1cb512458SBarry Smith #ifndef lint 2*6d84be18SBarry Smith static char vcid[] = "$Id: mpiaij.c,v 1.129 1996/02/28 00:12:20 bsmith Exp bsmith $"; 3cb512458SBarry Smith #endif 48a729477SBarry Smith 51eb62cbbSBarry Smith #include "mpiaij.h" 68a729477SBarry Smith #include "vec/vecimpl.h" 7d6dfbf8fSBarry Smith #include "inline/spops.h" 88a729477SBarry Smith 99e25ed09SBarry Smith /* local utility routine that creates a mapping from the global column 109e25ed09SBarry Smith number to the local number in the off-diagonal part of the local 119e25ed09SBarry Smith storage of the matrix. This is done in a non scable way since the 129e25ed09SBarry Smith length of colmap equals the global matrix length. 139e25ed09SBarry Smith */ 14b7c46309SBarry Smith static int CreateColmap_Private(Mat mat) 159e25ed09SBarry Smith { 1644a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 17ec8511deSBarry Smith Mat_SeqAIJ *B = (Mat_SeqAIJ*) aij->B->data; 18416022c9SBarry Smith int n = B->n,i,shift = B->indexshift; 19dbb450caSBarry Smith 200452661fSBarry Smith aij->colmap = (int *) PetscMalloc(aij->N*sizeof(int));CHKPTRQ(aij->colmap); 21464493b3SBarry Smith PLogObjectMemory(mat,aij->N*sizeof(int)); 22cddf8d76SBarry Smith PetscMemzero(aij->colmap,aij->N*sizeof(int)); 23dbb450caSBarry Smith for ( i=0; i<n; i++ ) aij->colmap[aij->garray[i]] = i-shift; 249e25ed09SBarry Smith return 0; 259e25ed09SBarry Smith } 269e25ed09SBarry Smith 272493cbb0SBarry Smith extern int DisAssemble_MPIAIJ(Mat); 282493cbb0SBarry Smith 2951c98ccdSLois Curfman McInnes static int MatGetReordering_MPIAIJ(Mat mat,MatOrdering type,IS *rperm,IS *cperm) 30299609e3SLois Curfman McInnes { 31299609e3SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 32299609e3SLois Curfman McInnes int ierr; 3317699dbbSLois Curfman McInnes if (aij->size == 1) { 3451c98ccdSLois Curfman McInnes ierr = MatGetReordering(aij->A,type,rperm,cperm); CHKERRQ(ierr); 3548d91487SBarry Smith } else SETERRQ(1,"MatGetReordering_MPIAIJ:not supported in parallel"); 36299609e3SLois Curfman McInnes return 0; 37299609e3SLois Curfman McInnes } 38299609e3SLois Curfman McInnes 394b0e389bSBarry Smith static int MatSetValues_MPIAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 408a729477SBarry Smith { 4144a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 42dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ*) aij->A->data; 434b0e389bSBarry Smith Scalar value; 441eb62cbbSBarry Smith int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 451eb62cbbSBarry Smith int cstart = aij->cstart, cend = aij->cend,row,col; 464b0e389bSBarry Smith int shift = C->indexshift,roworiented = aij->roworiented; 478a729477SBarry Smith 4864119d58SLois Curfman McInnes if (aij->insertmode != NOT_SET_VALUES && aij->insertmode != addv) { 4948d91487SBarry Smith SETERRQ(1,"MatSetValues_MPIAIJ:Cannot mix inserts and adds"); 508a729477SBarry Smith } 511eb62cbbSBarry Smith aij->insertmode = addv; 528a729477SBarry Smith for ( i=0; i<m; i++ ) { 534b0e389bSBarry Smith if (im[i] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative row"); 544b0e389bSBarry Smith if (im[i] >= aij->M) SETERRQ(1,"MatSetValues_MPIAIJ:Row too large"); 554b0e389bSBarry Smith if (im[i] >= rstart && im[i] < rend) { 564b0e389bSBarry Smith row = im[i] - rstart; 571eb62cbbSBarry Smith for ( j=0; j<n; j++ ) { 584b0e389bSBarry Smith if (in[j] < 0) SETERRQ(1,"MatSetValues_MPIAIJ:Negative column"); 594b0e389bSBarry Smith if (in[j] >= aij->N) SETERRQ(1,"MatSetValues_MPIAIJ:Col too large"); 604b0e389bSBarry Smith if (in[j] >= cstart && in[j] < cend){ 614b0e389bSBarry Smith col = in[j] - cstart; 624b0e389bSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 634b0e389bSBarry Smith ierr = MatSetValues(aij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); 641eb62cbbSBarry Smith } 651eb62cbbSBarry Smith else { 66227d817aSBarry Smith if (mat->was_assembled) { 67b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 684b0e389bSBarry Smith col = aij->colmap[in[j]] + shift; 69ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 702493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 714b0e389bSBarry Smith col = in[j]; 72d6dfbf8fSBarry Smith } 739e25ed09SBarry Smith } 744b0e389bSBarry Smith else col = in[j]; 754b0e389bSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 764b0e389bSBarry Smith ierr = MatSetValues(aij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); 771eb62cbbSBarry Smith } 781eb62cbbSBarry Smith } 791eb62cbbSBarry Smith } 801eb62cbbSBarry Smith else { 814b0e389bSBarry Smith if (roworiented) { 824b0e389bSBarry Smith ierr = StashValues_Private(&aij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 834b0e389bSBarry Smith } 844b0e389bSBarry Smith else { 854b0e389bSBarry Smith row = im[i]; 864b0e389bSBarry Smith for ( j=0; j<n; j++ ) { 874b0e389bSBarry Smith ierr = StashValues_Private(&aij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 884b0e389bSBarry Smith } 894b0e389bSBarry Smith } 901eb62cbbSBarry Smith } 918a729477SBarry Smith } 928a729477SBarry Smith return 0; 938a729477SBarry Smith } 948a729477SBarry Smith 95b49de8d1SLois Curfman McInnes static int MatGetValues_MPIAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 96b49de8d1SLois Curfman McInnes { 97b49de8d1SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 98b49de8d1SLois Curfman McInnes Mat_SeqAIJ *C = (Mat_SeqAIJ*) aij->A->data; 99b49de8d1SLois Curfman McInnes int ierr,i,j, rstart = aij->rstart, rend = aij->rend; 100b49de8d1SLois Curfman McInnes int cstart = aij->cstart, cend = aij->cend,row,col; 101b49de8d1SLois Curfman McInnes int shift = C->indexshift; 102b49de8d1SLois Curfman McInnes 103b49de8d1SLois Curfman McInnes for ( i=0; i<m; i++ ) { 104b49de8d1SLois Curfman McInnes if (idxm[i] < 0) SETERRQ(1,"MatGetValues_MPIAIJ:Negative row"); 105b49de8d1SLois Curfman McInnes if (idxm[i] >= aij->M) SETERRQ(1,"MatGetValues_MPIAIJ:Row too large"); 106b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 107b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 108b49de8d1SLois Curfman McInnes for ( j=0; j<n; j++ ) { 109b49de8d1SLois Curfman McInnes if (idxn[j] < 0) SETERRQ(1,"MatGetValues_MPIAIJ:Negative column"); 110b49de8d1SLois Curfman McInnes if (idxn[j] >= aij->N) SETERRQ(1,"MatGetValues_MPIAIJ:Col too large"); 111b49de8d1SLois Curfman McInnes if (idxn[j] >= cstart && idxn[j] < cend){ 112b49de8d1SLois Curfman McInnes col = idxn[j] - cstart; 113b49de8d1SLois Curfman McInnes ierr = MatGetValues(aij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 114b49de8d1SLois Curfman McInnes } 115b49de8d1SLois Curfman McInnes else { 116b49de8d1SLois Curfman McInnes col = aij->colmap[idxn[j]] + shift; 117b49de8d1SLois Curfman McInnes ierr = MatGetValues(aij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 118b49de8d1SLois Curfman McInnes } 119b49de8d1SLois Curfman McInnes } 120b49de8d1SLois Curfman McInnes } 121b49de8d1SLois Curfman McInnes else { 122b49de8d1SLois Curfman McInnes SETERRQ(1,"MatGetValues_MPIAIJ:Only local values currently supported"); 123b49de8d1SLois Curfman McInnes } 124b49de8d1SLois Curfman McInnes } 125b49de8d1SLois Curfman McInnes return 0; 126b49de8d1SLois Curfman McInnes } 127b49de8d1SLois Curfman McInnes 128fc76ce87SLois Curfman McInnes static int MatAssemblyBegin_MPIAIJ(Mat mat,MatAssemblyType mode) 1298a729477SBarry Smith { 13044a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 131d6dfbf8fSBarry Smith MPI_Comm comm = mat->comm; 13217699dbbSLois Curfman McInnes int size = aij->size, *owners = aij->rowners; 13317699dbbSLois Curfman McInnes int rank = aij->rank,tag = mat->tag, *owner,*starts,count,ierr; 1341eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 