xref: /petsc/src/mat/impls/aij/mpi/mpiaij.c (revision 6a6a5d1dfdd5fcb6e31127fc1e7bbfb8f4c48c0a)
1b57c8cebSBarry Smith 
2a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER
3*6a6a5d1dSBarry Smith static char vcid[] = "$Id: mpiaij.c,v 1.230 1998/01/06 20:10:25 bsmith Exp bsmith $";
4cb512458SBarry Smith #endif
58a729477SBarry Smith 
63369ce9aSBarry Smith #include "pinclude/pviewer.h"
770f55243SBarry Smith #include "src/mat/impls/aij/mpi/mpiaij.h"
8f5eb4b81SSatish Balay #include "src/vec/vecimpl.h"
9d9942c19SSatish Balay #include "src/inline/spops.h"
108a729477SBarry Smith 
119e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column
129e25ed09SBarry Smith number to the local number in the off-diagonal part of the local
139e25ed09SBarry Smith storage of the matrix.  This is done in a non scable way since the
149e25ed09SBarry Smith length of colmap equals the global matrix length.
159e25ed09SBarry Smith */
165615d1e5SSatish Balay #undef __FUNC__
17d4bb536fSBarry Smith #define __FUNC__ "CreateColmap_MPIAIJ_Private"
180a198c4cSBarry Smith int CreateColmap_MPIAIJ_Private(Mat mat)
199e25ed09SBarry Smith {
2044a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
21ec8511deSBarry Smith   Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data;
22905e6a2fSBarry Smith   int        n = B->n,i;
23dbb450caSBarry Smith 
243a40ed3dSBarry Smith   PetscFunctionBegin;
25758f045eSSatish Balay   aij->colmap = (int *) PetscMalloc((aij->N+1)*sizeof(int));CHKPTRQ(aij->colmap);
26464493b3SBarry Smith   PLogObjectMemory(mat,aij->N*sizeof(int));
27cddf8d76SBarry Smith   PetscMemzero(aij->colmap,aij->N*sizeof(int));
28905e6a2fSBarry Smith   for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i+1;
293a40ed3dSBarry Smith   PetscFunctionReturn(0);
309e25ed09SBarry Smith }
319e25ed09SBarry Smith 
322493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat);
332493cbb0SBarry Smith 
340520107fSSatish Balay #define CHUNKSIZE   15
3530770e4dSSatish Balay #define MatSetValues_SeqAIJ_A_Private(row,col,value,addv) \
360520107fSSatish Balay { \
370520107fSSatish Balay  \
380520107fSSatish Balay     rp   = aj + ai[row] + shift; ap = aa + ai[row] + shift; \
3930770e4dSSatish Balay     rmax = aimax[row]; nrow = ailen[row];  \
40f5e9677aSSatish Balay     col1 = col - shift; \
41f5e9677aSSatish Balay      \
42ba4e3ef2SSatish Balay     low = 0; high = nrow; \
43ba4e3ef2SSatish Balay     while (high-low > 5) { \
44ba4e3ef2SSatish Balay       t = (low+high)/2; \
45ba4e3ef2SSatish Balay       if (rp[t] > col) high = t; \
46ba4e3ef2SSatish Balay       else             low  = t; \
47ba4e3ef2SSatish Balay     } \
480520107fSSatish Balay       for ( _i=0; _i<nrow; _i++ ) { \
49f5e9677aSSatish Balay         if (rp[_i] > col1) break; \
50f5e9677aSSatish Balay         if (rp[_i] == col1) { \
510520107fSSatish Balay           if (addv == ADD_VALUES) ap[_i] += value;   \
520520107fSSatish Balay           else                  ap[_i] = value; \
5330770e4dSSatish Balay           goto a_noinsert; \
540520107fSSatish Balay         } \
550520107fSSatish Balay       }  \
5689280ab3SLois Curfman McInnes       if (nonew == 1) goto a_noinsert; \
57a8c6a408SBarry Smith       else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \
580520107fSSatish Balay       if (nrow >= rmax) { \
590520107fSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
600520107fSSatish Balay         int    new_nz = ai[a->m] + CHUNKSIZE,len,*new_i,*new_j; \
610520107fSSatish Balay         Scalar *new_a; \
620520107fSSatish Balay  \
63a8c6a408SBarry Smith         if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \
6489280ab3SLois Curfman McInnes  \
650520107fSSatish Balay         /* malloc new storage space */ \
660520107fSSatish Balay         len     = new_nz*(sizeof(int)+sizeof(Scalar))+(a->m+1)*sizeof(int); \
670520107fSSatish Balay         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \
680520107fSSatish Balay         new_j   = (int *) (new_a + new_nz); \
690520107fSSatish Balay         new_i   = new_j + new_nz; \
700520107fSSatish Balay  \
710520107fSSatish Balay         /* copy over old data into new slots */ \
720520107fSSatish Balay         for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = ai[ii];} \
730520107fSSatish Balay         for ( ii=row+1; ii<a->m+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
740520107fSSatish Balay         PetscMemcpy(new_j,aj,(ai[row]+nrow+shift)*sizeof(int)); \
750520107fSSatish Balay         len = (new_nz - CHUNKSIZE - ai[row] - nrow - shift); \
760520107fSSatish Balay         PetscMemcpy(new_j+ai[row]+shift+nrow+CHUNKSIZE,aj+ai[row]+shift+nrow, \
770520107fSSatish Balay                                                            len*sizeof(int)); \
780520107fSSatish Balay         PetscMemcpy(new_a,aa,(ai[row]+nrow+shift)*sizeof(Scalar)); \
790520107fSSatish Balay         PetscMemcpy(new_a+ai[row]+shift+nrow+CHUNKSIZE,aa+ai[row]+shift+nrow, \
800520107fSSatish Balay                                                            len*sizeof(Scalar));  \
810520107fSSatish Balay         /* free up old matrix storage */ \
82f5e9677aSSatish Balay  \
830520107fSSatish Balay         PetscFree(a->a);  \
840520107fSSatish Balay         if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} \
850520107fSSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
860520107fSSatish Balay         a->singlemalloc = 1; \
870520107fSSatish Balay  \
880520107fSSatish Balay         rp   = aj + ai[row] + shift; ap = aa + ai[row] + shift; \
8930770e4dSSatish Balay         rmax = aimax[row] = aimax[row] + CHUNKSIZE; \
900520107fSSatish Balay         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + sizeof(Scalar))); \
910520107fSSatish Balay         a->maxnz += CHUNKSIZE; \
920520107fSSatish Balay         a->reallocs++; \
930520107fSSatish Balay       } \
940520107fSSatish Balay       N = nrow++ - 1; a->nz++; \
950520107fSSatish Balay       /* shift up all the later entries in this row */ \
960520107fSSatish Balay       for ( ii=N; ii>=_i; ii-- ) { \
970520107fSSatish Balay         rp[ii+1] = rp[ii]; \
980520107fSSatish Balay         ap[ii+1] = ap[ii]; \
990520107fSSatish Balay       } \
100f5e9677aSSatish Balay       rp[_i] = col1;  \
1010520107fSSatish Balay       ap[_i] = value;  \
10230770e4dSSatish Balay       a_noinsert: ; \
1030520107fSSatish Balay       ailen[row] = nrow; \
1040520107fSSatish Balay }
1050a198c4cSBarry Smith 
10630770e4dSSatish Balay #define MatSetValues_SeqAIJ_B_Private(row,col,value,addv) \
10730770e4dSSatish Balay { \
10830770e4dSSatish Balay  \
10930770e4dSSatish Balay     rp   = bj + bi[row] + shift; ap = ba + bi[row] + shift; \
11030770e4dSSatish Balay     rmax = bimax[row]; nrow = bilen[row];  \
11130770e4dSSatish Balay     col1 = col - shift; \
11230770e4dSSatish Balay      \
113ba4e3ef2SSatish Balay     low = 0; high = nrow; \
114ba4e3ef2SSatish Balay     while (high-low > 5) { \
115ba4e3ef2SSatish Balay       t = (low+high)/2; \
116ba4e3ef2SSatish Balay       if (rp[t] > col) high = t; \
117ba4e3ef2SSatish Balay       else             low  = t; \
118ba4e3ef2SSatish Balay     } \
11930770e4dSSatish Balay        for ( _i=0; _i<nrow; _i++ ) { \
12030770e4dSSatish Balay         if (rp[_i] > col1) break; \
12130770e4dSSatish Balay         if (rp[_i] == col1) { \
12230770e4dSSatish Balay           if (addv == ADD_VALUES) ap[_i] += value;   \
12330770e4dSSatish Balay           else                  ap[_i] = value; \
12430770e4dSSatish Balay           goto b_noinsert; \
12530770e4dSSatish Balay         } \
12630770e4dSSatish Balay       }  \
12789280ab3SLois Curfman McInnes       if (nonew == 1) goto b_noinsert; \
128a8c6a408SBarry Smith       else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \
12930770e4dSSatish Balay       if (nrow >= rmax) { \
13030770e4dSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
13174c639caSSatish Balay         int    new_nz = bi[b->m] + CHUNKSIZE,len,*new_i,*new_j; \
13230770e4dSSatish Balay         Scalar *new_a; \
13330770e4dSSatish Balay  \
134a8c6a408SBarry Smith         if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \
13589280ab3SLois Curfman McInnes  \
13630770e4dSSatish Balay         /* malloc new storage space */ \
13774c639caSSatish Balay         len     = new_nz*(sizeof(int)+sizeof(Scalar))+(b->m+1)*sizeof(int); \
13830770e4dSSatish Balay         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \
13930770e4dSSatish Balay         new_j   = (int *) (new_a + new_nz); \
14030770e4dSSatish Balay         new_i   = new_j + new_nz; \
14130770e4dSSatish Balay  \
14230770e4dSSatish Balay         /* copy over old data into new slots */ \
14330770e4dSSatish Balay         for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = bi[ii];} \
14474c639caSSatish Balay         for ( ii=row+1; ii<b->m+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
14530770e4dSSatish Balay         PetscMemcpy(new_j,bj,(bi[row]+nrow+shift)*sizeof(int)); \
14630770e4dSSatish Balay         len = (new_nz - CHUNKSIZE - bi[row] - nrow - shift); \
14730770e4dSSatish Balay         PetscMemcpy(new_j+bi[row]+shift+nrow+CHUNKSIZE,bj+bi[row]+shift+nrow, \
14830770e4dSSatish Balay                                                            len*sizeof(int)); \
14930770e4dSSatish Balay         PetscMemcpy(new_a,ba,(bi[row]+nrow+shift)*sizeof(Scalar)); \
15030770e4dSSatish Balay         PetscMemcpy(new_a+bi[row]+shift+nrow+CHUNKSIZE,ba+bi[row]+shift+nrow, \
15130770e4dSSatish Balay                                                            len*sizeof(Scalar));  \
15230770e4dSSatish Balay         /* free up old matrix storage */ \
15330770e4dSSatish Balay  \
15474c639caSSatish Balay         PetscFree(b->a);  \
15574c639caSSatish Balay         if (!b->singlemalloc) {PetscFree(b->i);PetscFree(b->j);} \
15674c639caSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
15774c639caSSatish Balay         b->singlemalloc = 1; \
15830770e4dSSatish Balay  \
15930770e4dSSatish Balay         rp   = bj + bi[row] + shift; ap = ba + bi[row] + shift; \
16030770e4dSSatish Balay         rmax = bimax[row] = bimax[row] + CHUNKSIZE; \
16174c639caSSatish Balay         PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + sizeof(Scalar))); \
16274c639caSSatish Balay         b->maxnz += CHUNKSIZE; \
16374c639caSSatish Balay         b->reallocs++; \
16430770e4dSSatish Balay       } \
16574c639caSSatish Balay       N = nrow++ - 1; b->nz++; \
16630770e4dSSatish Balay       /* shift up all the later entries in this row */ \
16730770e4dSSatish Balay       for ( ii=N; ii>=_i; ii-- ) { \
16830770e4dSSatish Balay         rp[ii+1] = rp[ii]; \
16930770e4dSSatish Balay         ap[ii+1] = ap[ii]; \
17030770e4dSSatish Balay       } \
17130770e4dSSatish Balay       rp[_i] = col1;  \
17230770e4dSSatish Balay       ap[_i] = value;  \
17330770e4dSSatish Balay       b_noinsert: ; \
17430770e4dSSatish Balay       bilen[row] = nrow; \
17530770e4dSSatish Balay }
17630770e4dSSatish Balay 
1770520107fSSatish Balay extern int MatSetValues_SeqAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode);
1785615d1e5SSatish Balay #undef __FUNC__
1795615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIAIJ"
1808f6be9afSLois Curfman McInnes int MatSetValues_MPIAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
1818a729477SBarry Smith {
18244a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
1834b0e389bSBarry Smith   Scalar     value;
1841eb62cbbSBarry Smith   int        ierr,i,j, rstart = aij->rstart, rend = aij->rend;
1851eb62cbbSBarry Smith   int        cstart = aij->cstart, cend = aij->cend,row,col;
186905e6a2fSBarry Smith   int        roworiented = aij->roworiented;
1878a729477SBarry Smith 
1880520107fSSatish Balay   /* Some Variables required in the macro */
1894ee7247eSSatish Balay   Mat        A = aij->A;
1904ee7247eSSatish Balay   Mat_SeqAIJ *a = (Mat_SeqAIJ *) A->data;
19130770e4dSSatish Balay   int        *aimax = a->imax, *ai = a->i, *ailen = a->ilen,*aj = a->j;
19230770e4dSSatish Balay   Scalar     *aa = a->a;
19330770e4dSSatish Balay 
19430770e4dSSatish Balay   Mat        B = aij->B;
19530770e4dSSatish Balay   Mat_SeqAIJ *b = (Mat_SeqAIJ *) B->data;
19630770e4dSSatish Balay   int        *bimax = b->imax, *bi = b->i, *bilen = b->ilen,*bj = b->j;
19730770e4dSSatish Balay   Scalar     *ba = b->a;
19830770e4dSSatish Balay 
199ba4e3ef2SSatish Balay   int        *rp,ii,nrow,_i,rmax, N, col1,low,high,t;
20030770e4dSSatish Balay   int        nonew = a->nonew,shift = a->indexshift;
20130770e4dSSatish Balay   Scalar     *ap;
2024ee7247eSSatish Balay 
2033a40ed3dSBarry Smith   PetscFunctionBegin;
2048a729477SBarry Smith   for ( i=0; i<m; i++ ) {
2053a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
206a8c6a408SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
207a8c6a408SBarry Smith     if (im[i] >= aij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
2080a198c4cSBarry Smith #endif
2094b0e389bSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
2104b0e389bSBarry Smith       row = im[i] - rstart;
2111eb62cbbSBarry Smith       for ( j=0; j<n; j++ ) {
2124b0e389bSBarry Smith         if (in[j] >= cstart && in[j] < cend){
2134b0e389bSBarry Smith           col = in[j] - cstart;
2144b0e389bSBarry Smith           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
21530770e4dSSatish Balay           MatSetValues_SeqAIJ_A_Private(row,col,value,addv);
2160520107fSSatish Balay           /* ierr = MatSetValues_SeqAIJ(aij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
2171eb62cbbSBarry Smith         }
2183a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
219a8c6a408SBarry Smith         else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");}
220a8c6a408SBarry Smith         else if (in[j] >= aij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");}
2210a198c4cSBarry Smith #endif
2221eb62cbbSBarry Smith         else {
223227d817aSBarry Smith           if (mat->was_assembled) {
224905e6a2fSBarry Smith             if (!aij->colmap) {
225905e6a2fSBarry Smith               ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr);
226905e6a2fSBarry Smith             }
227905e6a2fSBarry Smith             col = aij->colmap[in[j]] - 1;
228ec8511deSBarry Smith             if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
2292493cbb0SBarry Smith               ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
2304b0e389bSBarry Smith               col =  in[j];
2319bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqAIJ_B_Private() */
232f9508a3cSSatish Balay               B = aij->B;
233f9508a3cSSatish Balay               b = (Mat_SeqAIJ *) B->data;
234f9508a3cSSatish Balay               bimax = b->imax; bi = b->i; bilen = b->ilen; bj = b->j;
235f9508a3cSSatish Balay               ba = b->a;
236d6dfbf8fSBarry Smith             }
2379e25ed09SBarry Smith           }
2384b0e389bSBarry Smith           else col = in[j];
2394b0e389bSBarry Smith           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
24030770e4dSSatish Balay           MatSetValues_SeqAIJ_B_Private(row,col,value,addv);
24130770e4dSSatish Balay           /* ierr = MatSetValues_SeqAIJ(aij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
2421eb62cbbSBarry Smith         }
2431eb62cbbSBarry Smith       }
