   b->free_a  = PETSC_TRUE;
66609f0612e4SBarry Smith   b->free_ij = PETSC_TRUE;
666117b874c6SStefano Zampini   a->maxnz   = a->nz;
666217b874c6SStefano Zampini   b->maxnz   = b->nz;
6663394ed5ebSJunchao Zhang 
6664cbc6b225SStefano Zampini   /* conversion must happen AFTER multiply setup */
66659566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A));
66669566063dSJacob Faibussowitsch   PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B));
66679566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&mpiaij->lvec));
66689566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL));
6669cbc6b225SStefano Zampini 
66702c4ab24aSJunchao Zhang   // Put the COO struct in a container and then attach that to the matrix
66712c4ab24aSJunchao Zhang   PetscCall(PetscMalloc1(1, &coo));
66722c4ab24aSJunchao Zhang   coo->n       = coo_n;
66732c4ab24aSJunchao Zhang   coo->sf      = sf2;
66742c4ab24aSJunchao Zhang   coo->sendlen = nleaves;
66752c4ab24aSJunchao Zhang   coo->recvlen = nroots;
66762c4ab24aSJunchao Zhang   coo->Annz    = Annz;
66772c4ab24aSJunchao Zhang   coo->Bnnz    = Bnnz;
66782c4ab24aSJunchao Zhang   coo->Annz2   = Annz2;
66792c4ab24aSJunchao Zhang   coo->Bnnz2   = Bnnz2;
66802c4ab24aSJunchao Zhang   coo->Atot1   = Atot1;
66812c4ab24aSJunchao Zhang   coo->Atot2   = Atot2;
66822c4ab24aSJunchao Zhang   coo->Btot1   = Btot1;
66832c4ab24aSJunchao Zhang   coo->Btot2   = Btot2;
66842c4ab24aSJunchao Zhang   coo->Ajmap1  = Ajmap1;
66852c4ab24aSJunchao Zhang   coo->Aperm1  = Aperm1;
66862c4ab24aSJunchao Zhang   coo->Bjmap1  = Bjmap1;
66872c4ab24aSJunchao Zhang   coo->Bperm1  = Bperm1;
66882c4ab24aSJunchao Zhang   coo->Aimap2  = Aimap2;
66892c4ab24aSJunchao Zhang   coo->Ajmap2  = Ajmap2;
66902c4ab24aSJunchao Zhang   coo->Aperm2  = Aperm2;
66912c4ab24aSJunchao Zhang   coo->Bimap2  = Bimap2;
66922c4ab24aSJunchao Zhang   coo->Bjmap2  = Bjmap2;
66932c4ab24aSJunchao Zhang   coo->Bperm2  = Bperm2;
66942c4ab24aSJunchao Zhang   coo->Cperm1  = Cperm1;
66952c4ab24aSJunchao Zhang   // Allocate in preallocation. If not used, it has zero cost on host
66962c4ab24aSJunchao Zhang   PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf));
66972c4ab24aSJunchao Zhang   PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container));
66982c4ab24aSJunchao Zhang   PetscCall(PetscContainerSetPointer(container, coo));
669949abdd8aSBarry Smith   PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ));
67002c4ab24aSJunchao Zhang   PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container));
67012c4ab24aSJunchao Zhang   PetscCall(PetscContainerDestroy(&container));
67023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6703394ed5ebSJunchao Zhang }
6704394ed5ebSJunchao Zhang 
6705d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode)
6706d71ae5a4SJacob Faibussowitsch {
6707394ed5ebSJunchao Zhang   Mat_MPIAIJ          *mpiaij = (Mat_MPIAIJ *)mat->data;
6708394ed5ebSJunchao Zhang   Mat                  A = mpiaij->A, B = mpiaij->B;
6709394ed5ebSJunchao Zhang   PetscScalar         *Aa, *Ba;
67102c4ab24aSJunchao Zhang   PetscScalar         *sendbuf, *recvbuf;
67112c4ab24aSJunchao Zhang   const PetscCount    *Ajmap1, *Ajmap2, *Aimap2;
67122c4ab24aSJunchao Zhang   const PetscCount    *Bjmap1, *Bjmap2, *Bimap2;
67132c4ab24aSJunchao Zhang   const PetscCount    *Aperm1, *Aperm2, *Bperm1, *Bperm2;
67142c4ab24aSJunchao Zhang   const PetscCount    *Cperm1;
67152c4ab24aSJunchao Zhang   PetscContainer       container;
67162c4ab24aSJunchao Zhang   MatCOOStruct_MPIAIJ *coo;
6717394ed5ebSJunchao Zhang 
6718394ed5ebSJunchao Zhang   PetscFunctionBegin;
67192c4ab24aSJunchao Zhang   PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container));
67202c4ab24aSJunchao Zhang   PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix");
67212a8381b2SBarry Smith   PetscCall(PetscContainerGetPointer(container, &coo));
67222c4ab24aSJunchao Zhang   sendbuf = coo->sendbuf;
67232c4ab24aSJunchao Zhang   recvbuf = coo->recvbuf;
67242c4ab24aSJunchao Zhang   Ajmap1  = coo->Ajmap1;
67252c4ab24aSJunchao Zhang   Ajmap2  = coo->Ajmap2;
67262c4ab24aSJunchao Zhang   Aimap2  = coo->Aimap2;
67272c4ab24aSJunchao Zhang   Bjmap1  = coo->Bjmap1;
67282c4ab24aSJunchao Zhang   Bjmap2  = coo->Bjmap2;
67292c4ab24aSJunchao Zhang   Bimap2  = coo->Bimap2;
67302c4ab24aSJunchao Zhang   Aperm1  = coo->Aperm1;
67312c4ab24aSJunchao Zhang   Aperm2  = coo->Aperm2;
67322c4ab24aSJunchao Zhang   Bperm1  = coo->Bperm1;
67332c4ab24aSJunchao Zhang   Bperm2  = coo->Bperm2;
67342c4ab24aSJunchao Zhang   Cperm1  = coo->Cperm1;
67352c4ab24aSJunchao Zhang 
67369566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */
67379566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArray(B, &Ba));
6738394ed5ebSJunchao Zhang 
6739394ed5ebSJunchao Zhang   /* Pack entries to be sent to remote */
67402c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]];
6741394ed5ebSJunchao Zhang 
6742394ed5ebSJunchao Zhang   /* Send remote entries to their owner and overlap the communication with local computation */
67432c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE));
6744394ed5ebSJunchao Zhang   /* Add local entries to A and B */
67452c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */
6746da81f932SPierre Jolivet     PetscScalar sum = 0.0;                     /* Do partial summation first to improve numerical stability */
6747158ec288SJunchao Zhang     for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]];
6748158ec288SJunchao Zhang     Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum;
6749394ed5ebSJunchao Zhang   }
67502c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz; i++) {
6751158ec288SJunchao Zhang     PetscScalar sum = 0.0;
6752158ec288SJunchao Zhang     for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]];
6753158ec288SJunchao Zhang     Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum;
6754394ed5ebSJunchao Zhang   }
67552c4ab24aSJunchao Zhang   PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE));
6756394ed5ebSJunchao Zhang 
6757394ed5ebSJunchao Zhang   /* Add received remote entries to A and B */
67582c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Annz2; i++) {
6759394ed5ebSJunchao Zhang     for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]];
6760394ed5ebSJunchao Zhang   }
67612c4ab24aSJunchao Zhang   for (PetscCount i = 0; i < coo->Bnnz2; i++) {
6762394ed5ebSJunchao Zhang     for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]];
6763394ed5ebSJunchao Zhang   }
67649566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(A, &Aa));
67659566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArray(B, &Ba));
67663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6767394ed5ebSJunchao Zhang }
6768394ed5ebSJunchao Zhang 
6769ccd8e176SBarry Smith /*MC
6770ccd8e176SBarry Smith    MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices.
6771ccd8e176SBarry Smith 
6772ccd8e176SBarry Smith    Options Database Keys:
677311a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()`
6774ccd8e176SBarry Smith 
6775ccd8e176SBarry Smith    Level: beginner
67760cd7f59aSBarry Smith 
67770cd7f59aSBarry Smith    Notes:
67782ef1f0ffSBarry Smith    `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values,
67790cd7f59aSBarry Smith     in this case the values associated with the rows and columns one passes in are set to zero
67800cd7f59aSBarry Smith     in the matrix
67810cd7f59aSBarry Smith 
678211a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
678311a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
6784ccd8e176SBarry Smith 
67851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()`
6786ccd8e176SBarry Smith M*/
6787d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B)
6788d71ae5a4SJacob Faibussowitsch {
6789ccd8e176SBarry Smith   Mat_MPIAIJ *b;
6790ccd8e176SBarry Smith   PetscMPIInt size;
6791ccd8e176SBarry Smith 
6792ccd8e176SBarry Smith   PetscFunctionBegin;
67939566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
67942205254eSKarl Rupp 
67954dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
6796ccd8e176SBarry Smith   B->data       = (void *)b;
6797aea10558SJacob Faibussowitsch   B->ops[0]     = MatOps_Values;
6798ccd8e176SBarry Smith   B->assembled  = PETSC_FALSE;
6799ccd8e176SBarry Smith   B->insertmode = NOT_SET_VALUES;
6800ccd8e176SBarry Smith   b->size       = size;
68012205254eSKarl Rupp 
68029566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
6803ccd8e176SBarry Smith 
6804ccd8e176SBarry Smith   /* build cache for off array entries formed */
68059566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
68062205254eSKarl Rupp 
6807ccd8e176SBarry Smith   b->donotstash  = PETSC_FALSE;
6808f4259b30SLisandro Dalcin   b->colmap      = NULL;
6809f4259b30SLisandro Dalcin   b->garray      = NULL;
6810ccd8e176SBarry Smith   b->roworiented = PETSC_TRUE;
6811ccd8e176SBarry Smith 
6812ccd8e176SBarry Smith   /* stuff used for matrix vector multiply */
68130298fd71SBarry Smith   b->lvec  = NULL;
68140298fd71SBarry Smith   b->Mvctx = NULL;
6815ccd8e176SBarry Smith 
6816ccd8e176SBarry Smith   /* stuff for MatGetRow() */
6817f4259b30SLisandro Dalcin   b->rowindices   = NULL;
6818f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
6819ccd8e176SBarry Smith   b->getrowactive = PETSC_FALSE;
6820ccd8e176SBarry Smith 
6821f719121fSJed Brown   /* flexible pointer used in CUSPARSE classes */
68220298fd71SBarry Smith   b->spptr = NULL;
6823f60c3dc2SHong Zhang 
68249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ));
68259566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ));
68269566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ));
68279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ));
68289566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ));
68299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ));
6830674b392bSAlexander   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ));
68319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ));
68329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ));
68339566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM));
68349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL));
68353d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA)
68369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE));
68373d0639e7SStefano Zampini #endif
6838d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP)
6839d5e393b6SSuyash Tandon   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE));
6840d5e393b6SSuyash Tandon #endif
68413d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS)
68429566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos));
68433d0639e7SStefano Zampini #endif
68449779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE)
68459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL));
6846191b95cbSRichard Tran Mills #endif
68479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL));
68489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ));
68499566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ));
68509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense));
68515d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
68529566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental));
68535d7652ecSHong Zhang #endif
6854d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE))
68559566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK));
6856d24d4204SJose E. Roman #endif
68579566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS));
68589566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL));
68593dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
68609566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE));
68619566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ));
68623dad0653Sstefano_zampini #endif
68639566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ));
68649566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ));
68659566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ));
68669566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ));
68679566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ));
68683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6869ccd8e176SBarry Smith }
687081824310SBarry Smith 
68715d83a8b1SBarry Smith /*@
687211a5261eSBarry Smith   MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal"
687303bfb495SBarry Smith   and "off-diagonal" part of the matrix in CSR format.