1356abc6512SBarry Smith int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 1361eb62cbbSBarry Smith InsertMode addv; 1371eb62cbbSBarry Smith Scalar *rvalues,*svalues; 1381eb62cbbSBarry Smith 1391eb62cbbSBarry Smith /* make sure all processors are either in INSERTMODE or ADDMODE */ 140d65a2f8fSBarry Smith MPI_Allreduce(&aij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 141dbb450caSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 142bbb6d6a8SBarry Smith SETERRQ(1,"MatAssemblyBegin_MPIAIJ:Some processors inserted others added"); 1431eb62cbbSBarry Smith } 1441eb62cbbSBarry Smith aij->insertmode = addv; /* in case this processor had no cache */ 1451eb62cbbSBarry Smith 1461eb62cbbSBarry Smith /* first count number of contributors to each processor */ 1470452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 148cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 1490452661fSBarry Smith owner = (int *) PetscMalloc( (aij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 1501eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1511eb62cbbSBarry Smith idx = aij->stash.idx[i]; 15217699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 1531eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 1541eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; break; 1558a729477SBarry Smith } 1568a729477SBarry Smith } 1578a729477SBarry Smith } 15817699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 1591eb62cbbSBarry Smith 1601eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 1610452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 16217699dbbSLois Curfman McInnes MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm); 16317699dbbSLois Curfman McInnes nreceives = work[rank]; 16417699dbbSLois Curfman McInnes MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 16517699dbbSLois Curfman McInnes nmax = work[rank]; 1660452661fSBarry Smith PetscFree(work); 1671eb62cbbSBarry Smith 1681eb62cbbSBarry Smith /* post receives: 1691eb62cbbSBarry Smith 1) each message will consist of ordered pairs 1701eb62cbbSBarry Smith (global index,value) we store the global index as a double 171d6dfbf8fSBarry Smith to simplify the message passing. 1721eb62cbbSBarry Smith 2) since we don't know how long each individual message is we 1731eb62cbbSBarry Smith allocate the largest needed buffer for each receive. Potentially 1741eb62cbbSBarry Smith this is a lot of wasted space. 1751eb62cbbSBarry Smith 1761eb62cbbSBarry Smith 1771eb62cbbSBarry Smith This could be done better. 1781eb62cbbSBarry Smith */ 1790452661fSBarry Smith rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 18078b31e54SBarry Smith CHKPTRQ(rvalues); 1810452661fSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request)); 18278b31e54SBarry Smith CHKPTRQ(recv_waits); 1831eb62cbbSBarry Smith for ( i=0; i<nreceives; i++ ) { 184416022c9SBarry Smith MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 1851eb62cbbSBarry Smith comm,recv_waits+i); 1861eb62cbbSBarry Smith } 1871eb62cbbSBarry Smith 1881eb62cbbSBarry Smith /* do sends: 1891eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 1901eb62cbbSBarry Smith the ith processor 1911eb62cbbSBarry Smith */ 1920452661fSBarry Smith svalues = (Scalar *) PetscMalloc(3*(aij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 1930452661fSBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 19478b31e54SBarry Smith CHKPTRQ(send_waits); 1950452661fSBarry Smith starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 1961eb62cbbSBarry Smith starts[0] = 0; 19717699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1981eb62cbbSBarry Smith for ( i=0; i<aij->stash.n; i++ ) { 1991eb62cbbSBarry Smith svalues[3*starts[owner[i]]] = (Scalar) aij->stash.idx[i]; 2001eb62cbbSBarry Smith svalues[3*starts[owner[i]]+1] = (Scalar) aij->stash.idy[i]; 2011eb62cbbSBarry Smith svalues[3*(starts[owner[i]]++)+2] = aij->stash.array[i]; 2021eb62cbbSBarry Smith } 2030452661fSBarry Smith PetscFree(owner); 2041eb62cbbSBarry Smith starts[0] = 0; 20517699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 2061eb62cbbSBarry Smith count = 0; 20717699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 2081eb62cbbSBarry Smith if (procs[i]) { 209416022c9SBarry Smith MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag, 2101eb62cbbSBarry Smith comm,send_waits+count++); 2111eb62cbbSBarry Smith } 2121eb62cbbSBarry Smith } 2130452661fSBarry Smith PetscFree(starts); PetscFree(nprocs); 2141eb62cbbSBarry Smith 2151eb62cbbSBarry Smith /* Free cache space */ 2162191d07cSBarry Smith PLogInfo(0,"[%d]MatAssemblyBegin_MPIAIJ:Number of off processor values %d\n",rank,aij->stash.n); 21778b31e54SBarry Smith ierr = StashDestroy_Private(&aij->stash); CHKERRQ(ierr); 2181eb62cbbSBarry Smith 2191eb62cbbSBarry Smith aij->svalues = svalues; aij->rvalues = rvalues; 2201eb62cbbSBarry Smith aij->nsends = nsends; aij->nrecvs = nreceives; 2211eb62cbbSBarry Smith aij->send_waits = send_waits; aij->recv_waits = recv_waits; 2221eb62cbbSBarry Smith aij->rmax = nmax; 2231eb62cbbSBarry Smith 2241eb62cbbSBarry Smith return 0; 2251eb62cbbSBarry Smith } 22644a69424SLois Curfman McInnes extern int MatSetUpMultiply_MPIAIJ(Mat); 2271eb62cbbSBarry Smith 228fc76ce87SLois Curfman McInnes static int MatAssemblyEnd_MPIAIJ(Mat mat,MatAssemblyType mode) 2291eb62cbbSBarry Smith { 23044a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 231dbb450caSBarry Smith Mat_SeqAIJ *C = (Mat_SeqAIJ *) aij->A->data; 2321eb62cbbSBarry Smith MPI_Status *send_status,recv_status; 233416022c9SBarry Smith int imdex,nrecvs = aij->nrecvs, count = nrecvs, i, n, ierr; 234416022c9SBarry Smith int row,col,other_disassembled,shift = C->indexshift; 2351eb62cbbSBarry Smith Scalar *values,val; 2361eb62cbbSBarry Smith InsertMode addv = aij->insertmode; 2371eb62cbbSBarry Smith 2381eb62cbbSBarry Smith /* wait on receives */ 2391eb62cbbSBarry Smith while (count) { 240d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,aij->recv_waits,&imdex,&recv_status); 2411eb62cbbSBarry Smith /* unpack receives into our local space */ 242d6dfbf8fSBarry Smith values = aij->rvalues + 3*imdex*aij->rmax; 243c60448a5SBarry Smith MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 2441eb62cbbSBarry Smith n = n/3; 2451eb62cbbSBarry Smith for ( i=0; i<n; i++ ) { 246227d817aSBarry Smith row = (int) PetscReal(values[3*i]) - aij->rstart; 247227d817aSBarry Smith col = (int) PetscReal(values[3*i+1]); 2481eb62cbbSBarry Smith val = values[3*i+2]; 2491eb62cbbSBarry Smith if (col >= aij->cstart && col < aij->cend) { 2501eb62cbbSBarry Smith col -= aij->cstart; 2511eb62cbbSBarry Smith MatSetValues(aij->A,1,&row,1,&col,&val,addv); 2521eb62cbbSBarry Smith } 2531eb62cbbSBarry Smith else { 254227d817aSBarry Smith if (mat->was_assembled) { 255b7c46309SBarry Smith if (!aij->colmap) {ierr = CreateColmap_Private(mat);CHKERRQ(ierr);} 256dbb450caSBarry Smith col = aij->colmap[col] + shift; 257ec8511deSBarry Smith if (col < 0 && !