1c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 2af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 397929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 4af0996ceSBarry Smith #include <petsc/private/isimpl.h> 5c6db04a5SJed Brown #include <petscblaslapack.h> 60c312b8eSJed Brown #include <petscsf.h> 7bc8e477aSFande Kong #include <petsc/private/hashmapi.h> 88a729477SBarry Smith 9674b392bSAlexander /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 10674b392bSAlexander #define TYPE AIJ 11674b392bSAlexander #define TYPE_AIJ 12674b392bSAlexander #include "../src/mat/impls/aij/mpi/mpihashmat.h" 13674b392bSAlexander #undef TYPE 14674b392bSAlexander #undef TYPE_AIJ 15674b392bSAlexander 16674b392bSAlexander static PetscErrorCode MatReset_MPIAIJ(Mat mat) 1726cec326SBarry Smith { 1826cec326SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1926cec326SBarry Smith 2026cec326SBarry Smith PetscFunctionBegin; 2126cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 2226cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 2326cec326SBarry Smith PetscCall(VecDestroy(&aij->diag)); 2426cec326SBarry Smith PetscCall(MatDestroy(&aij->A)); 2526cec326SBarry Smith PetscCall(MatDestroy(&aij->B)); 2626cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2726cec326SBarry Smith PetscCall(PetscHMapIDestroy(&aij->colmap)); 2826cec326SBarry Smith #else 2926cec326SBarry Smith PetscCall(PetscFree(aij->colmap)); 3026cec326SBarry Smith #endif 3126cec326SBarry Smith PetscCall(PetscFree(aij->garray)); 3226cec326SBarry Smith PetscCall(VecDestroy(&aij->lvec)); 3326cec326SBarry Smith PetscCall(VecScatterDestroy(&aij->Mvctx)); 3426cec326SBarry Smith PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 3526cec326SBarry Smith PetscCall(PetscFree(aij->ld)); 36674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 37674b392bSAlexander } 38674b392bSAlexander 39674b392bSAlexander static PetscErrorCode MatResetHash_MPIAIJ(Mat mat) 40674b392bSAlexander { 41674b392bSAlexander Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 42674b392bSAlexander /* Save the nonzero states of the component matrices because those are what are used to determine 43674b392bSAlexander the nonzero state of mat */ 44674b392bSAlexander PetscObjectState Astate = aij->A->nonzerostate, Bstate = aij->B->nonzerostate; 45674b392bSAlexander 46674b392bSAlexander PetscFunctionBegin; 47674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 48674b392bSAlexander PetscCall(MatSetUp_MPI_Hash(mat)); 49674b392bSAlexander aij->A->nonzerostate = ++Astate, aij->B->nonzerostate = ++Bstate; 50674b392bSAlexander PetscFunctionReturn(PETSC_SUCCESS); 51674b392bSAlexander } 52674b392bSAlexander 53674b392bSAlexander PetscErrorCode MatDestroy_MPIAIJ(Mat mat) 54674b392bSAlexander { 55674b392bSAlexander PetscFunctionBegin; 56674b392bSAlexander PetscCall(MatReset_MPIAIJ(mat)); 5726cec326SBarry Smith 5826cec326SBarry Smith PetscCall(PetscFree(mat->data)); 5926cec326SBarry Smith 6026cec326SBarry Smith /* may be created by MatCreateMPIAIJSumSeqAIJSymbolic */ 6126cec326SBarry Smith PetscCall(PetscObjectCompose((PetscObject)mat, "MatMergeSeqsToMPI", NULL)); 6226cec326SBarry Smith 6326cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 6526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 6626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatIsTranspose_C", NULL)); 6726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocation_C", NULL)); 6826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetPreallocation_C", NULL)); 69674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatResetHash_C", NULL)); 7026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetPreallocationCSR_C", NULL)); 7126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 7226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpibaij_C", NULL)); 7326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisbaij_C", NULL)); 7426cec326SBarry Smith #if defined(PETSC_HAVE_CUDA) 7526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcusparse_C", NULL)); 7626cec326SBarry Smith #endif 7726cec326SBarry Smith #if defined(PETSC_HAVE_HIP) 7826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijhipsparse_C", NULL)); 7926cec326SBarry Smith #endif 8026cec326SBarry Smith #if defined(PETSC_HAVE_KOKKOS_KERNELS) 8126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijkokkos_C", NULL)); 8226cec326SBarry Smith #endif 8326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 8426cec326SBarry Smith #if defined(PETSC_HAVE_ELEMENTAL) 8526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_elemental_C", NULL)); 8626cec326SBarry Smith #endif 87d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE)) 8826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_scalapack_C", NULL)); 8926cec326SBarry Smith #endif 9026cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 9126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_hypre_C", NULL)); 9226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", NULL)); 9326cec326SBarry Smith #endif 9426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 9526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_is_mpiaij_C", NULL)); 9626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpiaij_C", NULL)); 9726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIAIJSetUseScalableIncreaseOverlap_C", NULL)); 9826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijperm_C", NULL)); 9926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijsell_C", NULL)); 10026cec326SBarry Smith #if defined(PETSC_HAVE_MKL_SPARSE) 10126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijmkl_C", NULL)); 10226cec326SBarry Smith #endif 10326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpiaijcrl_C", NULL)); 10426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_is_C", NULL)); 10526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpisell_C", NULL)); 10626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetPreallocationCOO_C", NULL)); 10726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetValuesCOO_C", NULL)); 10826cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 10926cec326SBarry Smith } 11026cec326SBarry Smith 111ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 112d71ae5a4SJacob Faibussowitsch { 1138a9c020eSBarry Smith Mat B; 1148a9c020eSBarry Smith 1158a9c020eSBarry Smith PetscFunctionBegin; 1168a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &B)); 1178a9c020eSBarry Smith PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject)B)); 1188a9c020eSBarry Smith PetscCall(MatGetRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 119501b8e33SLisandro Dalcin PetscCall(MatDestroy(&B)); 1203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1218a9c020eSBarry Smith } 1228a9c020eSBarry Smith 123ba38deedSJacob Faibussowitsch static PetscErrorCode MatRestoreRowIJ_MPIAIJ(Mat A, PetscInt oshift, PetscBool symmetric, PetscBool inodecompressed, PetscInt *m, const PetscInt *ia[], const PetscInt *ja[], PetscBool *done) 124d71ae5a4SJacob Faibussowitsch { 1258a9c020eSBarry Smith Mat B; 1268a9c020eSBarry Smith 1278a9c020eSBarry Smith PetscFunctionBegin; 1288a9c020eSBarry Smith PetscCall(PetscObjectQuery((PetscObject)A, "MatGetRowIJ_MPIAIJ", (PetscObject *)&B)); 1298a9c020eSBarry Smith PetscCall(MatRestoreRowIJ(B, oshift, symmetric, inodecompressed, m, ia, ja, done)); 130501b8e33SLisandro Dalcin PetscCall(PetscObjectCompose((PetscObject)A, "MatGetRowIJ_MPIAIJ", NULL)); 1313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1328a9c020eSBarry Smith } 1338a9c020eSBarry Smith 13401bebe75SBarry Smith /*MC 13501bebe75SBarry Smith MATAIJ - MATAIJ = "aij" - A matrix type to be used for sparse matrices. 13601bebe75SBarry Smith 13711a5261eSBarry Smith This matrix type is identical to` MATSEQAIJ` when constructed with a single process communicator, 13811a5261eSBarry Smith and `MATMPIAIJ` otherwise. As a result, for single process communicators, 13911a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 14001bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 14101bebe75SBarry Smith the above preallocation routines for simplicity. 14201bebe75SBarry Smith 14327430b45SBarry Smith Options Database Key: 14411a5261eSBarry Smith . -mat_type aij - sets the matrix type to `MATAIJ` during a call to `MatSetFromOptions()` 14501bebe75SBarry Smith 14611a5261eSBarry Smith Developer Note: 1472ef1f0ffSBarry Smith Level: beginner 1482ef1f0ffSBarry Smith 14911a5261eSBarry Smith Subclasses include `MATAIJCUSPARSE`, `MATAIJPERM`, `MATAIJSELL`, `MATAIJMKL`, `MATAIJCRL`, `MATAIJKOKKOS`,and also automatically switches over to use inodes when 15001bebe75SBarry Smith enough exist. 15101bebe75SBarry Smith 1521cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateAIJ()`, `MatCreateSeqAIJ()`, `MATSEQAIJ`, `MATMPIAIJ` 15301bebe75SBarry Smith M*/ 15401bebe75SBarry Smith 15501bebe75SBarry Smith /*MC 15601bebe75SBarry Smith MATAIJCRL - MATAIJCRL = "aijcrl" - A matrix type to be used for sparse matrices. 15701bebe75SBarry Smith 15811a5261eSBarry Smith This matrix type is identical to `MATSEQAIJCRL` when constructed with a single process communicator, 15911a5261eSBarry Smith and `MATMPIAIJCRL` otherwise. As a result, for single process communicators, 16011a5261eSBarry Smith `MatSeqAIJSetPreallocation()` is supported, and similarly `MatMPIAIJSetPreallocation()` is supported 16101bebe75SBarry Smith for communicators controlling multiple processes. It is recommended that you call both of 16201bebe75SBarry Smith the above preallocation routines for simplicity. 16301bebe75SBarry Smith 16427430b45SBarry Smith Options Database Key: 16511a5261eSBarry Smith . -mat_type aijcrl - sets the matrix type to `MATMPIAIJCRL` during a call to `MatSetFromOptions()` 16601bebe75SBarry Smith 16701bebe75SBarry Smith Level: beginner 16801bebe75SBarry Smith 1691cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL`, `MATSEQAIJCRL`, `MATMPIAIJCRL` 17001bebe75SBarry Smith M*/ 17101bebe75SBarry Smith 172d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatBindToCPU_MPIAIJ(Mat A, PetscBool flg) 173d71ae5a4SJacob Faibussowitsch { 174f74ef234SStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 175f74ef234SStefano Zampini 176f74ef234SStefano Zampini PetscFunctionBegin; 177d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) || defined(PETSC_HAVE_VIENNACL) 178b470e4b4SRichard Tran Mills A->boundtocpu = flg; 179f74ef234SStefano Zampini #endif 1801baa6e33SBarry Smith if (a->A) PetscCall(MatBindToCPU(a->A, flg)); 1811baa6e33SBarry Smith if (a->B) PetscCall(MatBindToCPU(a->B, flg)); 1823120d049SRichard Tran Mills 1833120d049SRichard Tran Mills /* In addition to binding the diagonal and off-diagonal matrices, bind the local vectors used for matrix-vector products. 1843120d049SRichard Tran Mills * This maybe seems a little odd for a MatBindToCPU() call to do, but it makes no sense for the binding of these vectors 1853120d049SRichard Tran Mills * to differ from the parent matrix. */ 1861baa6e33SBarry Smith if (a->lvec) PetscCall(VecBindToCPU(a->lvec, flg)); 1871baa6e33SBarry Smith if (a->diag) PetscCall(VecBindToCPU(a->diag, flg)); 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189f74ef234SStefano Zampini } 190f74ef234SStefano Zampini 191ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetBlockSizes_MPIAIJ(Mat M, PetscInt rbs, PetscInt cbs) 192d71ae5a4SJacob Faibussowitsch { 19326bda2c4Sstefano_zampini Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 19426bda2c4Sstefano_zampini 19526bda2c4Sstefano_zampini PetscFunctionBegin; 19646533700Sstefano_zampini if (mat->A) { 1979566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->A, rbs, cbs)); 1989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(mat->B, rbs, 1)); 19946533700Sstefano_zampini } 2003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20126bda2c4Sstefano_zampini } 20226bda2c4Sstefano_zampini 203ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindNonzeroRows_MPIAIJ(Mat M, IS *keptrows) 204d71ae5a4SJacob Faibussowitsch { 20527d4218bSShri Abhyankar Mat_MPIAIJ *mat = (Mat_MPIAIJ *)M->data; 20627d4218bSShri Abhyankar Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data; 20727d4218bSShri Abhyankar Mat_SeqAIJ *b = (Mat_SeqAIJ *)mat->B->data; 20827d4218bSShri Abhyankar const PetscInt *ia, *ib; 209ce496241SStefano Zampini const MatScalar *aa, *bb, *aav, *bav; 21027d4218bSShri Abhyankar PetscInt na, nb, i, j, *rows, cnt = 0, n0rows; 21127d4218bSShri Abhyankar PetscInt m = M->rmap->n, rstart = M->rmap->rstart; 21227d4218bSShri Abhyankar 21327d4218bSShri Abhyankar PetscFunctionBegin; 214f4259b30SLisandro Dalcin *keptrows = NULL; 215ce496241SStefano Zampini 21627d4218bSShri Abhyankar ia = a->i; 21727d4218bSShri Abhyankar ib = b->i; 2189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->A, &aav)); 2199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mat->B, &bav)); 22027d4218bSShri Abhyankar for (i = 0; i < m; i++) { 22127d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 22227d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 22327d4218bSShri Abhyankar if (!na && !nb) { 22427d4218bSShri Abhyankar cnt++; 22527d4218bSShri Abhyankar goto ok1; 22627d4218bSShri Abhyankar } 227ce496241SStefano Zampini aa = aav + ia[i]; 22827d4218bSShri Abhyankar for (j = 0; j < na; j++) { 22927d4218bSShri Abhyankar if (aa[j] != 0.0) goto ok1; 23027d4218bSShri Abhyankar } 2318e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 23227d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 23327d4218bSShri Abhyankar if (bb[j] != 0.0) goto ok1; 23427d4218bSShri Abhyankar } 23527d4218bSShri Abhyankar cnt++; 23627d4218bSShri Abhyankar ok1:; 23727d4218bSShri Abhyankar } 238462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&cnt, &n0rows, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)M))); 239ce496241SStefano Zampini if (!n0rows) { 2409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 243ce496241SStefano Zampini } 2449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M->rmap->n - cnt, &rows)); 24527d4218bSShri Abhyankar cnt = 0; 24627d4218bSShri Abhyankar for (i = 0; i < m; i++) { 24727d4218bSShri Abhyankar na = ia[i + 1] - ia[i]; 24827d4218bSShri Abhyankar nb = ib[i + 1] - ib[i]; 24927d4218bSShri Abhyankar if (!na && !nb) continue; 250ce496241SStefano Zampini aa = aav + ia[i]; 25127d4218bSShri Abhyankar for (j = 0; j < na; j++) { 25227d4218bSShri Abhyankar if (aa[j] != 0.0) { 25327d4218bSShri Abhyankar rows[cnt++] = rstart + i; 25427d4218bSShri Abhyankar goto ok2; 25527d4218bSShri Abhyankar } 25627d4218bSShri Abhyankar } 2578e3a54c0SPierre Jolivet bb = PetscSafePointerPlusOffset(bav, ib[i]); 25827d4218bSShri Abhyankar for (j = 0; j < nb; j++) { 25927d4218bSShri Abhyankar if (bb[j] != 0.0) { 26027d4218bSShri Abhyankar rows[cnt++] = rstart + i; 26127d4218bSShri Abhyankar goto ok2; 26227d4218bSShri Abhyankar } 26327d4218bSShri Abhyankar } 26427d4218bSShri Abhyankar ok2:; 26527d4218bSShri Abhyankar } 2669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), cnt, rows, PETSC_OWN_POINTER, keptrows)); 2679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->A, &aav)); 2689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mat->B, &bav)); 2693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 27027d4218bSShri Abhyankar } 27127d4218bSShri Abhyankar 272ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalSet_MPIAIJ(Mat Y, Vec D, InsertMode is) 273d71ae5a4SJacob Faibussowitsch { 27499e65526SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Y->data; 27594342113SStefano Zampini PetscBool cong; 27699e65526SBarry Smith 27799e65526SBarry Smith PetscFunctionBegin; 2789566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(Y, &cong)); 27994342113SStefano Zampini if (Y->assembled && cong) { 2809566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(aij->A, D, is)); 28199e65526SBarry Smith } else { 2829566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet_Default(Y, D, is)); 28399e65526SBarry Smith } 2843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28599e65526SBarry Smith } 28699e65526SBarry Smith 287ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindZeroDiagonals_MPIAIJ(Mat M, IS *zrows) 288d71ae5a4SJacob Faibussowitsch { 289f1f41ecbSJed Brown Mat_MPIAIJ *aij = (Mat_MPIAIJ *)M->data; 290f1f41ecbSJed Brown PetscInt i, rstart, nrows, *rows; 291f1f41ecbSJed Brown 292f1f41ecbSJed Brown PetscFunctionBegin; 2930298fd71SBarry Smith *zrows = NULL; 2949566063dSJacob Faibussowitsch PetscCall(MatFindZeroDiagonals_SeqAIJ_Private(aij->A, &nrows, &rows)); 2959566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 296f1f41ecbSJed Brown for (i = 0; i < nrows; i++) rows[i] += rstart; 2979566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)M), nrows, rows, PETSC_OWN_POINTER, zrows)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299f1f41ecbSJed Brown } 300f1f41ecbSJed Brown 301ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIAIJ(Mat A, PetscInt type, PetscReal *reductions) 302d71ae5a4SJacob Faibussowitsch { 3030716a85fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 304a873a8cdSSam Reynolds PetscInt i, m, n, *garray = aij->garray; 3050716a85fSBarry Smith Mat_SeqAIJ *a_aij = (Mat_SeqAIJ *)aij->A->data; 3060716a85fSBarry Smith Mat_SeqAIJ *b_aij = (Mat_SeqAIJ *)aij->B->data; 3070716a85fSBarry Smith PetscReal *work; 308ce496241SStefano Zampini const PetscScalar *dummy; 3090716a85fSBarry Smith 3100716a85fSBarry Smith PetscFunctionBegin; 3119566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 3129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n, &work)); 3139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &dummy)); 3149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &dummy)); 3159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &dummy)); 3169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &dummy)); 317857cbf51SRichard Tran Mills if (type == NORM_2) { 318ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i] * a_aij->a[i]); 319ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i] * b_aij->a[i]); 320857cbf51SRichard Tran Mills } else if (type == NORM_1) { 321ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscAbsScalar(a_aij->a[i]); 322ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscAbsScalar(b_aij->a[i]); 323857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 324ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] = PetscMax(PetscAbsScalar(a_aij->a[i]), work[A->cmap->rstart + a_aij->j[i]]); 325ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] = PetscMax(PetscAbsScalar(b_aij->a[i]), work[garray[b_aij->j[i]]]); 326857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 327ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscRealPart(a_aij->a[i]); 328ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscRealPart(b_aij->a[i]); 329857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 330ad540459SPierre Jolivet for (i = 0; i < a_aij->i[aij->A->rmap->n]; i++) work[A->cmap->rstart + a_aij->j[i]] += PetscImaginaryPart(a_aij->a[i]); 331ad540459SPierre Jolivet for (i = 0; i < b_aij->i[aij->B->rmap->n]; i++) work[garray[b_aij->j[i]]] += PetscImaginaryPart(b_aij->a[i]); 332857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 333857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 334e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 3350716a85fSBarry Smith } else { 336e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 3370716a85fSBarry Smith } 3389566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 339857cbf51SRichard Tran Mills if (type == NORM_2) { 340a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 341857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 342a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 3430716a85fSBarry Smith } 3443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3450716a85fSBarry Smith } 3460716a85fSBarry Smith 347ba38deedSJacob Faibussowitsch static PetscErrorCode MatFindOffBlockDiagonalEntries_MPIAIJ(Mat A, IS *is) 348d71ae5a4SJacob Faibussowitsch { 349e52d2c62SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 350e52d2c62SBarry Smith IS sis, gis; 351e52d2c62SBarry Smith const PetscInt *isis, *igis; 352e52d2c62SBarry Smith PetscInt n, *iis, nsis, ngis, rstart, i; 353e52d2c62SBarry Smith 354e52d2c62SBarry Smith PetscFunctionBegin; 3559566063dSJacob Faibussowitsch PetscCall(MatFindOffBlockDiagonalEntries(a->A, &sis)); 3569566063dSJacob Faibussowitsch PetscCall(MatFindNonzeroRows(a->B, &gis)); 3579566063dSJacob Faibussowitsch PetscCall(ISGetSize(gis, &ngis)); 3589566063dSJacob Faibussowitsch PetscCall(ISGetSize(sis, &nsis)); 3599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(sis, &isis)); 3609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(gis, &igis)); 361e52d2c62SBarry Smith 3629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ngis + nsis, &iis)); 3639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis, igis, ngis)); 3649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(iis + ngis, isis, nsis)); 365e52d2c62SBarry Smith n = ngis + nsis; 3669566063dSJacob Faibussowitsch PetscCall(PetscSortRemoveDupsInt(&n, iis)); 3679566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 368e52d2c62SBarry Smith for (i = 0; i < n; i++) iis[i] += rstart; 3699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)A), n, iis, PETSC_OWN_POINTER, is)); 370e52d2c62SBarry Smith 3719566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(sis, &isis)); 3729566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(gis, &igis)); 3739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&sis)); 3749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&gis)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 376e52d2c62SBarry Smith } 377e52d2c62SBarry Smith 378dd6ea824SBarry Smith /* 3790f5bd95cSBarry Smith Local utility routine that creates a mapping from the global column 3809e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 3810f5bd95cSBarry Smith storage of the matrix. When PETSC_USE_CTABLE is used this is scalable at 3820f5bd95cSBarry Smith a slightly higher hash table cost; without it it is not scalable (each processor 38372fa4726SStefano Zampini has an order N integer array but is fast to access. 3849e25ed09SBarry Smith */ 385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIAIJ_Private(Mat mat) 386d71ae5a4SJacob Faibussowitsch { 38744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 388d0f46423SBarry Smith PetscInt n = aij->B->cmap->n, i; 389dbb450caSBarry Smith 3903a40ed3dSBarry Smith PetscFunctionBegin; 39108401ef6SPierre Jolivet PetscCheck(!n || aij->garray, PETSC_COMM_SELF, PETSC_ERR_PLIB, "MPIAIJ Matrix was assembled but is missing garray"); 392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 393eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(n, &aij->colmap)); 394c76ffc5fSJacob Faibussowitsch for (i = 0; i < n; i++) PetscCall(PetscHMapISet(aij->colmap, aij->garray[i] + 1, i + 1)); 395b1fc9764SSatish Balay #else 3969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N + 1, &aij->colmap)); 397905e6a2fSBarry Smith for (i = 0; i < n; i++) aij->colmap[aij->garray[i]] = i + 1; 398b1fc9764SSatish Balay #endif 3993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4009e25ed09SBarry Smith } 4019e25ed09SBarry Smith 402d40312a9SBarry Smith #define MatSetValues_SeqAIJ_A_Private(row, col, value, addv, orow, ocol) \ 403a8f51744SPierre Jolivet do { \ 404db4deed7SKarl Rupp if (col <= lastcol1) low1 = 0; \ 405db4deed7SKarl Rupp else high1 = nrow1; \ 406fd3458f5SBarry Smith lastcol1 = col; \ 407fd3458f5SBarry Smith while (high1 - low1 > 5) { \ 408fd3458f5SBarry Smith t = (low1 + high1) / 2; \ 409fd3458f5SBarry Smith if (rp1[t] > col) high1 = t; \ 410fd3458f5SBarry Smith else low1 = t; \ 411ba4e3ef2SSatish Balay } \ 412fd3458f5SBarry Smith for (_i = low1; _i < high1; _i++) { \ 413fd3458f5SBarry Smith if (rp1[_i] > col) break; \ 414fd3458f5SBarry Smith if (rp1[_i] == col) { \ 4150c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4160c0d7e18SFande Kong ap1[_i] += value; \ 4179680b7ceSStefano Zampini /* Not sure LogFlops will slow down the code or not */ \ 4180c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4199371c9d4SSatish Balay } else ap1[_i] = value; \ 42030770e4dSSatish Balay goto a_noinsert; \ 4210520107fSSatish Balay } \ 4220520107fSSatish Balay } \ 4239371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries && row != col) { \ 4249371c9d4SSatish Balay low1 = 0; \ 4259371c9d4SSatish Balay high1 = nrow1; \ 4269371c9d4SSatish Balay goto a_noinsert; \ 4279371c9d4SSatish Balay } \ 4289371c9d4SSatish Balay if (nonew == 1) { \ 4299371c9d4SSatish Balay low1 = 0; \ 4309371c9d4SSatish Balay high1 = nrow1; \ 4319371c9d4SSatish Balay goto a_noinsert; \ 4329371c9d4SSatish Balay } \ 43308401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 434fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, am, 1, nrow1, row, col, rmax1, aa, ai, aj, rp1, ap1, aimax, nonew, MatScalar); \ 4359371c9d4SSatish Balay N = nrow1++ - 1; \ 4369371c9d4SSatish Balay a->nz++; \ 4379371c9d4SSatish Balay high1++; \ 4380520107fSSatish Balay /* shift up all the later entries in this row */ \ 4399566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp1 + _i + 1, rp1 + _i, N - _i + 1)); \ 4409566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap1 + _i + 1, ap1 + _i, N - _i + 1)); \ 441fd3458f5SBarry Smith rp1[_i] = col; \ 442fd3458f5SBarry Smith ap1[_i] = value; \ 44330770e4dSSatish Balay a_noinsert:; \ 444fd3458f5SBarry Smith ailen[row] = nrow1; \ 445a8f51744SPierre Jolivet } while (0) 4460a198c4cSBarry Smith 447d40312a9SBarry Smith #define MatSetValues_SeqAIJ_B_Private(row, col, value, addv, orow, ocol) \ 448a8f51744SPierre Jolivet do { \ 449db4deed7SKarl Rupp if (col <= lastcol2) low2 = 0; \ 450db4deed7SKarl Rupp else high2 = nrow2; \ 451fd3458f5SBarry Smith lastcol2 = col; \ 452fd3458f5SBarry Smith while (high2 - low2 > 5) { \ 453fd3458f5SBarry Smith t = (low2 + high2) / 2; \ 454fd3458f5SBarry Smith if (rp2[t] > col) high2 = t; \ 455fd3458f5SBarry Smith else low2 = t; \ 456ba4e3ef2SSatish Balay } \ 457fd3458f5SBarry Smith for (_i = low2; _i < high2; _i++) { \ 458fd3458f5SBarry Smith if (rp2[_i] > col) break; \ 459fd3458f5SBarry Smith if (rp2[_i] == col) { \ 4600c0d7e18SFande Kong if (addv == ADD_VALUES) { \ 4610c0d7e18SFande Kong ap2[_i] += value; \ 4620c0d7e18SFande Kong (void)PetscLogFlops(1.0); \ 4639371c9d4SSatish Balay } else ap2[_i] = value; \ 46430770e4dSSatish Balay goto b_noinsert; \ 46530770e4dSSatish Balay } \ 46630770e4dSSatish Balay } \ 4679371c9d4SSatish Balay if (value == 0.0 && ignorezeroentries) { \ 4689371c9d4SSatish Balay low2 = 0; \ 4699371c9d4SSatish Balay high2 = nrow2; \ 4709371c9d4SSatish Balay goto b_noinsert; \ 4719371c9d4SSatish Balay } \ 4729371c9d4SSatish Balay if (nonew == 1) { \ 4739371c9d4SSatish Balay low2 = 0; \ 4749371c9d4SSatish Balay high2 = nrow2; \ 4759371c9d4SSatish Balay goto b_noinsert; \ 4769371c9d4SSatish Balay } \ 47708401ef6SPierre Jolivet PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 478fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, bm, 1, nrow2, row, col, rmax2, ba, bi, bj, rp2, ap2, bimax, nonew, MatScalar); \ 4799371c9d4SSatish Balay N = nrow2++ - 1; \ 4809371c9d4SSatish Balay b->nz++; \ 4819371c9d4SSatish Balay high2++; \ 48230770e4dSSatish Balay /* shift up all the later entries in this row */ \ 4839566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp2 + _i + 1, rp2 + _i, N - _i + 1)); \ 4849566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap2 + _i + 1, ap2 + _i, N - _i + 1)); \ 485fd3458f5SBarry Smith rp2[_i] = col; \ 486fd3458f5SBarry Smith ap2[_i] = value; \ 48730770e4dSSatish Balay b_noinsert:; \ 488fd3458f5SBarry Smith bilen[row] = nrow2; \ 489a8f51744SPierre Jolivet } while (0) 49030770e4dSSatish Balay 491ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetValuesRow_MPIAIJ(Mat A, PetscInt row, const PetscScalar v[]) 492d71ae5a4SJacob Faibussowitsch { 4932fd7e33dSBarry Smith Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 4942fd7e33dSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)mat->A->data, *b = (Mat_SeqAIJ *)mat->B->data; 4952fd7e33dSBarry Smith PetscInt l, *garray = mat->garray, diag; 496fff043a9SJunchao Zhang PetscScalar *aa, *ba; 4972fd7e33dSBarry Smith 4982fd7e33dSBarry Smith PetscFunctionBegin; 4992fd7e33dSBarry Smith /* code only works for square matrices A */ 5002fd7e33dSBarry Smith 5012fd7e33dSBarry Smith /* find size of row to the left of the diagonal part */ 5029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &diag, NULL)); 5032fd7e33dSBarry Smith row = row - diag; 5042fd7e33dSBarry Smith for (l = 0; l < b->i[row + 1] - b->i[row]; l++) { 5052fd7e33dSBarry Smith if (garray[b->j[b->i[row] + l]] > diag) break; 5062fd7e33dSBarry Smith } 507fff043a9SJunchao Zhang if (l) { 5089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5099566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row], v, l)); 5109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 511fff043a9SJunchao Zhang } 5122fd7e33dSBarry Smith 5132fd7e33dSBarry Smith /* diagonal part */ 514fff043a9SJunchao Zhang if (a->i[row + 1] - a->i[row]) { 5159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->A, &aa)); 51657508eceSPierre Jolivet PetscCall(PetscArraycpy(aa + a->i[row], v + l, a->i[row + 1] - a->i[row])); 5179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->A, &aa)); 518fff043a9SJunchao Zhang } 5192fd7e33dSBarry Smith 5202fd7e33dSBarry Smith /* right of diagonal part */ 521fff043a9SJunchao Zhang if (b->i[row + 1] - b->i[row] - l) { 5229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(mat->B, &ba)); 5239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ba + b->i[row] + l, v + l + a->i[row + 1] - a->i[row], b->i[row + 1] - b->i[row] - l)); 5249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(mat->B, &ba)); 525fff043a9SJunchao Zhang } 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5272fd7e33dSBarry Smith } 5282fd7e33dSBarry Smith 529d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 530d71ae5a4SJacob Faibussowitsch { 53144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 532071fcb05SBarry Smith PetscScalar value = 0.0; 533d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 534d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 535ace3abfcSBarry Smith PetscBool roworiented = aij->roworiented; 5368a729477SBarry Smith 5370520107fSSatish Balay /* Some Variables required in the macro */ 5384ee7247eSSatish Balay Mat A = aij->A; 5394ee7247eSSatish Balay Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 54057809a77SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 541ace3abfcSBarry Smith PetscBool ignorezeroentries = a->ignorezeroentries; 54230770e4dSSatish Balay Mat B = aij->B; 54330770e4dSSatish Balay Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 544d0f46423SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 545ce496241SStefano Zampini MatScalar *aa, *ba; 546fd3458f5SBarry Smith PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 5478d76821aSHong Zhang PetscInt nonew; 548a77337e4SBarry Smith MatScalar *ap1, *ap2; 5494ee7247eSSatish Balay 5503a40ed3dSBarry Smith PetscFunctionBegin; 5519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 5529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 5538a729477SBarry Smith for (i = 0; i < m; i++) { 5545ef9f2a5SBarry Smith if (im[i] < 0) continue; 55508401ef6SPierre Jolivet PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 5564b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 5574b0e389bSBarry Smith row = im[i] - rstart; 558fd3458f5SBarry Smith lastcol1 = -1; 5598e3a54c0SPierre Jolivet rp1 = PetscSafePointerPlusOffset(aj, ai[row]); 5608e3a54c0SPierre Jolivet ap1 = PetscSafePointerPlusOffset(aa, ai[row]); 561fd3458f5SBarry Smith rmax1 = aimax[row]; 562fd3458f5SBarry Smith nrow1 = ailen[row]; 563fd3458f5SBarry Smith low1 = 0; 564fd3458f5SBarry Smith high1 = nrow1; 565fd3458f5SBarry Smith lastcol2 = -1; 5668e3a54c0SPierre Jolivet rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 5678e3a54c0SPierre Jolivet ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 568fd3458f5SBarry Smith rmax2 = bimax[row]; 569d498b1e9SBarry Smith nrow2 = bilen[row]; 570fd3458f5SBarry Smith low2 = 0; 571fd3458f5SBarry Smith high2 = nrow2; 572fd3458f5SBarry Smith 5731eb62cbbSBarry Smith for (j = 0; j < n; j++) { 574071fcb05SBarry Smith if (v) value = roworiented ? v[i * n + j] : v[i + j * m]; 575c80a64e6SBarry Smith if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 576fd3458f5SBarry Smith if (in[j] >= cstart && in[j] < cend) { 577fd3458f5SBarry Smith col = in[j] - cstart; 5788d76821aSHong Zhang nonew = a->nonew; 579d40312a9SBarry Smith MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 580f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 581f7d195e4SLawrence Mitchell continue; 582f7d195e4SLawrence Mitchell } else { 583f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 584227d817aSBarry Smith if (mat->was_assembled) { 58548a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 586aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 587eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); /* map global col ids to local ones */ 588fa46199cSSatish Balay col--; 589b1fc9764SSatish Balay #else 590905e6a2fSBarry Smith col = aij->colmap[in[j]] - 1; 591b1fc9764SSatish Balay #endif 592f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->B->data)->nonew) { /* col < 0 means in[j] is a new col for B */ 593eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); /* Change aij->B from reduced/local format to expanded/global format */ 5944b0e389bSBarry Smith col = in[j]; 5959bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 596f9508a3cSSatish Balay B = aij->B; 597f9508a3cSSatish Balay b = (Mat_SeqAIJ *)B->data; 5989371c9d4SSatish Balay bimax = b->imax; 5999371c9d4SSatish Balay bi = b->i; 6009371c9d4SSatish Balay bilen = b->ilen; 6019371c9d4SSatish Balay bj = b->j; 6029371c9d4SSatish Balay ba = b->a; 603cff58d65SJunchao Zhang rp2 = PetscSafePointerPlusOffset(bj, bi[row]); 604cff58d65SJunchao Zhang ap2 = PetscSafePointerPlusOffset(ba, bi[row]); 605d498b1e9SBarry Smith rmax2 = bimax[row]; 606d498b1e9SBarry Smith nrow2 = bilen[row]; 607d498b1e9SBarry Smith low2 = 0; 608d498b1e9SBarry Smith high2 = nrow2; 609d0f46423SBarry Smith bm = aij->B->rmap->n; 610f9508a3cSSatish Balay ba = b->a; 611d707bf6cSMatthew Knepley } else if (col < 0 && !(ignorezeroentries && value == 0.0)) { 612966bd95aSPierre Jolivet PetscCheck(1 == ((Mat_SeqAIJ *)aij->B->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 6139566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Skipping of insertion of new nonzero location in off-diagonal portion of matrix %g(%" PetscInt_FMT ",%" PetscInt_FMT ")\n", (double)PetscRealPart(value), im[i], in[j])); 6140587a0fcSBarry Smith } 615c48de900SBarry Smith } else col = in[j]; 6168d76821aSHong Zhang nonew = b->nonew; 617d40312a9SBarry Smith MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 6181eb62cbbSBarry Smith } 6191eb62cbbSBarry Smith } 6205ef9f2a5SBarry Smith } else { 62128b400f6SJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 62290f02eecSBarry Smith if (!aij->donotstash) { 6235080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 624d36fbae8SSatish Balay if (roworiented) { 6258e3a54c0SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i * n), (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 626d36fbae8SSatish Balay } else { 6278e3a54c0SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, PetscSafePointerPlusOffset(v, i), m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 6284b0e389bSBarry Smith } 6291eb62cbbSBarry Smith } 6308a729477SBarry Smith } 63190f02eecSBarry Smith } 6325519a089SJose E. Roman PetscCall(MatSeqAIJRestoreArray(A, &aa)); /* aa, bb might have been free'd due to reallocation above. But we don't access them here */ 6339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 6343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6358a729477SBarry Smith } 6368a729477SBarry Smith 6372b08fdbeSandi selinger /* 638904d1e70Sandi selinger This function sets the j and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 6392b08fdbeSandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 640904d1e70Sandi selinger No off-processor parts off the matrix are allowed here and mat->was_assembled has to be PETSC_FALSE. 6412b08fdbeSandi selinger */ 642d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[]) 643d71ae5a4SJacob Faibussowitsch { 644904d1e70Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 645904d1e70Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6464cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 647904d1e70Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 648904d1e70Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 649904d1e70Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, col; 650904d1e70Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 651904d1e70Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6526dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 653904d1e70Sandi selinger PetscInt diag_so_far = 0, dnz; 654904d1e70Sandi selinger PetscInt offd_so_far = 0, onz; 655904d1e70Sandi selinger 656904d1e70Sandi selinger PetscFunctionBegin; 657904d1e70Sandi selinger /* Iterate over all rows of the matrix */ 658904d1e70Sandi selinger for (j = 0; j < am; j++) { 659904d1e70Sandi selinger dnz = onz = 0; 660904d1e70Sandi selinger /* Iterate over all non-zero columns of the current row */ 6616dc1ffa3Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 662904d1e70Sandi selinger /* If column is in the diagonal */ 663904d1e70Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 664904d1e70Sandi selinger aj[diag_so_far++] = mat_j[col] - cstart; 665904d1e70Sandi selinger dnz++; 666904d1e70Sandi selinger } else { /* off-diagonal entries */ 667904d1e70Sandi selinger bj[offd_so_far++] = mat_j[col]; 668904d1e70Sandi selinger onz++; 669904d1e70Sandi selinger } 670904d1e70Sandi selinger } 671904d1e70Sandi selinger ailen[j] = dnz; 672904d1e70Sandi selinger bilen[j] = onz; 673904d1e70Sandi selinger } 6743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 675904d1e70Sandi selinger } 676904d1e70Sandi selinger 677904d1e70Sandi selinger /* 678904d1e70Sandi selinger This function sets the local j, a and ilen arrays (of the diagonal and off-diagonal part) of an MPIAIJ-matrix. 679904d1e70Sandi selinger The values in mat_i have to be sorted and the values in mat_j have to be sorted for each row (CSR-like). 6801de21080Sandi selinger No off-processor parts off the matrix are allowed here, they are set at a later point by MatSetValues_MPIAIJ. 6811de21080Sandi selinger Also, mat->was_assembled has to be false, otherwise the statement aj[rowstart_diag+dnz_row] = mat_j[col] - cstart; 6821de21080Sandi selinger would not be true and the more complex MatSetValues_MPIAIJ has to be used. 683904d1e70Sandi selinger */ 684d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIAIJ_CopyFromCSRFormat(Mat mat, const PetscInt mat_j[], const PetscInt mat_i[], const PetscScalar mat_a[]) 685d71ae5a4SJacob Faibussowitsch { 6863a063d27Sandi selinger Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 6873a063d27Sandi selinger Mat A = aij->A; /* diagonal part of the matrix */ 6884cf0e950SBarry Smith Mat B = aij->B; /* off-diagonal part of the matrix */ 689f4f49eeaSPierre Jolivet Mat_SeqAIJ *aijd = (Mat_SeqAIJ *)aij->A->data, *aijo = (Mat_SeqAIJ *)aij->B->data; 6903a063d27Sandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 6913a063d27Sandi selinger Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 6923a063d27Sandi selinger PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend; 6933a063d27Sandi selinger PetscInt *ailen = a->ilen, *aj = a->j; 6943a063d27Sandi selinger PetscInt *bilen = b->ilen, *bj = b->j; 6956dc1ffa3Sandi selinger PetscInt am = aij->A->rmap->n, j; 6961de21080Sandi selinger PetscInt *full_diag_i = aijd->i, *full_offd_i = aijo->i; /* These variables can also include non-local elements, which are set at a later point. */ 697904d1e70Sandi selinger PetscInt col, dnz_row, onz_row, rowstart_diag, rowstart_offd; 698904d1e70Sandi selinger PetscScalar *aa = a->a, *ba = b->a; 6993a063d27Sandi selinger 7003a063d27Sandi selinger PetscFunctionBegin; 7013a063d27Sandi selinger /* Iterate over all rows of the matrix */ 7023a063d27Sandi selinger for (j = 0; j < am; j++) { 703904d1e70Sandi selinger dnz_row = onz_row = 0; 704904d1e70Sandi selinger rowstart_offd = full_offd_i[j]; 705904d1e70Sandi selinger rowstart_diag = full_diag_i[j]; 706e9ede7d0Sandi selinger /* Iterate over all non-zero columns of the current row */ 707e9ede7d0Sandi selinger for (col = mat_i[j]; col < mat_i[j + 1]; col++) { 708ae8e66a0Sandi selinger /* If column is in the diagonal */ 7093a063d27Sandi selinger if (mat_j[col] >= cstart && mat_j[col] < cend) { 710904d1e70Sandi selinger aj[rowstart_diag + dnz_row] = mat_j[col] - cstart; 711904d1e70Sandi selinger aa[rowstart_diag + dnz_row] = mat_a[col]; 712904d1e70Sandi selinger dnz_row++; 713ae8e66a0Sandi selinger } else { /* off-diagonal entries */ 714904d1e70Sandi selinger bj[rowstart_offd + onz_row] = mat_j[col]; 715904d1e70Sandi selinger ba[rowstart_offd + onz_row] = mat_a[col]; 716904d1e70Sandi selinger onz_row++; 7173a063d27Sandi selinger } 7183a063d27Sandi selinger } 719904d1e70Sandi selinger ailen[j] = dnz_row; 720904d1e70Sandi selinger bilen[j] = onz_row; 7213a063d27Sandi selinger } 7223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7233a063d27Sandi selinger } 7243a063d27Sandi selinger 725ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 726d71ae5a4SJacob Faibussowitsch { 727b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 728d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 729d0f46423SBarry Smith PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 730b49de8d1SLois Curfman McInnes 7313a40ed3dSBarry Smith PetscFunctionBegin; 732b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 73354c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 73454c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 73585835d77SBarry Smith PetscCheck(idxm[i] >= rstart && idxm[i] < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported, row requested %" PetscInt_FMT " range [%" PetscInt_FMT " %" PetscInt_FMT ")", idxm[i], rstart, rend); 736b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 737b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 73854c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 73954c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 740b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend) { 741b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 7429566063dSJacob Faibussowitsch PetscCall(MatGetValues(aij->A, 1, &row, 1, &col, v + i * n + j)); 743fa852ad4SSatish Balay } else { 74448a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 745aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 746eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, idxn[j] + 1, 0, &col)); 747fa46199cSSatish Balay col--; 748b1fc9764SSatish Balay #else 749905e6a2fSBarry Smith col = aij->colmap[idxn[j]] - 1; 750b1fc9764SSatish Balay #endif 751e60e1c95SSatish Balay if ((col < 0) || (aij->garray[col] != idxn[j])) *(v + i * n + j) = 0.0; 75248a46eb9SPierre Jolivet else PetscCall(MatGetValues(aij->B, 1, &row, 1, &col, v + i * n + j)); 753b49de8d1SLois Curfman McInnes } 754b49de8d1SLois Curfman McInnes } 755b49de8d1SLois Curfman McInnes } 7563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 757b49de8d1SLois Curfman McInnes } 758bc5ccf88SSatish Balay 759ba38deedSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIAIJ(Mat mat, MatAssemblyType mode) 760d71ae5a4SJacob Faibussowitsch { 761bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 762b1d57f15SBarry Smith PetscInt nstash, reallocs; 763bc5ccf88SSatish Balay 764bc5ccf88SSatish Balay PetscFunctionBegin; 7653ba16761SJacob Faibussowitsch if (aij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 766bc5ccf88SSatish Balay 7679566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 7689566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 769799b351eSPierre Jolivet PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 7703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771bc5ccf88SSatish Balay } 772bc5ccf88SSatish Balay 773d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIAIJ(Mat mat, MatAssemblyType mode) 774d71ae5a4SJacob Faibussowitsch { 775bc5ccf88SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 776b1d57f15SBarry Smith PetscMPIInt n; 777b1d57f15SBarry Smith PetscInt i, j, rstart, ncols, flg; 778e44c0bd4SBarry Smith PetscInt *row, *col; 779c0edf612SJunchao Zhang PetscBool all_assembled; 78087828ca2SBarry Smith PetscScalar *val; 781bc5ccf88SSatish Balay 78291c97fd4SSatish Balay /* do not use 'b = (Mat_SeqAIJ*)aij->B->data' as B can be reset in disassembly */ 7836e111a19SKarl Rupp 784bc5ccf88SSatish Balay PetscFunctionBegin; 7854cb17eb5SBarry Smith if (!aij->donotstash && !mat->nooffprocentries) { 786a2d1c673SSatish Balay while (1) { 7879566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 788a2d1c673SSatish Balay if (!flg) break; 789a2d1c673SSatish Balay 790bc5ccf88SSatish Balay for (i = 0; i < n;) { 791bc5ccf88SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 7922205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 7932205254eSKarl Rupp if (row[j] != rstart) break; 7942205254eSKarl Rupp } 795bc5ccf88SSatish Balay if (j < n) ncols = j - i; 796bc5ccf88SSatish Balay else ncols = n - i; 797bc5ccf88SSatish Balay /* Now assemble all these values with a single function call */ 7989566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 799bc5ccf88SSatish Balay i = j; 800bc5ccf88SSatish Balay } 801bc5ccf88SSatish Balay } 8029566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 803bc5ccf88SSatish Balay } 8048c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 805c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU) aij->A->offloadmask = PETSC_OFFLOAD_CPU; 8069ecce9b1SRichard Tran Mills /* We call MatBindToCPU() on aij->A and aij->B here, because if MatBindToCPU_MPIAIJ() is called before assembly, it cannot bind these. */ 8079ecce9b1SRichard Tran Mills if (mat->boundtocpu) { 8089566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->A, PETSC_TRUE)); 8099566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(aij->B, PETSC_TRUE)); 8109ecce9b1SRichard Tran Mills } 811e2cf4d64SStefano Zampini #endif 8129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->A, mode)); 8139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->A, mode)); 814bc5ccf88SSatish Balay 815b638e6b4SJunchao Zhang /* determine if any process has disassembled, if so we must 816071fcb05SBarry Smith also disassemble ourself, in order that we may reassemble. */ 817bc5ccf88SSatish Balay /* 818bc5ccf88SSatish Balay if nonzero structure of submatrix B cannot change then we know that 819b638e6b4SJunchao Zhang no process disassembled thus we can skip this stuff 820bc5ccf88SSatish Balay */ 821bc5ccf88SSatish Balay if (!((Mat_SeqAIJ *)aij->B->data)->nonew) { 8225440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 823c0edf612SJunchao Zhang if (mat->was_assembled && !all_assembled) { /* mat on this rank has reduced off-diag B with local col ids, but globally it does not */ 824eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 825ad59fb31SSatish Balay } 826ad59fb31SSatish Balay } 82748a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 8289566063dSJacob Faibussowitsch PetscCall(MatSetOption(aij->B, MAT_USE_INODES, PETSC_FALSE)); 8298c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 830c70f7ee4SJunchao Zhang if (mat->offloadmask == PETSC_OFFLOAD_CPU && aij->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) aij->B->offloadmask = PETSC_OFFLOAD_CPU; 831e2cf4d64SStefano Zampini #endif 8329566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(aij->B, mode)); 8339566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(aij->B, mode)); 834bc5ccf88SSatish Balay 8359566063dSJacob Faibussowitsch PetscCall(PetscFree2(aij->rowvalues, aij->rowindices)); 8362205254eSKarl Rupp 837f4259b30SLisandro Dalcin aij->rowvalues = NULL; 838a30b2313SHong Zhang 8399566063dSJacob Faibussowitsch PetscCall(VecDestroy(&aij->diag)); 840e56f5c9eSBarry Smith 8414f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 842f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqAIJ *)aij->A->data)->nonew) { 843e56f5c9eSBarry Smith PetscObjectState state = aij->A->nonzerostate + aij->B->nonzerostate; 844462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 845e56f5c9eSBarry Smith } 8468c3ff71bSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 847c70f7ee4SJunchao Zhang mat->offloadmask = PETSC_OFFLOAD_BOTH; 848e2cf4d64SStefano Zampini #endif 8493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 850bc5ccf88SSatish Balay } 851bc5ccf88SSatish Balay 852ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIAIJ(Mat A) 853d71ae5a4SJacob Faibussowitsch { 85444a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 8553a40ed3dSBarry Smith 8563a40ed3dSBarry Smith PetscFunctionBegin; 8579566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 8589566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 8593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8601eb62cbbSBarry Smith } 8611eb62cbbSBarry Smith 862ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 863d71ae5a4SJacob Faibussowitsch { 8641b1dd7adSMatthew G. Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 8651b1dd7adSMatthew G. Knepley PetscInt *lrows; 8666e520ac8SStefano Zampini PetscInt r, len; 8679939a2d1SBarry Smith PetscBool cong; 8681eb62cbbSBarry Smith 8693a40ed3dSBarry Smith PetscFunctionBegin; 8706e520ac8SStefano Zampini /* get locally owned rows */ 8719566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 8729566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 873dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 87497b48c8fSBarry Smith if (x && b) { 8751b1dd7adSMatthew G. Knepley const PetscScalar *xx; 8761b1dd7adSMatthew G. Knepley PetscScalar *bb; 8771b1dd7adSMatthew G. Knepley 87828b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 8799566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 8809566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 8811b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 8829566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 8839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 88497b48c8fSBarry Smith } 885a92ad425SStefano Zampini 886a92ad425SStefano Zampini if (diag != 0.0 && cong) { 8879566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, diag, NULL, NULL)); 8889566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 889a92ad425SStefano Zampini } else if (diag != 0.0) { /* non-square or non congruent layouts -> if keepnonzeropattern is false, we allow for new insertion */ 890a92ad425SStefano Zampini Mat_SeqAIJ *aijA = (Mat_SeqAIJ *)mat->A->data; 891a92ad425SStefano Zampini Mat_SeqAIJ *aijB = (Mat_SeqAIJ *)mat->B->data; 892a92ad425SStefano Zampini PetscInt nnwA, nnwB; 893a92ad425SStefano Zampini PetscBool nnzA, nnzB; 894a92ad425SStefano Zampini 895a92ad425SStefano Zampini nnwA = aijA->nonew; 896a92ad425SStefano Zampini nnwB = aijB->nonew; 897a92ad425SStefano Zampini nnzA = aijA->keepnonzeropattern; 898a92ad425SStefano Zampini nnzB = aijB->keepnonzeropattern; 899a92ad425SStefano Zampini if (!nnzA) { 9009566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->A, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on diagonal block.\n")); 901a92ad425SStefano Zampini aijA->nonew = 0; 902a92ad425SStefano Zampini } 903a92ad425SStefano Zampini if (!nnzB) { 9049566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat->B, "Requested to not keep the pattern and add a nonzero diagonal; may encounter reallocations on off-diagonal block.\n")); 905a92ad425SStefano Zampini aijB->nonew = 0; 906a92ad425SStefano Zampini } 907a92ad425SStefano Zampini /* Must zero here before the next loop */ 9089566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9099566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9101b1dd7adSMatthew G. Knepley for (r = 0; r < len; ++r) { 9111b1dd7adSMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 912a92ad425SStefano Zampini if (row >= A->cmap->N) continue; 9139566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 914e2d53e46SBarry Smith } 915a92ad425SStefano Zampini aijA->nonew = nnwA; 916a92ad425SStefano Zampini aijB->nonew = nnwB; 9176eb55b6aSBarry Smith } else { 9189566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->A, len, lrows, 0.0, NULL, NULL)); 9199566063dSJacob Faibussowitsch PetscCall(MatZeroRows(mat->B, len, lrows, 0.0, NULL, NULL)); 9206eb55b6aSBarry Smith } 9219566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 9229566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 9239566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 9244f9cfa9eSBarry Smith 9259939a2d1SBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 926f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)mat->A->data)->keepnonzeropattern || !((Mat_SeqAIJ *)mat->A->data)->nonew) { 9279939a2d1SBarry Smith PetscObjectState state = mat->A->nonzerostate + mat->B->nonzerostate; 928462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 9299939a2d1SBarry Smith } 9303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9311eb62cbbSBarry Smith } 9321eb62cbbSBarry Smith 933ba38deedSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 934d71ae5a4SJacob Faibussowitsch { 9359c7c4993SBarry Smith Mat_MPIAIJ *l = (Mat_MPIAIJ *)A->data; 9366497c311SBarry Smith PetscInt n = A->rmap->n; 937131c27b5Sprj- PetscInt i, j, r, m, len = 0; 93854bd4135SMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 939131c27b5Sprj- PetscMPIInt p = 0; 94054bd4135SMatthew G. Knepley PetscSFNode *rrows; 94154bd4135SMatthew G. Knepley PetscSF sf; 9429c7c4993SBarry Smith const PetscScalar *xx; 943fff043a9SJunchao Zhang PetscScalar *bb, *mask, *aij_a; 944564f14d6SBarry Smith Vec xmask, lmask; 945564f14d6SBarry Smith Mat_SeqAIJ *aij = (Mat_SeqAIJ *)l->B->data; 946564f14d6SBarry Smith const PetscInt *aj, *ii, *ridx; 947564f14d6SBarry Smith PetscScalar *aa; 9489c7c4993SBarry Smith 9499c7c4993SBarry Smith PetscFunctionBegin; 95054bd4135SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 9519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 95254bd4135SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 9539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 95454bd4135SMatthew G. Knepley for (r = 0; r < N; ++r) { 95554bd4135SMatthew G. Knepley const PetscInt idx = rows[r]; 956aed4548fSBarry Smith PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 9575ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 9589566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 9595ba17502SJed Brown } 96054bd4135SMatthew G. Knepley rrows[r].rank = p; 96154bd4135SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 9629c7c4993SBarry Smith } 9639566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 9649566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 96554bd4135SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 9669566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9679566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 9689566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 96954bd4135SMatthew G. Knepley /* Compress and put in row numbers */ 9709371c9d4SSatish Balay for (r = 0; r < n; ++r) 9719371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 972564f14d6SBarry Smith /* zero diagonal part of matrix */ 9739566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 9744cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 9759566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 9769566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 9779566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 97854bd4135SMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 9799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 9809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9819566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 9829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 983a92ad425SStefano Zampini if (x && b) { /* this code is buggy when the row and column layout don't match */ 984a92ad425SStefano Zampini PetscBool cong; 985a92ad425SStefano Zampini 9869566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 98728b400f6SJacob Faibussowitsch PetscCheck(cong, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Need matching row/col layout"); 9889566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9899566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 9909566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 9919566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 992377aa5a1SBarry Smith } 9939566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 9944cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 9959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(l->B, &aij_a)); 996564f14d6SBarry Smith ii = aij->i; 9978e3a54c0SPierre Jolivet for (i = 0; i < len; i++) PetscCall(PetscArrayzero(PetscSafePointerPlusOffset(aij_a, ii[lrows[i]]), ii[lrows[i] + 1] - ii[lrows[i]])); 998564f14d6SBarry Smith /* loop over all elements of off process part of matrix zeroing removed columns*/ 999564f14d6SBarry Smith if (aij->compressedrow.use) { 1000564f14d6SBarry Smith m = aij->compressedrow.nrows; 1001564f14d6SBarry Smith ii = aij->compressedrow.i; 1002564f14d6SBarry Smith ridx = aij->compressedrow.rindex; 1003564f14d6SBarry Smith for (i = 0; i < m; i++) { 1004564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1005564f14d6SBarry Smith aj = aij->j + ii[i]; 1006fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1007564f14d6SBarry Smith 1008564f14d6SBarry Smith for (j = 0; j < n; j++) { 100925266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1010377aa5a1SBarry Smith if (b) bb[*ridx] -= *aa * xx[*aj]; 1011564f14d6SBarry Smith *aa = 0.0; 1012564f14d6SBarry Smith } 1013564f14d6SBarry Smith aa++; 1014564f14d6SBarry Smith aj++; 1015564f14d6SBarry Smith } 1016564f14d6SBarry Smith ridx++; 1017564f14d6SBarry Smith } 1018564f14d6SBarry Smith } else { /* do not use compressed row format */ 1019564f14d6SBarry Smith m = l->B->rmap->n; 1020564f14d6SBarry Smith for (i = 0; i < m; i++) { 1021564f14d6SBarry Smith n = ii[i + 1] - ii[i]; 1022564f14d6SBarry Smith aj = aij->j + ii[i]; 1023fff043a9SJunchao Zhang aa = aij_a + ii[i]; 1024564f14d6SBarry Smith for (j = 0; j < n; j++) { 102525266a92SSatish Balay if (PetscAbsScalar(mask[*aj])) { 1026377aa5a1SBarry Smith if (b) bb[i] -= *aa * xx[*aj]; 1027564f14d6SBarry Smith *aa = 0.0; 1028564f14d6SBarry Smith } 1029564f14d6SBarry Smith aa++; 1030564f14d6SBarry Smith aj++; 1031564f14d6SBarry Smith } 1032564f14d6SBarry Smith } 1033564f14d6SBarry Smith } 1034a92ad425SStefano Zampini if (x && b) { 10359566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 10369566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 1037377aa5a1SBarry Smith } 10389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(l->B, &aij_a)); 10399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 10409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 10419566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 10424f9cfa9eSBarry Smith 10434f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1044f4f49eeaSPierre Jolivet if (!