687403bfb495SBarry Smith 
6875d083f849SBarry Smith   Collective
687603bfb495SBarry Smith 
687703bfb495SBarry Smith   Input Parameters:
687803bfb495SBarry Smith + comm - MPI communicator
687911a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
688003bfb495SBarry Smith . n    - This value should be the same as the local size used in creating the
6881d8a51d2aSBarry Smith          x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have
68822ef1f0ffSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
68832ef1f0ffSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
68842ef1f0ffSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
6885483a2f95SBarry Smith . i    - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix
688604ccdda3SJunchao Zhang . j    - column indices, which must be local, i.e., based off the start column of the diagonal portion
688703bfb495SBarry Smith . a    - matrix values
6888483a2f95SBarry Smith . oi   - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix
68892ef1f0ffSBarry Smith . oj   - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix
689003bfb495SBarry Smith - oa   - matrix values
689103bfb495SBarry Smith 
689203bfb495SBarry Smith   Output Parameter:
689303bfb495SBarry Smith . mat - the matrix
689403bfb495SBarry Smith 
689503bfb495SBarry Smith   Level: advanced
689603bfb495SBarry Smith 
689703bfb495SBarry Smith   Notes:
6898f13dfd9eSBarry Smith   The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user
6899292fb18eSBarry Smith   must free the arrays once the matrix has been destroyed and not before.
690003bfb495SBarry Smith 
69012ef1f0ffSBarry Smith   The `i` and `j` indices are 0 based
690203bfb495SBarry Smith 
69032ef1f0ffSBarry Smith   See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix
690403bfb495SBarry Smith 
69057b55108eSBarry Smith   This sets local rows and cannot be used to set off-processor values.
69067b55108eSBarry Smith 
6907dca341c0SJed Brown   Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a
6908dca341c0SJed Brown   legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does
6909dca341c0SJed Brown   not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because
6910dca341c0SJed Brown   the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to
691111a5261eSBarry Smith   keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all
6912dca341c0SJed Brown   communication if it is known that only local entries will be set.
691303bfb495SBarry Smith 
69141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
6915db781477SPatrick Sanan           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()`
69162b26979fSBarry Smith @*/
6917d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat)
6918d71ae5a4SJacob Faibussowitsch {
691903bfb495SBarry Smith   Mat_MPIAIJ *maij;
692003bfb495SBarry Smith 
692103bfb495SBarry Smith   PetscFunctionBegin;
692208401ef6SPierre Jolivet   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
6923aed4548fSBarry Smith   PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
6924aed4548fSBarry Smith   PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0");
69259566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
69269566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
69279566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIAIJ));
692803bfb495SBarry Smith   maij = (Mat_MPIAIJ *)(*mat)->data;
69292205254eSKarl Rupp 
69308d7a6e47SBarry Smith   (*mat)->preallocated = PETSC_TRUE;
693103bfb495SBarry Smith 
69329566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->rmap));
69339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp((*mat)->cmap));
693403bfb495SBarry Smith 
69359566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A));
69369566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B));
693703bfb495SBarry Smith 
69389566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
69399566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY));
69409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY));
69419566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE));
69429566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
69433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
694403bfb495SBarry Smith }
694503bfb495SBarry Smith 
69464e84afc0SStefano Zampini typedef struct {
69474e84afc0SStefano Zampini   Mat       *mp;    /* intermediate products */
69484e84afc0SStefano Zampini   PetscBool *mptmp; /* is the intermediate product temporary ? */
69494e84afc0SStefano Zampini   PetscInt   cp;    /* number of intermediate products */
69504e84afc0SStefano Zampini 
69514e84afc0SStefano Zampini   /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */
69524e84afc0SStefano Zampini   PetscInt    *startsj_s, *startsj_r;
69534e84afc0SStefano Zampini   PetscScalar *bufa;
69544e84afc0SStefano Zampini   Mat          P_oth;
69554e84afc0SStefano Zampini 
69564e84afc0SStefano Zampini   /* may take advantage of merging product->B */
6957ddea5d60SJunchao Zhang   Mat Bloc; /* B-local by merging diag and off-diag */
69584e84afc0SStefano Zampini 
6959ddea5d60SJunchao Zhang   /* cusparse does not have support to split between symbolic and numeric phases.
69604e84afc0SStefano Zampini      When api_user is true, we don't need to update the numerical values
69614e84afc0SStefano Zampini      of the temporary storage */
69624e84afc0SStefano Zampini   PetscBool reusesym;
69634e84afc0SStefano Zampini 
69644e84afc0SStefano Zampini   /* support for COO values insertion */
6965ddea5d60SJunchao Zhang   PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */
6966ddea5d60SJunchao Zhang   PetscInt   **own;           /* own[i] points to address of on-process COO indices for Mat mp[i] */
6967ddea5d60SJunchao Zhang   PetscInt   **off;           /* off[i] points to address of off-process COO indices for Mat mp[i] */
6968ddea5d60SJunchao Zhang   PetscBool    hasoffproc;    /* if true, have off-process values insertion (i.e. AtB or PtAP) */
6969c215019aSStefano Zampini   PetscSF      sf;            /* used for non-local values insertion and memory malloc */
6970c215019aSStefano Zampini   PetscMemType mtype;
69714e84afc0SStefano Zampini 
69724e84afc0SStefano Zampini   /* customization */
69734e84afc0SStefano Zampini   PetscBool abmerge;
6974abb89eb1SStefano Zampini   PetscBool P_oth_bind;
69754e84afc0SStefano Zampini } MatMatMPIAIJBACKEND;
69764e84afc0SStefano Zampini 
69772a8381b2SBarry Smith static PetscErrorCode MatProductCtxDestroy_MatMatMPIAIJBACKEND(PetscCtxRt data)
6978d71ae5a4SJacob Faibussowitsch {
6979cc1eb50dSBarry Smith   MatMatMPIAIJBACKEND *mmdata = *(MatMatMPIAIJBACKEND **)data;
69804e84afc0SStefano Zampini   PetscInt             i;
69814e84afc0SStefano Zampini 
69824e84afc0SStefano Zampini   PetscFunctionBegin;
69839566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r));
69849566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->bufa));
69859566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v));
69869566063dSJacob Faibussowitsch   PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w));
69879566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->P_oth));
69889566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&mmdata->Bloc));
69899566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&mmdata->sf));
699048a46eb9SPierre Jolivet   for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i]));
69919566063dSJacob Faibussowitsch   PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp));
69929566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own[0]));
69939566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->own));
69949566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off[0]));
69959566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata->off));
69969566063dSJacob Faibussowitsch   PetscCall(PetscFree(mmdata));
69973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
69984e84afc0SStefano Zampini }
69994e84afc0SStefano Zampini 
7000fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[].