((Mat_SeqAIJ*)(aij->A->data))->nonew) { 2582493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 259227d817aSBarry Smith col = (int) PetscReal(values[3*i+1]); 260d6dfbf8fSBarry Smith } 2619e25ed09SBarry Smith } 2621eb62cbbSBarry Smith MatSetValues(aij->B,1,&row,1,&col,&val,addv); 2631eb62cbbSBarry Smith } 2641eb62cbbSBarry Smith } 2651eb62cbbSBarry Smith count--; 2661eb62cbbSBarry Smith } 2670452661fSBarry Smith PetscFree(aij->recv_waits); PetscFree(aij->rvalues); 2681eb62cbbSBarry Smith 2691eb62cbbSBarry Smith /* wait on sends */ 2701eb62cbbSBarry Smith if (aij->nsends) { 2710452661fSBarry Smith send_status = (MPI_Status *) PetscMalloc(aij->nsends*sizeof(MPI_Status)); 27278b31e54SBarry Smith CHKPTRQ(send_status); 2731eb62cbbSBarry Smith MPI_Waitall(aij->nsends,aij->send_waits,send_status); 2740452661fSBarry Smith PetscFree(send_status); 2751eb62cbbSBarry Smith } 2760452661fSBarry Smith PetscFree(aij->send_waits); PetscFree(aij->svalues); 2771eb62cbbSBarry Smith 27864119d58SLois Curfman McInnes aij->insertmode = NOT_SET_VALUES; 27978b31e54SBarry Smith ierr = MatAssemblyBegin(aij->A,mode); CHKERRQ(ierr); 28078b31e54SBarry Smith ierr = MatAssemblyEnd(aij->A,mode); CHKERRQ(ierr); 2811eb62cbbSBarry Smith 2822493cbb0SBarry Smith /* determine if any processor has disassembled, if so we must 2832493cbb0SBarry Smith also disassemble ourselfs, in order that we may reassemble. */ 284227d817aSBarry Smith MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm); 285227d817aSBarry Smith if (mat->was_assembled && !other_disassembled) { 2862493cbb0SBarry Smith ierr = DisAssemble_MPIAIJ(mat); CHKERRQ(ierr); 2872493cbb0SBarry Smith } 2882493cbb0SBarry Smith 289227d817aSBarry Smith if (!mat->was_assembled && mode == FINAL_ASSEMBLY) { 29078b31e54SBarry Smith ierr = MatSetUpMultiply_MPIAIJ(mat); CHKERRQ(ierr); 2915e42470aSBarry Smith } 29278b31e54SBarry Smith ierr = MatAssemblyBegin(aij->B,mode); CHKERRQ(ierr); 29378b31e54SBarry Smith ierr = MatAssemblyEnd(aij->B,mode); CHKERRQ(ierr); 2945e42470aSBarry Smith 2957a0afa10SBarry Smith if (aij->rowvalues) {PetscFree(aij->rowvalues); aij->rowvalues = 0;} 2968a729477SBarry Smith return 0; 2978a729477SBarry Smith } 2988a729477SBarry Smith 2992ee70a88SLois Curfman McInnes static int MatZeroEntries_MPIAIJ(Mat A) 3001eb62cbbSBarry Smith { 30144a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 302dbd7a890SLois Curfman McInnes int ierr; 30378b31e54SBarry Smith ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 30478b31e54SBarry Smith ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 3051eb62cbbSBarry Smith return 0; 3061eb62cbbSBarry Smith } 3071eb62cbbSBarry Smith 3081eb62cbbSBarry Smith /* the code does not do the diagonal entries correctly unless the 3091eb62cbbSBarry Smith matrix is square and the column and row owerships are identical. 3101eb62cbbSBarry Smith This is a BUG. The only way to fix it seems to be to access 3111eb62cbbSBarry Smith aij->A and aij->B directly and not through the MatZeroRows() 3121eb62cbbSBarry Smith routine. 3131eb62cbbSBarry Smith */ 31444a69424SLois Curfman McInnes static int MatZeroRows_MPIAIJ(Mat A,IS is,Scalar *diag) 3151eb62cbbSBarry Smith { 31644a69424SLois Curfman McInnes Mat_MPIAIJ *l = (Mat_MPIAIJ *) A->data; 31717699dbbSLois Curfman McInnes int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 3186abc6512SBarry Smith int *procs,*nprocs,j,found,idx,nsends,*work; 31917699dbbSLois Curfman McInnes int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 3205392566eSBarry Smith int *rvalues,tag = A->tag,count,base,slen,n,*source; 321d6dfbf8fSBarry Smith int *lens,imdex,*lrows,*values; 322d6dfbf8fSBarry Smith MPI_Comm comm = A->comm; 3231eb62cbbSBarry Smith MPI_Request *send_waits,*recv_waits; 3241eb62cbbSBarry Smith MPI_Status recv_status,*send_status; 3251eb62cbbSBarry Smith IS istmp; 3261eb62cbbSBarry Smith 32778b31e54SBarry Smith ierr = ISGetLocalSize(is,&N); CHKERRQ(ierr); 32878b31e54SBarry Smith ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 3291eb62cbbSBarry Smith 3301eb62cbbSBarry Smith /* first count number of contributors to each processor */ 3310452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 332cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 3330452661fSBarry Smith owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 3341eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3351eb62cbbSBarry Smith idx = rows[i]; 3361eb62cbbSBarry Smith found = 0; 33717699dbbSLois Curfman McInnes for ( j=0; j<size; j++ ) { 3381eb62cbbSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 3391eb62cbbSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 3401eb62cbbSBarry Smith } 3411eb62cbbSBarry Smith } 342bbb6d6a8SBarry Smith if (!found) SETERRQ(1,"MatZeroRows_MPIAIJ:Index out of range"); 3431eb62cbbSBarry Smith } 34417699dbbSLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 3451eb62cbbSBarry Smith 3461eb62cbbSBarry Smith /* inform other processors of number of messages and max length*/ 3470452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 34817699dbbSLois Curfman McInnes MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm); 34917699dbbSLois Curfman McInnes nrecvs = work[rank]; 35017699dbbSLois Curfman McInnes MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 35117699dbbSLois Curfman McInnes nmax = work[rank]; 3520452661fSBarry Smith PetscFree(work); 3531eb62cbbSBarry Smith 3541eb62cbbSBarry Smith /* post receives: */ 3550452661fSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 35678b31e54SBarry Smith CHKPTRQ(rvalues); 3570452661fSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request)); 35878b31e54SBarry Smith CHKPTRQ(recv_waits); 3591eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 360416022c9SBarry Smith MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 3611eb62cbbSBarry Smith } 3621eb62cbbSBarry Smith 3631eb62cbbSBarry Smith /* do sends: 3641eb62cbbSBarry Smith 1) starts[i] gives the starting index in svalues for stuff going to 3651eb62cbbSBarry Smith the ith processor 3661eb62cbbSBarry Smith */ 3670452661fSBarry Smith svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 3680452661fSBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 36978b31e54SBarry Smith CHKPTRQ(send_waits); 3700452661fSBarry Smith starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 3711eb62cbbSBarry Smith starts[0] = 0; 37217699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3731eb62cbbSBarry Smith for ( i=0; i<N; i++ ) { 3741eb62cbbSBarry Smith svalues[starts[owner[i]]++] = rows[i]; 3751eb62cbbSBarry Smith } 3761eb62cbbSBarry Smith ISRestoreIndices(is,&rows); 3771eb62cbbSBarry Smith 3781eb62cbbSBarry Smith starts[0] = 0; 37917699dbbSLois Curfman McInnes for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3801eb62cbbSBarry Smith count = 0; 38117699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 3821eb62cbbSBarry Smith if (procs[i]) { 383416022c9SBarry Smith MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++); 3841eb62cbbSBarry Smith } 3851eb62cbbSBarry Smith } 3860452661fSBarry Smith PetscFree(starts); 3871eb62cbbSBarry Smith 38817699dbbSLois Curfman McInnes base = owners[rank]; 3891eb62cbbSBarry Smith 3901eb62cbbSBarry Smith /* wait on receives */ 3910452661fSBarry Smith lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 3921eb62cbbSBarry Smith source = lens + nrecvs; 3931eb62cbbSBarry Smith count = nrecvs; slen = 0; 3941eb62cbbSBarry Smith while (count) { 395d6dfbf8fSBarry Smith MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 3961eb62cbbSBarry Smith /* unpack receives into our local space */ 3971eb62cbbSBarry Smith MPI_Get_count(&recv_status,MPI_INT,&n); 398d6dfbf8fSBarry Smith source[imdex] = recv_status.MPI_SOURCE; 399d6dfbf8fSBarry Smith lens[imdex] = n; 4001eb62cbbSBarry Smith slen += n; 4011eb62cbbSBarry Smith count--; 4021eb62cbbSBarry Smith } 4030452661fSBarry Smith PetscFree(recv_waits); 4041eb62cbbSBarry Smith 4051eb62cbbSBarry Smith /* move the data into the send scatter */ 4060452661fSBarry Smith lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 4071eb62cbbSBarry Smith count = 0; 4081eb62cbbSBarry Smith for ( i=0; i<nrecvs; i++ ) { 4091eb62cbbSBarry Smith values = rvalues + i*nmax; 4101eb62cbbSBarry Smith for ( j=0; j<lens[i]; j++ ) { 4111eb62cbbSBarry Smith lrows[count++] = values[j] - base; 4121eb62cbbSBarry Smith } 4131eb62cbbSBarry Smith } 