2441eb62cbbSBarry Smith     }
2451eb62cbbSBarry Smith     else {
24690f02eecSBarry Smith       if (roworiented && !aij->donotstash) {
2474b0e389bSBarry Smith         ierr = StashValues_Private(&aij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr);
2484b0e389bSBarry Smith       }
2494b0e389bSBarry Smith       else {
25090f02eecSBarry Smith         if (!aij->donotstash) {
2514b0e389bSBarry Smith           row = im[i];
2524b0e389bSBarry Smith           for ( j=0; j<n; j++ ) {
2534b0e389bSBarry Smith             ierr = StashValues_Private(&aij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr);
2544b0e389bSBarry Smith           }
2554b0e389bSBarry Smith         }
2561eb62cbbSBarry Smith       }
2578a729477SBarry Smith     }
25890f02eecSBarry Smith   }
2593a40ed3dSBarry Smith   PetscFunctionReturn(0);
2608a729477SBarry Smith }
2618a729477SBarry Smith 
2625615d1e5SSatish Balay #undef __FUNC__
2635615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIAIJ"
2648f6be9afSLois Curfman McInnes int MatGetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v)
265b49de8d1SLois Curfman McInnes {
266b49de8d1SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
267b49de8d1SLois Curfman McInnes   int        ierr,i,j, rstart = aij->rstart, rend = aij->rend;
268b49de8d1SLois Curfman McInnes   int        cstart = aij->cstart, cend = aij->cend,row,col;
269b49de8d1SLois Curfman McInnes 
2703a40ed3dSBarry Smith   PetscFunctionBegin;
271b49de8d1SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
272a8c6a408SBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
273a8c6a408SBarry Smith     if (idxm[i] >= aij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
274b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
275b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
276b49de8d1SLois Curfman McInnes       for ( j=0; j<n; j++ ) {
277a8c6a408SBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");
278a8c6a408SBarry Smith         if (idxn[j] >= aij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");
279b49de8d1SLois Curfman McInnes         if (idxn[j] >= cstart && idxn[j] < cend){
280b49de8d1SLois Curfman McInnes           col = idxn[j] - cstart;
281b49de8d1SLois Curfman McInnes           ierr = MatGetValues(aij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr);
282b49de8d1SLois Curfman McInnes         }
283b49de8d1SLois Curfman McInnes         else {
284905e6a2fSBarry Smith           if (!aij->colmap) {
285905e6a2fSBarry Smith             ierr = CreateColmap_MPIAIJ_Private(mat);CHKERRQ(ierr);
286905e6a2fSBarry Smith           }
287905e6a2fSBarry Smith           col = aij->colmap[idxn[j]] - 1;
288e60e1c95SSatish Balay           if ((col < 0) || (aij->garray[col] != idxn[j])) *(v+i*n+j) = 0.0;
289d9d09a02SSatish Balay           else {
290b49de8d1SLois Curfman McInnes             ierr = MatGetValues(aij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr);
291b49de8d1SLois Curfman McInnes           }
292b49de8d1SLois Curfman McInnes         }
293b49de8d1SLois Curfman McInnes       }
294a8c6a408SBarry Smith     } else {
295a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported");
296b49de8d1SLois Curfman McInnes     }
297b49de8d1SLois Curfman McInnes   }
2983a40ed3dSBarry Smith   PetscFunctionReturn(0);
299b49de8d1SLois Curfman McInnes }
300b49de8d1SLois Curfman McInnes 
3015615d1e5SSatish Balay #undef __FUNC__
3025615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIAIJ"
3038f6be9afSLois Curfman McInnes int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode)
3048a729477SBarry Smith {
30544a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
306d6dfbf8fSBarry Smith   MPI_Comm    comm = mat->comm;
30717699dbbSLois Curfman McInnes   int         size = aij->size, *owners = aij->rowners;
30817699dbbSLois Curfman McInnes   int         rank = aij->rank,tag = mat->tag, *owner,*starts,count,ierr;
3091eb62cbbSBarry Smith   MPI_Request *send_waits,*recv_waits;
3106abc6512SBarry Smith   int         *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
3111eb62cbbSBarry Smith   InsertMode  addv;
3121eb62cbbSBarry Smith   Scalar      *rvalues,*svalues;
3131eb62cbbSBarry Smith 
3143a40ed3dSBarry Smith   PetscFunctionBegin;
3151eb62cbbSBarry Smith   /* make sure all processors are either in INSERTMODE or ADDMODE */
316ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr);
317dbb450caSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
318a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added");
3191eb62cbbSBarry Smith   }
32047794344SBarry Smith   mat->insertmode = addv; /* in case this processor had no cache */
3211eb62cbbSBarry Smith 
3221eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
3230452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
324cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
3250452661fSBarry Smith   owner = (int *) PetscMalloc( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
3261eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
3271eb62cbbSBarry Smith     idx = aij->stash.idx[i];
32817699dbbSLois Curfman McInnes     for ( j=0; j<size; j++ ) {
3291eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
3301eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
3318a729477SBarry Smith       }
3328a729477SBarry Smith     }
3338a729477SBarry Smith   }
33417699dbbSLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
3351eb62cbbSBarry Smith 
3361eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
3370452661fSBarry Smith   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
338ca161407SBarry Smith   ierr = MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
33917699dbbSLois Curfman McInnes   nreceives = work[rank];
340ca161407SBarry Smith   ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
34117699dbbSLois Curfman McInnes   nmax = work[rank];
3420452661fSBarry Smith   PetscFree(work);
3431eb62cbbSBarry Smith 
3441eb62cbbSBarry Smith   /* post receives:
3451eb62cbbSBarry Smith        1) each message will consist of ordered pairs
3461eb62cbbSBarry Smith      (global index,value) we store the global index as a double
347d6dfbf8fSBarry Smith      to simplify the message passing.
3481eb62cbbSBarry Smith        2) since we don't know how long each individual message is we
3491eb62cbbSBarry Smith      allocate the largest needed buffer for each receive. Potentially
3501eb62cbbSBarry Smith      this is a lot of wasted space.
3511eb62cbbSBarry Smith 
3521eb62cbbSBarry Smith 
3531eb62cbbSBarry Smith        This could be done better.
3541eb62cbbSBarry Smith   */
355ca161407SBarry Smith   rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues);
356ca161407SBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
3571eb62cbbSBarry Smith   for ( i=0; i<nreceives; i++ ) {
358ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,
359ca161407SBarry Smith               comm,recv_waits+i);CHKERRQ(ierr);
3601eb62cbbSBarry Smith   }
3611eb62cbbSBarry Smith 
3621eb62cbbSBarry Smith   /* do sends:
3631eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
3641eb62cbbSBarry Smith          the ith processor
3651eb62cbbSBarry Smith   */
3660452661fSBarry Smith   svalues    = (Scalar *) PetscMalloc(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues);
367ca161407SBarry Smith   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
3680452661fSBarry Smith   starts     = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts);
3691eb62cbbSBarry Smith   starts[0]  = 0;
37017699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3711eb62cbbSBarry Smith   for ( i=0; i<aij->stash.n; i++ ) {
3721eb62cbbSBarry Smith     svalues[3*starts[owner[i]]]       = (Scalar)  aij->stash.idx[i];
3731eb62cbbSBarry Smith     svalues[3*starts[owner[i]]+1]     = (Scalar)  aij->stash.idy[i];
3741eb62cbbSBarry Smith     svalues[3*(starts[owner[i]]++)+2] =  aij->stash.array[i];
3751eb62cbbSBarry Smith   }
3760452661fSBarry Smith   PetscFree(owner);
3771eb62cbbSBarry Smith   starts[0] = 0;
37817699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3791eb62cbbSBarry Smith   count = 0;
38017699dbbSLois Curfman McInnes   for ( i=0; i<size; i++ ) {
3811eb62cbbSBarry Smith     if (procs[i]) {
382ca161407SBarry Smith       ierr = MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
3831eb62cbbSBarry Smith     }
3841eb62cbbSBarry Smith   }
3850452661fSBarry Smith   PetscFree(starts); PetscFree(nprocs);
3861eb62cbbSBarry Smith 
3871eb62cbbSBarry Smith   /* Free cache space */
38855908cccSLois Curfman McInnes   PLogInfo(mat,"MatAssemblyBegin_MPIAIJ:Number of off-processor values %d\n",aij->stash.n);
38978b31e54SBarry Smith   ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr);
3901eb62cbbSBarry Smith 
3911eb62cbbSBarry Smith   aij->svalues    = svalues;    aij->rvalues    = rvalues;
3921eb62cbbSBarry Smith   aij->nsends     = nsends;     aij->nrecvs     = nreceives;
3931eb62cbbSBarry Smith   aij->send_waits = send_waits; aij->recv_waits = recv_waits;
3941eb62cbbSBarry Smith   aij->rmax       = nmax;
3951eb62cbbSBarry Smith 
3963a40ed3dSBarry Smith   PetscFunctionReturn(0);
3971eb62cbbSBarry Smith }
39844a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat);
3991eb62cbbSBarry Smith 
4005615d1e5SSatish Balay #undef __FUNC__
4015615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIAIJ"
4028f6be9afSLois Curfman McInnes int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode)
4031eb62cbbSBarry Smith {
40444a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
4051eb62cbbSBarry Smith   MPI_Status  *send_status,recv_status;
406416022c9SBarry Smith   int         imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr;
407905e6a2fSBarry Smith   int         row,col,other_disassembled;
4081eb62cbbSBarry Smith   Scalar      *values,val;
40947794344SBarry Smith   InsertMode  addv = mat->insertmode;
4101eb62cbbSBarry Smith 
4113a40ed3dSBarry Smith   PetscFunctionBegin;
4121eb62cbbSBarry Smith   /*  wait on receives */
4131eb62cbbSBarry Smith   while (count) {
414ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4151eb62cbbSBarry Smith     /* unpack receives into our local space */
416d6dfbf8fSBarry Smith     values = aij->rvalues + 3*imdex*aij->rmax;
417ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,&n);CHKERRQ(ierr);
4181eb62cbbSBarry Smith     n = n/3;
4191eb62cbbSBarry Smith     for ( i=0; i<n; i++ ) {
420227d817aSBarry Smith       row = (int) PetscReal(values[3*i]) - aij->rstart;
421227d817aSBarry Smith       col = (int) PetscReal(values[3*i+1]);
4221eb62cbbSBarry Smith       val = values[3*i+2];
4231eb62cbbSBarry Smith       if (col >= aij->cstart && col < aij->cend) {
4241eb62cbbSBarry Smith         col -= aij->cstart;
4256fd7127cSSatish Balay         ierr = MatSetValues(aij->A,1,&row,1,&col,&val,addv); CHKERRQ(ierr);
4263a40ed3dSBarry Smith       } else {
42755a1b374SBarry Smith         if (mat->was_assembled || mat->assembled) {
428905e6a2fSBarry Smith           if (!aij->colmap) {
429905e6a2fSBarry Smith             ierr = CreateColmap_MPIAIJ_Private(mat); CHKERRQ(ierr);
430905e6a2fSBarry Smith           }
431905e6a2fSBarry Smith           col = aij->colmap[col] - 1;
432ec8511deSBarry Smith           if (col < 0  && !((Mat_SeqAIJ*)(aij->A->data))->nonew) {
4332493cbb0SBarry Smith             ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
434227d817aSBarry Smith             col = (int) PetscReal(values[3*i+1]);
435d6dfbf8fSBarry Smith           }
4369e25ed09SBarry Smith         }
4376fd7127cSSatish Balay         ierr = MatSetValues(aij->B,1,&row,1,&col,&val,addv); CHKERRQ(ierr);
4381eb62cbbSBarry Smith       }
4391eb62cbbSBarry Smith     }
4401eb62cbbSBarry Smith     count--;
4411eb62cbbSBarry Smith   }
4420452661fSBarry Smith   PetscFree(aij->recv_waits); PetscFree(aij->rvalues);
4431eb62cbbSBarry Smith 
4441eb62cbbSBarry Smith   /* wait on sends */
4451eb62cbbSBarry Smith   if (aij->nsends) {
4460a198c4cSBarry Smith     send_status = (MPI_Status *) PetscMalloc(aij->nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
447ca161407SBarry Smith     ierr        = MPI_Waitall(aij->nsends,aij->send_waits,send_status);CHKERRQ(ierr);
4480452661fSBarry Smith     PetscFree(send_status);
4491eb62cbbSBarry Smith   }
4500452661fSBarry Smith   PetscFree(aij->send_waits); PetscFree(aij->svalues);
4511eb62cbbSBarry Smith 
45278b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr);
45378b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr);
4541eb62cbbSBarry Smith 
4552493cbb0SBarry Smith   /* determine if any processor has disassembled, if so we must
4562493cbb0SBarry Smith      also disassemble ourselfs, in order that we may reassemble. */
457ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
458227d817aSBarry Smith   if (mat->was_assembled && !other_disassembled) {
4592493cbb0SBarry Smith     ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr);
4602493cbb0SBarry Smith   }
4612493cbb0SBarry Smith 
4626d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
46378b31e54SBarry Smith     ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr);
4645e42470aSBarry Smith   }
46578b31e54SBarry Smith   ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr);
46678b31e54SBarry Smith   ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr);
4675e42470aSBarry Smith 
4687a0afa10SBarry Smith   if (aij->rowvalues) {PetscFree(aij->rowvalues); aij->rowvalues = 0;}
4693a40ed3dSBarry Smith   PetscFunctionReturn(0);
4708a729477SBarry Smith }
4718a729477SBarry Smith 
4725615d1e5SSatish Balay #undef __FUNC__
4735615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIAIJ"
4748f6be9afSLois Curfman McInnes int MatZeroEntries_MPIAIJ(Mat A)
4751eb62cbbSBarry Smith {
47644a69424SLois Curfman McInnes   Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data;
477dbd7a890SLois Curfman McInnes   int        ierr;
4783a40ed3dSBarry Smith 
4793a40ed3dSBarry Smith   PetscFunctionBegin;
48078b31e54SBarry Smith   ierr = MatZeroEntries(l->A); CHKERRQ(ierr);
48178b31e54SBarry Smith   ierr = MatZeroEntries(l->B); CHKERRQ(ierr);
4823a40ed3dSBarry Smith   PetscFunctionReturn(0);
4831eb62cbbSBarry Smith }
4841eb62cbbSBarry Smith 
4855615d1e5SSatish Balay #undef __FUNC__
4865615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIAIJ"
4878f6be9afSLois Curfman McInnes int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag)
4881eb62cbbSBarry Smith {
48944a69424SLois Curfman McInnes   Mat_MPIAIJ     *l = (Mat_MPIAIJ *) A->data;
49017699dbbSLois Curfman McInnes   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
4916a5c57faSSatish Balay   int            *procs,*nprocs,j,found,idx,nsends,*work,row;
49217699dbbSLois Curfman McInnes   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
4935392566eSBarry Smith   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
4946a5c57faSSatish Balay   int            *lens,imdex,*lrows,*values,rstart=l->rstart;
495d6dfbf8fSBarry Smith   MPI_Comm       comm = A->comm;
4961eb62cbbSBarry Smith   MPI_Request    *send_waits,*recv_waits;
4971eb62cbbSBarry Smith   MPI_Status     recv_status,*send_status;
4981eb62cbbSBarry Smith   IS             istmp;
4991eb62cbbSBarry Smith 
5003a40ed3dSBarry Smith   PetscFunctionBegin;
50177c4ece6SBarry Smith   ierr = ISGetSize(is,&N); CHKERRQ(ierr);