7001fff043a9SJunchao Zhang    If idx is NULL, copy the whole data array of A to v[]
7002fff043a9SJunchao Zhang  */
7003d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[])
7004d71ae5a4SJacob Faibussowitsch {
7005c215019aSStefano Zampini   PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]);
7006c215019aSStefano Zampini 
7007c215019aSStefano Zampini   PetscFunctionBegin;
70089566063dSJacob Faibussowitsch   PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f));
7009c215019aSStefano Zampini   if (f) {
70109566063dSJacob Faibussowitsch     PetscCall((*f)(A, n, idx, v));
7011c215019aSStefano Zampini   } else {
7012c215019aSStefano Zampini     const PetscScalar *vv;
7013c215019aSStefano Zampini 
70149566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArrayRead(A, &vv));
7015c215019aSStefano Zampini     if (n && idx) {
7016c215019aSStefano Zampini       PetscScalar    *w  = v;
7017c215019aSStefano Zampini       const PetscInt *oi = idx;
7018c215019aSStefano Zampini       PetscInt        j;
7019c215019aSStefano Zampini 
7020c215019aSStefano Zampini       for (j = 0; j < n; j++) *w++ = vv[*oi++];
7021c215019aSStefano Zampini     } else {
70229566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(v, vv, n));
7023c215019aSStefano Zampini     }
70249566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArrayRead(A, &vv));
7025c215019aSStefano Zampini   }
70263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
7027c215019aSStefano Zampini }
7028c215019aSStefano Zampini 
7029d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C)
7030d71ae5a4SJacob Faibussowitsch {
70314e84afc0SStefano Zampini   MatMatMPIAIJBACKEND *mmdata;
70324e84afc0SStefano Zampini   PetscInt             i, n_d, n_o;
70334e84afc0SStefano Zampini 
70344e84afc0SStefano Zampini   PetscFunctionBegin;
70354e84afc0SStefano Zampini   MatCheckProduct(C, 1);
703628b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
70374e84afc0SStefano Zampini   mmdata = (MatMatMPIAIJBACKEND *)C->product->data;
70384e84afc0SStefano Zampini   if (!mmdata->reusesym) { /* update temporary matrices */
703948a46eb9SPierre Jolivet     if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
704048a46eb9SPierre Jolivet     if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc));
70414e84afc0SStefano Zampini   }
70424e84afc0SStefano Zampini   mmdata->reusesym = PETSC_FALSE;
7043abb89eb1SStefano Zampini 
7044abb89eb1SStefano Zampini   for (i = 0; i < mmdata->cp; i++) {
704508401ef6SPierre Jolivet     PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]);
70469566063dSJacob Faibussowitsch     PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i]));
7047abb89eb1SStefano Zampini   }
70484e84afc0SStefano Zampini   for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) {
70496497c311SBarry Smith     PetscInt noff;
70504e84afc0SStefano Zampini 
70516497c311SBarry Smith     PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff));
70524e84afc0SStefano Zampini     if (mmdata->mptmp[i]) continue;
70534e84afc0SStefano Zampini     if (noff) {
70546497c311SBarry Smith       PetscInt nown;
7055c215019aSStefano Zampini 
70566497c311SBarry Smith       PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown));
70579566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o));
70589566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d));
70594e84afc0SStefano Zampini       n_o += noff;
70604e84afc0SStefano Zampini       n_d += nown;
70614e84afc0SStefano Zampini     } else {
7062c215019aSStefano Zampini       Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data;
7063c215019aSStefano Zampini 
70649566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d));
70654e84afc0SStefano Zampini       n_d += mm->nz;
70664e84afc0SStefano Zampini     }
70674e84afc0SStefano Zampini   }
7068c215019aSStefano Zampini   if (mmdata->hasoffproc) { /* offprocess insertion */
70699566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
70709566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d));
70714e84afc0SStefano Zampini   }
70729566063dSJacob Faibussowitsch   PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES));
70733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
70744e84afc0SStefano Zampini }
70754e84afc0SStefano Zampini 
70764e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */
70774e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4
7078d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C)
7079d71ae5a4SJacob Faibussowitsch {
70804e84afc0SStefano Zampini   Mat_Product           *product = C->product;
7081ddea5d60SJunchao Zhang   Mat                    A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */
70824e84afc0SStefano Zampini   Mat_MPIAIJ            *a, *p;
70834e84afc0SStefano Zampini   MatMatMPIAIJBACKEND   *mmdata;
70844e84afc0SStefano Zampini   ISLocalToGlobalMapping P_oth_l2g = NULL;
70854e84afc0SStefano Zampini   IS                     glob      = NULL;
70864e84afc0SStefano Zampini   const char            *prefix;
70874e84afc0SStefano Zampini   char                   pprefix[256];
70884e84afc0SStefano Zampini   const PetscInt        *globidx, *P_oth_idx;
708982a78a4eSJed Brown   PetscInt               i, j, cp, m, n, M, N, *coo_i, *coo_j;
709082a78a4eSJed Brown   PetscCount             ncoo, ncoo_d, ncoo_o, ncoo_oown;
7091ddea5d60SJunchao Zhang   PetscInt               cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */
7092ddea5d60SJunchao Zhang                                                                                          /* type-0: consecutive, start from 0; type-1: consecutive with */
7093ddea5d60SJunchao Zhang                                                                                          /* a base offset; type-2: sparse with a local to global map table */
7094ddea5d60SJunchao Zhang   const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE];       /* col/row local to global map array (table) for type-2 map type */
7095ddea5d60SJunchao Zhang 
70964e84afc0SStefano Zampini   MatProductType ptype;
7097d5e393b6SSuyash Tandon   PetscBool      mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk;
70984e84afc0SStefano Zampini   PetscMPIInt    size;
70994e84afc0SStefano Zampini 
71004e84afc0SStefano Zampini   PetscFunctionBegin;
71014e84afc0SStefano Zampini   MatCheckProduct(C, 1);
710228b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
71034e84afc0SStefano Zampini   ptype = product->type;
7104b94d7dedSBarry Smith   if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) {
7105fa046f9fSJunchao Zhang     ptype                                          = MATPRODUCT_AB;
7106fa046f9fSJunchao Zhang     product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE;
7107fa046f9fSJunchao Zhang   }
71084e84afc0SStefano Zampini   switch (ptype) {
71094e84afc0SStefano Zampini   case MATPRODUCT_AB:
71104e84afc0SStefano Zampini     A          = product->A;
71114e84afc0SStefano Zampini     P          = product->B;
71124e84afc0SStefano Zampini     m          = A->rmap->n;
71134e84afc0SStefano Zampini     n          = P->cmap->n;
71144e84afc0SStefano Zampini     M          = A->rmap->N;
71154e84afc0SStefano Zampini     N          = P->cmap->N;
7116ddea5d60SJunchao Zhang     hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */
71174e84afc0SStefano Zampini     break;
71184e84afc0SStefano Zampini   case MATPRODUCT_AtB:
71194e84afc0SStefano Zampini     P          = product->A;
71204e84afc0SStefano Zampini     A          = product->B;
71214e84afc0SStefano Zampini     m          = P->cmap->n;
71224e84afc0SStefano Zampini     n          = A->cmap->n;
71234e84afc0SStefano Zampini     M          = P->cmap->N;
71244e84afc0SStefano Zampini     N          = A->cmap->N;
71254e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71264e84afc0SStefano Zampini     break;
71274e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
71284e84afc0SStefano Zampini     A          = product->A;
71294e84afc0SStefano Zampini     P          = product->B;
71304e84afc0SStefano Zampini     m          = P->cmap->n;
71314e84afc0SStefano Zampini     n          = P->cmap->n;
71324e84afc0SStefano Zampini     M          = P->cmap->N;
71334e84afc0SStefano Zampini     N          = P->cmap->N;
71344e84afc0SStefano Zampini     hasoffproc = PETSC_TRUE;
71354e84afc0SStefano Zampini     break;
7136d71ae5a4SJacob Faibussowitsch   default:
7137d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
71384e84afc0SStefano Zampini   }
71399566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size));
71404e84afc0SStefano Zampini   if (size == 1) hasoffproc = PETSC_FALSE;
71414e84afc0SStefano Zampini 
71424e84afc0SStefano Zampini   /* defaults */
71434e84afc0SStefano Zampini   for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) {
71444e84afc0SStefano Zampini     mp[i]    = NULL;
71454e84afc0SStefano Zampini     mptmp[i] = PETSC_FALSE;
71464e84afc0SStefano Zampini     rmapt[i] = -1;
71474e84afc0SStefano Zampini     cmapt[i] = -1;
71484e84afc0SStefano Zampini     rmapa[i] = NULL;
71494e84afc0SStefano Zampini     cmapa[i] = NULL;
71504e84afc0SStefano Zampini   }
71514e84afc0SStefano Zampini 
71524e84afc0SStefano Zampini   /* customization */
71539566063dSJacob Faibussowitsch   PetscCall(PetscNew(&mmdata));
71544e84afc0SStefano Zampini   mmdata->reusesym = product->api_user;
71554e84afc0SStefano Zampini   if (ptype == MATPRODUCT_AB) {
71564e84afc0SStefano Zampini     if (product->api_user) {
7157d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
71589566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71599566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7160d0609cedSBarry Smith       PetscOptionsEnd();
71614e84afc0SStefano Zampini     } else {
7162d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
71639566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL));
71649566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7165d0609cedSBarry Smith       PetscOptionsEnd();
7166abb89eb1SStefano Zampini     }
7167abb89eb1SStefano Zampini   } else if (ptype == MATPRODUCT_PtAP) {
7168abb89eb1SStefano Zampini     if (product->api_user) {
7169d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
71709566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7171d0609cedSBarry Smith       PetscOptionsEnd();
7172abb89eb1SStefano Zampini     } else {
7173d0609cedSBarry Smith       PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
71749566063dSJacob Faibussowitsch       PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL));
7175d0609cedSBarry Smith       PetscOptionsEnd();
71764e84afc0SStefano Zampini     }
71774e84afc0SStefano Zampini   }
71784e84afc0SStefano Zampini   a = (Mat_MPIAIJ *)A->data;
71794e84afc0SStefano Zampini   p = (Mat_MPIAIJ *)P->data;
71809566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, m, n, M, N));
71819566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->rmap));
71829566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(C->cmap));
71839566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, ((PetscObject)A)->type_name));
71849566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(C, &prefix));
7185ddea5d60SJunchao Zhang 
7186ddea5d60SJunchao Zhang   cp = 0;
71874e84afc0SStefano Zampini   switch (ptype) {
71884e84afc0SStefano Zampini   case MATPRODUCT_AB: /* A * P */
71899566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
71904e84afc0SStefano Zampini 
7191ddea5d60SJunchao Zhang     /* A_diag * P_local (merged or not) */
7192ddea5d60SJunchao Zhang     if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */
71934e84afc0SStefano Zampini       /* P is product->B */
71949566063dSJacob Faibussowitsch       PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
71959566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
71969566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
71979566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
71989566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
71999566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72009566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72014e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72029566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72039566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72049566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72054e84afc0SStefano Zampini       rmapt[cp] = 1;
72064e84afc0SStefano Zampini       cmapt[cp] = 2;
72074e84afc0SStefano Zampini       cmapa[cp] = globidx;
72084e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72094e84afc0SStefano Zampini       cp++;
7210ddea5d60SJunchao Zhang     } else { /* A_diag * P_diag and A_diag * P_off */
72119566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp]));
72129566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72139566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72149566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72159566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72169566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72174e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72189566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72199566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72204e84afc0SStefano Zampini       rmapt[cp] = 1;
72214e84afc0SStefano Zampini       cmapt[cp] = 1;