4140452661fSBarry Smith PetscFree(rvalues); PetscFree(lens); 4150452661fSBarry Smith PetscFree(owner); PetscFree(nprocs); 4161eb62cbbSBarry Smith 4171eb62cbbSBarry Smith /* actually zap the local rows */ 418416022c9SBarry Smith ierr = ISCreateSeq(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 419464493b3SBarry Smith PLogObjectParent(A,istmp); 4200452661fSBarry Smith PetscFree(lrows); 42178b31e54SBarry Smith ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 42278b31e54SBarry Smith ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 42378b31e54SBarry Smith ierr = ISDestroy(istmp); CHKERRQ(ierr); 4241eb62cbbSBarry Smith 4251eb62cbbSBarry Smith /* wait on sends */ 4261eb62cbbSBarry Smith if (nsends) { 4270452661fSBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status)); 42878b31e54SBarry Smith CHKPTRQ(send_status); 4291eb62cbbSBarry Smith MPI_Waitall(nsends,send_waits,send_status); 4300452661fSBarry Smith PetscFree(send_status); 4311eb62cbbSBarry Smith } 4320452661fSBarry Smith PetscFree(send_waits); PetscFree(svalues); 4331eb62cbbSBarry Smith 4341eb62cbbSBarry Smith return 0; 4351eb62cbbSBarry Smith } 4361eb62cbbSBarry Smith 437416022c9SBarry Smith static int MatMult_MPIAIJ(Mat A,Vec xx,Vec yy) 4381eb62cbbSBarry Smith { 439416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 4401eb62cbbSBarry Smith int ierr; 441416022c9SBarry Smith 44264119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 443416022c9SBarry Smith ierr = MatMult(a->A,xx,yy); CHKERRQ(ierr); 44464119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 445416022c9SBarry Smith ierr = MatMultAdd(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 4461eb62cbbSBarry Smith return 0; 4471eb62cbbSBarry Smith } 4481eb62cbbSBarry Smith 449416022c9SBarry Smith static int MatMultAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 450da3a660dSBarry Smith { 451416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 452da3a660dSBarry Smith int ierr; 45364119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 454416022c9SBarry Smith ierr = MatMultAdd(a->A,xx,yy,zz); CHKERRQ(ierr); 45564119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 456416022c9SBarry Smith ierr = MatMultAdd(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 457da3a660dSBarry Smith return 0; 458da3a660dSBarry Smith } 459da3a660dSBarry Smith 460416022c9SBarry Smith static int MatMultTrans_MPIAIJ(Mat A,Vec xx,Vec yy) 461da3a660dSBarry Smith { 462416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 463da3a660dSBarry Smith int ierr; 464da3a660dSBarry Smith 465da3a660dSBarry Smith /* do nondiagonal part */ 466416022c9SBarry Smith ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr); 467da3a660dSBarry Smith /* send it on its way */ 468416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES, 46964119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 470da3a660dSBarry Smith /* do local part */ 471416022c9SBarry Smith ierr = MatMultTrans(a->A,xx,yy); CHKERRQ(ierr); 472da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 473da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 474da3a660dSBarry Smith /* but is not perhaps always true. */ 475416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES, 47664119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 477da3a660dSBarry Smith return 0; 478da3a660dSBarry Smith } 479da3a660dSBarry Smith 480416022c9SBarry Smith static int MatMultTransAdd_MPIAIJ(Mat A,Vec xx,Vec yy,Vec zz) 481da3a660dSBarry Smith { 482416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 483da3a660dSBarry Smith int ierr; 484da3a660dSBarry Smith 485da3a660dSBarry Smith /* do nondiagonal part */ 486416022c9SBarry Smith ierr = MatMultTrans(a->B,xx,a->lvec); CHKERRQ(ierr); 487da3a660dSBarry Smith /* send it on its way */ 488416022c9SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES, 48964119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 490da3a660dSBarry Smith /* do local part */ 491416022c9SBarry Smith ierr = MatMultTransAdd(a->A,xx,yy,zz); CHKERRQ(ierr); 492da3a660dSBarry Smith /* receive remote parts: note this assumes the values are not actually */ 493da3a660dSBarry Smith /* inserted in yy until the next line, which is true for my implementation*/ 494da3a660dSBarry Smith /* but is not perhaps always true. */ 495416022c9SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES, 49664119d58SLois Curfman McInnes (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr); 497da3a660dSBarry Smith return 0; 498da3a660dSBarry Smith } 499da3a660dSBarry Smith 5001eb62cbbSBarry Smith /* 5011eb62cbbSBarry Smith This only works correctly for square matrices where the subblock A->A is the 5021eb62cbbSBarry Smith diagonal block 5031eb62cbbSBarry Smith */ 504416022c9SBarry Smith static int MatGetDiagonal_MPIAIJ(Mat A,Vec v) 5051eb62cbbSBarry Smith { 506416022c9SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 507416022c9SBarry Smith return MatGetDiagonal(a->A,v); 5081eb62cbbSBarry Smith } 5091eb62cbbSBarry Smith 510052efed2SBarry Smith static int MatScale_MPIAIJ(Scalar *aa,Mat A) 511052efed2SBarry Smith { 512052efed2SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 513052efed2SBarry Smith int ierr; 514052efed2SBarry Smith ierr = MatScale(aa,a->A); CHKERRQ(ierr); 515052efed2SBarry Smith ierr = MatScale(aa,a->B); CHKERRQ(ierr); 516052efed2SBarry Smith return 0; 517052efed2SBarry Smith } 518052efed2SBarry Smith 51944a69424SLois Curfman McInnes static int MatDestroy_MPIAIJ(PetscObject obj) 5201eb62cbbSBarry Smith { 5211eb62cbbSBarry Smith Mat mat = (Mat) obj; 52244a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 5231eb62cbbSBarry Smith int ierr; 524a5a9c739SBarry Smith #if defined(PETSC_LOG) 5256e35fa57SLois Curfman McInnes PLogObjectState(obj,"Rows=%d, Cols=%d",aij->M,aij->N); 526a5a9c739SBarry Smith #endif 5270452661fSBarry Smith PetscFree(aij->rowners); 52878b31e54SBarry Smith ierr = MatDestroy(aij->A); CHKERRQ(ierr); 52978b31e54SBarry Smith ierr = MatDestroy(aij->B); CHKERRQ(ierr); 5300452661fSBarry Smith if (aij->colmap) PetscFree(aij->colmap); 5310452661fSBarry Smith if (aij->garray) PetscFree(aij->garray); 5321eb62cbbSBarry Smith if (aij->lvec) VecDestroy(aij->lvec); 533a56f8943SBarry Smith if (aij->Mvctx) VecScatterDestroy(aij->Mvctx); 5347a0afa10SBarry Smith if (aij->rowvalues) PetscFree(aij->rowvalues); 5350452661fSBarry Smith PetscFree(aij); 536a5a9c739SBarry Smith PLogObjectDestroy(mat); 5370452661fSBarry Smith PetscHeaderDestroy(mat); 5381eb62cbbSBarry Smith return 0; 5391eb62cbbSBarry Smith } 5407857610eSBarry Smith #include "draw.h" 541b16a3bb1SBarry Smith #include "pinclude/pviewer.h" 542ee50ffe9SBarry Smith 543416022c9SBarry Smith static int MatView_MPIAIJ_Binary(Mat mat,Viewer viewer) 5441eb62cbbSBarry Smith { 545416022c9SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 546416022c9SBarry Smith int ierr; 547416022c9SBarry Smith 54817699dbbSLois Curfman McInnes if (aij->size == 1) { 549416022c9SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 550416022c9SBarry Smith } 551a523beb4SLois Curfman McInnes else SETERRQ(1,"MatView_MPIAIJ_Binary:Only uniprocessor output supported"); 552416022c9SBarry Smith return 0; 553416022c9SBarry Smith } 554416022c9SBarry Smith 555d7e8b826SBarry Smith static int MatView_MPIAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer) 556416022c9SBarry Smith { 55744a69424SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 558dbb450caSBarry Smith Mat_SeqAIJ* C = (Mat_SeqAIJ*)aij->A->data; 559a56f8943SBarry Smith int ierr, format,shift = C->indexshift,rank; 560d13ab20cSBarry Smith PetscObject vobj = (PetscObject) viewer; 561d636dbe3SBarry Smith FILE *fd; 562416022c9SBarry