50278b31e54SBarry Smith   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
5031eb62cbbSBarry Smith 
5041eb62cbbSBarry Smith   /*  first count number of contributors to each processor */
5050452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
506cddf8d76SBarry Smith   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
5070452661fSBarry Smith   owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
5081eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
5091eb62cbbSBarry Smith     idx = rows[i];
5101eb62cbbSBarry Smith     found = 0;
51117699dbbSLois Curfman McInnes     for ( j=0; j<size; j++ ) {
5121eb62cbbSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
5131eb62cbbSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
5141eb62cbbSBarry Smith       }
5151eb62cbbSBarry Smith     }
516a8c6a408SBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range");
5171eb62cbbSBarry Smith   }
51817699dbbSLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
5191eb62cbbSBarry Smith 
5201eb62cbbSBarry Smith   /* inform other processors of number of messages and max length*/
5210452661fSBarry Smith   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
522ca161407SBarry Smith   ierr = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
52317699dbbSLois Curfman McInnes   nrecvs = work[rank];
524ca161407SBarry Smith   ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
52517699dbbSLois Curfman McInnes   nmax = work[rank];
5260452661fSBarry Smith   PetscFree(work);
5271eb62cbbSBarry Smith 
5281eb62cbbSBarry Smith   /* post receives:   */
5293a40ed3dSBarry Smith   rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues);
530ca161407SBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
5311eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
532ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
5331eb62cbbSBarry Smith   }
5341eb62cbbSBarry Smith 
5351eb62cbbSBarry Smith   /* do sends:
5361eb62cbbSBarry Smith       1) starts[i] gives the starting index in svalues for stuff going to
5371eb62cbbSBarry Smith          the ith processor
5381eb62cbbSBarry Smith   */
5390452661fSBarry Smith   svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
5403a40ed3dSBarry Smith   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
5410452661fSBarry Smith   starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts);
5421eb62cbbSBarry Smith   starts[0] = 0;
54317699dbbSLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
5441eb62cbbSBarry Smith   for ( i=0; i<N; i++ ) {
5451eb62cbbSBarry Smith     svalues[starts[owner[i]]++] = rows[i];
5461eb62cbbSBarry Smith   }
5471eb62cbbSBarry Smith   ISRestoreIndices(is,&rows);
5481eb62cbbSBarry Smith 
5491eb62cbbSBarry Smith   starts[0] = 0;
55017699dbbSLois Curfman McInnes   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
5511eb62cbbSBarry Smith   count = 0;
55217699dbbSLois Curfman McInnes   for ( i=0; i<size; i++ ) {
5531eb62cbbSBarry Smith     if (procs[i]) {
554ca161407SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
5551eb62cbbSBarry Smith     }
5561eb62cbbSBarry Smith   }
5570452661fSBarry Smith   PetscFree(starts);
5581eb62cbbSBarry Smith 
55917699dbbSLois Curfman McInnes   base = owners[rank];
5601eb62cbbSBarry Smith 
5611eb62cbbSBarry Smith   /*  wait on receives */
5620452661fSBarry Smith   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
5631eb62cbbSBarry Smith   source = lens + nrecvs;
5641eb62cbbSBarry Smith   count  = nrecvs; slen = 0;
5651eb62cbbSBarry Smith   while (count) {
566ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
5671eb62cbbSBarry Smith     /* unpack receives into our local space */
568ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
569d6dfbf8fSBarry Smith     source[imdex]  = recv_status.MPI_SOURCE;
570d6dfbf8fSBarry Smith     lens[imdex]  = n;
5711eb62cbbSBarry Smith     slen += n;
5721eb62cbbSBarry Smith     count--;
5731eb62cbbSBarry Smith   }
5740452661fSBarry Smith   PetscFree(recv_waits);
5751eb62cbbSBarry Smith 
5761eb62cbbSBarry Smith   /* move the data into the send scatter */
5770452661fSBarry Smith   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
5781eb62cbbSBarry Smith   count = 0;
5791eb62cbbSBarry Smith   for ( i=0; i<nrecvs; i++ ) {
5801eb62cbbSBarry Smith     values = rvalues + i*nmax;
5811eb62cbbSBarry Smith     for ( j=0; j<lens[i]; j++ ) {
5821eb62cbbSBarry Smith       lrows[count++] = values[j] - base;
5831eb62cbbSBarry Smith     }
5841eb62cbbSBarry Smith   }
5850452661fSBarry Smith   PetscFree(rvalues); PetscFree(lens);
5860452661fSBarry Smith   PetscFree(owner); PetscFree(nprocs);
5871eb62cbbSBarry Smith 
5881eb62cbbSBarry Smith   /* actually zap the local rows */
589029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
590464493b3SBarry Smith   PLogObjectParent(A,istmp);
5916a5c57faSSatish Balay 
5926a5c57faSSatish Balay   ierr = MatZeroRows(l->A,istmp,0); CHKERRQ(ierr);
59378b31e54SBarry Smith   ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr);
59478b31e54SBarry Smith   ierr = ISDestroy(istmp); CHKERRQ(ierr);
5951eb62cbbSBarry Smith 
5966a5c57faSSatish Balay   if (diag) {
5976a5c57faSSatish Balay     for ( i = 0; i < slen; i++ ) {
5986a5c57faSSatish Balay       row = lrows[i] + rstart;
5996a5c57faSSatish Balay       MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);
6006a5c57faSSatish Balay     }
6016a5c57faSSatish Balay     MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);
6026a5c57faSSatish Balay     MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);
6036a5c57faSSatish Balay   }
6046a5c57faSSatish Balay   PetscFree(lrows);
6051eb62cbbSBarry Smith  /* wait on sends */
6061eb62cbbSBarry Smith   if (nsends) {
607ca161407SBarry Smith     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
608ca161407SBarry Smith     ierr        = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
6090452661fSBarry Smith     PetscFree(send_status);
6101eb62cbbSBarry Smith   }
6110452661fSBarry Smith   PetscFree(send_waits); PetscFree(svalues);
6121eb62cbbSBarry Smith 
6133a40ed3dSBarry Smith   PetscFunctionReturn(0);
6141eb62cbbSBarry Smith }
6151eb62cbbSBarry Smith 
6165615d1e5SSatish Balay #undef __FUNC__
6175615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIAIJ"
6188f6be9afSLois Curfman McInnes int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy)
6191eb62cbbSBarry Smith {
620416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
621fbd6ef76SBarry Smith   int        ierr,nt;
622416022c9SBarry Smith 
6233a40ed3dSBarry Smith   PetscFunctionBegin;
624a2ce50c7SBarry Smith   ierr = VecGetLocalSize(xx,&nt);  CHKERRQ(ierr);
625fbd6ef76SBarry Smith   if (nt != a->n) {
626a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx");
627fbd6ef76SBarry Smith   }
62843a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx); CHKERRQ(ierr);
62938597bd4SSatish Balay   ierr = (*a->A->ops.mult)(a->A,xx,yy); CHKERRQ(ierr);
63043a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx); CHKERRQ(ierr);
63138597bd4SSatish Balay   ierr = (*a->B->ops.multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr);
6323a40ed3dSBarry Smith   PetscFunctionReturn(0);
6331eb62cbbSBarry Smith }
6341eb62cbbSBarry Smith 
6355615d1e5SSatish Balay #undef __FUNC__
6365615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIAIJ"
6378f6be9afSLois Curfman McInnes int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
638da3a660dSBarry Smith {
639416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
640da3a660dSBarry Smith   int        ierr;
6413a40ed3dSBarry Smith 
6423a40ed3dSBarry Smith   PetscFunctionBegin;
64343a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
64438597bd4SSatish Balay   ierr = (*a->A->ops.multadd)(a->A,xx,yy,zz); CHKERRQ(ierr);
64543a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
64638597bd4SSatish Balay   ierr = (*a->B->ops.multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr);
6473a40ed3dSBarry Smith   PetscFunctionReturn(0);
648da3a660dSBarry Smith }
649da3a660dSBarry Smith 
6505615d1e5SSatish Balay #undef __FUNC__
6515615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIAIJ"
6528f6be9afSLois Curfman McInnes int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy)
653da3a660dSBarry Smith {
654416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
655da3a660dSBarry Smith   int        ierr;
656da3a660dSBarry Smith 
6573a40ed3dSBarry Smith   PetscFunctionBegin;
658da3a660dSBarry Smith   /* do nondiagonal part */
65938597bd4SSatish Balay   ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr);
660da3a660dSBarry Smith   /* send it on its way */
661537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
662da3a660dSBarry Smith   /* do local part */
66338597bd4SSatish Balay   ierr = (*a->A->ops.multtrans)(a->A,xx,yy); CHKERRQ(ierr);
664da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
665da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
666da3a660dSBarry Smith   /* but is not perhaps always true. */
667537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
6683a40ed3dSBarry Smith   PetscFunctionReturn(0);
669da3a660dSBarry Smith }
670da3a660dSBarry Smith 
6715615d1e5SSatish Balay #undef __FUNC__
6725615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIAIJ"
6738f6be9afSLois Curfman McInnes int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz)
674da3a660dSBarry Smith {
675416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
676da3a660dSBarry Smith   int        ierr;
677da3a660dSBarry Smith 
6783a40ed3dSBarry Smith   PetscFunctionBegin;
679da3a660dSBarry Smith   /* do nondiagonal part */
68038597bd4SSatish Balay   ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr);
681da3a660dSBarry Smith   /* send it on its way */
682537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
683da3a660dSBarry Smith   /* do local part */
68438597bd4SSatish Balay   ierr = (*a->A->ops.multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr);
685da3a660dSBarry Smith   /* receive remote parts: note this assumes the values are not actually */
686da3a660dSBarry Smith   /* inserted in yy until the next line, which is true for my implementation*/
687da3a660dSBarry Smith   /* but is not perhaps always true. */
6880a198c4cSBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
6893a40ed3dSBarry Smith   PetscFunctionReturn(0);
690da3a660dSBarry Smith }
691da3a660dSBarry Smith 
6921eb62cbbSBarry Smith /*
6931eb62cbbSBarry Smith   This only works correctly for square matrices where the subblock A->A is the
6941eb62cbbSBarry Smith    diagonal block
6951eb62cbbSBarry Smith */
6965615d1e5SSatish Balay #undef __FUNC__
6975615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIAIJ"
6988f6be9afSLois Curfman McInnes int MatGetDiagonal_MPIAIJ(Mat A,Vec v)
6991eb62cbbSBarry Smith {
7003a40ed3dSBarry Smith   int        ierr;
701416022c9SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
7023a40ed3dSBarry Smith 
7033a40ed3dSBarry Smith   PetscFunctionBegin;
704a8c6a408SBarry Smith   if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block");
7055baf8537SBarry Smith   if (a->rstart != a->cstart || a->rend != a->cend) {
706a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"row partition must equal col partition");
7073a40ed3dSBarry Smith   }
7083a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
7093a40ed3dSBarry Smith   PetscFunctionReturn(0);
7101eb62cbbSBarry Smith }
7111eb62cbbSBarry Smith 
7125615d1e5SSatish Balay #undef __FUNC__
7135615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIAIJ"
7148f6be9afSLois Curfman McInnes int MatScale_MPIAIJ(Scalar *aa,Mat A)
715052efed2SBarry Smith {
716052efed2SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
717052efed2SBarry Smith   int        ierr;
7183a40ed3dSBarry Smith 
7193a40ed3dSBarry Smith   PetscFunctionBegin;
720052efed2SBarry Smith   ierr = MatScale(aa,a->A); CHKERRQ(ierr);
721052efed2SBarry Smith   ierr = MatScale(aa,a->B); CHKERRQ(ierr);
7223a40ed3dSBarry Smith   PetscFunctionReturn(0);
723052efed2SBarry Smith }
724052efed2SBarry Smith 
7255615d1e5SSatish Balay #undef __FUNC__
726d4bb536fSBarry Smith #define __FUNC__ "MatDestroy_MPIAIJ"
7278f6be9afSLois Curfman McInnes int MatDestroy_MPIAIJ(PetscObject obj)
7281eb62cbbSBarry Smith {
7291eb62cbbSBarry Smith   Mat        mat = (Mat) obj;
73044a69424SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
7311eb62cbbSBarry Smith   int        ierr;
73283e2fdc7SBarry Smith 
7333a40ed3dSBarry Smith   PetscFunctionBegin;
7343a40ed3dSBarry Smith #if defined(USE_PETSC_LOG)
7356e35fa57SLois Curfman McInnes   PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N);
736a5a9c739SBarry Smith #endif
73783e2fdc7SBarry Smith   ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr);
7380452661fSBarry Smith   PetscFree(aij->rowners);
73978b31e54SBarry Smith   ierr = MatDestroy(aij->A); CHKERRQ(ierr);
74078b31e54SBarry Smith   ierr = MatDestroy(aij->B); CHKERRQ(ierr);
7410452661fSBarry Smith   if (aij->colmap) PetscFree(aij->colmap);
7420452661fSBarry Smith   if (aij->garray) PetscFree(aij->garray);
7431eb62cbbSBarry Smith   if (aij->lvec)   VecDestroy(aij->lvec);
744a56f8943SBarry Smith   if (aij->Mvctx)  VecScatterDestroy(aij->Mvctx);
7457a0afa10SBarry Smith   if (aij->rowvalues) PetscFree(aij->rowvalues);
7460452661fSBarry Smith   PetscFree(aij);
747a5a9c739SBarry Smith   PLogObjectDestroy(mat);
7480452661fSBarry Smith   PetscHeaderDestroy(mat);
7493a40ed3dSBarry Smith   PetscFunctionReturn(0);
7501eb62cbbSBarry Smith }
751ee50ffe9SBarry Smith 
7525615d1e5SSatish Balay #undef __FUNC__
753d4bb536fSBarry Smith #define __FUNC__ "MatView_MPIAIJ_Binary"
7548f6be9afSLois Curfman McInnes extern int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer)
7551eb62cbbSBarry Smith {
756416022c9SBarry Smith   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
757416022c9SBarry Smith   int         ierr;
758416022c9SBarry Smith 
7593a40ed3dSBarry Smith   PetscFunctionBegin;
76017699dbbSLois Curfman McInnes   if (aij->size == 1) {
761416022c9SBarry Smith     ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
762416022c9SBarry Smith   }
763a8c6a408SBarry Smith   else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported");
7643a40ed3dSBarry Smith   PetscFunctionReturn(0);
765416022c9SBarry Smith }
766416022c9SBarry Smith 
7675615d1e5SSatish Balay #undef __FUNC__
768d4bb536fSBarry Smith #define __FUNC__ "MatView_MPIAIJ_ASCIIorDraworMatlab"
7698f6be9afSLois Curfman McInnes extern int MatView_MPIAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer)
770416022c9SBarry Smith {
77144a69424SLois Curfman McInnes   Mat_MPIAIJ  *aij = (Mat_MPIAIJ *) mat->data;
772dbb450caSBarry Smith   Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data;
773a56f8943SBarry Smith   int         ierr, format,shift = C->indexshift,rank;
774d636dbe3SBarry Smith   FILE        *fd;
77519bcc07fSBarry Smith   ViewerType  vtype;
776416022c9SBarry Smith 
7773a40ed3dSBarry Smith   PetscFunctionBegin;
77819bcc07fSBarry Smith   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
77919bcc07fSBarry Smith   if (vtype  == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) {
78090ace30eSBarry Smith     ierr = ViewerGetFormat(viewer,&format);
7810a198c4cSBarry Smith     if (format == VIEWER_FORMAT_ASCII_INFO_LONG) {