72224e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72234e84afc0SStefano Zampini       cp++;
72249566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp]));
72259566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72269566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72279566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72289566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72299566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72304e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72319566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72329566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72334e84afc0SStefano Zampini       rmapt[cp] = 1;
72344e84afc0SStefano Zampini       cmapt[cp] = 2;
72354e84afc0SStefano Zampini       cmapa[cp] = p->garray;
72364e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72374e84afc0SStefano Zampini       cp++;
72384e84afc0SStefano Zampini     }
7239ddea5d60SJunchao Zhang 
7240ddea5d60SJunchao Zhang     /* A_off * P_other */
72414e84afc0SStefano Zampini     if (mmdata->P_oth) {
72429566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */
72439566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7244f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
72459566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
72469566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
72479566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
72489566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72499566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72509566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72519566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72524e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72539566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72549566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72554e84afc0SStefano Zampini       rmapt[cp] = 1;
72564e84afc0SStefano Zampini       cmapt[cp] = 2;
72574e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
72584e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72594e84afc0SStefano Zampini       cp++;
72604e84afc0SStefano Zampini     }
72614e84afc0SStefano Zampini     break;
7262ddea5d60SJunchao Zhang 
72634e84afc0SStefano Zampini   case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */
72644e84afc0SStefano Zampini     /* A is product->B */
72659566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
7266ddea5d60SJunchao Zhang     if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */
72679566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp]));
72689566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
72699566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72709566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72719566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72729566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72734e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72749566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72759566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72769566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72774e84afc0SStefano Zampini       rmapt[cp] = 2;
72784e84afc0SStefano Zampini       rmapa[cp] = globidx;
72794e84afc0SStefano Zampini       cmapt[cp] = 2;
72804e84afc0SStefano Zampini       cmapa[cp] = globidx;
72814e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72824e84afc0SStefano Zampini       cp++;
72834e84afc0SStefano Zampini     } else {
72849566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp]));
72859566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
72869566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
72879566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
72889566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
72899566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
72904e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
72919566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
72929566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
72939566063dSJacob Faibussowitsch       PetscCall(ISGetIndices(glob, &globidx));
72944e84afc0SStefano Zampini       rmapt[cp] = 1;
72954e84afc0SStefano Zampini       cmapt[cp] = 2;
72964e84afc0SStefano Zampini       cmapa[cp] = globidx;
72974e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
72984e84afc0SStefano Zampini       cp++;
72999566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp]));
73009566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73019566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73029566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73039566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73049566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73054e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73069566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73079566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73084e84afc0SStefano Zampini       rmapt[cp] = 2;
73094e84afc0SStefano Zampini       rmapa[cp] = p->garray;
73104e84afc0SStefano Zampini       cmapt[cp] = 2;
73114e84afc0SStefano Zampini       cmapa[cp] = globidx;
73124e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73134e84afc0SStefano Zampini       cp++;
73144e84afc0SStefano Zampini     }
73154e84afc0SStefano Zampini     break;
73164e84afc0SStefano Zampini   case MATPRODUCT_PtAP:
73179566063dSJacob Faibussowitsch     PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth));
73184e84afc0SStefano Zampini     /* P is product->B */
73199566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc));
73209566063dSJacob Faibussowitsch     PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp]));
73219566063dSJacob Faibussowitsch     PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP));
73229566063dSJacob Faibussowitsch     PetscCall(MatProductSetFill(mp[cp], product->fill));
73239566063dSJacob Faibussowitsch     PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73249566063dSJacob Faibussowitsch     PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73259566063dSJacob Faibussowitsch     PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73264e84afc0SStefano Zampini     mp[cp]->product->api_user = product->api_user;
73279566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions(mp[cp]));
73289566063dSJacob Faibussowitsch     PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73299566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(glob, &globidx));
73304e84afc0SStefano Zampini     rmapt[cp] = 2;
73314e84afc0SStefano Zampini     rmapa[cp] = globidx;
73324e84afc0SStefano Zampini     cmapt[cp] = 2;
73334e84afc0SStefano Zampini     cmapa[cp] = globidx;
73344e84afc0SStefano Zampini     mptmp[cp] = PETSC_FALSE;
73354e84afc0SStefano Zampini     cp++;
73364e84afc0SStefano Zampini     if (mmdata->P_oth) {
73379566063dSJacob Faibussowitsch       PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g));
73389566063dSJacob Faibussowitsch       PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx));
7339f4f49eeaSPierre Jolivet       PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name));
73409566063dSJacob Faibussowitsch       PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind));
73419566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp]));
73429566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB));
73439566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73449566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73459566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73469566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73474e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73489566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73499566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73504e84afc0SStefano Zampini       mptmp[cp] = PETSC_TRUE;
73514e84afc0SStefano Zampini       cp++;
73529566063dSJacob Faibussowitsch       PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp]));
73539566063dSJacob Faibussowitsch       PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB));
73549566063dSJacob Faibussowitsch       PetscCall(MatProductSetFill(mp[cp], product->fill));
73559566063dSJacob Faibussowitsch       PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp));
73569566063dSJacob Faibussowitsch       PetscCall(MatSetOptionsPrefix(mp[cp], prefix));
73579566063dSJacob Faibussowitsch       PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix));
73584e84afc0SStefano Zampini       mp[cp]->product->api_user = product->api_user;
73599566063dSJacob Faibussowitsch       PetscCall(MatProductSetFromOptions(mp[cp]));
73609566063dSJacob Faibussowitsch       PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp]));
73614e84afc0SStefano Zampini       rmapt[cp] = 2;
73624e84afc0SStefano Zampini       rmapa[cp] = globidx;
73634e84afc0SStefano Zampini       cmapt[cp] = 2;
73644e84afc0SStefano Zampini       cmapa[cp] = P_oth_idx;
73654e84afc0SStefano Zampini       mptmp[cp] = PETSC_FALSE;
73664e84afc0SStefano Zampini       cp++;
73674e84afc0SStefano Zampini     }
73684e84afc0SStefano Zampini     break;
7369d71ae5a4SJacob Faibussowitsch   default:
7370d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]);
73714e84afc0SStefano Zampini   }
73724e84afc0SStefano Zampini   /* sanity check */
73739371c9d4SSatish Balay   if (size > 1)
73749371c9d4SSatish Balay     for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i);
73754e84afc0SStefano Zampini 
73769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp));
7377ddea5d60SJunchao Zhang   for (i = 0; i < cp; i++) {
7378ddea5d60SJunchao Zhang     mmdata->mp[i]    = mp[i];
7379ddea5d60SJunchao Zhang     mmdata->mptmp[i] = mptmp[i];
7380ddea5d60SJunchao Zhang   }
73814e84afc0SStefano Zampini   mmdata->cp             = cp;
73824e84afc0SStefano Zampini   C->product->data       = mmdata;
7383cc1eb50dSBarry Smith   C->product->destroy    = MatProductCtxDestroy_MatMatMPIAIJBACKEND;
73844e84afc0SStefano Zampini   C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND;
73854e84afc0SStefano Zampini 
7386c215019aSStefano Zampini   /* memory type */
7387c215019aSStefano Zampini   mmdata->mtype = PETSC_MEMTYPE_HOST;
73889566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, ""));
7389d5e393b6SSuyash Tandon   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, ""));
73909566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, ""));
7391c215019aSStefano Zampini   if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA;
7392d5e393b6SSuyash Tandon   else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP;
73933214990dSStefano Zampini   else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS;
7394c215019aSStefano Zampini 
73954e84afc0SStefano Zampini   /* prepare coo coordinates for values insertion */
7396ddea5d60SJunchao Zhang 
7397ddea5d60SJunchao Zhang   /* count total nonzeros of those intermediate seqaij Mats
7398ddea5d60SJunchao Zhang     ncoo_d:    # of nonzeros of matrices that do not have offproc entries
7399ddea5d60SJunchao Zhang     ncoo_o:    # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs
7400ddea5d60SJunchao Zhang     ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally
7401ddea5d60SJunchao Zhang   */
74024e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) {
74034e84afc0SStefano Zampini     Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data;
74044e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7405ddea5d60SJunchao Zhang     if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */
74064e84afc0SStefano Zampini       const PetscInt *rmap = rmapa[cp];
74074e84afc0SStefano Zampini       const PetscInt  mr   = mp[cp]->rmap->n;
74084e84afc0SStefano Zampini       const PetscInt  rs   = C->rmap->rstart;
74094e84afc0SStefano Zampini       const PetscInt  re   = C->rmap->rend;
74104e84afc0SStefano Zampini       const PetscInt *ii   = mm->i;
74114e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
74124e84afc0SStefano Zampini         const PetscInt gr = rmap[i];
74134e84afc0SStefano Zampini         const PetscInt nz = ii[i + 1] - ii[i];
7414ddea5d60SJunchao Zhang         if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */
7415ddea5d60SJunchao Zhang         else ncoo_oown += nz;                  /* this row is local */
74164e84afc0SStefano Zampini       }
74174e84afc0SStefano Zampini     } else ncoo_d += mm->nz;
74184e84afc0SStefano Zampini   }
7419ddea5d60SJunchao Zhang 
7420ddea5d60SJunchao Zhang   /*
7421ddea5d60SJunchao Zhang     ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc
7422ddea5d60SJunchao Zhang 
7423ddea5d60SJunchao Zhang     ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs.
7424ddea5d60SJunchao Zhang 
7425d5b43468SJose E. Roman     off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0].
7426ddea5d60SJunchao Zhang 
7427ddea5d60SJunchao Zhang     off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others
7428ddea5d60SJunchao Zhang     own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally
7429ddea5d60SJunchao Zhang     so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others.
7430ddea5d60SJunchao Zhang 
7431ddea5d60SJunchao Zhang     coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc.
7432da81f932SPierre Jolivet     Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive.