((Mat_SeqAIJ *)l->A->data)->nonew) { 10454f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1046462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 10474f9cfa9eSBarry Smith } 10483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10499c7c4993SBarry Smith } 10509c7c4993SBarry Smith 1051ba38deedSJacob Faibussowitsch static PetscErrorCode MatMult_MPIAIJ(Mat A, Vec xx, Vec yy) 1052d71ae5a4SJacob Faibussowitsch { 1053416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1054b1d57f15SBarry Smith PetscInt nt; 105519b3b6edSHong Zhang VecScatter Mvctx = a->Mvctx; 1056416022c9SBarry Smith 10573a40ed3dSBarry Smith PetscFunctionBegin; 10589566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 105908401ef6SPierre Jolivet PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A (%" PetscInt_FMT ") and xx (%" PetscInt_FMT ")", A->cmap->n, nt); 10609566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1061296d8154SBarry Smith PetscUseTypeMethod(a->A, mult, xx, yy); 10629566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1063296d8154SBarry Smith PetscUseTypeMethod(a->B, multadd, a->lvec, yy, yy); 10643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10651eb62cbbSBarry Smith } 10661eb62cbbSBarry Smith 1067ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultDiagonalBlock_MPIAIJ(Mat A, Vec bb, Vec xx) 1068d71ae5a4SJacob Faibussowitsch { 1069bd0c2dcbSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1070bd0c2dcbSBarry Smith 1071bd0c2dcbSBarry Smith PetscFunctionBegin; 10729566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(a->A, bb, xx)); 10733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1074bd0c2dcbSBarry Smith } 1075bd0c2dcbSBarry Smith 1076ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1077d71ae5a4SJacob Faibussowitsch { 1078416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 107901ad2aeeSHong Zhang VecScatter Mvctx = a->Mvctx; 10803a40ed3dSBarry Smith 10813a40ed3dSBarry Smith PetscFunctionBegin; 10829566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10839566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 10849566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 10859566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 10863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1087da3a660dSBarry Smith } 1088da3a660dSBarry Smith 1089ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIAIJ(Mat A, Vec xx, Vec yy) 1090d71ae5a4SJacob Faibussowitsch { 1091416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1092da3a660dSBarry Smith 10933a40ed3dSBarry Smith PetscFunctionBegin; 1094da3a660dSBarry Smith /* do nondiagonal part */ 10959566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1096da3a660dSBarry Smith /* do local part */ 10979566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 10989613dc34SJunchao Zhang /* add partial results together */ 10999566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11009566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 11013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1102da3a660dSBarry Smith } 1103da3a660dSBarry Smith 1104ba38deedSJacob Faibussowitsch static PetscErrorCode MatIsTranspose_MPIAIJ(Mat Amat, Mat Bmat, PetscReal tol, PetscBool *f) 1105d71ae5a4SJacob Faibussowitsch { 11064f423910Svictorle MPI_Comm comm; 1107ad79cf63SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)Amat->data, *Bij = (Mat_MPIAIJ *)Bmat->data; 1108ad79cf63SBarry Smith Mat Adia = Aij->A, Bdia = Bij->A, Aoff, Boff, *Aoffs, *Boffs; 1109cd0d46ebSvictorle IS Me, Notme; 1110b1d57f15SBarry Smith PetscInt M, N, first, last, *notme, i; 111154d735aeSStefano Zampini PetscBool lf; 1112b1d57f15SBarry Smith PetscMPIInt size; 1113cd0d46ebSvictorle 1114cd0d46ebSvictorle PetscFunctionBegin; 111542e5f5b4Svictorle /* Easy test: symmetric diagonal block */ 11169566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Adia, Bdia, tol, &lf)); 11175440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&lf, f, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)Amat))); 11183ba16761SJacob Faibussowitsch if (!*f) PetscFunctionReturn(PETSC_SUCCESS); 11199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 11209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 11213ba16761SJacob Faibussowitsch if (size == 1) PetscFunctionReturn(PETSC_SUCCESS); 112242e5f5b4Svictorle 11237dae84e0SHong Zhang /* Hard test: off-diagonal block. This takes a MatCreateSubMatrix. */ 11249566063dSJacob Faibussowitsch PetscCall(MatGetSize(Amat, &M, &N)); 11259566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(Amat, &first, &last)); 11269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N - last + first, ¬me)); 1127cd0d46ebSvictorle for (i = 0; i < first; i++) notme[i] = i; 1128cd0d46ebSvictorle for (i = last; i < M; i++) notme[i - last + first] = i; 11299566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(MPI_COMM_SELF, N - last + first, notme, PETSC_COPY_VALUES, &Notme)); 11309566063dSJacob Faibussowitsch PetscCall(ISCreateStride(MPI_COMM_SELF, last - first, first, 1, &Me)); 11319566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Amat, 1, &Me, &Notme, MAT_INITIAL_MATRIX, &Aoffs)); 113266501d38Svictorle Aoff = Aoffs[0]; 11339566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(Bmat, 1, &Notme, &Me, MAT_INITIAL_MATRIX, &Boffs)); 113466501d38Svictorle Boff = Boffs[0]; 11359566063dSJacob Faibussowitsch PetscCall(MatIsTranspose(Aoff, Boff, tol, f)); 11369566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Aoffs)); 11379566063dSJacob Faibussowitsch PetscCall(MatDestroyMatrices(1, &Boffs)); 11389566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Me)); 11399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&Notme)); 11409566063dSJacob Faibussowitsch PetscCall(PetscFree(notme)); 11413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1142cd0d46ebSvictorle } 1143cd0d46ebSvictorle 1144ba38deedSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1145d71ae5a4SJacob Faibussowitsch { 1146416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1147da3a660dSBarry Smith 11483a40ed3dSBarry Smith PetscFunctionBegin; 1149da3a660dSBarry Smith /* do nondiagonal part */ 11509566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1151da3a660dSBarry Smith /* do local part */ 11529566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 11539613dc34SJunchao Zhang /* add partial results together */ 11549566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11559566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 11563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1157da3a660dSBarry Smith } 1158da3a660dSBarry Smith 11591eb62cbbSBarry Smith /* 11601eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 11611eb62cbbSBarry Smith diagonal block 11621eb62cbbSBarry Smith */ 1163ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIAIJ(Mat A, Vec v) 1164d71ae5a4SJacob Faibussowitsch { 1165416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11663a40ed3dSBarry Smith 11673a40ed3dSBarry Smith PetscFunctionBegin; 116808401ef6SPierre Jolivet PetscCheck(A->rmap->N == A->cmap->N, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 1169aed4548fSBarry Smith PetscCheck(A->rmap->rstart == A->cmap->rstart && A->rmap->rend == A->cmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "row partition must equal col partition"); 11709566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(a->A, v)); 11713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11721eb62cbbSBarry Smith } 11731eb62cbbSBarry Smith 1174ba38deedSJacob Faibussowitsch static PetscErrorCode MatScale_MPIAIJ(Mat A, PetscScalar aa) 1175d71ae5a4SJacob Faibussowitsch { 1176052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 11773a40ed3dSBarry Smith 11783a40ed3dSBarry Smith PetscFunctionBegin; 11799566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 11809566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 11813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1182052efed2SBarry Smith } 1183052efed2SBarry Smith 1184ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 1185d71ae5a4SJacob Faibussowitsch { 11868e2fed03SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 11878e2fed03SBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *)aij->A->data; 11888e2fed03SBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ *)aij->B->data; 11893ea6fe3dSLisandro Dalcin const PetscInt *garray = aij->garray; 11902e5835c6SStefano Zampini const PetscScalar *aa, *ba; 119117a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, cnt, i, ja, jb; 119217a3732bSBarry Smith PetscInt64 nz, hnz; 11933ea6fe3dSLisandro Dalcin PetscInt *rowlens; 11943ea6fe3dSLisandro Dalcin PetscInt *colidxs; 11953ea6fe3dSLisandro Dalcin PetscScalar *matvals; 119617a3732bSBarry Smith PetscMPIInt rank; 11978e2fed03SBarry Smith 11988e2fed03SBarry Smith PetscFunctionBegin; 11999566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 12003ea6fe3dSLisandro Dalcin 12013ea6fe3dSLisandro Dalcin M = mat->rmap->N; 12023ea6fe3dSLisandro Dalcin N = mat->cmap->N; 12033ea6fe3dSLisandro Dalcin m = mat->rmap->n; 12043ea6fe3dSLisandro Dalcin rs = mat->rmap->rstart; 12053ea6fe3dSLisandro Dalcin cs = mat->cmap->rstart; 12068e2fed03SBarry Smith nz = A->nz + B->nz; 12073ea6fe3dSLisandro Dalcin 12083ea6fe3dSLisandro Dalcin /* write matrix header */ 12090700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 12109371c9d4SSatish Balay header[1] = M; 12119371c9d4SSatish Balay header[2] = N; 121217a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 121317a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 1214835f2295SStefano Zampini if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 12159566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 12168e2fed03SBarry Smith 12173ea6fe3dSLisandro Dalcin /* fill in and store row lengths */ 12189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 12193ea6fe3dSLisandro Dalcin for (i = 0; i < m; i++) rowlens[i] = A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]; 12209566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 12219566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 12228e2fed03SBarry Smith 12233ea6fe3dSLisandro Dalcin /* fill in and store column indices */ 12249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 12253ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12263ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12273ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12283ea6fe3dSLisandro Dalcin colidxs[cnt++] = garray[B->j[jb]]; 12298e2fed03SBarry Smith } 12309371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) colidxs[cnt++] = A->j[ja] + cs; 12319371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) colidxs[cnt++] = garray[B->j[jb]]; 12328e2fed03SBarry Smith } 123317a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12349566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 12359566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 12368e2fed03SBarry Smith 12373ea6fe3dSLisandro Dalcin /* fill in and store nonzero values */ 12389566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &aa)); 12399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &ba)); 12409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 12413ea6fe3dSLisandro Dalcin for (cnt = 0, i = 0; i < m; i++) { 12423ea6fe3dSLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 12433ea6fe3dSLisandro Dalcin if (garray[B->j[jb]] > cs) break; 12442e5835c6SStefano Zampini matvals[cnt++] = ba[jb]; 12458e2fed03SBarry Smith } 12469371c9d4SSatish Balay for (ja = A->i[i]; ja < A->i[i + 1]; ja++) matvals[cnt++] = aa[ja]; 12479371c9d4SSatish Balay for (; jb < B->i[i + 1]; jb++) matvals[cnt++] = ba[jb]; 12488e2fed03SBarry Smith } 12499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &aa)); 12509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &ba)); 125117a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 12529566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 12539566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 12548e2fed03SBarry Smith 12553ea6fe3dSLisandro Dalcin /* write block size option to the viewer's .info file */ 12569566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12588e2fed03SBarry Smith } 12598e2fed03SBarry Smith 12609804daf3SBarry Smith #include <petscdraw.h> 1261ba38deedSJacob Faibussowitsch static PetscErrorCode MatView_MPIAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1262d71ae5a4SJacob Faibussowitsch { 126344a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 126432dcc486SBarry Smith PetscMPIInt rank = aij->rank, size = aij->size; 12659f196a02SMartin Diehl PetscBool isdraw, isascii, isbinary; 1266b0a32e0cSBarry Smith PetscViewer sviewer; 1267f3ef73ceSBarry Smith PetscViewerFormat format; 1268416022c9SBarry Smith 12693a40ed3dSBarry Smith PetscFunctionBegin; 12709566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12719f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 12739f196a02SMartin Diehl if (isascii) { 12749566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1275ef5fdb51SBarry Smith if (format == PETSC_VIEWER_LOAD_BALANCE) { 12761690c2aeSBarry Smith PetscInt i, nmax = 0, nmin = PETSC_INT_MAX, navg = 0, *nz, nzlocal = ((Mat_SeqAIJ *)aij->A->data)->nz + ((Mat_SeqAIJ *)aij->B->data)->nz; 12779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &nz)); 12789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgather(&nzlocal, 1, MPIU_INT, nz, 1, MPIU_INT, PetscObjectComm((PetscObject)mat))); 1279835f2295SStefano Zampini for (i = 0; i < size; i++) { 1280ef5fdb51SBarry Smith nmax = PetscMax(nmax, nz[i]); 1281ef5fdb51SBarry Smith nmin = PetscMin(nmin, nz[i]); 1282ef5fdb51SBarry Smith navg += nz[i]; 1283ef5fdb51SBarry Smith } 12849566063dSJacob Faibussowitsch PetscCall(PetscFree(nz)); 1285ef5fdb51SBarry Smith navg = navg / size; 12869566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Load Balance - Nonzeros: Min %" PetscInt_FMT " avg %" PetscInt_FMT " max %" PetscInt_FMT "\n", nmin, navg, nmax)); 12873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1288ef5fdb51SBarry Smith } 12899566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1290456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 12914e220ebcSLois Curfman McInnes MatInfo info; 12926335e310SSatish Balay PetscInt *inodes = NULL; 1293923f20ffSKris Buschelman 12949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 12959566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 12969566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, NULL, &inodes, NULL)); 12979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 1298923f20ffSKris Buschelman if (!inodes) { 12999371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, not using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1300835f2295SStefano Zampini info.memory)); 13016831982aSBarry Smith } else { 1302835f2295SStefano Zampini PetscCall( 1303835f2295SStefano Zampini PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %g, using I-node routines\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, info.memory)); 13046831982aSBarry Smith } 13059566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->A, MAT_LOCAL, &info)); 13069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13079566063dSJacob Faibussowitsch PetscCall(MatGetInfo(aij->B, MAT_LOCAL, &info)); 13089566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 13099566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 13109566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 13119566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 13129566063dSJacob Faibussowitsch PetscCall(VecScatterView(aij->Mvctx, viewer)); 13133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1314fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1315923f20ffSKris Buschelman PetscInt inodecount, inodelimit, *inodes; 13169566063dSJacob Faibussowitsch PetscCall(MatInodeGetInodeSizes(aij->A, &inodecount, &inodes, &inodelimit)); 1317923f20ffSKris Buschelman if (inodes) { 13189566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "using I-node (on process 0) routines: found %" PetscInt_FMT " nodes, limit used is %" PetscInt_FMT "\n", inodecount, inodelimit)); 1319d38fa0fbSBarry Smith } else { 13209566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "not using I-node (on process 0) routines\n")); 1321d38fa0fbSBarry Smith } 13223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13234aedb280SBarry Smith } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 13243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 132508480c60SBarry Smith } 13268e2fed03SBarry Smith } else if (isbinary) { 13278e2fed03SBarry Smith if (size == 1) { 13289566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13299566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13308e2fed03SBarry Smith } else { 13319566063dSJacob Faibussowitsch PetscCall(MatView_MPIAIJ_Binary(mat, viewer)); 13328e2fed03SBarry Smith } 13333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13349f196a02SMartin Diehl } else if (isascii && size == 1) { 13359566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij->A, ((PetscObject)mat)->name)); 13369566063dSJacob Faibussowitsch PetscCall(MatView(aij->A, viewer)); 13373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13380f5bd95cSBarry Smith } else if (isdraw) { 1339b0a32e0cSBarry Smith PetscDraw draw; 1340ace3abfcSBarry Smith PetscBool isnull; 13419566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 13429566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 13433ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 134419bcc07fSBarry Smith } 134519bcc07fSBarry Smith 134671e56450SStefano Zampini { /* assemble the entire matrix onto first processor */ 134771e56450SStefano Zampini Mat A = NULL, Av; 134871e56450SStefano Zampini IS isrow, iscol; 13492ee70a88SLois Curfman McInnes 13509566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->rmap->N : 0, 0, 1, &isrow)); 13519566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat), rank == 0 ? mat->cmap->N : 0, 0, 1, &iscol)); 13529566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix(mat, isrow, iscol, MAT_INITIAL_MATRIX, &A)); 13539566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Av, NULL, NULL)); 135471e56450SStefano Zampini /* The commented code uses MatCreateSubMatrices instead */ 135571e56450SStefano Zampini /* 135671e56450SStefano Zampini Mat *AA, A = NULL, Av; 135771e56450SStefano Zampini IS isrow,iscol; 135871e56450SStefano Zampini 13599566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->rmap->N : 0,0,1,&isrow)); 13609566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PetscObjectComm((PetscObject)mat),rank == 0 ? mat->cmap->N : 0,0,1,&iscol)); 13619566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&AA)); 1362dd400576SPatrick Sanan if (rank == 0) { 13639566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)AA[0])); 136471e56450SStefano Zampini A = AA[0]; 136571e56450SStefano Zampini Av = AA[0]; 136695373324SBarry Smith } 13679566063dSJacob Faibussowitsch PetscCall(MatDestroySubMatrices(1,&AA)); 136871e56450SStefano Zampini */ 13699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol)); 13709566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow)); 137155843e3eSBarry Smith /* 137255843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1373b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 137455843e3eSBarry Smith */ 13759566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 1376dd400576SPatrick Sanan if (rank == 0) { 137748a46eb9SPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)Av, ((PetscObject)mat)->name)); 13789566063dSJacob Faibussowitsch PetscCall(MatView_SeqAIJ(Av, sviewer)); 137995373324SBarry Smith } 13809566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 13819566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 138295373324SBarry Smith } 13833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13841eb62cbbSBarry Smith } 13851eb62cbbSBarry Smith 1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIAIJ(Mat mat, PetscViewer viewer) 1387d71ae5a4SJacob Faibussowitsch { 13889f196a02SMartin Diehl PetscBool isascii, isdraw, issocket, isbinary; 1389416022c9SBarry Smith 13903a40ed3dSBarry Smith PetscFunctionBegin; 13919f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 13929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 13939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 13949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 13959f196a02SMartin Diehl if (isascii || isdraw || isbinary || issocket) PetscCall(MatView_MPIAIJ_ASCIIorDraworSocket(mat, viewer)); 13963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1397416022c9SBarry Smith } 1398416022c9SBarry Smith 1399ba38deedSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 1400d71ae5a4SJacob Faibussowitsch { 140144a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1402f4259b30SLisandro Dalcin Vec bb1 = NULL; 1403ace3abfcSBarry Smith PetscBool hasop; 14048a729477SBarry Smith 14053a40ed3dSBarry Smith PetscFunctionBegin; 1406a2b30743SBarry Smith if (flag == SOR_APPLY_UPPER) { 14079566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1409a2b30743SBarry Smith } 1410a2b30743SBarry Smith 141148a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS || flag & SOR_EISENSTAT) PetscCall(VecDuplicate(bb, &bb1)); 14124e980039SJed Brown 1413c16cb8f2SBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 1414da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14159566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14162798e883SHong Zhang its--; 1417da3a660dSBarry Smith } 14182798e883SHong Zhang 14192798e883SHong Zhang while (its--) { 14209566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14219566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14222798e883SHong Zhang 1423c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14249566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14259566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14262798e883SHong Zhang 1427c14dc6b6SHong Zhang /* local sweep */ 14289566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 14292798e883SHong Zhang } 14303a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 1431da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14329566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14332798e883SHong Zhang its--; 1434da3a660dSBarry Smith } 14352798e883SHong Zhang while (its--) { 14369566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14379566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14382798e883SHong Zhang 1439c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14409566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14419566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 1442c14dc6b6SHong Zhang 1443c14dc6b6SHong Zhang /* local sweep */ 14449566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 14452798e883SHong Zhang } 14463a40ed3dSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 1447da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 14489566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 14492798e883SHong Zhang its--; 1450da3a660dSBarry Smith } 14512798e883SHong Zhang while (its--) { 14529566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14539566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14542798e883SHong Zhang 1455c14dc6b6SHong Zhang /* update rhs: bb1 = bb - B*x */ 14569566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 14579566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 14582798e883SHong Zhang 1459c14dc6b6SHong Zhang /* local sweep */ 14609566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 14612798e883SHong Zhang } 1462a7420bb7SBarry Smith } else if (flag & SOR_EISENSTAT) { 1463a7420bb7SBarry Smith Vec xx1; 1464a7420bb7SBarry Smith 14659566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb, &xx1)); 14669566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_BACKWARD_SWEEP), fshift, lits, 1, xx)); 1467a7420bb7SBarry Smith 14689566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 14699566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1470a7420bb7SBarry Smith if (!mat->diag) { 14719566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(matin, &mat->diag, NULL)); 14729566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(matin, mat->diag)); 1473a7420bb7SBarry Smith } 14749566063dSJacob Faibussowitsch PetscCall(MatHasOperation(matin, MATOP_MULT_DIAGONAL_BLOCK, &hasop)); 1475bd0c2dcbSBarry Smith if (hasop) { 14769566063dSJacob Faibussowitsch PetscCall(MatMultDiagonalBlock(matin, xx, bb1)); 1477bd0c2dcbSBarry Smith } else { 14789566063dSJacob Faibussowitsch PetscCall(VecPointwiseMult(bb1, mat->diag, xx)); 1479bd0c2dcbSBarry Smith } 14809566063dSJacob Faibussowitsch PetscCall(VecAYPX(bb1, (omega - 2.0) / omega, bb)); 1481887ee2caSBarry Smith 14829566063dSJacob Faibussowitsch PetscCall(MatMultAdd(mat->B, mat->lvec, bb1, bb1)); 1483a7420bb7SBarry Smith 1484a7420bb7SBarry Smith /* local sweep */ 14859566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, (MatSORType)(SOR_ZERO_INITIAL_GUESS | SOR_LOCAL_FORWARD_SWEEP), fshift, lits, 1, xx1)); 14869566063dSJacob Faibussowitsch PetscCall(VecAXPY(xx, 1.0, xx1)); 14879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xx1)); 1488ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel SOR not supported"); 1489c14dc6b6SHong Zhang 14909566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 1491a0808db4SHong Zhang 14927b6c816cSBarry Smith matin->factorerrortype = mat->A->factorerrortype; 14933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14948a729477SBarry Smith } 1495a66be287SLois Curfman McInnes 1496ba38deedSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIAIJ(Mat A, IS rowp, IS colp, Mat *B) 1497d71ae5a4SJacob Faibussowitsch { 149872e6a0cfSJed Brown Mat aA, aB, Aperm; 149972e6a0cfSJed Brown const PetscInt *rwant, *cwant, *gcols, *ai, *bi, *aj, *bj; 150072e6a0cfSJed Brown PetscScalar *aa, *ba; 150172e6a0cfSJed Brown PetscInt i, j, m, n, ng, anz, bnz, *dnnz, *onnz, *tdnnz, *tonnz, *rdest, *cdest, *work, *gcdest; 150272e6a0cfSJed Brown PetscSF rowsf, sf; 15030298fd71SBarry Smith IS parcolp = NULL; 150472e6a0cfSJed Brown PetscBool done; 150542e855d1Svictor 150642e855d1Svictor PetscFunctionBegin; 15079566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &m, &n)); 15089566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rwant)); 15099566063dSJacob Faibussowitsch PetscCall(ISGetIndices(colp, &cwant)); 15109566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(PetscMax(m, n), &work, m, &rdest, n, &cdest)); 151172e6a0cfSJed Brown 151272e6a0cfSJed Brown /* Invert row permutation to find out where my rows should go */ 15139566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &rowsf)); 15149566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(rowsf, A->rmap, A->rmap->n, NULL, PETSC_OWN_POINTER, rwant)); 15159566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(rowsf)); 151672e6a0cfSJed Brown for (i = 0; i < m; i++) work[i] = A->rmap->rstart + i; 15179566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 15189566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(rowsf, MPIU_INT, work, rdest, MPI_REPLACE)); 151972e6a0cfSJed Brown 152072e6a0cfSJed Brown /* Invert column permutation to find out where my columns should go */ 15219566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15229566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, A->cmap->n, NULL, PETSC_OWN_POINTER, cwant)); 15239566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 152472e6a0cfSJed Brown for (i = 0; i < n; i++) work[i] = A->cmap->rstart + i; 15259566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15269566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, work, cdest, MPI_REPLACE)); 15279566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 152872e6a0cfSJed Brown 15299566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rwant)); 15309566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(colp, &cwant)); 15319566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &aA, &aB, &gcols)); 153272e6a0cfSJed Brown 153372e6a0cfSJed Brown /* Find out where my gcols should go */ 15349566063dSJacob Faibussowitsch PetscCall(MatGetSize(aB, NULL, &ng)); 15359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ng, &gcdest)); 15369566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 15379566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, ng, NULL, PETSC_OWN_POINTER, gcols)); 15389566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 15399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, cdest, gcdest, MPI_REPLACE)); 15419566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 154272e6a0cfSJed Brown 15439566063dSJacob Faibussowitsch PetscCall(PetscCalloc4(m, &dnnz, m, &onnz, m, &tdnnz, m, &tonnz)); 15449566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15459566063dSJacob Faibussowitsch PetscCall(MatGetRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 154672e6a0cfSJed Brown for (i = 0; i < m; i++) { 1547131c27b5Sprj- PetscInt row = rdest[i]; 1548131c27b5Sprj- PetscMPIInt rowner; 15499566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, row, &rowner)); 155072e6a0cfSJed Brown for (j = ai[i]; j < ai[i + 1]; j++) { 1551131c27b5Sprj- PetscInt col = cdest[aj[j]]; 1552131c27b5Sprj- PetscMPIInt cowner; 15539566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); /* Could build an index for the columns to eliminate this search */ 155472e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 155572e6a0cfSJed Brown else onnz[i]++; 155672e6a0cfSJed Brown } 155772e6a0cfSJed Brown for (j = bi[i]; j < bi[i + 1]; j++) { 1558131c27b5Sprj- PetscInt col = gcdest[bj[j]]; 1559131c27b5Sprj- PetscMPIInt cowner; 15609566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->cmap, col, &cowner)); 156172e6a0cfSJed Brown if (rowner == cowner) dnnz[i]++; 156272e6a0cfSJed Brown else onnz[i]++; 156372e6a0cfSJed Brown } 156472e6a0cfSJed Brown } 15659566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15669566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, dnnz, tdnnz, MPI_REPLACE)); 15679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15689566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(rowsf, MPIU_INT, onnz, tonnz, MPI_REPLACE)); 15699566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&rowsf)); 157072e6a0cfSJed Brown 15719566063dSJacob Faibussowitsch PetscCall(MatCreateAIJ(PetscObjectComm((PetscObject)A), A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N, 0, tdnnz, 0, tonnz, &Aperm)); 15729566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aA, &aa)); 15739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(aB, &ba)); 157472e6a0cfSJed Brown for (i = 0; i < m; i++) { 157572e6a0cfSJed Brown PetscInt *acols = dnnz, *bcols = onnz; /* Repurpose now-unneeded arrays */ 1576970468b0SJed Brown PetscInt j0, rowlen; 157772e6a0cfSJed Brown rowlen = ai[i + 1] - ai[i]; 1578970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { /* rowlen could be larger than number of rows m, so sum in batches */ 1579970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) acols[j - j0] = cdest[aj[ai[i] + j]]; 15809566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, acols, aa + ai[i] + j0, INSERT_VALUES)); 1581970468b0SJed Brown } 158272e6a0cfSJed Brown rowlen = bi[i + 1] - bi[i]; 1583970468b0SJed Brown for (j0 = j = 0; j < rowlen; j0 = j) { 1584970468b0SJed Brown for (; j < PetscMin(rowlen, j0 + m); j++) bcols[j - j0] = gcdest[bj[bi[i] + j]]; 15859566063dSJacob Faibussowitsch PetscCall(MatSetValues(Aperm, 1, &rdest[i], j - j0, bcols, ba + bi[i] + j0, INSERT_VALUES)); 1586970468b0SJed Brown } 158772e6a0cfSJed Brown } 15889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(Aperm, MAT_FINAL_ASSEMBLY)); 15899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(Aperm, MAT_FINAL_ASSEMBLY)); 15909566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aA, 0, PETSC_FALSE, PETSC_FALSE, &anz, &ai, &aj, &done)); 15919566063dSJacob Faibussowitsch PetscCall(MatRestoreRowIJ(aB, 0, PETSC_FALSE, PETSC_FALSE, &bnz, &bi, &bj, &done)); 15929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aA, &aa)); 15939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(aB, &ba)); 15949566063dSJacob Faibussowitsch PetscCall(PetscFree4(dnnz, onnz, tdnnz, tonnz)); 15959566063dSJacob Faibussowitsch PetscCall(PetscFree3(work, rdest, cdest)); 15969566063dSJacob Faibussowitsch PetscCall(PetscFree(gcdest)); 15979566063dSJacob Faibussowitsch if (parcolp) PetscCall(ISDestroy(&colp)); 159872e6a0cfSJed Brown *B = Aperm; 15993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 160042e855d1Svictor } 160142e855d1Svictor 1602ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 1603d71ae5a4SJacob Faibussowitsch { 1604c5e4d11fSDmitry Karpeev Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1605c5e4d11fSDmitry Karpeev 1606c5e4d11fSDmitry Karpeev PetscFunctionBegin; 16079566063dSJacob Faibussowitsch PetscCall(MatGetSize(aij->B, NULL, nghosts)); 1608c5e4d11fSDmitry Karpeev if (ghosts) *ghosts = aij->garray; 16093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1610c5e4d11fSDmitry Karpeev } 1611c5e4d11fSDmitry Karpeev 1612ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1613d71ae5a4SJacob Faibussowitsch { 1614a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 1615a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 16163966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 1617a66be287SLois Curfman McInnes 16183a40ed3dSBarry Smith PetscFunctionBegin; 16194e220ebcSLois Curfman McInnes info->block_size = 1.0; 16209566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 16212205254eSKarl Rupp 16229371c9d4SSatish Balay isend[0] = info->nz_used; 16239371c9d4SSatish Balay isend[1] = info->nz_allocated; 16249371c9d4SSatish Balay isend[2] = info->nz_unneeded; 16259371c9d4SSatish Balay isend[3] = info->memory; 16269371c9d4SSatish Balay isend[4] = info->mallocs; 16272205254eSKarl Rupp 16289566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 16292205254eSKarl Rupp 16309371c9d4SSatish Balay isend[0] += info->nz_used; 16319371c9d4SSatish Balay isend[1] += info->nz_allocated; 16329371c9d4SSatish Balay isend[2] += info->nz_unneeded; 16339371c9d4SSatish Balay isend[3] += info->memory; 16349371c9d4SSatish Balay isend[4] += info->mallocs; 1635a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 16364e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16374e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16384e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16394e220ebcSLois Curfman McInnes info->memory = isend[3]; 16404e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 1641a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1642462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 16432205254eSKarl Rupp 16444e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16454e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16464e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16474e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16484e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1649a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1650462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 16512205254eSKarl Rupp 16524e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16534e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16544e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16554e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16564e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1657a66be287SLois Curfman McInnes } 16584e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16594e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16604e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1662a66be287SLois Curfman McInnes } 1663a66be287SLois Curfman McInnes 1664d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIAIJ(Mat A, MatOption op, PetscBool flg) 1665d71ae5a4SJacob Faibussowitsch { 1666c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1667c74985f6SBarry Smith 16683a40ed3dSBarry Smith PetscFunctionBegin; 166912c028f9SKris Buschelman switch (op) { 1670512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 167112c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 167228b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1673a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 167412c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16750ad02fcaSStefano Zampini case MAT_USE_INODES: 167612c028f9SKris Buschelman case MAT_IGNORE_ZERO_ENTRIES: 16771a2c6b5cSJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 1678fa1f0d2cSMatthew G Knepley MatCheckPreallocated(A, 1); 16799566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168112c028f9SKris Buschelman break; 168212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 168343674050SBarry Smith MatCheckPreallocated(A, 1); 16844e0d8c25SBarry Smith a->roworiented = flg; 16852205254eSKarl Rupp 16869566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 16879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 168812c028f9SKris Buschelman break; 1689d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1690d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1691d71ae5a4SJacob Faibussowitsch break; 1692c8ca1fbcSVaclav Hapla /* Symmetry flags are handled directly by MatSetOption() and they don't affect preallocation */ 1693ffa07934SHong Zhang case MAT_SPD: 169477e54ba9SKris Buschelman case MAT_SYMMETRIC: 169577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 1696bf108f30SBarry Smith case MAT_HERMITIAN: 1697bf108f30SBarry Smith case MAT_SYMMETRY_ETERNAL: 1698b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1699b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1700b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 17019725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 170277e54ba9SKris Buschelman break; 1703d71ae5a4SJacob Faibussowitsch case MAT_SUBMAT_SINGLEIS: 1704d71ae5a4SJacob Faibussowitsch A->submat_singleis = flg; 1705d71ae5a4SJacob Faibussowitsch break; 1706d71ae5a4SJacob Faibussowitsch default: 1707888c827cSStefano Zampini break; 17083a40ed3dSBarry Smith } 17093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1710c74985f6SBarry Smith } 1711c74985f6SBarry Smith 1712d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1713d71ae5a4SJacob Faibussowitsch { 1714154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *)matin->data; 171587828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1716d0f46423SBarry Smith PetscInt i, *cworkA, *cworkB, **pcA, **pcB, cstart = matin->cmap->rstart; 1717d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, rstart = matin->rmap->rstart, rend = matin->rmap->rend; 1718b1d57f15SBarry Smith PetscInt *cmap, *idx_p; 171939e00950SLois Curfman McInnes 17203a40ed3dSBarry Smith PetscFunctionBegin; 172128b400f6SJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 17227a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 17237a0afa10SBarry Smith 172470f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 17257a0afa10SBarry Smith /* 17267a0afa10SBarry Smith allocate enough space to hold information from the longest row. 17277a0afa10SBarry Smith */ 17287a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *)mat->A->data, *Ba = (Mat_SeqAIJ *)mat->B->data; 1729b1d57f15SBarry Smith PetscInt max = 1, tmp; 1730d0f46423SBarry Smith for (i = 0; i < matin->rmap->n; i++) { 17317a0afa10SBarry Smith tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 17322205254eSKarl Rupp if (max < tmp) max = tmp; 17337a0afa10SBarry Smith } 17349566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max, &mat->rowvalues, max, &mat->rowindices)); 17357a0afa10SBarry Smith } 17367a0afa10SBarry Smith 1737aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Only local rows"); 1738abc0e9e4SLois Curfman McInnes lrow = row - rstart; 173939e00950SLois Curfman McInnes 17409371c9d4SSatish Balay pvA = &vworkA; 17419371c9d4SSatish Balay pcA = &cworkA; 17429371c9d4SSatish Balay pvB = &vworkB; 17439371c9d4SSatish Balay pcB = &cworkB; 17449371c9d4SSatish Balay if (!v) { 17459371c9d4SSatish Balay pvA = NULL; 17469371c9d4SSatish Balay pvB = NULL; 17479371c9d4SSatish Balay } 17489371c9d4SSatish Balay if (!idx) { 17499371c9d4SSatish Balay pcA = NULL; 17509371c9d4SSatish Balay if (!v) pcB = NULL; 17519371c9d4SSatish Balay } 17529566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 17539566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1754154123eaSLois Curfman McInnes nztot = nzA + nzB; 1755154123eaSLois Curfman McInnes 175670f0671dSBarry Smith cmap = mat->garray; 1757154123eaSLois Curfman McInnes if (v || idx) { 1758154123eaSLois Curfman McInnes if (nztot) { 1759154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 1760b1d57f15SBarry Smith PetscInt imark = -1; 1761154123eaSLois Curfman McInnes if (v) { 176270f0671dSBarry Smith *v = v_p = mat->rowvalues; 176339e00950SLois Curfman McInnes for (i = 0; i < nzB; i++) { 176470f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1765154123eaSLois Curfman McInnes else break; 1766154123eaSLois Curfman McInnes } 1767154123eaSLois Curfman McInnes imark = i; 176870f0671dSBarry Smith for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 176970f0671dSBarry Smith for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1770154123eaSLois Curfman McInnes } 1771154123eaSLois Curfman McInnes if (idx) { 177270f0671dSBarry Smith *idx = idx_p = mat->rowindices; 177370f0671dSBarry Smith if (imark > -1) { 1774ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i]]; 177570f0671dSBarry Smith } else { 1776154123eaSLois Curfman McInnes for (i = 0; i < nzB; i++) { 177770f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1778154123eaSLois Curfman McInnes else break; 1779154123eaSLois Curfman McInnes } 1780154123eaSLois Curfman McInnes imark = i; 178170f0671dSBarry Smith } 178270f0671dSBarry Smith for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart + cworkA[i]; 178370f0671dSBarry Smith for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i]]; 178439e00950SLois Curfman McInnes } 17853f97c4b0SBarry Smith } else { 1786f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1787f4259b30SLisandro Dalcin if (v) *v = NULL; 17881ca473b0SSatish Balay } 1789154123eaSLois Curfman McInnes } 179039e00950SLois Curfman McInnes *nz = nztot; 17919566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 17929566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 17933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 179439e00950SLois Curfman McInnes } 179539e00950SLois Curfman McInnes 1796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1797d71ae5a4SJacob Faibussowitsch { 17987a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 17993a40ed3dSBarry Smith 18003a40ed3dSBarry Smith PetscFunctionBegin; 180128b400f6SJacob Faibussowitsch PetscCheck(aij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow() must be called first"); 18027a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 18033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180439e00950SLois Curfman McInnes } 180539e00950SLois Curfman McInnes 1806ba38deedSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIAIJ(Mat mat, NormType type, PetscReal *norm) 1807d71ae5a4SJacob Faibussowitsch { 1808855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 1809ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ *)aij->A->data, *bmat = (Mat_SeqAIJ *)aij->B->data; 181075dbe01dSPierre Jolivet PetscInt i, j; 1811329f5518SBarry Smith PetscReal sum = 0.0; 1812fff043a9SJunchao Zhang const MatScalar *v, *amata, *bmata; 181304ca555eSLois Curfman McInnes 18143a40ed3dSBarry Smith PetscFunctionBegin; 181517699dbbSLois Curfman McInnes if (aij->size == 1) { 18169566063dSJacob Faibussowitsch PetscCall(MatNorm(aij->A, type, norm)); 181737fa93a5SLois Curfman McInnes } else { 18189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->A, &amata)); 18199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(aij->B, &bmata)); 182004ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1821fff043a9SJunchao Zhang v = amata; 182204ca555eSLois Curfman McInnes for (i = 0; i < amat->nz; i++) { 18239371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18249371c9d4SSatish Balay v++; 182504ca555eSLois Curfman McInnes } 1826fff043a9SJunchao Zhang v = bmata; 182704ca555eSLois Curfman McInnes for (i = 0; i < bmat->nz; i++) { 18289371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 18299371c9d4SSatish Balay v++; 183004ca555eSLois Curfman McInnes } 1831462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, norm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 18328f1a2a5eSBarry Smith *norm = PetscSqrtReal(*norm); 18339566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * amat->nz + 2.0 * bmat->nz)); 18343a40ed3dSBarry Smith } else if (type == NORM_1) { /* max column norm */ 18358ba8550cSPierre Jolivet Vec col, bcol; 183675dbe01dSPierre Jolivet PetscScalar *array; 1837b1d57f15SBarry Smith PetscInt *jj, *garray = aij->garray; 183875dbe01dSPierre Jolivet 183975dbe01dSPierre Jolivet PetscCall(MatCreateVecs(mat, &col, NULL)); 184075dbe01dSPierre Jolivet PetscCall(VecSet(col, 0.0)); 184175dbe01dSPierre Jolivet PetscCall(VecGetArrayWrite(col, &array)); 18429371c9d4SSatish Balay v = amata; 18439371c9d4SSatish Balay jj = amat->j; 184475dbe01dSPierre Jolivet for (j = 0; j < amat->nz; j++) array[*jj++] += PetscAbsScalar(*v++); 184575dbe01dSPierre Jolivet PetscCall(VecRestoreArrayWrite(col, &array)); 18468ba8550cSPierre Jolivet PetscCall(MatCreateVecs(aij->B, &bcol, NULL)); 18478ba8550cSPierre Jolivet PetscCall(VecSet(bcol, 0.0)); 18488ba8550cSPierre Jolivet PetscCall(VecGetArrayWrite(bcol, &array)); 18499371c9d4SSatish Balay v = bmata; 18509371c9d4SSatish Balay jj = bmat->j; 18518ba8550cSPierre Jolivet for (j = 0; j < bmat->nz; j++) array[*jj++] += PetscAbsScalar(*v++); 18528ba8550cSPierre Jolivet PetscCall(VecSetValues(col, aij->B->cmap->n, garray, array, ADD_VALUES)); 18538ba8550cSPierre Jolivet PetscCall(VecRestoreArrayWrite(bcol, &array)); 18548ba8550cSPierre Jolivet PetscCall(VecDestroy(&bcol)); 185575dbe01dSPierre Jolivet PetscCall(VecAssemblyBegin(col)); 185675dbe01dSPierre Jolivet PetscCall(VecAssemblyEnd(col)); 185775dbe01dSPierre Jolivet PetscCall(VecNorm(col, NORM_INFINITY, norm)); 185875dbe01dSPierre Jolivet PetscCall(VecDestroy(&col)); 18593a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1860329f5518SBarry Smith PetscReal ntemp = 0.0; 1861d0f46423SBarry Smith for (j = 0; j < aij->A->rmap->n; j++) { 18628e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(amata, amat->i[j]); 186304ca555eSLois Curfman McInnes sum = 0.0; 186404ca555eSLois Curfman McInnes for (i = 0; i < amat->i[j + 1] - amat->i[j]; i++) { 18659371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18669371c9d4SSatish Balay v++; 186704ca555eSLois Curfman McInnes } 18688e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(bmata, bmat->i[j]); 186904ca555eSLois Curfman McInnes for (i = 0; i < bmat->i[j + 1] - bmat->i[j]; i++) { 18709371c9d4SSatish Balay sum += PetscAbsScalar(*v); 18719371c9d4SSatish Balay v++; 187204ca555eSLois Curfman McInnes } 1873515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 187404ca555eSLois Curfman McInnes } 1875462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, norm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 18769566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(PetscMax(amat->nz + bmat->nz - 1, 0))); 1877ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for two norm"); 18789566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->A, &amata)); 18799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(aij->B, &bmata)); 188037fa93a5SLois Curfman McInnes } 18813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1882855ac2c5SLois Curfman McInnes } 1883855ac2c5SLois Curfman McInnes 1884ba38deedSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIAIJ(Mat A, MatReuse reuse, Mat *matout) 1885d71ae5a4SJacob Faibussowitsch { 1886a8661f62Sandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *b; 1887a8661f62Sandi selinger Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *)a->A->data, *Bloc = (Mat_SeqAIJ *)a->B->data, *sub_B_diag; 1888071fcb05SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, ma, na, mb, nb, row, *cols, *cols_tmp, *B_diag_ilen, i, ncol, A_diag_ncol; 1889071fcb05SBarry Smith const PetscInt *ai, *aj, *bi, *bj, *B_diag_i; 1890a8661f62Sandi selinger Mat B, A_diag, *B_diag; 1891ce496241SStefano Zampini const MatScalar *pbv, *bv; 1892b7c46309SBarry Smith 18933a40ed3dSBarry Smith PetscFunctionBegin; 18947fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 18959371c9d4SSatish Balay ma = A->rmap->n; 18969371c9d4SSatish Balay na = A->cmap->n; 18979371c9d4SSatish Balay mb = a->B->rmap->n; 18989371c9d4SSatish Balay nb = a->B->cmap->n; 18999371c9d4SSatish Balay ai = Aloc->i; 19009371c9d4SSatish Balay aj = Aloc->j; 19019371c9d4SSatish Balay bi = Bloc->i; 19029371c9d4SSatish Balay bj = Bloc->j; 1903fc73b1b3SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 190480bcc5a1SJed Brown PetscInt *d_nnz, *g_nnz, *o_nnz; 190580bcc5a1SJed Brown PetscSFNode *oloc; 1906713c93b4SJed Brown PETSC_UNUSED PetscSF sf; 190780bcc5a1SJed Brown 19089566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(na, &d_nnz, na, &o_nnz, nb, &g_nnz, nb, &oloc)); 190980bcc5a1SJed Brown /* compute d_nnz for preallocation */ 19109566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(d_nnz, na)); 1911cbc6b225SStefano Zampini for (i = 0; i < ai[ma]; i++) d_nnz[aj[i]]++; 191280bcc5a1SJed Brown /* compute local off-diagonal contributions */ 19139566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(g_nnz, nb)); 191480bcc5a1SJed Brown for (i = 0; i < bi[ma]; i++) g_nnz[bj[i]]++; 191580bcc5a1SJed Brown /* map those to global */ 19169566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 19179566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphLayout(sf, A->cmap, nb, NULL, PETSC_USE_POINTER, a->garray)); 19189566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 19199566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(o_nnz, na)); 192057168dbeSPierre Jolivet PetscCall(PetscSFReduceBegin(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 192157168dbeSPierre Jolivet PetscCall(PetscSFReduceEnd(sf, MPIU_INT, g_nnz, o_nnz, MPI_SUM)); 19229566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 1923d4bb536fSBarry Smith 19249566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 19259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 192658b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(B, A->cmap->bs, A->rmap->bs)); 19279566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 19289566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 19299566063dSJacob Faibussowitsch PetscCall(PetscFree4(d_nnz, o_nnz, g_nnz, oloc)); 1930fc4dec0aSBarry Smith } else { 1931fc4dec0aSBarry Smith B = *matout; 19329566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_TRUE)); 1933fc4dec0aSBarry Smith } 1934b7c46309SBarry Smith 1935f79cb1a0Sandi selinger b = (Mat_MPIAIJ *)B->data; 1936a8661f62Sandi selinger A_diag = a->A; 1937a8661f62Sandi selinger B_diag = &b->A; 1938a8661f62Sandi selinger sub_B_diag = (Mat_SeqAIJ *)(*B_diag)->data; 1939a8661f62Sandi selinger A_diag_ncol = A_diag->cmap->N; 1940a8661f62Sandi selinger B_diag_ilen = sub_B_diag->ilen; 1941a8661f62Sandi selinger B_diag_i = sub_B_diag->i; 1942f79cb1a0Sandi selinger 1943f79cb1a0Sandi selinger /* Set ilen for diagonal of B */ 1944ad540459SPierre Jolivet for (i = 0; i < A_diag_ncol; i++) B_diag_ilen[i] = B_diag_i[i + 1] - B_diag_i[i]; 1945f79cb1a0Sandi selinger 19464cf0e950SBarry Smith /* Transpose the diagonal part of the matrix. In contrast to the off-diagonal part, this can be done 1947a8661f62Sandi selinger very quickly (=without using MatSetValues), because all writes are local. */ 19487fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(A_diag, *B_diag)); 19499566063dSJacob Faibussowitsch PetscCall(MatTranspose(A_diag, MAT_REUSE_MATRIX, B_diag)); 1950f79cb1a0Sandi selinger 1951b7c46309SBarry Smith /* copy over the B part */ 19529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[mb], &cols)); 19539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &bv)); 1954ce496241SStefano Zampini pbv = bv; 1955d0f46423SBarry Smith row = A->rmap->rstart; 19562205254eSKarl Rupp for (i = 0; i < bi[mb]; i++) cols[i] = a->garray[bj[i]]; 195761a2fbbaSHong Zhang cols_tmp = cols; 1958da668accSHong Zhang for (i = 0; i < mb; i++) { 1959da668accSHong Zhang ncol = bi[i + 1] - bi[i]; 19609566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, ncol, cols_tmp, 1, &row, pbv, INSERT_VALUES)); 19612205254eSKarl Rupp row++; 1962720a2405SPierre Jolivet if (pbv) pbv += ncol; 1963720a2405SPierre Jolivet if (cols_tmp) cols_tmp += ncol; 1964b7c46309SBarry Smith } 19659566063dSJacob Faibussowitsch PetscCall(PetscFree(cols)); 19669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &bv)); 1967fc73b1b3SBarry Smith 19689566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 19699566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1970cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 19710de55854SLois Curfman McInnes *matout = B; 19720de55854SLois Curfman McInnes } else { 19739566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 19740de55854SLois Curfman McInnes } 19753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1976b7c46309SBarry Smith } 1977b7c46309SBarry Smith 1978ba38deedSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIAIJ(Mat mat, Vec ll, Vec rr) 1979d71ae5a4SJacob Faibussowitsch { 19804b967eb1SSatish Balay Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 19814b967eb1SSatish Balay Mat a = aij->A, b = aij->B; 1982b1d57f15SBarry Smith PetscInt s1, s2, s3; 1983a008b906SSatish Balay 19843a40ed3dSBarry Smith PetscFunctionBegin; 19859566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 19864b967eb1SSatish Balay if (rr) { 19879566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 198808401ef6SPierre Jolivet PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 19894b967eb1SSatish Balay /* Overlap communication with computation. */ 19909566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1991a008b906SSatish Balay } 19924b967eb1SSatish Balay if (ll) { 19939566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 199408401ef6SPierre Jolivet PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1995dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 19964b967eb1SSatish Balay } 19974b967eb1SSatish Balay /* scale the diagonal block */ 1998dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 19994b967eb1SSatish Balay 20004b967eb1SSatish Balay if (rr) { 20014b967eb1SSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 20029566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(aij->Mvctx, rr, aij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2003dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, aij->lvec); 20044b967eb1SSatish Balay } 20053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2006a008b906SSatish Balay } 2007a008b906SSatish Balay 2008ba38deedSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIAIJ(Mat A) 2009d71ae5a4SJacob Faibussowitsch { 2010bb5a7306SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 20113a40ed3dSBarry Smith 20123a40ed3dSBarry Smith PetscFunctionBegin; 20139566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 20143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2015bb5a7306SBarry Smith } 2016bb5a7306SBarry Smith 2017ba38deedSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIAIJ(Mat A, Mat B, PetscBool *flag) 2018d71ae5a4SJacob Faibussowitsch { 2019d4bb536fSBarry Smith Mat_MPIAIJ *matB = (Mat_MPIAIJ *)B->data, *matA = (Mat_MPIAIJ *)A->data; 2020d4bb536fSBarry Smith Mat a, b, c, d; 2021ace3abfcSBarry Smith PetscBool flg; 2022d4bb536fSBarry Smith 20233a40ed3dSBarry Smith PetscFunctionBegin; 20249371c9d4SSatish Balay a = matA->A; 20259371c9d4SSatish Balay b = matA->B; 20269371c9d4SSatish Balay c = matB->A; 20279371c9d4SSatish Balay d = matB->B; 2028d4bb536fSBarry Smith 20299566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 203048a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 20315440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2033d4bb536fSBarry Smith } 2034d4bb536fSBarry Smith 2035ba38deedSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIAIJ(Mat A, Mat B, MatStructure str) 2036d71ae5a4SJacob Faibussowitsch { 2037cb5b572fSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2038cb5b572fSBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 2039cb5b572fSBarry Smith 2040cb5b572fSBarry Smith PetscFunctionBegin; 204133f4a19fSKris Buschelman /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 204233f4a19fSKris Buschelman if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 2043cb5b572fSBarry Smith /* because of the column compression in the off-processor part of the matrix a->B, 2044cb5b572fSBarry Smith the number of columns in a->B and b->B may be different, hence we cannot call 2045cb5b572fSBarry Smith the MatCopy() directly on the two parts. If need be, we can provide a more 2046cb5b572fSBarry Smith efficient copy than the MatCopy_Basic() by first uncompressing the a->B matrices 2047cb5b572fSBarry Smith then copying the submatrices */ 20489566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 2049cb5b572fSBarry Smith } else { 20509566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 20519566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 2052cb5b572fSBarry Smith } 20539566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 20543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2055cb5b572fSBarry Smith } 2056cb5b572fSBarry Smith 2057001ddc4fSHong Zhang /* 2058001ddc4fSHong Zhang Computes the number of nonzeros per row needed for preallocation when X and Y 2059001ddc4fSHong Zhang have different nonzero structure. 