7824e220ebcSLois Curfman McInnes       MatInfo info;
7834e220ebcSLois Curfman McInnes       int     flg;
784a56f8943SBarry Smith       MPI_Comm_rank(mat->comm,&rank);
78590ace30eSBarry Smith       ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
7864e220ebcSLois Curfman McInnes       ierr = MatGetInfo(mat,MAT_LOCAL,&info);
78795e01e2fSLois Curfman McInnes       ierr = OptionsHasName(PETSC_NULL,"-mat_aij_no_inode",&flg); CHKERRQ(ierr);
78877c4ece6SBarry Smith       PetscSequentialPhaseBegin(mat->comm,1);
78995e01e2fSLois Curfman McInnes       if (flg) fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d, not using I-node routines\n",
7904e220ebcSLois Curfman McInnes          rank,aij->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory);
79195e01e2fSLois Curfman McInnes       else fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d, using I-node routines\n",
7924e220ebcSLois Curfman McInnes          rank,aij->m,(int)info.nz_used,(int)info.nz_allocated,(int)info.memory);
7934e220ebcSLois Curfman McInnes       ierr = MatGetInfo(aij->A,MAT_LOCAL,&info);
7944e220ebcSLois Curfman McInnes       fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used);
7954e220ebcSLois Curfman McInnes       ierr = MatGetInfo(aij->B,MAT_LOCAL,&info);
7964e220ebcSLois Curfman McInnes       fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used);
797a56f8943SBarry Smith       fflush(fd);
79877c4ece6SBarry Smith       PetscSequentialPhaseEnd(mat->comm,1);
799a40aa06bSLois Curfman McInnes       ierr = VecScatterView(aij->Mvctx,viewer); CHKERRQ(ierr);
8003a40ed3dSBarry Smith       PetscFunctionReturn(0);
8013a40ed3dSBarry Smith     } else if (format == VIEWER_FORMAT_ASCII_INFO) {
8023a40ed3dSBarry Smith       PetscFunctionReturn(0);
80308480c60SBarry Smith     }
804416022c9SBarry Smith   }
805416022c9SBarry Smith 
80619bcc07fSBarry Smith   if (vtype == DRAW_VIEWER) {
80719bcc07fSBarry Smith     Draw       draw;
80819bcc07fSBarry Smith     PetscTruth isnull;
80919bcc07fSBarry Smith     ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr);
8103a40ed3dSBarry Smith     ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
81119bcc07fSBarry Smith   }
81219bcc07fSBarry Smith 
81319bcc07fSBarry Smith   if (vtype == ASCII_FILE_VIEWER) {
81490ace30eSBarry Smith     ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
81577c4ece6SBarry Smith     PetscSequentialPhaseBegin(mat->comm,1);
816d13ab20cSBarry Smith     fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n",
81717699dbbSLois Curfman McInnes            aij->rank,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart,
8181eb62cbbSBarry Smith            aij->cend);
81978b31e54SBarry Smith     ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
82078b31e54SBarry Smith     ierr = MatView(aij->B,viewer); CHKERRQ(ierr);
821d13ab20cSBarry Smith     fflush(fd);
82277c4ece6SBarry Smith     PetscSequentialPhaseEnd(mat->comm,1);
8233a40ed3dSBarry Smith   } else {
824a56f8943SBarry Smith     int size = aij->size;
825a56f8943SBarry Smith     rank = aij->rank;
82617699dbbSLois Curfman McInnes     if (size == 1) {
82778b31e54SBarry Smith       ierr = MatView(aij->A,viewer); CHKERRQ(ierr);
8283a40ed3dSBarry Smith     } else {
82995373324SBarry Smith       /* assemble the entire matrix onto first processor. */
83095373324SBarry Smith       Mat         A;
831ec8511deSBarry Smith       Mat_SeqAIJ *Aloc;
8322eb8c8abSBarry Smith       int         M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct;
83395373324SBarry Smith       Scalar      *a;
8342ee70a88SLois Curfman McInnes 
83517699dbbSLois Curfman McInnes       if (!rank) {
83655843e3eSBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
8373a40ed3dSBarry Smith       } else {
83855843e3eSBarry Smith         ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
83995373324SBarry Smith       }
840464493b3SBarry Smith       PLogObjectParent(mat,A);
841416022c9SBarry Smith 
84295373324SBarry Smith       /* copy over the A part */
843ec8511deSBarry Smith       Aloc = (Mat_SeqAIJ*) aij->A->data;
8442ee70a88SLois Curfman McInnes       m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
84595373324SBarry Smith       row = aij->rstart;
846dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;}
84795373324SBarry Smith       for ( i=0; i<m; i++ ) {
848416022c9SBarry Smith         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr);
84995373324SBarry Smith         row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
85095373324SBarry Smith       }
8512ee70a88SLois Curfman McInnes       aj = Aloc->j;
852dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;}
85395373324SBarry Smith 
85495373324SBarry Smith       /* copy over the B part */
855ec8511deSBarry Smith       Aloc = (Mat_SeqAIJ*) aij->B->data;
8562ee70a88SLois Curfman McInnes       m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
85795373324SBarry Smith       row = aij->rstart;
8580452661fSBarry Smith       ct = cols = (int *) PetscMalloc( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols);
859dbb450caSBarry Smith       for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];}
86095373324SBarry Smith       for ( i=0; i<m; i++ ) {
861416022c9SBarry Smith         ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr);
86295373324SBarry Smith         row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
86395373324SBarry Smith       }
8640452661fSBarry Smith       PetscFree(ct);
8656d4a8577SBarry Smith       ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
8666d4a8577SBarry Smith       ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
86755843e3eSBarry Smith       /*
86855843e3eSBarry Smith          Everyone has to call to draw the matrix since the graphics waits are
86955843e3eSBarry Smith          synchronized across all processors that share the Draw object
87055843e3eSBarry Smith       */
87155843e3eSBarry Smith       if (!rank || vtype == DRAW_VIEWER) {
87278b31e54SBarry Smith         ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr);
87395373324SBarry Smith       }
87478b31e54SBarry Smith       ierr = MatDestroy(A); CHKERRQ(ierr);
87595373324SBarry Smith     }
87695373324SBarry Smith   }
8773a40ed3dSBarry Smith   PetscFunctionReturn(0);
8781eb62cbbSBarry Smith }
8791eb62cbbSBarry Smith 
8805615d1e5SSatish Balay #undef __FUNC__
881d4bb536fSBarry Smith #define __FUNC__ "MatView_MPIAIJ"
8828f6be9afSLois Curfman McInnes int MatView_MPIAIJ(PetscObject obj,Viewer viewer)
883416022c9SBarry Smith {
884416022c9SBarry Smith   Mat         mat = (Mat) obj;
885416022c9SBarry Smith   int         ierr;
88619bcc07fSBarry Smith   ViewerType  vtype;
887416022c9SBarry Smith 
8883a40ed3dSBarry Smith   PetscFunctionBegin;
88919bcc07fSBarry Smith   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
89019bcc07fSBarry Smith   if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER ||
89119bcc07fSBarry Smith       vtype == DRAW_VIEWER       || vtype == MATLAB_VIEWER) {
892d7e8b826SBarry Smith     ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr);
893416022c9SBarry Smith   }
89419bcc07fSBarry Smith   else if (vtype == BINARY_FILE_VIEWER) {
8953a40ed3dSBarry Smith     ierr = MatView_MPIAIJ_Binary(mat,viewer);CHKERRQ(ierr);
896416022c9SBarry Smith   }
8973a40ed3dSBarry Smith   PetscFunctionReturn(0);
898416022c9SBarry Smith }
899416022c9SBarry Smith 
9001eb62cbbSBarry Smith /*
9011eb62cbbSBarry Smith     This has to provide several versions.
9021eb62cbbSBarry Smith 
9031eb62cbbSBarry Smith      2) a) use only local smoothing updating outer values only once.
9041eb62cbbSBarry Smith         b) local smoothing updating outer values each inner iteration
905d6dfbf8fSBarry Smith      3) color updating out values betwen colors.
9061eb62cbbSBarry Smith */
9075615d1e5SSatish Balay #undef __FUNC__
9085615d1e5SSatish Balay #define __FUNC__ "MatRelax_MPIAIJ"
9098f6be9afSLois Curfman McInnes int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag,
910dbb450caSBarry Smith                            double fshift,int its,Vec xx)
9118a729477SBarry Smith {
91244a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
913d6dfbf8fSBarry Smith   Mat        AA = mat->A, BB = mat->B;
914ec8511deSBarry Smith   Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data;
915c16cb8f2SBarry Smith   Scalar     *b,*x,*xs,*ls,d,*v,sum;
9166abc6512SBarry Smith   int        ierr,*idx, *diag;
917416022c9SBarry Smith   int        n = mat->n, m = mat->m, i,shift = A->indexshift;
9188a729477SBarry Smith 
9193a40ed3dSBarry Smith   PetscFunctionBegin;
920d6dfbf8fSBarry Smith   VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls);
921dbb450caSBarry Smith   xs = x + shift; /* shift by one for index start of 1 */
922dbb450caSBarry Smith   ls = ls + shift;
92383e2fdc7SBarry Smith   if (!A->diag) {ierr = MatMarkDiag_SeqAIJ(AA); CHKERRQ(ierr);}
924d6dfbf8fSBarry Smith   diag = A->diag;
925c16cb8f2SBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
926da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
9273a40ed3dSBarry Smith       ierr = (*mat->A->ops.relax)(mat->A,bb,omega,flag,fshift,its,xx);CHKERRQ(ierr);
9283a40ed3dSBarry Smith       PetscFunctionReturn(0);
929da3a660dSBarry Smith     }
9303a40ed3dSBarry Smith     ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
9313a40ed3dSBarry Smith     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
932d6dfbf8fSBarry Smith     while (its--) {
933d6dfbf8fSBarry Smith       /* go down through the rows */
934d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
935d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
936dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
937dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
938d6dfbf8fSBarry Smith         sum  = b[i];
939d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
940dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
941d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
942dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
943dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
944d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
94555a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d;
946d6dfbf8fSBarry Smith       }
947d6dfbf8fSBarry Smith       /* come up through the rows */
948d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
949d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
950dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
951dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
952d6dfbf8fSBarry Smith         sum  = b[i];
953d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
954dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
955d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
956dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
957dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
958d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
95955a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d;
960d6dfbf8fSBarry Smith       }
961d6dfbf8fSBarry Smith     }
9623a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP){
963da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
9643a40ed3dSBarry Smith       ierr = (*mat->A->ops.relax)(mat->A,bb,omega,flag,fshift,its,xx);CHKERRQ(ierr);
9653a40ed3dSBarry Smith       PetscFunctionReturn(0);
966da3a660dSBarry Smith     }
9673a40ed3dSBarry Smith     ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
9683a40ed3dSBarry Smith     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,mat->Mvctx);CHKERRQ(ierr);
969d6dfbf8fSBarry Smith     while (its--) {
970d6dfbf8fSBarry Smith       for ( i=0; i<m; i++ ) {
971d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
972dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
973dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
974d6dfbf8fSBarry Smith         sum  = b[i];
975d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
976dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
977d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
978dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
979dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
980d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
98155a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d;
982d6dfbf8fSBarry Smith       }
983d6dfbf8fSBarry Smith     }
9843a40ed3dSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
985da3a660dSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
9863a40ed3dSBarry Smith       ierr = (*mat->A->ops.relax)(mat->A,bb,omega,flag,fshift,its,xx);CHKERRQ(ierr);
9873a40ed3dSBarry Smith       PetscFunctionReturn(0);
988da3a660dSBarry Smith     }
98943a90d84SBarry Smith     ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,
99078b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
99143a90d84SBarry Smith     ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD,
99278b31e54SBarry Smith                             mat->Mvctx); CHKERRQ(ierr);
993d6dfbf8fSBarry Smith     while (its--) {
994d6dfbf8fSBarry Smith       for ( i=m-1; i>-1; i-- ) {
995d6dfbf8fSBarry Smith         n    = A->i[i+1] - A->i[i];
996dbb450caSBarry Smith         idx  = A->j + A->i[i] + shift;
997dbb450caSBarry Smith         v    = A->a + A->i[i] + shift;
998d6dfbf8fSBarry Smith         sum  = b[i];
999d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,xs,v,idx,n);
1000dbb450caSBarry Smith         d    = fshift + A->a[diag[i]+shift];
1001d6dfbf8fSBarry Smith         n    = B->i[i+1] - B->i[i];
1002dbb450caSBarry Smith         idx  = B->j + B->i[i] + shift;
1003dbb450caSBarry Smith         v    = B->a + B->i[i] + shift;
1004d6dfbf8fSBarry Smith         SPARSEDENSEMDOT(sum,ls,v,idx,n);
100555a1b374SBarry Smith         x[i] = (1. - omega)*x[i] + omega*(sum + A->a[diag[i]+shift]*x[i])/d;
1006d6dfbf8fSBarry Smith       }
1007d6dfbf8fSBarry Smith     }
10083a40ed3dSBarry Smith   } else {
1009a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"Parallel SOR not supported");
1010c16cb8f2SBarry Smith   }
10113a40ed3dSBarry Smith   PetscFunctionReturn(0);
10128a729477SBarry Smith }
1013a66be287SLois Curfman McInnes 
10145615d1e5SSatish Balay #undef __FUNC__
1015d4bb536fSBarry Smith #define __FUNC__ "MatGetInfo_MPIAIJ"
10168f6be9afSLois Curfman McInnes int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,MatInfo *info)
1017a66be287SLois Curfman McInnes {
1018a66be287SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
1019a66be287SLois Curfman McInnes   Mat        A = mat->A, B = mat->B;
10204e220ebcSLois Curfman McInnes   int        ierr;
10214e220ebcSLois Curfman McInnes   double     isend[5], irecv[5];
1022a66be287SLois Curfman McInnes 
10233a40ed3dSBarry Smith   PetscFunctionBegin;
10244e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
10254e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info); CHKERRQ(ierr);
10264e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
10274e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
10284e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info); CHKERRQ(ierr);
10294e220ebcSLois Curfman McInnes   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
10304e220ebcSLois Curfman McInnes   isend[3] += info->memory;  isend[4] += info->mallocs;
1031a66be287SLois Curfman McInnes   if (flag == MAT_LOCAL) {