Smith 563416022c9SBarry Smith if (vobj->type == ASCII_FILE_VIEWER || vobj->type == ASCII_FILES_VIEWER) { 564416022c9SBarry Smith ierr = ViewerFileGetFormat_Private(viewer,&format); 56508480c60SBarry Smith if (format == FILE_FORMAT_INFO_DETAILED) { 56695e01e2fSLois Curfman McInnes int nz, nzalloc, mem, flg; 567a56f8943SBarry Smith MPI_Comm_rank(mat->comm,&rank); 568227d817aSBarry Smith ierr = ViewerFileGetPointer(viewer,&fd); CHKERRQ(ierr); 569a56f8943SBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&nz,&nzalloc,&mem); 57095e01e2fSLois Curfman McInnes ierr = OptionsHasName(PETSC_NULL,"-mat_aij_no_inode",&flg); CHKERRQ(ierr); 571a56f8943SBarry Smith MPIU_Seq_begin(mat->comm,1); 57295e01e2fSLois Curfman McInnes if (flg) fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d, not using I-node routines\n", 57395e01e2fSLois Curfman McInnes rank,aij->m,nz,nzalloc,mem); 57495e01e2fSLois Curfman McInnes else fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d mem %d, using I-node routines\n", 57595e01e2fSLois Curfman McInnes rank,aij->m,nz,nzalloc,mem); 57608480c60SBarry Smith ierr = MatGetInfo(aij->A,MAT_LOCAL,&nz,&nzalloc,&mem); 57795e01e2fSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,nz); 57808480c60SBarry Smith ierr = MatGetInfo(aij->B,MAT_LOCAL,&nz,&nzalloc,&mem); 57995e01e2fSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,nz); 580a56f8943SBarry Smith fflush(fd); 581a56f8943SBarry Smith MPIU_Seq_end(mat->comm,1); 582a40aa06bSLois Curfman McInnes ierr = VecScatterView(aij->Mvctx,viewer); CHKERRQ(ierr); 583416022c9SBarry Smith return 0; 584416022c9SBarry Smith } 58508480c60SBarry Smith else if (format == FILE_FORMAT_INFO) { 58608480c60SBarry Smith return 0; 58708480c60SBarry Smith } 588416022c9SBarry Smith } 589416022c9SBarry Smith 590416022c9SBarry Smith if (vobj->type == ASCII_FILE_VIEWER) { 591227d817aSBarry Smith ierr = ViewerFileGetPointer(viewer,&fd); CHKERRQ(ierr); 5927f813858SBarry Smith MPIU_Seq_begin(mat->comm,1); 593d13ab20cSBarry Smith fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 59417699dbbSLois Curfman McInnes aij->rank,aij->m,aij->rstart,aij->rend,aij->n,aij->cstart, 5951eb62cbbSBarry Smith aij->cend); 59678b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 59778b31e54SBarry Smith ierr = MatView(aij->B,viewer); CHKERRQ(ierr); 598d13ab20cSBarry Smith fflush(fd); 5997f813858SBarry Smith MPIU_Seq_end(mat->comm,1); 600d13ab20cSBarry Smith } 601416022c9SBarry Smith else { 602a56f8943SBarry Smith int size = aij->size; 603a56f8943SBarry Smith rank = aij->rank; 60417699dbbSLois Curfman McInnes if (size == 1) { 60578b31e54SBarry Smith ierr = MatView(aij->A,viewer); CHKERRQ(ierr); 60695373324SBarry Smith } 60795373324SBarry Smith else { 60895373324SBarry Smith /* assemble the entire matrix onto first processor. */ 60995373324SBarry Smith Mat A; 610ec8511deSBarry Smith Mat_SeqAIJ *Aloc; 6112eb8c8abSBarry Smith int M = aij->M, N = aij->N,m,*ai,*aj,row,*cols,i,*ct; 61295373324SBarry Smith Scalar *a; 6132ee70a88SLois Curfman McInnes 61417699dbbSLois Curfman McInnes if (!rank) { 615b4fd4287SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 616c451ab25SLois Curfman McInnes CHKERRQ(ierr); 61795373324SBarry Smith } 61895373324SBarry Smith else { 619b4fd4287SBarry Smith ierr = MatCreateMPIAIJ(mat->comm,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 620c451ab25SLois Curfman McInnes CHKERRQ(ierr); 62195373324SBarry Smith } 622464493b3SBarry Smith PLogObjectParent(mat,A); 623416022c9SBarry Smith 62495373324SBarry Smith /* copy over the A part */ 625ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->A->data; 6262ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 62795373324SBarry Smith row = aij->rstart; 628dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += aij->cstart + shift;} 62995373324SBarry Smith for ( i=0; i<m; i++ ) { 630416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],aj,a,INSERT_VALUES);CHKERRQ(ierr); 63195373324SBarry Smith row++; a += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 63295373324SBarry Smith } 6332ee70a88SLois Curfman McInnes aj = Aloc->j; 634dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= aij->cstart + shift;} 63595373324SBarry Smith 63695373324SBarry Smith /* copy over the B part */ 637ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) aij->B->data; 6382ee70a88SLois Curfman McInnes m = Aloc->m; ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 63995373324SBarry Smith row = aij->rstart; 6400452661fSBarry Smith ct = cols = (int *) PetscMalloc( (ai[m]+1)*sizeof(int) ); CHKPTRQ(cols); 641dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = aij->garray[aj[i]+shift];} 64295373324SBarry Smith for ( i=0; i<m; i++ ) { 643416022c9SBarry Smith ierr = MatSetValues(A,1,&row,ai[i+1]-ai[i],cols,a,INSERT_VALUES);CHKERRQ(ierr); 64495373324SBarry Smith row++; a += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 64595373324SBarry Smith } 6460452661fSBarry Smith PetscFree(ct); 64778b31e54SBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 64878b31e54SBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 64917699dbbSLois Curfman McInnes if (!rank) { 65078b31e54SBarry Smith ierr = MatView(((Mat_MPIAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 65195373324SBarry Smith } 65278b31e54SBarry Smith ierr = MatDestroy(A); CHKERRQ(ierr); 65395373324SBarry Smith } 65495373324SBarry Smith } 6551eb62cbbSBarry Smith return 0; 6561eb62cbbSBarry Smith } 6571eb62cbbSBarry Smith 658416022c9SBarry Smith static int MatView_MPIAIJ(PetscObject obj,Viewer viewer) 659416022c9SBarry Smith { 660416022c9SBarry Smith Mat mat = (Mat) obj; 661416022c9SBarry Smith int ierr; 662416022c9SBarry Smith PetscObject vobj = (PetscObject) viewer; 663416022c9SBarry Smith 664416022c9SBarry Smith if (!viewer) { 665416022c9SBarry Smith viewer = STDOUT_VIEWER_SELF; vobj = (PetscObject) viewer; 666416022c9SBarry Smith } 667416022c9SBarry Smith if (vobj->cookie == DRAW_COOKIE && vobj->type == NULLWINDOW) return 0; 668416022c9SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILE_VIEWER) { 669d7e8b826SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 670416022c9SBarry Smith } 671416022c9SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == ASCII_FILES_VIEWER) { 672d7e8b826SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 673d7e8b826SBarry Smith } 674d7e8b826SBarry Smith else if (vobj->cookie == VIEWER_COOKIE && vobj->type == MATLAB_VIEWER) { 675d7e8b826SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 676416022c9SBarry Smith } 677416022c9SBarry Smith else if (vobj->cookie == DRAW_COOKIE) { 678d7e8b826SBarry Smith ierr = MatView_MPIAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 679416022c9SBarry Smith } 680416022c9SBarry Smith else if (vobj->type == BINARY_FILE_VIEWER) { 681416022c9SBarry Smith return MatView_MPIAIJ_Binary(mat,viewer); 682416022c9SBarry Smith } 683416022c9SBarry Smith return 0; 684416022c9SBarry Smith } 685416022c9SBarry Smith 686ec8511deSBarry Smith extern int MatMarkDiag_SeqAIJ(Mat); 6871eb62cbbSBarry Smith /* 6881eb62cbbSBarry Smith This has to provide several versions. 6891eb62cbbSBarry Smith 6901eb62cbbSBarry Smith 1) per sequential 6911eb62cbbSBarry Smith 2) a) use only local smoothing updating outer values only once. 6921eb62cbbSBarry Smith b) local smoothing updating outer values each inner iteration 693d6dfbf8fSBarry Smith 3) color updating out values betwen colors. 