2060001ddc4fSHong Zhang */ 2061d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIX_private(PetscInt m, const PetscInt *xi, const PetscInt *xj, const PetscInt *xltog, const PetscInt *yi, const PetscInt *yj, const PetscInt *yltog, PetscInt *nnz) 2062d71ae5a4SJacob Faibussowitsch { 2063001ddc4fSHong Zhang PetscInt i, j, k, nzx, nzy; 206495b7e79eSJed Brown 206595b7e79eSJed Brown PetscFunctionBegin; 206695b7e79eSJed Brown /* Set the number of nonzeros in the new matrix */ 206795b7e79eSJed Brown for (i = 0; i < m; i++) { 20688e3a54c0SPierre Jolivet const PetscInt *xjj = PetscSafePointerPlusOffset(xj, xi[i]), *yjj = PetscSafePointerPlusOffset(yj, yi[i]); 2069001ddc4fSHong Zhang nzx = xi[i + 1] - xi[i]; 2070001ddc4fSHong Zhang nzy = yi[i + 1] - yi[i]; 207195b7e79eSJed Brown nnz[i] = 0; 207295b7e79eSJed Brown for (j = 0, k = 0; j < nzx; j++) { /* Point in X */ 2073001ddc4fSHong Zhang for (; k < nzy && yltog[yjj[k]] < xltog[xjj[j]]; k++) nnz[i]++; /* Catch up to X */ 2074001ddc4fSHong Zhang if (k < nzy && yltog[yjj[k]] == xltog[xjj[j]]) k++; /* Skip duplicate */ 207595b7e79eSJed Brown nnz[i]++; 207695b7e79eSJed Brown } 207795b7e79eSJed Brown for (; k < nzy; k++) nnz[i]++; 207895b7e79eSJed Brown } 20793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208095b7e79eSJed Brown } 208195b7e79eSJed Brown 2082001ddc4fSHong Zhang /* This is the same as MatAXPYGetPreallocation_SeqAIJ, except that the local-to-global map is provided */ 2083d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPYGetPreallocation_MPIAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 2084d71ae5a4SJacob Faibussowitsch { 2085001ddc4fSHong Zhang PetscInt m = Y->rmap->N; 2086001ddc4fSHong Zhang Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data; 2087001ddc4fSHong Zhang Mat_SeqAIJ *y = (Mat_SeqAIJ *)Y->data; 2088001ddc4fSHong Zhang 2089001ddc4fSHong Zhang PetscFunctionBegin; 20909566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 20913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2092001ddc4fSHong Zhang } 2093001ddc4fSHong Zhang 2094ba38deedSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 2095d71ae5a4SJacob Faibussowitsch { 2096ac90fabeSBarry Smith Mat_MPIAIJ *xx = (Mat_MPIAIJ *)X->data, *yy = (Mat_MPIAIJ *)Y->data; 2097ac90fabeSBarry Smith 2098ac90fabeSBarry Smith PetscFunctionBegin; 2099ac90fabeSBarry Smith if (str == SAME_NONZERO_PATTERN) { 21009566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->A, a, xx->A, str)); 21019566063dSJacob Faibussowitsch PetscCall(MatAXPY(yy->B, a, xx->B, str)); 2102ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 21039566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 2104ac90fabeSBarry Smith } else { 21059f5f6813SShri Abhyankar Mat B; 21069f5f6813SShri Abhyankar PetscInt *nnz_d, *nnz_o; 2107d9d719b4SStefano Zampini 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 21099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 21109566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 21119566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 21129566063dSJacob Faibussowitsch PetscCall(MatSetLayouts(B, Y->rmap, Y->cmap)); 21139566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)Y)->type_name)); 21149566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqAIJ(yy->A, xx->A, nnz_d)); 21159566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 21169566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, nnz_d, 0, nnz_o)); 21179566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 21189566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 21199566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 21209566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 2121ac90fabeSBarry Smith } 21223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2123ac90fabeSBarry Smith } 2124ac90fabeSBarry Smith 21252726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqAIJ(Mat); 2126354c94deSBarry Smith 2127ba38deedSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIAIJ(Mat mat) 2128d71ae5a4SJacob Faibussowitsch { 2129354c94deSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 2130354c94deSBarry Smith 213165d0d443SPierre Jolivet PetscFunctionBegin; 21329566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->A)); 21339566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqAIJ(aij->B)); 21343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2135354c94deSBarry Smith } 2136354c94deSBarry Smith 2137ba38deedSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIAIJ(Mat A) 2138d71ae5a4SJacob Faibussowitsch { 213999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 214099cafbc1SBarry Smith 214199cafbc1SBarry Smith PetscFunctionBegin; 21429566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 21439566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 21443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 214599cafbc1SBarry Smith } 214699cafbc1SBarry Smith 2147ba38deedSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIAIJ(Mat A) 2148d71ae5a4SJacob Faibussowitsch { 214999cafbc1SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 215099cafbc1SBarry Smith 215199cafbc1SBarry Smith PetscFunctionBegin; 21529566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 21539566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 21543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 215599cafbc1SBarry Smith } 215699cafbc1SBarry Smith 2157ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2158d71ae5a4SJacob Faibussowitsch { 2159c91732d9SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2160475b8b61SHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n; 216162e5df07SMark Adams PetscScalar *vv; 2162475b8b61SHong Zhang Vec vB, vA; 216362e5df07SMark Adams const PetscScalar *va, *vb; 2164c91732d9SHong Zhang 2165c91732d9SHong Zhang PetscFunctionBegin; 2166c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 21679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 2168475b8b61SHong Zhang 216962e5df07SMark Adams PetscCall(VecGetArrayRead(vA, &va)); 2170c91732d9SHong Zhang if (idx) { 2171475b8b61SHong Zhang for (i = 0; i < m; i++) { 2172d0f46423SBarry Smith if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2173c91732d9SHong Zhang } 2174c91732d9SHong Zhang } 2175c91732d9SHong Zhang 2176c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 21779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 21789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 2179c91732d9SHong Zhang 21809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 21819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 2182475b8b61SHong Zhang for (i = 0; i < m; i++) { 2183c91732d9SHong Zhang if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 2184475b8b61SHong Zhang vv[i] = vb[i]; 2185c91732d9SHong Zhang if (idx) idx[i] = a->garray[idxb[i]]; 2186475b8b61SHong Zhang } else { 2187475b8b61SHong Zhang vv[i] = va[i]; 21889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > a->garray[idxb[i]]) idx[i] = a->garray[idxb[i]]; 2189c91732d9SHong Zhang } 2190c91732d9SHong Zhang } 219162e5df07SMark Adams PetscCall(VecRestoreArrayWrite(v, &vv)); 219262e5df07SMark Adams PetscCall(VecRestoreArrayRead(vA, &va)); 21939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 21949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 21959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 21969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 21973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2198c91732d9SHong Zhang } 2199c91732d9SHong Zhang 2200eede4a3fSMark Adams static PetscErrorCode MatGetRowSumAbs_MPIAIJ(Mat A, Vec v) 2201eede4a3fSMark Adams { 2202eede4a3fSMark Adams Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2203eede4a3fSMark Adams Vec vB, vA; 2204eede4a3fSMark Adams 2205eede4a3fSMark Adams PetscFunctionBegin; 2206c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 2207eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->A, vA)); 2208c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 2209eede4a3fSMark Adams PetscCall(MatGetRowSumAbs(a->B, vB)); 2210eede4a3fSMark Adams PetscCall(VecAXPY(vA, 1.0, vB)); 2211eede4a3fSMark Adams PetscCall(VecDestroy(&vB)); 2212eede4a3fSMark Adams PetscCall(VecCopy(vA, v)); 2213eede4a3fSMark Adams PetscCall(VecDestroy(&vA)); 2214eede4a3fSMark Adams PetscFunctionReturn(PETSC_SUCCESS); 2215eede4a3fSMark Adams } 2216eede4a3fSMark Adams 2217ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMinAbs_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2218d71ae5a4SJacob Faibussowitsch { 2219f07e67edSHong Zhang Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2220f07e67edSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2221f07e67edSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2222f07e67edSHong Zhang PetscInt *cmap = mat->garray; 2223f07e67edSHong Zhang PetscInt *diagIdx, *offdiagIdx; 2224f07e67edSHong Zhang Vec diagV, offdiagV; 2225ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2226ce496241SStefano Zampini const PetscScalar *ba, *bav; 2227f07e67edSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2228f07e67edSHong Zhang Mat B = mat->B; 2229f07e67edSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2230c87e5d42SMatthew Knepley 2231c87e5d42SMatthew Knepley PetscFunctionBegin; 2232f07e67edSHong Zhang /* When a process holds entire A and other processes have no entry */ 2233f07e67edSHong Zhang if (A->cmap->N == n) { 22349566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 22359566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 22369566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, idx)); 22379566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 22389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 22393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2240f07e67edSHong Zhang } else if (n == 0) { 2241f07e67edSHong Zhang if (m) { 22429566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 22439371c9d4SSatish Balay for (r = 0; r < m; r++) { 22449371c9d4SSatish Balay a[r] = 0.0; 22459371c9d4SSatish Balay if (idx) idx[r] = -1; 22469371c9d4SSatish Balay } 22479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2248f07e67edSHong Zhang } 22493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2250f07e67edSHong Zhang } 2251f07e67edSHong Zhang 22529566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 22539566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 22549566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 22559566063dSJacob Faibussowitsch PetscCall(MatGetRowMinAbs(mat->A, diagV, diagIdx)); 2256f07e67edSHong Zhang 2257f07e67edSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 22589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2259ce496241SStefano Zampini ba = bav; 2260f07e67edSHong Zhang bi = b->i; 2261f07e67edSHong Zhang bj = b->j; 22629566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2263f07e67edSHong Zhang for (r = 0; r < m; r++) { 2264f07e67edSHong Zhang ncols = bi[r + 1] - bi[r]; 2265f07e67edSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 22669371c9d4SSatish Balay offdiagA[r] = *ba; 22679371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2268f07e67edSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2269f07e67edSHong Zhang offdiagA[r] = 0.0; 2270f07e67edSHong Zhang 2271f07e67edSHong Zhang /* Find first hole in the cmap */ 2272f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 2273f07e67edSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2274f07e67edSHong Zhang if (col > j && j < cstart) { 2275f07e67edSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2276f07e67edSHong Zhang break; 2277f07e67edSHong Zhang } else if (col > j + n && j >= cstart) { 2278f07e67edSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2279f07e67edSHong Zhang break; 2280f07e67edSHong Zhang } 2281f07e67edSHong Zhang } 22824e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2283f07e67edSHong Zhang /* a hole is outside compressed Bcols */ 2284f07e67edSHong Zhang if (ncols == 0) { 2285f07e67edSHong Zhang if (cstart) { 2286f07e67edSHong Zhang offdiagIdx[r] = 0; 2287f07e67edSHong Zhang } else offdiagIdx[r] = cend; 2288f07e67edSHong Zhang } else { /* ncols > 0 */ 2289f07e67edSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2290f07e67edSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2291f07e67edSHong Zhang } 2292f07e67edSHong Zhang } 2293f07e67edSHong Zhang } 2294f07e67edSHong Zhang 2295f07e67edSHong Zhang for (j = 0; j < ncols; j++) { 22969371c9d4SSatish Balay if (PetscAbsScalar(offdiagA[r]) > PetscAbsScalar(*ba)) { 22979371c9d4SSatish Balay offdiagA[r] = *ba; 22989371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 22999371c9d4SSatish Balay } 23009371c9d4SSatish Balay ba++; 23019371c9d4SSatish Balay bj++; 2302f07e67edSHong Zhang } 2303f07e67edSHong Zhang } 2304f07e67edSHong Zhang 23059566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23069566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2307f07e67edSHong Zhang for (r = 0; r < m; ++r) { 2308f07e67edSHong Zhang if (PetscAbsScalar(diagA[r]) < PetscAbsScalar(offdiagA[r])) { 2309f07e67edSHong Zhang a[r] = diagA[r]; 2310f07e67edSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2311f07e67edSHong Zhang } else if (PetscAbsScalar(diagA[r]) == PetscAbsScalar(offdiagA[r])) { 2312f07e67edSHong Zhang a[r] = diagA[r]; 2313c87e5d42SMatthew Knepley if (idx) { 2314f07e67edSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2315f07e67edSHong Zhang idx[r] = cstart + diagIdx[r]; 2316f07e67edSHong Zhang } else idx[r] = offdiagIdx[r]; 2317f07e67edSHong Zhang } 2318f07e67edSHong Zhang } else { 2319f07e67edSHong Zhang a[r] = offdiagA[r]; 2320f07e67edSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2321c87e5d42SMatthew Knepley } 2322c87e5d42SMatthew Knepley } 23239566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 23249566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 23259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 23269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 23279566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23289566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 23299566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 23303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2331c87e5d42SMatthew Knepley } 2332c87e5d42SMatthew Knepley 2333ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMin_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2334d71ae5a4SJacob Faibussowitsch { 233503bc72f1SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 2336fa213d2fSHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 2337fa213d2fSHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 233803bc72f1SMatthew Knepley PetscInt *cmap = mat->garray; 233903bc72f1SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 234003bc72f1SMatthew Knepley Vec diagV, offdiagV; 2341ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2342ce496241SStefano Zampini const PetscScalar *ba, *bav; 2343fa213d2fSHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 2344fa213d2fSHong Zhang Mat B = mat->B; 2345fa213d2fSHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 234603bc72f1SMatthew Knepley 234703bc72f1SMatthew Knepley PetscFunctionBegin; 2348fa213d2fSHong Zhang /* When a process holds entire A and other processes have no entry */ 2349fa213d2fSHong Zhang if (A->cmap->N == n) { 23509566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 23519566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 23529566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, idx)); 23539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 23549566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 23553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2356fa213d2fSHong Zhang } else if (n == 0) { 2357fa213d2fSHong Zhang if (m) { 23589566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 23599371c9d4SSatish Balay for (r = 0; r < m; r++) { 23609371c9d4SSatish Balay a[r] = PETSC_MAX_REAL; 23619371c9d4SSatish Balay if (idx) idx[r] = -1; 23629371c9d4SSatish Balay } 23639566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 2364fa213d2fSHong Zhang } 23653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2366fa213d2fSHong Zhang } 2367fa213d2fSHong Zhang 23689566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &diagIdx, m, &offdiagIdx)); 23699566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 23709566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 23719566063dSJacob Faibussowitsch PetscCall(MatGetRowMin(mat->A, diagV, diagIdx)); 2372fa213d2fSHong Zhang 2373fa213d2fSHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 23749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2375ce496241SStefano Zampini ba = bav; 2376fa213d2fSHong Zhang bi = b->i; 2377fa213d2fSHong Zhang bj = b->j; 23789566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 2379fa213d2fSHong Zhang for (r = 0; r < m; r++) { 2380fa213d2fSHong Zhang ncols = bi[r + 1] - bi[r]; 2381fa213d2fSHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 23829371c9d4SSatish Balay offdiagA[r] = *ba; 23839371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 2384fa213d2fSHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 2385fa213d2fSHong Zhang offdiagA[r] = 0.0; 2386fa213d2fSHong Zhang 2387fa213d2fSHong Zhang /* Find first hole in the cmap */ 2388fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 2389fa213d2fSHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 2390fa213d2fSHong Zhang if (col > j && j < cstart) { 2391fa213d2fSHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 2392fa213d2fSHong Zhang break; 2393fa213d2fSHong Zhang } else if (col > j + n && j >= cstart) { 2394fa213d2fSHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 2395fa213d2fSHong Zhang break; 2396fa213d2fSHong Zhang } 2397fa213d2fSHong Zhang } 23984e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 2399fa213d2fSHong Zhang /* a hole is outside compressed Bcols */ 2400fa213d2fSHong Zhang if (ncols == 0) { 2401fa213d2fSHong Zhang if (cstart) { 2402fa213d2fSHong Zhang offdiagIdx[r] = 0; 2403fa213d2fSHong Zhang } else offdiagIdx[r] = cend; 2404fa213d2fSHong Zhang } else { /* ncols > 0 */ 2405fa213d2fSHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 2406fa213d2fSHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 2407fa213d2fSHong Zhang } 2408fa213d2fSHong Zhang } 2409fa213d2fSHong Zhang } 2410fa213d2fSHong Zhang 2411fa213d2fSHong Zhang for (j = 0; j < ncols; j++) { 24129371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) > PetscRealPart(*ba)) { 24139371c9d4SSatish Balay offdiagA[r] = *ba; 24149371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 24159371c9d4SSatish Balay } 24169371c9d4SSatish Balay ba++; 24179371c9d4SSatish Balay bj++; 2418fa213d2fSHong Zhang } 2419fa213d2fSHong Zhang } 2420fa213d2fSHong Zhang 24219566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24229566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 2423fa213d2fSHong Zhang for (r = 0; r < m; ++r) { 2424fa213d2fSHong Zhang if (PetscRealPart(diagA[r]) < PetscRealPart(offdiagA[r])) { 242503bc72f1SMatthew Knepley a[r] = diagA[r]; 2426fa213d2fSHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 2427fa213d2fSHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 2428fa213d2fSHong Zhang a[r] = diagA[r]; 2429fa213d2fSHong Zhang if (idx) { 2430fa213d2fSHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 243103bc72f1SMatthew Knepley idx[r] = cstart + diagIdx[r]; 2432fa213d2fSHong Zhang } else idx[r] = offdiagIdx[r]; 2433fa213d2fSHong Zhang } 243403bc72f1SMatthew Knepley } else { 243503bc72f1SMatthew Knepley a[r] = offdiagA[r]; 2436fa213d2fSHong Zhang if (idx) idx[r] = offdiagIdx[r]; 243703bc72f1SMatthew Knepley } 243803bc72f1SMatthew Knepley } 24399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 24409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 24429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 24439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 24459566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 24463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 244703bc72f1SMatthew Knepley } 244803bc72f1SMatthew Knepley 2449ba38deedSJacob Faibussowitsch static PetscErrorCode MatGetRowMax_MPIAIJ(Mat A, Vec v, PetscInt idx[]) 2450d71ae5a4SJacob Faibussowitsch { 2451c87e5d42SMatthew Knepley Mat_MPIAIJ *mat = (Mat_MPIAIJ *)A->data; 24521a254869SHong Zhang PetscInt m = A->rmap->n, n = A->cmap->n; 24531a254869SHong Zhang PetscInt cstart = A->cmap->rstart, cend = A->cmap->rend; 2454c87e5d42SMatthew Knepley PetscInt *cmap = mat->garray; 2455c87e5d42SMatthew Knepley PetscInt *diagIdx, *offdiagIdx; 2456c87e5d42SMatthew Knepley Vec diagV, offdiagV; 2457ce496241SStefano Zampini PetscScalar *a, *diagA, *offdiagA; 2458ce496241SStefano Zampini const PetscScalar *ba, *bav; 24591a254869SHong Zhang PetscInt r, j, col, ncols, *bi, *bj; 24601a254869SHong Zhang Mat B = mat->B; 24611a254869SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 2462c87e5d42SMatthew Knepley 2463c87e5d42SMatthew Knepley PetscFunctionBegin; 24641a254869SHong Zhang /* When a process holds entire A and other processes have no entry */ 24651a254869SHong Zhang if (A->cmap->N == n) { 24669566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &diagA)); 24679566063dSJacob Faibussowitsch PetscCall(VecCreateSeqWithArray(PETSC_COMM_SELF, 1, m, diagA, &diagV)); 24689566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, idx)); 24699566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 24709566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &diagA)); 24713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24721a254869SHong Zhang } else if (n == 0) { 24731a254869SHong Zhang if (m) { 24749566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 24759371c9d4SSatish Balay for (r = 0; r < m; r++) { 24769371c9d4SSatish Balay a[r] = PETSC_MIN_REAL; 24779371c9d4SSatish Balay if (idx) idx[r] = -1; 24789371c9d4SSatish Balay } 24799566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 24801a254869SHong Zhang } 24813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24821a254869SHong Zhang } 24831a254869SHong Zhang 24849566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &diagIdx, m, &offdiagIdx)); 24859566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &diagV)); 24869566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &offdiagV)); 24879566063dSJacob Faibussowitsch PetscCall(MatGetRowMax(mat->A, diagV, diagIdx)); 24881a254869SHong Zhang 24891a254869SHong Zhang /* Get offdiagIdx[] for implicit 0.0 */ 24909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &bav)); 2491ce496241SStefano Zampini ba = bav; 24921a254869SHong Zhang bi = b->i; 24931a254869SHong Zhang bj = b->j; 24949566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(offdiagV, &offdiagA)); 24951a254869SHong Zhang for (r = 0; r < m; r++) { 24961a254869SHong Zhang ncols = bi[r + 1] - bi[r]; 24971a254869SHong Zhang if (ncols == A->cmap->N - n) { /* Brow is dense */ 24989371c9d4SSatish Balay offdiagA[r] = *ba; 24999371c9d4SSatish Balay offdiagIdx[r] = cmap[0]; 25001a254869SHong Zhang } else { /* Brow is sparse so already KNOW maximum is 0.0 or higher */ 25011a254869SHong Zhang offdiagA[r] = 0.0; 25021a254869SHong Zhang 25031a254869SHong Zhang /* Find first hole in the cmap */ 25041a254869SHong Zhang for (j = 0; j < ncols; j++) { 25051a254869SHong Zhang col = cmap[bj[j]]; /* global column number = cmap[B column number] */ 25061a254869SHong Zhang if (col > j && j < cstart) { 25071a254869SHong Zhang offdiagIdx[r] = j; /* global column number of first implicit 0.0 */ 25081a254869SHong Zhang break; 25091a254869SHong Zhang } else if (col > j + n && j >= cstart) { 25101a254869SHong Zhang offdiagIdx[r] = j + n; /* global column number of first implicit 0.0 */ 25111a254869SHong Zhang break; 25121a254869SHong Zhang } 25131a254869SHong Zhang } 25144e879edeSHong Zhang if (j == ncols && ncols < A->cmap->N - n) { 25151a254869SHong Zhang /* a hole is outside compressed Bcols */ 25161a254869SHong Zhang if (ncols == 0) { 25171a254869SHong Zhang if (cstart) { 25181a254869SHong Zhang offdiagIdx[r] = 0; 25191a254869SHong Zhang } else offdiagIdx[r] = cend; 25201a254869SHong Zhang } else { /* ncols > 0 */ 25211a254869SHong Zhang offdiagIdx[r] = cmap[ncols - 1] + 1; 25221a254869SHong Zhang if (offdiagIdx[r] == cstart) offdiagIdx[r] += n; 25231a254869SHong Zhang } 25241a254869SHong Zhang } 25251a254869SHong Zhang } 25261a254869SHong Zhang 25271a254869SHong Zhang for (j = 0; j < ncols; j++) { 25289371c9d4SSatish Balay if (PetscRealPart(offdiagA[r]) < PetscRealPart(*ba)) { 25299371c9d4SSatish Balay offdiagA[r] = *ba; 25309371c9d4SSatish Balay offdiagIdx[r] = cmap[*bj]; 25319371c9d4SSatish Balay } 25329371c9d4SSatish Balay ba++; 25339371c9d4SSatish Balay bj++; 25341a254869SHong Zhang } 25351a254869SHong Zhang } 25361a254869SHong Zhang 25379566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &a)); 25389566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(diagV, (const PetscScalar **)&diagA)); 25391a254869SHong Zhang for (r = 0; r < m; ++r) { 25401a254869SHong Zhang if (PetscRealPart(diagA[r]) > PetscRealPart(offdiagA[r])) { 2541c87e5d42SMatthew Knepley a[r] = diagA[r]; 25421a254869SHong Zhang if (idx) idx[r] = cstart + diagIdx[r]; 25431a254869SHong Zhang } else if (PetscRealPart(diagA[r]) == PetscRealPart(offdiagA[r])) { 25441a254869SHong Zhang a[r] = diagA[r]; 25451a254869SHong Zhang if (idx) { 25461a254869SHong Zhang if (cstart + diagIdx[r] <= offdiagIdx[r]) { 2547c87e5d42SMatthew Knepley idx[r] = cstart + diagIdx[r]; 25481a254869SHong Zhang } else idx[r] = offdiagIdx[r]; 25491a254869SHong Zhang } 2550c87e5d42SMatthew Knepley } else { 2551c87e5d42SMatthew Knepley a[r] = offdiagA[r]; 25521a254869SHong Zhang if (idx) idx[r] = offdiagIdx[r]; 2553c87e5d42SMatthew Knepley } 2554c87e5d42SMatthew Knepley } 25559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &bav)); 25569566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(v, &a)); 25579566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(diagV, (const PetscScalar **)&diagA)); 25589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(offdiagV, &offdiagA)); 25599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&diagV)); 25609566063dSJacob Faibussowitsch PetscCall(VecDestroy(&offdiagV)); 25619566063dSJacob Faibussowitsch PetscCall(PetscFree2(diagIdx, offdiagIdx)); 25623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2563c87e5d42SMatthew Knepley } 2564c87e5d42SMatthew Knepley 2565d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIAIJ(Mat mat, Mat *newmat) 2566d71ae5a4SJacob Faibussowitsch { 2567f6d58c54SBarry Smith Mat *dummy; 25685494a064SHong Zhang 25695494a064SHong Zhang PetscFunctionBegin; 25709566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_All(mat, MAT_DO_NOT_GET_VALUES, MAT_INITIAL_MATRIX, &dummy)); 2571f6d58c54SBarry Smith *newmat = *dummy; 25729566063dSJacob Faibussowitsch PetscCall(PetscFree(dummy)); 25733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25745494a064SHong Zhang } 25755494a064SHong Zhang 2576ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIAIJ(Mat A, const PetscScalar **values) 2577d71ae5a4SJacob Faibussowitsch { 2578bbead8a2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2579bbead8a2SBarry Smith 2580bbead8a2SBarry Smith PetscFunctionBegin; 25819566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 25827b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2584bbead8a2SBarry Smith } 2585bbead8a2SBarry Smith 2586d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIAIJ(Mat x, PetscRandom rctx) 2587d71ae5a4SJacob Faibussowitsch { 258873a71a0fSBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)x->data; 258973a71a0fSBarry Smith 259073a71a0fSBarry Smith PetscFunctionBegin; 259108401ef6SPierre Jolivet PetscCheck(x->assembled || x->preallocated, PetscObjectComm((PetscObject)x), PETSC_ERR_ARG_WRONGSTATE, "MatSetRandom on an unassembled and unpreallocated MATMPIAIJ is not allowed"); 25929566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->A, rctx)); 2593679944adSJunchao Zhang if (x->assembled) { 25949566063dSJacob Faibussowitsch PetscCall(MatSetRandom(aij->B, rctx)); 2595679944adSJunchao Zhang } else { 25969566063dSJacob Faibussowitsch PetscCall(MatSetRandomSkipColumnRange_SeqAIJ_Private(aij->B, x->cmap->rstart, x->cmap->rend, rctx)); 2597679944adSJunchao Zhang } 25989566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(x, MAT_FINAL_ASSEMBLY)); 25999566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(x, MAT_FINAL_ASSEMBLY)); 26003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260173a71a0fSBarry Smith } 2602bbead8a2SBarry Smith 2603ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ(Mat A, PetscBool sc) 2604d71ae5a4SJacob Faibussowitsch { 2605b1b1104fSBarry Smith PetscFunctionBegin; 2606b1b1104fSBarry Smith if (sc) A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ_Scalable; 2607b1b1104fSBarry Smith else A->ops->increaseoverlap = MatIncreaseOverlap_MPIAIJ; 26083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2609b1b1104fSBarry Smith } 2610b1b1104fSBarry Smith 2611b1b1104fSBarry Smith /*@ 2612f2afee66SBarry Smith MatMPIAIJGetNumberNonzeros - gets the number of nonzeros in the matrix on this MPI rank 2613f2afee66SBarry Smith 26142ef1f0ffSBarry Smith Not Collective 2615f2afee66SBarry Smith 2616f2afee66SBarry Smith Input Parameter: 2617f2afee66SBarry Smith . A - the matrix 2618f2afee66SBarry Smith 2619f2afee66SBarry Smith Output Parameter: 2620f2afee66SBarry Smith . nz - the number of nonzeros 2621f2afee66SBarry Smith 2622f2afee66SBarry Smith Level: advanced 2623f2afee66SBarry Smith 2624fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2625f2afee66SBarry Smith @*/ 2626d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetNumberNonzeros(Mat A, PetscCount *nz) 2627d71ae5a4SJacob Faibussowitsch { 2628f2afee66SBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)A->data; 2629f2afee66SBarry Smith Mat_SeqAIJ *aaij = (Mat_SeqAIJ *)maij->A->data, *baij = (Mat_SeqAIJ *)maij->B->data; 2630dfebb78cSStefano Zampini PetscBool isaij; 2631f2afee66SBarry Smith 2632f2afee66SBarry Smith PetscFunctionBegin; 2633dfebb78cSStefano Zampini PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIAIJ, &isaij)); 2634dfebb78cSStefano Zampini PetscCheck(isaij, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for type %s", ((PetscObject)A)->type_name); 2635f2afee66SBarry Smith *nz = aaij->i[A->rmap->n] + baij->i[A->rmap->n]; 26363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2637f2afee66SBarry Smith } 2638f2afee66SBarry Smith 2639f2afee66SBarry Smith /*@ 2640b1b1104fSBarry Smith MatMPIAIJSetUseScalableIncreaseOverlap - Determine if the matrix uses a scalable algorithm to compute the overlap 2641b1b1104fSBarry Smith 2642c3339decSBarry Smith Collective 2643b1b1104fSBarry Smith 2644b1b1104fSBarry Smith Input Parameters: 2645b1b1104fSBarry Smith + A - the matrix 264611a5261eSBarry Smith - sc - `PETSC_TRUE` indicates use the scalable algorithm (default is not to use the scalable algorithm) 2647b1b1104fSBarry Smith 264896a0c994SBarry Smith Level: advanced 264996a0c994SBarry Smith 2650fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ` 2651b1b1104fSBarry Smith @*/ 2652d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetUseScalableIncreaseOverlap(Mat A, PetscBool sc) 2653d71ae5a4SJacob Faibussowitsch { 2654b1b1104fSBarry Smith PetscFunctionBegin; 2655cac4c232SBarry Smith PetscTryMethod(A, "MatMPIAIJSetUseScalableIncreaseOverlap_C", (Mat, PetscBool), (A, sc)); 26563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2657b1b1104fSBarry Smith } 2658b1b1104fSBarry Smith 2659ce78bad3SBarry Smith PetscErrorCode MatSetFromOptions_MPIAIJ(Mat A, PetscOptionItems PetscOptionsObject) 2660d71ae5a4SJacob Faibussowitsch { 2661b1b1104fSBarry Smith PetscBool sc = PETSC_FALSE, flg; 2662b1b1104fSBarry Smith 2663b1b1104fSBarry Smith PetscFunctionBegin; 2664d0609cedSBarry Smith PetscOptionsHeadBegin(PetscOptionsObject, "MPIAIJ options"); 2665b1b1104fSBarry Smith if (A->ops->increaseoverlap == MatIncreaseOverlap_MPIAIJ_Scalable) sc = PETSC_TRUE; 26669566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_increase_overlap_scalable", "Use a scalable algorithm to compute the overlap", "MatIncreaseOverlap", sc, &sc, &flg)); 26671baa6e33SBarry Smith if (flg) PetscCall(MatMPIAIJSetUseScalableIncreaseOverlap(A, sc)); 2668d0609cedSBarry Smith PetscOptionsHeadEnd(); 26693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2670b1b1104fSBarry Smith } 2671b1b1104fSBarry Smith 2672ba38deedSJacob Faibussowitsch static PetscErrorCode MatShift_MPIAIJ(Mat Y, PetscScalar a) 2673d71ae5a4SJacob Faibussowitsch { 26747d68702bSBarry Smith Mat_MPIAIJ *maij = (Mat_MPIAIJ *)Y->data; 2675c5e4d11fSDmitry Karpeev Mat_SeqAIJ *aij = (Mat_SeqAIJ *)maij->A->data; 26767d68702bSBarry Smith 26777d68702bSBarry Smith PetscFunctionBegin; 2678c5e4d11fSDmitry Karpeev if (!Y->preallocated) { 26799566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(Y, 1, NULL, 0, NULL)); 26805519a089SJose E. Roman } else if (!aij->nz) { /* It does not matter if diagonals of Y only partially lie in maij->A. We just need an estimated preallocation. */ 2681b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26829566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(maij->A, 1, NULL)); 2683b83222d8SBarry Smith aij->nonew = nonew; 26847d68702bSBarry Smith } 26859566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 26863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 26877d68702bSBarry Smith } 26887d68702bSBarry Smith 2689ba38deedSJacob Faibussowitsch static PetscErrorCode MatInvertVariableBlockDiagonal_MPIAIJ(Mat A, PetscInt nblocks, const PetscInt *bsizes, PetscScalar *diag) 2690d71ae5a4SJacob Faibussowitsch { 2691a8ee9fb5SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2692a8ee9fb5SBarry Smith 2693a8ee9fb5SBarry Smith PetscFunctionBegin; 26949566063dSJacob Faibussowitsch PetscCall(MatInvertVariableBlockDiagonal(a->A, nblocks, bsizes, diag)); 26953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2696a8ee9fb5SBarry Smith } 26973b49f96aSBarry Smith 269858c11ad4SPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIAIJ(Mat A, PetscBool keep) 2699dec0b466SHong Zhang { 2700dec0b466SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 2701dec0b466SHong Zhang 2702dec0b466SHong Zhang PetscFunctionBegin; 270358c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 270458c11ad4SPierre Jolivet PetscCall(MatEliminateZeros_SeqAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 27053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2706dec0b466SHong Zhang } 2707dec0b466SHong Zhang 2708cda55fadSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIAIJ, 2709cda55fadSBarry Smith MatGetRow_MPIAIJ, 2710cda55fadSBarry Smith MatRestoreRow_MPIAIJ, 2711cda55fadSBarry Smith MatMult_MPIAIJ, 271297304618SKris Buschelman /* 4*/ MatMultAdd_MPIAIJ, 27137c922b88SBarry Smith MatMultTranspose_MPIAIJ, 27147c922b88SBarry Smith MatMultTransposeAdd_MPIAIJ, 2715f4259b30SLisandro Dalcin NULL, 2716f4259b30SLisandro Dalcin NULL, 2717f4259b30SLisandro Dalcin NULL, 2718f4259b30SLisandro Dalcin /*10*/ NULL, 2719f4259b30SLisandro Dalcin NULL, 2720f4259b30SLisandro Dalcin NULL, 272141f059aeSBarry Smith MatSOR_MPIAIJ, 2722b7c46309SBarry Smith MatTranspose_MPIAIJ, 272397304618SKris Buschelman /*15*/ MatGetInfo_MPIAIJ, 2724cda55fadSBarry Smith MatEqual_MPIAIJ, 2725cda55fadSBarry Smith MatGetDiagonal_MPIAIJ, 2726cda55fadSBarry Smith MatDiagonalScale_MPIAIJ, 2727cda55fadSBarry Smith MatNorm_MPIAIJ, 272897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIAIJ, 2729cda55fadSBarry Smith MatAssemblyEnd_MPIAIJ, 2730cda55fadSBarry Smith MatSetOption_MPIAIJ, 2731cda55fadSBarry Smith MatZeroEntries_MPIAIJ, 2732d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIAIJ, 2733f4259b30SLisandro Dalcin NULL, 2734f4259b30SLisandro Dalcin NULL, 2735f4259b30SLisandro Dalcin NULL, 2736f4259b30SLisandro Dalcin NULL, 273726cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2738f4259b30SLisandro Dalcin NULL, 2739f4259b30SLisandro Dalcin NULL, 2740a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIAIJ, 2741f4259b30SLisandro Dalcin NULL, 2742d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIAIJ, 2743f4259b30SLisandro Dalcin NULL, 2744f4259b30SLisandro Dalcin NULL, 2745f4259b30SLisandro Dalcin NULL, 2746f4259b30SLisandro Dalcin NULL, 2747d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIAIJ, 27487dae84e0SHong Zhang MatCreateSubMatrices_MPIAIJ, 2749cda55fadSBarry Smith MatIncreaseOverlap_MPIAIJ, 2750cda55fadSBarry Smith MatGetValues_MPIAIJ, 2751cb5b572fSBarry Smith MatCopy_MPIAIJ, 2752d519adbfSMatthew Knepley /*44*/ MatGetRowMax_MPIAIJ, 2753cda55fadSBarry Smith MatScale_MPIAIJ, 27547d68702bSBarry Smith MatShift_MPIAIJ, 275599e65526SBarry Smith MatDiagonalSet_MPIAIJ, 2756564f14d6SBarry Smith MatZeroRowsColumns_MPIAIJ, 275773a71a0fSBarry Smith /*49*/ MatSetRandom_MPIAIJ, 27588a9c020eSBarry Smith MatGetRowIJ_MPIAIJ, 27598a9c020eSBarry Smith MatRestoreRowIJ_MPIAIJ, 2760f4259b30SLisandro Dalcin NULL, 2761f4259b30SLisandro Dalcin NULL, 276293dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2763f4259b30SLisandro Dalcin NULL, 2764cda55fadSBarry Smith MatSetUnfactored_MPIAIJ, 276572e6a0cfSJed Brown MatPermute_MPIAIJ, 2766f4259b30SLisandro Dalcin NULL, 27677dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIAIJ, 2768e03a110bSBarry Smith MatDestroy_MPIAIJ, 2769e03a110bSBarry Smith MatView_MPIAIJ, 2770f4259b30SLisandro Dalcin NULL, 2771f4259b30SLisandro Dalcin NULL, 27728bb0f5c6SPierre Jolivet /*64*/ MatMatMatMultNumeric_MPIAIJ_MPIAIJ_MPIAIJ, 2773f4259b30SLisandro Dalcin NULL, 2774f4259b30SLisandro Dalcin NULL, 2775f4259b30SLisandro Dalcin NULL, 27768bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPIAIJ, 27778bb0f5c6SPierre Jolivet /*69*/ MatGetRowMinAbs_MPIAIJ, 2778f4259b30SLisandro Dalcin NULL, 2779f4259b30SLisandro Dalcin NULL, 27808bb0f5c6SPierre Jolivet MatFDColoringApply_AIJ, 2781b1b1104fSBarry Smith MatSetFromOptions_MPIAIJ, 2782f1f41ecbSJed Brown MatFindZeroDiagonals_MPIAIJ, 27838bb0f5c6SPierre Jolivet /*75*/ NULL, 27848bb0f5c6SPierre Jolivet NULL, 27858bb0f5c6SPierre Jolivet NULL, 27868bb0f5c6SPierre Jolivet MatLoad_MPIAIJ, 27878bb0f5c6SPierre Jolivet NULL, 2788f4259b30SLisandro Dalcin /*80*/ NULL, 2789f4259b30SLisandro Dalcin NULL, 2790f4259b30SLisandro Dalcin NULL, 27918bb0f5c6SPierre Jolivet /*83*/ NULL, 2792f4259b30SLisandro Dalcin NULL, 279326be0446SHong Zhang MatMatMultNumeric_MPIAIJ_MPIAIJ, 27948bb0f5c6SPierre Jolivet MatPtAPNumeric_MPIAIJ_MPIAIJ, 2795f4259b30SLisandro Dalcin NULL, 2796f4259b30SLisandro Dalcin NULL, 27978bb0f5c6SPierre Jolivet /*89*/ MatBindToCPU_MPIAIJ, 27988bb0f5c6SPierre Jolivet MatProductSetFromOptions_MPIAIJ, 2799f4259b30SLisandro Dalcin NULL, 2800f4259b30SLisandro Dalcin NULL, 28012fd7e33dSBarry Smith MatConjugate_MPIAIJ, 28028bb0f5c6SPierre Jolivet /*94*/ NULL, 28038bb0f5c6SPierre Jolivet MatSetValuesRow_MPIAIJ, 280499cafbc1SBarry Smith MatRealPart_MPIAIJ, 280569db28dcSHong Zhang MatImaginaryPart_MPIAIJ, 2806f4259b30SLisandro Dalcin NULL, 28078bb0f5c6SPierre Jolivet /*99*/ NULL, 2808f4259b30SLisandro Dalcin NULL, 2809f4259b30SLisandro Dalcin NULL, 28105494a064SHong Zhang MatGetRowMin_MPIAIJ, 2811f4259b30SLisandro Dalcin NULL, 2812421480d9SBarry Smith /*104*/ MatGetSeqNonzeroStructure_MPIAIJ, 2813f4259b30SLisandro Dalcin NULL, 2814c5e4d11fSDmitry Karpeev MatGetGhosts_MPIAIJ, 2815f4259b30SLisandro Dalcin NULL, 2816421480d9SBarry Smith NULL, 2817421480d9SBarry Smith /*109*/ MatMultDiagonalBlock_MPIAIJ, 2818f4259b30SLisandro Dalcin NULL, 2819f4259b30SLisandro Dalcin NULL, 2820f4259b30SLisandro Dalcin NULL, 2821421480d9SBarry Smith MatGetMultiProcBlock_MPIAIJ, 2822421480d9SBarry Smith /*114*/ MatFindNonzeroRows_MPIAIJ, 2823a873a8cdSSam Reynolds MatGetColumnReductions_MPIAIJ, 2824bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIAIJ, 2825a8ee9fb5SBarry Smith MatInvertVariableBlockDiagonal_MPIAIJ, 2826421480d9SBarry Smith MatCreateSubMatricesMPI_MPIAIJ, 2827421480d9SBarry Smith /*119*/ NULL, 2828f4259b30SLisandro Dalcin NULL, 2829187b3c17SHong Zhang MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ, 2830f4259b30SLisandro Dalcin NULL, 2831f4259b30SLisandro Dalcin NULL, 2832421480d9SBarry Smith /*124*/ NULL, 2833f4259b30SLisandro Dalcin NULL, 28348bb0f5c6SPierre Jolivet MatSetBlockSizes_MPIAIJ, 2835f4259b30SLisandro Dalcin NULL, 2836421480d9SBarry Smith MatFDColoringSetUp_MPIXAIJ, 2837421480d9SBarry Smith /*129*/ MatFindOffBlockDiagonalEntries_MPIAIJ, 28384222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIAIJ, 2839f4259b30SLisandro Dalcin NULL, 284072833a62Smarkadams4 NULL, 2841421480d9SBarry Smith NULL, 2842421480d9SBarry Smith /*134*/ MatCreateGraph_Simple_AIJ, 28432d776b49SBarry Smith NULL, 2844eede4a3fSMark Adams MatEliminateZeros_MPIAIJ, 28454cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIAIJ, 284642ce410bSJunchao Zhang NULL, 2847421480d9SBarry Smith /*139*/ NULL, 284842ce410bSJunchao Zhang NULL, 284903db1824SAlex Lindsay MatCopyHashToXAIJ_MPI_Hash, 2850c2be7ffeSStefano Zampini MatGetCurrentMemType_MPIAIJ, 2851c2be7ffeSStefano Zampini NULL}; 285236ce4990SBarry Smith 2853ba38deedSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIAIJ(Mat mat) 2854d71ae5a4SJacob Faibussowitsch { 28552e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28562e8a6d31SBarry Smith 28572e8a6d31SBarry Smith PetscFunctionBegin; 28589566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 28599566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 28603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28612e8a6d31SBarry Smith } 28622e8a6d31SBarry Smith 2863ba38deedSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIAIJ(Mat mat) 2864d71ae5a4SJacob Faibussowitsch { 28652e8a6d31SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 28662e8a6d31SBarry Smith 28672e8a6d31SBarry Smith PetscFunctionBegin; 28689566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 28699566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 28703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 28712e8a6d31SBarry Smith } 28728a729477SBarry Smith 2873d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJ(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 2874d71ae5a4SJacob Faibussowitsch { 2875ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 28765d2a9ed1SStefano Zampini PetscMPIInt size; 2877a23d5eceSKris Buschelman 2878a23d5eceSKris Buschelman PetscFunctionBegin; 2879ad79cf63SBarry Smith if (B->hash_active) { 2880aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2881ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2882ad79cf63SBarry Smith } 28839566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 28849566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 2885899cda47SBarry Smith 2886cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2887eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2888cb7b82ddSBarry Smith #else 28899566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2890cb7b82ddSBarry Smith #endif 28919566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 28929566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 28939566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2894cb7b82ddSBarry Smith 28959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2896c508b908SBarry Smith 2897c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 28989566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28999566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 29009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 29019566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->B, B, B)); 29029566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQAIJ)); 2903c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2904cb7b82ddSBarry Smith 2905c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2906ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 29079566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 29089566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 29099566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(b->A, B, B)); 29109566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQAIJ)); 2911c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2912899cda47SBarry Smith 29139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->A, d_nz, d_nnz)); 29149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(b->B, o_nz, o_nnz)); 2915526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2916cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 291715001458SStefano Zampini B->assembled = PETSC_FALSE; 29183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2919a23d5eceSKris Buschelman } 2920a23d5eceSKris Buschelman 2921ba38deedSJacob Faibussowitsch static PetscErrorCode MatResetPreallocation_MPIAIJ(Mat B) 2922d71ae5a4SJacob Faibussowitsch { 2923ad79cf63SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ *)B->data; 29244c51d546SAlexander PetscBool ondiagreset, offdiagreset, memoryreset; 2925846b4da1SFande Kong 2926846b4da1SFande Kong PetscFunctionBegin; 2927846b4da1SFande Kong PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29284c51d546SAlexander PetscCheck(B->insertmode == NOT_SET_VALUES, PETSC_COMM_SELF, PETSC_ERR_SUP, "Cannot reset preallocation after setting some values but not yet calling MatAssemblyBegin()/MatAssemblyEnd()"); 29294c51d546SAlexander if (B->num_ass == 0) PetscFunctionReturn(PETSC_SUCCESS); 29304c51d546SAlexander 29314c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->A, &ondiagreset)); 29324c51d546SAlexander PetscCall(MatResetPreallocation_SeqAIJ_Private(b->B, &offdiagreset)); 29334c51d546SAlexander memoryreset = (PetscBool)(ondiagreset || offdiagreset); 29345440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &memoryreset, 1, MPI_C_BOOL, MPI_LOR, PetscObjectComm((PetscObject)B))); 29354c51d546SAlexander if (!memoryreset) PetscFunctionReturn(PETSC_SUCCESS); 29364c51d546SAlexander 29379566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 29389566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 29394c51d546SAlexander PetscCheck(B->assembled || B->was_assembled, PetscObjectComm((PetscObject)B), PETSC_ERR_ARG_WRONGSTATE, "Should not need to reset preallocation if the matrix was never assembled"); 29404c51d546SAlexander PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_TRUE)); 29419566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2942846b4da1SFande Kong 2943846b4da1SFande Kong B->preallocated = PETSC_TRUE; 2944846b4da1SFande Kong B->was_assembled = PETSC_FALSE; 2945846b4da1SFande Kong B->assembled = PETSC_FALSE; 2946b3a35320SAlex Lindsay /* Log that the state of this object has changed; this will help guarantee that preconditioners get re-setup */ 2947b3a35320SAlex Lindsay PetscCall(PetscObjectStateIncrease((PetscObject)B)); 29483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2949846b4da1SFande Kong } 2950846b4da1SFande Kong 2951d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDuplicate_MPIAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 2952d71ae5a4SJacob Faibussowitsch { 2953d6dfbf8fSBarry Smith Mat mat; 2954416022c9SBarry Smith Mat_MPIAIJ *a, *oldmat = (Mat_MPIAIJ *)matin->data; 2955d6dfbf8fSBarry Smith 29563a40ed3dSBarry Smith PetscFunctionBegin; 2957f4259b30SLisandro Dalcin *newmat = NULL; 29589566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 29599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 29609566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(mat, matin, matin)); 29619566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 2962273d9f13SBarry Smith a = (Mat_MPIAIJ *)mat->data; 2963e1b6402fSHong Zhang 2964d5f3da31SBarry Smith mat->factortype = matin->factortype; 2965501880eeSStefano Zampini mat->assembled = matin->assembled; 2966e7641de0SSatish Balay mat->insertmode = NOT_SET_VALUES; 2967d6dfbf8fSBarry Smith 296817699dbbSLois Curfman McInnes a->size = oldmat->size; 296917699dbbSLois Curfman McInnes a->rank = oldmat->rank; 2970e7641de0SSatish Balay a->donotstash = oldmat->donotstash; 2971e7641de0SSatish Balay a->roworiented = oldmat->roworiented; 2972501880eeSStefano Zampini a->rowindices = NULL; 2973501880eeSStefano Zampini a->rowvalues = NULL; 2974bcd2baecSBarry Smith a->getrowactive = PETSC_FALSE; 2975d6dfbf8fSBarry Smith 29769566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 29779566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 2978420957c1SBarry Smith if (matin->hash_active) { 2979420957c1SBarry Smith PetscCall(MatSetUp(mat)); 2980420957c1SBarry Smith } else { 2981420957c1SBarry Smith mat->preallocated = matin->preallocated; 29822ee70a88SLois Curfman McInnes if (oldmat->colmap) { 2983aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2984eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 2985b1fc9764SSatish Balay #else 29869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &a->colmap)); 29879566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, mat->cmap->N)); 2988b1fc9764SSatish Balay #endif 2989501880eeSStefano Zampini } else a->colmap = NULL; 29903f41c07dSBarry Smith if (oldmat->garray) { 2991b1d57f15SBarry Smith PetscInt len; 2992d0f46423SBarry Smith len = oldmat->B->cmap->n; 299384648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &a->garray)); 29949566063dSJacob Faibussowitsch if (len) PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 2995501880eeSStefano Zampini } else a->garray = NULL; 2996d6dfbf8fSBarry Smith 29970de76c62SStefano Zampini /* It may happen MatDuplicate is called with a non-assembled matrix 29980de76c62SStefano Zampini In fact, MatDuplicate only requires the matrix to be preallocated 29990de76c62SStefano Zampini This may happen inside a DMCreateMatrix_Shell */ 3000aa624791SPierre Jolivet if (oldmat->lvec) PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 3001cff58d65SJunchao Zhang if (oldmat->Mvctx) { 3002cff58d65SJunchao Zhang a->Mvctx = oldmat->Mvctx; 3003cff58d65SJunchao Zhang PetscCall(PetscObjectReference((PetscObject)oldmat->Mvctx)); 3004cff58d65SJunchao Zhang } 30059566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 30069566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3007420957c1SBarry Smith } 30089566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 30098a729477SBarry Smith *newmat = mat; 30103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30118a729477SBarry Smith } 3012416022c9SBarry Smith 3013d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ(Mat newMat, PetscViewer viewer) 3014d71ae5a4SJacob Faibussowitsch { 301552f91c60SVaclav Hapla PetscBool isbinary, ishdf5; 301652f91c60SVaclav Hapla 301752f91c60SVaclav Hapla PetscFunctionBegin; 301852f91c60SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 301952f91c60SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 3020c27b3999SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 30219566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30229566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 30239566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 302452f91c60SVaclav Hapla if (isbinary) { 30259566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIAIJ_Binary(newMat, viewer)); 302652f91c60SVaclav Hapla } else if (ishdf5) { 302752f91c60SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 30289566063dSJacob Faibussowitsch PetscCall(MatLoad_AIJ_HDF5(newMat, viewer)); 302952f91c60SVaclav Hapla #else 303052f91c60SVaclav Hapla SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "HDF5 not supported in this build.\nPlease reconfigure using --download-hdf5"); 303152f91c60SVaclav Hapla #endif 303252f91c60SVaclav Hapla } else { 303398921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 303452f91c60SVaclav Hapla } 30353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 303652f91c60SVaclav Hapla } 303752f91c60SVaclav Hapla 3038d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIAIJ_Binary(Mat mat, PetscViewer viewer) 3039d71ae5a4SJacob Faibussowitsch { 30403ea6fe3dSLisandro Dalcin PetscInt header[4], M, N, m, nz, rows, cols, sum, i; 30413ea6fe3dSLisandro Dalcin PetscInt *rowidxs, *colidxs; 30423ea6fe3dSLisandro Dalcin PetscScalar *matvals; 30438fb81238SShri Abhyankar 30448fb81238SShri Abhyankar PetscFunctionBegin; 30459566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 30468fb81238SShri Abhyankar 30473ea6fe3dSLisandro Dalcin /* read in matrix header */ 30489566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 304908401ef6SPierre Jolivet PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 30509371c9d4SSatish Balay M = header[1]; 30519371c9d4SSatish Balay N = header[2]; 30529371c9d4SSatish Balay nz = header[3]; 305308401ef6SPierre Jolivet PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 305408401ef6SPierre Jolivet PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 305508401ef6SPierre Jolivet PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIAIJ"); 305608ea439dSMark F. Adams 30573ea6fe3dSLisandro Dalcin /* set block sizes from the viewer's .info file */ 30589566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 30593ea6fe3dSLisandro Dalcin /* set global sizes if not set already */ 30603ea6fe3dSLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 30613ea6fe3dSLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 30629566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 30639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 30648fb81238SShri Abhyankar 30653ea6fe3dSLisandro Dalcin /* check if the matrix sizes are correct */ 30669566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 3067aed4548fSBarry Smith PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 30688fb81238SShri Abhyankar 30693ea6fe3dSLisandro Dalcin /* read in row lengths and build row indices */ 30709566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 30719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 30729566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 30739371c9d4SSatish Balay rowidxs[0] = 0; 30749371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 30751690c2aeSBarry Smith if (nz != PETSC_INT_MAX) { 3076462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 307708401ef6SPierre Jolivet PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 307838b83642SBarry Smith } 307938b83642SBarry Smith 30803ea6fe3dSLisandro Dalcin /* read in column indices and matrix values */ 30819566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 30829566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 30839566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 30843ea6fe3dSLisandro Dalcin /* store matrix indices and values */ 30859566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(mat, rowidxs, colidxs, matvals)); 30869566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 30879566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 30883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30898fb81238SShri Abhyankar } 30908fb81238SShri Abhyankar 30913782ecc7SHong Zhang /* Not scalable because of ISAllGather() unless getting all columns. */ 3092ba38deedSJacob Faibussowitsch static PetscErrorCode ISGetSeqIS_Private(Mat mat, IS iscol, IS *isseq) 3093d71ae5a4SJacob Faibussowitsch { 30944aa3045dSJed Brown IS iscol_local; 3095c5e4d11fSDmitry Karpeev PetscBool isstride; 30969725ddffSPierre Jolivet PetscMPIInt gisstride = 0; 30973782ecc7SHong Zhang 30983782ecc7SHong Zhang PetscFunctionBegin; 30993782ecc7SHong Zhang /* check if we are grabbing all columns*/ 31009566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)iscol, ISSTRIDE, &isstride)); 31013782ecc7SHong Zhang 3102c5e4d11fSDmitry Karpeev if (isstride) { 3103c5e4d11fSDmitry Karpeev PetscInt start, len, mstart, mlen; 31049566063dSJacob Faibussowitsch PetscCall(ISStrideGetInfo(iscol, &start, NULL)); 31059566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &len)); 31069566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &mstart, &mlen)); 31079725ddffSPierre Jolivet if (mstart == start && mlen - mstart == len) gisstride = 1; 3108c5e4d11fSDmitry Karpeev } 31093782ecc7SHong Zhang 31109725ddffSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &gisstride, 1, MPI_INT, MPI_MIN, PetscObjectComm((PetscObject)mat))); 3111c5e4d11fSDmitry Karpeev if (gisstride) { 3112c5e4d11fSDmitry Karpeev PetscInt N; 31139566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, NULL, &N)); 31149566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, N, 0, 1, &iscol_local)); 31159566063dSJacob Faibussowitsch PetscCall(ISSetIdentity(iscol_local)); 31169566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Optimizing for obtaining all columns of the matrix; skipping ISAllGather()\n")); 3117c5e4d11fSDmitry Karpeev } else { 3118c5bfad50SMark F. Adams PetscInt cbs; 31199566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 31209566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 31219566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_local, cbs)); 3122b79d0421SJed Brown } 31233782ecc7SHong Zhang 31243782ecc7SHong Zhang *isseq = iscol_local; 31253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3126c5e4d11fSDmitry Karpeev } 31278d2139bdSHong Zhang 3128ddfdf956SHong Zhang /* 31299c988bcaSHong Zhang Used by MatCreateSubMatrix_MPIAIJ_SameRowColDist() to avoid ISAllGather() and global size of iscol_local 31309c988bcaSHong Zhang (see MatCreateSubMatrix_MPIAIJ_nonscalable) 3131ddfdf956SHong Zhang 3132ddfdf956SHong Zhang Input Parameters: 313327430b45SBarry Smith + mat - matrix 313427430b45SBarry Smith . isrow - parallel row index set; its local indices are a subset of local columns of `mat`, 31359c988bcaSHong Zhang i.e., mat->rstart <= isrow[i] < mat->rend 313627430b45SBarry Smith - iscol - parallel column index set; its local indices are a subset of local columns of `mat`, 3137ddfdf956SHong Zhang i.e., mat->cstart <= iscol[i] < mat->cend 313827430b45SBarry Smith 313927430b45SBarry Smith Output Parameters: 314027430b45SBarry Smith + isrow_d - sequential row index set for retrieving mat->A 314127430b45SBarry Smith . iscol_d - sequential column index set for retrieving mat->A 314227430b45SBarry Smith . iscol_o - sequential column index set for retrieving mat->B 314327430b45SBarry Smith - garray - column map; garray[i] indicates global location of iscol_o[i] in `iscol` 3144ddfdf956SHong Zhang */ 3145835f2295SStefano Zampini static PetscErrorCode ISGetSeqIS_SameColDist_Private(Mat mat, IS isrow, IS iscol, IS *isrow_d, IS *iscol_d, IS *iscol_o, PetscInt *garray[]) 3146d71ae5a4SJacob Faibussowitsch { 3147040216a4SHong Zhang Vec x, cmap; 3148040216a4SHong Zhang const PetscInt *is_idx; 3149040216a4SHong Zhang PetscScalar *xarray, *cmaparray; 31509c988bcaSHong Zhang PetscInt ncols, isstart, *idx, m, rstart, *cmap1, count; 3151040216a4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 3152040216a4SHong Zhang Mat B = a->B; 3153040216a4SHong Zhang Vec lvec = a->lvec, lcmap; 3154a31a438cSHong Zhang PetscInt i, cstart, cend, Bn = B->cmap->N; 31558b3fa1f7SHong Zhang MPI_Comm comm; 31563a8d973cSHong Zhang VecScatter Mvctx = a->Mvctx; 31573782ecc7SHong Zhang 31583782ecc7SHong Zhang PetscFunctionBegin; 31599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 31609566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 31618b3fa1f7SHong Zhang 3162ddfdf956SHong Zhang /* (1) iscol is a sub-column vector of mat, pad it with '-1.' to form a full vector x */ 31639566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mat, &x, NULL)); 31649566063dSJacob Faibussowitsch PetscCall(VecSet(x, -1.0)); 31659566063dSJacob Faibussowitsch PetscCall(VecDuplicate(x, &cmap)); 31669566063dSJacob Faibussowitsch PetscCall(VecSet(cmap, -1.0)); 31670a351717SHong Zhang 31689c988bcaSHong Zhang /* Get start indices */ 31699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&ncols, &isstart, 1, MPIU_INT, MPI_SUM, comm)); 3170ddfdf956SHong Zhang isstart -= ncols; 31719566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &cstart, &cend)); 3172040216a4SHong Zhang 31739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol, &is_idx)); 31749566063dSJacob Faibussowitsch PetscCall(VecGetArray(x, &xarray)); 31759566063dSJacob Faibussowitsch PetscCall(VecGetArray(cmap, &cmaparray)); 31769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncols, &idx)); 3177ddfdf956SHong Zhang for (i = 0; i < ncols; i++) { 31788b3fa1f7SHong Zhang xarray[is_idx[i] - cstart] = (PetscScalar)is_idx[i]; 3179ddfdf956SHong Zhang cmaparray[is_idx[i] - cstart] = i + isstart; /* global index of iscol[i] */ 31809c988bcaSHong Zhang idx[i] = is_idx[i] - cstart; /* local index of iscol[i] */ 31818b3fa1f7SHong Zhang } 31829566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(x, &xarray)); 31839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(cmap, &cmaparray)); 31849566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol, &is_idx)); 31858b3fa1f7SHong Zhang 31869c988bcaSHong Zhang /* Get iscol_d */ 31879566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, iscol_d)); 31889566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &i)); 31899566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*iscol_d, i)); 3190feb78a15SHong Zhang 31919c988bcaSHong Zhang /* Get isrow_d */ 31929566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &m)); 3193feb78a15SHong Zhang rstart = mat->rmap->rstart; 31949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idx)); 31959566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &is_idx)); 31969c988bcaSHong Zhang for (i = 0; i < m; i++) idx[i] = is_idx[i] - rstart; 31979566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &is_idx)); 3198feb78a15SHong Zhang 31999566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, m, idx, PETSC_OWN_POINTER, isrow_d)); 32009566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &i)); 32019566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(*isrow_d, i)); 3202feb78a15SHong Zhang 32039c988bcaSHong Zhang /* (2) Scatter x and cmap using aij->Mvctx to get their off-process portions (see MatMult_MPIAIJ) */ 32049566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 32059566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, x, lvec, INSERT_VALUES, SCATTER_FORWARD)); 3206ddfdf956SHong Zhang 32079566063dSJacob Faibussowitsch PetscCall(VecDuplicate(lvec, &lcmap)); 320807250d77SHong Zhang 32099566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 32109566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(Mvctx, cmap, lcmap, INSERT_VALUES, SCATTER_FORWARD)); 321164efcef9SHong Zhang 32129c988bcaSHong Zhang /* (3) create sequential iscol_o (a subset of iscol) and isgarray */ 3213ddfdf956SHong Zhang /* off-process column indices */ 32149c988bcaSHong Zhang count = 0; 32159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &idx)); 32169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bn, &cmap1)); 3217feb78a15SHong Zhang 32189566063dSJacob Faibussowitsch PetscCall(VecGetArray(lvec, &xarray)); 32199566063dSJacob Faibussowitsch PetscCall(VecGetArray(lcmap, &cmaparray)); 32208b3fa1f7SHong Zhang for (i = 0; i < Bn; i++) { 3221f73421bfSHong Zhang if (PetscRealPart(xarray[i]) > -1.0) { 32229c988bcaSHong Zhang idx[count] = i; /* local column index in off-diagonal part B */ 32231c645242SHong Zhang cmap1[count] = (PetscInt)PetscRealPart(cmaparray[i]); /* column index in submat */ 32241c645242SHong Zhang count++; 32258b3fa1f7SHong Zhang } 32268b3fa1f7SHong Zhang } 32279566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lvec, &xarray)); 32289566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lcmap, &cmaparray)); 322907250d77SHong Zhang 32309566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_COPY_VALUES, iscol_o)); 3231b6d9b4e0SHong Zhang /* cannot ensure iscol_o has same blocksize as iscol! */ 3232b6d9b4e0SHong Zhang 32339566063dSJacob Faibussowitsch PetscCall(PetscFree(idx)); 32349c988bcaSHong Zhang *garray = cmap1; 32359c988bcaSHong Zhang 32369566063dSJacob Faibussowitsch PetscCall(VecDestroy(&x)); 32379566063dSJacob Faibussowitsch PetscCall(VecDestroy(&cmap)); 32389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lcmap)); 