7433ddea5d60SJunchao Zhang   */
74349566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */
74359566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own));
7436ddea5d60SJunchao Zhang 
7437ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted by remote procs */
7438ddea5d60SJunchao Zhang   if (hasoffproc) {
74394e84afc0SStefano Zampini     PetscSF  msf;
74404e84afc0SStefano Zampini     PetscInt ncoo2, *coo_i2, *coo_j2;
74414e84afc0SStefano Zampini 
74429566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0]));
74439566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0]));
74449566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */
7445ddea5d60SJunchao Zhang 
74464e84afc0SStefano Zampini     for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) {
74474e84afc0SStefano Zampini       Mat_SeqAIJ *mm     = (Mat_SeqAIJ *)mp[cp]->data;
74484e84afc0SStefano Zampini       PetscInt   *idxoff = mmdata->off[cp];
74494e84afc0SStefano Zampini       PetscInt   *idxown = mmdata->own[cp];
7450ddea5d60SJunchao Zhang       if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */
74514e84afc0SStefano Zampini         const PetscInt *rmap = rmapa[cp];
74524e84afc0SStefano Zampini         const PetscInt *cmap = cmapa[cp];
74534e84afc0SStefano Zampini         const PetscInt *ii   = mm->i;
74544e84afc0SStefano Zampini         PetscInt       *coi  = coo_i + ncoo_o;
74554e84afc0SStefano Zampini         PetscInt       *coj  = coo_j + ncoo_o;
74564e84afc0SStefano Zampini         const PetscInt  mr   = mp[cp]->rmap->n;
74574e84afc0SStefano Zampini         const PetscInt  rs   = C->rmap->rstart;
74584e84afc0SStefano Zampini         const PetscInt  re   = C->rmap->rend;
74594e84afc0SStefano Zampini         const PetscInt  cs   = C->cmap->rstart;
74604e84afc0SStefano Zampini         for (i = 0; i < mr; i++) {
74614e84afc0SStefano Zampini           const PetscInt *jj = mm->j + ii[i];
74624e84afc0SStefano Zampini           const PetscInt  gr = rmap[i];
74634e84afc0SStefano Zampini           const PetscInt  nz = ii[i + 1] - ii[i];
7464ddea5d60SJunchao Zhang           if (gr < rs || gr >= re) { /* this is an offproc row */
74654e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) {
74664e84afc0SStefano Zampini               *coi++    = gr;
74674e84afc0SStefano Zampini               *idxoff++ = j;
74684e84afc0SStefano Zampini             }
74694e84afc0SStefano Zampini             if (!cmapt[cp]) { /* already global */
74704e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j];
74714e84afc0SStefano Zampini             } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
74724e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
74734e84afc0SStefano Zampini             } else { /* offdiag */
74744e84afc0SStefano Zampini               for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
74754e84afc0SStefano Zampini             }
74764e84afc0SStefano Zampini             ncoo_o += nz;
7477ddea5d60SJunchao Zhang           } else { /* this is a local row */
74784e84afc0SStefano Zampini             for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j;
74794e84afc0SStefano Zampini           }
74804e84afc0SStefano Zampini         }
74814e84afc0SStefano Zampini       }
74824e84afc0SStefano Zampini       mmdata->off[cp + 1] = idxoff;
74834e84afc0SStefano Zampini       mmdata->own[cp + 1] = idxown;
74844e84afc0SStefano Zampini     }
74854e84afc0SStefano Zampini 
74869566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
74876497c311SBarry Smith     PetscInt incoo_o;
74886497c311SBarry Smith     PetscCall(PetscIntCast(ncoo_o, &incoo_o));
74896497c311SBarry Smith     PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i));
74909566063dSJacob Faibussowitsch     PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf));
74919566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL));
74924e84afc0SStefano Zampini     ncoo = ncoo_d + ncoo_oown + ncoo2;
74939566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2));
74949566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */
74959566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown));
74969566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
74979566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown));
74989566063dSJacob Faibussowitsch     PetscCall(PetscFree2(coo_i, coo_j));
7499ddea5d60SJunchao Zhang     /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */
75009566063dSJacob Faibussowitsch     PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w));
75014e84afc0SStefano Zampini     coo_i = coo_i2;
75024e84afc0SStefano Zampini     coo_j = coo_j2;
75034e84afc0SStefano Zampini   } else { /* no offproc values insertion */
75044e84afc0SStefano Zampini     ncoo = ncoo_d;
75059566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j));
7506c215019aSStefano Zampini 
75079566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf));
75089566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
75099566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(mmdata->sf));
75104e84afc0SStefano Zampini   }
7511c215019aSStefano Zampini   mmdata->hasoffproc = hasoffproc;
75124e84afc0SStefano Zampini 
7513ddea5d60SJunchao Zhang   /* gather (i,j) of nonzeros inserted locally */
75144e84afc0SStefano Zampini   for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) {
75154e84afc0SStefano Zampini     Mat_SeqAIJ     *mm   = (Mat_SeqAIJ *)mp[cp]->data;
75164e84afc0SStefano Zampini     PetscInt       *coi  = coo_i + ncoo_d;
75174e84afc0SStefano Zampini     PetscInt       *coj  = coo_j + ncoo_d;
75184e84afc0SStefano Zampini     const PetscInt *jj   = mm->j;
75194e84afc0SStefano Zampini     const PetscInt *ii   = mm->i;
75204e84afc0SStefano Zampini     const PetscInt *cmap = cmapa[cp];
75214e84afc0SStefano Zampini     const PetscInt *rmap = rmapa[cp];
75224e84afc0SStefano Zampini     const PetscInt  mr   = mp[cp]->rmap->n;
75234e84afc0SStefano Zampini     const PetscInt  rs   = C->rmap->rstart;
75244e84afc0SStefano Zampini     const PetscInt  re   = C->rmap->rend;
75254e84afc0SStefano Zampini     const PetscInt  cs   = C->cmap->rstart;
75264e84afc0SStefano Zampini 
75274e84afc0SStefano Zampini     if (mptmp[cp]) continue;
7528ddea5d60SJunchao Zhang     if (rmapt[cp] == 1) { /* consecutive rows */
7529ddea5d60SJunchao Zhang       /* fill coo_i */
75304e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75314e84afc0SStefano Zampini         const PetscInt gr = i + rs;
75324e84afc0SStefano Zampini         for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr;
75334e84afc0SStefano Zampini       }
7534ddea5d60SJunchao Zhang       /* fill coo_j */
7535ddea5d60SJunchao Zhang       if (!cmapt[cp]) { /* type-0, already global */
75369566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(coj, jj, mm->nz));
7537ddea5d60SJunchao Zhang       } else if (cmapt[cp] == 1) {                        /* type-1, local to global for consecutive columns of C */
7538ddea5d60SJunchao Zhang         for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */
7539ddea5d60SJunchao Zhang       } else {                                            /* type-2, local to global for sparse columns */
75404e84afc0SStefano Zampini         for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]];
75414e84afc0SStefano Zampini       }
75424e84afc0SStefano Zampini       ncoo_d += mm->nz;
7543ddea5d60SJunchao Zhang     } else if (rmapt[cp] == 2) { /* sparse rows */
75444e84afc0SStefano Zampini       for (i = 0; i < mr; i++) {
75454e84afc0SStefano Zampini         const PetscInt *jj = mm->j + ii[i];
75464e84afc0SStefano Zampini         const PetscInt  gr = rmap[i];
75474e84afc0SStefano Zampini         const PetscInt  nz = ii[i + 1] - ii[i];
7548ddea5d60SJunchao Zhang         if (gr >= rs && gr < re) { /* local rows */
75494e84afc0SStefano Zampini           for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr;
7550ddea5d60SJunchao Zhang           if (!cmapt[cp]) { /* type-0, already global */
75514e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j];
75524e84afc0SStefano Zampini           } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */
75534e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = jj[j] + cs;
7554ddea5d60SJunchao Zhang           } else { /* type-2, local to global for sparse columns */
75554e84afc0SStefano Zampini             for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]];
75564e84afc0SStefano Zampini           }
75574e84afc0SStefano Zampini           ncoo_d += nz;
75584e84afc0SStefano Zampini         }
75594e84afc0SStefano Zampini       }
75604e84afc0SStefano Zampini     }
75614e84afc0SStefano Zampini   }
756248a46eb9SPierre Jolivet   if (glob) PetscCall(ISRestoreIndices(glob, &globidx));
75639566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&glob));
756448a46eb9SPierre Jolivet   if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx));
75659566063dSJacob Faibussowitsch   PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g));
7566ddea5d60SJunchao Zhang   /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */
75679566063dSJacob Faibussowitsch   PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v));
75684e84afc0SStefano Zampini 
756939cfb508SMark Adams   /* set block sizes */
757039cfb508SMark Adams   A = product->A;
757139cfb508SMark Adams   P = product->B;
757239cfb508SMark Adams   switch (ptype) {
757339cfb508SMark Adams   case MATPRODUCT_PtAP:
757458b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs));
757539cfb508SMark Adams     break;
757639cfb508SMark Adams   case MATPRODUCT_RARt:
757758b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs));
757839cfb508SMark Adams     break;
757939cfb508SMark Adams   case MATPRODUCT_ABC:
758039cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, product->C));
758139cfb508SMark Adams     break;
758239cfb508SMark Adams   case MATPRODUCT_AB:
758339cfb508SMark Adams     PetscCall(MatSetBlockSizesFromMats(C, A, P));
758439cfb508SMark Adams     break;
758539cfb508SMark Adams   case MATPRODUCT_AtB:
758658b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs));
758739cfb508SMark Adams     break;
758839cfb508SMark Adams   case MATPRODUCT_ABt:
758958b7e2c1SStefano Zampini     PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs));
759039cfb508SMark Adams     break;
759139cfb508SMark Adams   default:
759239cfb508SMark Adams     SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]);
759339cfb508SMark Adams   }
759439cfb508SMark Adams 
75954e84afc0SStefano Zampini   /* preallocate with COO data */
75969566063dSJacob Faibussowitsch   PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j));
75979566063dSJacob Faibussowitsch   PetscCall(PetscFree2(coo_i, coo_j));
75983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
75994e84afc0SStefano Zampini }
76004e84afc0SStefano Zampini 
7601d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat)
7602d71ae5a4SJacob Faibussowitsch {
76034e84afc0SStefano Zampini   Mat_Product *product = mat->product;
76044e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
76054e84afc0SStefano Zampini   PetscBool match  = PETSC_FALSE;
7606abb89eb1SStefano Zampini   PetscBool usecpu = PETSC_FALSE;
76074e84afc0SStefano Zampini #else
76084e84afc0SStefano Zampini   PetscBool match = PETSC_TRUE;
76094e84afc0SStefano Zampini #endif
76104e84afc0SStefano Zampini 
76114e84afc0SStefano Zampini   PetscFunctionBegin;
76124e84afc0SStefano Zampini   MatCheckProduct(mat, 1);
76134e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
761448a46eb9SPierre Jolivet   if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match));