10324e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
10334e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
10344e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
10354e220ebcSLois Curfman McInnes     info->memory       = isend[3];
10364e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
1037a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
1038ca161407SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr);
10394e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
10404e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
10414e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
10424e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
10434e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1044a66be287SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
1045ca161407SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr);
10464e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
10474e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
10484e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
10494e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
10504e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1051a66be287SLois Curfman McInnes   }
10524e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
10534e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
10544e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
10558d700155SBarry Smith   info->rows_global       = (double)mat->M;
10568d700155SBarry Smith   info->columns_global    = (double)mat->N;
10578d700155SBarry Smith   info->rows_local        = (double)mat->m;
10588d700155SBarry Smith   info->columns_local     = (double)mat->N;
10594e220ebcSLois Curfman McInnes 
10603a40ed3dSBarry Smith   PetscFunctionReturn(0);
1061a66be287SLois Curfman McInnes }
1062a66be287SLois Curfman McInnes 
10635615d1e5SSatish Balay #undef __FUNC__
1064d4bb536fSBarry Smith #define __FUNC__ "MatSetOption_MPIAIJ"
10658f6be9afSLois Curfman McInnes int MatSetOption_MPIAIJ(Mat A,MatOption op)
1066c74985f6SBarry Smith {
1067c0bbcb79SLois Curfman McInnes   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
1068c74985f6SBarry Smith 
10693a40ed3dSBarry Smith   PetscFunctionBegin;
10706d4a8577SBarry Smith   if (op == MAT_NO_NEW_NONZERO_LOCATIONS ||
10716d4a8577SBarry Smith       op == MAT_YES_NEW_NONZERO_LOCATIONS ||
10726da5968aSLois Curfman McInnes       op == MAT_COLUMNS_UNSORTED ||
1073c2653b3dSLois Curfman McInnes       op == MAT_COLUMNS_SORTED ||
107496854ed6SLois Curfman McInnes       op == MAT_NEW_NONZERO_ALLOCATION_ERROR ||
1075c2653b3dSLois Curfman McInnes       op == MAT_NEW_NONZERO_LOCATION_ERROR) {
1076b1fbbac0SLois Curfman McInnes         MatSetOption(a->A,op);
1077b1fbbac0SLois Curfman McInnes         MatSetOption(a->B,op);
1078b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROW_ORIENTED) {
1079aeafbbfcSLois Curfman McInnes     a->roworiented = 1;
1080c0bbcb79SLois Curfman McInnes     MatSetOption(a->A,op);
1081c0bbcb79SLois Curfman McInnes     MatSetOption(a->B,op);
1082b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROWS_SORTED ||
10836da5968aSLois Curfman McInnes              op == MAT_ROWS_UNSORTED ||
10846d4a8577SBarry Smith              op == MAT_SYMMETRIC ||
10856d4a8577SBarry Smith              op == MAT_STRUCTURALLY_SYMMETRIC ||
10866d4a8577SBarry Smith              op == MAT_YES_NEW_DIAGONALS)
1087981c4779SBarry Smith     PLogInfo(A,"MatSetOption_MPIAIJ:Option ignored\n");
10886d4a8577SBarry Smith   else if (op == MAT_COLUMN_ORIENTED) {
10894b0e389bSBarry Smith     a->roworiented = 0;
10904b0e389bSBarry Smith     MatSetOption(a->A,op);
10914b0e389bSBarry Smith     MatSetOption(a->B,op);
10922b362799SSatish Balay   } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) {
109390f02eecSBarry Smith     a->donotstash = 1;
10943a40ed3dSBarry Smith   } else if (op == MAT_NO_NEW_DIAGONALS){
10953a40ed3dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");
10963a40ed3dSBarry Smith   } else {
10973a40ed3dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"unknown option");
10983a40ed3dSBarry Smith   }
10993a40ed3dSBarry Smith   PetscFunctionReturn(0);
1100c74985f6SBarry Smith }
1101c74985f6SBarry Smith 
11025615d1e5SSatish Balay #undef __FUNC__
1103d4bb536fSBarry Smith #define __FUNC__ "MatGetSize_MPIAIJ"
11048f6be9afSLois Curfman McInnes int MatGetSize_MPIAIJ(Mat matin,int *m,int *n)
1105c74985f6SBarry Smith {
110644a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
11073a40ed3dSBarry Smith 
11083a40ed3dSBarry Smith   PetscFunctionBegin;
11090752156aSBarry Smith   if (m) *m = mat->M;
11100752156aSBarry Smith   if (n) *n = mat->N;
11113a40ed3dSBarry Smith   PetscFunctionReturn(0);
1112c74985f6SBarry Smith }
1113c74985f6SBarry Smith 
11145615d1e5SSatish Balay #undef __FUNC__
1115d4bb536fSBarry Smith #define __FUNC__ "MatGetLocalSize_MPIAIJ"
11168f6be9afSLois Curfman McInnes int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n)
1117c74985f6SBarry Smith {
111844a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
11193a40ed3dSBarry Smith 
11203a40ed3dSBarry Smith   PetscFunctionBegin;
11210752156aSBarry Smith   if (m) *m = mat->m;
11220752156aSBarry Smith   if (n) *n = mat->N;
11233a40ed3dSBarry Smith   PetscFunctionReturn(0);
1124c74985f6SBarry Smith }
1125c74985f6SBarry Smith 
11265615d1e5SSatish Balay #undef __FUNC__
1127d4bb536fSBarry Smith #define __FUNC__ "MatGetOwnershipRange_MPIAIJ"
11288f6be9afSLois Curfman McInnes int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n)
1129c74985f6SBarry Smith {
113044a69424SLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
11313a40ed3dSBarry Smith 
11323a40ed3dSBarry Smith   PetscFunctionBegin;
1133c74985f6SBarry Smith   *m = mat->rstart; *n = mat->rend;
11343a40ed3dSBarry Smith   PetscFunctionReturn(0);
1135c74985f6SBarry Smith }
1136c74985f6SBarry Smith 
11376d84be18SBarry Smith extern int MatGetRow_SeqAIJ(Mat,int,int*,int**,Scalar**);
11386d84be18SBarry Smith extern int MatRestoreRow_SeqAIJ(Mat,int,int*,int**,Scalar**);
11396d84be18SBarry Smith 
11405615d1e5SSatish Balay #undef __FUNC__
11415615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIAIJ"
11426d84be18SBarry Smith int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v)
114339e00950SLois Curfman McInnes {
1144154123eaSLois Curfman McInnes   Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data;
114570f0671dSBarry Smith   Scalar     *vworkA, *vworkB, **pvA, **pvB,*v_p;
1146154123eaSLois Curfman McInnes   int        i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart;
1147154123eaSLois Curfman McInnes   int        nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend;
114870f0671dSBarry Smith   int        *cmap, *idx_p;
114939e00950SLois Curfman McInnes 
11503a40ed3dSBarry Smith   PetscFunctionBegin;
1151a8c6a408SBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active");
11527a0afa10SBarry Smith   mat->getrowactive = PETSC_TRUE;
11537a0afa10SBarry Smith 
115470f0671dSBarry Smith   if (!mat->rowvalues && (idx || v)) {
11557a0afa10SBarry Smith     /*
11567a0afa10SBarry Smith         allocate enough space to hold information from the longest row.
11577a0afa10SBarry Smith     */
11587a0afa10SBarry Smith     Mat_SeqAIJ *Aa = (Mat_SeqAIJ *) mat->A->data,*Ba = (Mat_SeqAIJ *) mat->B->data;
1159c16cb8f2SBarry Smith     int     max = 1,m = mat->m,tmp;
1160c16cb8f2SBarry Smith     for ( i=0; i<m; i++ ) {
11617a0afa10SBarry Smith       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
11627a0afa10SBarry Smith       if (max < tmp) { max = tmp; }
11637a0afa10SBarry Smith     }
11647a0afa10SBarry Smith     mat->rowvalues = (Scalar *) PetscMalloc( max*(sizeof(int)+sizeof(Scalar)));
11657a0afa10SBarry Smith     CHKPTRQ(mat->rowvalues);
11667a0afa10SBarry Smith     mat->rowindices = (int *) (mat->rowvalues + max);
11677a0afa10SBarry Smith   }
11687a0afa10SBarry Smith 
1169a8c6a408SBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Only local rows")
1170abc0e9e4SLois Curfman McInnes   lrow = row - rstart;
117139e00950SLois Curfman McInnes 
1172154123eaSLois Curfman McInnes   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1173154123eaSLois Curfman McInnes   if (!v)   {pvA = 0; pvB = 0;}
1174154123eaSLois Curfman McInnes   if (!idx) {pcA = 0; if (!v) pcB = 0;}
117538597bd4SSatish Balay   ierr = (*mat->A->ops.getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
117638597bd4SSatish Balay   ierr = (*mat->B->ops.getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
1177154123eaSLois Curfman McInnes   nztot = nzA + nzB;
1178154123eaSLois Curfman McInnes 
117970f0671dSBarry Smith   cmap  = mat->garray;
1180154123eaSLois Curfman McInnes   if (v  || idx) {
1181154123eaSLois Curfman McInnes     if (nztot) {
1182154123eaSLois Curfman McInnes       /* Sort by increasing column numbers, assuming A and B already sorted */
118370f0671dSBarry Smith       int imark = -1;
1184154123eaSLois Curfman McInnes       if (v) {
118570f0671dSBarry Smith         *v = v_p = mat->rowvalues;
118639e00950SLois Curfman McInnes         for ( i=0; i<nzB; i++ ) {
118770f0671dSBarry Smith           if (cmap[cworkB[i]] < cstart)   v_p[i] = vworkB[i];
1188154123eaSLois Curfman McInnes           else break;
1189154123eaSLois Curfman McInnes         }
1190154123eaSLois Curfman McInnes         imark = i;
119170f0671dSBarry Smith         for ( i=0; i<nzA; i++ )     v_p[imark+i] = vworkA[i];
119270f0671dSBarry Smith         for ( i=imark; i<nzB; i++ ) v_p[nzA+i]   = vworkB[i];
1193154123eaSLois Curfman McInnes       }
1194154123eaSLois Curfman McInnes       if (idx) {
119570f0671dSBarry Smith         *idx = idx_p = mat->rowindices;
119670f0671dSBarry Smith         if (imark > -1) {
119770f0671dSBarry Smith           for ( i=0; i<imark; i++ ) {
119870f0671dSBarry Smith             idx_p[i] = cmap[cworkB[i]];
119970f0671dSBarry Smith           }
120070f0671dSBarry Smith         } else {
1201154123eaSLois Curfman McInnes           for ( i=0; i<nzB; i++ ) {
120270f0671dSBarry Smith             if (cmap[cworkB[i]] < cstart)   idx_p[i] = cmap[cworkB[i]];
1203154123eaSLois Curfman McInnes             else break;
1204154123eaSLois Curfman McInnes           }
1205154123eaSLois Curfman McInnes           imark = i;
120670f0671dSBarry Smith         }
120770f0671dSBarry Smith         for ( i=0; i<nzA; i++ )     idx_p[imark+i] = cstart + cworkA[i];
120870f0671dSBarry Smith         for ( i=imark; i<nzB; i++ ) idx_p[nzA+i]   = cmap[cworkB[i]];
120939e00950SLois Curfman McInnes       }
121039e00950SLois Curfman McInnes     }
12111ca473b0SSatish Balay     else {
12121ca473b0SSatish Balay       if (idx) *idx = 0;
12131ca473b0SSatish Balay       if (v)   *v   = 0;
12141ca473b0SSatish Balay     }
1215154123eaSLois Curfman McInnes   }
121639e00950SLois Curfman McInnes   *nz = nztot;
121738597bd4SSatish Balay   ierr = (*mat->A->ops.restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
121838597bd4SSatish Balay   ierr = (*mat->B->ops.restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
12193a40ed3dSBarry Smith   PetscFunctionReturn(0);
122039e00950SLois Curfman McInnes }
122139e00950SLois Curfman McInnes 
12225615d1e5SSatish Balay #undef __FUNC__
1223d4bb536fSBarry Smith #define __FUNC__ "MatRestoreRow_MPIAIJ"
12246d84be18SBarry Smith int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v)
122539e00950SLois Curfman McInnes {
12267a0afa10SBarry Smith   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
12273a40ed3dSBarry Smith 
12283a40ed3dSBarry Smith   PetscFunctionBegin;
12297a0afa10SBarry Smith   if (aij->getrowactive == PETSC_FALSE) {
1230a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called");
12317a0afa10SBarry Smith   }
12327a0afa10SBarry Smith   aij->getrowactive = PETSC_FALSE;
12333a40ed3dSBarry Smith   PetscFunctionReturn(0);
123439e00950SLois Curfman McInnes }
123539e00950SLois Curfman McInnes 
12365615d1e5SSatish Balay #undef __FUNC__
12375615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIAIJ"
12388f6be9afSLois Curfman McInnes int MatNorm_MPIAIJ(Mat mat,NormType type,double *norm)
1239855ac2c5SLois Curfman McInnes {
1240855ac2c5SLois Curfman McInnes   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
1241ec8511deSBarry Smith   Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data;
1242416022c9SBarry Smith   int        ierr, i, j, cstart = aij->cstart,shift = amat->indexshift;
1243416022c9SBarry Smith   double     sum = 0.0;
124404ca555eSLois Curfman McInnes   Scalar     *v;
124504ca555eSLois Curfman McInnes 
12463a40ed3dSBarry Smith   PetscFunctionBegin;
124717699dbbSLois Curfman McInnes   if (aij->size == 1) {
124814183eadSLois Curfman McInnes     ierr =  MatNorm(aij->A,type,norm); CHKERRQ(ierr);
124937fa93a5SLois Curfman McInnes   } else {
125004ca555eSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
125104ca555eSLois Curfman McInnes       v = amat->a;
125204ca555eSLois Curfman McInnes       for (i=0; i<amat->nz; i++ ) {
12533a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX)
125404ca555eSLois Curfman McInnes         sum += real(conj(*v)*(*v)); v++;
125504ca555eSLois Curfman McInnes #else
125604ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
125704ca555eSLois Curfman McInnes #endif
125804ca555eSLois Curfman McInnes       }
125904ca555eSLois Curfman McInnes       v = bmat->a;
126004ca555eSLois Curfman McInnes       for (i=0; i<bmat->nz; i++ ) {
12613a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX)
126204ca555eSLois Curfman McInnes         sum += real(conj(*v)*(*v)); v++;
126304ca555eSLois Curfman McInnes #else
126404ca555eSLois Curfman McInnes         sum += (*v)*(*v); v++;
126504ca555eSLois Curfman McInnes #endif
126604ca555eSLois Curfman McInnes       }
1267ca161407SBarry Smith       ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr);
126804ca555eSLois Curfman McInnes       *norm = sqrt(*norm);
12693a40ed3dSBarry Smith     } else if (type == NORM_1) { /* max column norm */
127004ca555eSLois Curfman McInnes       double *tmp, *tmp2;
127104ca555eSLois Curfman McInnes       int    *jj, *garray = aij->garray;
1272758f045eSSatish Balay       tmp  = (double *) PetscMalloc( (aij->N+1)*sizeof(double) ); CHKPTRQ(tmp);
1273758f045eSSatish Balay       tmp2 = (double *) PetscMalloc( (aij->N+1)*sizeof(double) ); CHKPTRQ(tmp2);
1274cddf8d76SBarry Smith       PetscMemzero(tmp,aij->N*sizeof(double));
127504ca555eSLois Curfman McInnes       *norm = 0.0;
127604ca555eSLois Curfman McInnes       v = amat->a; jj = amat->j;
127704ca555eSLois Curfman McInnes       for ( j=0; j<amat->nz; j++ ) {
1278579c6b6fSBarry Smith         tmp[cstart + *jj++ + shift] += PetscAbsScalar(*v);  v++;
127904ca555eSLois Curfman McInnes       }
128004ca555eSLois Curfman McInnes       v = bmat->a; jj = bmat->j;
128104ca555eSLois Curfman McInnes       for ( j=0; j<bmat->nz; j++ ) {
1282579c6b6fSBarry Smith         tmp[garray[*jj++ + shift]] += PetscAbsScalar(*v); v++;
128304ca555eSLois Curfman McInnes       }
1284ca161407SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr);
128504ca555eSLois Curfman McInnes       for ( j=0; j<aij->N; j++ ) {
128604ca555eSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
128704ca555eSLois Curfman McInnes       }
12880452661fSBarry Smith       PetscFree(tmp); PetscFree(tmp2);