6941eb62cbbSBarry Smith */ 695fc76ce87SLois Curfman McInnes static int MatRelax_MPIAIJ(Mat matin,Vec bb,double omega,MatSORType flag, 696dbb450caSBarry Smith double fshift,int its,Vec xx) 6978a729477SBarry Smith { 69844a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 699d6dfbf8fSBarry Smith Mat AA = mat->A, BB = mat->B; 700ec8511deSBarry Smith Mat_SeqAIJ *A = (Mat_SeqAIJ *) AA->data, *B = (Mat_SeqAIJ *)BB->data; 7016abc6512SBarry Smith Scalar zero = 0.0,*b,*x,*xs,*ls,d,*v,sum,scale,*t,*ts; 7026abc6512SBarry Smith int ierr,*idx, *diag; 703416022c9SBarry Smith int n = mat->n, m = mat->m, i,shift = A->indexshift; 704da3a660dSBarry Smith Vec tt; 7058a729477SBarry Smith 706d6dfbf8fSBarry Smith VecGetArray(xx,&x); VecGetArray(bb,&b); VecGetArray(mat->lvec,&ls); 707dbb450caSBarry Smith xs = x + shift; /* shift by one for index start of 1 */ 708dbb450caSBarry Smith ls = ls + shift; 709ec8511deSBarry Smith if (!A->diag) {if ((ierr = MatMarkDiag_SeqAIJ(AA))) return ierr;} 710d6dfbf8fSBarry Smith diag = A->diag; 711acb40c82SBarry Smith if (flag == SOR_APPLY_UPPER || flag == SOR_APPLY_LOWER) { 71248d91487SBarry Smith SETERRQ(1,"MatRelax_MPIAIJ:Option not supported"); 713acb40c82SBarry Smith } 714da3a660dSBarry Smith if (flag & SOR_EISENSTAT) { 715da3a660dSBarry Smith /* Let A = L + U + D; where L is lower trianglar, 716da3a660dSBarry Smith U is upper triangular, E is diagonal; This routine applies 717da3a660dSBarry Smith 718da3a660dSBarry Smith (L + E)^{-1} A (U + E)^{-1} 719da3a660dSBarry Smith 720da3a660dSBarry Smith to a vector efficiently using Eisenstat's trick. This is for 721da3a660dSBarry Smith the case of SSOR preconditioner, so E is D/omega where omega 722da3a660dSBarry Smith is the relaxation factor. 723da3a660dSBarry Smith */ 72478b31e54SBarry Smith ierr = VecDuplicate(xx,&tt); CHKERRQ(ierr); 725464493b3SBarry Smith PLogObjectParent(matin,tt); 726da3a660dSBarry Smith VecGetArray(tt,&t); 727da3a660dSBarry Smith scale = (2.0/omega) - 1.0; 728da3a660dSBarry Smith /* x = (E + U)^{-1} b */ 729da3a660dSBarry Smith VecSet(&zero,mat->lvec); 73064119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 73178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 732da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 733da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 734dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 735dbb450caSBarry Smith v = A->a + diag[i] + !shift; 736da3a660dSBarry Smith sum = b[i]; 737da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 738dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 739da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 740dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 741dbb450caSBarry Smith v = B->a + B->i[i] + shift; 742da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 743da3a660dSBarry Smith x[i] = omega*(sum/d); 744da3a660dSBarry Smith } 74564119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 74678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 747da3a660dSBarry Smith 748da3a660dSBarry Smith /* t = b - (2*E - D)x */ 749da3a660dSBarry Smith v = A->a; 750dbb450caSBarry Smith for ( i=0; i<m; i++ ) { t[i] = b[i] - scale*(v[*diag++ + shift])*x[i]; } 751da3a660dSBarry Smith 752da3a660dSBarry Smith /* t = (E + L)^{-1}t */ 753dbb450caSBarry Smith ts = t + shift; /* shifted by one for index start of a or mat->j*/ 754da3a660dSBarry Smith diag = A->diag; 755da3a660dSBarry Smith VecSet(&zero,mat->lvec); 75664119d58SLois Curfman McInnes ierr = VecPipelineBegin(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 75778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 758da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 759da3a660dSBarry Smith n = diag[i] - A->i[i]; 760dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 761dbb450caSBarry Smith v = A->a + A->i[i] + shift; 762da3a660dSBarry Smith sum = t[i]; 763da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ts,v,idx,n); 764dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 765da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 766dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 767dbb450caSBarry Smith v = B->a + B->i[i] + shift; 768da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 769da3a660dSBarry Smith t[i] = omega*(sum/d); 770da3a660dSBarry Smith } 77164119d58SLois Curfman McInnes ierr = VecPipelineEnd(tt,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 77278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 773da3a660dSBarry Smith /* x = x + t */ 774da3a660dSBarry Smith for ( i=0; i<m; i++ ) { x[i] += t[i]; } 775da3a660dSBarry Smith VecDestroy(tt); 776da3a660dSBarry Smith return 0; 777da3a660dSBarry Smith } 778da3a660dSBarry Smith 7791eb62cbbSBarry Smith 780d6dfbf8fSBarry Smith if ((flag & SOR_SYMMETRIC_SWEEP) == SOR_SYMMETRIC_SWEEP){ 781da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 782da3a660dSBarry Smith VecSet(&zero,mat->lvec); VecSet(&zero,xx); 783da3a660dSBarry Smith } 784da3a660dSBarry Smith else { 78564119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 78678b31e54SBarry Smith CHKERRQ(ierr); 78764119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 78878b31e54SBarry Smith CHKERRQ(ierr); 789da3a660dSBarry Smith } 790d6dfbf8fSBarry Smith while (its--) { 791d6dfbf8fSBarry Smith /* go down through the rows */ 79264119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 79378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 794d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 795d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 796dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 797dbb450caSBarry Smith v = A->a + A->i[i] + shift; 798d6dfbf8fSBarry Smith sum = b[i]; 799d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 800dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 801d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 802dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 803dbb450caSBarry Smith v = B->a + B->i[i] + shift; 804d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 805d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 806d6dfbf8fSBarry Smith } 80764119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 80878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 809d6dfbf8fSBarry Smith /* come up through the rows */ 81064119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 81178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 812d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 813d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 814dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 815dbb450caSBarry Smith v = A->a + A->i[i] + shift; 816d6dfbf8fSBarry Smith sum = b[i]; 817d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 818dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 819d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 820dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 821dbb450caSBarry Smith v = B->a + B->i[i] + shift; 822d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 823d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 824d6dfbf8fSBarry Smith } 82564119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 82678b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 827d6dfbf8fSBarry Smith } 828d6dfbf8fSBarry Smith } 829d6dfbf8fSBarry Smith else if (flag & SOR_FORWARD_SWEEP){ 830da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 831da3a660dSBarry Smith VecSet(&zero,mat->lvec); 83264119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 83378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 834da3a660dSBarry Smith for ( i=0; i<m; i++ ) { 835da3a660dSBarry Smith n = diag[i] - A->i[i]; 836dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 837dbb450caSBarry Smith v = A->a + A->i[i] + shift; 838da3a660dSBarry Smith sum = b[i]; 839da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 840dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 841da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 842dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 843dbb450caSBarry Smith v = B->a + B->i[i] + shift; 844da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 845da3a660dSBarry Smith x[i] = omega*(sum/d); 846da3a660dSBarry Smith } 84764119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 84878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 849da3a660dSBarry Smith its--; 850da3a660dSBarry Smith } 851d6dfbf8fSBarry Smith while (its--) { 85264119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 85378b31e54SBarry Smith CHKERRQ(ierr); 85464119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_UP,mat->Mvctx); 85578b31e54SBarry Smith CHKERRQ(ierr); 85664119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 85778b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 858d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 859d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 860dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 861dbb450caSBarry Smith v = A->a + A->i[i] + shift; 862d6dfbf8fSBarry Smith sum = b[i]; 863d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 864dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 865d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 866dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 867dbb450caSBarry Smith v = B->a + B->i[i] + shift; 868d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 869d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 870d6dfbf8fSBarry Smith } 87164119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_DOWN, 87278b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 873d6dfbf8fSBarry Smith } 874d6dfbf8fSBarry Smith } 875d6dfbf8fSBarry Smith else if (flag & SOR_BACKWARD_SWEEP){ 876da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 877da3a660dSBarry Smith VecSet(&zero,mat->lvec); 87864119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 87978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 880da3a660dSBarry Smith for ( i=m-1; i>-1; i-- ) { 881da3a660dSBarry Smith n = A->i[i+1] - diag[i] - 1; 882dbb450caSBarry Smith idx = A->j + diag[i] + !shift; 883dbb450caSBarry Smith v = A->a + diag[i] + !shift; 884da3a660dSBarry Smith sum = b[i]; 885da3a660dSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 886dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 887da3a660dSBarry Smith n = B->i[i+1] - B->i[i]; 888dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 889dbb450caSBarry Smith v = B->a + B->i[i] + shift; 890da3a660dSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 891da3a660dSBarry Smith x[i] = omega*(sum/d); 892da3a660dSBarry Smith } 89364119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 89478b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 895da3a660dSBarry Smith its--; 896da3a660dSBarry Smith } 897d6dfbf8fSBarry Smith while (its--) { 89864119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN, 89978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 90064119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_DOWN, 90178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 90264119d58SLois Curfman McInnes ierr = VecPipelineBegin(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 90378b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 904d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 905d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 906dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 907dbb450caSBarry Smith v = A->a + A->i[i] + shift; 908d6dfbf8fSBarry Smith sum = b[i]; 909d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 910dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 911d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 912dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 913dbb450caSBarry Smith v = B->a + B->i[i] + shift; 914d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 915d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 916d6dfbf8fSBarry Smith } 91764119d58SLois Curfman McInnes ierr = VecPipelineEnd(xx,mat->lvec,INSERT_VALUES,PIPELINE_UP, 91878b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 919d6dfbf8fSBarry Smith } 920d6dfbf8fSBarry Smith } 921d6dfbf8fSBarry Smith else if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 922da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 923dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 924da3a660dSBarry Smith } 92564119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 92678b31e54SBarry Smith CHKERRQ(ierr); 92764119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 92878b31e54SBarry Smith CHKERRQ(ierr); 929d6dfbf8fSBarry Smith while (its--) { 930d6dfbf8fSBarry Smith /* go down through the rows */ 931d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 932d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 933dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 934dbb450caSBarry Smith v = A->a + A->i[i] + shift; 935d6dfbf8fSBarry Smith sum = b[i]; 936d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 937dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 938d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 939dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 940dbb450caSBarry Smith v = B->a + B->i[i] + shift; 941d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 942d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 943d6dfbf8fSBarry Smith } 944d6dfbf8fSBarry Smith /* come up through the rows */ 945d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 946d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 947dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 948dbb450caSBarry Smith v = A->a + A->i[i] + shift; 949d6dfbf8fSBarry Smith sum = b[i]; 950d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 951dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 952d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 953dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 954dbb450caSBarry Smith v = B->a + B->i[i] + shift; 955d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 956d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 957d6dfbf8fSBarry Smith } 958d6dfbf8fSBarry Smith } 959d6dfbf8fSBarry Smith } 960d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 961da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 962dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 963da3a660dSBarry Smith } 96464119d58SLois Curfman McInnes ierr=VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 96578b31e54SBarry Smith CHKERRQ(ierr); 96664119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL,mat->Mvctx); 96778b31e54SBarry Smith CHKERRQ(ierr); 968d6dfbf8fSBarry Smith while (its--) { 969d6dfbf8fSBarry Smith for ( i=0; i<m; i++ ) { 970d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 971dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 972dbb450caSBarry Smith v = A->a + A->i[i] + shift; 973d6dfbf8fSBarry Smith sum = b[i]; 974d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 975dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 976d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 977dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 978dbb450caSBarry Smith v = B->a + B->i[i] + shift; 979d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 980d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 981d6dfbf8fSBarry Smith } 982d6dfbf8fSBarry Smith } 983d6dfbf8fSBarry Smith } 984d6dfbf8fSBarry Smith else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 985da3a660dSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 986dbb450caSBarry Smith return