761565e4b4d4SStefano Zampini   if (match) { /* we can always fallback to the CPU if requested */
7616abb89eb1SStefano Zampini     switch (product->type) {
7617abb89eb1SStefano Zampini     case MATPRODUCT_AB:
7618abb89eb1SStefano Zampini       if (product->api_user) {
7619d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat");
76209566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7621d0609cedSBarry Smith         PetscOptionsEnd();
7622abb89eb1SStefano Zampini       } else {
7623d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat");
76249566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL));
7625d0609cedSBarry Smith         PetscOptionsEnd();
7626abb89eb1SStefano Zampini       }
7627abb89eb1SStefano Zampini       break;
7628abb89eb1SStefano Zampini     case MATPRODUCT_AtB:
7629abb89eb1SStefano Zampini       if (product->api_user) {
7630d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat");
76319566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7632d0609cedSBarry Smith         PetscOptionsEnd();
7633abb89eb1SStefano Zampini       } else {
7634d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat");
76359566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL));
7636d0609cedSBarry Smith         PetscOptionsEnd();
7637abb89eb1SStefano Zampini       }
7638abb89eb1SStefano Zampini       break;
7639abb89eb1SStefano Zampini     case MATPRODUCT_PtAP:
7640abb89eb1SStefano Zampini       if (product->api_user) {
7641d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat");
76429566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7643d0609cedSBarry Smith         PetscOptionsEnd();
7644abb89eb1SStefano Zampini       } else {
7645d0609cedSBarry Smith         PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat");
76469566063dSJacob Faibussowitsch         PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL));
7647d0609cedSBarry Smith         PetscOptionsEnd();
7648abb89eb1SStefano Zampini       }
7649abb89eb1SStefano Zampini       break;
7650d71ae5a4SJacob Faibussowitsch     default:
7651d71ae5a4SJacob Faibussowitsch       break;
7652abb89eb1SStefano Zampini     }
7653abb89eb1SStefano Zampini     match = (PetscBool)!usecpu;
7654abb89eb1SStefano Zampini   }
76554e84afc0SStefano Zampini #endif
76564e84afc0SStefano Zampini   if (match) {
76574e84afc0SStefano Zampini     switch (product->type) {
76584e84afc0SStefano Zampini     case MATPRODUCT_AB:
76594e84afc0SStefano Zampini     case MATPRODUCT_AtB:
7660d71ae5a4SJacob Faibussowitsch     case MATPRODUCT_PtAP:
7661d71ae5a4SJacob Faibussowitsch       mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND;
7662d71ae5a4SJacob Faibussowitsch       break;
7663d71ae5a4SJacob Faibussowitsch     default:
7664d71ae5a4SJacob Faibussowitsch       break;
76654e84afc0SStefano Zampini     }
76664e84afc0SStefano Zampini   }
76674e84afc0SStefano Zampini   /* fallback to MPIAIJ ops */
76689566063dSJacob Faibussowitsch   if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat));
76693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
767081824310SBarry Smith }
767198921bdaSJacob Faibussowitsch 
767298921bdaSJacob Faibussowitsch /*
767372833a62Smarkadams4    Produces a set of block column indices of the matrix row, one for each block represented in the original row
767472833a62Smarkadams4 
767572833a62Smarkadams4    n - the number of block indices in cc[]
767672833a62Smarkadams4    cc - the block indices (must be large enough to contain the indices)
767772833a62Smarkadams4 */
7678d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc)
7679d71ae5a4SJacob Faibussowitsch {
768072833a62Smarkadams4   PetscInt        cnt = -1, nidx, j;
768172833a62Smarkadams4   const PetscInt *idx;
768272833a62Smarkadams4 
768372833a62Smarkadams4   PetscFunctionBegin;
768472833a62Smarkadams4   PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL));
768572833a62Smarkadams4   if (nidx) {
768672833a62Smarkadams4     cnt     = 0;
768772833a62Smarkadams4     cc[cnt] = idx[0] / bs;
768872833a62Smarkadams4     for (j = 1; j < nidx; j++) {
768972833a62Smarkadams4       if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs;
769072833a62Smarkadams4     }
769172833a62Smarkadams4   }
769272833a62Smarkadams4   PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL));
769372833a62Smarkadams4   *n = cnt + 1;
76943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
769572833a62Smarkadams4 }
769672833a62Smarkadams4 
769772833a62Smarkadams4 /*
769872833a62Smarkadams4     Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows
769972833a62Smarkadams4 
770072833a62Smarkadams4     ncollapsed - the number of block indices
770172833a62Smarkadams4     collapsed - the block indices (must be large enough to contain the indices)
770272833a62Smarkadams4 */
7703d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed)
7704d71ae5a4SJacob Faibussowitsch {
770572833a62Smarkadams4   PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp;
770672833a62Smarkadams4 
770772833a62Smarkadams4   PetscFunctionBegin;
770872833a62Smarkadams4   PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev));
770972833a62Smarkadams4   for (i = start + 1; i < start + bs; i++) {
771072833a62Smarkadams4     PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur));
771172833a62Smarkadams4     PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged));
77129371c9d4SSatish Balay     cprevtmp = cprev;
77139371c9d4SSatish Balay     cprev    = merged;
77149371c9d4SSatish Balay     merged   = cprevtmp;
771572833a62Smarkadams4   }
771672833a62Smarkadams4   *ncollapsed = nprev;
771772833a62Smarkadams4   if (collapsed) *collapsed = cprev;
77183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771972833a62Smarkadams4 }
772072833a62Smarkadams4 
77212d776b49SBarry Smith /*
772272833a62Smarkadams4  MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix
772372833a62Smarkadams4 
772472833a62Smarkadams4  Input Parameter:
772572833a62Smarkadams4  . Amat - matrix
772672833a62Smarkadams4  - symmetrize - make the result symmetric
772772833a62Smarkadams4  + scale - scale with diagonal
772872833a62Smarkadams4 
772972833a62Smarkadams4  Output Parameter:
773072833a62Smarkadams4  . a_Gmat - output scalar graph >= 0
773172833a62Smarkadams4 
773272833a62Smarkadams4 */
7733e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat)
7734d71ae5a4SJacob Faibussowitsch {
773572833a62Smarkadams4   PetscInt  Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs;
773672833a62Smarkadams4   MPI_Comm  comm;
773772833a62Smarkadams4   Mat       Gmat;
773872833a62Smarkadams4   PetscBool ismpiaij, isseqaij;
773972833a62Smarkadams4   Mat       a, b, c;
774072833a62Smarkadams4   MatType   jtype;
774172833a62Smarkadams4 
774272833a62Smarkadams4   PetscFunctionBegin;
774372833a62Smarkadams4   PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm));
774472833a62Smarkadams4   PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend));
774572833a62Smarkadams4   PetscCall(MatGetSize(Amat, &MM, &NN));
774672833a62Smarkadams4   PetscCall(MatGetBlockSize(Amat, &bs));
774772833a62Smarkadams4   nloc = (Iend - Istart) / bs;
774872833a62Smarkadams4 
774972833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij));
775072833a62Smarkadams4   PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij));
775172833a62Smarkadams4   PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type");
775272833a62Smarkadams4 
775372833a62Smarkadams4   /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */
775472833a62Smarkadams4   /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast
775572833a62Smarkadams4      implementation */
775672833a62Smarkadams4   if (bs > 1) {
775772833a62Smarkadams4     PetscCall(MatGetType(Amat, &jtype));
775872833a62Smarkadams4     PetscCall(MatCreate(comm, &Gmat));
775972833a62Smarkadams4     PetscCall(MatSetType(Gmat, jtype));
776072833a62Smarkadams4     PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE));
776172833a62Smarkadams4     PetscCall(MatSetBlockSizes(Gmat, 1, 1));
776272833a62Smarkadams4     if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) {
776372833a62Smarkadams4       PetscInt  *d_nnz, *o_nnz;
77642cf69117Smarkadams4       MatScalar *aa, val, *AA;
77652cf69117Smarkadams4       PetscInt  *aj, *ai, *AJ, nc, nmax = 0;
77666497c311SBarry Smith 
77679371c9d4SSatish Balay       if (isseqaij) {
77689371c9d4SSatish Balay         a = Amat;
77699371c9d4SSatish Balay         b = NULL;
77709371c9d4SSatish Balay       } else {
777172833a62Smarkadams4         Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data;
77729371c9d4SSatish Balay         a             = d->A;
77739371c9d4SSatish Balay         b             = d->B;
777472833a62Smarkadams4       }
777572833a62Smarkadams4       PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc));
777632603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
777772833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
77782cf69117Smarkadams4         PetscInt       *nnz = (c == a) ? d_nnz : o_nnz;
777959ee9f9fSPierre Jolivet         const PetscInt *cols1, *cols2;
77806497c311SBarry Smith 
778159ee9f9fSPierre Jolivet         for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows
778259ee9f9fSPierre Jolivet           PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL));
778359ee9f9fSPierre Jolivet           nnz[brow / bs] = nc2 / bs;
778459ee9f9fSPierre Jolivet           if (nc2 % bs) ok = 0;
778572833a62Smarkadams4           if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs];
778659ee9f9fSPierre Jolivet           for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks
778759ee9f9fSPierre Jolivet             PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL));
778859ee9f9fSPierre Jolivet             if (nc1 != nc2) ok = 0;
778959ee9f9fSPierre Jolivet             else {
779059ee9f9fSPierre Jolivet               for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) {
779159ee9f9fSPierre Jolivet                 if (cols1[jj] != cols2[jj]) ok = 0;
779259ee9f9fSPierre Jolivet                 if (cols1[jj] % bs != jj % bs) ok = 0;
779372833a62Smarkadams4               }
779459ee9f9fSPierre Jolivet             }
779559ee9f9fSPierre Jolivet             PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL));
779659ee9f9fSPierre Jolivet           }
779759ee9f9fSPierre Jolivet           PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL));
779872833a62Smarkadams4           if (!ok) {
779972833a62Smarkadams4             PetscCall(PetscFree2(d_nnz, o_nnz));
780059ee9f9fSPierre Jolivet             PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n"));
780172833a62Smarkadams4             goto old_bs;
780272833a62Smarkadams4           }
780372833a62Smarkadams4         }
780472833a62Smarkadams4       }
780572833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
780672833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
780772833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
78082cf69117Smarkadams4       PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ));
780972833a62Smarkadams4       // diag
781072833a62Smarkadams4       for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows
781172833a62Smarkadams4         Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data;
78126497c311SBarry Smith 
781372833a62Smarkadams4         ai = aseq->i;
781472833a62Smarkadams4         n  = ai[brow + 1] - ai[brow];
781572833a62Smarkadams4         aj = aseq->j + ai[brow];
78166497c311SBarry Smith         for (PetscInt k = 0; k < n; k += bs) {   // block columns