12893a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
1290515d9167SLois Curfman McInnes       double ntemp = 0.0;
129104ca555eSLois Curfman McInnes       for ( j=0; j<amat->m; j++ ) {
1292dbb450caSBarry Smith         v = amat->a + amat->i[j] + shift;
129304ca555eSLois Curfman McInnes         sum = 0.0;
129404ca555eSLois Curfman McInnes         for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) {
1295cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
129604ca555eSLois Curfman McInnes         }
1297dbb450caSBarry Smith         v = bmat->a + bmat->i[j] + shift;
129804ca555eSLois Curfman McInnes         for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) {
1299cddf8d76SBarry Smith           sum += PetscAbsScalar(*v); v++;
130004ca555eSLois Curfman McInnes         }
1301515d9167SLois Curfman McInnes         if (sum > ntemp) ntemp = sum;
130204ca555eSLois Curfman McInnes       }
1303ca161407SBarry Smith       ierr = MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,mat->comm);CHKERRQ(ierr);
1304ca161407SBarry Smith     } else {
1305a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"No support for two norm");
130604ca555eSLois Curfman McInnes     }
130737fa93a5SLois Curfman McInnes   }
13083a40ed3dSBarry Smith   PetscFunctionReturn(0);
1309855ac2c5SLois Curfman McInnes }
1310855ac2c5SLois Curfman McInnes 
13115615d1e5SSatish Balay #undef __FUNC__
13125615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIAIJ"
13138f6be9afSLois Curfman McInnes int MatTranspose_MPIAIJ(Mat A,Mat *matout)
1314b7c46309SBarry Smith {
1315b7c46309SBarry Smith   Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data;
1316dbb450caSBarry Smith   Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data;
1317416022c9SBarry Smith   int        ierr,shift = Aloc->indexshift;
1318b7c46309SBarry Smith   int        M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct;
13193a40ed3dSBarry Smith   Mat        B;
1320b7c46309SBarry Smith   Scalar     *array;
1321b7c46309SBarry Smith 
13223a40ed3dSBarry Smith   PetscFunctionBegin;
1323d4bb536fSBarry Smith   if (matout == PETSC_NULL && M != N) {
1324a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place");
1325d4bb536fSBarry Smith   }
1326d4bb536fSBarry Smith 
1327d4bb536fSBarry Smith   ierr = MatCreateMPIAIJ(A->comm,a->n,a->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr);
1328b7c46309SBarry Smith 
1329b7c46309SBarry Smith   /* copy over the A part */
1330ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*) a->A->data;
1331b7c46309SBarry Smith   m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1332b7c46309SBarry Smith   row = a->rstart;
1333dbb450caSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;}
1334b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1335416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1336b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i];
1337b7c46309SBarry Smith   }
1338b7c46309SBarry Smith   aj = Aloc->j;
13394af08d9eSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= a->cstart + shift;}
1340b7c46309SBarry Smith 
1341b7c46309SBarry Smith   /* copy over the B part */
1342ec8511deSBarry Smith   Aloc = (Mat_SeqAIJ*) a->B->data;
1343b7c46309SBarry Smith   m = Aloc->m;  ai = Aloc->i; aj = Aloc->j; array = Aloc->a;
1344b7c46309SBarry Smith   row = a->rstart;
13450452661fSBarry Smith   ct = cols = (int *) PetscMalloc( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols);
1346dbb450caSBarry Smith   for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];}
1347b7c46309SBarry Smith   for ( i=0; i<m; i++ ) {
1348416022c9SBarry Smith     ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr);
1349b7c46309SBarry Smith     row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i];
1350b7c46309SBarry Smith   }
13510452661fSBarry Smith   PetscFree(ct);
13526d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
13536d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
13543638b69dSLois Curfman McInnes   if (matout != PETSC_NULL) {
13550de55854SLois Curfman McInnes     *matout = B;
13560de55854SLois Curfman McInnes   } else {
13570de55854SLois Curfman McInnes     /* This isn't really an in-place transpose .... but free data structures from a */
13580452661fSBarry Smith     PetscFree(a->rowners);
13590de55854SLois Curfman McInnes     ierr = MatDestroy(a->A); CHKERRQ(ierr);
13600de55854SLois Curfman McInnes     ierr = MatDestroy(a->B); CHKERRQ(ierr);
13610452661fSBarry Smith     if (a->colmap) PetscFree(a->colmap);
13620452661fSBarry Smith     if (a->garray) PetscFree(a->garray);
13630de55854SLois Curfman McInnes     if (a->lvec) VecDestroy(a->lvec);
1364a56f8943SBarry Smith     if (a->Mvctx) VecScatterDestroy(a->Mvctx);
13650452661fSBarry Smith     PetscFree(a);
1366f09e8eb9SSatish Balay     PetscMemcpy(A,B,sizeof(struct _p_Mat));
13670452661fSBarry Smith     PetscHeaderDestroy(B);
13680de55854SLois Curfman McInnes   }
13693a40ed3dSBarry Smith   PetscFunctionReturn(0);
1370b7c46309SBarry Smith }
1371b7c46309SBarry Smith 
13725615d1e5SSatish Balay #undef __FUNC__
13735615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIAIJ"
13744b967eb1SSatish Balay int MatDiagonalScale_MPIAIJ(Mat mat,Vec ll,Vec rr)
1375a008b906SSatish Balay {
13764b967eb1SSatish Balay   Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data;
13774b967eb1SSatish Balay   Mat a = aij->A, b = aij->B;
1378a008b906SSatish Balay   int ierr,s1,s2,s3;
1379a008b906SSatish Balay 
13803a40ed3dSBarry Smith   PetscFunctionBegin;
13814b967eb1SSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3); CHKERRQ(ierr);
13824b967eb1SSatish Balay   if (rr) {
13834b967eb1SSatish Balay     s3 = aij->n;
13844b967eb1SSatish Balay     VecGetLocalSize_Fast(rr,s1);
1385a8c6a408SBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,0,"right vector non-conforming local size");
13864b967eb1SSatish Balay     /* Overlap communication with computation. */
138743a90d84SBarry Smith     ierr = VecScatterBegin(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx); CHKERRQ(ierr);
1388a008b906SSatish Balay   }
13894b967eb1SSatish Balay   if (ll) {
13904b967eb1SSatish Balay     VecGetLocalSize_Fast(ll,s1);
1391a8c6a408SBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"left vector non-conforming local size");
1392c351683dSSatish Balay     ierr = (*b->ops.diagonalscale)(b,ll,0); CHKERRQ(ierr);
13934b967eb1SSatish Balay   }
13944b967eb1SSatish Balay   /* scale  the diagonal block */
1395c351683dSSatish Balay   ierr = (*a->ops.diagonalscale)(a,ll,rr); CHKERRQ(ierr);
13964b967eb1SSatish Balay 
13974b967eb1SSatish Balay   if (rr) {
13984b967eb1SSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
139943a90d84SBarry Smith     ierr = VecScatterEnd(rr,aij->lvec,INSERT_VALUES,SCATTER_FORWARD,aij->Mvctx); CHKERRQ(ierr);
1400c351683dSSatish Balay     ierr = (*b->ops.diagonalscale)(b,0,aij->lvec); CHKERRQ(ierr);
14014b967eb1SSatish Balay   }
14024b967eb1SSatish Balay 
14033a40ed3dSBarry Smith   PetscFunctionReturn(0);
1404a008b906SSatish Balay }
1405a008b906SSatish Balay 
1406a008b906SSatish Balay 
1407682d7d0cSBarry Smith extern int MatPrintHelp_SeqAIJ(Mat);
14085615d1e5SSatish Balay #undef __FUNC__
1409d4bb536fSBarry Smith #define __FUNC__ "MatPrintHelp_MPIAIJ"
14108f6be9afSLois Curfman McInnes int MatPrintHelp_MPIAIJ(Mat A)
1411682d7d0cSBarry Smith {
1412682d7d0cSBarry Smith   Mat_MPIAIJ *a   = (Mat_MPIAIJ*) A->data;
14133a40ed3dSBarry Smith   int        ierr;
1414682d7d0cSBarry Smith 
14153a40ed3dSBarry Smith   PetscFunctionBegin;
14163a40ed3dSBarry Smith   if (!a->rank) {
14173a40ed3dSBarry Smith     ierr = MatPrintHelp_SeqAIJ(a->A);CHKERRQ(ierr);
14183a40ed3dSBarry Smith   }
14193a40ed3dSBarry Smith   PetscFunctionReturn(0);
1420682d7d0cSBarry Smith }
1421682d7d0cSBarry Smith 
14225615d1e5SSatish Balay #undef __FUNC__
1423d4bb536fSBarry Smith #define __FUNC__ "MatGetBlockSize_MPIAIJ"
14248f6be9afSLois Curfman McInnes int MatGetBlockSize_MPIAIJ(Mat A,int *bs)
14255a838052SSatish Balay {
14263a40ed3dSBarry Smith   PetscFunctionBegin;
14275a838052SSatish Balay   *bs = 1;
14283a40ed3dSBarry Smith   PetscFunctionReturn(0);
14295a838052SSatish Balay }
14305615d1e5SSatish Balay #undef __FUNC__
1431d4bb536fSBarry Smith #define __FUNC__ "MatSetUnfactored_MPIAIJ"
14328f6be9afSLois Curfman McInnes int MatSetUnfactored_MPIAIJ(Mat A)
1433bb5a7306SBarry Smith {
1434bb5a7306SBarry Smith   Mat_MPIAIJ *a   = (Mat_MPIAIJ*) A->data;
1435bb5a7306SBarry Smith   int        ierr;
14363a40ed3dSBarry Smith 
14373a40ed3dSBarry Smith   PetscFunctionBegin;
1438bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A); CHKERRQ(ierr);
14393a40ed3dSBarry Smith   PetscFunctionReturn(0);
1440bb5a7306SBarry Smith }
1441bb5a7306SBarry Smith 
1442d4bb536fSBarry Smith #undef __FUNC__
1443d4bb536fSBarry Smith #define __FUNC__ "MatEqual_MPIAIJ"
1444d4bb536fSBarry Smith int MatEqual_MPIAIJ(Mat A, Mat B, PetscTruth *flag)
1445d4bb536fSBarry Smith {
1446d4bb536fSBarry Smith   Mat_MPIAIJ *matB = (Mat_MPIAIJ *) B->data,*matA = (Mat_MPIAIJ *) A->data;
1447d4bb536fSBarry Smith   Mat        a, b, c, d;
1448d4bb536fSBarry Smith   PetscTruth flg;
1449d4bb536fSBarry Smith   int        ierr;
1450d4bb536fSBarry Smith 
14513a40ed3dSBarry Smith   PetscFunctionBegin;
1452a8c6a408SBarry Smith   if (B->type != MATMPIAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,0,"Matrices must be same type");
1453d4bb536fSBarry Smith   a = matA->A; b = matA->B;
1454d4bb536fSBarry Smith   c = matB->A; d = matB->B;
1455d4bb536fSBarry Smith 
1456d4bb536fSBarry Smith   ierr = MatEqual(a, c, &flg); CHKERRQ(ierr);
1457d4bb536fSBarry Smith   if (flg == PETSC_TRUE) {
1458d4bb536fSBarry Smith     ierr = MatEqual(b, d, &flg); CHKERRQ(ierr);
1459d4bb536fSBarry Smith   }
1460ca161407SBarry Smith   ierr = MPI_Allreduce(&flg, flag, 1, MPI_INT, MPI_LAND, A->comm);CHKERRQ(ierr);
14613a40ed3dSBarry Smith   PetscFunctionReturn(0);
1462d4bb536fSBarry Smith }
1463d4bb536fSBarry Smith 
14648f6be9afSLois Curfman McInnes extern int MatConvertSameType_MPIAIJ(Mat,Mat *,int);
14652f86bd48SSatish Balay extern int MatIncreaseOverlap_MPIAIJ(Mat , int, IS *, int);
14660a198c4cSBarry Smith extern int MatFDColoringCreate_MPIAIJ(Mat,ISColoring,MatFDColoring);
14670a198c4cSBarry Smith extern int MatGetSubMatrices_MPIAIJ (Mat ,int , IS *,IS *,MatGetSubMatrixCall,Mat **);
1468*6a6a5d1dSBarry Smith extern int MatGetSubMatrix_MPIAIJ (Mat ,IS,IS,int,MatGetSubMatrixCall,Mat *);
146900e6dbe6SBarry Smith 
14708a729477SBarry Smith /* -------------------------------------------------------------------*/
14712ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ,
147239e00950SLois Curfman McInnes        MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ,
147344a69424SLois Curfman McInnes        MatMult_MPIAIJ,MatMultAdd_MPIAIJ,
147444a69424SLois Curfman McInnes        MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ,
147536ce4990SBarry Smith        0,0,
147636ce4990SBarry Smith        0,0,
147736ce4990SBarry Smith        0,0,
147844a69424SLois Curfman McInnes        MatRelax_MPIAIJ,
1479b7c46309SBarry Smith        MatTranspose_MPIAIJ,
1480d4bb536fSBarry Smith        MatGetInfo_MPIAIJ,MatEqual_MPIAIJ,
1481a008b906SSatish Balay        MatGetDiagonal_MPIAIJ,MatDiagonalScale_MPIAIJ,MatNorm_MPIAIJ,
1482ee50ffe9SBarry Smith        MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ,
14831eb62cbbSBarry Smith        0,
1484299609e3SLois Curfman McInnes        MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ,
148536ce4990SBarry Smith        0,0,0,0,
1486d1710a03SLois Curfman McInnes        MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ,
148736ce4990SBarry Smith        0,0,
148894a9d846SBarry Smith        0,0,MatConvertSameType_MPIAIJ,0,0,
1489b49de8d1SLois Curfman McInnes        0,0,0,
1490598137ffSSatish Balay        MatGetSubMatrices_MPIAIJ,MatIncreaseOverlap_MPIAIJ,MatGetValues_MPIAIJ,0,
1491052efed2SBarry Smith        MatPrintHelp_MPIAIJ,
14923b2fbd54SBarry Smith        MatScale_MPIAIJ,0,0,0,
14930a198c4cSBarry Smith        MatGetBlockSize_MPIAIJ,0,0,0,0,
149400e6dbe6SBarry Smith        MatFDColoringCreate_MPIAIJ,0,MatSetUnfactored_MPIAIJ,
1495ca161407SBarry Smith        0,0,MatGetSubMatrix_MPIAIJ};
149636ce4990SBarry Smith 
14978a729477SBarry Smith 
14985615d1e5SSatish Balay #undef __FUNC__
14995615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIAIJ"
15001987afe7SBarry Smith /*@C
1501ff756334SLois Curfman McInnes    MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format
15023a511b96SLois Curfman McInnes    (the default parallel PETSc format).  For good matrix assembly performance
15033a511b96SLois Curfman McInnes    the user should preallocate the matrix storage by setting the parameters
15043a511b96SLois Curfman McInnes    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
15053a511b96SLois Curfman McInnes    performance can be increased by more than a factor of 50.
15068a729477SBarry Smith 
15078a729477SBarry Smith    Input Parameters:
15081eb62cbbSBarry Smith .  comm - MPI communicator
15097d3e4905SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
151092e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
151192e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
15121a3896d6SBarry Smith .  n - This value should be the same as the local size used in creating the
15131a3896d6SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
15141a3896d6SBarry Smith        calculated if N is given) For square matrices n is almost always m.
15157d3e4905SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
151692e8d321SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
1517ab693e5aSLois Curfman McInnes .  d_nz - number of nonzeros per row in diagonal portion of local submatrix
1518ff756334SLois Curfman McInnes            (same for all local rows)
15192bd5e0b2SLois Curfman McInnes .  d_nzz - array containing the number of nonzeros in the various rows of the
152092e8d321SLois Curfman McInnes            diagonal portion of the local submatrix (possibly different for each row)
15212bd5e0b2SLois Curfman McInnes            or PETSC_NULL. You must leave room for the diagonal entry even if
15222bd5e0b2SLois Curfman McInnes            it is zero.
15232bd5e0b2SLois Curfman McInnes .  o_nz - number of nonzeros per row in the off-diagonal portion of local
1524ab693e5aSLois Curfman McInnes            submatrix (same for all local rows).
15252bd5e0b2SLois Curfman McInnes .  o_nzz - array containing the number of nonzeros in the various rows of the
15262bd5e0b2SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
15272bd5e0b2SLois Curfman McInnes            each row) or PETSC_NULL.
15288a729477SBarry Smith 
1529ff756334SLois Curfman McInnes    Output Parameter:
153044cd7ae7SLois Curfman McInnes .  A - the matrix
15318a729477SBarry Smith 
1532ff756334SLois Curfman McInnes    Notes:
1533ff756334SLois Curfman McInnes    The AIJ format (also called the Yale sparse matrix format or
1534ff756334SLois Curfman McInnes    compressed row storage), is fully compatible with standard Fortran 77
15350002213bSLois Curfman McInnes    storage.  That is, the stored row and column indices can begin at
15360002213bSLois Curfman McInnes    either one (as in Fortran) or zero.  See the users manual for details.