32393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3240040216a4SHong Zhang } 3241040216a4SHong Zhang 3242b20e2604SHong Zhang /* isrow and iscol have same processor distribution as mat, output *submat is a submatrix of local mat */ 3243d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowColDist(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *submat) 3244d71ae5a4SJacob Faibussowitsch { 3245b20e2604SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data, *asub; 32461fd43edeSHong Zhang Mat M = NULL; 32473b00a383SHong Zhang MPI_Comm comm; 3248b20e2604SHong Zhang IS iscol_d, isrow_d, iscol_o; 32493b00a383SHong Zhang Mat Asub = NULL, Bsub = NULL; 3250c0c276a7Ssdargavi PetscInt n, count, M_size, N_size; 32513b00a383SHong Zhang 32523b00a383SHong Zhang PetscFunctionBegin; 32539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 32543b00a383SHong Zhang 32553b00a383SHong Zhang if (call == MAT_REUSE_MATRIX) { 3256b20e2604SHong Zhang /* Retrieve isrow_d, iscol_d and iscol_o from submat */ 32579566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "isrow_d", (PetscObject *)&isrow_d)); 325828b400f6SJacob Faibussowitsch PetscCheck(isrow_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "isrow_d passed in was not used before, cannot reuse"); 32593b00a383SHong Zhang 32609566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_d", (PetscObject *)&iscol_d)); 326128b400f6SJacob Faibussowitsch PetscCheck(iscol_d, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_d passed in was not used before, cannot reuse"); 32623b00a383SHong Zhang 32639566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*submat, "iscol_o", (PetscObject *)&iscol_o)); 326428b400f6SJacob Faibussowitsch PetscCheck(iscol_o, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "iscol_o passed in was not used before, cannot reuse"); 32653b00a383SHong Zhang 3266b20e2604SHong Zhang /* Update diagonal and off-diagonal portions of submat */ 3267b20e2604SHong Zhang asub = (Mat_MPIAIJ *)(*submat)->data; 32689566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->A)); 32699566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &n)); 327048a46eb9SPierre Jolivet if (n) PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_REUSE_MATRIX, &asub->B)); 32719566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*submat, MAT_FINAL_ASSEMBLY)); 32729566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*submat, MAT_FINAL_ASSEMBLY)); 32733b00a383SHong Zhang 32743b00a383SHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 3275c0c276a7Ssdargavi PetscInt *garray, *garray_compact; 3276b20e2604SHong Zhang PetscInt BsubN; 32773b00a383SHong Zhang 3278b20e2604SHong Zhang /* Create isrow_d, iscol_d, iscol_o and isgarray (replace isgarray with array?) */ 32799566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_SameColDist_Private(mat, isrow, iscol, &isrow_d, &iscol_d, &iscol_o, &garray)); 32803b00a383SHong Zhang 3281b20e2604SHong Zhang /* Create local submatrices Asub and Bsub */ 32829566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->A, isrow_d, iscol_d, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Asub)); 32839566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_SeqAIJ(a->B, isrow_d, iscol_o, PETSC_DECIDE, MAT_INITIAL_MATRIX, &Bsub)); 32843b00a383SHong Zhang 3285c0c276a7Ssdargavi // Compact garray so its not of size Bn 3286c0c276a7Ssdargavi PetscCall(ISGetSize(iscol_o, &count)); 3287c0c276a7Ssdargavi PetscCall(PetscMalloc1(count, &garray_compact)); 3288c0c276a7Ssdargavi PetscCall(PetscArraycpy(garray_compact, garray, count)); 3289c0c276a7Ssdargavi 32909c988bcaSHong Zhang /* Create submatrix M */ 3291c0c276a7Ssdargavi PetscCall(ISGetSize(isrow, &M_size)); 3292c0c276a7Ssdargavi PetscCall(ISGetSize(iscol, &N_size)); 3293c0c276a7Ssdargavi PetscCall(MatCreateMPIAIJWithSeqAIJ(comm, M_size, N_size, Asub, Bsub, garray_compact, &M)); 32943b00a383SHong Zhang 3295b20e2604SHong Zhang /* If Bsub has empty columns, compress iscol_o such that it will retrieve condensed Bsub from a->B during reuse */ 3296b20e2604SHong Zhang asub = (Mat_MPIAIJ *)M->data; 32977cfce09cSHong Zhang 32989566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_o, &BsubN)); 3299b20e2604SHong Zhang n = asub->B->cmap->N; 3300b20e2604SHong Zhang if (BsubN > n) { 3301c4762a1bSJed Brown /* This case can be tested using ~petsc/src/tao/bound/tutorials/runplate2_3 */ 33027cfce09cSHong Zhang const PetscInt *idx; 33039c988bcaSHong Zhang PetscInt i, j, *idx_new, *subgarray = asub->garray; 33049566063dSJacob Faibussowitsch PetscCall(PetscInfo(M, "submatrix Bn %" PetscInt_FMT " != BsubN %" PetscInt_FMT ", update iscol_o\n", n, BsubN)); 33057cfce09cSHong Zhang 33069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &idx_new)); 33077cfce09cSHong Zhang j = 0; 33089566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_o, &idx)); 3309b20e2604SHong Zhang for (i = 0; i < n; i++) { 33107cfce09cSHong Zhang if (j >= BsubN) break; 33119c988bcaSHong Zhang while (subgarray[i] > garray[j]) j++; 33127cfce09cSHong Zhang 3313966bd95aSPierre Jolivet PetscCheck(subgarray[i] == garray[j], PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "subgarray[%" PetscInt_FMT "]=%" PetscInt_FMT " cannot < garray[%" PetscInt_FMT "]=%" PetscInt_FMT, i, subgarray[i], j, garray[j]); 33147cfce09cSHong Zhang idx_new[i] = idx[j++]; 33157cfce09cSHong Zhang } 33169566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_o, &idx)); 33177cfce09cSHong Zhang 33189566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33199566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, n, idx_new, PETSC_OWN_POINTER, &iscol_o)); 33207cfce09cSHong Zhang 3321966bd95aSPierre Jolivet } else PetscCheck(BsubN >= n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Columns of Bsub (%" PetscInt_FMT ") cannot be smaller than B's (%" PetscInt_FMT ")", BsubN, asub->B->cmap->N); 33227cfce09cSHong Zhang 33239566063dSJacob Faibussowitsch PetscCall(PetscFree(garray)); 3324b20e2604SHong Zhang *submat = M; 33253b00a383SHong Zhang 3326e489de8fSHong Zhang /* Save isrow_d, iscol_d and iscol_o used in processor for next request */ 33279566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "isrow_d", (PetscObject)isrow_d)); 33289566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_d)); 33293b00a383SHong Zhang 33309566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_d", (PetscObject)iscol_d)); 33319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_d)); 33323b00a383SHong Zhang 33339566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "iscol_o", (PetscObject)iscol_o)); 33349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_o)); 33353b00a383SHong Zhang } 33363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33373b00a383SHong Zhang } 33383b00a383SHong Zhang 3339d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 3340d71ae5a4SJacob Faibussowitsch { 33411358a193SHong Zhang IS iscol_local = NULL, isrow_d; 33423782ecc7SHong Zhang PetscInt csize; 334318e627e3SHong Zhang PetscInt n, i, j, start, end; 33444a3daf6eSHong Zhang PetscBool sameRowDist = PETSC_FALSE, sameDist[2], tsameDist[2]; 33453782ecc7SHong Zhang MPI_Comm comm; 33463782ecc7SHong Zhang 33473782ecc7SHong Zhang PetscFunctionBegin; 3348bcae8d28SHong Zhang /* If isrow has same processor distribution as mat, 3349a31a438cSHong Zhang call MatCreateSubMatrix_MPIAIJ_SameRowDist() to avoid using a hash table with global size of iscol */ 33508f69fa7bSHong Zhang if (call == MAT_REUSE_MATRIX) { 33519566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "isrow_d", (PetscObject *)&isrow_d)); 3352d5761cdaSHong Zhang if (isrow_d) { 3353d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3354d5761cdaSHong Zhang tsameDist[1] = PETSC_TRUE; /* sameColDist */ 3355d5761cdaSHong Zhang } else { 33569566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_local)); 3357d5761cdaSHong Zhang if (iscol_local) { 3358d5761cdaSHong Zhang sameRowDist = PETSC_TRUE; 3359d5761cdaSHong Zhang tsameDist[1] = PETSC_FALSE; /* !sameColDist */ 3360d5761cdaSHong Zhang } 3361d5761cdaSHong Zhang } 33628f69fa7bSHong Zhang } else { 3363e489de8fSHong Zhang /* Check if isrow has same processor distribution as mat */ 336418e627e3SHong Zhang sameDist[0] = PETSC_FALSE; 33659566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &n)); 33663782ecc7SHong Zhang if (!n) { 336718e627e3SHong Zhang sameDist[0] = PETSC_TRUE; 33683782ecc7SHong Zhang } else { 33699566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(isrow, &i, &j)); 33709566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(mat, &start, &end)); 3371ad540459SPierre Jolivet if (i >= start && j < end) sameDist[0] = PETSC_TRUE; 33728f69fa7bSHong Zhang } 33733782ecc7SHong Zhang 3374e489de8fSHong Zhang /* Check if iscol has same processor distribution as mat */ 337518e627e3SHong Zhang sameDist[1] = PETSC_FALSE; 33769566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 337718e627e3SHong Zhang if (!n) { 337818e627e3SHong Zhang sameDist[1] = PETSC_TRUE; 337918e627e3SHong Zhang } else { 33809566063dSJacob Faibussowitsch PetscCall(ISGetMinMax(iscol, &i, &j)); 33819566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(mat, &start, &end)); 338218e627e3SHong Zhang if (i >= start && j < end) sameDist[1] = PETSC_TRUE; 338318e627e3SHong Zhang } 338418e627e3SHong Zhang 33859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 33865440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&sameDist, &tsameDist, 2, MPI_C_BOOL, MPI_LAND, comm)); 338718e627e3SHong Zhang sameRowDist = tsameDist[0]; 338818e627e3SHong Zhang } 338918e627e3SHong Zhang 339018e627e3SHong Zhang if (sameRowDist) { 3391b20e2604SHong Zhang if (tsameDist[1]) { /* sameRowDist & sameColDist */ 33923b00a383SHong Zhang /* isrow and iscol have same processor distribution as mat */ 33939566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowColDist(mat, isrow, iscol, call, newmat)); 33943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3395b20e2604SHong Zhang } else { /* sameRowDist */ 33963b00a383SHong Zhang /* isrow has same processor distribution as mat */ 33971358a193SHong Zhang if (call == MAT_INITIAL_MATRIX) { 33981358a193SHong Zhang PetscBool sorted; 33999566063dSJacob Faibussowitsch PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34009566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_local, &n)); /* local size of iscol_local = global columns of newmat */ 34019566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &i)); 340208401ef6SPierre Jolivet PetscCheck(n == i, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "n %" PetscInt_FMT " != size of iscol %" PetscInt_FMT, n, i); 34031358a193SHong Zhang 34049566063dSJacob Faibussowitsch PetscCall(ISSorted(iscol_local, &sorted)); 34051358a193SHong Zhang if (sorted) { 34061358a193SHong Zhang /* MatCreateSubMatrix_MPIAIJ_SameRowDist() requires iscol_local be sorted; it can have duplicate indices */ 34079566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, iscol_local, MAT_INITIAL_MATRIX, newmat)); 34083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34093782ecc7SHong Zhang } 34101358a193SHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 341148c0d076SHong Zhang IS iscol_sub; 34129566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 341348c0d076SHong Zhang if (iscol_sub) { 34149566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_SameRowDist(mat, isrow, iscol, NULL, call, newmat)); 34153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 341648c0d076SHong Zhang } 34171358a193SHong Zhang } 34181358a193SHong Zhang } 34191358a193SHong Zhang } 34203782ecc7SHong Zhang 3421bcae8d28SHong Zhang /* General case: iscol -> iscol_local which has global size of iscol */ 34223782ecc7SHong Zhang if (call == MAT_REUSE_MATRIX) { 34239566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 342428b400f6SJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 34253782ecc7SHong Zhang } else { 342648a46eb9SPierre Jolivet if (!iscol_local) PetscCall(ISGetSeqIS_Private(mat, iscol, &iscol_local)); 34271358a193SHong Zhang } 34283782ecc7SHong Zhang 34299566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 34309566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIAIJ_nonscalable(mat, isrow, iscol_local, csize, call, newmat)); 34318f69fa7bSHong Zhang 3432b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 34339566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 34349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3435b79d0421SJed Brown } 34363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 34374aa3045dSJed Brown } 34384aa3045dSJed Brown 3439feb78a15SHong Zhang /*@C 344011a5261eSBarry Smith MatCreateMPIAIJWithSeqAIJ - creates a `MATMPIAIJ` matrix using `MATSEQAIJ` matrices that contain the "diagonal" 3441feb78a15SHong Zhang and "off-diagonal" part of the matrix in CSR format. 3442feb78a15SHong Zhang 3443d083f849SBarry Smith Collective 3444feb78a15SHong Zhang 3445feb78a15SHong Zhang Input Parameters: 3446feb78a15SHong Zhang + comm - MPI communicator 3447c0c276a7Ssdargavi . M - the global row size 3448c0c276a7Ssdargavi . N - the global column size 3449feb78a15SHong Zhang . A - "diagonal" portion of matrix 3450c0c276a7Ssdargavi . B - if garray is `NULL`, B should be the offdiag matrix using global col ids and of size N - if garray is not `NULL`, B should be the offdiag matrix using local col ids and of size garray 3451a3156c1cSJunchao Zhang - garray - either `NULL` or the global index of `B` columns. If not `NULL`, it should be allocated by `PetscMalloc1()` and will be owned by `mat` thereafter. 3452feb78a15SHong Zhang 3453feb78a15SHong Zhang Output Parameter: 34542ef1f0ffSBarry Smith . mat - the matrix, with input `A` as its local diagonal matrix 345527430b45SBarry Smith 3456feb78a15SHong Zhang Level: advanced 3457feb78a15SHong Zhang 3458feb78a15SHong Zhang Notes: 345911a5261eSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix. 346011a5261eSBarry Smith 3461c0c276a7Ssdargavi `A` and `B` becomes part of output mat. The user cannot use `A` and `B` anymore. 3462feb78a15SHong Zhang 3463a3156c1cSJunchao Zhang If `garray` is `NULL`, `B` will be compacted to use local indices. In this sense, `B`'s sparsity pattern (nonzerostate) will be changed. If `B` is a device matrix, we need to somehow also update 3464a3156c1cSJunchao Zhang `B`'s copy on device. We do so by increasing `B`'s nonzerostate. In use of `B` on device, device matrix types should detect this change (ref. internal routines `MatSeqAIJCUSPARSECopyToGPU()` or 3465a3156c1cSJunchao Zhang `MatAssemblyEnd_SeqAIJKokkos()`) and will just destroy and then recreate the device copy of `B`. It is not optimal, but is easy to implement and less hacky. To avoid this overhead, try to compute `garray` 3466a3156c1cSJunchao Zhang yourself, see algorithms in the private function `MatSetUpMultiply_MPIAIJ()`. 3467a3156c1cSJunchao Zhang 3468b1dff882SJunchao Zhang The `NULL`-ness of `garray` doesn't need to be collective, in other words, `garray` can be `NULL` on some processes while not on others. 3469b1dff882SJunchao Zhang 34701cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MATSEQAIJ`, `MatCreateMPIAIJWithSplitArrays()` 3471feb78a15SHong Zhang @*/ 3472c0c276a7Ssdargavi PetscErrorCode MatCreateMPIAIJWithSeqAIJ(MPI_Comm comm, PetscInt M, PetscInt N, Mat A, Mat B, PetscInt *garray, Mat *mat) 3473d71ae5a4SJacob Faibussowitsch { 3474c0c276a7Ssdargavi PetscInt m, n; 34754ab4d6f4SRichard Tran Mills MatType mpi_mat_type; 3476f18d1d10SJunchao Zhang Mat_MPIAIJ *mpiaij; 3477f18d1d10SJunchao Zhang Mat C; 3478feb78a15SHong Zhang 3479feb78a15SHong Zhang PetscFunctionBegin; 3480f18d1d10SJunchao Zhang PetscCall(MatCreate(comm, &C)); 34819566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 348208401ef6SPierre Jolivet PetscCheck(m == B->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Am %" PetscInt_FMT " != Bm %" PetscInt_FMT, m, B->rmap->N); 348358b7e2c1SStefano Zampini PetscCheck(A->rmap->bs == B->rmap->bs, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "A row bs %" PetscInt_FMT " != B row bs %" PetscInt_FMT, A->rmap->bs, B->rmap->bs); 3484feb78a15SHong Zhang 3485f18d1d10SJunchao Zhang PetscCall(MatSetSizes(C, m, n, M, N)); 34864ab4d6f4SRichard Tran Mills /* Determine the type of MPI matrix that should be created from the type of matrix A, which holds the "diagonal" portion. */ 34874ab4d6f4SRichard Tran Mills PetscCall(MatGetMPIMatType_Private(A, &mpi_mat_type)); 3488f18d1d10SJunchao Zhang PetscCall(MatSetType(C, mpi_mat_type)); 3489a3156c1cSJunchao Zhang if (!garray) { 3490a3156c1cSJunchao Zhang const PetscScalar *ba; 3491a3156c1cSJunchao Zhang 3492a3156c1cSJunchao Zhang B->nonzerostate++; 3493a3156c1cSJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(B, &ba)); /* Since we will destroy B's device copy, we need to make sure the host copy is up to date */ 3494a3156c1cSJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(B, &ba)); 3495a3156c1cSJunchao Zhang } 34964ab4d6f4SRichard Tran Mills 3497f18d1d10SJunchao Zhang PetscCall(MatSetBlockSizes(C, A->rmap->bs, A->cmap->bs)); 3498f18d1d10SJunchao Zhang PetscCall(PetscLayoutSetUp(C->rmap)); 3499f18d1d10SJunchao Zhang PetscCall(PetscLayoutSetUp(C->cmap)); 3500feb78a15SHong Zhang 3501f18d1d10SJunchao Zhang mpiaij = (Mat_MPIAIJ *)C->data; 3502c0c276a7Ssdargavi mpiaij->A = A; 3503c0c276a7Ssdargavi mpiaij->B = B; 3504c0c276a7Ssdargavi mpiaij->garray = garray; 3505f18d1d10SJunchao Zhang C->preallocated = PETSC_TRUE; 3506f18d1d10SJunchao Zhang C->nooffprocentries = PETSC_TRUE; /* See MatAssemblyBegin_MPIAIJ. In effect, making MatAssemblyBegin a nop */ 3507c0c276a7Ssdargavi 3508f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3509f18d1d10SJunchao Zhang PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3510c0c276a7Ssdargavi /* MatAssemblyEnd is critical here. It sets mat->offloadmask according to A and B's, and 3511c0c276a7Ssdargavi also gets mpiaij->B compacted (if garray is NULL), with its col ids and size reduced 3512c0c276a7Ssdargavi */ 3513f18d1d10SJunchao Zhang PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3514f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 3515f18d1d10SJunchao Zhang PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 3516f18d1d10SJunchao Zhang *mat = C; 35173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3518feb78a15SHong Zhang } 3519feb78a15SHong Zhang 3520ef514586SHong Zhang extern PetscErrorCode MatCreateSubMatrices_MPIAIJ_SingleIS_Local(Mat, PetscInt, const IS[], const IS[], MatReuse, PetscBool, Mat *); 35214aa3045dSJed Brown 3522d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_SameRowDist(Mat mat, IS isrow, IS iscol, IS iscol_local, MatReuse call, Mat *newmat) 3523d71ae5a4SJacob Faibussowitsch { 352498b658c4SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, j, bs, cbs; 352585f27616SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 352698b658c4SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)mat->data; 35271fd43edeSHong Zhang Mat M, Msub, B = a->B; 352898b658c4SHong Zhang MatScalar *aa; 352900e6dbe6SBarry Smith Mat_SeqAIJ *aij; 3530a31a438cSHong Zhang PetscInt *garray = a->garray, *colsub, Ncols; 353198b658c4SHong Zhang PetscInt count, Bn = B->cmap->N, cstart = mat->cmap->rstart, cend = mat->cmap->rend; 353298b658c4SHong Zhang IS iscol_sub, iscmap; 353398b658c4SHong Zhang const PetscInt *is_idx, *cmap; 353418e627e3SHong Zhang PetscBool allcolumns = PETSC_FALSE; 3535a31a438cSHong Zhang MPI_Comm comm; 35367e2c5f70SBarry Smith 3537a0ff6018SBarry Smith PetscFunctionBegin; 35389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 3539d5761cdaSHong Zhang if (call == MAT_REUSE_MATRIX) { 35409566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubIScol", (PetscObject *)&iscol_sub)); 354128b400f6SJacob Faibussowitsch PetscCheck(iscol_sub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "SubIScol passed in was not used before, cannot reuse"); 35429566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 3543d5761cdaSHong Zhang 35449566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "Subcmap", (PetscObject *)&iscmap)); 354528b400f6SJacob Faibussowitsch PetscCheck(iscmap, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Subcmap passed in was not used before, cannot reuse"); 3546d5761cdaSHong Zhang 35479566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Msub)); 354828b400f6SJacob Faibussowitsch PetscCheck(Msub, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 3549d5761cdaSHong Zhang 35509566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_REUSE_MATRIX, PETSC_FALSE, &Msub)); 3551d5761cdaSHong Zhang 3552d5761cdaSHong Zhang } else { /* call == MAT_INITIAL_MATRIX) */ 35533b00a383SHong Zhang PetscBool flg; 35543b00a383SHong Zhang 35559566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 35569566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); 3557bcae8d28SHong Zhang 35583b00a383SHong Zhang /* (1) iscol -> nonscalable iscol_local */ 3559366a327dSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 35609566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol_local, &flg)); 3561366a327dSHong Zhang if (flg && n == mat->cmap->N) allcolumns = PETSC_TRUE; 35625440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 3563366a327dSHong Zhang if (allcolumns) { 3564366a327dSHong Zhang iscol_sub = iscol_local; 35659566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)iscol_local)); 35669566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, n, 0, 1, &iscmap)); 3567366a327dSHong Zhang 35683b00a383SHong Zhang } else { 35691358a193SHong Zhang /* (2) iscol_local -> iscol_sub and iscmap. Implementation below requires iscol_local be sorted, it can have duplicate indices */ 3570244c7f15SHong Zhang PetscInt *idx, *cmap1, k; 35719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &idx)); 35729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Ncols, &cmap1)); 35739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &is_idx)); 35748d2139bdSHong Zhang count = 0; 3575a31a438cSHong Zhang k = 0; 3576a31a438cSHong Zhang for (i = 0; i < Ncols; i++) { 3577a31a438cSHong Zhang j = is_idx[i]; 3578a31a438cSHong Zhang if (j >= cstart && j < cend) { 3579a31a438cSHong Zhang /* diagonal part of mat */ 35808d2139bdSHong Zhang idx[count] = j; 3581366a327dSHong Zhang cmap1[count++] = i; /* column index in submat */ 35824a3daf6eSHong Zhang } else if (Bn) { 3583a31a438cSHong Zhang /* off-diagonal part of mat */ 3584a31a438cSHong Zhang if (j == garray[k]) { 35858d2139bdSHong Zhang idx[count] = j; 3586a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 3587a31a438cSHong Zhang } else if (j > garray[k]) { 3588a31a438cSHong Zhang while (j > garray[k] && k < Bn - 1) k++; 3589a31a438cSHong Zhang if (j == garray[k]) { 3590a31a438cSHong Zhang idx[count] = j; 3591a31a438cSHong Zhang cmap1[count++] = i; /* column index in submat */ 35928d2139bdSHong Zhang } 35938d2139bdSHong Zhang } 35948d2139bdSHong Zhang } 35958d2139bdSHong Zhang } 35969566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &is_idx)); 35978d2139bdSHong Zhang 35989566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, count, idx, PETSC_OWN_POINTER, &iscol_sub)); 35999566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 36009566063dSJacob Faibussowitsch PetscCall(ISSetBlockSize(iscol_sub, cbs)); 3601b6d9b4e0SHong Zhang 36029566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)iscol_local), count, cmap1, PETSC_OWN_POINTER, &iscmap)); 3603a31a438cSHong Zhang } 36048b3fa1f7SHong Zhang 36053b00a383SHong Zhang /* (3) Create sequential Msub */ 36069566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol_sub, MAT_INITIAL_MATRIX, allcolumns, &Msub)); 3607d5761cdaSHong Zhang } 36088d2139bdSHong Zhang 36099566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol_sub, &count)); 361057508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Msub->data; 361198b658c4SHong Zhang ii = aij->i; 36129566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscmap, &cmap)); 3613a0ff6018SBarry Smith 3614a0ff6018SBarry Smith /* 3615a0ff6018SBarry Smith m - number of local rows 3616a31a438cSHong Zhang Ncols - number of columns (same on all processors) 3617a0ff6018SBarry Smith rstart - first row in new global matrix generated 3618a0ff6018SBarry Smith */ 36199566063dSJacob Faibussowitsch PetscCall(MatGetSize(Msub, &m, NULL)); 362098b658c4SHong Zhang 36213b00a383SHong Zhang if (call == MAT_INITIAL_MATRIX) { 36223b00a383SHong Zhang /* (4) Create parallel newmat */ 362398b658c4SHong Zhang PetscMPIInt rank, size; 3624bcae8d28SHong Zhang PetscInt csize; 362598b658c4SHong Zhang 36269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 36279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 362800e6dbe6SBarry Smith 3629a0ff6018SBarry Smith /* 363000e6dbe6SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 363100e6dbe6SBarry Smith portions of the matrix in order to do correct preallocation 3632a0ff6018SBarry Smith */ 363300e6dbe6SBarry Smith 363400e6dbe6SBarry Smith /* first get start and end of "diagonal" columns */ 36359566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 36366a6a5d1dSBarry Smith if (csize == PETSC_DECIDE) { 36379566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3638a31a438cSHong Zhang if (mglobal == Ncols) { /* square matrix */ 3639e2c4fddaSBarry Smith nlocal = m; 36406a6a5d1dSBarry Smith } else { 3641a31a438cSHong Zhang nlocal = Ncols / size + ((Ncols % size) > rank); 3642ab50ec6bSBarry Smith } 3643ab50ec6bSBarry Smith } else { 36446a6a5d1dSBarry Smith nlocal = csize; 36456a6a5d1dSBarry Smith } 36469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 364700e6dbe6SBarry Smith rstart = rend - nlocal; 3648aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == Ncols, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, Ncols); 364900e6dbe6SBarry Smith 365000e6dbe6SBarry Smith /* next, compute all the lengths */ 365198b658c4SHong Zhang jj = aij->j; 36529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 365300e6dbe6SBarry Smith olens = dlens + m; 365400e6dbe6SBarry Smith for (i = 0; i < m; i++) { 365500e6dbe6SBarry Smith jend = ii[i + 1] - ii[i]; 365600e6dbe6SBarry Smith olen = 0; 365700e6dbe6SBarry Smith dlen = 0; 365800e6dbe6SBarry Smith for (j = 0; j < jend; j++) { 365915b2185cSHong Zhang if (cmap[*jj] < rstart || cmap[*jj] >= rend) olen++; 366000e6dbe6SBarry Smith else dlen++; 366100e6dbe6SBarry Smith jj++; 366200e6dbe6SBarry Smith } 366300e6dbe6SBarry Smith olens[i] = olen; 366400e6dbe6SBarry Smith dlens[i] = dlen; 366500e6dbe6SBarry Smith } 3666b6d9b4e0SHong Zhang 36679566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(isrow, &bs)); 36689566063dSJacob Faibussowitsch PetscCall(ISGetBlockSize(iscol, &cbs)); 366998b658c4SHong Zhang 36709566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 36719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, Ncols)); 36729566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 36739566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 36749566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 36759566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3676d5761cdaSHong Zhang 3677d5761cdaSHong Zhang } else { /* call == MAT_REUSE_MATRIX */ 3678a0ff6018SBarry Smith M = *newmat; 36799566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &i, NULL)); 368008401ef6SPierre Jolivet PetscCheck(i == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 36819566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3682c48de900SBarry Smith /* 3683c48de900SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3684c48de900SBarry Smith rather than the slower MatSetValues(). 3685c48de900SBarry Smith */ 3686c48de900SBarry Smith M->was_assembled = PETSC_TRUE; 3687c48de900SBarry Smith M->assembled = PETSC_FALSE; 3688a0ff6018SBarry Smith } 3689548ecf4dSHong Zhang 36903b00a383SHong Zhang /* (5) Set values of Msub to *newmat */ 36919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(count, &colsub)); 36929566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, NULL)); 369398b658c4SHong Zhang 369498b658c4SHong Zhang jj = aij->j; 36959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Msub, (const PetscScalar **)&aa)); 3696a0ff6018SBarry Smith for (i = 0; i < m; i++) { 3697a0ff6018SBarry Smith row = rstart + i; 369800e6dbe6SBarry Smith nz = ii[i + 1] - ii[i]; 369915b2185cSHong Zhang for (j = 0; j < nz; j++) colsub[j] = cmap[jj[j]]; 37009566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, colsub, aa, INSERT_VALUES)); 37019371c9d4SSatish Balay jj += nz; 37029371c9d4SSatish Balay aa += nz; 3703a0ff6018SBarry Smith } 37049566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Msub, (const PetscScalar **)&aa)); 37059566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscmap, &cmap)); 3706a0ff6018SBarry Smith 37079566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 37089566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3709fee21e36SBarry Smith 37109566063dSJacob Faibussowitsch PetscCall(PetscFree(colsub)); 371198b658c4SHong Zhang 371298b658c4SHong Zhang /* save Msub, iscol_sub and iscmap used in processor for next request */ 3713fee21e36SBarry Smith if (call == MAT_INITIAL_MATRIX) { 37143b00a383SHong Zhang *newmat = M; 3715f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubMatrix", (PetscObject)Msub)); 37169566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Msub)); 371798b658c4SHong Zhang 3718f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "SubIScol", (PetscObject)iscol_sub)); 37199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_sub)); 372098b658c4SHong Zhang 3721f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "Subcmap", (PetscObject)iscmap)); 37229566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscmap)); 3723bcae8d28SHong Zhang 3724bcae8d28SHong Zhang if (iscol_local) { 3725f4f49eeaSPierre Jolivet PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 37269566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 3727bcae8d28SHong Zhang } 372898b658c4SHong Zhang } 37293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3730a0ff6018SBarry Smith } 3731273d9f13SBarry Smith 3732df40acb1SHong Zhang /* 3733df40acb1SHong Zhang Not great since it makes two copies of the submatrix, first an SeqAIJ 3734df40acb1SHong Zhang in local and then by concatenating the local matrices the end result. 3735df40acb1SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIAIJ() 3736df40acb1SHong Zhang 373711a5261eSBarry Smith This requires a sequential iscol with all indices. 3738df40acb1SHong Zhang */ 3739d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIAIJ_nonscalable(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 3740d71ae5a4SJacob Faibussowitsch { 3741df40acb1SHong Zhang PetscMPIInt rank, size; 3742df40acb1SHong Zhang PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs, cbs; 3743df40acb1SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 3744df40acb1SHong Zhang Mat M, Mreuse; 374598b658c4SHong Zhang MatScalar *aa, *vwork; 3746df40acb1SHong Zhang MPI_Comm comm; 3747df40acb1SHong Zhang Mat_SeqAIJ *aij; 37480b27a90eSHong Zhang PetscBool colflag, allcolumns = PETSC_FALSE; 3749df40acb1SHong Zhang 3750df40acb1SHong Zhang PetscFunctionBegin; 37519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 37529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 37539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3754df40acb1SHong Zhang 37550b27a90eSHong Zhang /* Check for special case: each processor gets entire matrix columns */ 37569566063dSJacob Faibussowitsch PetscCall(ISIdentity(iscol, &colflag)); 37579566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &n)); 37580b27a90eSHong Zhang if (colflag && n == mat->cmap->N) allcolumns = PETSC_TRUE; 37595440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &allcolumns, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 37600b27a90eSHong Zhang 3761df40acb1SHong Zhang if (call == MAT_REUSE_MATRIX) { 37629566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 376328b400f6SJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 37649566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_REUSE_MATRIX, allcolumns, &Mreuse)); 3765df40acb1SHong Zhang } else { 37669566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIAIJ_SingleIS_Local(mat, 1, &isrow, &iscol, MAT_INITIAL_MATRIX, allcolumns, &Mreuse)); 3767df40acb1SHong Zhang } 3768df40acb1SHong Zhang 3769df40acb1SHong Zhang /* 3770df40acb1SHong Zhang m - number of local rows 3771df40acb1SHong Zhang n - number of columns (same on all processors) 3772df40acb1SHong Zhang rstart - first row in new global matrix generated 3773df40acb1SHong Zhang */ 37749566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 37759566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(Mreuse, &bs, &cbs)); 3776df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 377757508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3778df40acb1SHong Zhang ii = aij->i; 3779df40acb1SHong Zhang jj = aij->j; 3780df40acb1SHong Zhang 3781df40acb1SHong Zhang /* 3782df40acb1SHong Zhang Determine the number of non-zeros in the diagonal and off-diagonal 3783df40acb1SHong Zhang portions of the matrix in order to do correct preallocation 3784df40acb1SHong Zhang */ 3785df40acb1SHong Zhang 3786df40acb1SHong Zhang /* first get start and end of "diagonal" columns */ 3787df40acb1SHong Zhang if (csize == PETSC_DECIDE) { 37889566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 3789df40acb1SHong Zhang if (mglobal == n) { /* square matrix */ 3790df40acb1SHong Zhang nlocal = m; 3791df40acb1SHong Zhang } else { 3792df40acb1SHong Zhang nlocal = n / size + ((n % size) > rank); 3793df40acb1SHong Zhang } 3794df40acb1SHong Zhang } else { 3795df40acb1SHong Zhang nlocal = csize; 3796df40acb1SHong Zhang } 37979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 3798df40acb1SHong Zhang rstart = rend - nlocal; 3799aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 3800df40acb1SHong Zhang 3801df40acb1SHong Zhang /* next, compute all the lengths */ 38029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * m + 1, &dlens)); 3803df40acb1SHong Zhang olens = dlens + m; 3804df40acb1SHong Zhang for (i = 0; i < m; i++) { 3805df40acb1SHong Zhang jend = ii[i + 1] - ii[i]; 3806df40acb1SHong Zhang olen = 0; 3807df40acb1SHong Zhang dlen = 0; 3808df40acb1SHong Zhang for (j = 0; j < jend; j++) { 3809df40acb1SHong Zhang if (*jj < rstart || *jj >= rend) olen++; 3810df40acb1SHong Zhang else dlen++; 3811df40acb1SHong Zhang jj++; 3812df40acb1SHong Zhang } 3813df40acb1SHong Zhang olens[i] = olen; 3814df40acb1SHong Zhang dlens[i] = dlen; 3815df40acb1SHong Zhang } 38169566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 38179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, m, nlocal, PETSC_DECIDE, n)); 38189566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(M, bs, cbs)); 38199566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 38209566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(M, 0, dlens, 0, olens)); 38219566063dSJacob Faibussowitsch PetscCall(PetscFree(dlens)); 3822df40acb1SHong Zhang } else { 3823df40acb1SHong Zhang PetscInt ml, nl; 3824df40acb1SHong Zhang 3825df40acb1SHong Zhang M = *newmat; 38269566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 382708401ef6SPierre Jolivet PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 38289566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 3829df40acb1SHong Zhang /* 3830df40acb1SHong Zhang The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 3831df40acb1SHong Zhang rather than the slower MatSetValues(). 3832df40acb1SHong Zhang */ 3833df40acb1SHong Zhang M->was_assembled = PETSC_TRUE; 3834df40acb1SHong Zhang M->assembled = PETSC_FALSE; 3835df40acb1SHong Zhang } 38369566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 383757508eceSPierre Jolivet aij = (Mat_SeqAIJ *)Mreuse->data; 3838df40acb1SHong Zhang ii = aij->i; 3839df40acb1SHong Zhang jj = aij->j; 38402e5835c6SStefano Zampini 38412e5835c6SStefano Zampini /* trigger copy to CPU if needed */ 38429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Mreuse, (const PetscScalar **)&aa)); 3843df40acb1SHong Zhang for (i = 0; i < m; i++) { 3844df40acb1SHong Zhang row = rstart + i; 3845df40acb1SHong Zhang nz = ii[i + 1] - ii[i]; 38469371c9d4SSatish Balay cwork = jj; 38478e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 38489371c9d4SSatish Balay vwork = aa; 38498e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz); 38509566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 3851df40acb1SHong Zhang } 38529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Mreuse, (const PetscScalar **)&aa)); 3853df40acb1SHong Zhang 38549566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 38559566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 3856df40acb1SHong Zhang *newmat = M; 3857df40acb1SHong Zhang 3858df40acb1SHong Zhang /* save submatrix used in processor for next request */ 3859df40acb1SHong Zhang if (call == MAT_INITIAL_MATRIX) { 38609566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 38619566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Mreuse)); 3862df40acb1SHong Zhang } 38633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3864df40acb1SHong Zhang } 3865df40acb1SHong Zhang 3866ba38deedSJacob Faibussowitsch static PetscErrorCode MatMPIAIJSetPreallocationCSR_MPIAIJ(Mat B, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 3867d71ae5a4SJacob Faibussowitsch { 38686a3d2595SBarry Smith PetscInt m, cstart, cend, j, nnz, i, d, *ld; 38699f0612e4SBarry Smith PetscInt *d_nnz, *o_nnz, nnz_max = 0, rstart, ii, irstart; 3870ccd8e176SBarry Smith const PetscInt *JJ; 3871eeb24464SBarry Smith PetscBool nooffprocentries; 38726a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)B->data; 3873ccd8e176SBarry Smith 3874ccd8e176SBarry Smith PetscFunctionBegin; 38759566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 38769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 3877d0f46423SBarry Smith m = B->rmap->n; 3878d0f46423SBarry Smith cstart = B->cmap->rstart; 3879d0f46423SBarry Smith cend = B->cmap->rend; 3880d0f46423SBarry Smith rstart = B->rmap->rstart; 38819f0612e4SBarry Smith irstart = Ii[0]; 3882899cda47SBarry Smith 38839566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(m, &d_nnz, m, &o_nnz)); 3884ccd8e176SBarry Smith 388576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 38868f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3887ecc77c7aSBarry Smith nnz = Ii[i + 1] - Ii[i]; 38889f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 388908401ef6SPierre Jolivet PetscCheck(nnz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative %" PetscInt_FMT " number of columns", i, nnz); 389008401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[0] < 0), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " starts with negative column index %" PetscInt_FMT, i, JJ[0]); 389108401ef6SPierre Jolivet PetscCheck(!nnz || !(JJ[nnz - 1] >= B->cmap->N), PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Row %" PetscInt_FMT " ends with too large a column index %" PetscInt_FMT " (max allowed %" PetscInt_FMT ")", i, JJ[nnz - 1], B->cmap->N); 3892ecc77c7aSBarry Smith } 389376bd3646SJed Brown } 3894ecc77c7aSBarry Smith 38958f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3896b7940d39SSatish Balay nnz = Ii[i + 1] - Ii[i]; 38979f0612e4SBarry Smith JJ = PetscSafePointerPlusOffset(J, Ii[i] - irstart); 3898ccd8e176SBarry Smith nnz_max = PetscMax(nnz_max, nnz); 3899ccd8e176SBarry Smith d = 0; 39000daa03b5SJed Brown for (j = 0; j < nnz; j++) { 39010daa03b5SJed Brown if (cstart <= JJ[j] && JJ[j] < cend) d++; 3902ccd8e176SBarry Smith } 3903ccd8e176SBarry Smith d_nnz[i] = d; 3904ccd8e176SBarry Smith o_nnz[i] = nnz - d; 3905ccd8e176SBarry Smith } 39069566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, d_nnz, 0, o_nnz)); 39079566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3908ccd8e176SBarry Smith 39098f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 3910ccd8e176SBarry Smith ii = i + rstart; 39119f0612e4SBarry Smith PetscCall(MatSetValues_MPIAIJ(B, 1, &ii, Ii[i + 1] - Ii[i], PetscSafePointerPlusOffset(J, Ii[i] - irstart), PetscSafePointerPlusOffset(v, Ii[i] - irstart), INSERT_VALUES)); 3912ccd8e176SBarry Smith } 3913eeb24464SBarry Smith nooffprocentries = B->nooffprocentries; 3914eeb24464SBarry Smith B->nooffprocentries = PETSC_TRUE; 39159566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 39169566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 3917eeb24464SBarry Smith B->nooffprocentries = nooffprocentries; 3918ccd8e176SBarry Smith 39196a3d2595SBarry Smith /* count number of entries below block diagonal */ 39206a3d2595SBarry Smith PetscCall(PetscFree(Aij->ld)); 39216a3d2595SBarry Smith PetscCall(PetscCalloc1(m, &ld)); 39226a3d2595SBarry Smith Aij->ld = ld; 39236a3d2595SBarry Smith for (i = 0; i < m; i++) { 39246a3d2595SBarry Smith nnz = Ii[i + 1] - Ii[i]; 39256a3d2595SBarry Smith j = 0; 3926ad540459SPierre Jolivet while (j < nnz && J[j] < cstart) j++; 39276a3d2595SBarry Smith ld[i] = j; 3928720a2405SPierre Jolivet if (J) J += nnz; 39296a3d2595SBarry Smith } 39306a3d2595SBarry Smith 39319566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 39323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3933ccd8e176SBarry Smith } 3934ccd8e176SBarry Smith 39351eea217eSSatish Balay /*@ 393611a5261eSBarry Smith MatMPIAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in `MATAIJ` format 3937ccd8e176SBarry Smith (the default parallel PETSc format). 3938ccd8e176SBarry Smith 3939d083f849SBarry Smith Collective 3940ccd8e176SBarry Smith 3941ccd8e176SBarry Smith Input Parameters: 3942a1661176SMatthew Knepley + B - the matrix 3943d8a51d2aSBarry Smith . i - the indices into `j` for the start of each local row (indices start with zero) 3944d8a51d2aSBarry Smith . j - the column indices for each local row (indices start with zero) 3945ccd8e176SBarry Smith - v - optional values in the matrix 3946ccd8e176SBarry Smith 3947ccd8e176SBarry Smith Level: developer 3948ccd8e176SBarry Smith 394912251496SSatish Balay Notes: 39502ef1f0ffSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 39512ef1f0ffSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 395211a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 395312251496SSatish Balay 39542ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 395512251496SSatish Balay 3956a4bd8bc0SBarry Smith A convenience routine for this functionality is `MatCreateMPIAIJWithArrays()`. 3957a4bd8bc0SBarry Smith 3958a4bd8bc0SBarry Smith You can update the matrix with new numerical values using `MatUpdateMPIAIJWithArrays()` after this call if the column indices in `j` are sorted. 3959a4bd8bc0SBarry Smith 3960a4bd8bc0SBarry Smith If you do **not** use `MatUpdateMPIAIJWithArrays()`, the column indices in `j` do not need to be sorted. If you will use 3961a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 3962a4bd8bc0SBarry Smith 396312251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 396412251496SSatish Balay row-major ordering.. i.e for the following matrix, the input data expected is 3965c5e4d11fSDmitry Karpeev as shown 396627430b45SBarry Smith .vb 396727430b45SBarry Smith 1 0 0 396827430b45SBarry Smith 2 0 3 P0 396927430b45SBarry Smith ------- 397027430b45SBarry Smith 4 5 6 P1 397127430b45SBarry Smith 397227430b45SBarry Smith Process0 [P0] rows_owned=[0,1] 397327430b45SBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 397427430b45SBarry Smith j = {0,0,2} [size = 3] 397527430b45SBarry Smith v = {1,2,3} [size = 3] 397627430b45SBarry Smith 397727430b45SBarry Smith Process1 [P1] rows_owned=[2] 397827430b45SBarry Smith i = {0,3} [size = nrow+1 = 1+1] 397927430b45SBarry Smith j = {0,1,2} [size = 3] 398027430b45SBarry Smith v = {4,5,6} [size = 3] 398127430b45SBarry Smith .ve 398212251496SSatish Balay 3983fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatCreateAIJ()`, 3984a4bd8bc0SBarry Smith `MatCreateSeqAIJWithArrays()`, `MatCreateMPIAIJWithSplitArrays()`, `MatCreateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 3985ccd8e176SBarry Smith @*/ 3986d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocationCSR(Mat B, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 3987d71ae5a4SJacob Faibussowitsch { 3988ccd8e176SBarry Smith PetscFunctionBegin; 3989cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocationCSR_C", (Mat, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, i, j, v)); 39903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3991ccd8e176SBarry Smith } 3992ccd8e176SBarry Smith 39935d83a8b1SBarry Smith /*@ 399411a5261eSBarry Smith MatMPIAIJSetPreallocation - Preallocates memory for a sparse parallel matrix in `MATMPIAIJ` format 3995273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 3996273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 399720f4b53cSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 3998273d9f13SBarry Smith 3999d083f849SBarry Smith Collective 4000273d9f13SBarry Smith 4001273d9f13SBarry Smith Input Parameters: 40021c4f3114SJed Brown + B - the matrix 4003273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4004273d9f13SBarry Smith (same value is used for all local rows) 4005273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4006273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 40072ef1f0ffSBarry Smith or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `d_nz` is used to specify the nonzero structure. 4008273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 40093287b5eaSJed Brown For matrices that will be factored, you must leave room for (and set) 40103287b5eaSJed Brown the diagonal entry even if it is zero. 4011273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4012273d9f13SBarry Smith submatrix (same value is used for all local rows). 4013273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4014273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 40152ef1f0ffSBarry Smith each row) or `NULL` (`PETSC_NULL_INTEGER` in Fortran), if `o_nz` is used to specify the nonzero 4016273d9f13SBarry Smith structure. The size of this array is equal to the number 4017273d9f13SBarry Smith of local rows, i.e 'm'. 4018273d9f13SBarry Smith 40192920cce0SJacob Faibussowitsch Example Usage: 402027430b45SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 402127430b45SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 402227430b45SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 402327430b45SBarry Smith as follows 402427430b45SBarry Smith 402527430b45SBarry Smith .vb 402627430b45SBarry Smith 1 2 0 | 0 3 0 | 0 4 402727430b45SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 402827430b45SBarry Smith 9 0 10 | 11 0 0 | 12 0 402927430b45SBarry Smith ------------------------------------- 403027430b45SBarry Smith 13 0 14 | 15 16 17 | 0 0 403127430b45SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 403227430b45SBarry Smith 0 0 0 | 22 23 0 | 24 0 403327430b45SBarry Smith ------------------------------------- 403427430b45SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 403527430b45SBarry Smith 30 0 0 | 31 32 33 | 0 34 403627430b45SBarry Smith .ve 403727430b45SBarry Smith 403827430b45SBarry Smith This can be represented as a collection of submatrices as 403927430b45SBarry Smith .vb 404027430b45SBarry Smith A B C 404127430b45SBarry Smith D E F 404227430b45SBarry Smith G H I 404327430b45SBarry Smith .ve 404427430b45SBarry Smith 404527430b45SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 404627430b45SBarry Smith owned by proc1, G,H,I are owned by proc2. 404727430b45SBarry Smith 404827430b45SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 404927430b45SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 405027430b45SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 405127430b45SBarry Smith 405227430b45SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 405327430b45SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 405427430b45SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 405527430b45SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 405627430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 40575163b989SNuno Nobre matrix, and [DF] as another `MATSEQAIJ` matrix. 405827430b45SBarry Smith 405920f4b53cSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 40605163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 40615163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 40625163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 40635163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 406420f4b53cSBarry Smith In this case, the values of `d_nz`, `o_nz` are 406527430b45SBarry Smith .vb 406627430b45SBarry Smith proc0 dnz = 2, o_nz = 2 406727430b45SBarry Smith proc1 dnz = 3, o_nz = 2 406827430b45SBarry Smith proc2 dnz = 1, o_nz = 4 406927430b45SBarry Smith .ve 407020f4b53cSBarry Smith We are allocating `m`*(`d_nz`+`o_nz`) storage locations for every proc. This 407127430b45SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 407227430b45SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 407327430b45SBarry Smith 34 values. 407427430b45SBarry Smith 407520f4b53cSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 407627430b45SBarry Smith for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 407720f4b53cSBarry Smith In the above case the values for `d_nnz`, `o_nnz` are 407827430b45SBarry Smith .vb 407927430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 408027430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 408127430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 408227430b45SBarry Smith .ve 408327430b45SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 408427430b45SBarry Smith hence pre-allocation is perfect. 408527430b45SBarry Smith 408627430b45SBarry Smith Level: intermediate 408727430b45SBarry Smith 408827430b45SBarry Smith Notes: 408949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 409049a6f317SBarry Smith 409127430b45SBarry Smith The `MATAIJ` format, also called compressed row storage (CSR), is compatible with standard Fortran 40920598bfebSBarry Smith storage. The stored row and column indices begin with zero. 4093651615e1SBarry Smith See [Sparse Matrices](sec_matsparse) for details. 4094273d9f13SBarry Smith 4095273d9f13SBarry Smith The parallel matrix is partitioned such that the first m0 rows belong to 4096273d9f13SBarry Smith process 0, the next m1 rows belong to process 1, the next m2 rows belong 4097273d9f13SBarry Smith to process 2 etc.. where m0,m1,m2... are the input parameter 'm'. 4098273d9f13SBarry Smith 4099273d9f13SBarry Smith The DIAGONAL portion of the local submatrix of a processor can be defined 4100a05b864aSJed Brown as the submatrix which is obtained by extraction the part corresponding to 4101a05b864aSJed Brown the rows r1-r2 and columns c1-c2 of the global matrix, where r1 is the 4102a05b864aSJed Brown first row that belongs to the processor, r2 is the last row belonging to 4103a05b864aSJed Brown the this processor, and c1-c2 is range of indices of the local part of a 4104a05b864aSJed Brown vector suitable for applying the matrix to. This is an mxn matrix. In the 4105a05b864aSJed Brown common case of a square matrix, the row and column ranges are the same and 4106a05b864aSJed Brown the DIAGONAL part is also square. The remaining portion of the local 4107a05b864aSJed Brown submatrix (mxN) constitute the OFF-DIAGONAL portion. 4108273d9f13SBarry Smith 41092ef1f0ffSBarry Smith If `o_nnz` and `d_nnz` are specified, then `o_nz` and `d_nz` are ignored. 4110273d9f13SBarry Smith 411127430b45SBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 4112aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 411327430b45SBarry Smith You can also run with the option `-info` and look for messages with the string 4114aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 4115aa95bbe8SBarry Smith 41161cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrices](sec_matsparse), `MATMPIAIJ`, `MATAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatCreateAIJ()`, `MatMPIAIJSetPreallocationCSR()`, 4117a4bd8bc0SBarry Smith `MatGetInfo()`, `PetscSplitOwnership()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 4118273d9f13SBarry Smith @*/ 4119d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJSetPreallocation(Mat B, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 4120d71ae5a4SJacob Faibussowitsch { 4121273d9f13SBarry Smith PetscFunctionBegin; 41226ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 41236ba663aaSJed Brown PetscValidType(B, 1); 4124cac4c232SBarry Smith PetscTryMethod(B, "MatMPIAIJSetPreallocation_C", (Mat, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, d_nz, d_nnz, o_nz, o_nnz)); 41253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4126273d9f13SBarry Smith } 4127273d9f13SBarry Smith 412858d36128SBarry Smith /*@ 412911a5261eSBarry Smith MatCreateMPIAIJWithArrays - creates a `MATMPIAIJ` matrix using arrays that contain in standard 41308f8f2f0dSBarry Smith CSR format for the local rows. 41312fb0ec9aSBarry Smith 4132d083f849SBarry Smith Collective 41332fb0ec9aSBarry Smith 41342fb0ec9aSBarry Smith Input Parameters: 41352fb0ec9aSBarry Smith + comm - MPI communicator 413611a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 41372fb0ec9aSBarry Smith . n - This value should be the same as the local size used in creating the 4138d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax$. (or `PETSC_DECIDE` to have 4139d8a51d2aSBarry Smith calculated if `N` is given) For square matrices n is almost always `m`. 4140d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 4141d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 41425693b835SJunchao Zhang . i - row indices (of length m+1); that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 41435693b835SJunchao Zhang . j - global column indices 4144f1f2ae84SBarry Smith - a - optional matrix values 41452fb0ec9aSBarry Smith 41462fb0ec9aSBarry Smith Output Parameter: 41472fb0ec9aSBarry Smith . mat - the matrix 414803bfb495SBarry Smith 41492fb0ec9aSBarry Smith Level: intermediate 41502fb0ec9aSBarry Smith 41512fb0ec9aSBarry Smith Notes: 41522ef1f0ffSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 4153d4c8cc39SPierre Jolivet thus you CANNOT change the matrix entries by changing the values of `a[]` after you have 4154d4c8cc39SPierre Jolivet called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 41552fb0ec9aSBarry Smith 41562ef1f0ffSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 415712251496SSatish Balay 41585693b835SJunchao Zhang Once you have created the matrix you can update it with new numerical values using `MatUpdateMPIAIJWithArray()` 4159a4bd8bc0SBarry Smith 41605693b835SJunchao Zhang If you do **not** use `MatUpdateMPIAIJWithArray()`, the column indices in `j` do not need to be sorted. If you will use 4161a4bd8bc0SBarry Smith `MatUpdateMPIAIJWithArrays()`, the column indices **must** be sorted. 4162a4bd8bc0SBarry Smith 416312251496SSatish Balay The format which is used for the sparse matrix input, is equivalent to a 4164d4c8cc39SPierre Jolivet row-major ordering, i.e., for the following matrix, the input data expected is 4165c5e4d11fSDmitry Karpeev as shown 41662ef1f0ffSBarry Smith .vb 41672ef1f0ffSBarry Smith 1 0 0 41682ef1f0ffSBarry Smith 2 0 3 P0 41692ef1f0ffSBarry Smith ------- 41702ef1f0ffSBarry Smith 4 5 6 P1 41718f8f2f0dSBarry Smith 41722ef1f0ffSBarry Smith Process0 [P0] rows_owned=[0,1] 41732ef1f0ffSBarry Smith i = {0,1,3} [size = nrow+1 = 2+1] 41742ef1f0ffSBarry Smith j = {0,0,2} [size = 3] 41752ef1f0ffSBarry Smith v = {1,2,3} [size = 3] 41762fb0ec9aSBarry Smith 41772ef1f0ffSBarry Smith Process1 [P1] rows_owned=[2] 41782ef1f0ffSBarry Smith i = {0,3} [size = nrow+1 = 1+1] 41792ef1f0ffSBarry Smith j = {0,1,2} [size = 3] 41802ef1f0ffSBarry Smith v = {4,5,6} [size = 3] 41812ef1f0ffSBarry Smith .ve 41822ef1f0ffSBarry Smith 4183d4c8cc39SPierre Jolivet .