781772833a62Smarkadams4           AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart)
781872833a62Smarkadams4           val        = 0;
7819e02fb3cdSMark Adams           if (index_size == 0) {
78206497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
782172833a62Smarkadams4               aa = aseq->a + ai[brow + ii] + k;
78226497c311SBarry Smith               for (PetscInt jj = 0; jj < bs; jj++) {    // columns in block
782372833a62Smarkadams4                 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm
782472833a62Smarkadams4               }
782572833a62Smarkadams4             }
7826e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78276497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78286497c311SBarry Smith               PetscInt ii = index[iii];
7829e02fb3cdSMark Adams               aa          = aseq->a + ai[brow + ii] + k;
78306497c311SBarry Smith               for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block
78316497c311SBarry Smith                 PetscInt jj = index[jjj];
7832cd5bc9d0SMark Adams                 val += PetscAbs(PetscRealPart(aa[jj]));
7833e02fb3cdSMark Adams               }
7834e02fb3cdSMark Adams             }
7835e02fb3cdSMark Adams           }
7836835f2295SStefano Zampini           PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
783772833a62Smarkadams4           AA[k / bs] = val;
783872833a62Smarkadams4         }
783972833a62Smarkadams4         grow = Istart / bs + brow / bs;
784066521e1fSMark Adams         PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES));
784172833a62Smarkadams4       }
784272833a62Smarkadams4       // off-diag
784372833a62Smarkadams4       if (ismpiaij) {
784472833a62Smarkadams4         Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)Amat->data;
784572833a62Smarkadams4         const PetscScalar *vals;
784672833a62Smarkadams4         const PetscInt    *cols, *garray = aij->garray;
78476497c311SBarry Smith 
784872833a62Smarkadams4         PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?");
784972833a62Smarkadams4         for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows
785072833a62Smarkadams4           PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL));
78516497c311SBarry Smith           for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) {
785259ee9f9fSPierre Jolivet             PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax");
785372833a62Smarkadams4             AA[k / bs] = 0;
785472833a62Smarkadams4             AJ[cidx]   = garray[cols[k]] / bs;
785572833a62Smarkadams4           }
785672833a62Smarkadams4           nc = ncols / bs;
785772833a62Smarkadams4           PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL));
7858e02fb3cdSMark Adams           if (index_size == 0) {
78596497c311SBarry Smith             for (PetscInt ii = 0; ii < bs; ii++) { // rows in block
786072833a62Smarkadams4               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
78616497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
78626497c311SBarry Smith                 for (PetscInt jj = 0; jj < bs; jj++) { // cols in block
7863835f2295SStefano Zampini                   PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax);
786472833a62Smarkadams4                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
786572833a62Smarkadams4                 }
786672833a62Smarkadams4               }
786772833a62Smarkadams4               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
786872833a62Smarkadams4             }
7869e02fb3cdSMark Adams           } else {                                            // use (index,index) value if provided
78706497c311SBarry Smith             for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block
78716497c311SBarry Smith               PetscInt ii = index[iii];
7872e02fb3cdSMark Adams               PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals));
78736497c311SBarry Smith               for (PetscInt k = 0; k < ncols; k += bs) {
78746497c311SBarry Smith                 for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block
78756497c311SBarry Smith                   PetscInt jj = index[jjj];
7876e02fb3cdSMark Adams                   AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj]));
7877e02fb3cdSMark Adams                 }
7878e02fb3cdSMark Adams               }
7879e02fb3cdSMark Adams               PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals));
7880e02fb3cdSMark Adams             }
7881e02fb3cdSMark Adams           }
788272833a62Smarkadams4           grow = Istart / bs + brow / bs;
788366521e1fSMark Adams           PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES));
788472833a62Smarkadams4         }
788572833a62Smarkadams4       }
788672833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
788772833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
78882cf69117Smarkadams4       PetscCall(PetscFree2(AA, AJ));
788972833a62Smarkadams4     } else {
789072833a62Smarkadams4       const PetscScalar *vals;
789172833a62Smarkadams4       const PetscInt    *idx;
789272833a62Smarkadams4       PetscInt          *d_nnz, *o_nnz, *w0, *w1, *w2;
789372833a62Smarkadams4     old_bs:
789472833a62Smarkadams4       /*
789572833a62Smarkadams4        Determine the preallocation needed for the scalar matrix derived from the vector matrix.
789672833a62Smarkadams4        */
789772833a62Smarkadams4       PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n"));
789832603206SJames Wright       PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz));
789972833a62Smarkadams4       if (isseqaij) {
790072833a62Smarkadams4         PetscInt max_d_nnz;
79016497c311SBarry Smith 
790272833a62Smarkadams4         /*
790372833a62Smarkadams4          Determine exact preallocation count for (sequential) scalar matrix
790472833a62Smarkadams4          */
790572833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz));
790672833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
790772833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
790848a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
790972833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
791072833a62Smarkadams4       } else if (ismpiaij) {
791172833a62Smarkadams4         Mat             Daij, Oaij;
791272833a62Smarkadams4         const PetscInt *garray;
791372833a62Smarkadams4         PetscInt        max_d_nnz;
79146497c311SBarry Smith 
791572833a62Smarkadams4         PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray));
791672833a62Smarkadams4         /*
791772833a62Smarkadams4          Determine exact preallocation count for diagonal block portion of scalar matrix
791872833a62Smarkadams4          */
791972833a62Smarkadams4         PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz));
792072833a62Smarkadams4         max_d_nnz = PetscMin(nloc, bs * max_d_nnz);
792172833a62Smarkadams4         PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2));
792248a46eb9SPierre Jolivet         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL));
792372833a62Smarkadams4         PetscCall(PetscFree3(w0, w1, w2));
792472833a62Smarkadams4         /*
792572833a62Smarkadams4          Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix
792672833a62Smarkadams4          */
792772833a62Smarkadams4         for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) {
792872833a62Smarkadams4           o_nnz[jj] = 0;
792972833a62Smarkadams4           for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */
793072833a62Smarkadams4             PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL));
793172833a62Smarkadams4             o_nnz[jj] += ncols;
793272833a62Smarkadams4             PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL));
793372833a62Smarkadams4           }
793472833a62Smarkadams4           if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc;
793572833a62Smarkadams4         }
793672833a62Smarkadams4       } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type");
793772833a62Smarkadams4       /* get scalar copy (norms) of matrix */
793872833a62Smarkadams4       PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz));
793972833a62Smarkadams4       PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz));
794072833a62Smarkadams4       PetscCall(PetscFree2(d_nnz, o_nnz));
794172833a62Smarkadams4       for (Ii = Istart; Ii < Iend; Ii++) {
794272833a62Smarkadams4         PetscInt dest_row = Ii / bs;
79436497c311SBarry Smith 
794472833a62Smarkadams4         PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals));
794572833a62Smarkadams4         for (jj = 0; jj < ncols; jj++) {
794672833a62Smarkadams4           PetscInt    dest_col = idx[jj] / bs;
794772833a62Smarkadams4           PetscScalar sv       = PetscAbs(PetscRealPart(vals[jj]));
79486497c311SBarry Smith 
794972833a62Smarkadams4           PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES));
795072833a62Smarkadams4         }
795172833a62Smarkadams4         PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals));
795272833a62Smarkadams4       }
795372833a62Smarkadams4       PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY));
795472833a62Smarkadams4       PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY));
795572833a62Smarkadams4     }
795672833a62Smarkadams4   } else {
79572d776b49SBarry Smith     if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat));
79582d776b49SBarry Smith     else {
79592d776b49SBarry Smith       Gmat = Amat;
79602d776b49SBarry Smith       PetscCall(PetscObjectReference((PetscObject)Gmat));
79612d776b49SBarry Smith     }
79629371c9d4SSatish Balay     if (isseqaij) {
79639371c9d4SSatish Balay       a = Gmat;
79649371c9d4SSatish Balay       b = NULL;
79659371c9d4SSatish Balay     } else {
796672833a62Smarkadams4       Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data;
79679371c9d4SSatish Balay       a             = d->A;
79689371c9d4SSatish Balay       b             = d->B;
796972833a62Smarkadams4     }
79702d776b49SBarry Smith     if (filter >= 0 || scale) {
79712d776b49SBarry Smith       /* take absolute value of each entry */
797272833a62Smarkadams4       for (c = a, kk = 0; c && kk < 2; c = b, kk++) {
797372833a62Smarkadams4         MatInfo      info;
797472833a62Smarkadams4         PetscScalar *avals;
79756497c311SBarry Smith 
797672833a62Smarkadams4         PetscCall(MatGetInfo(c, MAT_LOCAL, &info));
797772833a62Smarkadams4         PetscCall(MatSeqAIJGetArray(c, &avals));
797872833a62Smarkadams4         for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]);
797972833a62Smarkadams4         PetscCall(MatSeqAIJRestoreArray(c, &avals));
798072833a62Smarkadams4       }
798172833a62Smarkadams4     }
79822d776b49SBarry Smith   }
798372833a62Smarkadams4   if (symmetrize) {
7984b94d7dedSBarry Smith     PetscBool isset, issym;
79856497c311SBarry Smith 
7986b94d7dedSBarry Smith     PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym));
7987b94d7dedSBarry Smith     if (!isset || !issym) {
798872833a62Smarkadams4       Mat matTrans;
79896497c311SBarry Smith 
799072833a62Smarkadams4       PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans));
79911fcb517eSBarry Smith       PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN));
799272833a62Smarkadams4       PetscCall(MatDestroy(&matTrans));
799372833a62Smarkadams4     }
799472833a62Smarkadams4     PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE));
79952d776b49SBarry Smith   } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat));