1537ff756334SLois Curfman McInnes 
1538ff756334SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
1539ff756334SLois Curfman McInnes    (possibly both).
1540ff756334SLois Curfman McInnes 
15415511cfe3SLois Curfman McInnes    By default, this format uses inodes (identical nodes) when possible.
15425511cfe3SLois Curfman McInnes    We search for consecutive rows with the same nonzero structure, thereby
15435511cfe3SLois Curfman McInnes    reusing matrix information to achieve increased efficiency.
15445511cfe3SLois Curfman McInnes 
15455511cfe3SLois Curfman McInnes    Options Database Keys:
15465511cfe3SLois Curfman McInnes $    -mat_aij_no_inode  - Do not use inodes
15476e62573dSLois Curfman McInnes $    -mat_aij_inode_limit <limit> - Set inode limit.
15486e62573dSLois Curfman McInnes $        (max limit=5)
15496e62573dSLois Curfman McInnes $    -mat_aij_oneindex - Internally use indexing starting at 1
15506e62573dSLois Curfman McInnes $        rather than 0.  Note: When calling MatSetValues(),
15516e62573dSLois Curfman McInnes $        the user still MUST index entries starting at 0!
15525511cfe3SLois Curfman McInnes 
1553e0245417SLois Curfman McInnes    Storage Information:
1554e0245417SLois Curfman McInnes    For a square global matrix we define each processor's diagonal portion
1555e0245417SLois Curfman McInnes    to be its local rows and the corresponding columns (a square submatrix);
1556e0245417SLois Curfman McInnes    each processor's off-diagonal portion encompasses the remainder of the
1557e0245417SLois Curfman McInnes    local matrix (a rectangular submatrix).
1558e0245417SLois Curfman McInnes 
1559e0245417SLois Curfman McInnes    The user can specify preallocated storage for the diagonal part of
15605ace5be8SLois Curfman McInnes    the local submatrix with either d_nz or d_nnz (not both).  Set
15615ace5be8SLois Curfman McInnes    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
15625ace5be8SLois Curfman McInnes    memory allocation.  Likewise, specify preallocated storage for the
15635ace5be8SLois Curfman McInnes    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
1564ff756334SLois Curfman McInnes 
15655511cfe3SLois Curfman McInnes    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
15665511cfe3SLois Curfman McInnes    the figure below we depict these three local rows and all columns (0-11).
15672191d07cSBarry Smith 
1568b810aeb4SBarry Smith $          0 1 2 3 4 5 6 7 8 9 10 11
1569b810aeb4SBarry Smith $         -------------------
15705511cfe3SLois Curfman McInnes $  row 3  |  o o o d d d o o o o o o
15715511cfe3SLois Curfman McInnes $  row 4  |  o o o d d d o o o o o o
15725511cfe3SLois Curfman McInnes $  row 5  |  o o o d d d o o o o o o
15735511cfe3SLois Curfman McInnes $         -------------------
1574b810aeb4SBarry Smith $
1575b810aeb4SBarry Smith 
15765511cfe3SLois Curfman McInnes    Thus, any entries in the d locations are stored in the d (diagonal)
15775511cfe3SLois Curfman McInnes    submatrix, and any entries in the o locations are stored in the
15785511cfe3SLois Curfman McInnes    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
15795511cfe3SLois Curfman McInnes    stored simply in the MATSEQAIJ format for compressed row storage.
15805511cfe3SLois Curfman McInnes 
15815511cfe3SLois Curfman McInnes    Now d_nz should indicate the number of nonzeros per row in the d matrix,
15825511cfe3SLois Curfman McInnes    and o_nz should indicate the number of nonzeros per row in the o matrix.
15835511cfe3SLois Curfman McInnes    In general, for PDE problems in which most nonzeros are near the diagonal,
15843d323bbdSBarry Smith    one expects d_nz >> o_nz. For large problems you MUST preallocate memory
158592e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
15866da5968aSLois Curfman McInnes    matrices.
15873a511b96SLois Curfman McInnes 
1588dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel
1589ff756334SLois Curfman McInnes 
1590fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
15918a729477SBarry Smith @*/
15921eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N,
159344cd7ae7SLois Curfman McInnes                     int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
15948a729477SBarry Smith {
159544cd7ae7SLois Curfman McInnes   Mat          B;
159644cd7ae7SLois Curfman McInnes   Mat_MPIAIJ   *b;
159736ce4990SBarry Smith   int          ierr, i,sum[2],work[2],size;
1598416022c9SBarry Smith 
15993a40ed3dSBarry Smith   PetscFunctionBegin;
16003914022bSBarry Smith   MPI_Comm_size(comm,&size);
16013914022bSBarry Smith   if (size == 1) {
16023914022bSBarry Smith     if (M == PETSC_DECIDE) M = m;
16033914022bSBarry Smith     if (N == PETSC_DECIDE) N = n;
16043914022bSBarry Smith     ierr = MatCreateSeqAIJ(comm,M,N,d_nz,d_nnz,A); CHKERRQ(ierr);
16053a40ed3dSBarry Smith     PetscFunctionReturn(0);
16063914022bSBarry Smith   }
16073914022bSBarry Smith 
160844cd7ae7SLois Curfman McInnes   *A = 0;
1609d4bb536fSBarry Smith   PetscHeaderCreate(B,_p_Mat,MAT_COOKIE,MATMPIAIJ,comm,MatDestroy,MatView);
161044cd7ae7SLois Curfman McInnes   PLogObjectCreate(B);
161144cd7ae7SLois Curfman McInnes   B->data       = (void *) (b = PetscNew(Mat_MPIAIJ)); CHKPTRQ(b);
161244cd7ae7SLois Curfman McInnes   PetscMemzero(b,sizeof(Mat_MPIAIJ));
161344cd7ae7SLois Curfman McInnes   PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps));
161444cd7ae7SLois Curfman McInnes   B->destroy    = MatDestroy_MPIAIJ;
161544cd7ae7SLois Curfman McInnes   B->view       = MatView_MPIAIJ;
161644cd7ae7SLois Curfman McInnes   B->factor     = 0;
161744cd7ae7SLois Curfman McInnes   B->assembled  = PETSC_FALSE;
161890f02eecSBarry Smith   B->mapping    = 0;
1619d6dfbf8fSBarry Smith 
162047794344SBarry Smith   B->insertmode = NOT_SET_VALUES;
16219eb4d147SSatish Balay   b->size       = size;
162244cd7ae7SLois Curfman McInnes   MPI_Comm_rank(comm,&b->rank);
16231eb62cbbSBarry Smith 
16243a40ed3dSBarry Smith   if (m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) {
1625a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz");
16263a40ed3dSBarry Smith   }
16271987afe7SBarry Smith 
1628dbd7a890SLois Curfman McInnes   if (M == PETSC_DECIDE || N == PETSC_DECIDE) {
16291eb62cbbSBarry Smith     work[0] = m; work[1] = n;
1630ca161407SBarry Smith     ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr);
1631dbd7a890SLois Curfman McInnes     if (M == PETSC_DECIDE) M = sum[0];
1632dbd7a890SLois Curfman McInnes     if (N == PETSC_DECIDE) N = sum[1];
16331eb62cbbSBarry Smith   }
163444cd7ae7SLois Curfman McInnes   if (m == PETSC_DECIDE) {m = M/b->size + ((M % b->size) > b->rank);}
163544cd7ae7SLois Curfman McInnes   if (n == PETSC_DECIDE) {n = N/b->size + ((N % b->size) > b->rank);}
163644cd7ae7SLois Curfman McInnes   b->m = m; B->m = m;
163744cd7ae7SLois Curfman McInnes   b->n = n; B->n = n;
163844cd7ae7SLois Curfman McInnes   b->N = N; B->N = N;
163944cd7ae7SLois Curfman McInnes   b->M = M; B->M = M;
16401eb62cbbSBarry Smith 
16411eb62cbbSBarry Smith   /* build local table of row and column ownerships */
164244cd7ae7SLois Curfman McInnes   b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners);
1643f09e8eb9SSatish Balay   PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIAIJ));
1644603f58a4SSatish Balay   b->cowners = b->rowners + b->size + 2;
1645ca161407SBarry Smith   ierr = MPI_Allgather(&m,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
164644cd7ae7SLois Curfman McInnes   b->rowners[0] = 0;
164744cd7ae7SLois Curfman McInnes   for ( i=2; i<=b->size; i++ ) {
164844cd7ae7SLois Curfman McInnes     b->rowners[i] += b->rowners[i-1];
16498a729477SBarry Smith   }
165044cd7ae7SLois Curfman McInnes   b->rstart = b->rowners[b->rank];
165144cd7ae7SLois Curfman McInnes   b->rend   = b->rowners[b->rank+1];
1652ca161407SBarry Smith   ierr = MPI_Allgather(&n,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
165344cd7ae7SLois Curfman McInnes   b->cowners[0] = 0;
165444cd7ae7SLois Curfman McInnes   for ( i=2; i<=b->size; i++ ) {
165544cd7ae7SLois Curfman McInnes     b->cowners[i] += b->cowners[i-1];
16568a729477SBarry Smith   }
165744cd7ae7SLois Curfman McInnes   b->cstart = b->cowners[b->rank];
165844cd7ae7SLois Curfman McInnes   b->cend   = b->cowners[b->rank+1];
16598a729477SBarry Smith 
16605ace5be8SLois Curfman McInnes   if (d_nz == PETSC_DEFAULT) d_nz = 5;
1661029af93fSBarry Smith   ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr);
166244cd7ae7SLois Curfman McInnes   PLogObjectParent(B,b->A);
16637b8455f0SLois Curfman McInnes   if (o_nz == PETSC_DEFAULT) o_nz = 0;
1664029af93fSBarry Smith   ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr);
166544cd7ae7SLois Curfman McInnes   PLogObjectParent(B,b->B);
16668a729477SBarry Smith 
16671eb62cbbSBarry Smith   /* build cache for off array entries formed */
166844cd7ae7SLois Curfman McInnes   ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr);
166990f02eecSBarry Smith   b->donotstash  = 0;
167044cd7ae7SLois Curfman McInnes   b->colmap      = 0;
167144cd7ae7SLois Curfman McInnes   b->garray      = 0;
167244cd7ae7SLois Curfman McInnes   b->roworiented = 1;
16738a729477SBarry Smith 
16741eb62cbbSBarry Smith   /* stuff used for matrix vector multiply */
167544cd7ae7SLois Curfman McInnes   b->lvec      = 0;
167644cd7ae7SLois Curfman McInnes   b->Mvctx     = 0;
16778a729477SBarry Smith 
16787a0afa10SBarry Smith   /* stuff for MatGetRow() */
167944cd7ae7SLois Curfman McInnes   b->rowindices   = 0;
168044cd7ae7SLois Curfman McInnes   b->rowvalues    = 0;
168144cd7ae7SLois Curfman McInnes   b->getrowactive = PETSC_FALSE;
16827a0afa10SBarry Smith 
168344cd7ae7SLois Curfman McInnes   *A = B;
16843a40ed3dSBarry Smith   PetscFunctionReturn(0);
1685d6dfbf8fSBarry Smith }
1686c74985f6SBarry Smith 
16875615d1e5SSatish Balay #undef __FUNC__
16885615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIAIJ"
16898f6be9afSLois Curfman McInnes int MatConvertSameType_MPIAIJ(Mat matin,Mat *newmat,int cpvalues)
1690d6dfbf8fSBarry Smith {
1691d6dfbf8fSBarry Smith   Mat        mat;
1692416022c9SBarry Smith   Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data;
1693a1b97e82SLois Curfman McInnes   int        ierr, len=0, flg;
1694d6dfbf8fSBarry Smith 
16953a40ed3dSBarry Smith   PetscFunctionBegin;
1696416022c9SBarry Smith   *newmat       = 0;
1697d4bb536fSBarry Smith   PetscHeaderCreate(mat,_p_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm,MatDestroy,MatView);
1698a5a9c739SBarry Smith   PLogObjectCreate(mat);
16990452661fSBarry Smith   mat->data       = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a);
1700416022c9SBarry Smith   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
170144a69424SLois Curfman McInnes   mat->destroy    = MatDestroy_MPIAIJ;
170244a69424SLois Curfman McInnes   mat->view       = MatView_MPIAIJ;
1703d6dfbf8fSBarry Smith   mat->factor     = matin->factor;
1704c456f294SBarry Smith   mat->assembled  = PETSC_TRUE;
1705d6dfbf8fSBarry Smith 
170644cd7ae7SLois Curfman McInnes   a->m = mat->m   = oldmat->m;
170744cd7ae7SLois Curfman McInnes   a->n = mat->n   = oldmat->n;
170844cd7ae7SLois Curfman McInnes   a->M = mat->M   = oldmat->M;
170944cd7ae7SLois Curfman McInnes   a->N = mat->N   = oldmat->N;
1710d6dfbf8fSBarry Smith 
1711416022c9SBarry Smith   a->rstart       = oldmat->rstart;
1712416022c9SBarry Smith   a->rend         = oldmat->rend;
1713416022c9SBarry Smith   a->cstart       = oldmat->cstart;
1714416022c9SBarry Smith   a->cend         = oldmat->cend;
171517699dbbSLois Curfman McInnes   a->size         = oldmat->size;
171617699dbbSLois Curfman McInnes   a->rank         = oldmat->rank;
171747794344SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1718bcd2baecSBarry Smith   a->rowvalues    = 0;
1719bcd2baecSBarry Smith   a->getrowactive = PETSC_FALSE;
1720d6dfbf8fSBarry Smith 
1721603f58a4SSatish Balay   a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners);
1722f09e8eb9SSatish Balay   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIAIJ));
1723603f58a4SSatish Balay   a->cowners = a->rowners + a->size + 2;
1724603f58a4SSatish Balay   PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int));
1725416022c9SBarry Smith   ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr);
17262ee70a88SLois Curfman McInnes   if (oldmat->colmap) {
17270452661fSBarry Smith     a->colmap = (int *) PetscMalloc((a->N)*sizeof(int));CHKPTRQ(a->colmap);
1728416022c9SBarry Smith     PLogObjectMemory(mat,(a->N)*sizeof(int));
1729416022c9SBarry Smith     PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int));
1730416022c9SBarry Smith   } else a->colmap = 0;
17313f41c07dSBarry Smith   if (oldmat->garray) {
17323f41c07dSBarry Smith     len = ((Mat_SeqAIJ *) (oldmat->B->data))->n;
17333f41c07dSBarry Smith     a->garray = (int *) PetscMalloc((len+1)*sizeof(int)); CHKPTRQ(a->garray);
1734464493b3SBarry Smith     PLogObjectMemory(mat,len*sizeof(int));
17353f41c07dSBarry Smith     if (len) PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));
1736416022c9SBarry Smith   } else a->garray = 0;
1737d6dfbf8fSBarry Smith 
1738416022c9SBarry Smith   ierr =  VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr);
1739416022c9SBarry Smith   PLogObjectParent(mat,a->lvec);
1740a56f8943SBarry Smith   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr);
1741416022c9SBarry Smith   PLogObjectParent(mat,a->Mvctx);
1742416022c9SBarry Smith   ierr =  MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr);
1743416022c9SBarry Smith   PLogObjectParent(mat,a->A);
1744416022c9SBarry Smith   ierr =  MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr);
1745416022c9SBarry Smith   PLogObjectParent(mat,a->B);
17465dd7a6c7SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr);
174725cdf11fSBarry Smith   if (flg) {
1748682d7d0cSBarry Smith     ierr = MatPrintHelp(mat); CHKERRQ(ierr);
1749682d7d0cSBarry Smith   }
17508a729477SBarry Smith   *newmat = mat;
17513a40ed3dSBarry Smith   PetscFunctionReturn(0);
17528a729477SBarry Smith }
1753416022c9SBarry Smith 
175477c4ece6SBarry Smith #include "sys.h"
1755416022c9SBarry Smith 
17565615d1e5SSatish Balay #undef __FUNC__
17575615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIAIJ"
175819bcc07fSBarry Smith int MatLoad_MPIAIJ(Viewer viewer,MatType type,Mat *newmat)
1759416022c9SBarry Smith {
1760d65a2f8fSBarry Smith   Mat          A;
1761d65a2f8fSBarry Smith   Scalar       *vals,*svals;
176219bcc07fSBarry Smith   MPI_Comm     comm = ((PetscObject)viewer)->comm;
1763416022c9SBarry Smith   MPI_Status   status;