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 41845693b835SJunchao Zhang `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 41852fb0ec9aSBarry Smith @*/ 4186d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 4187d71ae5a4SJacob Faibussowitsch { 41882fb0ec9aSBarry Smith PetscFunctionBegin; 418908401ef6SPierre Jolivet PetscCheck(!i || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 419008401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 41919566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 41929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 41939566063dSJacob Faibussowitsch /* PetscCall(MatSetBlockSizes(M,bs,cbs)); */ 41949566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 41959566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocationCSR(*mat, i, j, a)); 41963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41972fb0ec9aSBarry Smith } 41982fb0ec9aSBarry Smith 41998f8f2f0dSBarry Smith /*@ 420011a5261eSBarry Smith MatUpdateMPIAIJWithArrays - updates a `MATMPIAIJ` matrix using arrays that contain in standard 42012ef1f0ffSBarry Smith CSR format for the local rows. Only the numerical values are updated the other arrays must be identical to what was passed 42022ef1f0ffSBarry Smith from `MatCreateMPIAIJWithArrays()` 42036a3d2595SBarry Smith 42046a3d2595SBarry Smith Deprecated: Use `MatUpdateMPIAIJWithArray()` 42058f8f2f0dSBarry Smith 42068f8f2f0dSBarry Smith Collective 42078f8f2f0dSBarry Smith 42088f8f2f0dSBarry Smith Input Parameters: 42098f8f2f0dSBarry Smith + mat - the matrix 421011a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 42118f8f2f0dSBarry Smith . n - This value should be the same as the local size used in creating the 421211a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 42138f8f2f0dSBarry Smith calculated if N is given) For square matrices n is almost always m. 421411a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 421511a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 42168f8f2f0dSBarry Smith . Ii - row indices; that is Ii[0] = 0, Ii[row] = Ii[row-1] + number of elements in that row of the matrix 42178f8f2f0dSBarry Smith . J - column indices 42188f8f2f0dSBarry Smith - v - matrix values 42198f8f2f0dSBarry Smith 42202ef1f0ffSBarry Smith Level: deprecated 42218f8f2f0dSBarry Smith 42221cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4223a4bd8bc0SBarry Smith `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArray()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42248f8f2f0dSBarry Smith @*/ 4225d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArrays(Mat mat, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt Ii[], const PetscInt J[], const PetscScalar v[]) 4226d71ae5a4SJacob Faibussowitsch { 42276a3d2595SBarry Smith PetscInt nnz, i; 42288f8f2f0dSBarry Smith PetscBool nooffprocentries; 42298f8f2f0dSBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 4230fff043a9SJunchao Zhang Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 4231fff043a9SJunchao Zhang PetscScalar *ad, *ao; 42328f8f2f0dSBarry Smith PetscInt ldi, Iii, md; 42336a3d2595SBarry Smith const PetscInt *Adi = Ad->i; 42346a3d2595SBarry Smith PetscInt *ld = Aij->ld; 42358f8f2f0dSBarry Smith 42368f8f2f0dSBarry Smith PetscFunctionBegin; 4237aed4548fSBarry Smith PetscCheck(Ii[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 423808401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 423908401ef6SPierre Jolivet PetscCheck(m == mat->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of rows cannot change from call to MatUpdateMPIAIJWithArrays()"); 424008401ef6SPierre Jolivet PetscCheck(n == mat->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Local number of columns cannot change from call to MatUpdateMPIAIJWithArrays()"); 42418f8f2f0dSBarry Smith 42429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 42439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 42448f8f2f0dSBarry Smith 42458f8f2f0dSBarry Smith for (i = 0; i < m; i++) { 42464c17f1ccSBarry Smith if (PetscDefined(USE_DEBUG)) { 42474c17f1ccSBarry Smith for (PetscInt j = Ii[i] + 1; j < Ii[i + 1]; ++j) { 42484c17f1ccSBarry Smith PetscCheck(J[j] >= J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is not sorted", j - Ii[i], J[j], i); 42494c17f1ccSBarry Smith PetscCheck(J[j] != J[j - 1], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column entry number %" PetscInt_FMT " (actual column %" PetscInt_FMT ") in row %" PetscInt_FMT " is identical to previous entry", j - Ii[i], J[j], i); 42504c17f1ccSBarry Smith } 42514c17f1ccSBarry Smith } 42528f8f2f0dSBarry Smith nnz = Ii[i + 1] - Ii[i]; 42538f8f2f0dSBarry Smith Iii = Ii[i]; 42548f8f2f0dSBarry Smith ldi = ld[i]; 42558f8f2f0dSBarry Smith md = Adi[i + 1] - Adi[i]; 42569566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 42579566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 42589566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 42598f8f2f0dSBarry Smith ad += md; 42608f8f2f0dSBarry Smith ao += nnz - md; 42618f8f2f0dSBarry Smith } 42628f8f2f0dSBarry Smith nooffprocentries = mat->nooffprocentries; 42638f8f2f0dSBarry Smith mat->nooffprocentries = PETSC_TRUE; 42649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 42659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 42669566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 42679566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 42689566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 42699566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 42709566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 42718f8f2f0dSBarry Smith mat->nooffprocentries = nooffprocentries; 42723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42738f8f2f0dSBarry Smith } 42748f8f2f0dSBarry Smith 42756a3d2595SBarry Smith /*@ 427611a5261eSBarry Smith MatUpdateMPIAIJWithArray - updates an `MATMPIAIJ` matrix using an array that contains the nonzero values 42776a3d2595SBarry Smith 42786a3d2595SBarry Smith Collective 42796a3d2595SBarry Smith 42806a3d2595SBarry Smith Input Parameters: 42816a3d2595SBarry Smith + mat - the matrix 42826a3d2595SBarry Smith - v - matrix values, stored by row 42836a3d2595SBarry Smith 42846a3d2595SBarry Smith Level: intermediate 42856a3d2595SBarry Smith 4286a4bd8bc0SBarry Smith Notes: 42876a3d2595SBarry Smith The matrix must have been obtained with `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` 42886a3d2595SBarry Smith 4289a4bd8bc0SBarry Smith The column indices in the call to `MatCreateMPIAIJWithArrays()` or `MatMPIAIJSetPreallocationCSR()` must have been sorted for this call to work correctly 4290a4bd8bc0SBarry Smith 42911cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4292a4bd8bc0SBarry Smith `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`, `MatUpdateMPIAIJWithArrays()`, `MatSetPreallocationCOO()`, `MatSetValuesCOO()` 42936a3d2595SBarry Smith @*/ 4294d71ae5a4SJacob Faibussowitsch PetscErrorCode MatUpdateMPIAIJWithArray(Mat mat, const PetscScalar v[]) 4295d71ae5a4SJacob Faibussowitsch { 42966a3d2595SBarry Smith PetscInt nnz, i, m; 42976a3d2595SBarry Smith PetscBool nooffprocentries; 42986a3d2595SBarry Smith Mat_MPIAIJ *Aij = (Mat_MPIAIJ *)mat->data; 42996a3d2595SBarry Smith Mat_SeqAIJ *Ad = (Mat_SeqAIJ *)Aij->A->data; 43006a3d2595SBarry Smith Mat_SeqAIJ *Ao = (Mat_SeqAIJ *)Aij->B->data; 43016a3d2595SBarry Smith PetscScalar *ad, *ao; 43026a3d2595SBarry Smith const PetscInt *Adi = Ad->i, *Adj = Ao->i; 43036a3d2595SBarry Smith PetscInt ldi, Iii, md; 43046a3d2595SBarry Smith PetscInt *ld = Aij->ld; 43056a3d2595SBarry Smith 43066a3d2595SBarry Smith PetscFunctionBegin; 43076a3d2595SBarry Smith m = mat->rmap->n; 43086a3d2595SBarry Smith 43096a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->A, &ad)); 43106a3d2595SBarry Smith PetscCall(MatSeqAIJGetArrayWrite(Aij->B, &ao)); 43116a3d2595SBarry Smith Iii = 0; 43126a3d2595SBarry Smith for (i = 0; i < m; i++) { 43136a3d2595SBarry Smith nnz = Adi[i + 1] - Adi[i] + Adj[i + 1] - Adj[i]; 43146a3d2595SBarry Smith ldi = ld[i]; 43156a3d2595SBarry Smith md = Adi[i + 1] - Adi[i]; 43166a3d2595SBarry Smith PetscCall(PetscArraycpy(ad, v + Iii + ldi, md)); 43176a3d2595SBarry Smith ad += md; 4318810441c8SPierre Jolivet if (ao) { 4319810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao, v + Iii, ldi)); 4320810441c8SPierre Jolivet PetscCall(PetscArraycpy(ao + ldi, v + Iii + ldi + md, nnz - ldi - md)); 43216a3d2595SBarry Smith ao += nnz - md; 4322810441c8SPierre Jolivet } 43236a3d2595SBarry Smith Iii += nnz; 43246a3d2595SBarry Smith } 43256a3d2595SBarry Smith nooffprocentries = mat->nooffprocentries; 43266a3d2595SBarry Smith mat->nooffprocentries = PETSC_TRUE; 43276a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->A, &ad)); 43286a3d2595SBarry Smith PetscCall(MatSeqAIJRestoreArrayWrite(Aij->B, &ao)); 43296a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->A)); 43306a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)Aij->B)); 43316a3d2595SBarry Smith PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 43326a3d2595SBarry Smith PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 43336a3d2595SBarry Smith PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 43346a3d2595SBarry Smith mat->nooffprocentries = nooffprocentries; 43353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 43366a3d2595SBarry Smith } 43376a3d2595SBarry Smith 43385d83a8b1SBarry Smith /*@ 433911a5261eSBarry Smith MatCreateAIJ - Creates a sparse parallel matrix in `MATAIJ` format 4340273d9f13SBarry Smith (the default parallel PETSc format). For good matrix assembly performance 4341273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 43422ef1f0ffSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). 4343273d9f13SBarry Smith 4344d083f849SBarry Smith Collective 4345273d9f13SBarry Smith 4346273d9f13SBarry Smith Input Parameters: 4347273d9f13SBarry Smith + comm - MPI communicator 434811a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 4349273d9f13SBarry Smith This value should be the same as the local size used in creating the 4350273d9f13SBarry Smith y vector for the matrix-vector product y = Ax. 4351273d9f13SBarry Smith . n - This value should be the same as the local size used in creating the 435245f401ebSJose E. Roman x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 4353273d9f13SBarry Smith calculated if N is given) For square matrices n is almost always m. 435411a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 435511a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 4356273d9f13SBarry Smith . d_nz - number of nonzeros per row in DIAGONAL portion of local submatrix 4357273d9f13SBarry Smith (same value is used for all local rows) 4358273d9f13SBarry Smith . d_nnz - array containing the number of nonzeros in the various rows of the 4359273d9f13SBarry Smith DIAGONAL portion of the local submatrix (possibly different for each row) 43602ef1f0ffSBarry Smith or `NULL`, if `d_nz` is used to specify the nonzero structure. 4361273d9f13SBarry Smith The size of this array is equal to the number of local rows, i.e 'm'. 4362273d9f13SBarry Smith . o_nz - number of nonzeros per row in the OFF-DIAGONAL portion of local 4363273d9f13SBarry Smith submatrix (same value is used for all local rows). 4364273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various rows of the 4365273d9f13SBarry Smith OFF-DIAGONAL portion of the local submatrix (possibly different for 43662ef1f0ffSBarry Smith each row) or `NULL`, if `o_nz` is used to specify the nonzero 4367273d9f13SBarry Smith structure. The size of this array is equal to the number 4368273d9f13SBarry Smith of local rows, i.e 'm'. 4369273d9f13SBarry Smith 4370273d9f13SBarry Smith Output Parameter: 4371273d9f13SBarry Smith . A - the matrix 4372273d9f13SBarry Smith 437327430b45SBarry Smith Options Database Keys: 437427430b45SBarry Smith + -mat_no_inode - Do not use inodes 437527430b45SBarry Smith . -mat_inode_limit <limit> - Sets inode limit (max limit=5) 437627430b45SBarry Smith - -matmult_vecscatter_view <viewer> - View the vecscatter (i.e., communication pattern) used in `MatMult()` of sparse parallel matrices. 4377727bdf9bSBarry Smith See viewer types in manual of `MatView()`. Of them, ascii_matlab, draw or binary cause the `VecScatter` 4378727bdf9bSBarry Smith to be viewed as a matrix. Entry (i,j) is the size of message (in bytes) rank i sends to rank j in one `MatMult()` call. 437927430b45SBarry Smith 43802ef1f0ffSBarry Smith Level: intermediate 43812ef1f0ffSBarry Smith 438227430b45SBarry Smith Notes: 438377433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 4384f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 438511a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 4386175b88e8SBarry Smith 438749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 438849a6f317SBarry Smith 43892ef1f0ffSBarry Smith The `m`,`n`,`M`,`N` parameters specify the size of the matrix, and its partitioning across 43902ef1f0ffSBarry Smith processors, while `d_nz`,`d_nnz`,`o_nz`,`o_nnz` parameters specify the approximate 4391273d9f13SBarry Smith storage requirements for this matrix. 4392273d9f13SBarry Smith 439311a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one 4394273d9f13SBarry Smith processor than it must be used on all processors that share the object for 4395273d9f13SBarry Smith that argument. 4396273d9f13SBarry Smith 4397727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 4398727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 4399727bdf9bSBarry Smith 4400273d9f13SBarry Smith The user MUST specify either the local or global matrix dimensions 4401273d9f13SBarry Smith (possibly both). 4402273d9f13SBarry Smith 440333a7c187SSatish Balay The parallel matrix is partitioned across processors such that the 4404727bdf9bSBarry Smith first `m0` rows belong to process 0, the next `m1` rows belong to 4405727bdf9bSBarry Smith process 1, the next `m2` rows belong to process 2, etc., where 4406727bdf9bSBarry Smith `m0`, `m1`, `m2`... are the input parameter `m` on each MPI process. I.e., each MPI process stores 440733a7c187SSatish Balay values corresponding to [m x N] submatrix. 4408273d9f13SBarry Smith 440933a7c187SSatish Balay The columns are logically partitioned with the n0 columns belonging 441033a7c187SSatish Balay to 0th partition, the next n1 columns belonging to the next 4411df3898eeSBarry Smith partition etc.. where n0,n1,n2... are the input parameter 'n'. 441233a7c187SSatish Balay 441333a7c187SSatish Balay The DIAGONAL portion of the local submatrix on any given processor 441433a7c187SSatish Balay is the submatrix corresponding to the rows and columns m,n 441533a7c187SSatish Balay corresponding to the given processor. i.e diagonal matrix on 441633a7c187SSatish Balay process 0 is [m0 x n0], diagonal matrix on process 1 is [m1 x n1] 441733a7c187SSatish Balay etc. The remaining portion of the local submatrix [m x (N-n)] 441833a7c187SSatish Balay constitute the OFF-DIAGONAL portion. The example below better 44190b4b7b1cSBarry Smith illustrates this concept. The two matrices, the DIAGONAL portion and 44200b4b7b1cSBarry Smith the OFF-DIAGONAL portion are each stored as `MATSEQAIJ` matrices. 442133a7c187SSatish Balay 442233a7c187SSatish Balay For a square global matrix we define each processor's diagonal portion 442333a7c187SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 442433a7c187SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 442533a7c187SSatish Balay local matrix (a rectangular submatrix). 4426273d9f13SBarry Smith 44272ef1f0ffSBarry Smith If `o_nnz`, `d_nnz` are specified, then `o_nz`, and `d_nz` are ignored. 4428273d9f13SBarry Smith 442997d05335SKris Buschelman When calling this routine with a single process communicator, a matrix of 44302ef1f0ffSBarry Smith type `MATSEQAIJ` is returned. If a matrix of type `MATMPIAIJ` is desired for this 4431da57b5cdSKarl Rupp type of communicator, use the construction mechanism 4432da57b5cdSKarl Rupp .vb 44332ef1f0ffSBarry Smith MatCreate(..., &A); 44342ef1f0ffSBarry Smith MatSetType(A, MATMPIAIJ); 44352ef1f0ffSBarry Smith MatSetSizes(A, m, n, M, N); 44362ef1f0ffSBarry Smith MatMPIAIJSetPreallocation(A, ...); 4437da57b5cdSKarl Rupp .ve 443897d05335SKris Buschelman 4439273d9f13SBarry Smith By default, this format uses inodes (identical nodes) when possible. 4440273d9f13SBarry Smith We search for consecutive rows with the same nonzero structure, thereby 4441273d9f13SBarry Smith reusing matrix information to achieve increased efficiency. 4442273d9f13SBarry Smith 44432920cce0SJacob Faibussowitsch Example Usage: 4444273d9f13SBarry Smith Consider the following 8x8 matrix with 34 non-zero values, that is 4445273d9f13SBarry Smith assembled across 3 processors. Lets assume that proc0 owns 3 rows, 4446273d9f13SBarry Smith proc1 owns 3 rows, proc2 owns 2 rows. This division can be shown 4447efc377ccSKarl Rupp as follows 4448273d9f13SBarry Smith 4449273d9f13SBarry Smith .vb 4450273d9f13SBarry Smith 1 2 0 | 0 3 0 | 0 4 4451273d9f13SBarry Smith Proc0 0 5 6 | 7 0 0 | 8 0 4452273d9f13SBarry Smith 9 0 10 | 11 0 0 | 12 0 4453273d9f13SBarry Smith ------------------------------------- 4454273d9f13SBarry Smith 13 0 14 | 15 16 17 | 0 0 4455273d9f13SBarry Smith Proc1 0 18 0 | 19 20 21 | 0 0 4456273d9f13SBarry Smith 0 0 0 | 22 23 0 | 24 0 4457273d9f13SBarry Smith ------------------------------------- 4458273d9f13SBarry Smith Proc2 25 26 27 | 0 0 28 | 29 0 4459273d9f13SBarry Smith 30 0 0 | 31 32 33 | 0 34 4460273d9f13SBarry Smith .ve 4461273d9f13SBarry Smith 4462da57b5cdSKarl Rupp This can be represented as a collection of submatrices as 4463273d9f13SBarry Smith 4464273d9f13SBarry Smith .vb 4465273d9f13SBarry Smith A B C 4466273d9f13SBarry Smith D E F 4467273d9f13SBarry Smith G H I 4468273d9f13SBarry Smith .ve 4469273d9f13SBarry Smith 4470273d9f13SBarry Smith Where the submatrices A,B,C are owned by proc0, D,E,F are 4471273d9f13SBarry Smith owned by proc1, G,H,I are owned by proc2. 4472273d9f13SBarry Smith 4473273d9f13SBarry Smith The 'm' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4474273d9f13SBarry Smith The 'n' parameters for proc0,proc1,proc2 are 3,3,2 respectively. 4475273d9f13SBarry Smith The 'M','N' parameters are 8,8, and have the same values on all procs. 4476273d9f13SBarry Smith 4477273d9f13SBarry Smith The DIAGONAL submatrices corresponding to proc0,proc1,proc2 are 4478273d9f13SBarry Smith submatrices [A], [E], [I] respectively. The OFF-DIAGONAL submatrices 4479273d9f13SBarry Smith corresponding to proc0,proc1,proc2 are [BC], [DF], [GH] respectively. 4480273d9f13SBarry Smith Internally, each processor stores the DIAGONAL part, and the OFF-DIAGONAL 448127430b45SBarry Smith part as `MATSEQAIJ` matrices. For example, proc1 will store [E] as a `MATSEQAIJ` 44825163b989SNuno Nobre matrix, and [DF] as another SeqAIJ matrix. 4483273d9f13SBarry Smith 44842ef1f0ffSBarry Smith When `d_nz`, `o_nz` parameters are specified, `d_nz` storage elements are 44855163b989SNuno Nobre allocated for every row of the local DIAGONAL submatrix, and `o_nz` 44865163b989SNuno Nobre storage locations are allocated for every row of the OFF-DIAGONAL submatrix. 44875163b989SNuno Nobre One way to choose `d_nz` and `o_nz` is to use the maximum number of nonzeros over 44885163b989SNuno Nobre the local rows for each of the local DIAGONAL, and the OFF-DIAGONAL submatrices. 44892ef1f0ffSBarry Smith In this case, the values of `d_nz`,`o_nz` are 4490273d9f13SBarry Smith .vb 449127430b45SBarry Smith proc0 dnz = 2, o_nz = 2 449227430b45SBarry Smith proc1 dnz = 3, o_nz = 2 449327430b45SBarry Smith proc2 dnz = 1, o_nz = 4 4494273d9f13SBarry Smith .ve 44952ef1f0ffSBarry Smith We are allocating m*(`d_nz`+`o_nz`) storage locations for every proc. This 4496273d9f13SBarry Smith translates to 3*(2+2)=12 for proc0, 3*(3+2)=15 for proc1, 2*(1+4)=10 4497273d9f13SBarry Smith for proc3. i.e we are using 12+15+10=37 storage locations to store 4498273d9f13SBarry Smith 34 values. 4499273d9f13SBarry Smith 45002ef1f0ffSBarry Smith When `d_nnz`, `o_nnz` parameters are specified, the storage is specified 4501a5b23f4aSJose E. Roman for every row, corresponding to both DIAGONAL and OFF-DIAGONAL submatrices. 4502da57b5cdSKarl Rupp In the above case the values for d_nnz,o_nnz are 4503273d9f13SBarry Smith .vb 450427430b45SBarry Smith proc0 d_nnz = [2,2,2] and o_nnz = [2,2,2] 450527430b45SBarry Smith proc1 d_nnz = [3,3,2] and o_nnz = [2,1,1] 450627430b45SBarry Smith proc2 d_nnz = [1,1] and o_nnz = [4,4] 4507273d9f13SBarry Smith .ve 4508273d9f13SBarry Smith Here the space allocated is sum of all the above values i.e 34, and 4509273d9f13SBarry Smith hence pre-allocation is perfect. 4510273d9f13SBarry Smith 45111cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, [Sparse Matrix Creation](sec_matsparse), `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 4512727bdf9bSBarry Smith `MATMPIAIJ`, `MatCreateMPIAIJWithArrays()`, `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, 4513727bdf9bSBarry Smith `MatGetOwnershipRangesColumn()`, `PetscLayout` 4514273d9f13SBarry Smith @*/ 4515d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateAIJ(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 4516d71ae5a4SJacob Faibussowitsch { 4517b1d57f15SBarry Smith PetscMPIInt size; 4518273d9f13SBarry Smith 4519273d9f13SBarry Smith PetscFunctionBegin; 45209566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 45219566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 45229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 4523273d9f13SBarry Smith if (size > 1) { 45249566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIAIJ)); 45259566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*A, d_nz, d_nnz, o_nz, o_nnz)); 4526273d9f13SBarry Smith } else { 45279566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJ)); 45289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*A, d_nz, d_nnz)); 4529273d9f13SBarry Smith } 45303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4531273d9f13SBarry Smith } 4532195d93cdSBarry Smith 4533127ca0efSMatthew Knepley /*@C 45340ab4885dSBarry Smith MatMPIAIJGetSeqAIJ - Returns the local pieces of this distributed matrix 4535127ca0efSMatthew Knepley 45362ef1f0ffSBarry Smith Not Collective 4537127ca0efSMatthew Knepley 4538127ca0efSMatthew Knepley Input Parameter: 453911a5261eSBarry Smith . A - The `MATMPIAIJ` matrix 4540127ca0efSMatthew Knepley 4541127ca0efSMatthew Knepley Output Parameters: 454211a5261eSBarry Smith + Ad - The local diagonal block as a `MATSEQAIJ` matrix 454311a5261eSBarry Smith . Ao - The local off-diagonal block as a `MATSEQAIJ` matrix 45442ef1f0ffSBarry Smith - colmap - An array mapping local column numbers of `Ao` to global column numbers of the parallel matrix 4545127ca0efSMatthew Knepley 45460ab4885dSBarry Smith Level: intermediate 45470ab4885dSBarry Smith 454811a5261eSBarry Smith Note: 45492ef1f0ffSBarry Smith The rows in `Ad` and `Ao` are in [0, Nr), where Nr is the number of local rows on this process. The columns 45502ef1f0ffSBarry Smith in `Ad` are in [0, Nc) where Nc is the number of local columns. The columns are `Ao` are in [0, Nco), where Nco is 45512ef1f0ffSBarry Smith the number of nonzero columns in the local off-diagonal piece of the matrix `A`. The array colmap maps these 4552127ca0efSMatthew Knepley local column numbers to global column numbers in the original matrix. 4553127ca0efSMatthew Knepley 4554ce78bad3SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()`, `MatCreateAIJ()`, `MATSEQAIJ` 4555127ca0efSMatthew Knepley @*/ 4556d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetSeqAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 4557d71ae5a4SJacob Faibussowitsch { 4558195d93cdSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 455904cf37c7SBarry Smith PetscBool flg; 4560b1d57f15SBarry Smith 4561195d93cdSBarry Smith PetscFunctionBegin; 45629566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &flg)); 456328b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIAIJ matrix as input"); 456421e72a00SBarry Smith if (Ad) *Ad = a->A; 456521e72a00SBarry Smith if (Ao) *Ao = a->B; 456621e72a00SBarry Smith if (colmap) *colmap = a->garray; 45673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4568195d93cdSBarry Smith } 4569a2243be0SBarry Smith 4570d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 4571d71ae5a4SJacob Faibussowitsch { 4572110bb6e1SHong Zhang PetscInt m, N, i, rstart, nnz, Ii; 45739b8102ccSHong Zhang PetscInt *indx; 4574110bb6e1SHong Zhang PetscScalar *values; 4575421ddf4dSJunchao Zhang MatType rootType; 45769b8102ccSHong Zhang 45779b8102ccSHong Zhang PetscFunctionBegin; 45789566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 4579110bb6e1SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4580110bb6e1SHong Zhang PetscInt *dnz, *onz, sum, bs, cbs; 4581110bb6e1SHong Zhang 458248a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 4583a22543b6SHong Zhang /* Check sum(n) = N */ 4584462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 458508401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 4586a22543b6SHong Zhang 45879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&m, &rstart, 1, MPIU_INT, MPI_SUM, comm)); 45889b8102ccSHong Zhang rstart -= m; 45899b8102ccSHong Zhang 4590d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 45919b8102ccSHong Zhang for (i = 0; i < m; i++) { 45929566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 45939566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, indx, dnz, onz)); 45949566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, NULL)); 45959b8102ccSHong Zhang } 45969b8102ccSHong Zhang 45979566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 45989566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 45999566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 46009566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 46019566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(inmat, &rootType)); 46029566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, rootType)); 46039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*outmat, 0, dnz)); 46049566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(*outmat, 0, dnz, 0, onz)); 4605d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 46069566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 46079b8102ccSHong Zhang } 46089b8102ccSHong Zhang 4609110bb6e1SHong Zhang /* numeric phase */ 46109566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 46119b8102ccSHong Zhang for (i = 0; i < m; i++) { 46129566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46139b8102ccSHong Zhang Ii = i + rstart; 46149566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 46159566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqAIJ(inmat, i, &nnz, &indx, &values)); 46169b8102ccSHong Zhang } 46179566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 46189566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 46193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4620c5d6d63eSBarry Smith } 4621c5d6d63eSBarry Smith 46222a8381b2SBarry Smith static PetscErrorCode MatMergeSeqsToMPIDestroy(PetscCtxRt data) 4623d71ae5a4SJacob Faibussowitsch { 46242a8381b2SBarry Smith MatMergeSeqsToMPI *merge = *(MatMergeSeqsToMPI **)data; 462551a7d1a8SHong Zhang 462651a7d1a8SHong Zhang PetscFunctionBegin; 46273ba16761SJacob Faibussowitsch if (!merge) PetscFunctionReturn(PETSC_SUCCESS); 46289566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->id_r)); 46299566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_s)); 46309566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->len_r)); 46319566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bi)); 46329566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->bj)); 46339566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri[0])); 46349566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_ri)); 46359566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj[0])); 46369566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->buf_rj)); 46379566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coi)); 46389566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->coj)); 46399566063dSJacob Faibussowitsch PetscCall(PetscFree(merge->owners_co)); 46409566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&merge->rowmap)); 46419566063dSJacob Faibussowitsch PetscCall(PetscFree(merge)); 46423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 464351a7d1a8SHong Zhang } 464451a7d1a8SHong Zhang 4645c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 4646c6db04a5SJed Brown #include <petscbt.h> 46474ebed01fSBarry Smith 4648d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJNumeric(Mat seqmat, Mat mpimat) 4649d71ae5a4SJacob Faibussowitsch { 4650ce94432eSBarry Smith MPI_Comm comm; 465155d1abb9SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4652b1d57f15SBarry Smith PetscMPIInt size, rank, taga, *len_s; 46536497c311SBarry Smith PetscInt N = mpimat->cmap->N, i, j, *owners, *ai = a->i, *aj, m; 46546497c311SBarry Smith PetscMPIInt proc, k; 4655b1d57f15SBarry Smith PetscInt **buf_ri, **buf_rj; 46566497c311SBarry Smith PetscInt anzi, *bj_i, *bi, *bj, arow, bnzi, nextaj; 4657b1d57f15SBarry Smith PetscInt nrows, **buf_ri_k, **nextrow, **nextai; 465855d1abb9SHong Zhang MPI_Request *s_waits, *r_waits; 465955d1abb9SHong Zhang MPI_Status *status; 4660fff043a9SJunchao Zhang const MatScalar *aa, *a_a; 4661dd6ea824SBarry Smith MatScalar **abuf_r, *ba_i; 4662cc1eb50dSBarry Smith MatMergeSeqsToMPI *merge; 4663776b82aeSLisandro Dalcin PetscContainer container; 466455d1abb9SHong Zhang 466555d1abb9SHong Zhang PetscFunctionBegin; 46669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mpimat, &comm)); 46679566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompinum, seqmat, 0, 0, 0)); 46683c2c1871SHong Zhang 46699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 46709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 467155d1abb9SHong Zhang 46729566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)mpimat, "MatMergeSeqsToMPI", (PetscObject *)&container)); 467328b400f6SJacob Faibussowitsch PetscCheck(container, PetscObjectComm((PetscObject)mpimat), PETSC_ERR_PLIB, "Mat not created from MatCreateMPIAIJSumSeqAIJSymbolic"); 46742a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(container, &merge)); 46759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(seqmat, &a_a)); 4676fff043a9SJunchao Zhang aa = a_a; 4677bf0cc555SLisandro Dalcin 467855d1abb9SHong Zhang bi = merge->bi; 467955d1abb9SHong Zhang bj = merge->bj; 468055d1abb9SHong Zhang buf_ri = merge->buf_ri; 468155d1abb9SHong Zhang buf_rj = merge->buf_rj; 468255d1abb9SHong Zhang 46839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 46847a2fc3feSBarry Smith owners = merge->rowmap->range; 468555d1abb9SHong Zhang len_s = merge->len_s; 468655d1abb9SHong Zhang 468755d1abb9SHong Zhang /* send and recv matrix values */ 46889566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)mpimat, &taga)); 46899566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 469055d1abb9SHong Zhang 46919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &s_waits)); 469255d1abb9SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 469355d1abb9SHong Zhang if (!len_s[proc]) continue; 469455d1abb9SHong Zhang i = owners[proc]; 46956497c311SBarry Smith PetscCallMPI(MPIU_Isend(aa + ai[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 469655d1abb9SHong Zhang k++; 469755d1abb9SHong Zhang } 469855d1abb9SHong Zhang 46999566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 47009566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 47019566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 470255d1abb9SHong Zhang 47039566063dSJacob Faibussowitsch PetscCall(PetscFree(s_waits)); 47049566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 470555d1abb9SHong Zhang 470655d1abb9SHong Zhang /* insert mat values of mpimat */ 47079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &ba_i)); 47089566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 470955d1abb9SHong Zhang 471055d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { 471155d1abb9SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 4712f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 471355d1abb9SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4714a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 471555d1abb9SHong Zhang } 471655d1abb9SHong Zhang 471755d1abb9SHong Zhang /* set values of ba */ 47187a2fc3feSBarry Smith m = merge->rowmap->n; 471955d1abb9SHong Zhang for (i = 0; i < m; i++) { 472055d1abb9SHong Zhang arow = owners[rank] + i; 472155d1abb9SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of mpimat */ 472255d1abb9SHong Zhang bnzi = bi[i + 1] - bi[i]; 47239566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ba_i, bnzi)); 472455d1abb9SHong Zhang 472555d1abb9SHong Zhang /* add local non-zero vals of this proc's seqmat into ba */ 472655d1abb9SHong Zhang anzi = ai[arow + 1] - ai[arow]; 472755d1abb9SHong Zhang aj = a->j + ai[arow]; 4728fff043a9SJunchao Zhang aa = a_a + ai[arow]; 472955d1abb9SHong Zhang nextaj = 0; 473055d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 473155d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 473255d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 473355d1abb9SHong Zhang } 473455d1abb9SHong Zhang } 473555d1abb9SHong Zhang 473655d1abb9SHong Zhang /* add received vals into ba */ 473755d1abb9SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 473855d1abb9SHong Zhang /* i-th row */ 473955d1abb9SHong Zhang if (i == *nextrow[k]) { 474055d1abb9SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 4741f4f49eeaSPierre Jolivet aj = buf_rj[k] + *nextai[k]; 4742f4f49eeaSPierre Jolivet aa = abuf_r[k] + *nextai[k]; 474355d1abb9SHong Zhang nextaj = 0; 474455d1abb9SHong Zhang for (j = 0; nextaj < anzi; j++) { 474555d1abb9SHong Zhang if (*(bj_i + j) == aj[nextaj]) { /* bcol == acol */ 474655d1abb9SHong Zhang ba_i[j] += aa[nextaj++]; 474755d1abb9SHong Zhang } 474855d1abb9SHong Zhang } 47499371c9d4SSatish Balay nextrow[k]++; 47509371c9d4SSatish Balay nextai[k]++; 475155d1abb9SHong Zhang } 475255d1abb9SHong Zhang } 47539566063dSJacob Faibussowitsch PetscCall(MatSetValues(mpimat, 1, &arow, bnzi, bj_i, ba_i, INSERT_VALUES)); 475455d1abb9SHong Zhang } 47559566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(seqmat, &a_a)); 47569566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mpimat, MAT_FINAL_ASSEMBLY)); 47579566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mpimat, MAT_FINAL_ASSEMBLY)); 475855d1abb9SHong Zhang 47599566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 47609566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 47619566063dSJacob Faibussowitsch PetscCall(PetscFree(ba_i)); 47629566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 47639566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompinum, seqmat, 0, 0, 0)); 47643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 476555d1abb9SHong Zhang } 476638f152feSBarry Smith 4767d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJSymbolic(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, Mat *mpimat) 4768d71ae5a4SJacob Faibussowitsch { 476955a3bba9SHong Zhang Mat B_mpi; 4770c2234fe3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)seqmat->data; 4771b1d57f15SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_s, *len_si, *len_ri; 4772b1d57f15SBarry Smith PetscInt **buf_rj, **buf_ri, **buf_ri_k; 4773d0f46423SBarry Smith PetscInt M = seqmat->rmap->n, N = seqmat->cmap->n, i, *owners, *ai = a->i, *aj = a->j; 47746497c311SBarry Smith PetscInt len, *dnz, *onz, bs, cbs; 4775c599c493SJunchao Zhang PetscInt k, anzi, *bi, *bj, *lnk, nlnk, arow, bnzi; 4776b1d57f15SBarry Smith PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextai; 477755d1abb9SHong Zhang MPI_Request *si_waits, *sj_waits, *ri_waits, *rj_waits; 477858cb9c82SHong Zhang MPI_Status *status; 47790298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 4780be0fcf8dSHong Zhang PetscBT lnkbt; 4781cc1eb50dSBarry Smith MatMergeSeqsToMPI *merge; 4782776b82aeSLisandro Dalcin PetscContainer container; 478302c68681SHong Zhang 4784e5f2cdd8SHong Zhang PetscFunctionBegin; 47859566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompisym, seqmat, 0, 0, 0)); 47863c2c1871SHong Zhang 478738f152feSBarry Smith /* make sure it is a PETSc comm */ 47889566063dSJacob Faibussowitsch PetscCall(PetscCommDuplicate(comm, &comm, NULL)); 47899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 47909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 479155d1abb9SHong Zhang 47929566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 47939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &status)); 4794e5f2cdd8SHong Zhang 47956abd8857SHong Zhang /* determine row ownership */ 47969566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 47979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(merge->rowmap, m)); 47989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(merge->rowmap, M)); 47999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(merge->rowmap, 1)); 48009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 48019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &len_si)); 48029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &merge->len_s)); 480355d1abb9SHong Zhang 48047a2fc3feSBarry Smith m = merge->rowmap->n; 48057a2fc3feSBarry Smith owners = merge->rowmap->range; 48066abd8857SHong Zhang 48076abd8857SHong Zhang /* determine the number of messages to send, their lengths */ 48083e06a4e6SHong Zhang len_s = merge->len_s; 480951a7d1a8SHong Zhang 48102257cef7SHong Zhang len = 0; /* length of buf_si[] */ 4811c2234fe3SHong Zhang merge->nsend = 0; 48126497c311SBarry Smith for (PetscMPIInt proc = 0; proc < size; proc++) { 48132257cef7SHong Zhang len_si[proc] = 0; 48143e06a4e6SHong Zhang if (proc == rank) { 48156abd8857SHong Zhang len_s[proc] = 0; 48163e06a4e6SHong Zhang } else { 48176497c311SBarry Smith PetscCall(PetscMPIIntCast(owners[proc + 1] - owners[proc] + 1, &len_si[proc])); 48186497c311SBarry Smith PetscCall(PetscMPIIntCast(ai[owners[proc + 1]] - ai[owners[proc]], &len_s[proc])); /* num of rows to be sent to [proc] */ 48193e06a4e6SHong Zhang } 48203e06a4e6SHong Zhang if (len_s[proc]) { 4821c2234fe3SHong Zhang merge->nsend++; 48222257cef7SHong Zhang nrows = 0; 48232257cef7SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48242257cef7SHong Zhang if (ai[i + 1] > ai[i]) nrows++; 48252257cef7SHong Zhang } 48266497c311SBarry Smith PetscCall(PetscMPIIntCast(2 * (nrows + 1), &len_si[proc])); 48272257cef7SHong Zhang len += len_si[proc]; 4828409913e3SHong Zhang } 482958cb9c82SHong Zhang } 4830409913e3SHong Zhang 48312257cef7SHong Zhang /* determine the number and length of messages to receive for ij-structure */ 48329566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 48339566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 4834671beff6SHong Zhang 48353e06a4e6SHong Zhang /* post the Irecv of j-structure */ 48369566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 48379566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rj_waits)); 483802c68681SHong Zhang 48393e06a4e6SHong Zhang /* post the Isend of j-structure */ 48409566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend, &si_waits, merge->nsend, &sj_waits)); 48413e06a4e6SHong Zhang 48426497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 4843409913e3SHong Zhang if (!len_s[proc]) continue; 484402c68681SHong Zhang i = owners[proc]; 48456497c311SBarry Smith PetscCallMPI(MPIU_Isend(aj + ai[i], len_s[proc], MPIU_INT, proc, tagj, comm, sj_waits + k)); 484651a7d1a8SHong Zhang k++; 484751a7d1a8SHong Zhang } 484851a7d1a8SHong Zhang 48493e06a4e6SHong Zhang /* receives and sends of j-structure are complete */ 48509566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, rj_waits, status)); 48519566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, sj_waits, status)); 485202c68681SHong Zhang 485302c68681SHong Zhang /* send and recv i-structure */ 48549566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 48559566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &ri_waits)); 485602c68681SHong Zhang 48579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 48583e06a4e6SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 48596497c311SBarry Smith for (PetscMPIInt proc = 0, k = 0; proc < size; proc++) { 486002c68681SHong Zhang if (!len_s[proc]) continue; 48613e06a4e6SHong Zhang /* form outgoing message for i-structure: 48623e06a4e6SHong Zhang buf_si[0]: nrows to be sent 48633e06a4e6SHong Zhang [1:nrows]: row index (global) 48643e06a4e6SHong Zhang [nrows+1:2*nrows+1]: i-structure index 48653e06a4e6SHong Zhang */ 48662257cef7SHong Zhang nrows = len_si[proc] / 2 - 1; 48673e06a4e6SHong Zhang buf_si_i = buf_si + nrows + 1; 48683e06a4e6SHong Zhang buf_si[0] = nrows; 48693e06a4e6SHong Zhang buf_si_i[0] = 0; 48703e06a4e6SHong Zhang nrows = 0; 48713e06a4e6SHong Zhang for (i = owners[proc]; i < owners[proc + 1]; i++) { 48723e06a4e6SHong Zhang anzi = ai[i + 1] - ai[i]; 48733e06a4e6SHong Zhang if (anzi) { 48743e06a4e6SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + anzi; /* i-structure */ 48753e06a4e6SHong Zhang buf_si[nrows + 1] = i - owners[proc]; /* local row index */ 48763e06a4e6SHong Zhang nrows++; 48773e06a4e6SHong Zhang } 48783e06a4e6SHong Zhang } 48796497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, si_waits + k)); 488002c68681SHong Zhang k++; 48812257cef7SHong Zhang buf_si += len_si[proc]; 488202c68681SHong Zhang } 48832257cef7SHong Zhang 48849566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, ri_waits, status)); 48859566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, si_waits, status)); 488602c68681SHong Zhang 48879566063dSJacob Faibussowitsch PetscCall(PetscInfo(seqmat, "nsend: %d, nrecv: %d\n", merge->nsend, merge->nrecv)); 488848a46eb9SPierre Jolivet for (i = 0; i < merge->nrecv; i++) PetscCall(PetscInfo(seqmat, "recv len_ri=%d, len_rj=%d from [%d]\n", len_ri[i], merge->len_r[i], merge->id_r[i])); 48893e06a4e6SHong Zhang 48909566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 48919566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 48929566063dSJacob Faibussowitsch PetscCall(PetscFree(rj_waits)); 48939566063dSJacob Faibussowitsch PetscCall(PetscFree2(si_waits, sj_waits)); 48949566063dSJacob Faibussowitsch PetscCall(PetscFree(ri_waits)); 48959566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 48969566063dSJacob Faibussowitsch PetscCall(PetscFree(status)); 489758cb9c82SHong Zhang 4898bcc1bcd5SHong Zhang /* compute a local seq matrix in each processor */ 489958cb9c82SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 49009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &bi)); 490158cb9c82SHong Zhang bi[0] = 0; 490258cb9c82SHong Zhang 4903be0fcf8dSHong Zhang /* create and initialize a linked list */ 4904be0fcf8dSHong Zhang nlnk = N + 1; 49059566063dSJacob Faibussowitsch PetscCall(PetscLLCreate(N, N, nlnk, lnk, lnkbt)); 490658cb9c82SHong Zhang 4907bcc1bcd5SHong Zhang /* initial FreeSpace size is 2*(num of local nnz(seqmat)) */ 4908bcc1bcd5SHong Zhang len = ai[owners[rank + 1]] - ai[owners[rank]]; 49099566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntMultTruncate(2, len) + 1, &free_space)); 49102205254eSKarl Rupp 491158cb9c82SHong Zhang current_space = free_space; 491258cb9c82SHong Zhang 4913bcc1bcd5SHong Zhang /* determine symbolic info for each local row */ 49149566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextai)); 49151d79065fSBarry Smith 49163e06a4e6SHong Zhang for (k = 0; k < merge->nrecv; k++) { 49172257cef7SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 49183e06a4e6SHong Zhang nrows = *buf_ri_k[k]; 49193e06a4e6SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 4920a5b23f4aSJose E. Roman nextai[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 49213e06a4e6SHong Zhang } 49222257cef7SHong Zhang 4923d0609cedSBarry Smith MatPreallocateBegin(comm, m, n, dnz, onz); 4924bcc1bcd5SHong Zhang len = 0; 492558cb9c82SHong Zhang for (i = 0; i < m; i++) { 492658cb9c82SHong Zhang bnzi = 0; 492758cb9c82SHong Zhang /* add local non-zero cols of this proc's seqmat into lnk */ 492858cb9c82SHong Zhang arow = owners[rank] + i; 492958cb9c82SHong Zhang anzi = ai[arow + 1] - ai[arow]; 493058cb9c82SHong Zhang aj = a->j + ai[arow]; 49319566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 493258cb9c82SHong Zhang bnzi += nlnk; 493358cb9c82SHong Zhang /* add received col data into lnk */ 493451a7d1a8SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 493555d1abb9SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 49363e06a4e6SHong Zhang anzi = *(nextai[k] + 1) - *nextai[k]; 49373e06a4e6SHong Zhang aj = buf_rj[k] + *nextai[k]; 49389566063dSJacob Faibussowitsch PetscCall(PetscLLAddSorted(anzi, aj, N, &nlnk, lnk, lnkbt)); 49393e06a4e6SHong Zhang bnzi += nlnk; 49409371c9d4SSatish Balay nextrow[k]++; 49419371c9d4SSatish Balay nextai[k]++; 49423e06a4e6SHong Zhang } 494358cb9c82SHong Zhang } 4944bcc1bcd5SHong Zhang if (len < bnzi) len = bnzi; /* =max(bnzi) */ 494558cb9c82SHong Zhang 494658cb9c82SHong Zhang /* if free space is not available, make more free space */ 494748a46eb9SPierre Jolivet if (current_space->local_remaining < bnzi) PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(bnzi, current_space->total_array_size), ¤t_space)); 494858cb9c82SHong Zhang /* copy data into free space, then initialize lnk */ 49499566063dSJacob Faibussowitsch PetscCall(PetscLLClean(N, N, bnzi, lnk, current_space->array, lnkbt)); 49509566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], bnzi, current_space->array, dnz, onz)); 4951bcc1bcd5SHong Zhang 495258cb9c82SHong Zhang current_space->array += bnzi; 495358cb9c82SHong Zhang current_space->local_used += bnzi; 495458cb9c82SHong Zhang current_space->local_remaining -= bnzi; 495558cb9c82SHong Zhang 495658cb9c82SHong Zhang bi[i + 1] = bi[i] + bnzi; 495758cb9c82SHong Zhang } 4958bcc1bcd5SHong Zhang 49599566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextai)); 4960bcc1bcd5SHong Zhang 496184648c2dSPierre Jolivet PetscCall(PetscMalloc1(bi[m], &bj)); 49629566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 49639566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 4964409913e3SHong Zhang 4965bcc1bcd5SHong Zhang /* create symbolic parallel matrix B_mpi */ 49669566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(seqmat, &bs, &cbs)); 49679566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B_mpi)); 496854b84b50SHong Zhang if (n == PETSC_DECIDE) { 49699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, N)); 497054b84b50SHong Zhang } else { 49719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B_mpi, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 497254b84b50SHong Zhang } 49739566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B_mpi, bs, cbs)); 49749566063dSJacob Faibussowitsch PetscCall(MatSetType(B_mpi, MATMPIAIJ)); 49759566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B_mpi, 0, dnz, 0, onz)); 4976d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 49779566063dSJacob Faibussowitsch PetscCall(MatSetOption(B_mpi, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)); 497858cb9c82SHong Zhang 497990431a8fSHong Zhang /* B_mpi is not ready for use - assembly will be done by MatCreateMPIAIJSumSeqAIJNumeric() */ 49806abd8857SHong Zhang B_mpi->assembled = PETSC_FALSE; 4981affca5deSHong Zhang merge->bi = bi; 4982affca5deSHong Zhang merge->bj = bj; 498302c68681SHong Zhang merge->buf_ri = buf_ri; 498402c68681SHong Zhang merge->buf_rj = buf_rj; 49850298fd71SBarry Smith merge->coi = NULL; 49860298fd71SBarry Smith merge->coj = NULL; 49870298fd71SBarry Smith merge->owners_co = NULL; 4988affca5deSHong Zhang 49899566063dSJacob Faibussowitsch PetscCall(PetscCommDestroy(&comm)); 4990bf0cc555SLisandro Dalcin 4991affca5deSHong Zhang /* attach the supporting struct to B_mpi for reuse */ 49929566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 49939566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(container, merge)); 4994cc1eb50dSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatMergeSeqsToMPIDestroy)); 49959566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)B_mpi, "MatMergeSeqsToMPI", (PetscObject)container)); 49969566063dSJacob Faibussowitsch PetscCall(PetscContainerDestroy(&container)); 4997affca5deSHong Zhang *mpimat = B_mpi; 499838f152feSBarry Smith 49999566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompisym, seqmat, 0, 0, 0)); 50003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5001e5f2cdd8SHong Zhang } 500225616d81SHong Zhang 5003cc4c1da9SBarry Smith /*@ 500411a5261eSBarry Smith MatCreateMPIAIJSumSeqAIJ - Creates a `MATMPIAIJ` matrix by adding sequential 5005d4036a1aSHong Zhang matrices from each processor 5006d4036a1aSHong Zhang 5007d083f849SBarry Smith Collective 5008d4036a1aSHong Zhang 5009d4036a1aSHong Zhang Input Parameters: 5010d4036a1aSHong Zhang + comm - the communicators the parallel matrix will live on 5011d4036a1aSHong Zhang . seqmat - the input sequential matrices 501211a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE`) 501311a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE`) 501411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5015d4036a1aSHong Zhang 5016d4036a1aSHong Zhang Output Parameter: 5017d4036a1aSHong Zhang . mpimat - the parallel matrix generated 5018d4036a1aSHong Zhang 5019d4036a1aSHong Zhang Level: advanced 5020d4036a1aSHong Zhang 502111a5261eSBarry Smith Note: 5022d4036a1aSHong Zhang The dimensions of the sequential matrix in each processor MUST be the same. 50237da3f0dfSBarry Smith The input seqmat is included into the container `MatMergeSeqsToMPIDestroy`, and will be 5024b6971eaeSBarry Smith destroyed when `mpimat` is destroyed. Call `PetscObjectQuery()` to access `seqmat`. 50252ef1f0ffSBarry Smith 50261cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateAIJ()` 5027d4036a1aSHong Zhang @*/ 5028d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJSumSeqAIJ(MPI_Comm comm, Mat seqmat, PetscInt m, PetscInt n, MatReuse scall, Mat *mpimat) 5029d71ae5a4SJacob Faibussowitsch { 50307e63b356SHong Zhang PetscMPIInt size; 503155d1abb9SHong Zhang 503255d1abb9SHong Zhang PetscFunctionBegin; 50339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 50347e63b356SHong Zhang if (size == 1) { 50359566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 50367e63b356SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 50379566063dSJacob Faibussowitsch PetscCall(MatDuplicate(seqmat, MAT_COPY_VALUES, mpimat)); 50387e63b356SHong Zhang } else { 50399566063dSJacob Faibussowitsch PetscCall(MatCopy(seqmat, *mpimat, SAME_NONZERO_PATTERN)); 50407e63b356SHong Zhang } 50419566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50437e63b356SHong Zhang } 50449566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Seqstompi, seqmat, 0, 0, 0)); 504548a46eb9SPierre Jolivet if (scall == MAT_INITIAL_MATRIX) PetscCall(MatCreateMPIAIJSumSeqAIJSymbolic(comm, seqmat, m, n, mpimat)); 50469566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAIJSumSeqAIJNumeric(seqmat, *mpimat)); 50479566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Seqstompi, seqmat, 0, 0, 0)); 50483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 504955d1abb9SHong Zhang } 50504ebed01fSBarry Smith 5051bc08b0f1SBarry Smith /*@ 50522920cce0SJacob Faibussowitsch MatAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATAIJ` matrix. 50538a9c020eSBarry Smith 50548a9c020eSBarry Smith Not Collective 50558a9c020eSBarry Smith 50562fe279fdSBarry Smith Input Parameter: 505720f4b53cSBarry Smith . A - the matrix 50588a9c020eSBarry Smith 50598a9c020eSBarry Smith Output Parameter: 50608a9c020eSBarry Smith . A_loc - the local sequential matrix generated 50618a9c020eSBarry Smith 50628a9c020eSBarry Smith Level: developer 50638a9c020eSBarry Smith 50648a9c020eSBarry Smith Notes: 50652920cce0SJacob Faibussowitsch The matrix is created by taking `A`'s local rows and putting them into a sequential matrix 50662920cce0SJacob Faibussowitsch with `mlocal` rows and `n` columns. Where `mlocal` is obtained with `MatGetLocalSize()` and 50672920cce0SJacob Faibussowitsch `n` is the global column count obtained with `MatGetSize()` 50682920cce0SJacob Faibussowitsch 506911a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 50708a9c020eSBarry Smith 50712920cce0SJacob Faibussowitsch For parallel matrices this creates an entirely new matrix. If the matrix is sequential it merely increases the reference count. 50722920cce0SJacob Faibussowitsch 507311a5261eSBarry Smith Destroy the matrix with `MatDestroy()` 50748a9c020eSBarry Smith 50751cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatMPIAIJGetLocalMat()` 50768a9c020eSBarry Smith @*/ 5077d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAIJGetLocalMat(Mat A, Mat *A_loc) 5078d71ae5a4SJacob Faibussowitsch { 50798a9c020eSBarry Smith PetscBool mpi; 50808a9c020eSBarry Smith 50818a9c020eSBarry Smith PetscFunctionBegin; 50828a9c020eSBarry Smith PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &mpi)); 50838a9c020eSBarry Smith if (mpi) { 50848a9c020eSBarry Smith PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, A_loc)); 50858a9c020eSBarry Smith } else { 50868a9c020eSBarry Smith *A_loc = A; 50878a9c020eSBarry Smith PetscCall(PetscObjectReference((PetscObject)*A_loc)); 50888a9c020eSBarry Smith } 50893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 50908a9c020eSBarry Smith } 50918a9c020eSBarry Smith 50928a9c020eSBarry Smith /*@ 50932920cce0SJacob Faibussowitsch MatMPIAIJGetLocalMat - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix. 509425616d81SHong Zhang 509532fba14fSHong Zhang Not Collective 509625616d81SHong Zhang 509725616d81SHong Zhang Input Parameters: 509825616d81SHong Zhang + A - the matrix 509911a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 510025616d81SHong Zhang 510125616d81SHong Zhang Output Parameter: 510225616d81SHong Zhang . A_loc - the local sequential matrix generated 510325616d81SHong Zhang 510425616d81SHong Zhang Level: developer 510525616d81SHong Zhang 510677c65a98SStefano Zampini Notes: 51072920cce0SJacob Faibussowitsch The matrix is created by taking all `A`'s local rows and putting them into a sequential 51082920cce0SJacob Faibussowitsch matrix with `mlocal` rows and `n` columns.`mlocal` is the row count obtained with 51092920cce0SJacob Faibussowitsch `MatGetLocalSize()` and `n` is the global column count obtained with `MatGetSize()`. 51102920cce0SJacob Faibussowitsch 511111a5261eSBarry Smith In other words combines the two parts of a parallel `MATMPIAIJ` matrix on each process to a single matrix. 51128a9c020eSBarry Smith 51132920cce0SJacob Faibussowitsch When `A` is sequential and `MAT_INITIAL_MATRIX` is requested, the matrix returned is the diagonal part of `A` (which contains the entire matrix), 51142920cce0SJacob Faibussowitsch with its reference count increased by one. Hence changing values of `A_loc` changes `A`. If `MAT_REUSE_MATRIX` is requested on a sequential matrix 51152920cce0SJacob Faibussowitsch then `MatCopy`(Adiag,*`A_loc`,`SAME_NONZERO_PATTERN`) is called to fill `A_loc`. Thus one can preallocate the appropriate sequential matrix `A_loc` 51162920cce0SJacob Faibussowitsch and then call this routine with `MAT_REUSE_MATRIX`. In this case, one can modify the values of `A_loc` without affecting the original sequential matrix. 511777c65a98SStefano Zampini 51181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMatCondensed()`, `MatMPIAIJGetLocalMatMerge()` 511925616d81SHong Zhang @*/ 5120d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMat(Mat A, MatReuse scall, Mat *A_loc) 5121d71ae5a4SJacob Faibussowitsch { 512201b7ae99SHong Zhang Mat_MPIAIJ *mpimat = (Mat_MPIAIJ *)A->data; 5123b78526a6SJose E. Roman Mat_SeqAIJ *mat, *a, *b; 5124b78526a6SJose E. Roman PetscInt *ai, *aj, *bi, *bj, *cmap = mpimat->garray; 5125ce496241SStefano Zampini const PetscScalar *aa, *ba, *aav, *bav; 5126ce496241SStefano Zampini PetscScalar *ca, *cam; 512777c65a98SStefano Zampini PetscMPIInt size; 5128d0f46423SBarry Smith PetscInt am = A->rmap->n, i, j, k, cstart = A->cmap->rstart; 51295a7d977cSHong Zhang PetscInt *ci, *cj, col, ncols_d, ncols_o, jo; 51308661ff28SBarry Smith PetscBool match; 513125616d81SHong Zhang 513225616d81SHong Zhang PetscFunctionBegin; 51339566063dSJacob Faibussowitsch PetscCall(PetscStrbeginswith(((PetscObject)A)->type_name, MATMPIAIJ, &match)); 513428b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 51359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 513677c65a98SStefano Zampini if (size == 1) { 513777c65a98SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 51389566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)mpimat->A)); 513977c65a98SStefano Zampini *A_loc = mpimat->A; 514077c65a98SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 51419566063dSJacob Faibussowitsch PetscCall(MatCopy(mpimat->A, *A_loc, SAME_NONZERO_PATTERN)); 514277c65a98SStefano Zampini } 51433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 514477c65a98SStefano Zampini } 514570a9ba44SHong Zhang 51469566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5147f4f49eeaSPierre Jolivet a = (Mat_SeqAIJ *)mpimat->A->data; 5148f4f49eeaSPierre Jolivet b = (Mat_SeqAIJ *)mpimat->B->data; 51499371c9d4SSatish Balay ai = a->i; 51509371c9d4SSatish Balay aj = a->j; 51519371c9d4SSatish Balay bi = b->i; 51529371c9d4SSatish Balay bj = b->j; 51539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->A, &aav)); 51549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(mpimat->B, &bav)); 5155ce496241SStefano Zampini aa = aav; 5156ce496241SStefano Zampini ba = bav; 515701b7ae99SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 51589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 5159dea91ad1SHong Zhang ci[0] = 0; 5160ad540459SPierre Jolivet for (i = 0; i < am; i++) ci[i + 1] = ci[i] + (ai[i + 1] - ai[i]) + (bi[i + 1] - bi[i]); 51619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &cj)); 51629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + ci[am], &ca)); 5163dea91ad1SHong Zhang k = 0; 516401b7ae99SHong Zhang for (i = 0; i < am; i++) { 51655a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 51665a7d977cSHong Zhang ncols_d = ai[i + 1] - ai[i]; 516701b7ae99SHong Zhang /* off-diagonal portion of A */ 51685a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 51695a7d977cSHong Zhang col = cmap[*bj]; 51705a7d977cSHong Zhang if (col >= cstart) break; 51719371c9d4SSatish Balay cj[k] = col; 51729371c9d4SSatish Balay bj++; 51735a7d977cSHong Zhang ca[k++] = *ba++; 51745a7d977cSHong Zhang } 51755a7d977cSHong Zhang /* diagonal portion of A */ 51765a7d977cSHong Zhang for (j = 0; j < ncols_d; j++) { 51775a7d977cSHong Zhang cj[k] = cstart + *aj++; 51785a7d977cSHong Zhang ca[k++] = *aa++; 51795a7d977cSHong Zhang } 51805a7d977cSHong Zhang /* off-diagonal portion of A */ 51815a7d977cSHong Zhang for (j = jo; j < ncols_o; j++) { 51825a7d977cSHong Zhang cj[k] = cmap[*bj++]; 51835a7d977cSHong Zhang ca[k++] = *ba++; 51845a7d977cSHong Zhang } 518525616d81SHong Zhang } 5186dea91ad1SHong Zhang /* put together the new matrix */ 51879566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, A->cmap->N, ci, cj, ca, A_loc)); 5188dea91ad1SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5189dea91ad1SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 5190dea91ad1SHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5191e6b907acSBarry Smith mat->free_a = PETSC_TRUE; 5192e6b907acSBarry Smith mat->free_ij = PETSC_TRUE; 5193dea91ad1SHong Zhang mat->nonew = 0; 51945a7d977cSHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 51955a7d977cSHong Zhang mat = (Mat_SeqAIJ *)(*A_loc)->data; 5196fff043a9SJunchao Zhang ci = mat->i; 5197fff043a9SJunchao Zhang cj = mat->j; 51989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &cam)); 51995a7d977cSHong Zhang for (i = 0; i < am; i++) { 52005a7d977cSHong Zhang /* off-diagonal portion of A */ 52015a7d977cSHong Zhang ncols_o = bi[i + 1] - bi[i]; 52025a7d977cSHong Zhang for (jo = 0; jo < ncols_o; jo++) { 52035a7d977cSHong Zhang col = cmap[*bj]; 52045a7d977cSHong Zhang if (col >= cstart) break; 52059371c9d4SSatish Balay *cam++ = *ba++; 52069371c9d4SSatish Balay bj++; 52075a7d977cSHong Zhang } 52085a7d977cSHong Zhang /* diagonal portion of A */ 5209ecc9b87dSHong Zhang ncols_d = ai[i + 1] - ai[i]; 5210a77337e4SBarry Smith for (j = 0; j < ncols_d; j++) *cam++ = *aa++; 52115a7d977cSHong Zhang /* off-diagonal portion of A */ 5212f33d1a9aSHong Zhang for (j = jo; j < ncols_o; j++) { 52139371c9d4SSatish Balay *cam++ = *ba++; 52149371c9d4SSatish Balay bj++; 5215f33d1a9aSHong Zhang } 52165a7d977cSHong Zhang } 52179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &cam)); 521898921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 52199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->A, &aav)); 52209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(mpimat->B, &bav)); 52219566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 52223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 522325616d81SHong Zhang } 522425616d81SHong Zhang 5225ed502f03SStefano Zampini /*@ 522611a5261eSBarry Smith MatMPIAIJGetLocalMatMerge - Creates a `MATSEQAIJ` from a `MATMPIAIJ` matrix by taking all its local rows and putting them into a sequential matrix with 52274cf0e950SBarry Smith mlocal rows and n columns. Where n is the sum of the number of columns of the diagonal and off-diagonal part 5228ed502f03SStefano Zampini 5229ed502f03SStefano Zampini Not Collective 5230ed502f03SStefano Zampini 5231ed502f03SStefano Zampini Input Parameters: 5232ed502f03SStefano Zampini + A - the matrix 523311a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5234ed502f03SStefano Zampini 5235d8d19677SJose E. Roman Output Parameters: 52362ef1f0ffSBarry Smith + glob - sequential `IS` with global indices associated with the columns of the local sequential matrix generated (can be `NULL`) 5237ed502f03SStefano Zampini - A_loc - the local sequential matrix generated 5238ed502f03SStefano Zampini 5239ed502f03SStefano Zampini Level: developer 5240ed502f03SStefano Zampini 524111a5261eSBarry Smith Note: 52422ef1f0ffSBarry Smith This is different from `MatMPIAIJGetLocalMat()` since the first columns in the returning matrix are those associated with the diagonal 52434cf0e950SBarry Smith part, then those associated with the off-diagonal part (in its local ordering) 5244ed502f03SStefano Zampini 52451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()`, `MatMPIAIJGetLocalMatCondensed()` 5246ed502f03SStefano Zampini @*/ 5247d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatMerge(Mat A, MatReuse scall, IS *glob, Mat *A_loc) 5248d71ae5a4SJacob Faibussowitsch { 5249ed502f03SStefano Zampini Mat Ao, Ad; 5250ed502f03SStefano Zampini const PetscInt *cmap; 5251ed502f03SStefano Zampini PetscMPIInt size; 5252ed502f03SStefano Zampini PetscErrorCode (*f)(Mat, MatReuse, IS *, Mat *); 5253ed502f03SStefano Zampini 5254ed502f03SStefano Zampini PetscFunctionBegin; 52559566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetSeqAIJ(A, &Ad, &Ao, &cmap)); 52569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 5257ed502f03SStefano Zampini if (size == 1) { 5258ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 52599566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)Ad)); 5260ed502f03SStefano Zampini *A_loc = Ad; 5261ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 52629566063dSJacob Faibussowitsch PetscCall(MatCopy(Ad, *A_loc, SAME_NONZERO_PATTERN)); 5263ed502f03SStefano Zampini } 52649566063dSJacob Faibussowitsch if (glob) PetscCall(ISCreateStride(PetscObjectComm((PetscObject)Ad), Ad->cmap->n, Ad->cmap->rstart, 1, glob)); 52653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5266ed502f03SStefano Zampini } 52679566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatMPIAIJGetLocalMatMerge_C", &f)); 52689566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmat, A, 0, 0, 0)); 5269ed502f03SStefano Zampini if (f) { 52709566063dSJacob Faibussowitsch PetscCall((*f)(A, scall, glob, A_loc)); 5271ed502f03SStefano Zampini } else { 5272ed502f03SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ *)Ad->data; 5273ed502f03SStefano Zampini Mat_SeqAIJ *b = (Mat_SeqAIJ *)Ao->data; 5274ed502f03SStefano Zampini Mat_SeqAIJ *c; 5275ed502f03SStefano Zampini PetscInt *ai = a->i, *aj = a->j; 5276ed502f03SStefano Zampini PetscInt *bi = b->i, *bj = b->j; 5277ed502f03SStefano Zampini PetscInt *ci, *cj; 5278ed502f03SStefano Zampini const PetscScalar *aa, *ba; 5279ed502f03SStefano Zampini PetscScalar *ca; 5280ed502f03SStefano Zampini PetscInt i, j, am, dn, on; 5281ed502f03SStefano Zampini 52829566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ad, &am, &dn)); 52839566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(Ao, NULL, &on)); 52849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ad, &aa)); 52859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(Ao, &ba)); 5286ed502f03SStefano Zampini if (scall == MAT_INITIAL_MATRIX) { 5287ed502f03SStefano Zampini PetscInt k; 52889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1 + am, &ci)); 52899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &cj)); 52909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ai[am] + bi[am], &ca)); 5291ed502f03SStefano Zampini ci[0] = 0; 5292ed502f03SStefano Zampini for (i = 0, k = 0; i < am; i++) { 5293ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5294ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5295ed502f03SStefano Zampini ci[i + 1] = ci[i] + ncols_o + ncols_d; 5296ed502f03SStefano Zampini /* diagonal portion of A */ 5297ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++, k++) { 5298ed502f03SStefano Zampini cj[k] = *aj++; 5299ed502f03SStefano Zampini ca[k] = *aa++; 5300ed502f03SStefano Zampini } 5301ed502f03SStefano Zampini /* off-diagonal portion of A */ 5302ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++, k++) { 5303ed502f03SStefano Zampini cj[k] = dn + *bj++; 5304ed502f03SStefano Zampini ca[k] = *ba++; 5305ed502f03SStefano Zampini } 5306ed502f03SStefano Zampini } 5307ed502f03SStefano Zampini /* put together the new matrix */ 53089566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, am, dn + on, ci, cj, ca, A_loc)); 5309ed502f03SStefano Zampini /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5310ed502f03SStefano Zampini /* Since these are PETSc arrays, change flags to free them as necessary. */ 5311ed502f03SStefano Zampini c = (Mat_SeqAIJ *)(*A_loc)->data; 5312ed502f03SStefano Zampini c->free_a = PETSC_TRUE; 5313ed502f03SStefano Zampini c->free_ij = PETSC_TRUE; 5314ed502f03SStefano Zampini c->nonew = 0; 53159566063dSJacob Faibussowitsch PetscCall(MatSetType(*A_loc, ((PetscObject)Ad)->type_name)); 5316ed502f03SStefano Zampini } else if (scall == MAT_REUSE_MATRIX) { 53179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*A_loc, &ca)); 5318ed502f03SStefano Zampini for (i = 0; i < am; i++) { 5319ed502f03SStefano Zampini const PetscInt ncols_d = ai[i + 1] - ai[i]; 5320ed502f03SStefano Zampini const PetscInt ncols_o = bi[i + 1] - bi[i]; 5321ed502f03SStefano Zampini /* diagonal portion of A */ 5322ed502f03SStefano Zampini for (j = 0; j < ncols_d; j++) *ca++ = *aa++; 5323ed502f03SStefano Zampini /* off-diagonal portion of A */ 5324ed502f03SStefano Zampini for (j = 0; j < ncols_o; j++) *ca++ = *ba++; 5325ed502f03SStefano Zampini } 53269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*A_loc, &ca)); 532798921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Invalid MatReuse %d", (int)scall); 53289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ad, &aa)); 53299566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(Ao, &aa)); 5330ed502f03SStefano Zampini if (glob) { 5331ed502f03SStefano Zampini PetscInt cst, *gidx; 5332ed502f03SStefano Zampini 53339566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(A, &cst, NULL)); 53349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(dn + on, &gidx)); 5335ed502f03SStefano Zampini for (i = 0; i < dn; i++) gidx[i] = cst + i; 5336ed502f03SStefano Zampini for (i = 0; i < on; i++) gidx[i + dn] = cmap[i]; 53379566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PetscObjectComm((PetscObject)Ad), dn + on, gidx, PETSC_OWN_POINTER, glob)); 5338ed502f03SStefano Zampini } 5339ed502f03SStefano Zampini } 53409566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmat, A, 0, 0, 0)); 53413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5342ed502f03SStefano Zampini } 5343ed502f03SStefano Zampini 534432fba14fSHong Zhang /*@C 534511a5261eSBarry Smith MatMPIAIJGetLocalMatCondensed - Creates a `MATSEQAIJ` matrix from an `MATMPIAIJ` matrix by taking all its local rows and NON-ZERO columns 534632fba14fSHong Zhang 534732fba14fSHong Zhang Not Collective 534832fba14fSHong Zhang 534932fba14fSHong Zhang Input Parameters: 535032fba14fSHong Zhang + A - the matrix 535111a5261eSBarry Smith . scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 535220f4b53cSBarry Smith . row - index set of rows to extract (or `NULL`) 535320f4b53cSBarry Smith - col - index set of columns to extract (or `NULL`) 535432fba14fSHong Zhang 535532fba14fSHong Zhang Output Parameter: 535632fba14fSHong Zhang . A_loc - the local sequential matrix generated 535732fba14fSHong Zhang 535832fba14fSHong Zhang Level: developer 535932fba14fSHong Zhang 53601cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIAIJ`, `MatGetOwnershipRange()`, `MatMPIAIJGetLocalMat()` 536132fba14fSHong Zhang @*/ 5362d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJGetLocalMatCondensed(Mat A, MatReuse scall, IS *row, IS *col, Mat *A_loc) 5363d71ae5a4SJacob Faibussowitsch { 536432fba14fSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 536532fba14fSHong Zhang PetscInt i, start, end, ncols, nzA, nzB, *cmap, imark, *idx; 536632fba14fSHong Zhang IS isrowa, iscola; 536732fba14fSHong Zhang Mat *aloc; 53684a2b5492SBarry Smith PetscBool match; 536932fba14fSHong Zhang 537032fba14fSHong Zhang PetscFunctionBegin; 53719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &match)); 537228b400f6SJacob Faibussowitsch PetscCheck(match, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Requires MATMPIAIJ matrix as input"); 53739566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 537432fba14fSHong Zhang if (!row) { 53759371c9d4SSatish Balay start = A->rmap->rstart; 53769371c9d4SSatish Balay end = A->rmap->rend; 53779566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, end - start, start, 1, &isrowa)); 537832fba14fSHong Zhang } else { 537932fba14fSHong Zhang isrowa = *row; 538032fba14fSHong Zhang } 538132fba14fSHong Zhang if (!col) { 5382d0f46423SBarry Smith start = A->cmap->rstart; 538332fba14fSHong Zhang cmap = a->garray; 5384d0f46423SBarry Smith nzA = a->A->cmap->n; 5385d0f46423SBarry Smith nzB = a->B->cmap->n; 53869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 538732fba14fSHong Zhang ncols = 0; 538832fba14fSHong Zhang for (i = 0; i < nzB; i++) { 538932fba14fSHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 539032fba14fSHong Zhang else break; 539132fba14fSHong Zhang } 539232fba14fSHong Zhang imark = i; 539332fba14fSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; 539432fba14fSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; 53959566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &iscola)); 539632fba14fSHong Zhang } else { 539732fba14fSHong Zhang iscola = *col; 539832fba14fSHong Zhang } 539932fba14fSHong Zhang if (scall != MAT_INITIAL_MATRIX) { 54009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &aloc)); 540132fba14fSHong Zhang aloc[0] = *A_loc; 540232fba14fSHong Zhang } 54039566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(A, 1, &isrowa, &iscola, scall, &aloc)); 5404109e0772SStefano Zampini if (!col) { /* attach global id of condensed columns */ 54059566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)aloc[0], "_petsc_GetLocalMatCondensed_iscol", (PetscObject)iscola)); 5406109e0772SStefano Zampini } 540732fba14fSHong Zhang *A_loc = aloc[0]; 54089566063dSJacob Faibussowitsch PetscCall(PetscFree(aloc)); 540948a46eb9SPierre Jolivet if (!row) PetscCall(ISDestroy(&isrowa)); 541048a46eb9SPierre Jolivet if (!col) PetscCall(ISDestroy(&iscola)); 54119566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_Getlocalmatcondensed, A, 0, 0, 0)); 54123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 541332fba14fSHong Zhang } 541432fba14fSHong Zhang 54155c65b9ecSFande Kong /* 54165c65b9ecSFande Kong * Create a sequential AIJ matrix based on row indices. a whole column is extracted once a row is matched. 