799672833a62Smarkadams4   if (scale) {
799772833a62Smarkadams4     /* scale c for all diagonal values = 1 or -1 */
799872833a62Smarkadams4     Vec diag;
79996497c311SBarry Smith 
800072833a62Smarkadams4     PetscCall(MatCreateVecs(Gmat, &diag, NULL));
800172833a62Smarkadams4     PetscCall(MatGetDiagonal(Gmat, diag));
800272833a62Smarkadams4     PetscCall(VecReciprocal(diag));
800372833a62Smarkadams4     PetscCall(VecSqrtAbs(diag));
800472833a62Smarkadams4     PetscCall(MatDiagonalScale(Gmat, diag, diag));
800572833a62Smarkadams4     PetscCall(VecDestroy(&diag));
800672833a62Smarkadams4   }
800772833a62Smarkadams4   PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view"));
80082d776b49SBarry Smith   if (filter >= 0) {
80092ce66baaSPierre Jolivet     PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE));
80102ce66baaSPierre Jolivet     PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view"));
80112d776b49SBarry Smith   }
801272833a62Smarkadams4   *a_Gmat = Gmat;
80133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
801472833a62Smarkadams4 }
801572833a62Smarkadams4 
801603db1824SAlex Lindsay PETSC_INTERN PetscErrorCode MatGetCurrentMemType_MPIAIJ(Mat A, PetscMemType *memtype)
801703db1824SAlex Lindsay {
801803db1824SAlex Lindsay   Mat_MPIAIJ  *mpiaij = (Mat_MPIAIJ *)A->data;
801903db1824SAlex Lindsay   PetscMemType mD = PETSC_MEMTYPE_HOST, mO = PETSC_MEMTYPE_HOST;
802003db1824SAlex Lindsay 
802103db1824SAlex Lindsay   PetscFunctionBegin;
802203db1824SAlex Lindsay   if (mpiaij->A) PetscCall(MatGetCurrentMemType(mpiaij->A, &mD));
802303db1824SAlex Lindsay   if (mpiaij->B) PetscCall(MatGetCurrentMemType(mpiaij->B, &mO));
802403db1824SAlex Lindsay   *memtype = (mD == mO) ? mD : PETSC_MEMTYPE_HOST;
802503db1824SAlex Lindsay   PetscFunctionReturn(PETSC_SUCCESS);
802603db1824SAlex Lindsay }
802703db1824SAlex Lindsay 
802872833a62Smarkadams4 /*
802998921bdaSJacob Faibussowitsch     Special version for direct calls from Fortran
803098921bdaSJacob Faibussowitsch */
803198921bdaSJacob Faibussowitsch 
803298921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */
80339566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */
80349566063dSJacob Faibussowitsch #undef PetscCall
80359371c9d4SSatish Balay #define PetscCall(...) \
80369371c9d4SSatish Balay   do { \
80375f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \
803898921bdaSJacob Faibussowitsch     if (PetscUnlikely(ierr_msv_mpiaij)) { \
803998921bdaSJacob Faibussowitsch       *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \
804098921bdaSJacob Faibussowitsch       return; \
804198921bdaSJacob Faibussowitsch     } \
804298921bdaSJacob Faibussowitsch   } while (0)
804398921bdaSJacob Faibussowitsch 
804498921bdaSJacob Faibussowitsch #undef SETERRQ
80459371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \
80469371c9d4SSatish Balay   do { \
804798921bdaSJacob Faibussowitsch     *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \
804898921bdaSJacob Faibussowitsch     return; \
804998921bdaSJacob Faibussowitsch   } while (0)
805098921bdaSJacob Faibussowitsch 
805198921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS)
805298921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ
805398921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
805498921bdaSJacob Faibussowitsch   #define matsetvaluesmpiaij_ matsetvaluesmpiaij
805598921bdaSJacob Faibussowitsch #else
805698921bdaSJacob Faibussowitsch #endif
8057d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr)
8058d71ae5a4SJacob Faibussowitsch {
805998921bdaSJacob Faibussowitsch   Mat         mat = *mmat;
806098921bdaSJacob Faibussowitsch   PetscInt    m = *mm, n = *mn;
806198921bdaSJacob Faibussowitsch   InsertMode  addv = *maddv;
806298921bdaSJacob Faibussowitsch   Mat_MPIAIJ *aij  = (Mat_MPIAIJ *)mat->data;
806398921bdaSJacob Faibussowitsch   PetscScalar value;
806498921bdaSJacob Faibussowitsch 
806598921bdaSJacob Faibussowitsch   MatCheckPreallocated(mat, 1);
806698921bdaSJacob Faibussowitsch   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
80675f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
806898921bdaSJacob Faibussowitsch   {
806998921bdaSJacob Faibussowitsch     PetscInt  i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend;
807098921bdaSJacob Faibussowitsch     PetscInt  cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col;
807198921bdaSJacob Faibussowitsch     PetscBool roworiented = aij->roworiented;
807298921bdaSJacob Faibussowitsch 
807398921bdaSJacob Faibussowitsch     /* Some Variables required in the macro */
807498921bdaSJacob Faibussowitsch     Mat         A     = aij->A;
807598921bdaSJacob Faibussowitsch     Mat_SeqAIJ *a     = (Mat_SeqAIJ *)A->data;
807698921bdaSJacob Faibussowitsch     PetscInt   *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
807798921bdaSJacob Faibussowitsch     MatScalar  *aa;
8078f4f49eeaSPierre Jolivet     PetscBool   ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE);
807998921bdaSJacob Faibussowitsch     Mat         B                 = aij->B;
808098921bdaSJacob Faibussowitsch     Mat_SeqAIJ *b                 = (Mat_SeqAIJ *)B->data;
808198921bdaSJacob Faibussowitsch     PetscInt   *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n;
808298921bdaSJacob Faibussowitsch     MatScalar  *ba;
808398921bdaSJacob Faibussowitsch     /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we
808498921bdaSJacob Faibussowitsch      * cannot use "#if defined" inside a macro. */
808598921bdaSJacob Faibussowitsch     PETSC_UNUSED PetscBool inserted = PETSC_FALSE;
808698921bdaSJacob Faibussowitsch 
808798921bdaSJacob Faibussowitsch     PetscInt  *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2;
808898921bdaSJacob Faibussowitsch     PetscInt   nonew = a->nonew;
808998921bdaSJacob Faibussowitsch     MatScalar *ap1, *ap2;
809098921bdaSJacob Faibussowitsch 
809198921bdaSJacob Faibussowitsch     PetscFunctionBegin;
80929566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(A, &aa));
80939566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJGetArray(B, &ba));
809498921bdaSJacob Faibussowitsch     for (i = 0; i < m; i++) {
809598921bdaSJacob Faibussowitsch       if (im[i] < 0) continue;
80966bdcaf15SBarry Smith       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
809798921bdaSJacob Faibussowitsch       if (im[i] >= rstart && im[i] < rend) {
809898921bdaSJacob Faibussowitsch         row      = im[i] - rstart;
809998921bdaSJacob Faibussowitsch         lastcol1 = -1;
810098921bdaSJacob Faibussowitsch         rp1      = aj + ai[row];
810198921bdaSJacob Faibussowitsch         ap1      = aa + ai[row];
810298921bdaSJacob Faibussowitsch         rmax1    = aimax[row];
810398921bdaSJacob Faibussowitsch         nrow1    = ailen[row];
810498921bdaSJacob Faibussowitsch         low1     = 0;
810598921bdaSJacob Faibussowitsch         high1    = nrow1;
810698921bdaSJacob Faibussowitsch         lastcol2 = -1;
810798921bdaSJacob Faibussowitsch         rp2      = bj + bi[row];
810898921bdaSJacob Faibussowitsch         ap2      = ba + bi[row];
810998921bdaSJacob Faibussowitsch         rmax2    = bimax[row];
811098921bdaSJacob Faibussowitsch         nrow2    = bilen[row];
811198921bdaSJacob Faibussowitsch         low2     = 0;
811298921bdaSJacob Faibussowitsch         high2    = nrow2;
811398921bdaSJacob Faibussowitsch 
811498921bdaSJacob Faibussowitsch         for (j = 0; j < n; j++) {
811598921bdaSJacob Faibussowitsch           if (roworiented) value = v[i * n + j];
811698921bdaSJacob Faibussowitsch           else value = v[i + j * m];
811798921bdaSJacob Faibussowitsch           if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue;
811898921bdaSJacob Faibussowitsch           if (in[j] >= cstart && in[j] < cend) {
811998921bdaSJacob Faibussowitsch             col = in[j] - cstart;
812098921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]);
812198921bdaSJacob Faibussowitsch           } else if (in[j] < 0) continue;
812298921bdaSJacob Faibussowitsch           else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) {
812363a3b9bcSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
812498921bdaSJacob Faibussowitsch           } else {
812598921bdaSJacob Faibussowitsch             if (mat->was_assembled) {
812648a46eb9SPierre Jolivet               if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat));
812798921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE)
8128eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col));
812998921bdaSJacob Faibussowitsch               col--;
813098921bdaSJacob Faibussowitsch #else
813198921bdaSJacob Faibussowitsch               col = aij->colmap[in[j]] - 1;
813298921bdaSJacob Faibussowitsch #endif
8133f4f49eeaSPierre Jolivet               if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) {
8134eb14dd14SAlex Lindsay                 PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE));
813598921bdaSJacob Faibussowitsch                 col = in[j];
813698921bdaSJacob Faibussowitsch                 /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
813798921bdaSJacob Faibussowitsch                 B        = aij->B;
813898921bdaSJacob Faibussowitsch                 b        = (Mat_SeqAIJ *)B->data;
81399371c9d4SSatish Balay                 bimax    = b->imax;
81409371c9d4SSatish Balay                 bi       = b->i;
81419371c9d4SSatish Balay                 bilen    = b->ilen;
81429371c9d4SSatish Balay                 bj       = b->j;
814398921bdaSJacob Faibussowitsch                 rp2      = bj + bi[row];
814498921bdaSJacob Faibussowitsch                 ap2      = ba + bi[row];
814598921bdaSJacob Faibussowitsch                 rmax2    = bimax[row];
814698921bdaSJacob Faibussowitsch                 nrow2    = bilen[row];
814798921bdaSJacob Faibussowitsch                 low2     = 0;
814898921bdaSJacob Faibussowitsch                 high2    = nrow2;
814998921bdaSJacob Faibussowitsch                 bm       = aij->B->rmap->n;
815098921bdaSJacob Faibussowitsch                 ba       = b->a;
815198921bdaSJacob Faibussowitsch                 inserted = PETSC_FALSE;
815298921bdaSJacob Faibussowitsch               }
815398921bdaSJacob Faibussowitsch             } else col = in[j];
815498921bdaSJacob Faibussowitsch             MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]);
815598921bdaSJacob Faibussowitsch           }
815698921bdaSJacob Faibussowitsch         }
815798921bdaSJacob Faibussowitsch       } else if (!aij->donotstash) {
815898921bdaSJacob Faibussowitsch         if (roworiented) {
81599566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
816098921bdaSJacob Faibussowitsch         } else {
81619566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES))));
816298921bdaSJacob Faibussowitsch         }
816398921bdaSJacob Faibussowitsch       }
816498921bdaSJacob Faibussowitsch     }
81659566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(A, &aa));
81669566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJRestoreArray(B, &ba));
816798921bdaSJacob Faibussowitsch   }
816898921bdaSJacob Faibussowitsch   PetscFunctionReturnVoid();
816998921bdaSJacob Faibussowitsch }
817072833a62Smarkadams4 
817198921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No
817298921bdaSJacob Faibussowitsch  * other PETSc functions should be defined past this point, as it is impossible to recover the
817398921bdaSJacob Faibussowitsch  * original definitions */
81749566063dSJacob Faibussowitsch #undef PetscCall
817598921bdaSJacob Faibussowitsch #undef SETERRQ
8176