17643a40ed3dSBarry Smith   int          i, nz, ierr, j,rstart, rend, fd;
176517699dbbSLois Curfman McInnes   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols;
1766d65a2f8fSBarry Smith   int          *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols;
176719bcc07fSBarry Smith   int          tag = ((PetscObject)viewer)->tag;
1768416022c9SBarry Smith 
17693a40ed3dSBarry Smith   PetscFunctionBegin;
177017699dbbSLois Curfman McInnes   MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank);
177117699dbbSLois Curfman McInnes   if (!rank) {
177290ace30eSBarry Smith     ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
17730752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr);
1774a8c6a408SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object");
1775d64ed03dSBarry Smith     if (header[3] < 0) {
1776a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix in special format on disk, cannot load as MPIAIJ");
1777d64ed03dSBarry Smith     }
17786c5fab8fSBarry Smith   }
17796c5fab8fSBarry Smith 
1780d64ed03dSBarry Smith 
1781ca161407SBarry Smith   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
1782416022c9SBarry Smith   M = header[1]; N = header[2];
1783416022c9SBarry Smith   /* determine ownership of all rows */
178417699dbbSLois Curfman McInnes   m = M/size + ((M % size) > rank);
17850452661fSBarry Smith   rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners);
1786ca161407SBarry Smith   ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
1787416022c9SBarry Smith   rowners[0] = 0;
178817699dbbSLois Curfman McInnes   for ( i=2; i<=size; i++ ) {
1789416022c9SBarry Smith     rowners[i] += rowners[i-1];
1790416022c9SBarry Smith   }
179117699dbbSLois Curfman McInnes   rstart = rowners[rank];
179217699dbbSLois Curfman McInnes   rend   = rowners[rank+1];
1793416022c9SBarry Smith 
1794416022c9SBarry Smith   /* distribute row lengths to all processors */
17950452661fSBarry Smith   ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens);
1796416022c9SBarry Smith   offlens = ourlens + (rend-rstart);
179717699dbbSLois Curfman McInnes   if (!rank) {
17980452661fSBarry Smith     rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths);
17990752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr);
18000452661fSBarry Smith     sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts);
180117699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i];
1802ca161407SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr);
18030452661fSBarry Smith     PetscFree(sndcounts);
18043a40ed3dSBarry Smith   } else {
1805ca161407SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);CHKERRQ(ierr);
1806416022c9SBarry Smith   }
1807416022c9SBarry Smith 
180817699dbbSLois Curfman McInnes   if (!rank) {
1809416022c9SBarry Smith     /* calculate the number of nonzeros on each processor */
18100452661fSBarry Smith     procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz);
1811cddf8d76SBarry Smith     PetscMemzero(procsnz,size*sizeof(int));
181217699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) {
1813416022c9SBarry Smith       for ( j=rowners[i]; j< rowners[i+1]; j++ ) {
1814416022c9SBarry Smith         procsnz[i] += rowlengths[j];
1815416022c9SBarry Smith       }
1816416022c9SBarry Smith     }
18170452661fSBarry Smith     PetscFree(rowlengths);
1818416022c9SBarry Smith 
1819416022c9SBarry Smith     /* determine max buffer needed and allocate it */
1820416022c9SBarry Smith     maxnz = 0;
182117699dbbSLois Curfman McInnes     for ( i=0; i<size; i++ ) {
18220452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
1823416022c9SBarry Smith     }
18240452661fSBarry Smith     cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols);
1825416022c9SBarry Smith 
1826416022c9SBarry Smith     /* read in my part of the matrix column indices  */
1827416022c9SBarry Smith     nz     = procsnz[0];
18280452661fSBarry Smith     mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
18290752156aSBarry Smith     ierr   = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr);
1830d65a2f8fSBarry Smith 
1831d65a2f8fSBarry Smith     /* read in every one elses and ship off */
183217699dbbSLois Curfman McInnes     for ( i=1; i<size; i++ ) {
1833d65a2f8fSBarry Smith       nz   = procsnz[i];
18340752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr);
1835ca161407SBarry Smith       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
1836d65a2f8fSBarry Smith     }
18370452661fSBarry Smith     PetscFree(cols);
18383a40ed3dSBarry Smith   } else {
1839416022c9SBarry Smith     /* determine buffer space needed for message */
1840416022c9SBarry Smith     nz = 0;
1841416022c9SBarry Smith     for ( i=0; i<m; i++ ) {
1842416022c9SBarry Smith       nz += ourlens[i];
1843416022c9SBarry Smith     }
18440452661fSBarry Smith     mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols);
1845416022c9SBarry Smith 
1846416022c9SBarry Smith     /* receive message of column indices*/
1847ca161407SBarry Smith     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
1848ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
1849a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
1850416022c9SBarry Smith   }
1851416022c9SBarry Smith 
1852416022c9SBarry Smith   /* loop over local rows, determining number of off diagonal entries */
1853cddf8d76SBarry Smith   PetscMemzero(offlens,m*sizeof(int));
1854416022c9SBarry Smith   jj = 0;
1855416022c9SBarry Smith   for ( i=0; i<m; i++ ) {
1856416022c9SBarry Smith     for ( j=0; j<ourlens[i]; j++ ) {
1857d65a2f8fSBarry Smith       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
1858416022c9SBarry Smith       jj++;
1859416022c9SBarry Smith     }
1860416022c9SBarry Smith   }
1861d65a2f8fSBarry Smith 
1862d65a2f8fSBarry Smith   /* create our matrix */
1863416022c9SBarry Smith   for ( i=0; i<m; i++ ) {
1864416022c9SBarry Smith     ourlens[i] -= offlens[i];
1865416022c9SBarry Smith   }
1866d65a2f8fSBarry Smith   ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr);
1867d65a2f8fSBarry Smith   A = *newmat;
18686d4a8577SBarry Smith   MatSetOption(A,MAT_COLUMNS_SORTED);
1869d65a2f8fSBarry Smith   for ( i=0; i<m; i++ ) {
1870d65a2f8fSBarry Smith     ourlens[i] += offlens[i];
1871d65a2f8fSBarry Smith   }
1872416022c9SBarry Smith 
187317699dbbSLois Curfman McInnes   if (!rank) {
18740452661fSBarry Smith     vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals);
1875416022c9SBarry Smith 
1876416022c9SBarry Smith     /* read in my part of the matrix numerical values  */
1877416022c9SBarry Smith     nz = procsnz[0];
18780752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
1879d65a2f8fSBarry Smith 
1880d65a2f8fSBarry Smith     /* insert into matrix */
1881d65a2f8fSBarry Smith     jj      = rstart;
1882d65a2f8fSBarry Smith     smycols = mycols;
1883d65a2f8fSBarry Smith     svals   = vals;
1884d65a2f8fSBarry Smith     for ( i=0; i<m; i++ ) {
1885d65a2f8fSBarry Smith       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1886d65a2f8fSBarry Smith       smycols += ourlens[i];
1887d65a2f8fSBarry Smith       svals   += ourlens[i];
1888d65a2f8fSBarry Smith       jj++;
1889416022c9SBarry Smith     }
1890416022c9SBarry Smith 
1891d65a2f8fSBarry Smith     /* read in other processors and ship out */
189217699dbbSLois Curfman McInnes     for ( i=1; i<size; i++ ) {
1893416022c9SBarry Smith       nz   = procsnz[i];
18940752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
1895ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
1896416022c9SBarry Smith     }
18970452661fSBarry Smith     PetscFree(procsnz);
18983a40ed3dSBarry Smith   } else {
1899d65a2f8fSBarry Smith     /* receive numeric values */
19000452661fSBarry Smith     vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals);
1901416022c9SBarry Smith 
1902d65a2f8fSBarry Smith     /* receive message of values*/
1903ca161407SBarry Smith     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
1904ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
1905a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
1906d65a2f8fSBarry Smith 
1907d65a2f8fSBarry Smith     /* insert into matrix */
1908d65a2f8fSBarry Smith     jj      = rstart;
1909d65a2f8fSBarry Smith     smycols = mycols;
1910d65a2f8fSBarry Smith     svals   = vals;
1911d65a2f8fSBarry Smith     for ( i=0; i<m; i++ ) {
1912d65a2f8fSBarry Smith       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
1913d65a2f8fSBarry Smith       smycols += ourlens[i];
1914d65a2f8fSBarry Smith       svals   += ourlens[i];
1915d65a2f8fSBarry Smith       jj++;
1916d65a2f8fSBarry Smith     }
1917d65a2f8fSBarry Smith   }
19180452661fSBarry Smith   PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners);
1919d65a2f8fSBarry Smith 
19206d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
19216d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
19223a40ed3dSBarry Smith   PetscFunctionReturn(0);
1923416022c9SBarry Smith }
1924a0ff6018SBarry Smith 
192529da9460SBarry Smith #undef __FUNC__
192629da9460SBarry Smith #define __FUNC__ "MatGetSubMatrix_MPIAIJ"
1927a0ff6018SBarry Smith /*
192829da9460SBarry Smith     Not great since it makes two copies of the submatrix, first an SeqAIJ
192929da9460SBarry Smith   in local and then by concatenating the local matrices the end result.
193029da9460SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIAIJ()
1931a0ff6018SBarry Smith */
1932*6a6a5d1dSBarry Smith int MatGetSubMatrix_MPIAIJ(Mat mat,IS isrow,IS iscol,int csize,MatGetSubMatrixCall call,Mat *newmat)
1933a0ff6018SBarry Smith {
193400e6dbe6SBarry Smith   int        ierr, i, m,n,rstart,row,rend,nz,*cwork,size,rank,j;
1935a0ff6018SBarry Smith   Mat        *local,M;
193600e6dbe6SBarry Smith   Scalar     *vwork,*aa;
193700e6dbe6SBarry Smith   MPI_Comm   comm = mat->comm;
193800e6dbe6SBarry Smith   Mat_SeqAIJ *aij;
193900e6dbe6SBarry Smith   int        *ii, *jj,nlocal,*dlens,*olens,dlen,olen,jend;
1940a0ff6018SBarry Smith 
1941a0ff6018SBarry Smith   PetscFunctionBegin;
194200e6dbe6SBarry Smith   MPI_Comm_rank(comm,&rank);
194300e6dbe6SBarry Smith   MPI_Comm_size(comm,&size);
194400e6dbe6SBarry Smith 
1945a0ff6018SBarry Smith   ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr);
1946a0ff6018SBarry Smith 
1947a0ff6018SBarry Smith   /*
1948a0ff6018SBarry Smith       m - number of local rows
1949a0ff6018SBarry Smith       n - number of columns (same on all processors)
1950a0ff6018SBarry Smith       rstart - first row in new global matrix generated
1951a0ff6018SBarry Smith   */
1952a0ff6018SBarry Smith   ierr = MatGetSize(*local,&m,&n);CHKERRQ(ierr);
1953a0ff6018SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
195400e6dbe6SBarry Smith     aij = (Mat_SeqAIJ *) (*local)->data;
1955a8c6a408SBarry Smith     if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,1,"No support for index shifted matrix");
195600e6dbe6SBarry Smith     ii  = aij->i;
195700e6dbe6SBarry Smith     jj  = aij->j;
195800e6dbe6SBarry Smith 
1959a0ff6018SBarry Smith     /*
196000e6dbe6SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
196100e6dbe6SBarry Smith         portions of the matrix in order to do correct preallocation
1962a0ff6018SBarry Smith     */
196300e6dbe6SBarry Smith 
196400e6dbe6SBarry Smith     /* first get start and end of "diagonal" columns */
1965*6a6a5d1dSBarry Smith     if (csize == PETSC_DECIDE) {
196600e6dbe6SBarry Smith       nlocal = n/size + ((n % size) > rank);
1967*6a6a5d1dSBarry Smith     } else {
1968*6a6a5d1dSBarry Smith       nlocal = csize;
1969*6a6a5d1dSBarry Smith     }
1970ca161407SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
197100e6dbe6SBarry Smith     rstart = rend - nlocal;
1972*6a6a5d1dSBarry Smith     if (rank == size - 1 && rend != n) {
1973*6a6a5d1dSBarry Smith       SETERRQ(1,1,"Local column sizes do not add up to total number of columns");
1974*6a6a5d1dSBarry Smith     }
197500e6dbe6SBarry Smith 
197600e6dbe6SBarry Smith     /* next, compute all the lengths */
197700e6dbe6SBarry Smith     dlens = (int *) PetscMalloc( (2*m+1)*sizeof(int) );CHKPTRQ(dlens);
197800e6dbe6SBarry Smith     olens = dlens + m;
197900e6dbe6SBarry Smith     for ( i=0; i<m; i++ ) {
198000e6dbe6SBarry Smith       jend = ii[i+1] - ii[i];
198100e6dbe6SBarry Smith       olen = 0;
198200e6dbe6SBarry Smith       dlen = 0;
198300e6dbe6SBarry Smith       for ( j=0; j<jend; j++ ) {
198400e6dbe6SBarry Smith         if ( *jj < rstart || *jj >= rend) olen++;
198500e6dbe6SBarry Smith         else dlen++;
198600e6dbe6SBarry Smith         jj++;
198700e6dbe6SBarry Smith       }
198800e6dbe6SBarry Smith       olens[i] = olen;
198900e6dbe6SBarry Smith       dlens[i] = dlen;
199000e6dbe6SBarry Smith     }
199100e6dbe6SBarry Smith     ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,PETSC_DECIDE,n,0,dlens,0,olens,&M);CHKERRQ(ierr);
199200e6dbe6SBarry Smith     PetscFree(dlens);
1993a0ff6018SBarry Smith   } else {
1994a0ff6018SBarry Smith     int ml,nl;
1995a0ff6018SBarry Smith 
1996a0ff6018SBarry Smith     M = *newmat;
1997a0ff6018SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
1998a8c6a408SBarry Smith     if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,1,"Previous matrix must be same size/layout as request");
1999a0ff6018SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
2000a0ff6018SBarry Smith   }
2001a0ff6018SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend); CHKERRQ(ierr);
200200e6dbe6SBarry Smith   aij = (Mat_SeqAIJ *) (*local)->data;
2003a8c6a408SBarry Smith   if (aij->indexshift) SETERRQ(PETSC_ERR_SUP,1,"No support for index shifted matrix");
200400e6dbe6SBarry Smith   ii  = aij->i;
200500e6dbe6SBarry Smith   jj  = aij->j;
200600e6dbe6SBarry Smith   aa  = aij->a;
2007a0ff6018SBarry Smith   for (i=0; i<m; i++) {
2008a0ff6018SBarry Smith     row   = rstart + i;
200900e6dbe6SBarry Smith     nz    = ii[i+1] - ii[i];
201000e6dbe6SBarry Smith     cwork = jj;     jj += nz;
201100e6dbe6SBarry Smith     vwork = aa;     aa += nz;
20128c638d02SBarry Smith     ierr = MatSetValues_MPIAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES); CHKERRQ(ierr);
2013a0ff6018SBarry Smith   }
2014a0ff6018SBarry Smith 
2015a0ff6018SBarry Smith   ierr = MatDestroyMatrices(1,&local);CHKERRQ(ierr);
2016a0ff6018SBarry Smith   ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
2017a0ff6018SBarry Smith   ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
2018a0ff6018SBarry Smith   *newmat = M;
2019a0ff6018SBarry Smith   PetscFunctionReturn(0);
2020a0ff6018SBarry Smith }
2021