54175c65b9ecSFande Kong * Row could be local or remote.The routine is designed to be scalable in memory so that nothing is based 54185c65b9ecSFande Kong * on a global size. 54195c65b9ecSFande Kong * */ 5420ba38deedSJacob Faibussowitsch static PetscErrorCode MatCreateSeqSubMatrixWithRows_Private(Mat P, IS rows, Mat *P_oth) 5421d71ae5a4SJacob Faibussowitsch { 54225c65b9ecSFande Kong Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 5423f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data, *p_oth; 5424131c27b5Sprj- PetscInt plocalsize, nrows, *ilocal, *oilocal, i, lidx, *nrcols, *nlcols, ncol; 5425131c27b5Sprj- PetscMPIInt owner; 54265c65b9ecSFande Kong PetscSFNode *iremote, *oiremote; 54275c65b9ecSFande Kong const PetscInt *lrowindices; 54285c65b9ecSFande Kong PetscSF sf, osf; 54295c65b9ecSFande Kong PetscInt pcstart, *roffsets, *loffsets, *pnnz, j; 54305c65b9ecSFande Kong PetscInt ontotalcols, dntotalcols, ntotalcols, nout; 54315c65b9ecSFande Kong MPI_Comm comm; 54325c65b9ecSFande Kong ISLocalToGlobalMapping mapping; 5433fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 54345c65b9ecSFande Kong 54355c65b9ecSFande Kong PetscFunctionBegin; 54369566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)P, &comm)); 54375c65b9ecSFande Kong /* plocalsize is the number of roots 54385c65b9ecSFande Kong * nrows is the number of leaves 54395c65b9ecSFande Kong * */ 54409566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(P, &plocalsize, NULL)); 54419566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(rows, &nrows)); 54429566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &iremote)); 54439566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rows, &lrowindices)); 54445c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 54455c65b9ecSFande Kong /* Find a remote index and an owner for a row 54465c65b9ecSFande Kong * The row could be local or remote 54475c65b9ecSFande Kong * */ 544834bcad68SFande Kong owner = 0; 544934bcad68SFande Kong lidx = 0; 54509566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, &lidx)); 54515c65b9ecSFande Kong iremote[i].index = lidx; 54525c65b9ecSFande Kong iremote[i].rank = owner; 54535c65b9ecSFande Kong } 54545c65b9ecSFande Kong /* Create SF to communicate how many nonzero columns for each row */ 54559566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 5456f332b1cbSPierre Jolivet /* SF will figure out the number of nonzero columns for each row, and their 54575c65b9ecSFande Kong * offsets 54585c65b9ecSFande Kong * */ 54599566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, plocalsize, nrows, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 54609566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 54619566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 5462bc8e477aSFande Kong 54639566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * (plocalsize + 1), &roffsets)); 54649566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * plocalsize, &nrcols)); 54659566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nrows, &pnnz)); 54665c65b9ecSFande Kong roffsets[0] = 0; 54675c65b9ecSFande Kong roffsets[1] = 0; 54685c65b9ecSFande Kong for (i = 0; i < plocalsize; i++) { 54694cf0e950SBarry Smith /* diagonal */ 54705c65b9ecSFande Kong nrcols[i * 2 + 0] = pd->i[i + 1] - pd->i[i]; 54714cf0e950SBarry Smith /* off-diagonal */ 54725c65b9ecSFande Kong nrcols[i * 2 + 1] = po->i[i + 1] - po->i[i]; 54735c65b9ecSFande Kong /* compute offsets so that we relative location for each row */ 54745c65b9ecSFande Kong roffsets[(i + 1) * 2 + 0] = roffsets[i * 2 + 0] + nrcols[i * 2 + 0]; 54755c65b9ecSFande Kong roffsets[(i + 1) * 2 + 1] = roffsets[i * 2 + 1] + nrcols[i * 2 + 1]; 54765c65b9ecSFande Kong } 54779566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &nlcols)); 54789566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(2 * nrows, &loffsets)); 54795c65b9ecSFande Kong /* 'r' means root, and 'l' means leaf */ 54809566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 54819566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 54829566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, nrcols, nlcols, MPI_REPLACE)); 54839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_2INT, roffsets, loffsets, MPI_REPLACE)); 54849566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 54859566063dSJacob Faibussowitsch PetscCall(PetscFree(roffsets)); 54869566063dSJacob Faibussowitsch PetscCall(PetscFree(nrcols)); 54875c65b9ecSFande Kong dntotalcols = 0; 54885c65b9ecSFande Kong ontotalcols = 0; 5489bc8e477aSFande Kong ncol = 0; 54905c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 54915c65b9ecSFande Kong pnnz[i] = nlcols[i * 2 + 0] + nlcols[i * 2 + 1]; 5492bc8e477aSFande Kong ncol = PetscMax(pnnz[i], ncol); 54934cf0e950SBarry Smith /* diagonal */ 54945c65b9ecSFande Kong dntotalcols += nlcols[i * 2 + 0]; 54954cf0e950SBarry Smith /* off-diagonal */ 54965c65b9ecSFande Kong ontotalcols += nlcols[i * 2 + 1]; 54975c65b9ecSFande Kong } 54985c65b9ecSFande Kong /* We do not need to figure the right number of columns 54995c65b9ecSFande Kong * since all the calculations will be done by going through the raw data 55005c65b9ecSFande Kong * */ 55019566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJ(PETSC_COMM_SELF, nrows, ncol, 0, pnnz, P_oth)); 55029566063dSJacob Faibussowitsch PetscCall(MatSetUp(*P_oth)); 55039566063dSJacob Faibussowitsch PetscCall(PetscFree(pnnz)); 55045c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 55054cf0e950SBarry Smith /* diagonal */ 55069566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &iremote)); 55074cf0e950SBarry Smith /* off-diagonal */ 55089566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oiremote)); 55094cf0e950SBarry Smith /* diagonal */ 55109566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(dntotalcols, &ilocal)); 55114cf0e950SBarry Smith /* off-diagonal */ 55129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ontotalcols, &oilocal)); 55135c65b9ecSFande Kong dntotalcols = 0; 55145c65b9ecSFande Kong ontotalcols = 0; 55155c65b9ecSFande Kong ntotalcols = 0; 55165c65b9ecSFande Kong for (i = 0; i < nrows; i++) { 551734bcad68SFande Kong owner = 0; 55189566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwnerIndex(P->rmap, lrowindices[i], &owner, NULL)); 55195c65b9ecSFande Kong /* Set iremote for diag matrix */ 55205c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 0]; j++) { 55215c65b9ecSFande Kong iremote[dntotalcols].index = loffsets[i * 2 + 0] + j; 55225c65b9ecSFande Kong iremote[dntotalcols].rank = owner; 55235c65b9ecSFande Kong /* P_oth is seqAIJ so that ilocal need to point to the first part of memory */ 55245c65b9ecSFande Kong ilocal[dntotalcols++] = ntotalcols++; 55255c65b9ecSFande Kong } 55264cf0e950SBarry Smith /* off-diagonal */ 55275c65b9ecSFande Kong for (j = 0; j < nlcols[i * 2 + 1]; j++) { 55285c65b9ecSFande Kong oiremote[ontotalcols].index = loffsets[i * 2 + 1] + j; 55295c65b9ecSFande Kong oiremote[ontotalcols].rank = owner; 55305c65b9ecSFande Kong oilocal[ontotalcols++] = ntotalcols++; 55315c65b9ecSFande Kong } 55325c65b9ecSFande Kong } 55339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rows, &lrowindices)); 55349566063dSJacob Faibussowitsch PetscCall(PetscFree(loffsets)); 55359566063dSJacob Faibussowitsch PetscCall(PetscFree(nlcols)); 55369566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf)); 55375c65b9ecSFande Kong /* P serves as roots and P_oth is leaves 55385c65b9ecSFande Kong * Diag matrix 55395c65b9ecSFande Kong * */ 55409566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, pd->i[plocalsize], dntotalcols, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 55419566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf)); 55429566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 55435c65b9ecSFande Kong 55449566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &osf)); 55454cf0e950SBarry Smith /* off-diagonal */ 55469566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(osf, po->i[plocalsize], ontotalcols, oilocal, PETSC_OWN_POINTER, oiremote, PETSC_OWN_POINTER)); 55479566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(osf)); 55489566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(osf)); 55499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 55509566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 55514cf0e950SBarry Smith /* operate on the matrix internal data to save memory */ 55529566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 55539566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 55549566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &pcstart, NULL)); 55555c65b9ecSFande Kong /* Convert to global indices for diag matrix */ 55565c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] += pcstart; 55579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55585c65b9ecSFande Kong /* We want P_oth store global indices */ 55599566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingCreate(comm, 1, p->B->cmap->n, p->garray, PETSC_COPY_VALUES, &mapping)); 55605c65b9ecSFande Kong /* Use memory scalable approach */ 55619566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingSetType(mapping, ISLOCALTOGLOBALMAPPINGHASH)); 55629566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingApply(mapping, po->i[plocalsize], po->j, po->j)); 55639566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 55649566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_INT, pd->j, p_oth->j, MPI_REPLACE)); 55655c65b9ecSFande Kong /* Convert back to local indices */ 55665c65b9ecSFande Kong for (i = 0; i < pd->i[plocalsize]; i++) pd->j[i] -= pcstart; 55679566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_INT, po->j, p_oth->j, MPI_REPLACE)); 55685c65b9ecSFande Kong nout = 0; 55699566063dSJacob Faibussowitsch PetscCall(ISGlobalToLocalMappingApply(mapping, IS_GTOLM_DROP, po->i[plocalsize], po->j, &nout, po->j)); 557008401ef6SPierre Jolivet PetscCheck(nout == po->i[plocalsize], comm, PETSC_ERR_ARG_INCOMP, "n %" PetscInt_FMT " does not equal to nout %" PetscInt_FMT " ", po->i[plocalsize], nout); 55719566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&mapping)); 55725c65b9ecSFande Kong /* Exchange values */ 55739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 55749566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 55759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 55769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 55775c65b9ecSFande Kong /* Stop PETSc from shrinking memory */ 55785c65b9ecSFande Kong for (i = 0; i < nrows; i++) p_oth->ilen[i] = p_oth->imax[i]; 55799566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*P_oth, MAT_FINAL_ASSEMBLY)); 55809566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*P_oth, MAT_FINAL_ASSEMBLY)); 55815c65b9ecSFande Kong /* Attach PetscSF objects to P_oth so that we can reuse it later */ 55829566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "diagsf", (PetscObject)sf)); 55839566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "offdiagsf", (PetscObject)osf)); 55849566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 55859566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&osf)); 55863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 55875c65b9ecSFande Kong } 55885c65b9ecSFande Kong 55895c65b9ecSFande Kong /* 55905c65b9ecSFande Kong * Creates a SeqAIJ matrix by taking rows of B that equal to nonzero columns of local A 55915c65b9ecSFande Kong * This supports MPIAIJ and MAIJ 55925c65b9ecSFande Kong * */ 5593d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols_MPIXAIJ(Mat A, Mat P, PetscInt dof, MatReuse reuse, Mat *P_oth) 5594d71ae5a4SJacob Faibussowitsch { 55955c65b9ecSFande Kong Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *p = (Mat_MPIAIJ *)P->data; 5596bc8e477aSFande Kong Mat_SeqAIJ *p_oth; 5597bc8e477aSFande Kong IS rows, map; 5598bc8e477aSFande Kong PetscHMapI hamp; 5599bc8e477aSFande Kong PetscInt i, htsize, *rowindices, off, *mapping, key, count; 56005c65b9ecSFande Kong MPI_Comm comm; 56015c65b9ecSFande Kong PetscSF sf, osf; 5602bc8e477aSFande Kong PetscBool has; 56035c65b9ecSFande Kong 56045c65b9ecSFande Kong PetscFunctionBegin; 56059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 56069566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56075c65b9ecSFande Kong /* If it is the first time, create an index set of off-diag nonzero columns of A, 56085c65b9ecSFande Kong * and then create a submatrix (that often is an overlapping matrix) 56095c65b9ecSFande Kong * */ 56105c65b9ecSFande Kong if (reuse == MAT_INITIAL_MATRIX) { 56115c65b9ecSFande Kong /* Use a hash table to figure out unique keys */ 5612eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(a->B->cmap->n, &hamp)); 56139566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(a->B->cmap->n, &mapping)); 5614bc8e477aSFande Kong count = 0; 5615bc8e477aSFande Kong /* Assume that a->g is sorted, otherwise the following does not make sense */ 5616bc8e477aSFande Kong for (i = 0; i < a->B->cmap->n; i++) { 5617bc8e477aSFande Kong key = a->garray[i] / dof; 56189566063dSJacob Faibussowitsch PetscCall(PetscHMapIHas(hamp, key, &has)); 5619bc8e477aSFande Kong if (!has) { 5620bc8e477aSFande Kong mapping[i] = count; 56219566063dSJacob Faibussowitsch PetscCall(PetscHMapISet(hamp, key, count++)); 5622bc8e477aSFande Kong } else { 5623bc8e477aSFande Kong /* Current 'i' has the same value the previous step */ 5624bc8e477aSFande Kong mapping[i] = count - 1; 56255c65b9ecSFande Kong } 5626bc8e477aSFande Kong } 56279566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, a->B->cmap->n, mapping, PETSC_OWN_POINTER, &map)); 56289566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(hamp, &htsize)); 5629eec179cfSJacob Faibussowitsch PetscCheck(htsize == count, comm, PETSC_ERR_ARG_INCOMP, " Size of hash map %" PetscInt_FMT " is inconsistent with count %" PetscInt_FMT, htsize, count); 56309566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(htsize, &rowindices)); 56315c65b9ecSFande Kong off = 0; 56329566063dSJacob Faibussowitsch PetscCall(PetscHMapIGetKeys(hamp, &off, rowindices)); 56339566063dSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&hamp)); 56349566063dSJacob Faibussowitsch PetscCall(PetscSortInt(htsize, rowindices)); 56359566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, htsize, rowindices, PETSC_OWN_POINTER, &rows)); 56365c65b9ecSFande Kong /* In case, the matrix was already created but users want to recreate the matrix */ 56379566063dSJacob Faibussowitsch PetscCall(MatDestroy(P_oth)); 56389566063dSJacob Faibussowitsch PetscCall(MatCreateSeqSubMatrixWithRows_Private(P, rows, P_oth)); 56399566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*P_oth, "aoffdiagtopothmapping", (PetscObject)map)); 56409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&map)); 56419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&rows)); 56425c65b9ecSFande Kong } else if (reuse == MAT_REUSE_MATRIX) { 56435c65b9ecSFande Kong /* If matrix was already created, we simply update values using SF objects 564435cb6cd3SPierre Jolivet * that as attached to the matrix earlier. 5645fff043a9SJunchao Zhang */ 5646fff043a9SJunchao Zhang const PetscScalar *pd_a, *po_a; 5647fff043a9SJunchao Zhang 56489566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "diagsf", (PetscObject *)&sf)); 56499566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*P_oth, "offdiagsf", (PetscObject *)&osf)); 565008401ef6SPierre Jolivet PetscCheck(sf && osf, comm, PETSC_ERR_ARG_NULL, "Matrix is not initialized yet"); 56515c65b9ecSFande Kong p_oth = (Mat_SeqAIJ *)(*P_oth)->data; 56525c65b9ecSFande Kong /* Update values in place */ 56539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &pd_a)); 56549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &po_a)); 56559566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56569566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPIU_SCALAR, pd_a, p_oth->a, MPI_REPLACE)); 56589566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(osf, MPIU_SCALAR, po_a, p_oth->a, MPI_REPLACE)); 56599566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &pd_a)); 56609566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &po_a)); 56616718818eSStefano Zampini } else SETERRQ(comm, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unknown reuse type"); 56629566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, P, 0, 0)); 56633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 56645c65b9ecSFande Kong } 56655c65b9ecSFande Kong 566625616d81SHong Zhang /*@C 566720f4b53cSBarry Smith MatGetBrowsOfAcols - Returns `IS` that contain rows of `B` that equal to nonzero columns of local `A` 566825616d81SHong Zhang 5669c3339decSBarry Smith Collective 567025616d81SHong Zhang 567125616d81SHong Zhang Input Parameters: 567211a5261eSBarry Smith + A - the first matrix in `MATMPIAIJ` format 567311a5261eSBarry Smith . B - the second matrix in `MATMPIAIJ` format 567411a5261eSBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 567525616d81SHong Zhang 5676f1a722f8SMatthew G. Knepley Output Parameters: 567727430b45SBarry Smith + rowb - On input index sets of rows of B to extract (or `NULL`), modified on output 567827430b45SBarry Smith . colb - On input index sets of columns of B to extract (or `NULL`), modified on output 5679f1a722f8SMatthew G. Knepley - B_seq - the sequential matrix generated 568025616d81SHong Zhang 568125616d81SHong Zhang Level: developer 568225616d81SHong Zhang 568320f4b53cSBarry Smith .seealso: `Mat`, `MATMPIAIJ`, `IS`, `MatReuse` 568425616d81SHong Zhang @*/ 5685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAcols(Mat A, Mat B, MatReuse scall, IS *rowb, IS *colb, Mat *B_seq) 5686d71ae5a4SJacob Faibussowitsch { 5687899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 5688b1d57f15SBarry Smith PetscInt *idx, i, start, ncols, nzA, nzB, *cmap, imark; 568925616d81SHong Zhang IS isrowb, iscolb; 56900298fd71SBarry Smith Mat *bseq = NULL; 569125616d81SHong Zhang 569225616d81SHong Zhang PetscFunctionBegin; 569320f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 569420f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 56959566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAcols, A, B, 0, 0)); 569625616d81SHong Zhang 569725616d81SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5698d0f46423SBarry Smith start = A->cmap->rstart; 569925616d81SHong Zhang cmap = a->garray; 5700d0f46423SBarry Smith nzA = a->A->cmap->n; 5701d0f46423SBarry Smith nzB = a->B->cmap->n; 57029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nzA + nzB, &idx)); 570325616d81SHong Zhang ncols = 0; 57040390132cSHong Zhang for (i = 0; i < nzB; i++) { /* row < local row index */ 570525616d81SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 570625616d81SHong Zhang else break; 570725616d81SHong Zhang } 570825616d81SHong Zhang imark = i; 57090390132cSHong Zhang for (i = 0; i < nzA; i++) idx[ncols++] = start + i; /* local rows */ 57100390132cSHong Zhang for (i = imark; i < nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 57119566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(PETSC_COMM_SELF, ncols, idx, PETSC_OWN_POINTER, &isrowb)); 57129566063dSJacob Faibussowitsch PetscCall(ISCreateStride(PETSC_COMM_SELF, B->cmap->N, 0, 1, &iscolb)); 571325616d81SHong Zhang } else { 571408401ef6SPierre Jolivet PetscCheck(rowb && colb, PETSC_COMM_SELF, PETSC_ERR_SUP, "IS rowb and colb must be provided for MAT_REUSE_MATRIX"); 57159371c9d4SSatish Balay isrowb = *rowb; 57169371c9d4SSatish Balay iscolb = *colb; 57179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(1, &bseq)); 571825616d81SHong Zhang bseq[0] = *B_seq; 571925616d81SHong Zhang } 57209566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices(B, 1, &isrowb, &iscolb, scall, &bseq)); 572125616d81SHong Zhang *B_seq = bseq[0]; 57229566063dSJacob Faibussowitsch PetscCall(PetscFree(bseq)); 572325616d81SHong Zhang if (!rowb) { 57249566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrowb)); 572525616d81SHong Zhang } else { 572625616d81SHong Zhang *rowb = isrowb; 572725616d81SHong Zhang } 572825616d81SHong Zhang if (!colb) { 57299566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscolb)); 573025616d81SHong Zhang } else { 573125616d81SHong Zhang *colb = iscolb; 573225616d81SHong Zhang } 57339566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAcols, A, B, 0, 0)); 57343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 573525616d81SHong Zhang } 5736429d309bSHong Zhang 5737f8487c73SHong Zhang /* 573827430b45SBarry Smith MatGetBrowsOfAoCols_MPIAIJ - Creates a `MATSEQAIJ` matrix by taking rows of B that equal to nonzero columns 573901b7ae99SHong Zhang of the OFF-DIAGONAL portion of local A 5740429d309bSHong Zhang 5741c3339decSBarry Smith Collective 5742429d309bSHong Zhang 5743429d309bSHong Zhang Input Parameters: 574427430b45SBarry Smith + A,B - the matrices in `MATMPIAIJ` format 574527430b45SBarry Smith - scall - either `MAT_INITIAL_MATRIX` or `MAT_REUSE_MATRIX` 5746429d309bSHong Zhang 5747429d309bSHong Zhang Output Parameter: 57480298fd71SBarry Smith + startsj_s - starting point in B's sending j-arrays, saved for MAT_REUSE (or NULL) 57490298fd71SBarry Smith . startsj_r - starting point in B's receiving j-arrays, saved for MAT_REUSE (or NULL) 57500298fd71SBarry Smith . bufa_ptr - array for sending matrix values, saved for MAT_REUSE (or NULL) 5751598bc09dSHong Zhang - B_oth - the sequential matrix generated with size aBn=a->B->cmap->n by B->cmap->N 5752429d309bSHong Zhang 575311a5261eSBarry Smith Developer Note: 575411a5261eSBarry Smith This directly accesses information inside the VecScatter associated with the matrix-vector product 57556eb45d04SBarry Smith for this matrix. This is not desirable.. 57566eb45d04SBarry Smith 5757429d309bSHong Zhang Level: developer 5758429d309bSHong Zhang 5759f8487c73SHong Zhang */ 57606497c311SBarry Smith 5761d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetBrowsOfAoCols_MPIAIJ(Mat A, Mat B, MatReuse scall, PetscInt **startsj_s, PetscInt **startsj_r, MatScalar **bufa_ptr, Mat *B_oth) 5762d71ae5a4SJacob Faibussowitsch { 5763899cda47SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 57644b8d542aSHong Zhang VecScatter ctx; 5765ce94432eSBarry Smith MPI_Comm comm; 57663515ee7fSJunchao Zhang const PetscMPIInt *rprocs, *sprocs; 57676497c311SBarry Smith PetscMPIInt nrecvs, nsends; 57683515ee7fSJunchao Zhang const PetscInt *srow, *rstarts, *sstarts; 5769277f51e8SBarry Smith PetscInt *rowlen, *bufj, *bufJ, ncols = 0, aBn = a->B->cmap->n, row, *b_othi, *b_othj, *rvalues = NULL, *svalues = NULL, *cols, sbs, rbs; 57706497c311SBarry Smith PetscInt i, j, k = 0, l, ll, nrows, *rstartsj = NULL, *sstartsj, len; 5771277f51e8SBarry Smith PetscScalar *b_otha, *bufa, *bufA, *vals = NULL; 5772ddea5d60SJunchao Zhang MPI_Request *reqs = NULL, *rwaits = NULL, *swaits = NULL; 5773ddea5d60SJunchao Zhang PetscMPIInt size, tag, rank, nreqs; 5774429d309bSHong Zhang 5775429d309bSHong Zhang PetscFunctionBegin; 57769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 57779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 5778a7c7454dSHong Zhang 577920f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 578020f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 57819566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_GetBrowsOfAocols, A, B, 0, 0)); 57829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5783a6b2eed2SHong Zhang 5784ec07b8f8SHong Zhang if (size == 1) { 5785ec07b8f8SHong Zhang startsj_s = NULL; 5786ec07b8f8SHong Zhang bufa_ptr = NULL; 578752f7967eSHong Zhang *B_oth = NULL; 57883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5789ec07b8f8SHong Zhang } 5790ec07b8f8SHong Zhang 5791fa83eaafSHong Zhang ctx = a->Mvctx; 57924b8d542aSHong Zhang tag = ((PetscObject)ctx)->tag; 57934b8d542aSHong Zhang 57949566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &srow, &sprocs, &sbs)); 57953515ee7fSJunchao Zhang /* rprocs[] must be ordered so that indices received from them are ordered in rvalues[], which is key to algorithms used in this subroutine */ 57969566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL /*indices not needed*/, &rprocs, &rbs)); 57979566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends + nrecvs, &nreqs)); 57989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nreqs, &reqs)); 5799ddea5d60SJunchao Zhang rwaits = reqs; 58008e3a54c0SPierre Jolivet swaits = PetscSafePointerPlusOffset(reqs, nrecvs); 5801429d309bSHong Zhang 5802b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) scall = MAT_INITIAL_MATRIX; 5803429d309bSHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5804a6b2eed2SHong Zhang /* i-array */ 5805a6b2eed2SHong Zhang /* post receives */ 58069566063dSJacob Faibussowitsch if (nrecvs) PetscCall(PetscMalloc1(rbs * (rstarts[nrecvs] - rstarts[0]), &rvalues)); /* rstarts can be NULL when nrecvs=0 */ 5807a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 580874268593SBarry Smith rowlen = rvalues + rstarts[i] * rbs; 5809e42f35eeSHong Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of indices to be received */ 58106497c311SBarry Smith PetscCallMPI(MPIU_Irecv(rowlen, nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5811429d309bSHong Zhang } 5812a6b2eed2SHong Zhang 5813a6b2eed2SHong Zhang /* pack the outgoing message */ 58149566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nsends + 1, &sstartsj, nrecvs + 1, &rstartsj)); 58152205254eSKarl Rupp 58162205254eSKarl Rupp sstartsj[0] = 0; 58172205254eSKarl Rupp rstartsj[0] = 0; 5818a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be sent */ 58193515ee7fSJunchao Zhang if (nsends) { 58203515ee7fSJunchao Zhang k = sstarts[0]; /* ATTENTION: sstarts[0] and rstarts[0] are not necessarily zero */ 58219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sbs * (sstarts[nsends] - sstarts[0]), &svalues)); 58223515ee7fSJunchao Zhang } 5823a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 58243515ee7fSJunchao Zhang rowlen = svalues + (sstarts[i] - sstarts[0]) * sbs; 5825e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 582687025532SHong Zhang for (j = 0; j < nrows; j++) { 5827d0f46423SBarry Smith row = srow[k] + B->rmap->range[rank]; /* global row idx */ 5828e42f35eeSHong Zhang for (l = 0; l < sbs; l++) { 58299566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); /* rowlength */ 58302205254eSKarl Rupp 5831e42f35eeSHong Zhang rowlen[j * sbs + l] = ncols; 58322205254eSKarl Rupp 5833e42f35eeSHong Zhang len += ncols; 58349566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + l, &ncols, NULL, NULL)); 5835e42f35eeSHong Zhang } 5836a6b2eed2SHong Zhang k++; 5837429d309bSHong Zhang } 58386497c311SBarry Smith PetscCallMPI(MPIU_Isend(rowlen, nrows * sbs, MPIU_INT, sprocs[i], tag, comm, swaits + i)); 58392205254eSKarl Rupp 5840dea91ad1SHong Zhang sstartsj[i + 1] = len; /* starting point of (i+1)-th outgoing msg in bufj and bufa */ 5841429d309bSHong Zhang } 584287025532SHong Zhang /* recvs and sends of i-array are completed */ 58439566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 58449566063dSJacob Faibussowitsch PetscCall(PetscFree(svalues)); 5845e42f35eeSHong Zhang 5846a6b2eed2SHong Zhang /* allocate buffers for sending j and a arrays */ 584784648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &bufj)); 584884648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &bufa)); 5849a6b2eed2SHong Zhang 585087025532SHong Zhang /* create i-array of B_oth */ 585184648c2dSPierre Jolivet PetscCall(PetscMalloc1(aBn + 1, &b_othi)); 58522205254eSKarl Rupp 585387025532SHong Zhang b_othi[0] = 0; 5854a6b2eed2SHong Zhang len = 0; /* total length of j or a array to be received */ 5855a6b2eed2SHong Zhang k = 0; 5856a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 58573515ee7fSJunchao Zhang rowlen = rvalues + (rstarts[i] - rstarts[0]) * rbs; 58583515ee7fSJunchao Zhang nrows = (rstarts[i + 1] - rstarts[i]) * rbs; /* num of rows to be received */ 585987025532SHong Zhang for (j = 0; j < nrows; j++) { 586087025532SHong Zhang b_othi[k + 1] = b_othi[k] + rowlen[j]; 58619566063dSJacob Faibussowitsch PetscCall(PetscIntSumError(rowlen[j], len, &len)); 5862f91af8c7SBarry Smith k++; 5863a6b2eed2SHong Zhang } 5864dea91ad1SHong Zhang rstartsj[i + 1] = len; /* starting point of (i+1)-th incoming msg in bufj and bufa */ 5865a6b2eed2SHong Zhang } 58669566063dSJacob Faibussowitsch PetscCall(PetscFree(rvalues)); 5867a6b2eed2SHong Zhang 58686aad120cSJose E. Roman /* allocate space for j and a arrays of B_oth */ 586984648c2dSPierre Jolivet PetscCall(PetscMalloc1(b_othi[aBn], &b_othj)); 587084648c2dSPierre Jolivet PetscCall(PetscMalloc1(b_othi[aBn], &b_otha)); 5871a6b2eed2SHong Zhang 587287025532SHong Zhang /* j-array */ 5873a6b2eed2SHong Zhang /* post receives of j-array */ 5874a6b2eed2SHong Zhang for (i = 0; i < nrecvs; i++) { 587587025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 587684648c2dSPierre Jolivet PetscCallMPI(MPIU_Irecv(PetscSafePointerPlusOffset(b_othj, rstartsj[i]), nrows, MPIU_INT, rprocs[i], tag, comm, rwaits + i)); 5877a6b2eed2SHong Zhang } 5878e42f35eeSHong Zhang 5879e42f35eeSHong Zhang /* pack the outgoing message j-array */ 58803515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 5881a6b2eed2SHong Zhang for (i = 0; i < nsends; i++) { 5882e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 588384648c2dSPierre Jolivet bufJ = PetscSafePointerPlusOffset(bufj, sstartsj[i]); 588487025532SHong Zhang for (j = 0; j < nrows; j++) { 5885d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5886e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 58879566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5888ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufJ++ = cols[l]; 58899566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, &cols, NULL)); 5890e42f35eeSHong Zhang } 589187025532SHong Zhang } 589284648c2dSPierre Jolivet PetscCallMPI(MPIU_Isend(PetscSafePointerPlusOffset(bufj, sstartsj[i]), sstartsj[i + 1] - sstartsj[i], MPIU_INT, sprocs[i], tag, comm, swaits + i)); 589387025532SHong Zhang } 589487025532SHong Zhang 589587025532SHong Zhang /* recvs and sends of j-array are completed */ 58969566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 589787025532SHong Zhang } else if (scall == MAT_REUSE_MATRIX) { 5898b7f45c76SHong Zhang sstartsj = *startsj_s; 58991d79065fSBarry Smith rstartsj = *startsj_r; 590087025532SHong Zhang bufa = *bufa_ptr; 59019566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayWrite(*B_oth, &b_otha)); 5902ddea5d60SJunchao Zhang } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Matrix P does not possess an object container"); 590387025532SHong Zhang 590487025532SHong Zhang /* a-array */ 590587025532SHong Zhang /* post receives of a-array */ 590687025532SHong Zhang for (i = 0; i < nrecvs; i++) { 590787025532SHong Zhang nrows = rstartsj[i + 1] - rstartsj[i]; /* length of the msg received */ 590884648c2dSPierre Jolivet PetscCallMPI(MPIU_Irecv(PetscSafePointerPlusOffset(b_otha, rstartsj[i]), nrows, MPIU_SCALAR, rprocs[i], tag, comm, rwaits + i)); 590987025532SHong Zhang } 5910e42f35eeSHong Zhang 5911e42f35eeSHong Zhang /* pack the outgoing message a-array */ 59123515ee7fSJunchao Zhang if (nsends) k = sstarts[0]; 591387025532SHong Zhang for (i = 0; i < nsends; i++) { 5914e42f35eeSHong Zhang nrows = sstarts[i + 1] - sstarts[i]; /* num of block rows */ 591584648c2dSPierre Jolivet bufA = PetscSafePointerPlusOffset(bufa, sstartsj[i]); 591687025532SHong Zhang for (j = 0; j < nrows; j++) { 5917d0f46423SBarry Smith row = srow[k++] + B->rmap->range[rank]; /* global row idx */ 5918e42f35eeSHong Zhang for (ll = 0; ll < sbs; ll++) { 59199566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5920ad540459SPierre Jolivet for (l = 0; l < ncols; l++) *bufA++ = vals[l]; 59219566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIAIJ(B, row + ll, &ncols, NULL, &vals)); 5922e42f35eeSHong Zhang } 5923a6b2eed2SHong Zhang } 592484648c2dSPierre Jolivet PetscCallMPI(MPIU_Isend(PetscSafePointerPlusOffset(bufa, sstartsj[i]), sstartsj[i + 1] - sstartsj[i], MPIU_SCALAR, sprocs[i], tag, comm, swaits + i)); 5925a6b2eed2SHong Zhang } 592687025532SHong Zhang /* recvs and sends of a-array are completed */ 59279566063dSJacob Faibussowitsch if (nreqs) PetscCallMPI(MPI_Waitall(nreqs, reqs, MPI_STATUSES_IGNORE)); 59289566063dSJacob Faibussowitsch PetscCall(PetscFree(reqs)); 5929a6b2eed2SHong Zhang 593087025532SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 5931dd460d27SBarry Smith Mat_SeqAIJ *b_oth; 5932dd460d27SBarry Smith 5933a6b2eed2SHong Zhang /* put together the new matrix */ 59349566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, aBn, B->cmap->N, b_othi, b_othj, b_otha, B_oth)); 5935a6b2eed2SHong Zhang 5936a6b2eed2SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 5937a6b2eed2SHong Zhang /* Since these are PETSc arrays, change flags to free them as necessary. */ 593887025532SHong Zhang b_oth = (Mat_SeqAIJ *)(*B_oth)->data; 5939e6b907acSBarry Smith b_oth->free_a = PETSC_TRUE; 5940e6b907acSBarry Smith b_oth->free_ij = PETSC_TRUE; 594187025532SHong Zhang b_oth->nonew = 0; 5942a6b2eed2SHong Zhang 59439566063dSJacob Faibussowitsch PetscCall(PetscFree(bufj)); 5944b7f45c76SHong Zhang if (!startsj_s || !bufa_ptr) { 59459566063dSJacob Faibussowitsch PetscCall(PetscFree2(sstartsj, rstartsj)); 59469566063dSJacob Faibussowitsch PetscCall(PetscFree(bufa_ptr)); 5947dea91ad1SHong Zhang } else { 5948b7f45c76SHong Zhang *startsj_s = sstartsj; 59491d79065fSBarry Smith *startsj_r = rstartsj; 595087025532SHong Zhang *bufa_ptr = bufa; 595187025532SHong Zhang } 5952fff043a9SJunchao Zhang } else if (scall == MAT_REUSE_MATRIX) { 59539566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayWrite(*B_oth, &b_otha)); 5954dea91ad1SHong Zhang } 59553515ee7fSJunchao Zhang 59569566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE, &nsends, &sstarts, &srow, &sprocs, &sbs)); 59579566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE, &nrecvs, &rstarts, NULL, &rprocs, &rbs)); 59589566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_GetBrowsOfAocols, A, B, 0, 0)); 59593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5960429d309bSHong Zhang } 5961ccd8e176SBarry Smith 5962cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCRL(Mat, MatType, MatReuse, Mat *); 5963cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJPERM(Mat, MatType, MatReuse, Mat *); 5964ca9cdca7SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJSELL(Mat, MatType, MatReuse, Mat *); 59659779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 5966a84739b8SRichard Tran Mills PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJMKL(Mat, MatType, MatReuse, Mat *); 5967191b95cbSRichard Tran Mills #endif 5968ae8d29abSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIBAIJ(Mat, MatType, MatReuse, Mat *); 5969cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 59705d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5971cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_Elemental(Mat, MatType, MatReuse, Mat *); 59725d7652ecSHong Zhang #endif 5973d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE)) 5974d24d4204SJose E. Roman PETSC_INTERN PetscErrorCode MatConvert_AIJ_ScaLAPACK(Mat, MatType, MatReuse, Mat *); 5975d24d4204SJose E. Roman #endif 597663c07aadSStefano Zampini #if defined(PETSC_HAVE_HYPRE) 597763c07aadSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 597863c07aadSStefano Zampini #endif 59793338378cSStefano Zampini #if defined(PETSC_HAVE_CUDA) 59803338378cSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJCUSPARSE(Mat, MatType, MatReuse, Mat *); 59813338378cSStefano Zampini #endif 5982d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 5983d5e393b6SSuyash Tandon PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJHIPSPARSE(Mat, MatType, MatReuse, Mat *); 5984d5e393b6SSuyash Tandon #endif 59853d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 59863d0639e7SStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIAIJKokkos(Mat, MatType, MatReuse, Mat *); 59873d0639e7SStefano Zampini #endif 5988d4002b98SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPISELL(Mat, MatType, MatReuse, Mat *); 59894222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 59904222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_IS_XAIJ(Mat); 599117667f90SBarry Smith 5992fc4dec0aSBarry Smith /* 5993fc4dec0aSBarry Smith Computes (B'*A')' since computing B*A directly is untenable 5994fc4dec0aSBarry Smith 5995fc4dec0aSBarry Smith n p p 59962da392ccSBarry Smith [ ] [ ] [ ] 59972da392ccSBarry Smith m [ A ] * n [ B ] = m [ C ] 59982da392ccSBarry Smith [ ] [ ] [ ] 5999fc4dec0aSBarry Smith 6000fc4dec0aSBarry Smith */ 6001d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIDense_MPIAIJ(Mat A, Mat B, Mat C) 6002d71ae5a4SJacob Faibussowitsch { 6003fc4dec0aSBarry Smith Mat At, Bt, Ct; 6004fc4dec0aSBarry Smith 6005fc4dec0aSBarry Smith PetscFunctionBegin; 60069566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 60079566063dSJacob Faibussowitsch PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &Bt)); 6008fb842aefSJose E. Roman PetscCall(MatMatMult(Bt, At, MAT_INITIAL_MATRIX, PETSC_CURRENT, &Ct)); 60099566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 60109566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 60117fb60732SBarry Smith PetscCall(MatTransposeSetPrecursor(Ct, C)); 60129566063dSJacob Faibussowitsch PetscCall(MatTranspose(Ct, MAT_REUSE_MATRIX, &C)); 60139566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Ct)); 60143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6015fc4dec0aSBarry Smith } 6016fc4dec0aSBarry Smith 6017d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIAIJ(Mat A, Mat B, PetscReal fill, Mat C) 6018d71ae5a4SJacob Faibussowitsch { 60196718818eSStefano Zampini PetscBool cisdense; 6020fc4dec0aSBarry Smith 6021fc4dec0aSBarry Smith PetscFunctionBegin; 602208401ef6SPierre Jolivet PetscCheck(A->cmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "A->cmap->n %" PetscInt_FMT " != B->rmap->n %" PetscInt_FMT, A->cmap->n, B->rmap->n); 60239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 60249566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6025d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, MATMPIDENSEHIP, "")); 602648a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 60279566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 6028f75ecaa4SHong Zhang 60294222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIAIJ; 60303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6031fc4dec0aSBarry Smith } 6032fc4dec0aSBarry Smith 6033d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ_AB(Mat C) 6034d71ae5a4SJacob Faibussowitsch { 60354222ddf1SHong Zhang Mat_Product *product = C->product; 60364222ddf1SHong Zhang Mat A = product->A, B = product->B; 6037fc4dec0aSBarry Smith 6038fc4dec0aSBarry Smith PetscFunctionBegin; 603920f4b53cSBarry Smith PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 604020f4b53cSBarry Smith A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 60414222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIAIJ; 60424222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 60433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6044fc4dec0aSBarry Smith } 6045fc4dec0aSBarry Smith 6046d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense_MPIAIJ(Mat C) 6047d71ae5a4SJacob Faibussowitsch { 60484222ddf1SHong Zhang Mat_Product *product = C->product; 60494222ddf1SHong Zhang 60504222ddf1SHong Zhang PetscFunctionBegin; 605148a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_MPIDense_MPIAIJ_AB(C)); 60523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 60534222ddf1SHong Zhang } 6054394ed5ebSJunchao Zhang 605527430b45SBarry Smith /* 605627430b45SBarry Smith Merge two sets of sorted nonzeros and return a CSR for the merged (sequential) matrix 6057394ed5ebSJunchao Zhang 6058394ed5ebSJunchao Zhang Input Parameters: 6059394ed5ebSJunchao Zhang 6060651b1cf9SStefano Zampini j1,rowBegin1,rowEnd1,jmap1: describe the first set of nonzeros (Set1) 6061651b1cf9SStefano Zampini j2,rowBegin2,rowEnd2,jmap2: describe the second set of nonzeros (Set2) 6062394ed5ebSJunchao Zhang 6063158ec288SJunchao Zhang mat: both sets' nonzeros are on m rows, where m is the number of local rows of the matrix mat 6064394ed5ebSJunchao Zhang 6065394ed5ebSJunchao Zhang For Set1, j1[] contains column indices of the nonzeros. 6066394ed5ebSJunchao Zhang For the k-th row (0<=k<m), [rowBegin1[k],rowEnd1[k]) index into j1[] and point to the begin/end nonzero in row k 6067394ed5ebSJunchao Zhang respectively (note rowEnd1[k] is not necessarily equal to rwoBegin1[k+1]). Indices in this range of j1[] are sorted, 6068394ed5ebSJunchao Zhang but might have repeats. jmap1[t+1] - jmap1[t] is the number of repeats for the t-th unique nonzero in Set1. 6069394ed5ebSJunchao Zhang 6070394ed5ebSJunchao Zhang Similar for Set2. 6071394ed5ebSJunchao Zhang 6072394ed5ebSJunchao Zhang This routine merges the two sets of nonzeros row by row and removes repeats. 6073394ed5ebSJunchao Zhang 6074158ec288SJunchao Zhang Output Parameters: (memory is allocated by the caller) 6075394ed5ebSJunchao Zhang 6076394ed5ebSJunchao Zhang i[],j[]: the CSR of the merged matrix, which has m rows. 6077394ed5ebSJunchao Zhang imap1[]: the k-th unique nonzero in Set1 (k=0,1,...) corresponds to imap1[k]-th unique nonzero in the merged matrix. 6078394ed5ebSJunchao Zhang imap2[]: similar to imap1[], but for Set2. 6079394ed5ebSJunchao Zhang Note we order nonzeros row-by-row and from left to right. 6080394ed5ebSJunchao Zhang */ 6081d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMergeEntries_Internal(Mat mat, const PetscInt j1[], const PetscInt j2[], const PetscCount rowBegin1[], const PetscCount rowEnd1[], const PetscCount rowBegin2[], const PetscCount rowEnd2[], const PetscCount jmap1[], const PetscCount jmap2[], PetscCount imap1[], PetscCount imap2[], PetscInt i[], PetscInt j[]) 6082d71ae5a4SJacob Faibussowitsch { 6083394ed5ebSJunchao Zhang PetscInt r, m; /* Row index of mat */ 6084394ed5ebSJunchao Zhang PetscCount t, t1, t2, b1, e1, b2, e2; 6085394ed5ebSJunchao Zhang 6086394ed5ebSJunchao Zhang PetscFunctionBegin; 60879566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, NULL)); 6088394ed5ebSJunchao Zhang t1 = t2 = t = 0; /* Count unique nonzeros of in Set1, Set1 and the merged respectively */ 6089394ed5ebSJunchao Zhang i[0] = 0; 6090394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { /* Do row by row merging */ 6091394ed5ebSJunchao Zhang b1 = rowBegin1[r]; 6092394ed5ebSJunchao Zhang e1 = rowEnd1[r]; 6093394ed5ebSJunchao Zhang b2 = rowBegin2[r]; 6094394ed5ebSJunchao Zhang e2 = rowEnd2[r]; 6095394ed5ebSJunchao Zhang while (b1 < e1 && b2 < e2) { 6096394ed5ebSJunchao Zhang if (j1[b1] == j2[b2]) { /* Same column index and hence same nonzero */ 6097394ed5ebSJunchao Zhang j[t] = j1[b1]; 6098394ed5ebSJunchao Zhang imap1[t1] = t; 6099394ed5ebSJunchao Zhang imap2[t2] = t; 6100394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; /* Jump to next unique local nonzero */ 6101394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; /* Jump to next unique remote nonzero */ 61029371c9d4SSatish Balay t1++; 61039371c9d4SSatish Balay t2++; 61049371c9d4SSatish Balay t++; 6105394ed5ebSJunchao Zhang } else if (j1[b1] < j2[b2]) { 6106394ed5ebSJunchao Zhang j[t] = j1[b1]; 6107394ed5ebSJunchao Zhang imap1[t1] = t; 6108394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61099371c9d4SSatish Balay t1++; 61109371c9d4SSatish Balay t++; 6111394ed5ebSJunchao Zhang } else { 6112394ed5ebSJunchao Zhang j[t] = j2[b2]; 6113394ed5ebSJunchao Zhang imap2[t2] = t; 6114394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61159371c9d4SSatish Balay t2++; 61169371c9d4SSatish Balay t++; 6117394ed5ebSJunchao Zhang } 6118394ed5ebSJunchao Zhang } 6119394ed5ebSJunchao Zhang /* Merge the remaining in either j1[] or j2[] */ 6120394ed5ebSJunchao Zhang while (b1 < e1) { 6121394ed5ebSJunchao Zhang j[t] = j1[b1]; 6122394ed5ebSJunchao Zhang imap1[t1] = t; 6123394ed5ebSJunchao Zhang b1 += jmap1[t1 + 1] - jmap1[t1]; 61249371c9d4SSatish Balay t1++; 61259371c9d4SSatish Balay t++; 6126394ed5ebSJunchao Zhang } 6127394ed5ebSJunchao Zhang while (b2 < e2) { 6128394ed5ebSJunchao Zhang j[t] = j2[b2]; 6129394ed5ebSJunchao Zhang imap2[t2] = t; 6130394ed5ebSJunchao Zhang b2 += jmap2[t2 + 1] - jmap2[t2]; 61319371c9d4SSatish Balay t2++; 61329371c9d4SSatish Balay t++; 6133394ed5ebSJunchao Zhang } 61346497c311SBarry Smith PetscCall(PetscIntCast(t, i + r + 1)); 6135394ed5ebSJunchao Zhang } 61363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6137394ed5ebSJunchao Zhang } 6138394ed5ebSJunchao Zhang 613927430b45SBarry Smith /* 614027430b45SBarry Smith Split nonzeros in a block of local rows into two subsets: those in the diagonal block and those in the off-diagonal block 6141394ed5ebSJunchao Zhang 6142394ed5ebSJunchao Zhang Input Parameters: 6143394ed5ebSJunchao Zhang mat: an MPI matrix that provides row and column layout information for splitting. Let's say its number of local rows is m. 6144394ed5ebSJunchao Zhang n,i[],j[],perm[]: there are n input entries, belonging to m rows. Row/col indices of the entries are stored in i[] and j[] 6145394ed5ebSJunchao Zhang respectively, along with a permutation array perm[]. Length of the i[],j[],perm[] arrays is n. 6146394ed5ebSJunchao Zhang 6147394ed5ebSJunchao Zhang i[] is already sorted, but within a row, j[] is not sorted and might have repeats. 6148394ed5ebSJunchao Zhang i[] might contain negative indices at the beginning, which means the corresponding entries should be ignored in the splitting. 6149394ed5ebSJunchao Zhang 6150394ed5ebSJunchao Zhang Output Parameters: 6151394ed5ebSJunchao Zhang j[],perm[]: the routine needs to sort j[] within each row along with perm[]. 6152394ed5ebSJunchao Zhang rowBegin[],rowMid[],rowEnd[]: of length m, and the memory is preallocated and zeroed by the caller. 6153394ed5ebSJunchao Zhang They contain indices pointing to j[]. For 0<=r<m, [rowBegin[r],rowMid[r]) point to begin/end entries of row r of the diagonal block, 6154394ed5ebSJunchao Zhang and [rowMid[r],rowEnd[r]) point to begin/end entries of row r of the off-diagonal block. 6155394ed5ebSJunchao Zhang 6156394ed5ebSJunchao Zhang Aperm[],Ajmap[],Atot,Annz: Arrays are allocated by this routine. 6157158ec288SJunchao Zhang Atot: number of entries belonging to the diagonal block. 6158158ec288SJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6159394ed5ebSJunchao Zhang Aperm[Atot] stores values from perm[] for entries belonging to the diagonal block. Length of Aperm[] is Atot, though it may also count 6160394ed5ebSJunchao Zhang repeats (i.e., same 'i,j' pair). 6161394ed5ebSJunchao Zhang Ajmap[Annz+1] stores the number of repeats of each unique entry belonging to the diagonal block. More precisely, Ajmap[t+1] - Ajmap[t] 6162394ed5ebSJunchao Zhang is the number of repeats for the t-th unique entry in the diagonal block. Ajmap[0] is always 0. 6163394ed5ebSJunchao Zhang 6164394ed5ebSJunchao Zhang Atot: number of entries belonging to the diagonal block 6165394ed5ebSJunchao Zhang Annz: number of unique nonzeros belonging to the diagonal block. 6166394ed5ebSJunchao Zhang 6167394ed5ebSJunchao Zhang Bperm[], Bjmap[], Btot, Bnnz are similar but for the off-diagonal block. 6168394ed5ebSJunchao Zhang 6169158ec288SJunchao Zhang Aperm[],Bperm[],Ajmap[] and Bjmap[] are allocated separately by this routine with PetscMalloc1(). 6170394ed5ebSJunchao Zhang */ 6171d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSplitEntries_Internal(Mat mat, PetscCount n, const PetscInt i[], PetscInt j[], PetscCount perm[], PetscCount rowBegin[], PetscCount rowMid[], PetscCount rowEnd[], PetscCount *Atot_, PetscCount **Aperm_, PetscCount *Annz_, PetscCount **Ajmap_, PetscCount *Btot_, PetscCount **Bperm_, PetscCount *Bnnz_, PetscCount **Bjmap_) 6172d71ae5a4SJacob Faibussowitsch { 6173394ed5ebSJunchao Zhang PetscInt cstart, cend, rstart, rend, row, col; 6174394ed5ebSJunchao Zhang PetscCount Atot = 0, Btot = 0; /* Total number of nonzeros in the diagonal and off-diagonal blocks */ 6175394ed5ebSJunchao Zhang PetscCount Annz = 0, Bnnz = 0; /* Number of unique nonzeros in the diagonal and off-diagonal blocks */ 6176394ed5ebSJunchao Zhang PetscCount k, m, p, q, r, s, mid; 6177394ed5ebSJunchao Zhang PetscCount *Aperm, *Bperm, *Ajmap, *Bjmap; 6178394ed5ebSJunchao Zhang 6179394ed5ebSJunchao Zhang PetscFunctionBegin; 61809566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 61819566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 6182394ed5ebSJunchao Zhang m = rend - rstart; 6183394ed5ebSJunchao Zhang 6184651b1cf9SStefano Zampini /* Skip negative rows */ 6185651b1cf9SStefano Zampini for (k = 0; k < n; k++) 61869371c9d4SSatish Balay if (i[k] >= 0) break; 6187394ed5ebSJunchao Zhang 6188394ed5ebSJunchao Zhang /* Process [k,n): sort and partition each local row into diag and offdiag portions, 6189394ed5ebSJunchao Zhang fill rowBegin[], rowMid[], rowEnd[], and count Atot, Btot, Annz, Bnnz. 6190394ed5ebSJunchao Zhang */ 6191394ed5ebSJunchao Zhang while (k < n) { 6192394ed5ebSJunchao Zhang row = i[k]; 6193394ed5ebSJunchao Zhang /* Entries in [k,s) are in one row. Shift diagonal block col indices so that diag is ahead of offdiag after sorting the row */ 61949371c9d4SSatish Balay for (s = k; s < n; s++) 61959371c9d4SSatish Balay if (i[s] != row) break; 6196651b1cf9SStefano Zampini 61971690c2aeSBarry Smith /* Shift diag columns to range of [-PETSC_INT_MAX, -1] */ 6198394ed5ebSJunchao Zhang for (p = k; p < s; p++) { 61991690c2aeSBarry Smith if (j[p] >= cstart && j[p] < cend) j[p] -= PETSC_INT_MAX; 6200394ed5ebSJunchao Zhang } 62019566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithCountArray(s - k, j + k, perm + k)); 6202158ec288SJunchao Zhang PetscCall(PetscSortedIntUpperBound(j, k, s, -1, &mid)); /* Separate [k,s) into [k,mid) for diag and [mid,s) for offdiag */ 6203394ed5ebSJunchao Zhang rowBegin[row - rstart] = k; 6204394ed5ebSJunchao Zhang rowMid[row - rstart] = mid; 6205394ed5ebSJunchao Zhang rowEnd[row - rstart] = s; 62068551dd9cSJunchao Zhang PetscCheck(k == s || j[s - 1] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column index %" PetscInt_FMT " is >= matrix column size %" PetscInt_FMT, j[s - 1], mat->cmap->N); 6207394ed5ebSJunchao Zhang 6208394ed5ebSJunchao Zhang /* Count nonzeros of this diag/offdiag row, which might have repeats */ 6209394ed5ebSJunchao Zhang Atot += mid - k; 6210394ed5ebSJunchao Zhang Btot += s - mid; 6211394ed5ebSJunchao Zhang 6212651b1cf9SStefano Zampini /* Count unique nonzeros of this diag row */ 6213394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6214394ed5ebSJunchao Zhang col = j[p]; 62159371c9d4SSatish Balay do { 62161690c2aeSBarry Smith j[p] += PETSC_INT_MAX; /* Revert the modified diagonal indices */ 62179371c9d4SSatish Balay p++; 6218651b1cf9SStefano Zampini } while (p < mid && j[p] == col); 6219394ed5ebSJunchao Zhang Annz++; 6220394ed5ebSJunchao Zhang } 6221394ed5ebSJunchao Zhang 6222651b1cf9SStefano Zampini /* Count unique nonzeros of this offdiag row */ 6223394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6224394ed5ebSJunchao Zhang col = j[p]; 6225d71ae5a4SJacob Faibussowitsch do { 6226d71ae5a4SJacob Faibussowitsch p++; 6227d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6228394ed5ebSJunchao Zhang Bnnz++; 6229394ed5ebSJunchao Zhang } 6230394ed5ebSJunchao Zhang k = s; 6231394ed5ebSJunchao Zhang } 6232394ed5ebSJunchao Zhang 6233394ed5ebSJunchao Zhang /* Allocation according to Atot, Btot, Annz, Bnnz */ 6234158ec288SJunchao Zhang PetscCall(PetscMalloc1(Atot, &Aperm)); 6235158ec288SJunchao Zhang PetscCall(PetscMalloc1(Btot, &Bperm)); 6236158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap)); 6237158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap)); 6238394ed5ebSJunchao Zhang 62396aad120cSJose E. Roman /* Re-scan indices and copy diag/offdiag permutation indices to Aperm, Bperm and also fill Ajmap and Bjmap */ 6240394ed5ebSJunchao Zhang Ajmap[0] = Bjmap[0] = Atot = Btot = Annz = Bnnz = 0; 6241394ed5ebSJunchao Zhang for (r = 0; r < m; r++) { 6242394ed5ebSJunchao Zhang k = rowBegin[r]; 6243394ed5ebSJunchao Zhang mid = rowMid[r]; 6244394ed5ebSJunchao Zhang s = rowEnd[r]; 62458e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Aperm, Atot), PetscSafePointerPlusOffset(perm, k), mid - k)); 62468e3a54c0SPierre Jolivet PetscCall(PetscArraycpy(PetscSafePointerPlusOffset(Bperm, Btot), PetscSafePointerPlusOffset(perm, mid), s - mid)); 6247394ed5ebSJunchao Zhang Atot += mid - k; 6248394ed5ebSJunchao Zhang Btot += s - mid; 6249394ed5ebSJunchao Zhang 6250394ed5ebSJunchao Zhang /* Scan column indices in this row and find out how many repeats each unique nonzero has */ 6251394ed5ebSJunchao Zhang for (p = k; p < mid;) { 6252394ed5ebSJunchao Zhang col = j[p]; 6253394ed5ebSJunchao Zhang q = p; 6254d71ae5a4SJacob Faibussowitsch do { 6255d71ae5a4SJacob Faibussowitsch p++; 6256d71ae5a4SJacob Faibussowitsch } while (p < mid && j[p] == col); 6257394ed5ebSJunchao Zhang Ajmap[Annz + 1] = Ajmap[Annz] + (p - q); 6258394ed5ebSJunchao Zhang Annz++; 6259394ed5ebSJunchao Zhang } 6260394ed5ebSJunchao Zhang 6261394ed5ebSJunchao Zhang for (p = mid; p < s;) { 6262394ed5ebSJunchao Zhang col = j[p]; 6263394ed5ebSJunchao Zhang q = p; 6264d71ae5a4SJacob Faibussowitsch do { 6265d71ae5a4SJacob Faibussowitsch p++; 6266d71ae5a4SJacob Faibussowitsch } while (p < s && j[p] == col); 6267394ed5ebSJunchao Zhang Bjmap[Bnnz + 1] = Bjmap[Bnnz] + (p - q); 6268394ed5ebSJunchao Zhang Bnnz++; 6269394ed5ebSJunchao Zhang } 6270394ed5ebSJunchao Zhang } 6271394ed5ebSJunchao Zhang /* Output */ 6272394ed5ebSJunchao Zhang *Aperm_ = Aperm; 6273394ed5ebSJunchao Zhang *Annz_ = Annz; 6274394ed5ebSJunchao Zhang *Atot_ = Atot; 6275394ed5ebSJunchao Zhang *Ajmap_ = Ajmap; 6276394ed5ebSJunchao Zhang *Bperm_ = Bperm; 6277394ed5ebSJunchao Zhang *Bnnz_ = Bnnz; 6278394ed5ebSJunchao Zhang *Btot_ = Btot; 6279394ed5ebSJunchao Zhang *Bjmap_ = Bjmap; 62803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6281394ed5ebSJunchao Zhang } 6282394ed5ebSJunchao Zhang 628327430b45SBarry Smith /* 628427430b45SBarry Smith Expand the jmap[] array to make a new one in view of nonzeros in the merged matrix 6285158ec288SJunchao Zhang 6286158ec288SJunchao Zhang Input Parameters: 6287158ec288SJunchao Zhang nnz1: number of unique nonzeros in a set that was used to produce imap[], jmap[] 6288158ec288SJunchao Zhang nnz: number of unique nonzeros in the merged matrix 6289158ec288SJunchao Zhang imap[nnz1]: i-th nonzero in the set is the imap[i]-th nonzero in the merged matrix 6290651b1cf9SStefano Zampini jmap[nnz1+1]: i-th nonzero in the set has jmap[i+1] - jmap[i] repeats in the set 6291158ec288SJunchao Zhang 6292158ec288SJunchao Zhang Output Parameter: (memory is allocated by the caller) 6293158ec288SJunchao Zhang jmap_new[nnz+1]: i-th nonzero in the merged matrix has jmap_new[i+1] - jmap_new[i] repeats in the set 6294158ec288SJunchao Zhang 6295158ec288SJunchao Zhang Example: 6296158ec288SJunchao Zhang nnz1 = 4 6297158ec288SJunchao Zhang nnz = 6 6298158ec288SJunchao Zhang imap = [1,3,4,5] 6299158ec288SJunchao Zhang jmap = [0,3,5,6,7] 6300158ec288SJunchao Zhang then, 6301158ec288SJunchao Zhang jmap_new = [0,0,3,3,5,6,7] 6302158ec288SJunchao Zhang */ 6303d71ae5a4SJacob Faibussowitsch static PetscErrorCode ExpandJmap_Internal(PetscCount nnz1, PetscCount nnz, const PetscCount imap[], const PetscCount jmap[], PetscCount jmap_new[]) 6304d71ae5a4SJacob Faibussowitsch { 6305158ec288SJunchao Zhang PetscCount k, p; 6306158ec288SJunchao Zhang 6307158ec288SJunchao Zhang PetscFunctionBegin; 6308158ec288SJunchao Zhang jmap_new[0] = 0; 6309158ec288SJunchao Zhang p = nnz; /* p loops over jmap_new[] backwards */ 6310158ec288SJunchao Zhang for (k = nnz1 - 1; k >= 0; k--) { /* k loops over imap[] */ 6311158ec288SJunchao Zhang for (; p > imap[k]; p--) jmap_new[p] = jmap[k + 1]; 6312158ec288SJunchao Zhang } 6313158ec288SJunchao Zhang for (; p >= 0; p--) jmap_new[p] = jmap[0]; 63143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6315158ec288SJunchao Zhang } 6316158ec288SJunchao Zhang 63172a8381b2SBarry Smith static PetscErrorCode MatCOOStructDestroy_MPIAIJ(PetscCtxRt data) 63182c4ab24aSJunchao Zhang { 63192a8381b2SBarry Smith MatCOOStruct_MPIAIJ *coo = *(MatCOOStruct_MPIAIJ **)data; 63202c4ab24aSJunchao Zhang 63212c4ab24aSJunchao Zhang PetscFunctionBegin; 63222c4ab24aSJunchao Zhang PetscCall(PetscSFDestroy(&coo->sf)); 63232c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm1)); 63242c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm1)); 63252c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap1)); 63262c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap1)); 63272c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aimap2)); 63282c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bimap2)); 63292c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Aperm2)); 63302c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bperm2)); 63312c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Ajmap2)); 63322c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Bjmap2)); 63332c4ab24aSJunchao Zhang PetscCall(PetscFree(coo->Cperm1)); 63342c4ab24aSJunchao Zhang PetscCall(PetscFree2(coo->sendbuf, coo->recvbuf)); 63352c4ab24aSJunchao Zhang PetscCall(PetscFree(coo)); 63362c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 63372c4ab24aSJunchao Zhang } 63382c4ab24aSJunchao Zhang 6339d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetPreallocationCOO_MPIAIJ(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 6340d71ae5a4SJacob Faibussowitsch { 6341394ed5ebSJunchao Zhang MPI_Comm comm; 6342394ed5ebSJunchao Zhang PetscMPIInt rank, size; 6343394ed5ebSJunchao Zhang PetscInt m, n, M, N, rstart, rend, cstart, cend; /* Sizes, indices of row/col, therefore with type PetscInt */ 6344394ed5ebSJunchao Zhang PetscCount k, p, q, rem; /* Loop variables over coo arrays */ 6345394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 63462c4ab24aSJunchao Zhang PetscContainer container; 63472c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6348394ed5ebSJunchao Zhang 6349394ed5ebSJunchao Zhang PetscFunctionBegin; 63509566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->garray)); 63519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 6352cbc6b225SStefano Zampini #if defined(PETSC_USE_CTABLE) 6353eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&mpiaij->colmap)); 6354cbc6b225SStefano Zampini #else 63559566063dSJacob Faibussowitsch PetscCall(PetscFree(mpiaij->colmap)); 6356cbc6b225SStefano Zampini #endif 63579566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&mpiaij->Mvctx)); 6358cbc6b225SStefano Zampini mat->assembled = PETSC_FALSE; 6359cbc6b225SStefano Zampini mat->was_assembled = PETSC_FALSE; 6360cbc6b225SStefano Zampini 63619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 63629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 63639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 63649566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 63659566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 63669566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rstart, &rend)); 63679566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cstart, &cend)); 63689566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 63699566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &M, &N)); 6370394ed5ebSJunchao Zhang 63716aad120cSJose E. Roman /* Sort (i,j) by row along with a permutation array, so that the to-be-ignored */ 6372394ed5ebSJunchao Zhang /* entries come first, then local rows, then remote rows. */ 6373394ed5ebSJunchao Zhang PetscCount n1 = coo_n, *perm1; 6374e8729f6fSJunchao Zhang PetscInt *i1 = coo_i, *j1 = coo_j; 6375e8729f6fSJunchao Zhang 6376e8729f6fSJunchao Zhang PetscCall(PetscMalloc1(n1, &perm1)); 6377394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) perm1[k] = k; 6378394ed5ebSJunchao Zhang 6379394ed5ebSJunchao Zhang /* Manipulate indices so that entries with negative row or col indices will have smallest 6380394ed5ebSJunchao Zhang row indices, local entries will have greater but negative row indices, and remote entries 6381394ed5ebSJunchao Zhang will have positive row indices. 6382394ed5ebSJunchao Zhang */ 6383394ed5ebSJunchao Zhang for (k = 0; k < n1; k++) { 63841690c2aeSBarry Smith if (i1[k] < 0 || j1[k] < 0) i1[k] = PETSC_INT_MIN; /* e.g., -2^31, minimal to move them ahead */ 63851690c2aeSBarry Smith else if (i1[k] >= rstart && i1[k] < rend) i1[k] -= PETSC_INT_MAX; /* e.g., minus 2^31-1 to shift local rows to range of [-PETSC_INT_MAX, -1] */ 6386f7d195e4SLawrence Mitchell else { 6387f7d195e4SLawrence Mitchell PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_USER_INPUT, "MAT_NO_OFF_PROC_ENTRIES is set but insert to remote rows"); 63881690c2aeSBarry Smith if (mpiaij->donotstash) i1[k] = PETSC_INT_MIN; /* Ignore offproc entries as if they had negative indices */ 6389f7d195e4SLawrence Mitchell } 6390394ed5ebSJunchao Zhang } 6391394ed5ebSJunchao Zhang 6392da81f932SPierre Jolivet /* Sort by row; after that, [0,k) have ignored entries, [k,rem) have local rows and [rem,n1) have remote rows */ 63939566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n1, i1, j1, perm1)); 6394651b1cf9SStefano Zampini 6395651b1cf9SStefano Zampini /* Advance k to the first entry we need to take care of */ 6396651b1cf9SStefano Zampini for (k = 0; k < n1; k++) 63971690c2aeSBarry Smith if (i1[k] > PETSC_INT_MIN) break; 63986497c311SBarry Smith PetscCount i1start = k; 6399651b1cf9SStefano Zampini 64001690c2aeSBarry Smith PetscCall(PetscSortedIntUpperBound(i1, k, n1, rend - 1 - PETSC_INT_MAX, &rem)); /* rem is upper bound of the last local row */ 64011690c2aeSBarry Smith for (; k < rem; k++) i1[k] += PETSC_INT_MAX; /* Revert row indices of local rows*/ 6402394ed5ebSJunchao Zhang 64032b35a777SBarry Smith PetscCheck(n1 == 0 || i1[n1 - 1] < M, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "COO row index %" PetscInt_FMT " is >= the matrix row size %" PetscInt_FMT, i1[n1 - 1], M); 64048551dd9cSJunchao Zhang 6405394ed5ebSJunchao Zhang /* Send remote rows to their owner */ 6406394ed5ebSJunchao Zhang /* Find which rows should be sent to which remote ranks*/ 6407394ed5ebSJunchao Zhang PetscInt nsend = 0; /* Number of MPI ranks to send data to */ 6408394ed5ebSJunchao Zhang PetscMPIInt *sendto; /* [nsend], storing remote ranks */ 6409394ed5ebSJunchao Zhang PetscInt *nentries; /* [nsend], storing number of entries sent to remote ranks; Assume PetscInt is big enough for this count, and error if not */ 6410394ed5ebSJunchao Zhang const PetscInt *ranges; 6411394ed5ebSJunchao Zhang PetscInt maxNsend = size >= 128 ? 128 : size; /* Assume max 128 neighbors; realloc when needed */ 6412394ed5ebSJunchao Zhang 64139566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(mat->rmap, &ranges)); 64149566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend, &sendto, maxNsend, &nentries)); 6415394ed5ebSJunchao Zhang for (k = rem; k < n1;) { 6416394ed5ebSJunchao Zhang PetscMPIInt owner; 6417394ed5ebSJunchao Zhang PetscInt firstRow, lastRow; 6418cbc6b225SStefano Zampini 6419394ed5ebSJunchao Zhang /* Locate a row range */ 6420394ed5ebSJunchao Zhang firstRow = i1[k]; /* first row of this owner */ 64219566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(mat->rmap, firstRow, &owner)); 6422394ed5ebSJunchao Zhang lastRow = ranges[owner + 1] - 1; /* last row of this owner */ 6423394ed5ebSJunchao Zhang 64248551dd9cSJunchao Zhang /* Find the first index 'p' in [k,n) with i1[p] belonging to next owner */ 64259566063dSJacob Faibussowitsch PetscCall(PetscSortedIntUpperBound(i1, k, n1, lastRow, &p)); 6426394ed5ebSJunchao Zhang 6427394ed5ebSJunchao Zhang /* All entries in [k,p) belong to this remote owner */ 6428394ed5ebSJunchao Zhang if (nsend >= maxNsend) { /* Double the remote ranks arrays if not long enough */ 6429394ed5ebSJunchao Zhang PetscMPIInt *sendto2; 6430394ed5ebSJunchao Zhang PetscInt *nentries2; 6431394ed5ebSJunchao Zhang PetscInt maxNsend2 = (maxNsend <= size / 2) ? maxNsend * 2 : size; 6432cbc6b225SStefano Zampini 64339566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(maxNsend2, &sendto2, maxNsend2, &nentries2)); 64349566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sendto2, sendto, maxNsend)); 6435*099029b8SHan Liu PetscCall(PetscArraycpy(nentries2, nentries, maxNsend)); 6436*099029b8SHan Liu PetscCall(PetscFree2(sendto, nentries)); 6437394ed5ebSJunchao Zhang sendto = sendto2; 6438394ed5ebSJunchao Zhang nentries = nentries2; 6439394ed5ebSJunchao Zhang maxNsend = maxNsend2; 6440394ed5ebSJunchao Zhang } 6441394ed5ebSJunchao Zhang sendto[nsend] = owner; 64426497c311SBarry Smith PetscCall(PetscIntCast(p - k, &nentries[nsend])); 6443394ed5ebSJunchao Zhang nsend++; 6444394ed5ebSJunchao Zhang k = p; 6445394ed5ebSJunchao Zhang } 6446394ed5ebSJunchao Zhang 6447394ed5ebSJunchao Zhang /* Build 1st SF to know offsets on remote to send data */ 6448394ed5ebSJunchao Zhang PetscSF sf1; 6449394ed5ebSJunchao Zhang PetscInt nroots = 1, nroots2 = 0; 6450394ed5ebSJunchao Zhang PetscInt nleaves = nsend, nleaves2 = 0; 6451394ed5ebSJunchao Zhang PetscInt *offsets; 6452394ed5ebSJunchao Zhang PetscSFNode *iremote; 6453394ed5ebSJunchao Zhang 64549566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf1)); 64559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &iremote)); 64569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend, &offsets)); 6457394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 6458394ed5ebSJunchao Zhang iremote[k].rank = sendto[k]; 6459394ed5ebSJunchao Zhang iremote[k].index = 0; 6460394ed5ebSJunchao Zhang nleaves2 += nentries[k]; 646154c59aa7SJacob Faibussowitsch PetscCheck(nleaves2 >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF leaves is too large for PetscInt"); 6462394ed5ebSJunchao Zhang } 64639566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf1, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 64649566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpWithMemTypeBegin(sf1, MPIU_INT, PETSC_MEMTYPE_HOST, &nroots2 /*rootdata*/, PETSC_MEMTYPE_HOST, nentries /*leafdata*/, PETSC_MEMTYPE_HOST, offsets /*leafupdate*/, MPI_SUM)); 64659566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf1, MPIU_INT, &nroots2, nentries, offsets, MPI_SUM)); /* Would nroots2 overflow, we check offsets[] below */ 64669566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf1)); 6467e978a55eSPierre Jolivet PetscAssert(nleaves2 == n1 - rem, PETSC_COMM_SELF, PETSC_ERR_PLIB, "nleaves2 %" PetscInt_FMT " != number of remote entries %" PetscCount_FMT, nleaves2, n1 - rem); 6468394ed5ebSJunchao Zhang 6469394ed5ebSJunchao Zhang /* Build 2nd SF to send remote COOs to their owner */ 6470394ed5ebSJunchao Zhang PetscSF sf2; 6471394ed5ebSJunchao Zhang nroots = nroots2; 6472394ed5ebSJunchao Zhang nleaves = nleaves2; 64739566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &sf2)); 64749566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(sf2)); 64759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 6476394ed5ebSJunchao Zhang p = 0; 6477394ed5ebSJunchao Zhang for (k = 0; k < nsend; k++) { 647854c59aa7SJacob Faibussowitsch PetscCheck(offsets[k] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Number of SF roots is too large for PetscInt"); 6479394ed5ebSJunchao Zhang for (q = 0; q < nentries[k]; q++, p++) { 6480394ed5ebSJunchao Zhang iremote[p].rank = sendto[k]; 64816497c311SBarry Smith PetscCall(PetscIntCast(offsets[k] + q, &iremote[p].index)); 6482394ed5ebSJunchao Zhang } 6483394ed5ebSJunchao Zhang } 64849566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf2, nroots, nleaves, NULL, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 6485394ed5ebSJunchao Zhang 6486394ed5ebSJunchao Zhang /* Send the remote COOs to their owner */ 6487394ed5ebSJunchao Zhang PetscInt n2 = nroots, *i2, *j2; /* Buffers for received COOs from other ranks, along with a permutation array */ 6488394ed5ebSJunchao Zhang PetscCount *perm2; /* Though PetscInt is enough for remote entries, we use PetscCount here as we want to reuse MatSplitEntries_Internal() */ 64899566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(n2, &i2, n2, &j2, n2, &perm2)); 6490834dcf29SHansol Suh PetscAssert(rem == 0 || i1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6491834dcf29SHansol Suh PetscAssert(rem == 0 || j1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6492de0a9f35SPierre Jolivet PetscInt *i1prem = PetscSafePointerPlusOffset(i1, rem); 6493de0a9f35SPierre Jolivet PetscInt *j1prem = PetscSafePointerPlusOffset(j1, rem); 6494834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, i1prem, PETSC_MEMTYPE_HOST, i2, MPI_REPLACE)); 6495834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, i1prem, i2, MPI_REPLACE)); 6496834dcf29SHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(sf2, MPIU_INT, PETSC_MEMTYPE_HOST, j1prem, PETSC_MEMTYPE_HOST, j2, MPI_REPLACE)); 6497834dcf29SHansol Suh PetscCall(PetscSFReduceEnd(sf2, MPIU_INT, j1prem, j2, MPI_REPLACE)); 6498394ed5ebSJunchao Zhang 64999566063dSJacob Faibussowitsch PetscCall(PetscFree(offsets)); 65009566063dSJacob Faibussowitsch PetscCall(PetscFree2(sendto, nentries)); 6501394ed5ebSJunchao Zhang 6502394ed5ebSJunchao Zhang /* Sort received COOs by row along with the permutation array */ 6503394ed5ebSJunchao Zhang for (k = 0; k < n2; k++) perm2[k] = k; 65049566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithIntCountArrayPair(n2, i2, j2, perm2)); 6505394ed5ebSJunchao Zhang 6506651b1cf9SStefano Zampini /* sf2 only sends contiguous leafdata to contiguous rootdata. We record the permutation which will be used to fill leafdata */ 6507651b1cf9SStefano Zampini PetscCount *Cperm1; 6508834dcf29SHansol Suh PetscAssert(rem == 0 || perm1 != NULL, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Cannot add nonzero offset to null"); 6509de0a9f35SPierre Jolivet PetscCount *perm1prem = PetscSafePointerPlusOffset(perm1, rem); 6510651b1cf9SStefano Zampini PetscCall(PetscMalloc1(nleaves, &Cperm1)); 6511834dcf29SHansol Suh PetscCall(PetscArraycpy(Cperm1, perm1prem, nleaves)); 6512651b1cf9SStefano Zampini 6513651b1cf9SStefano Zampini /* Support for HYPRE matrices, kind of a hack. 6514651b1cf9SStefano Zampini Swap min column with diagonal so that diagonal values will go first */ 6515651b1cf9SStefano Zampini PetscBool hypre; 651617b874c6SStefano Zampini PetscCall(PetscStrcmp("_internal_COO_mat_for_hypre", ((PetscObject)mat)->name, &hypre)); 6517651b1cf9SStefano Zampini if (hypre) { 6518651b1cf9SStefano Zampini PetscInt *minj; 6519651b1cf9SStefano Zampini PetscBT hasdiag; 6520651b1cf9SStefano Zampini 6521651b1cf9SStefano Zampini PetscCall(PetscBTCreate(m, &hasdiag)); 6522651b1cf9SStefano Zampini PetscCall(PetscMalloc1(m, &minj)); 65231690c2aeSBarry Smith for (k = 0; k < m; k++) minj[k] = PETSC_INT_MAX; 6524651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6525651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend) continue; 6526651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6527651b1cf9SStefano Zampini if ((j1[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6528651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j1[k]); 6529651b1cf9SStefano Zampini } 6530651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6531651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend) continue; 6532651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6533651b1cf9SStefano Zampini if ((j2[k] - cstart) == rindex) PetscCall(PetscBTSet(hasdiag, rindex)); 6534651b1cf9SStefano Zampini minj[rindex] = PetscMin(minj[rindex], j2[k]); 6535651b1cf9SStefano Zampini } 6536651b1cf9SStefano Zampini for (k = i1start; k < rem; k++) { 6537651b1cf9SStefano Zampini const PetscInt rindex = i1[k] - rstart; 6538651b1cf9SStefano Zampini if (j1[k] < cstart || j1[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6539651b1cf9SStefano Zampini if (j1[k] == minj[rindex]) j1[k] = i1[k] + (cstart - rstart); 6540651b1cf9SStefano Zampini else if ((j1[k] - cstart) == rindex) j1[k] = minj[rindex]; 6541651b1cf9SStefano Zampini } 6542651b1cf9SStefano Zampini for (k = 0; k < n2; k++) { 6543651b1cf9SStefano Zampini const PetscInt rindex = i2[k] - rstart; 6544651b1cf9SStefano Zampini if (j2[k] < cstart || j2[k] >= cend || !PetscBTLookup(hasdiag, rindex)) continue; 6545651b1cf9SStefano Zampini if (j2[k] == minj[rindex]) j2[k] = i2[k] + (cstart - rstart); 6546651b1cf9SStefano Zampini else if ((j2[k] - cstart) == rindex) j2[k] = minj[rindex]; 6547651b1cf9SStefano Zampini } 6548651b1cf9SStefano Zampini PetscCall(PetscBTDestroy(&hasdiag)); 6549651b1cf9SStefano Zampini PetscCall(PetscFree(minj)); 6550651b1cf9SStefano Zampini } 6551651b1cf9SStefano Zampini 6552651b1cf9SStefano Zampini /* Split local COOs and received COOs into diag/offdiag portions */ 6553651b1cf9SStefano Zampini PetscCount *rowBegin1, *rowMid1, *rowEnd1; 6554651b1cf9SStefano Zampini PetscCount *Ajmap1, *Aperm1, *Bjmap1, *Bperm1; 6555651b1cf9SStefano Zampini PetscCount Annz1, Bnnz1, Atot1, Btot1; 6556394ed5ebSJunchao Zhang PetscCount *rowBegin2, *rowMid2, *rowEnd2; 6557394ed5ebSJunchao Zhang PetscCount *Ajmap2, *Aperm2, *Bjmap2, *Bperm2; 6558394ed5ebSJunchao Zhang PetscCount Annz2, Bnnz2, Atot2, Btot2; 6559394ed5ebSJunchao Zhang 6560651b1cf9SStefano Zampini PetscCall(PetscCalloc3(m, &rowBegin1, m, &rowMid1, m, &rowEnd1)); 65619566063dSJacob Faibussowitsch PetscCall(PetscCalloc3(m, &rowBegin2, m, &rowMid2, m, &rowEnd2)); 6562651b1cf9SStefano Zampini PetscCall(MatSplitEntries_Internal(mat, rem, i1, j1, perm1, rowBegin1, rowMid1, rowEnd1, &Atot1, &Aperm1, &Annz1, &Ajmap1, &Btot1, &Bperm1, &Bnnz1, &Bjmap1)); 65639566063dSJacob Faibussowitsch PetscCall(MatSplitEntries_Internal(mat, n2, i2, j2, perm2, rowBegin2, rowMid2, rowEnd2, &Atot2, &Aperm2, &Annz2, &Ajmap2, &Btot2, &Bperm2, &Bnnz2, &Bjmap2)); 6564394ed5ebSJunchao Zhang 6565394ed5ebSJunchao Zhang /* Merge local COOs with received COOs: diag with diag, offdiag with offdiag */ 6566394ed5ebSJunchao Zhang PetscInt *Ai, *Bi; 6567394ed5ebSJunchao Zhang PetscInt *Aj, *Bj; 6568394ed5ebSJunchao Zhang 65699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Ai)); 65709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &Bi)); 65719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz1 + Annz2, &Aj)); /* Since local and remote entries might have dups, we might allocate excess memory */ 65729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz1 + Bnnz2, &Bj)); 6573394ed5ebSJunchao Zhang 6574394ed5ebSJunchao Zhang PetscCount *Aimap1, *Bimap1, *Aimap2, *Bimap2; 6575158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz1, &Aimap1)); 6576158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz1, &Bimap1)); 6577158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz2, &Aimap2)); 6578158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz2, &Bimap2)); 6579394ed5ebSJunchao Zhang 65809566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowBegin1, rowMid1, rowBegin2, rowMid2, Ajmap1, Ajmap2, Aimap1, Aimap2, Ai, Aj)); 65819566063dSJacob Faibussowitsch PetscCall(MatMergeEntries_Internal(mat, j1, j2, rowMid1, rowEnd1, rowMid2, rowEnd2, Bjmap1, Bjmap2, Bimap1, Bimap2, Bi, Bj)); 6582158ec288SJunchao Zhang 6583158ec288SJunchao Zhang /* Expand Ajmap1/Bjmap1 to make them based off nonzeros in A/B, since we */ 6584158ec288SJunchao Zhang /* expect nonzeros in A/B most likely have local contributing entries */ 6585158ec288SJunchao Zhang PetscInt Annz = Ai[m]; 6586158ec288SJunchao Zhang PetscInt Bnnz = Bi[m]; 6587158ec288SJunchao Zhang PetscCount *Ajmap1_new, *Bjmap1_new; 6588158ec288SJunchao Zhang 6589158ec288SJunchao Zhang PetscCall(PetscMalloc1(Annz + 1, &Ajmap1_new)); 6590158ec288SJunchao Zhang PetscCall(PetscMalloc1(Bnnz + 1, &Bjmap1_new)); 6591158ec288SJunchao Zhang 6592158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Annz1, Annz, Aimap1, Ajmap1, Ajmap1_new)); 6593158ec288SJunchao Zhang PetscCall(ExpandJmap_Internal(Bnnz1, Bnnz, Bimap1, Bjmap1, Bjmap1_new)); 6594158ec288SJunchao Zhang 6595158ec288SJunchao Zhang PetscCall(PetscFree(Aimap1)); 6596158ec288SJunchao Zhang PetscCall(PetscFree(Ajmap1)); 6597158ec288SJunchao Zhang PetscCall(PetscFree(Bimap1)); 6598158ec288SJunchao Zhang PetscCall(PetscFree(Bjmap1)); 65999566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin1, rowMid1, rowEnd1)); 66009566063dSJacob Faibussowitsch PetscCall(PetscFree3(rowBegin2, rowMid2, rowEnd2)); 6601e8729f6fSJunchao Zhang PetscCall(PetscFree(perm1)); 66029566063dSJacob Faibussowitsch PetscCall(PetscFree3(i2, j2, perm2)); 6603394ed5ebSJunchao Zhang 6604158ec288SJunchao Zhang Ajmap1 = Ajmap1_new; 6605158ec288SJunchao Zhang Bjmap1 = Bjmap1_new; 6606158ec288SJunchao Zhang 6607394ed5ebSJunchao Zhang /* Reallocate Aj, Bj once we know actual numbers of unique nonzeros in A and B */ 6608394ed5ebSJunchao Zhang if (Annz < Annz1 + Annz2) { 6609394ed5ebSJunchao Zhang PetscInt *Aj_new; 66109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Annz, &Aj_new)); 66119566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Aj_new, Aj, Annz)); 66129566063dSJacob Faibussowitsch PetscCall(PetscFree(Aj)); 6613394ed5ebSJunchao Zhang Aj = Aj_new; 6614394ed5ebSJunchao Zhang } 6615394ed5ebSJunchao Zhang 6616394ed5ebSJunchao Zhang if (Bnnz < Bnnz1 + Bnnz2) { 6617394ed5ebSJunchao Zhang PetscInt *Bj_new; 66189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bnnz, &Bj_new)); 66199566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(Bj_new, Bj, Bnnz)); 66209566063dSJacob Faibussowitsch PetscCall(PetscFree(Bj)); 6621394ed5ebSJunchao Zhang Bj = Bj_new; 6622394ed5ebSJunchao Zhang } 6623394ed5ebSJunchao Zhang 6624cbc6b225SStefano Zampini /* Create new submatrices for on-process and off-process coupling */ 6625394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 6626cbc6b225SStefano Zampini MatType rtype; 6627394ed5ebSJunchao Zhang Mat_SeqAIJ *a, *b; 6628cf8ba265SJunchao Zhang PetscObjectState state; 66299566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Annz, &Aa)); /* Zero matrix on device */ 66309566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(Bnnz, &Ba)); 6631394ed5ebSJunchao Zhang /* make Aj[] local, i.e, based off the start column of the diagonal portion */ 66329371c9d4SSatish Balay if (cstart) { 66339371c9d4SSatish Balay for (k = 0; k < Annz; k++) Aj[k] -= cstart; 66349371c9d4SSatish Balay } 6635c508b908SBarry Smith 66369566063dSJacob Faibussowitsch PetscCall(MatGetRootType_Private(mat, &rtype)); 6637c508b908SBarry Smith 6638c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->A); 6639c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->A)); 66409566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, Ai, Aj, Aa, &mpiaij->A)); 66410da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->A, mat, mat)); 6642c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->A); 6643c508b908SBarry Smith 6644c508b908SBarry Smith MatSeqXAIJGetOptions_Private(mpiaij->B); 6645c508b908SBarry Smith PetscCall(MatDestroy(&mpiaij->B)); 66469566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, mat->cmap->N, Bi, Bj, Ba, &mpiaij->B)); 66470da474c6SJeremy L Thompson PetscCall(MatSetBlockSizesFromMats(mpiaij->B, mat, mat)); 6648c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(mpiaij->B); 6649c508b908SBarry Smith 66509566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIAIJ(mat)); 66515bb69915SJunchao Zhang mat->was_assembled = PETSC_TRUE; // was_assembled in effect means the Mvctx is built; doing so avoids redundant MatSetUpMultiply_MPIAIJ 6652cf8ba265SJunchao Zhang state = mpiaij->A->nonzerostate + mpiaij->B->nonzerostate; 6653462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 6654cbc6b225SStefano Zampini 6655394ed5ebSJunchao Zhang a = (Mat_SeqAIJ *)mpiaij->A->data; 6656394ed5ebSJunchao Zhang b = (Mat_SeqAIJ *)mpiaij->B->data; 66579f0612e4SBarry Smith a->free_a = PETSC_TRUE; 66589f0612e4SBarry Smith a->free_ij = PETSC_TRUE; 66599f0612e4SBarry Smith b->free_a = PETSC_TRUE; 66609f0612e4SBarry Smith b->free_ij = PETSC_TRUE; 666117b874c6SStefano Zampini a->maxnz = a->nz; 666217b874c6SStefano Zampini b->maxnz = b->nz; 6663394ed5ebSJunchao Zhang 6664cbc6b225SStefano Zampini /* conversion must happen AFTER multiply setup */ 66659566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->A, rtype, MAT_INPLACE_MATRIX, &mpiaij->A)); 66669566063dSJacob Faibussowitsch PetscCall(MatConvert(mpiaij->B, rtype, MAT_INPLACE_MATRIX, &mpiaij->B)); 66679566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mpiaij->lvec)); 66689566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(mpiaij->B, &mpiaij->lvec, NULL)); 6669cbc6b225SStefano Zampini 66702c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 66712c4ab24aSJunchao Zhang PetscCall(PetscMalloc1(1, &coo)); 66722c4ab24aSJunchao Zhang coo->n = coo_n; 66732c4ab24aSJunchao Zhang coo->sf = sf2; 66742c4ab24aSJunchao Zhang coo->sendlen = nleaves; 66752c4ab24aSJunchao Zhang coo->recvlen = nroots; 66762c4ab24aSJunchao Zhang coo->Annz = Annz; 66772c4ab24aSJunchao Zhang coo->Bnnz = Bnnz; 66782c4ab24aSJunchao Zhang coo->Annz2 = Annz2; 66792c4ab24aSJunchao Zhang coo->Bnnz2 = Bnnz2; 66802c4ab24aSJunchao Zhang coo->Atot1 = Atot1; 66812c4ab24aSJunchao Zhang coo->Atot2 = Atot2; 66822c4ab24aSJunchao Zhang coo->Btot1 = Btot1; 66832c4ab24aSJunchao Zhang coo->Btot2 = Btot2; 66842c4ab24aSJunchao Zhang coo->Ajmap1 = Ajmap1; 66852c4ab24aSJunchao Zhang coo->Aperm1 = Aperm1; 66862c4ab24aSJunchao Zhang coo->Bjmap1 = Bjmap1; 66872c4ab24aSJunchao Zhang coo->Bperm1 = Bperm1; 66882c4ab24aSJunchao Zhang coo->Aimap2 = Aimap2; 66892c4ab24aSJunchao Zhang coo->Ajmap2 = Ajmap2; 66902c4ab24aSJunchao Zhang coo->Aperm2 = Aperm2; 66912c4ab24aSJunchao Zhang coo->Bimap2 = Bimap2; 66922c4ab24aSJunchao Zhang coo->Bjmap2 = Bjmap2; 66932c4ab24aSJunchao Zhang coo->Bperm2 = Bperm2; 66942c4ab24aSJunchao Zhang coo->Cperm1 = Cperm1; 66952c4ab24aSJunchao Zhang // Allocate in preallocation. If not used, it has zero cost on host 66962c4ab24aSJunchao Zhang PetscCall(PetscMalloc2(coo->sendlen, &coo->sendbuf, coo->recvlen, &coo->recvbuf)); 66972c4ab24aSJunchao Zhang PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &container)); 66982c4ab24aSJunchao Zhang PetscCall(PetscContainerSetPointer(container, coo)); 669949abdd8aSBarry Smith PetscCall(PetscContainerSetCtxDestroy(container, MatCOOStructDestroy_MPIAIJ)); 67002c4ab24aSJunchao Zhang PetscCall(PetscObjectCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject)container)); 67012c4ab24aSJunchao Zhang PetscCall(PetscContainerDestroy(&container)); 67023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6703394ed5ebSJunchao Zhang } 6704394ed5ebSJunchao Zhang 6705d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_MPIAIJ(Mat mat, const PetscScalar v[], InsertMode imode) 6706d71ae5a4SJacob Faibussowitsch { 6707394ed5ebSJunchao Zhang Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)mat->data; 6708394ed5ebSJunchao Zhang Mat A = mpiaij->A, B = mpiaij->B; 6709394ed5ebSJunchao Zhang PetscScalar *Aa, *Ba; 67102c4ab24aSJunchao Zhang PetscScalar *sendbuf, *recvbuf; 67112c4ab24aSJunchao Zhang const PetscCount *Ajmap1, *Ajmap2, *Aimap2; 67122c4ab24aSJunchao Zhang const PetscCount *Bjmap1, *Bjmap2, *Bimap2; 67132c4ab24aSJunchao Zhang const PetscCount *Aperm1, *Aperm2, *Bperm1, *Bperm2; 67142c4ab24aSJunchao Zhang const PetscCount *Cperm1; 67152c4ab24aSJunchao Zhang PetscContainer container; 67162c4ab24aSJunchao Zhang MatCOOStruct_MPIAIJ *coo; 6717394ed5ebSJunchao Zhang 6718394ed5ebSJunchao Zhang PetscFunctionBegin; 67192c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container)); 67202c4ab24aSJunchao Zhang PetscCheck(container, PetscObjectComm((PetscObject)mat), PETSC_ERR_PLIB, "Not found MatCOOStruct on this matrix"); 67212a8381b2SBarry Smith PetscCall(PetscContainerGetPointer(container, &coo)); 67222c4ab24aSJunchao Zhang sendbuf = coo->sendbuf; 67232c4ab24aSJunchao Zhang recvbuf = coo->recvbuf; 67242c4ab24aSJunchao Zhang Ajmap1 = coo->Ajmap1; 67252c4ab24aSJunchao Zhang Ajmap2 = coo->Ajmap2; 67262c4ab24aSJunchao Zhang Aimap2 = coo->Aimap2; 67272c4ab24aSJunchao Zhang Bjmap1 = coo->Bjmap1; 67282c4ab24aSJunchao Zhang Bjmap2 = coo->Bjmap2; 67292c4ab24aSJunchao Zhang Bimap2 = coo->Bimap2; 67302c4ab24aSJunchao Zhang Aperm1 = coo->Aperm1; 67312c4ab24aSJunchao Zhang Aperm2 = coo->Aperm2; 67322c4ab24aSJunchao Zhang Bperm1 = coo->Bperm1; 67332c4ab24aSJunchao Zhang Bperm2 = coo->Bperm2; 67342c4ab24aSJunchao Zhang Cperm1 = coo->Cperm1; 67352c4ab24aSJunchao Zhang 67369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &Aa)); /* Might read and write matrix values */ 67379566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &Ba)); 6738394ed5ebSJunchao Zhang 6739394ed5ebSJunchao Zhang /* Pack entries to be sent to remote */ 67402c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->sendlen; i++) sendbuf[i] = v[Cperm1[i]]; 6741394ed5ebSJunchao Zhang 6742394ed5ebSJunchao Zhang /* Send remote entries to their owner and overlap the communication with local computation */ 67432c4ab24aSJunchao Zhang PetscCall(PetscSFReduceWithMemTypeBegin(coo->sf, MPIU_SCALAR, PETSC_MEMTYPE_HOST, sendbuf, PETSC_MEMTYPE_HOST, recvbuf, MPI_REPLACE)); 6744394ed5ebSJunchao Zhang /* Add local entries to A and B */ 67452c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz; i++) { /* All nonzeros in A are either zero'ed or added with a value (i.e., initialized) */ 6746da81f932SPierre Jolivet PetscScalar sum = 0.0; /* Do partial summation first to improve numerical stability */ 6747158ec288SJunchao Zhang for (PetscCount k = Ajmap1[i]; k < Ajmap1[i + 1]; k++) sum += v[Aperm1[k]]; 6748158ec288SJunchao Zhang Aa[i] = (imode == INSERT_VALUES ? 0.0 : Aa[i]) + sum; 6749394ed5ebSJunchao Zhang } 67502c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz; i++) { 6751158ec288SJunchao Zhang PetscScalar sum = 0.0; 6752158ec288SJunchao Zhang for (PetscCount k = Bjmap1[i]; k < Bjmap1[i + 1]; k++) sum += v[Bperm1[k]]; 6753158ec288SJunchao Zhang Ba[i] = (imode == INSERT_VALUES ? 0.0 : Ba[i]) + sum; 6754394ed5ebSJunchao Zhang } 67552c4ab24aSJunchao Zhang PetscCall(PetscSFReduceEnd(coo->sf, MPIU_SCALAR, sendbuf, recvbuf, MPI_REPLACE)); 6756394ed5ebSJunchao Zhang 6757394ed5ebSJunchao Zhang /* Add received remote entries to A and B */ 67582c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Annz2; i++) { 6759394ed5ebSJunchao Zhang for (PetscCount k = Ajmap2[i]; k < Ajmap2[i + 1]; k++) Aa[Aimap2[i]] += recvbuf[Aperm2[k]]; 6760394ed5ebSJunchao Zhang } 67612c4ab24aSJunchao Zhang for (PetscCount i = 0; i < coo->Bnnz2; i++) { 6762394ed5ebSJunchao Zhang for (PetscCount k = Bjmap2[i]; k < Bjmap2[i + 1]; k++) Ba[Bimap2[i]] += recvbuf[Bperm2[k]]; 6763394ed5ebSJunchao Zhang } 67649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &Aa)); 67659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &Ba)); 67663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6767394ed5ebSJunchao Zhang } 6768394ed5ebSJunchao Zhang 6769ccd8e176SBarry Smith /*MC 6770ccd8e176SBarry Smith MATMPIAIJ - MATMPIAIJ = "mpiaij" - A matrix type to be used for parallel sparse matrices. 6771ccd8e176SBarry Smith 6772ccd8e176SBarry Smith Options Database Keys: 677311a5261eSBarry Smith . -mat_type mpiaij - sets the matrix type to `MATMPIAIJ` during a call to `MatSetFromOptions()` 6774ccd8e176SBarry Smith 6775ccd8e176SBarry Smith Level: beginner 67760cd7f59aSBarry Smith 67770cd7f59aSBarry Smith Notes: 67782ef1f0ffSBarry Smith `MatSetValues()` may be called for this matrix type with a `NULL` argument for the numerical values, 67790cd7f59aSBarry Smith in this case the values associated with the rows and columns one passes in are set to zero 67800cd7f59aSBarry Smith in the matrix 67810cd7f59aSBarry Smith 678211a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 678311a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 6784ccd8e176SBarry Smith 67851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQAIJ`, `MATAIJ`, `MatCreateAIJ()` 6786ccd8e176SBarry Smith M*/ 6787d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJ(Mat B) 6788d71ae5a4SJacob Faibussowitsch { 6789ccd8e176SBarry Smith Mat_MPIAIJ *b; 6790ccd8e176SBarry Smith PetscMPIInt size; 6791ccd8e176SBarry Smith 6792ccd8e176SBarry Smith PetscFunctionBegin; 67939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 67942205254eSKarl Rupp 67954dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 6796ccd8e176SBarry Smith B->data = (void *)b; 6797aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 6798ccd8e176SBarry Smith B->assembled = PETSC_FALSE; 6799ccd8e176SBarry Smith B->insertmode = NOT_SET_VALUES; 6800ccd8e176SBarry Smith b->size = size; 68012205254eSKarl Rupp 68029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 6803ccd8e176SBarry Smith 6804ccd8e176SBarry Smith /* build cache for off array entries formed */ 68059566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 68062205254eSKarl Rupp 6807ccd8e176SBarry Smith b->donotstash = PETSC_FALSE; 6808f4259b30SLisandro Dalcin b->colmap = NULL; 6809f4259b30SLisandro Dalcin b->garray = NULL; 6810ccd8e176SBarry Smith b->roworiented = PETSC_TRUE; 6811ccd8e176SBarry Smith 6812ccd8e176SBarry Smith /* stuff used for matrix vector multiply */ 68130298fd71SBarry Smith b->lvec = NULL; 68140298fd71SBarry Smith b->Mvctx = NULL; 6815ccd8e176SBarry Smith 6816ccd8e176SBarry Smith /* stuff for MatGetRow() */ 6817f4259b30SLisandro Dalcin b->rowindices = NULL; 6818f4259b30SLisandro Dalcin b->rowvalues = NULL; 6819ccd8e176SBarry Smith b->getrowactive = PETSC_FALSE; 6820ccd8e176SBarry Smith 6821f719121fSJed Brown /* flexible pointer used in CUSPARSE classes */ 68220298fd71SBarry Smith b->spptr = NULL; 6823f60c3dc2SHong Zhang 68249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetUseScalableIncreaseOverlap_C", MatMPIAIJSetUseScalableIncreaseOverlap_MPIAIJ)); 68259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIAIJ)); 68269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIAIJ)); 68279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatIsTranspose_C", MatIsTranspose_MPIAIJ)); 68289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocation_C", MatMPIAIJSetPreallocation_MPIAIJ)); 68299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetPreallocation_C", MatResetPreallocation_MPIAIJ)); 6830674b392bSAlexander PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatResetHash_C", MatResetHash_MPIAIJ)); 68319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIAIJSetPreallocationCSR_C", MatMPIAIJSetPreallocationCSR_MPIAIJ)); 68329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIAIJ)); 68339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijperm_C", MatConvert_MPIAIJ_MPIAIJPERM)); 68349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijsell_C", MatConvert_MPIAIJ_MPIAIJSELL)); 68353d0639e7SStefano Zampini #if defined(PETSC_HAVE_CUDA) 68369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcusparse_C", MatConvert_MPIAIJ_MPIAIJCUSPARSE)); 68373d0639e7SStefano Zampini #endif 6838d5e393b6SSuyash Tandon #if defined(PETSC_HAVE_HIP) 6839d5e393b6SSuyash Tandon PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijhipsparse_C", MatConvert_MPIAIJ_MPIAIJHIPSPARSE)); 6840d5e393b6SSuyash Tandon #endif 68413d0639e7SStefano Zampini #if defined(PETSC_HAVE_KOKKOS_KERNELS) 68429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijkokkos_C", MatConvert_MPIAIJ_MPIAIJKokkos)); 68433d0639e7SStefano Zampini #endif 68449779e05dSSatish Balay #if defined(PETSC_HAVE_MKL_SPARSE) 68459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijmkl_C", MatConvert_MPIAIJ_MPIAIJMKL)); 6846191b95cbSRichard Tran Mills #endif 68479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpiaijcrl_C", MatConvert_MPIAIJ_MPIAIJCRL)); 68489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpibaij_C", MatConvert_MPIAIJ_MPIBAIJ)); 68499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisbaij_C", MatConvert_MPIAIJ_MPISBAIJ)); 68509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 68515d7652ecSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 68529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_elemental_C", MatConvert_MPIAIJ_Elemental)); 68535d7652ecSHong Zhang #endif 6854d1a032dbSPierre Jolivet #if defined(PETSC_HAVE_SCALAPACK) && (defined(PETSC_USE_REAL_SINGLE) || defined(PETSC_USE_REAL_DOUBLE)) 68559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_scalapack_C", MatConvert_AIJ_ScaLAPACK)); 6856d24d4204SJose E. Roman #endif 68579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_is_C", MatConvert_XAIJ_IS)); 68589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_mpisell_C", MatConvert_MPIAIJ_MPISELL)); 68593dad0653Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 68609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpiaij_hypre_C", MatConvert_AIJ_HYPRE)); 68619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_transpose_mpiaij_mpiaij_C", MatProductSetFromOptions_Transpose_AIJ_AIJ)); 68623dad0653Sstefano_zampini #endif 68639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_is_mpiaij_C", MatProductSetFromOptions_IS_XAIJ)); 68649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatProductSetFromOptions_mpiaij_mpiaij_C", MatProductSetFromOptions_MPIAIJ)); 68659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_MPIAIJ)); 68669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetValuesCOO_C", MatSetValuesCOO_MPIAIJ)); 68679566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIAIJ)); 68683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6869ccd8e176SBarry Smith } 687081824310SBarry Smith 68715d83a8b1SBarry Smith /*@ 687211a5261eSBarry Smith MatCreateMPIAIJWithSplitArrays - creates a `MATMPIAIJ` matrix using arrays that contain the "diagonal" 687303bfb495SBarry Smith and "off-diagonal" part of the matrix in CSR format. 687403bfb495SBarry Smith 6875d083f849SBarry Smith Collective 687603bfb495SBarry Smith 687703bfb495SBarry Smith Input Parameters: 687803bfb495SBarry Smith + comm - MPI communicator 687911a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 688003bfb495SBarry Smith . n - This value should be the same as the local size used in creating the 6881d8a51d2aSBarry Smith x vector for the matrix-vector product $y = Ax$. (or `PETSC_DECIDE` to have 68822ef1f0ffSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 68832ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 68842ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 6885483a2f95SBarry Smith . i - row indices for "diagonal" portion of matrix; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row of the matrix 688604ccdda3SJunchao Zhang . j - column indices, which must be local, i.e., based off the start column of the diagonal portion 688703bfb495SBarry Smith . a - matrix values 6888483a2f95SBarry Smith . oi - row indices for "off-diagonal" portion of matrix; that is oi[0] = 0, oi[row] = oi[row-1] + number of elements in that row of the matrix 68892ef1f0ffSBarry Smith . oj - column indices, which must be global, representing global columns in the `MATMPIAIJ` matrix 689003bfb495SBarry Smith - oa - matrix values 689103bfb495SBarry Smith 689203bfb495SBarry Smith Output Parameter: 689303bfb495SBarry Smith . mat - the matrix 689403bfb495SBarry Smith 689503bfb495SBarry Smith Level: advanced 689603bfb495SBarry Smith 689703bfb495SBarry Smith Notes: 6898f13dfd9eSBarry Smith The `i`, `j`, and `a` arrays ARE NOT copied by this routine into the internal format used by PETSc (even in Fortran). The user 6899292fb18eSBarry Smith must free the arrays once the matrix has been destroyed and not before. 690003bfb495SBarry Smith 69012ef1f0ffSBarry Smith The `i` and `j` indices are 0 based 690203bfb495SBarry Smith 69032ef1f0ffSBarry Smith See `MatCreateAIJ()` for the definition of "diagonal" and "off-diagonal" portion of the matrix 690403bfb495SBarry Smith 69057b55108eSBarry Smith This sets local rows and cannot be used to set off-processor values. 69067b55108eSBarry Smith 6907dca341c0SJed Brown Use of this routine is discouraged because it is inflexible and cumbersome to use. It is extremely rare that a 6908dca341c0SJed Brown legacy application natively assembles into exactly this split format. The code to do so is nontrivial and does 6909dca341c0SJed Brown not easily support in-place reassembly. It is recommended to use MatSetValues() (or a variant thereof) because 6910dca341c0SJed Brown the resulting assembly is easier to implement, will work with any matrix format, and the user does not have to 691111a5261eSBarry Smith keep track of the underlying array. Use `MatSetOption`(A,`MAT_NO_OFF_PROC_ENTRIES`,`PETSC_TRUE`) to disable all 6912dca341c0SJed Brown communication if it is known that only local entries will be set. 691303bfb495SBarry Smith 69141cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 6915db781477SPatrick Sanan `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithArrays()` 69162b26979fSBarry Smith @*/ 6917d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIAIJWithSplitArrays(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt i[], PetscInt j[], PetscScalar a[], PetscInt oi[], PetscInt oj[], PetscScalar oa[], Mat *mat) 6918d71ae5a4SJacob Faibussowitsch { 691903bfb495SBarry Smith Mat_MPIAIJ *maij; 692003bfb495SBarry Smith 692103bfb495SBarry Smith PetscFunctionBegin; 692208401ef6SPierre Jolivet PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 6923aed4548fSBarry Smith PetscCheck(i[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 6924aed4548fSBarry Smith PetscCheck(oi[0] == 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "oi (row indices) must start with 0"); 69259566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 69269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 69279566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIAIJ)); 692803bfb495SBarry Smith maij = (Mat_MPIAIJ *)(*mat)->data; 69292205254eSKarl Rupp 69308d7a6e47SBarry Smith (*mat)->preallocated = PETSC_TRUE; 693103bfb495SBarry Smith 69329566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->rmap)); 69339566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp((*mat)->cmap)); 693403bfb495SBarry Smith 69359566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, n, i, j, a, &maij->A)); 69369566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, m, (*mat)->cmap->N, oi, oj, oa, &maij->B)); 693703bfb495SBarry Smith 69389566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 69399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat, MAT_FINAL_ASSEMBLY)); 69409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat, MAT_FINAL_ASSEMBLY)); 69419566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NO_OFF_PROC_ENTRIES, PETSC_FALSE)); 69429566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 69433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 694403bfb495SBarry Smith } 694503bfb495SBarry Smith 69464e84afc0SStefano Zampini typedef struct { 69474e84afc0SStefano Zampini Mat *mp; /* intermediate products */ 69484e84afc0SStefano Zampini PetscBool *mptmp; /* is the intermediate product temporary ? */ 69494e84afc0SStefano Zampini PetscInt cp; /* number of intermediate products */ 69504e84afc0SStefano Zampini 69514e84afc0SStefano Zampini /* support for MatGetBrowsOfAoCols_MPIAIJ for P_oth */ 69524e84afc0SStefano Zampini PetscInt *startsj_s, *startsj_r; 69534e84afc0SStefano Zampini PetscScalar *bufa; 69544e84afc0SStefano Zampini Mat P_oth; 69554e84afc0SStefano Zampini 69564e84afc0SStefano Zampini /* may take advantage of merging product->B */ 6957ddea5d60SJunchao Zhang Mat Bloc; /* B-local by merging diag and off-diag */ 69584e84afc0SStefano Zampini 6959ddea5d60SJunchao Zhang /* cusparse does not have support to split between symbolic and numeric phases. 69604e84afc0SStefano Zampini When api_user is true, we don't need to update the numerical values 69614e84afc0SStefano Zampini of the temporary storage */ 69624e84afc0SStefano Zampini PetscBool reusesym; 69634e84afc0SStefano Zampini 69644e84afc0SStefano Zampini /* support for COO values insertion */ 6965ddea5d60SJunchao Zhang PetscScalar *coo_v, *coo_w; /* store on-process and off-process COO scalars, and used as MPI recv/send buffers respectively */ 6966ddea5d60SJunchao Zhang PetscInt **own; /* own[i] points to address of on-process COO indices for Mat mp[i] */ 6967ddea5d60SJunchao Zhang PetscInt **off; /* off[i] points to address of off-process COO indices for Mat mp[i] */ 6968ddea5d60SJunchao Zhang PetscBool hasoffproc; /* if true, have off-process values insertion (i.e. AtB or PtAP) */ 6969c215019aSStefano Zampini PetscSF sf; /* used for non-local values insertion and memory malloc */ 6970c215019aSStefano Zampini PetscMemType mtype; 69714e84afc0SStefano Zampini 69724e84afc0SStefano Zampini /* customization */ 69734e84afc0SStefano Zampini PetscBool abmerge; 6974abb89eb1SStefano Zampini PetscBool P_oth_bind; 69754e84afc0SStefano Zampini } MatMatMPIAIJBACKEND; 69764e84afc0SStefano Zampini 69772a8381b2SBarry Smith static PetscErrorCode MatProductCtxDestroy_MatMatMPIAIJBACKEND(PetscCtxRt data) 6978d71ae5a4SJacob Faibussowitsch { 6979cc1eb50dSBarry Smith MatMatMPIAIJBACKEND *mmdata = *(MatMatMPIAIJBACKEND **)data; 69804e84afc0SStefano Zampini PetscInt i; 69814e84afc0SStefano Zampini 69824e84afc0SStefano Zampini PetscFunctionBegin; 69839566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->startsj_s, mmdata->startsj_r)); 69849566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->bufa)); 69859566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_v)); 69869566063dSJacob Faibussowitsch PetscCall(PetscSFFree(mmdata->sf, mmdata->mtype, mmdata->coo_w)); 69879566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->P_oth)); 69889566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mmdata->Bloc)); 69899566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mmdata->sf)); 699048a46eb9SPierre Jolivet for (i = 0; i < mmdata->cp; i++) PetscCall(MatDestroy(&mmdata->mp[i])); 69919566063dSJacob Faibussowitsch PetscCall(PetscFree2(mmdata->mp, mmdata->mptmp)); 69929566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own[0])); 69939566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->own)); 69949566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off[0])); 69959566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata->off)); 69969566063dSJacob Faibussowitsch PetscCall(PetscFree(mmdata)); 69973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 69984e84afc0SStefano Zampini } 69994e84afc0SStefano Zampini 7000fff043a9SJunchao Zhang /* Copy selected n entries with indices in idx[] of A to v[]. 7001fff043a9SJunchao Zhang If idx is NULL, copy the whole data array of A to v[] 7002fff043a9SJunchao Zhang */ 7003d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJCopySubArray(Mat A, PetscInt n, const PetscInt idx[], PetscScalar v[]) 7004d71ae5a4SJacob Faibussowitsch { 7005c215019aSStefano Zampini PetscErrorCode (*f)(Mat, PetscInt, const PetscInt[], PetscScalar[]); 7006c215019aSStefano Zampini 7007c215019aSStefano Zampini PetscFunctionBegin; 70089566063dSJacob Faibussowitsch PetscCall(PetscObjectQueryFunction((PetscObject)A, "MatSeqAIJCopySubArray_C", &f)); 7009c215019aSStefano Zampini if (f) { 70109566063dSJacob Faibussowitsch PetscCall((*f)(A, n, idx, v)); 7011c215019aSStefano Zampini } else { 7012c215019aSStefano Zampini const PetscScalar *vv; 7013c215019aSStefano Zampini 70149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &vv)); 7015c215019aSStefano Zampini if (n && idx) { 7016c215019aSStefano Zampini PetscScalar *w = v; 7017c215019aSStefano Zampini const PetscInt *oi = idx; 7018c215019aSStefano Zampini PetscInt j; 7019c215019aSStefano Zampini 7020c215019aSStefano Zampini for (j = 0; j < n; j++) *w++ = vv[*oi++]; 7021c215019aSStefano Zampini } else { 70229566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(v, vv, n)); 7023c215019aSStefano Zampini } 70249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &vv)); 7025c215019aSStefano Zampini } 70263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7027c215019aSStefano Zampini } 7028c215019aSStefano Zampini 7029d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_MPIAIJBACKEND(Mat C) 7030d71ae5a4SJacob Faibussowitsch { 70314e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70324e84afc0SStefano Zampini PetscInt i, n_d, n_o; 70334e84afc0SStefano Zampini 70344e84afc0SStefano Zampini PetscFunctionBegin; 70354e84afc0SStefano Zampini MatCheckProduct(C, 1); 703628b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 70374e84afc0SStefano Zampini mmdata = (MatMatMPIAIJBACKEND *)C->product->data; 70384e84afc0SStefano Zampini if (!mmdata->reusesym) { /* update temporary matrices */ 703948a46eb9SPierre Jolivet if (mmdata->P_oth) PetscCall(MatGetBrowsOfAoCols_MPIAIJ(C->product->A, C->product->B, MAT_REUSE_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 704048a46eb9SPierre Jolivet if (mmdata->Bloc) PetscCall(MatMPIAIJGetLocalMatMerge(C->product->B, MAT_REUSE_MATRIX, NULL, &mmdata->Bloc)); 70414e84afc0SStefano Zampini } 70424e84afc0SStefano Zampini mmdata->reusesym = PETSC_FALSE; 7043abb89eb1SStefano Zampini 7044abb89eb1SStefano Zampini for (i = 0; i < mmdata->cp; i++) { 704508401ef6SPierre Jolivet PetscCheck(mmdata->mp[i]->ops->productnumeric, PetscObjectComm((PetscObject)mmdata->mp[i]), PETSC_ERR_PLIB, "Missing numeric op for %s", MatProductTypes[mmdata->mp[i]->product->type]); 70469566063dSJacob Faibussowitsch PetscCall((*mmdata->mp[i]->ops->productnumeric)(mmdata->mp[i])); 7047abb89eb1SStefano Zampini } 70484e84afc0SStefano Zampini for (i = 0, n_d = 0, n_o = 0; i < mmdata->cp; i++) { 70496497c311SBarry Smith PetscInt noff; 70504e84afc0SStefano Zampini 70516497c311SBarry Smith PetscCall(PetscIntCast(mmdata->off[i + 1] - mmdata->off[i], &noff)); 70524e84afc0SStefano Zampini if (mmdata->mptmp[i]) continue; 70534e84afc0SStefano Zampini if (noff) { 70546497c311SBarry Smith PetscInt nown; 7055c215019aSStefano Zampini 70566497c311SBarry Smith PetscCall(PetscIntCast(mmdata->own[i + 1] - mmdata->own[i], &nown)); 70579566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], noff, mmdata->off[i], mmdata->coo_w + n_o)); 70589566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], nown, mmdata->own[i], mmdata->coo_v + n_d)); 70594e84afc0SStefano Zampini n_o += noff; 70604e84afc0SStefano Zampini n_d += nown; 70614e84afc0SStefano Zampini } else { 7062c215019aSStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mmdata->mp[i]->data; 7063c215019aSStefano Zampini 70649566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCopySubArray(mmdata->mp[i], mm->nz, NULL, mmdata->coo_v + n_d)); 70654e84afc0SStefano Zampini n_d += mm->nz; 70664e84afc0SStefano Zampini } 70674e84afc0SStefano Zampini } 7068c215019aSStefano Zampini if (mmdata->hasoffproc) { /* offprocess insertion */ 70699566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70709566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_SCALAR, mmdata->coo_w, mmdata->coo_v + n_d)); 70714e84afc0SStefano Zampini } 70729566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(C, mmdata->coo_v, INSERT_VALUES)); 70733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 70744e84afc0SStefano Zampini } 70754e84afc0SStefano Zampini 70764e84afc0SStefano Zampini /* Support for Pt * A, A * P, or Pt * A * P */ 70774e84afc0SStefano Zampini #define MAX_NUMBER_INTERMEDIATE 4 7078d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSymbolic_MPIAIJBACKEND(Mat C) 7079d71ae5a4SJacob Faibussowitsch { 70804e84afc0SStefano Zampini Mat_Product *product = C->product; 7081ddea5d60SJunchao Zhang Mat A, P, mp[MAX_NUMBER_INTERMEDIATE]; /* A, P and a series of intermediate matrices */ 70824e84afc0SStefano Zampini Mat_MPIAIJ *a, *p; 70834e84afc0SStefano Zampini MatMatMPIAIJBACKEND *mmdata; 70844e84afc0SStefano Zampini ISLocalToGlobalMapping P_oth_l2g = NULL; 70854e84afc0SStefano Zampini IS glob = NULL; 70864e84afc0SStefano Zampini const char *prefix; 70874e84afc0SStefano Zampini char pprefix[256]; 70884e84afc0SStefano Zampini const PetscInt *globidx, *P_oth_idx; 708982a78a4eSJed Brown PetscInt i, j, cp, m, n, M, N, *coo_i, *coo_j; 709082a78a4eSJed Brown PetscCount ncoo, ncoo_d, ncoo_o, ncoo_oown; 7091ddea5d60SJunchao Zhang PetscInt cmapt[MAX_NUMBER_INTERMEDIATE], rmapt[MAX_NUMBER_INTERMEDIATE]; /* col/row map type for each Mat in mp[]. */ 7092ddea5d60SJunchao Zhang /* type-0: consecutive, start from 0; type-1: consecutive with */ 7093ddea5d60SJunchao Zhang /* a base offset; type-2: sparse with a local to global map table */ 7094ddea5d60SJunchao Zhang const PetscInt *cmapa[MAX_NUMBER_INTERMEDIATE], *rmapa[MAX_NUMBER_INTERMEDIATE]; /* col/row local to global map array (table) for type-2 map type */ 7095ddea5d60SJunchao Zhang 70964e84afc0SStefano Zampini MatProductType ptype; 7097d5e393b6SSuyash Tandon PetscBool mptmp[MAX_NUMBER_INTERMEDIATE], hasoffproc = PETSC_FALSE, iscuda, iship, iskokk; 70984e84afc0SStefano Zampini PetscMPIInt size; 70994e84afc0SStefano Zampini 71004e84afc0SStefano Zampini PetscFunctionBegin; 71014e84afc0SStefano Zampini MatCheckProduct(C, 1); 710228b400f6SJacob Faibussowitsch PetscCheck(!product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 71034e84afc0SStefano Zampini ptype = product->type; 7104b94d7dedSBarry Smith if (product->A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 7105fa046f9fSJunchao Zhang ptype = MATPRODUCT_AB; 7106fa046f9fSJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 7107fa046f9fSJunchao Zhang } 71084e84afc0SStefano Zampini switch (ptype) { 71094e84afc0SStefano Zampini case MATPRODUCT_AB: 71104e84afc0SStefano Zampini A = product->A; 71114e84afc0SStefano Zampini P = product->B; 71124e84afc0SStefano Zampini m = A->rmap->n; 71134e84afc0SStefano Zampini n = P->cmap->n; 71144e84afc0SStefano Zampini M = A->rmap->N; 71154e84afc0SStefano Zampini N = P->cmap->N; 7116ddea5d60SJunchao Zhang hasoffproc = PETSC_FALSE; /* will not scatter mat product values to other processes */ 71174e84afc0SStefano Zampini break; 71184e84afc0SStefano Zampini case MATPRODUCT_AtB: 71194e84afc0SStefano Zampini P = product->A; 71204e84afc0SStefano Zampini A = product->B; 71214e84afc0SStefano Zampini m = P->cmap->n; 71224e84afc0SStefano Zampini n = A->cmap->n; 71234e84afc0SStefano Zampini M = P->cmap->N; 71244e84afc0SStefano Zampini N = A->cmap->N; 71254e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71264e84afc0SStefano Zampini break; 71274e84afc0SStefano Zampini case MATPRODUCT_PtAP: 71284e84afc0SStefano Zampini A = product->A; 71294e84afc0SStefano Zampini P = product->B; 71304e84afc0SStefano Zampini m = P->cmap->n; 71314e84afc0SStefano Zampini n = P->cmap->n; 71324e84afc0SStefano Zampini M = P->cmap->N; 71334e84afc0SStefano Zampini N = P->cmap->N; 71344e84afc0SStefano Zampini hasoffproc = PETSC_TRUE; 71354e84afc0SStefano Zampini break; 7136d71ae5a4SJacob Faibussowitsch default: 7137d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 71384e84afc0SStefano Zampini } 71399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)C), &size)); 71404e84afc0SStefano Zampini if (size == 1) hasoffproc = PETSC_FALSE; 71414e84afc0SStefano Zampini 71424e84afc0SStefano Zampini /* defaults */ 71434e84afc0SStefano Zampini for (i = 0; i < MAX_NUMBER_INTERMEDIATE; i++) { 71444e84afc0SStefano Zampini mp[i] = NULL; 71454e84afc0SStefano Zampini mptmp[i] = PETSC_FALSE; 71464e84afc0SStefano Zampini rmapt[i] = -1; 71474e84afc0SStefano Zampini cmapt[i] = -1; 71484e84afc0SStefano Zampini rmapa[i] = NULL; 71494e84afc0SStefano Zampini cmapa[i] = NULL; 71504e84afc0SStefano Zampini } 71514e84afc0SStefano Zampini 71524e84afc0SStefano Zampini /* customization */ 71539566063dSJacob Faibussowitsch PetscCall(PetscNew(&mmdata)); 71544e84afc0SStefano Zampini mmdata->reusesym = product->api_user; 71554e84afc0SStefano Zampini if (ptype == MATPRODUCT_AB) { 71564e84afc0SStefano Zampini if (product->api_user) { 7157d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 71589566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71599566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7160d0609cedSBarry Smith PetscOptionsEnd(); 71614e84afc0SStefano Zampini } else { 7162d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 71639566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_mergeB", "Merge product->B local matrices", "MatMatMult", mmdata->abmerge, &mmdata->abmerge, NULL)); 71649566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7165d0609cedSBarry Smith PetscOptionsEnd(); 7166abb89eb1SStefano Zampini } 7167abb89eb1SStefano Zampini } else if (ptype == MATPRODUCT_PtAP) { 7168abb89eb1SStefano Zampini if (product->api_user) { 7169d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 71709566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7171d0609cedSBarry Smith PetscOptionsEnd(); 7172abb89eb1SStefano Zampini } else { 7173d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 71749566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_pothbind", "Bind P_oth to CPU", "MatBindToCPU", mmdata->P_oth_bind, &mmdata->P_oth_bind, NULL)); 7175d0609cedSBarry Smith PetscOptionsEnd(); 71764e84afc0SStefano Zampini } 71774e84afc0SStefano Zampini } 71784e84afc0SStefano Zampini a = (Mat_MPIAIJ *)A->data; 71794e84afc0SStefano Zampini p = (Mat_MPIAIJ *)P->data; 71809566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, m, n, M, N)); 71819566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->rmap)); 71829566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(C->cmap)); 71839566063dSJacob Faibussowitsch PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 71849566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(C, &prefix)); 7185ddea5d60SJunchao Zhang 7186ddea5d60SJunchao Zhang cp = 0; 71874e84afc0SStefano Zampini switch (ptype) { 71884e84afc0SStefano Zampini case MATPRODUCT_AB: /* A * P */ 71899566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 71904e84afc0SStefano Zampini 7191ddea5d60SJunchao Zhang /* A_diag * P_local (merged or not) */ 7192ddea5d60SJunchao Zhang if (mmdata->abmerge) { /* P's diagonal and off-diag blocks are merged to one matrix, then multiplied by A_diag */ 71934e84afc0SStefano Zampini /* P is product->B */ 71949566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 71959566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 71969566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 71979566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 71989566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 71999566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72009566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72014e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72029566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72039566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72049566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72054e84afc0SStefano Zampini rmapt[cp] = 1; 72064e84afc0SStefano Zampini cmapt[cp] = 2; 72074e84afc0SStefano Zampini cmapa[cp] = globidx; 72084e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72094e84afc0SStefano Zampini cp++; 7210ddea5d60SJunchao Zhang } else { /* A_diag * P_diag and A_diag * P_off */ 72119566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &mp[cp])); 72129566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72139566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72149566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72159566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72169566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72174e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72189566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72199566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72204e84afc0SStefano Zampini rmapt[cp] = 1; 72214e84afc0SStefano Zampini cmapt[cp] = 1; 72224e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72234e84afc0SStefano Zampini cp++; 72249566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->B, NULL, &mp[cp])); 72259566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72269566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72279566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72289566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72299566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72304e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72319566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72329566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72334e84afc0SStefano Zampini rmapt[cp] = 1; 72344e84afc0SStefano Zampini cmapt[cp] = 2; 72354e84afc0SStefano Zampini cmapa[cp] = p->garray; 72364e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72374e84afc0SStefano Zampini cp++; 72384e84afc0SStefano Zampini } 7239ddea5d60SJunchao Zhang 7240ddea5d60SJunchao Zhang /* A_off * P_other */ 72414e84afc0SStefano Zampini if (mmdata->P_oth) { 72429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); /* make P_oth use local col ids */ 72439566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7244f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 72459566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 72469566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 72479566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 72489566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72499566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72509566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72519566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72524e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72539566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72549566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72554e84afc0SStefano Zampini rmapt[cp] = 1; 72564e84afc0SStefano Zampini cmapt[cp] = 2; 72574e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 72584e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72594e84afc0SStefano Zampini cp++; 72604e84afc0SStefano Zampini } 72614e84afc0SStefano Zampini break; 7262ddea5d60SJunchao Zhang 72634e84afc0SStefano Zampini case MATPRODUCT_AtB: /* (P^t * A): P_diag * A_loc + P_off * A_loc */ 72644e84afc0SStefano Zampini /* A is product->B */ 72659566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(A, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 7266ddea5d60SJunchao Zhang if (A == P) { /* when A==P, we can take advantage of the already merged mmdata->Bloc */ 72679566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mmdata->Bloc, NULL, &mp[cp])); 72689566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 72699566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72709566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72719566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72729566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72734e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72749566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72759566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72769566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72774e84afc0SStefano Zampini rmapt[cp] = 2; 72784e84afc0SStefano Zampini rmapa[cp] = globidx; 72794e84afc0SStefano Zampini cmapt[cp] = 2; 72804e84afc0SStefano Zampini cmapa[cp] = globidx; 72814e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72824e84afc0SStefano Zampini cp++; 72834e84afc0SStefano Zampini } else { 72849566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->A, mmdata->Bloc, NULL, &mp[cp])); 72859566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 72869566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 72879566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 72889566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 72899566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 72904e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 72919566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 72929566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 72939566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 72944e84afc0SStefano Zampini rmapt[cp] = 1; 72954e84afc0SStefano Zampini cmapt[cp] = 2; 72964e84afc0SStefano Zampini cmapa[cp] = globidx; 72974e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 72984e84afc0SStefano Zampini cp++; 72999566063dSJacob Faibussowitsch PetscCall(MatProductCreate(p->B, mmdata->Bloc, NULL, &mp[cp])); 73009566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73019566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73029566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73039566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73049566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73054e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73069566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73079566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73084e84afc0SStefano Zampini rmapt[cp] = 2; 73094e84afc0SStefano Zampini rmapa[cp] = p->garray; 73104e84afc0SStefano Zampini cmapt[cp] = 2; 73114e84afc0SStefano Zampini cmapa[cp] = globidx; 73124e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73134e84afc0SStefano Zampini cp++; 73144e84afc0SStefano Zampini } 73154e84afc0SStefano Zampini break; 73164e84afc0SStefano Zampini case MATPRODUCT_PtAP: 73179566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &mmdata->startsj_s, &mmdata->startsj_r, &mmdata->bufa, &mmdata->P_oth)); 73184e84afc0SStefano Zampini /* P is product->B */ 73199566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMatMerge(P, MAT_INITIAL_MATRIX, &glob, &mmdata->Bloc)); 73209566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, mmdata->Bloc, NULL, &mp[cp])); 73219566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_PtAP)); 73229566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73239566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73249566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73259566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73264e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73279566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73289566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73299566063dSJacob Faibussowitsch PetscCall(ISGetIndices(glob, &globidx)); 73304e84afc0SStefano Zampini rmapt[cp] = 2; 73314e84afc0SStefano Zampini rmapa[cp] = globidx; 73324e84afc0SStefano Zampini cmapt[cp] = 2; 73334e84afc0SStefano Zampini cmapa[cp] = globidx; 73344e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73354e84afc0SStefano Zampini cp++; 73364e84afc0SStefano Zampini if (mmdata->P_oth) { 73379566063dSJacob Faibussowitsch PetscCall(MatSeqAIJCompactOutExtraColumns_SeqAIJ(mmdata->P_oth, &P_oth_l2g)); 73389566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingGetIndices(P_oth_l2g, &P_oth_idx)); 7339f4f49eeaSPierre Jolivet PetscCall(MatSetType(mmdata->P_oth, ((PetscObject)a->B)->type_name)); 73409566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(mmdata->P_oth, mmdata->P_oth_bind)); 73419566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->B, mmdata->P_oth, NULL, &mp[cp])); 73429566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AB)); 73439566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73449566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73459566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73469566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73474e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73489566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73499566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73504e84afc0SStefano Zampini mptmp[cp] = PETSC_TRUE; 73514e84afc0SStefano Zampini cp++; 73529566063dSJacob Faibussowitsch PetscCall(MatProductCreate(mmdata->Bloc, mp[1], NULL, &mp[cp])); 73539566063dSJacob Faibussowitsch PetscCall(MatProductSetType(mp[cp], MATPRODUCT_AtB)); 73549566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(mp[cp], product->fill)); 73559566063dSJacob Faibussowitsch PetscCall(PetscSNPrintf(pprefix, sizeof(pprefix), "backend_p%" PetscInt_FMT "_", cp)); 73569566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(mp[cp], prefix)); 73579566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(mp[cp], pprefix)); 73584e84afc0SStefano Zampini mp[cp]->product->api_user = product->api_user; 73599566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(mp[cp])); 73609566063dSJacob Faibussowitsch PetscCall((*mp[cp]->ops->productsymbolic)(mp[cp])); 73614e84afc0SStefano Zampini rmapt[cp] = 2; 73624e84afc0SStefano Zampini rmapa[cp] = globidx; 73634e84afc0SStefano Zampini cmapt[cp] = 2; 73644e84afc0SStefano Zampini cmapa[cp] = P_oth_idx; 73654e84afc0SStefano Zampini mptmp[cp] = PETSC_FALSE; 73664e84afc0SStefano Zampini cp++; 73674e84afc0SStefano Zampini } 73684e84afc0SStefano Zampini break; 7369d71ae5a4SJacob Faibussowitsch default: 7370d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for product type %s", MatProductTypes[ptype]); 73714e84afc0SStefano Zampini } 73724e84afc0SStefano Zampini /* sanity check */ 73739371c9d4SSatish Balay if (size > 1) 73749371c9d4SSatish Balay for (i = 0; i < cp; i++) PetscCheck(rmapt[i] != 2 || hasoffproc, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Unexpected offproc map type for product %" PetscInt_FMT, i); 73754e84afc0SStefano Zampini 73769566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cp, &mmdata->mp, cp, &mmdata->mptmp)); 7377ddea5d60SJunchao Zhang for (i = 0; i < cp; i++) { 7378ddea5d60SJunchao Zhang mmdata->mp[i] = mp[i]; 7379ddea5d60SJunchao Zhang mmdata->mptmp[i] = mptmp[i]; 7380ddea5d60SJunchao Zhang } 73814e84afc0SStefano Zampini mmdata->cp = cp; 73824e84afc0SStefano Zampini C->product->data = mmdata; 7383cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MatMatMPIAIJBACKEND; 73844e84afc0SStefano Zampini C->ops->productnumeric = MatProductNumeric_MPIAIJBACKEND; 73854e84afc0SStefano Zampini 7386c215019aSStefano Zampini /* memory type */ 7387c215019aSStefano Zampini mmdata->mtype = PETSC_MEMTYPE_HOST; 73889566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iscuda, MATSEQAIJCUSPARSE, MATMPIAIJCUSPARSE, "")); 7389d5e393b6SSuyash Tandon PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iship, MATSEQAIJHIPSPARSE, MATMPIAIJHIPSPARSE, "")); 73909566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &iskokk, MATSEQAIJKOKKOS, MATMPIAIJKOKKOS, "")); 7391c215019aSStefano Zampini if (iscuda) mmdata->mtype = PETSC_MEMTYPE_CUDA; 7392d5e393b6SSuyash Tandon else if (iship) mmdata->mtype = PETSC_MEMTYPE_HIP; 73933214990dSStefano Zampini else if (iskokk) mmdata->mtype = PETSC_MEMTYPE_KOKKOS; 7394c215019aSStefano Zampini 73954e84afc0SStefano Zampini /* prepare coo coordinates for values insertion */ 7396ddea5d60SJunchao Zhang 7397ddea5d60SJunchao Zhang /* count total nonzeros of those intermediate seqaij Mats 7398ddea5d60SJunchao Zhang ncoo_d: # of nonzeros of matrices that do not have offproc entries 7399ddea5d60SJunchao Zhang ncoo_o: # of nonzeros (of matrices that might have offproc entries) that will be inserted to remote procs 7400ddea5d60SJunchao Zhang ncoo_oown: # of nonzeros (of matrices that might have offproc entries) that will be inserted locally 7401ddea5d60SJunchao Zhang */ 74024e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0, ncoo_o = 0, ncoo_oown = 0; cp < mmdata->cp; cp++) { 74034e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74044e84afc0SStefano Zampini if (mptmp[cp]) continue; 7405ddea5d60SJunchao Zhang if (rmapt[cp] == 2 && hasoffproc) { /* the rows need to be scatter to all processes (might include self) */ 74064e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74074e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74084e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74094e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74104e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74114e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74124e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74134e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7414ddea5d60SJunchao Zhang if (gr < rs || gr >= re) ncoo_o += nz; /* this row is offproc */ 7415ddea5d60SJunchao Zhang else ncoo_oown += nz; /* this row is local */ 74164e84afc0SStefano Zampini } 74174e84afc0SStefano Zampini } else ncoo_d += mm->nz; 74184e84afc0SStefano Zampini } 7419ddea5d60SJunchao Zhang 7420ddea5d60SJunchao Zhang /* 7421ddea5d60SJunchao Zhang ncoo: total number of nonzeros (including those inserted by remote procs) belonging to this proc 7422ddea5d60SJunchao Zhang 7423ddea5d60SJunchao Zhang ncoo = ncoo_d + ncoo_oown + ncoo2, which ncoo2 is number of nonzeros inserted to me by other procs. 7424ddea5d60SJunchao Zhang 7425d5b43468SJose E. Roman off[0] points to a big index array, which is shared by off[1,2,...]. Similarly, for own[0]. 7426ddea5d60SJunchao Zhang 7427ddea5d60SJunchao Zhang off[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert to others 7428ddea5d60SJunchao Zhang own[p]: points to the segment for matrix mp[p], storing location of nonzeros that mp[p] will insert locally 7429ddea5d60SJunchao Zhang so, off[p+1]-off[p] is the number of nonzeros that mp[p] will send to others. 7430ddea5d60SJunchao Zhang 7431ddea5d60SJunchao Zhang coo_i/j/v[]: [ncoo] row/col/val of nonzeros belonging to this proc. 7432da81f932SPierre Jolivet Ex. coo_i[]: the beginning part (of size ncoo_d + ncoo_oown) stores i of local nonzeros, and the remaining part stores i of nonzeros I will receive. 7433ddea5d60SJunchao Zhang */ 74349566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->off)); /* +1 to make a csr-like data structure */ 74359566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mmdata->cp + 1, &mmdata->own)); 7436ddea5d60SJunchao Zhang 7437ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted by remote procs */ 7438ddea5d60SJunchao Zhang if (hasoffproc) { 74394e84afc0SStefano Zampini PetscSF msf; 74404e84afc0SStefano Zampini PetscInt ncoo2, *coo_i2, *coo_j2; 74414e84afc0SStefano Zampini 74429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_o, &mmdata->off[0])); 74439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ncoo_oown, &mmdata->own[0])); 74449566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo_o, &coo_i, ncoo_o, &coo_j)); /* to collect (i,j) of entries to be sent to others */ 7445ddea5d60SJunchao Zhang 74464e84afc0SStefano Zampini for (cp = 0, ncoo_o = 0; cp < mmdata->cp; cp++) { 74474e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 74484e84afc0SStefano Zampini PetscInt *idxoff = mmdata->off[cp]; 74494e84afc0SStefano Zampini PetscInt *idxown = mmdata->own[cp]; 7450ddea5d60SJunchao Zhang if (!mptmp[cp] && rmapt[cp] == 2) { /* row map is sparse */ 74514e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 74524e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 74534e84afc0SStefano Zampini const PetscInt *ii = mm->i; 74544e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_o; 74554e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_o; 74564e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 74574e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 74584e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 74594e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 74604e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 74614e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 74624e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 74634e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7464ddea5d60SJunchao Zhang if (gr < rs || gr >= re) { /* this is an offproc row */ 74654e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) { 74664e84afc0SStefano Zampini *coi++ = gr; 74674e84afc0SStefano Zampini *idxoff++ = j; 74684e84afc0SStefano Zampini } 74694e84afc0SStefano Zampini if (!cmapt[cp]) { /* already global */ 74704e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 74714e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 74724e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 74734e84afc0SStefano Zampini } else { /* offdiag */ 74744e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 74754e84afc0SStefano Zampini } 74764e84afc0SStefano Zampini ncoo_o += nz; 7477ddea5d60SJunchao Zhang } else { /* this is a local row */ 74784e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *idxown++ = j; 74794e84afc0SStefano Zampini } 74804e84afc0SStefano Zampini } 74814e84afc0SStefano Zampini } 74824e84afc0SStefano Zampini mmdata->off[cp + 1] = idxoff; 74834e84afc0SStefano Zampini mmdata->own[cp + 1] = idxown; 74844e84afc0SStefano Zampini } 74854e84afc0SStefano Zampini 74869566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 74876497c311SBarry Smith PetscInt incoo_o; 74886497c311SBarry Smith PetscCall(PetscIntCast(ncoo_o, &incoo_o)); 74896497c311SBarry Smith PetscCall(PetscSFSetGraphLayout(mmdata->sf, C->rmap, incoo_o /*nleaves*/, NULL /*ilocal*/, PETSC_OWN_POINTER, coo_i)); 74909566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(mmdata->sf, &msf)); 74919566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &ncoo2 /*nroots*/, NULL, NULL, NULL)); 74924e84afc0SStefano Zampini ncoo = ncoo_d + ncoo_oown + ncoo2; 74939566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i2, ncoo, &coo_j2)); 74949566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); /* put (i,j) of remote nonzeros at back */ 74959566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_i, coo_i2 + ncoo_d + ncoo_oown)); 74969566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 74979566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(mmdata->sf, MPIU_INT, coo_j, coo_j2 + ncoo_d + ncoo_oown)); 74989566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 7499ddea5d60SJunchao Zhang /* allocate MPI send buffer to collect nonzero values to be sent to remote procs */ 75009566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo_o * sizeof(PetscScalar), (void **)&mmdata->coo_w)); 75014e84afc0SStefano Zampini coo_i = coo_i2; 75024e84afc0SStefano Zampini coo_j = coo_j2; 75034e84afc0SStefano Zampini } else { /* no offproc values insertion */ 75044e84afc0SStefano Zampini ncoo = ncoo_d; 75059566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(ncoo, &coo_i, ncoo, &coo_j)); 7506c215019aSStefano Zampini 75079566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)C), &mmdata->sf)); 75089566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(mmdata->sf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 75099566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(mmdata->sf)); 75104e84afc0SStefano Zampini } 7511c215019aSStefano Zampini mmdata->hasoffproc = hasoffproc; 75124e84afc0SStefano Zampini 7513ddea5d60SJunchao Zhang /* gather (i,j) of nonzeros inserted locally */ 75144e84afc0SStefano Zampini for (cp = 0, ncoo_d = 0; cp < mmdata->cp; cp++) { 75154e84afc0SStefano Zampini Mat_SeqAIJ *mm = (Mat_SeqAIJ *)mp[cp]->data; 75164e84afc0SStefano Zampini PetscInt *coi = coo_i + ncoo_d; 75174e84afc0SStefano Zampini PetscInt *coj = coo_j + ncoo_d; 75184e84afc0SStefano Zampini const PetscInt *jj = mm->j; 75194e84afc0SStefano Zampini const PetscInt *ii = mm->i; 75204e84afc0SStefano Zampini const PetscInt *cmap = cmapa[cp]; 75214e84afc0SStefano Zampini const PetscInt *rmap = rmapa[cp]; 75224e84afc0SStefano Zampini const PetscInt mr = mp[cp]->rmap->n; 75234e84afc0SStefano Zampini const PetscInt rs = C->rmap->rstart; 75244e84afc0SStefano Zampini const PetscInt re = C->rmap->rend; 75254e84afc0SStefano Zampini const PetscInt cs = C->cmap->rstart; 75264e84afc0SStefano Zampini 75274e84afc0SStefano Zampini if (mptmp[cp]) continue; 7528ddea5d60SJunchao Zhang if (rmapt[cp] == 1) { /* consecutive rows */ 7529ddea5d60SJunchao Zhang /* fill coo_i */ 75304e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75314e84afc0SStefano Zampini const PetscInt gr = i + rs; 75324e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) coi[j] = gr; 75334e84afc0SStefano Zampini } 7534ddea5d60SJunchao Zhang /* fill coo_j */ 7535ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75369566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(coj, jj, mm->nz)); 7537ddea5d60SJunchao Zhang } else if (cmapt[cp] == 1) { /* type-1, local to global for consecutive columns of C */ 7538ddea5d60SJunchao Zhang for (j = 0; j < mm->nz; j++) coj[j] = jj[j] + cs; /* lid + col start */ 7539ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75404e84afc0SStefano Zampini for (j = 0; j < mm->nz; j++) coj[j] = cmap[jj[j]]; 75414e84afc0SStefano Zampini } 75424e84afc0SStefano Zampini ncoo_d += mm->nz; 7543ddea5d60SJunchao Zhang } else if (rmapt[cp] == 2) { /* sparse rows */ 75444e84afc0SStefano Zampini for (i = 0; i < mr; i++) { 75454e84afc0SStefano Zampini const PetscInt *jj = mm->j + ii[i]; 75464e84afc0SStefano Zampini const PetscInt gr = rmap[i]; 75474e84afc0SStefano Zampini const PetscInt nz = ii[i + 1] - ii[i]; 7548ddea5d60SJunchao Zhang if (gr >= rs && gr < re) { /* local rows */ 75494e84afc0SStefano Zampini for (j = ii[i]; j < ii[i + 1]; j++) *coi++ = gr; 7550ddea5d60SJunchao Zhang if (!cmapt[cp]) { /* type-0, already global */ 75514e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j]; 75524e84afc0SStefano Zampini } else if (cmapt[cp] == 1) { /* local to global for owned columns of C */ 75534e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = jj[j] + cs; 7554ddea5d60SJunchao Zhang } else { /* type-2, local to global for sparse columns */ 75554e84afc0SStefano Zampini for (j = 0; j < nz; j++) *coj++ = cmap[jj[j]]; 75564e84afc0SStefano Zampini } 75574e84afc0SStefano Zampini ncoo_d += nz; 75584e84afc0SStefano Zampini } 75594e84afc0SStefano Zampini } 75604e84afc0SStefano Zampini } 75614e84afc0SStefano Zampini } 756248a46eb9SPierre Jolivet if (glob) PetscCall(ISRestoreIndices(glob, &globidx)); 75639566063dSJacob Faibussowitsch PetscCall(ISDestroy(&glob)); 756448a46eb9SPierre Jolivet if (P_oth_l2g) PetscCall(ISLocalToGlobalMappingRestoreIndices(P_oth_l2g, &P_oth_idx)); 75659566063dSJacob Faibussowitsch PetscCall(ISLocalToGlobalMappingDestroy(&P_oth_l2g)); 7566ddea5d60SJunchao Zhang /* allocate an array to store all nonzeros (inserted locally or remotely) belonging to this proc */ 75679566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(mmdata->sf, mmdata->mtype, ncoo * sizeof(PetscScalar), (void **)&mmdata->coo_v)); 75684e84afc0SStefano Zampini 756939cfb508SMark Adams /* set block sizes */ 757039cfb508SMark Adams A = product->A; 757139cfb508SMark Adams P = product->B; 757239cfb508SMark Adams switch (ptype) { 757339cfb508SMark Adams case MATPRODUCT_PtAP: 757458b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->cmap->bs, P->cmap->bs)); 757539cfb508SMark Adams break; 757639cfb508SMark Adams case MATPRODUCT_RARt: 757758b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->rmap->bs, P->rmap->bs)); 757839cfb508SMark Adams break; 757939cfb508SMark Adams case MATPRODUCT_ABC: 758039cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, product->C)); 758139cfb508SMark Adams break; 758239cfb508SMark Adams case MATPRODUCT_AB: 758339cfb508SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, P)); 758439cfb508SMark Adams break; 758539cfb508SMark Adams case MATPRODUCT_AtB: 758658b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->cmap->bs, P->cmap->bs)); 758739cfb508SMark Adams break; 758839cfb508SMark Adams case MATPRODUCT_ABt: 758958b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, A->rmap->bs, P->rmap->bs)); 759039cfb508SMark Adams break; 759139cfb508SMark Adams default: 759239cfb508SMark Adams SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Not for ProductType %s", MatProductTypes[ptype]); 759339cfb508SMark Adams } 759439cfb508SMark Adams 75954e84afc0SStefano Zampini /* preallocate with COO data */ 75969566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO(C, ncoo, coo_i, coo_j)); 75979566063dSJacob Faibussowitsch PetscCall(PetscFree2(coo_i, coo_j)); 75983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 75994e84afc0SStefano Zampini } 76004e84afc0SStefano Zampini 7601d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_MPIAIJBACKEND(Mat mat) 7602d71ae5a4SJacob Faibussowitsch { 76034e84afc0SStefano Zampini Mat_Product *product = mat->product; 76044e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 76054e84afc0SStefano Zampini PetscBool match = PETSC_FALSE; 7606abb89eb1SStefano Zampini PetscBool usecpu = PETSC_FALSE; 76074e84afc0SStefano Zampini #else 76084e84afc0SStefano Zampini PetscBool match = PETSC_TRUE; 76094e84afc0SStefano Zampini #endif 76104e84afc0SStefano Zampini 76114e84afc0SStefano Zampini PetscFunctionBegin; 76124e84afc0SStefano Zampini MatCheckProduct(mat, 1); 76134e84afc0SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 761448a46eb9SPierre Jolivet if (!product->A->boundtocpu && !product->B->boundtocpu) PetscCall(PetscObjectTypeCompare((PetscObject)product->B, ((PetscObject)product->A)->type_name, &match)); 761565e4b4d4SStefano Zampini if (match) { /* we can always fallback to the CPU if requested */ 7616abb89eb1SStefano Zampini switch (product->type) { 7617abb89eb1SStefano Zampini case MATPRODUCT_AB: 7618abb89eb1SStefano Zampini if (product->api_user) { 7619d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatMatMult", "Mat"); 76209566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matmatmult_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7621d0609cedSBarry Smith PetscOptionsEnd(); 7622abb89eb1SStefano Zampini } else { 7623d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AB", "Mat"); 76249566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatMatMult", usecpu, &usecpu, NULL)); 7625d0609cedSBarry Smith PetscOptionsEnd(); 7626abb89eb1SStefano Zampini } 7627abb89eb1SStefano Zampini break; 7628abb89eb1SStefano Zampini case MATPRODUCT_AtB: 7629abb89eb1SStefano Zampini if (product->api_user) { 7630d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatTransposeMatMult", "Mat"); 76319566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mattransposematmult_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7632d0609cedSBarry Smith PetscOptionsEnd(); 7633abb89eb1SStefano Zampini } else { 7634d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_AtB", "Mat"); 76359566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatTransposeMatMult", usecpu, &usecpu, NULL)); 7636d0609cedSBarry Smith PetscOptionsEnd(); 7637abb89eb1SStefano Zampini } 7638abb89eb1SStefano Zampini break; 7639abb89eb1SStefano Zampini case MATPRODUCT_PtAP: 7640abb89eb1SStefano Zampini if (product->api_user) { 7641d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatPtAP", "Mat"); 76429566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-matptap_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7643d0609cedSBarry Smith PetscOptionsEnd(); 7644abb89eb1SStefano Zampini } else { 7645d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)mat), ((PetscObject)mat)->prefix, "MatProduct_PtAP", "Mat"); 76469566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_product_algorithm_backend_cpu", "Use CPU code", "MatPtAP", usecpu, &usecpu, NULL)); 7647d0609cedSBarry Smith PetscOptionsEnd(); 7648abb89eb1SStefano Zampini } 7649abb89eb1SStefano Zampini break; 7650d71ae5a4SJacob Faibussowitsch default: 7651d71ae5a4SJacob Faibussowitsch break; 7652abb89eb1SStefano Zampini } 7653abb89eb1SStefano Zampini match = (PetscBool)!usecpu; 7654abb89eb1SStefano Zampini } 76554e84afc0SStefano Zampini #endif 76564e84afc0SStefano Zampini if (match) { 76574e84afc0SStefano Zampini switch (product->type) { 76584e84afc0SStefano Zampini case MATPRODUCT_AB: 76594e84afc0SStefano Zampini case MATPRODUCT_AtB: 7660d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 7661d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_MPIAIJBACKEND; 7662d71ae5a4SJacob Faibussowitsch break; 7663d71ae5a4SJacob Faibussowitsch default: 7664d71ae5a4SJacob Faibussowitsch break; 76654e84afc0SStefano Zampini } 76664e84afc0SStefano Zampini } 76674e84afc0SStefano Zampini /* fallback to MPIAIJ ops */ 76689566063dSJacob Faibussowitsch if (!mat->ops->productsymbolic) PetscCall(MatProductSetFromOptions_MPIAIJ(mat)); 76693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 767081824310SBarry Smith } 767198921bdaSJacob Faibussowitsch 767298921bdaSJacob Faibussowitsch /* 767372833a62Smarkadams4 Produces a set of block column indices of the matrix row, one for each block represented in the original row 767472833a62Smarkadams4 767572833a62Smarkadams4 n - the number of block indices in cc[] 767672833a62Smarkadams4 cc - the block indices (must be large enough to contain the indices) 767772833a62Smarkadams4 */ 7678d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRow(Mat Amat, PetscInt row, PetscInt bs, PetscInt *n, PetscInt *cc) 7679d71ae5a4SJacob Faibussowitsch { 768072833a62Smarkadams4 PetscInt cnt = -1, nidx, j; 768172833a62Smarkadams4 const PetscInt *idx; 768272833a62Smarkadams4 768372833a62Smarkadams4 PetscFunctionBegin; 768472833a62Smarkadams4 PetscCall(MatGetRow(Amat, row, &nidx, &idx, NULL)); 768572833a62Smarkadams4 if (nidx) { 768672833a62Smarkadams4 cnt = 0; 768772833a62Smarkadams4 cc[cnt] = idx[0] / bs; 768872833a62Smarkadams4 for (j = 1; j < nidx; j++) { 768972833a62Smarkadams4 if (cc[cnt] < idx[j] / bs) cc[++cnt] = idx[j] / bs; 769072833a62Smarkadams4 } 769172833a62Smarkadams4 } 769272833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, row, &nidx, &idx, NULL)); 769372833a62Smarkadams4 *n = cnt + 1; 76943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 769572833a62Smarkadams4 } 769672833a62Smarkadams4 769772833a62Smarkadams4 /* 769872833a62Smarkadams4 Produces a set of block column indices of the matrix block row, one for each block represented in the original set of rows 769972833a62Smarkadams4 770072833a62Smarkadams4 ncollapsed - the number of block indices 770172833a62Smarkadams4 collapsed - the block indices (must be large enough to contain the indices) 770272833a62Smarkadams4 */ 7703d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatCollapseRows(Mat Amat, PetscInt start, PetscInt bs, PetscInt *w0, PetscInt *w1, PetscInt *w2, PetscInt *ncollapsed, PetscInt **collapsed) 7704d71ae5a4SJacob Faibussowitsch { 770572833a62Smarkadams4 PetscInt i, nprev, *cprev = w0, ncur = 0, *ccur = w1, *merged = w2, *cprevtmp; 770672833a62Smarkadams4 770772833a62Smarkadams4 PetscFunctionBegin; 770872833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, start, bs, &nprev, cprev)); 770972833a62Smarkadams4 for (i = start + 1; i < start + bs; i++) { 771072833a62Smarkadams4 PetscCall(MatCollapseRow(Amat, i, bs, &ncur, ccur)); 771172833a62Smarkadams4 PetscCall(PetscMergeIntArray(nprev, cprev, ncur, ccur, &nprev, &merged)); 77129371c9d4SSatish Balay cprevtmp = cprev; 77139371c9d4SSatish Balay cprev = merged; 77149371c9d4SSatish Balay merged = cprevtmp; 771572833a62Smarkadams4 } 771672833a62Smarkadams4 *ncollapsed = nprev; 771772833a62Smarkadams4 if (collapsed) *collapsed = cprev; 77183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771972833a62Smarkadams4 } 772072833a62Smarkadams4 77212d776b49SBarry Smith /* 772272833a62Smarkadams4 MatCreateGraph_Simple_AIJ - create simple scalar matrix (graph) from potentially blocked matrix 772372833a62Smarkadams4 772472833a62Smarkadams4 Input Parameter: 772572833a62Smarkadams4 . Amat - matrix 772672833a62Smarkadams4 - symmetrize - make the result symmetric 772772833a62Smarkadams4 + scale - scale with diagonal 772872833a62Smarkadams4 772972833a62Smarkadams4 Output Parameter: 773072833a62Smarkadams4 . a_Gmat - output scalar graph >= 0 773172833a62Smarkadams4 773272833a62Smarkadams4 */ 7733e02fb3cdSMark Adams PETSC_INTERN PetscErrorCode MatCreateGraph_Simple_AIJ(Mat Amat, PetscBool symmetrize, PetscBool scale, PetscReal filter, PetscInt index_size, PetscInt index[], Mat *a_Gmat) 7734d71ae5a4SJacob Faibussowitsch { 773572833a62Smarkadams4 PetscInt Istart, Iend, Ii, jj, kk, ncols, nloc, NN, MM, bs; 773672833a62Smarkadams4 MPI_Comm comm; 773772833a62Smarkadams4 Mat Gmat; 773872833a62Smarkadams4 PetscBool ismpiaij, isseqaij; 773972833a62Smarkadams4 Mat a, b, c; 774072833a62Smarkadams4 MatType jtype; 774172833a62Smarkadams4 774272833a62Smarkadams4 PetscFunctionBegin; 774372833a62Smarkadams4 PetscCall(PetscObjectGetComm((PetscObject)Amat, &comm)); 774472833a62Smarkadams4 PetscCall(MatGetOwnershipRange(Amat, &Istart, &Iend)); 774572833a62Smarkadams4 PetscCall(MatGetSize(Amat, &MM, &NN)); 774672833a62Smarkadams4 PetscCall(MatGetBlockSize(Amat, &bs)); 774772833a62Smarkadams4 nloc = (Iend - Istart) / bs; 774872833a62Smarkadams4 774972833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATSEQAIJ, &isseqaij)); 775072833a62Smarkadams4 PetscCall(PetscObjectBaseTypeCompare((PetscObject)Amat, MATMPIAIJ, &ismpiaij)); 775172833a62Smarkadams4 PetscCheck(isseqaij || ismpiaij, comm, PETSC_ERR_USER, "Require (MPI)AIJ matrix type"); 775272833a62Smarkadams4 775372833a62Smarkadams4 /* TODO GPU: these calls are potentially expensive if matrices are large and we want to use the GPU */ 775472833a62Smarkadams4 /* A solution consists in providing a new API, MatAIJGetCollapsedAIJ, and each class can provide a fast 775572833a62Smarkadams4 implementation */ 775672833a62Smarkadams4 if (bs > 1) { 775772833a62Smarkadams4 PetscCall(MatGetType(Amat, &jtype)); 775872833a62Smarkadams4 PetscCall(MatCreate(comm, &Gmat)); 775972833a62Smarkadams4 PetscCall(MatSetType(Gmat, jtype)); 776072833a62Smarkadams4 PetscCall(MatSetSizes(Gmat, nloc, nloc, PETSC_DETERMINE, PETSC_DETERMINE)); 776172833a62Smarkadams4 PetscCall(MatSetBlockSizes(Gmat, 1, 1)); 776272833a62Smarkadams4 if (isseqaij || ((Mat_MPIAIJ *)Amat->data)->garray) { 776372833a62Smarkadams4 PetscInt *d_nnz, *o_nnz; 77642cf69117Smarkadams4 MatScalar *aa, val, *AA; 77652cf69117Smarkadams4 PetscInt *aj, *ai, *AJ, nc, nmax = 0; 77666497c311SBarry Smith 77679371c9d4SSatish Balay if (isseqaij) { 77689371c9d4SSatish Balay a = Amat; 77699371c9d4SSatish Balay b = NULL; 77709371c9d4SSatish Balay } else { 777172833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Amat->data; 77729371c9d4SSatish Balay a = d->A; 77739371c9d4SSatish Balay b = d->B; 777472833a62Smarkadams4 } 777572833a62Smarkadams4 PetscCall(PetscInfo(Amat, "New bs>1 Graph. nloc=%" PetscInt_FMT "\n", nloc)); 777632603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 777772833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 77782cf69117Smarkadams4 PetscInt *nnz = (c == a) ? d_nnz : o_nnz; 777959ee9f9fSPierre Jolivet const PetscInt *cols1, *cols2; 77806497c311SBarry Smith 778159ee9f9fSPierre Jolivet for (PetscInt brow = 0, nc1, nc2, ok = 1; brow < nloc * bs; brow += bs) { // block rows 778259ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow, &nc2, &cols2, NULL)); 778359ee9f9fSPierre Jolivet nnz[brow / bs] = nc2 / bs; 778459ee9f9fSPierre Jolivet if (nc2 % bs) ok = 0; 778572833a62Smarkadams4 if (nnz[brow / bs] > nmax) nmax = nnz[brow / bs]; 778659ee9f9fSPierre Jolivet for (PetscInt ii = 1; ii < bs; ii++) { // check for non-dense blocks 778759ee9f9fSPierre Jolivet PetscCall(MatGetRow(c, brow + ii, &nc1, &cols1, NULL)); 778859ee9f9fSPierre Jolivet if (nc1 != nc2) ok = 0; 778959ee9f9fSPierre Jolivet else { 779059ee9f9fSPierre Jolivet for (PetscInt jj = 0; jj < nc1 && ok == 1; jj++) { 779159ee9f9fSPierre Jolivet if (cols1[jj] != cols2[jj]) ok = 0; 779259ee9f9fSPierre Jolivet if (cols1[jj] % bs != jj % bs) ok = 0; 779372833a62Smarkadams4 } 779459ee9f9fSPierre Jolivet } 779559ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow + ii, &nc1, &cols1, NULL)); 779659ee9f9fSPierre Jolivet } 779759ee9f9fSPierre Jolivet PetscCall(MatRestoreRow(c, brow, &nc2, &cols2, NULL)); 779872833a62Smarkadams4 if (!ok) { 779972833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 780059ee9f9fSPierre Jolivet PetscCall(PetscInfo(Amat, "Found sparse blocks - revert to slow method\n")); 780172833a62Smarkadams4 goto old_bs; 780272833a62Smarkadams4 } 780372833a62Smarkadams4 } 780472833a62Smarkadams4 } 780572833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 780672833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 780772833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 78082cf69117Smarkadams4 PetscCall(PetscMalloc2(nmax, &AA, nmax, &AJ)); 780972833a62Smarkadams4 // diag 781072833a62Smarkadams4 for (PetscInt brow = 0, n, grow; brow < nloc * bs; brow += bs) { // block rows 781172833a62Smarkadams4 Mat_SeqAIJ *aseq = (Mat_SeqAIJ *)a->data; 78126497c311SBarry Smith 781372833a62Smarkadams4 ai = aseq->i; 781472833a62Smarkadams4 n = ai[brow + 1] - ai[brow]; 781572833a62Smarkadams4 aj = aseq->j + ai[brow]; 78166497c311SBarry Smith for (PetscInt k = 0; k < n; k += bs) { // block columns 781772833a62Smarkadams4 AJ[k / bs] = aj[k] / bs + Istart / bs; // diag starts at (Istart,Istart) 781872833a62Smarkadams4 val = 0; 7819e02fb3cdSMark Adams if (index_size == 0) { 78206497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 782172833a62Smarkadams4 aa = aseq->a + ai[brow + ii] + k; 78226497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // columns in block 782372833a62Smarkadams4 val += PetscAbs(PetscRealPart(aa[jj])); // a sort of norm 782472833a62Smarkadams4 } 782572833a62Smarkadams4 } 7826e02fb3cdSMark Adams } else { // use (index,index) value if provided 78276497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78286497c311SBarry Smith PetscInt ii = index[iii]; 7829e02fb3cdSMark Adams aa = aseq->a + ai[brow + ii] + k; 78306497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // columns in block 78316497c311SBarry Smith PetscInt jj = index[jjj]; 7832cd5bc9d0SMark Adams val += PetscAbs(PetscRealPart(aa[jj])); 7833e02fb3cdSMark Adams } 7834e02fb3cdSMark Adams } 7835e02fb3cdSMark Adams } 7836835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 783772833a62Smarkadams4 AA[k / bs] = val; 783872833a62Smarkadams4 } 783972833a62Smarkadams4 grow = Istart / bs + brow / bs; 784066521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, n / bs, AJ, AA, ADD_VALUES)); 784172833a62Smarkadams4 } 784272833a62Smarkadams4 // off-diag 784372833a62Smarkadams4 if (ismpiaij) { 784472833a62Smarkadams4 Mat_MPIAIJ *aij = (Mat_MPIAIJ *)Amat->data; 784572833a62Smarkadams4 const PetscScalar *vals; 784672833a62Smarkadams4 const PetscInt *cols, *garray = aij->garray; 78476497c311SBarry Smith 784872833a62Smarkadams4 PetscCheck(garray, PETSC_COMM_SELF, PETSC_ERR_USER, "No garray ?"); 784972833a62Smarkadams4 for (PetscInt brow = 0, grow; brow < nloc * bs; brow += bs) { // block rows 785072833a62Smarkadams4 PetscCall(MatGetRow(b, brow, &ncols, &cols, NULL)); 78516497c311SBarry Smith for (PetscInt k = 0, cidx = 0; k < ncols; k += bs, cidx++) { 785259ee9f9fSPierre Jolivet PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs >= nmax"); 785372833a62Smarkadams4 AA[k / bs] = 0; 785472833a62Smarkadams4 AJ[cidx] = garray[cols[k]] / bs; 785572833a62Smarkadams4 } 785672833a62Smarkadams4 nc = ncols / bs; 785772833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow, &ncols, &cols, NULL)); 7858e02fb3cdSMark Adams if (index_size == 0) { 78596497c311SBarry Smith for (PetscInt ii = 0; ii < bs; ii++) { // rows in block 786072833a62Smarkadams4 PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 78616497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 78626497c311SBarry Smith for (PetscInt jj = 0; jj < bs; jj++) { // cols in block 7863835f2295SStefano Zampini PetscAssert(k / bs < nmax, comm, PETSC_ERR_USER, "k / bs (%" PetscInt_FMT ") >= nmax (%" PetscInt_FMT ")", k / bs, nmax); 786472833a62Smarkadams4 AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 786572833a62Smarkadams4 } 786672833a62Smarkadams4 } 786772833a62Smarkadams4 PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 786872833a62Smarkadams4 } 7869e02fb3cdSMark Adams } else { // use (index,index) value if provided 78706497c311SBarry Smith for (PetscInt iii = 0; iii < index_size; iii++) { // rows in block 78716497c311SBarry Smith PetscInt ii = index[iii]; 7872e02fb3cdSMark Adams PetscCall(MatGetRow(b, brow + ii, &ncols, &cols, &vals)); 78736497c311SBarry Smith for (PetscInt k = 0; k < ncols; k += bs) { 78746497c311SBarry Smith for (PetscInt jjj = 0; jjj < index_size; jjj++) { // cols in block 78756497c311SBarry Smith PetscInt jj = index[jjj]; 7876e02fb3cdSMark Adams AA[k / bs] += PetscAbs(PetscRealPart(vals[k + jj])); 7877e02fb3cdSMark Adams } 7878e02fb3cdSMark Adams } 7879e02fb3cdSMark Adams PetscCall(MatRestoreRow(b, brow + ii, &ncols, &cols, &vals)); 7880e02fb3cdSMark Adams } 7881e02fb3cdSMark Adams } 788272833a62Smarkadams4 grow = Istart / bs + brow / bs; 788366521e1fSMark Adams PetscCall(MatSetValues(Gmat, 1, &grow, nc, AJ, AA, ADD_VALUES)); 788472833a62Smarkadams4 } 788572833a62Smarkadams4 } 788672833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 788772833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 78882cf69117Smarkadams4 PetscCall(PetscFree2(AA, AJ)); 788972833a62Smarkadams4 } else { 789072833a62Smarkadams4 const PetscScalar *vals; 789172833a62Smarkadams4 const PetscInt *idx; 789272833a62Smarkadams4 PetscInt *d_nnz, *o_nnz, *w0, *w1, *w2; 789372833a62Smarkadams4 old_bs: 789472833a62Smarkadams4 /* 789572833a62Smarkadams4 Determine the preallocation needed for the scalar matrix derived from the vector matrix. 789672833a62Smarkadams4 */ 789772833a62Smarkadams4 PetscCall(PetscInfo(Amat, "OLD bs>1 CreateGraph\n")); 789832603206SJames Wright PetscCall(PetscMalloc2(nloc, &d_nnz, (isseqaij ? 0 : nloc), &o_nnz)); 789972833a62Smarkadams4 if (isseqaij) { 790072833a62Smarkadams4 PetscInt max_d_nnz; 79016497c311SBarry Smith 790272833a62Smarkadams4 /* 790372833a62Smarkadams4 Determine exact preallocation count for (sequential) scalar matrix 790472833a62Smarkadams4 */ 790572833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Amat, &max_d_nnz)); 790672833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 790772833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 790848a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend; Ii += bs, jj++) PetscCall(MatCollapseRows(Amat, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 790972833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 791072833a62Smarkadams4 } else if (ismpiaij) { 791172833a62Smarkadams4 Mat Daij, Oaij; 791272833a62Smarkadams4 const PetscInt *garray; 791372833a62Smarkadams4 PetscInt max_d_nnz; 79146497c311SBarry Smith 791572833a62Smarkadams4 PetscCall(MatMPIAIJGetSeqAIJ(Amat, &Daij, &Oaij, &garray)); 791672833a62Smarkadams4 /* 791772833a62Smarkadams4 Determine exact preallocation count for diagonal block portion of scalar matrix 791872833a62Smarkadams4 */ 791972833a62Smarkadams4 PetscCall(MatSeqAIJGetMaxRowNonzeros(Daij, &max_d_nnz)); 792072833a62Smarkadams4 max_d_nnz = PetscMin(nloc, bs * max_d_nnz); 792172833a62Smarkadams4 PetscCall(PetscMalloc3(max_d_nnz, &w0, max_d_nnz, &w1, max_d_nnz, &w2)); 792248a46eb9SPierre Jolivet for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) PetscCall(MatCollapseRows(Daij, Ii, bs, w0, w1, w2, &d_nnz[jj], NULL)); 792372833a62Smarkadams4 PetscCall(PetscFree3(w0, w1, w2)); 792472833a62Smarkadams4 /* 792572833a62Smarkadams4 Over estimate (usually grossly over), preallocation count for off-diagonal portion of scalar matrix 792672833a62Smarkadams4 */ 792772833a62Smarkadams4 for (Ii = 0, jj = 0; Ii < Iend - Istart; Ii += bs, jj++) { 792872833a62Smarkadams4 o_nnz[jj] = 0; 792972833a62Smarkadams4 for (kk = 0; kk < bs; kk++) { /* rows that get collapsed to a single row */ 793072833a62Smarkadams4 PetscCall(MatGetRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 793172833a62Smarkadams4 o_nnz[jj] += ncols; 793272833a62Smarkadams4 PetscCall(MatRestoreRow(Oaij, Ii + kk, &ncols, NULL, NULL)); 793372833a62Smarkadams4 } 793472833a62Smarkadams4 if (o_nnz[jj] > (NN / bs - nloc)) o_nnz[jj] = NN / bs - nloc; 793572833a62Smarkadams4 } 793672833a62Smarkadams4 } else SETERRQ(comm, PETSC_ERR_USER, "Require AIJ matrix type"); 793772833a62Smarkadams4 /* get scalar copy (norms) of matrix */ 793872833a62Smarkadams4 PetscCall(MatSeqAIJSetPreallocation(Gmat, 0, d_nnz)); 793972833a62Smarkadams4 PetscCall(MatMPIAIJSetPreallocation(Gmat, 0, d_nnz, 0, o_nnz)); 794072833a62Smarkadams4 PetscCall(PetscFree2(d_nnz, o_nnz)); 794172833a62Smarkadams4 for (Ii = Istart; Ii < Iend; Ii++) { 794272833a62Smarkadams4 PetscInt dest_row = Ii / bs; 79436497c311SBarry Smith 794472833a62Smarkadams4 PetscCall(MatGetRow(Amat, Ii, &ncols, &idx, &vals)); 794572833a62Smarkadams4 for (jj = 0; jj < ncols; jj++) { 794672833a62Smarkadams4 PetscInt dest_col = idx[jj] / bs; 794772833a62Smarkadams4 PetscScalar sv = PetscAbs(PetscRealPart(vals[jj])); 79486497c311SBarry Smith 794972833a62Smarkadams4 PetscCall(MatSetValues(Gmat, 1, &dest_row, 1, &dest_col, &sv, ADD_VALUES)); 795072833a62Smarkadams4 } 795172833a62Smarkadams4 PetscCall(MatRestoreRow(Amat, Ii, &ncols, &idx, &vals)); 795272833a62Smarkadams4 } 795372833a62Smarkadams4 PetscCall(MatAssemblyBegin(Gmat, MAT_FINAL_ASSEMBLY)); 795472833a62Smarkadams4 PetscCall(MatAssemblyEnd(Gmat, MAT_FINAL_ASSEMBLY)); 795572833a62Smarkadams4 } 795672833a62Smarkadams4 } else { 79572d776b49SBarry Smith if (symmetrize || filter >= 0 || scale) PetscCall(MatDuplicate(Amat, MAT_COPY_VALUES, &Gmat)); 79582d776b49SBarry Smith else { 79592d776b49SBarry Smith Gmat = Amat; 79602d776b49SBarry Smith PetscCall(PetscObjectReference((PetscObject)Gmat)); 79612d776b49SBarry Smith } 79629371c9d4SSatish Balay if (isseqaij) { 79639371c9d4SSatish Balay a = Gmat; 79649371c9d4SSatish Balay b = NULL; 79659371c9d4SSatish Balay } else { 796672833a62Smarkadams4 Mat_MPIAIJ *d = (Mat_MPIAIJ *)Gmat->data; 79679371c9d4SSatish Balay a = d->A; 79689371c9d4SSatish Balay b = d->B; 796972833a62Smarkadams4 } 79702d776b49SBarry Smith if (filter >= 0 || scale) { 79712d776b49SBarry Smith /* take absolute value of each entry */ 797272833a62Smarkadams4 for (c = a, kk = 0; c && kk < 2; c = b, kk++) { 797372833a62Smarkadams4 MatInfo info; 797472833a62Smarkadams4 PetscScalar *avals; 79756497c311SBarry Smith 797672833a62Smarkadams4 PetscCall(MatGetInfo(c, MAT_LOCAL, &info)); 797772833a62Smarkadams4 PetscCall(MatSeqAIJGetArray(c, &avals)); 797872833a62Smarkadams4 for (int jj = 0; jj < info.nz_used; jj++) avals[jj] = PetscAbsScalar(avals[jj]); 797972833a62Smarkadams4 PetscCall(MatSeqAIJRestoreArray(c, &avals)); 798072833a62Smarkadams4 } 798172833a62Smarkadams4 } 79822d776b49SBarry Smith } 798372833a62Smarkadams4 if (symmetrize) { 7984b94d7dedSBarry Smith PetscBool isset, issym; 79856497c311SBarry Smith 7986b94d7dedSBarry Smith PetscCall(MatIsSymmetricKnown(Amat, &isset, &issym)); 7987b94d7dedSBarry Smith if (!isset || !issym) { 798872833a62Smarkadams4 Mat matTrans; 79896497c311SBarry Smith 799072833a62Smarkadams4 PetscCall(MatTranspose(Gmat, MAT_INITIAL_MATRIX, &matTrans)); 79911fcb517eSBarry Smith PetscCall(MatAXPY(Gmat, 1.0, matTrans, Gmat->structurally_symmetric == PETSC_BOOL3_TRUE ? SAME_NONZERO_PATTERN : DIFFERENT_NONZERO_PATTERN)); 799272833a62Smarkadams4 PetscCall(MatDestroy(&matTrans)); 799372833a62Smarkadams4 } 799472833a62Smarkadams4 PetscCall(MatSetOption(Gmat, MAT_SYMMETRIC, PETSC_TRUE)); 79952d776b49SBarry Smith } else if (Amat != Gmat) PetscCall(MatPropagateSymmetryOptions(Amat, Gmat)); 799672833a62Smarkadams4 if (scale) { 799772833a62Smarkadams4 /* scale c for all diagonal values = 1 or -1 */ 799872833a62Smarkadams4 Vec diag; 79996497c311SBarry Smith 800072833a62Smarkadams4 PetscCall(MatCreateVecs(Gmat, &diag, NULL)); 800172833a62Smarkadams4 PetscCall(MatGetDiagonal(Gmat, diag)); 800272833a62Smarkadams4 PetscCall(VecReciprocal(diag)); 800372833a62Smarkadams4 PetscCall(VecSqrtAbs(diag)); 800472833a62Smarkadams4 PetscCall(MatDiagonalScale(Gmat, diag, diag)); 800572833a62Smarkadams4 PetscCall(VecDestroy(&diag)); 800672833a62Smarkadams4 } 800772833a62Smarkadams4 PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_graph_view")); 80082d776b49SBarry Smith if (filter >= 0) { 80092ce66baaSPierre Jolivet PetscCall(MatFilter(Gmat, filter, PETSC_TRUE, PETSC_TRUE)); 80102ce66baaSPierre Jolivet PetscCall(MatViewFromOptions(Gmat, NULL, "-mat_filter_graph_view")); 80112d776b49SBarry Smith } 801272833a62Smarkadams4 *a_Gmat = Gmat; 80133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 801472833a62Smarkadams4 } 801572833a62Smarkadams4 801603db1824SAlex Lindsay PETSC_INTERN PetscErrorCode MatGetCurrentMemType_MPIAIJ(Mat A, PetscMemType *memtype) 801703db1824SAlex Lindsay { 801803db1824SAlex Lindsay Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)A->data; 801903db1824SAlex Lindsay PetscMemType mD = PETSC_MEMTYPE_HOST, mO = PETSC_MEMTYPE_HOST; 802003db1824SAlex Lindsay 802103db1824SAlex Lindsay PetscFunctionBegin; 802203db1824SAlex Lindsay if (mpiaij->A) PetscCall(MatGetCurrentMemType(mpiaij->A, &mD)); 802303db1824SAlex Lindsay if (mpiaij->B) PetscCall(MatGetCurrentMemType(mpiaij->B, &mO)); 802403db1824SAlex Lindsay *memtype = (mD == mO) ? mD : PETSC_MEMTYPE_HOST; 802503db1824SAlex Lindsay PetscFunctionReturn(PETSC_SUCCESS); 802603db1824SAlex Lindsay } 802703db1824SAlex Lindsay 802872833a62Smarkadams4 /* 802998921bdaSJacob Faibussowitsch Special version for direct calls from Fortran 803098921bdaSJacob Faibussowitsch */ 803198921bdaSJacob Faibussowitsch 803298921bdaSJacob Faibussowitsch /* Change these macros so can be used in void function */ 80339566063dSJacob Faibussowitsch /* Identical to PetscCallVoid, except it assigns to *_ierr */ 80349566063dSJacob Faibussowitsch #undef PetscCall 80359371c9d4SSatish Balay #define PetscCall(...) \ 80369371c9d4SSatish Balay do { \ 80375f80ce2aSJacob Faibussowitsch PetscErrorCode ierr_msv_mpiaij = __VA_ARGS__; \ 803898921bdaSJacob Faibussowitsch if (PetscUnlikely(ierr_msv_mpiaij)) { \ 803998921bdaSJacob Faibussowitsch *_ierr = PetscError(PETSC_COMM_SELF, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr_msv_mpiaij, PETSC_ERROR_REPEAT, " "); \ 804098921bdaSJacob Faibussowitsch return; \ 804198921bdaSJacob Faibussowitsch } \ 804298921bdaSJacob Faibussowitsch } while (0) 804398921bdaSJacob Faibussowitsch 804498921bdaSJacob Faibussowitsch #undef SETERRQ 80459371c9d4SSatish Balay #define SETERRQ(comm, ierr, ...) \ 80469371c9d4SSatish Balay do { \ 804798921bdaSJacob Faibussowitsch *_ierr = PetscError(comm, __LINE__, PETSC_FUNCTION_NAME, __FILE__, ierr, PETSC_ERROR_INITIAL, __VA_ARGS__); \ 804898921bdaSJacob Faibussowitsch return; \ 804998921bdaSJacob Faibussowitsch } while (0) 805098921bdaSJacob Faibussowitsch 805198921bdaSJacob Faibussowitsch #if defined(PETSC_HAVE_FORTRAN_CAPS) 805298921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ MATSETVALUESMPIAIJ 805398921bdaSJacob Faibussowitsch #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 805498921bdaSJacob Faibussowitsch #define matsetvaluesmpiaij_ matsetvaluesmpiaij 805598921bdaSJacob Faibussowitsch #else 805698921bdaSJacob Faibussowitsch #endif 8057d71ae5a4SJacob Faibussowitsch PETSC_EXTERN void matsetvaluesmpiaij_(Mat *mmat, PetscInt *mm, const PetscInt im[], PetscInt *mn, const PetscInt in[], const PetscScalar v[], InsertMode *maddv, PetscErrorCode *_ierr) 8058d71ae5a4SJacob Faibussowitsch { 805998921bdaSJacob Faibussowitsch Mat mat = *mmat; 806098921bdaSJacob Faibussowitsch PetscInt m = *mm, n = *mn; 806198921bdaSJacob Faibussowitsch InsertMode addv = *maddv; 806298921bdaSJacob Faibussowitsch Mat_MPIAIJ *aij = (Mat_MPIAIJ *)mat->data; 806398921bdaSJacob Faibussowitsch PetscScalar value; 806498921bdaSJacob Faibussowitsch 806598921bdaSJacob Faibussowitsch MatCheckPreallocated(mat, 1); 806698921bdaSJacob Faibussowitsch if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 80675f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 806898921bdaSJacob Faibussowitsch { 806998921bdaSJacob Faibussowitsch PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend; 807098921bdaSJacob Faibussowitsch PetscInt cstart = mat->cmap->rstart, cend = mat->cmap->rend, row, col; 807198921bdaSJacob Faibussowitsch PetscBool roworiented = aij->roworiented; 807298921bdaSJacob Faibussowitsch 807398921bdaSJacob Faibussowitsch /* Some Variables required in the macro */ 807498921bdaSJacob Faibussowitsch Mat A = aij->A; 807598921bdaSJacob Faibussowitsch Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 807698921bdaSJacob Faibussowitsch PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 807798921bdaSJacob Faibussowitsch MatScalar *aa; 8078f4f49eeaSPierre Jolivet PetscBool ignorezeroentries = ((a->ignorezeroentries && (addv == ADD_VALUES)) ? PETSC_TRUE : PETSC_FALSE); 807998921bdaSJacob Faibussowitsch Mat B = aij->B; 808098921bdaSJacob Faibussowitsch Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 808198921bdaSJacob Faibussowitsch PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j, bm = aij->B->rmap->n, am = aij->A->rmap->n; 808298921bdaSJacob Faibussowitsch MatScalar *ba; 808398921bdaSJacob Faibussowitsch /* This variable below is only for the PETSC_HAVE_VIENNACL or PETSC_HAVE_CUDA cases, but we define it in all cases because we 808498921bdaSJacob Faibussowitsch * cannot use "#if defined" inside a macro. */ 808598921bdaSJacob Faibussowitsch PETSC_UNUSED PetscBool inserted = PETSC_FALSE; 808698921bdaSJacob Faibussowitsch 808798921bdaSJacob Faibussowitsch PetscInt *rp1, *rp2, ii, nrow1, nrow2, _i, rmax1, rmax2, N, low1, high1, low2, high2, t, lastcol1, lastcol2; 808898921bdaSJacob Faibussowitsch PetscInt nonew = a->nonew; 808998921bdaSJacob Faibussowitsch MatScalar *ap1, *ap2; 809098921bdaSJacob Faibussowitsch 809198921bdaSJacob Faibussowitsch PetscFunctionBegin; 80929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(A, &aa)); 80939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArray(B, &ba)); 809498921bdaSJacob Faibussowitsch for (i = 0; i < m; i++) { 809598921bdaSJacob Faibussowitsch if (im[i] < 0) continue; 80966bdcaf15SBarry Smith PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 809798921bdaSJacob Faibussowitsch if (im[i] >= rstart && im[i] < rend) { 809898921bdaSJacob Faibussowitsch row = im[i] - rstart; 809998921bdaSJacob Faibussowitsch lastcol1 = -1; 810098921bdaSJacob Faibussowitsch rp1 = aj + ai[row]; 810198921bdaSJacob Faibussowitsch ap1 = aa + ai[row]; 810298921bdaSJacob Faibussowitsch rmax1 = aimax[row]; 810398921bdaSJacob Faibussowitsch nrow1 = ailen[row]; 810498921bdaSJacob Faibussowitsch low1 = 0; 810598921bdaSJacob Faibussowitsch high1 = nrow1; 810698921bdaSJacob Faibussowitsch lastcol2 = -1; 810798921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 810898921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 810998921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 811098921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 811198921bdaSJacob Faibussowitsch low2 = 0; 811298921bdaSJacob Faibussowitsch high2 = nrow2; 811398921bdaSJacob Faibussowitsch 811498921bdaSJacob Faibussowitsch for (j = 0; j < n; j++) { 811598921bdaSJacob Faibussowitsch if (roworiented) value = v[i * n + j]; 811698921bdaSJacob Faibussowitsch else value = v[i + j * m]; 811798921bdaSJacob Faibussowitsch if (ignorezeroentries && value == 0.0 && (addv == ADD_VALUES) && im[i] != in[j]) continue; 811898921bdaSJacob Faibussowitsch if (in[j] >= cstart && in[j] < cend) { 811998921bdaSJacob Faibussowitsch col = in[j] - cstart; 812098921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_A_Private(row, col, value, addv, im[i], in[j]); 812198921bdaSJacob Faibussowitsch } else if (in[j] < 0) continue; 812298921bdaSJacob Faibussowitsch else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) { 812363a3b9bcSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 812498921bdaSJacob Faibussowitsch } else { 812598921bdaSJacob Faibussowitsch if (mat->was_assembled) { 812648a46eb9SPierre Jolivet if (!aij->colmap) PetscCall(MatCreateColmap_MPIAIJ_Private(mat)); 812798921bdaSJacob Faibussowitsch #if defined(PETSC_USE_CTABLE) 8128eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(aij->colmap, in[j] + 1, 0, &col)); 812998921bdaSJacob Faibussowitsch col--; 813098921bdaSJacob Faibussowitsch #else 813198921bdaSJacob Faibussowitsch col = aij->colmap[in[j]] - 1; 813298921bdaSJacob Faibussowitsch #endif 8133f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqAIJ *)aij->A->data)->nonew) { 8134eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(mat, PETSC_FALSE)); 813598921bdaSJacob Faibussowitsch col = in[j]; 813698921bdaSJacob Faibussowitsch /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */ 813798921bdaSJacob Faibussowitsch B = aij->B; 813898921bdaSJacob Faibussowitsch b = (Mat_SeqAIJ *)B->data; 81399371c9d4SSatish Balay bimax = b->imax; 81409371c9d4SSatish Balay bi = b->i; 81419371c9d4SSatish Balay bilen = b->ilen; 81429371c9d4SSatish Balay bj = b->j; 814398921bdaSJacob Faibussowitsch rp2 = bj + bi[row]; 814498921bdaSJacob Faibussowitsch ap2 = ba + bi[row]; 814598921bdaSJacob Faibussowitsch rmax2 = bimax[row]; 814698921bdaSJacob Faibussowitsch nrow2 = bilen[row]; 814798921bdaSJacob Faibussowitsch low2 = 0; 814898921bdaSJacob Faibussowitsch high2 = nrow2; 814998921bdaSJacob Faibussowitsch bm = aij->B->rmap->n; 815098921bdaSJacob Faibussowitsch ba = b->a; 815198921bdaSJacob Faibussowitsch inserted = PETSC_FALSE; 815298921bdaSJacob Faibussowitsch } 815398921bdaSJacob Faibussowitsch } else col = in[j]; 815498921bdaSJacob Faibussowitsch MatSetValues_SeqAIJ_B_Private(row, col, value, addv, im[i], in[j]); 815598921bdaSJacob Faibussowitsch } 815698921bdaSJacob Faibussowitsch } 815798921bdaSJacob Faibussowitsch } else if (!aij->donotstash) { 815898921bdaSJacob Faibussowitsch if (roworiented) { 81599566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 816098921bdaSJacob Faibussowitsch } else { 81619566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, (PetscBool)(ignorezeroentries && (addv == ADD_VALUES)))); 816298921bdaSJacob Faibussowitsch } 816398921bdaSJacob Faibussowitsch } 816498921bdaSJacob Faibussowitsch } 81659566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(A, &aa)); 81669566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArray(B, &ba)); 816798921bdaSJacob Faibussowitsch } 816898921bdaSJacob Faibussowitsch PetscFunctionReturnVoid(); 816998921bdaSJacob Faibussowitsch } 817072833a62Smarkadams4 817198921bdaSJacob Faibussowitsch /* Undefining these here since they were redefined from their original definition above! No 817298921bdaSJacob Faibussowitsch * other PETSc functions should be defined past this point, as it is impossible to recover the 817398921bdaSJacob Faibussowitsch * original definitions */ 81749566063dSJacob Faibussowitsch #undef PetscCall 817598921bdaSJacob Faibussowitsch #undef SETERRQ 8176