MatRelax(mat->A,bb,omega,flag,fshift,its,xx); 987da3a660dSBarry Smith } 98864119d58SLois Curfman McInnes ierr = VecScatterBegin(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL, 98978b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 99064119d58SLois Curfman McInnes ierr = VecScatterEnd(xx,mat->lvec,INSERT_VALUES,SCATTER_ALL, 99178b31e54SBarry Smith mat->Mvctx); CHKERRQ(ierr); 992d6dfbf8fSBarry Smith while (its--) { 993d6dfbf8fSBarry Smith for ( i=m-1; i>-1; i-- ) { 994d6dfbf8fSBarry Smith n = A->i[i+1] - A->i[i]; 995dbb450caSBarry Smith idx = A->j + A->i[i] + shift; 996dbb450caSBarry Smith v = A->a + A->i[i] + shift; 997d6dfbf8fSBarry Smith sum = b[i]; 998d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,xs,v,idx,n); 999dbb450caSBarry Smith d = fshift + A->a[diag[i]+shift]; 1000d6dfbf8fSBarry Smith n = B->i[i+1] - B->i[i]; 1001dbb450caSBarry Smith idx = B->j + B->i[i] + shift; 1002dbb450caSBarry Smith v = B->a + B->i[i] + shift; 1003d6dfbf8fSBarry Smith SPARSEDENSEMDOT(sum,ls,v,idx,n); 1004d6dfbf8fSBarry Smith x[i] = (1. - omega)*x[i] + omega*(sum/d + x[i]); 1005d6dfbf8fSBarry Smith } 1006d6dfbf8fSBarry Smith } 1007d6dfbf8fSBarry Smith } 10088a729477SBarry Smith return 0; 10098a729477SBarry Smith } 1010a66be287SLois Curfman McInnes 1011fc76ce87SLois Curfman McInnes static int MatGetInfo_MPIAIJ(Mat matin,MatInfoType flag,int *nz, 1012fc76ce87SLois Curfman McInnes int *nzalloc,int *mem) 1013a66be287SLois Curfman McInnes { 1014a66be287SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1015a66be287SLois Curfman McInnes Mat A = mat->A, B = mat->B; 1016a66be287SLois Curfman McInnes int ierr, isend[3], irecv[3], nzA, nzallocA, memA; 1017a66be287SLois Curfman McInnes 101878b31e54SBarry Smith ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr); 101978b31e54SBarry Smith ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr); 1020a66be287SLois Curfman McInnes isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA; 1021a66be287SLois Curfman McInnes if (flag == MAT_LOCAL) { 1022a66be287SLois Curfman McInnes *nz = isend[0]; *nzalloc = isend[1]; *mem = isend[2]; 1023a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 1024d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_MAX,matin->comm); 1025a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 1026a66be287SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 1027d65a2f8fSBarry Smith MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_SUM,matin->comm); 1028a66be287SLois Curfman McInnes *nz = irecv[0]; *nzalloc = irecv[1]; *mem = irecv[2]; 1029a66be287SLois Curfman McInnes } 1030a66be287SLois Curfman McInnes return 0; 1031a66be287SLois Curfman McInnes } 1032a66be287SLois Curfman McInnes 1033299609e3SLois Curfman McInnes extern int MatLUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,Mat*); 1034299609e3SLois Curfman McInnes extern int MatLUFactorNumeric_MPIAIJ(Mat,Mat*); 1035299609e3SLois Curfman McInnes extern int MatLUFactor_MPIAIJ(Mat,IS,IS,double); 1036299609e3SLois Curfman McInnes extern int MatILUFactorSymbolic_MPIAIJ(Mat,IS,IS,double,int,Mat *); 1037299609e3SLois Curfman McInnes extern int MatSolve_MPIAIJ(Mat,Vec,Vec); 1038299609e3SLois Curfman McInnes extern int MatSolveAdd_MPIAIJ(Mat,Vec,Vec,Vec); 1039299609e3SLois Curfman McInnes extern int MatSolveTrans_MPIAIJ(Mat,Vec,Vec); 1040299609e3SLois Curfman McInnes extern int MatSolveTransAdd_MPIAIJ(Mat,Vec,Vec,Vec); 1041299609e3SLois Curfman McInnes 1042416022c9SBarry Smith static int MatSetOption_MPIAIJ(Mat A,MatOption op) 1043c74985f6SBarry Smith { 1044c0bbcb79SLois Curfman McInnes Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1045c74985f6SBarry Smith 1046c0bbcb79SLois Curfman McInnes if (op == NO_NEW_NONZERO_LOCATIONS || 1047c0bbcb79SLois Curfman McInnes op == YES_NEW_NONZERO_LOCATIONS || 1048c0bbcb79SLois Curfman McInnes op == COLUMNS_SORTED || 1049c0bbcb79SLois Curfman McInnes op == ROW_ORIENTED) { 1050c0bbcb79SLois Curfman McInnes MatSetOption(a->A,op); 1051c0bbcb79SLois Curfman McInnes MatSetOption(a->B,op); 1052c74985f6SBarry Smith } 1053c0bbcb79SLois Curfman McInnes else if (op == ROWS_SORTED || 1054c0bbcb79SLois Curfman McInnes op == SYMMETRIC_MATRIX || 1055c0bbcb79SLois Curfman McInnes op == STRUCTURALLY_SYMMETRIC_MATRIX || 1056c0bbcb79SLois Curfman McInnes op == YES_NEW_DIAGONALS) 1057c0bbcb79SLois Curfman McInnes PLogInfo((PetscObject)A,"Info:MatSetOption_MPIAIJ:Option ignored\n"); 10584b0e389bSBarry Smith else if (op == COLUMN_ORIENTED) { 10594b0e389bSBarry Smith a->roworiented = 0; 10604b0e389bSBarry Smith MatSetOption(a->A,op); 10614b0e389bSBarry Smith MatSetOption(a->B,op); 10624b0e389bSBarry Smith } 1063c0bbcb79SLois Curfman McInnes else if (op == NO_NEW_DIAGONALS) 10644d39ef84SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:NO_NEW_DIAGONALS");} 1065c0bbcb79SLois Curfman McInnes else 10664d39ef84SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIAIJ:unknown option");} 1067c74985f6SBarry Smith return 0; 1068c74985f6SBarry Smith } 1069c74985f6SBarry Smith 1070d1710a03SLois Curfman McInnes static int MatGetSize_MPIAIJ(Mat matin,int *m,int *n) 1071c74985f6SBarry Smith { 107244a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1073c74985f6SBarry Smith *m = mat->M; *n = mat->N; 1074c74985f6SBarry Smith return 0; 1075c74985f6SBarry Smith } 1076c74985f6SBarry Smith 1077d1710a03SLois Curfman McInnes static int MatGetLocalSize_MPIAIJ(Mat matin,int *m,int *n) 1078c74985f6SBarry Smith { 107944a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1080b7c46309SBarry Smith *m = mat->m; *n = mat->N; 1081c74985f6SBarry Smith return 0; 1082c74985f6SBarry Smith } 1083c74985f6SBarry Smith 1084d1710a03SLois Curfman McInnes static int MatGetOwnershipRange_MPIAIJ(Mat matin,int *m,int *n) 1085c74985f6SBarry Smith { 108644a69424SLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 1087c74985f6SBarry Smith *m = mat->rstart; *n = mat->rend; 1088c74985f6SBarry Smith return 0; 1089c74985f6SBarry Smith } 1090c74985f6SBarry Smith 1091*6d84be18SBarry Smith extern int MatGetRow_SeqAIJ(Mat,int,int*,int**,Scalar**); 1092*6d84be18SBarry Smith extern int MatRestoreRow_SeqAIJ(Mat,int,int*,int**,Scalar**); 1093*6d84be18SBarry Smith 1094*6d84be18SBarry Smith int MatGetRow_MPIAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 109539e00950SLois Curfman McInnes { 1096154123eaSLois Curfman McInnes Mat_MPIAIJ *mat = (Mat_MPIAIJ *) matin->data; 109770f0671dSBarry Smith Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 1098154123eaSLois Curfman McInnes int i, ierr, *cworkA, *cworkB, **pcA, **pcB, cstart = mat->cstart; 1099154123eaSLois Curfman McInnes int nztot, nzA, nzB, lrow, rstart = mat->rstart, rend = mat->rend; 110070f0671dSBarry Smith int *cmap, *idx_p; 110139e00950SLois Curfman McInnes 11027a0afa10SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(1,"MatGetRow_MPIAIJ:Already active"); 11037a0afa10SBarry Smith mat->getrowactive = PETSC_TRUE; 11047a0afa10SBarry Smith 110570f0671dSBarry Smith if (!mat->rowvalues && (idx || v)) { 11067a0afa10SBarry Smith /* 11077a0afa10SBarry Smith allocate enough space to hold information from the longest row. 11087a0afa10SBarry Smith */ 11097a0afa10SBarry Smith Mat_SeqAIJ *Aa = (Mat_SeqAIJ *) mat->A->data,*Ba = (Mat_SeqAIJ *) mat->B->data; 11107a0afa10SBarry Smith int max = 1,n = mat->n,tmp; 11117a0afa10SBarry Smith for ( i=0; i<n; i++ ) { 11127a0afa10SBarry Smith tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 11137a0afa10SBarry Smith if (max < tmp) { max = tmp; } 11147a0afa10SBarry Smith } 11157a0afa10SBarry Smith mat->rowvalues = (Scalar *) PetscMalloc( max*(sizeof(int)+sizeof(Scalar))); 11167a0afa10SBarry Smith CHKPTRQ(mat->rowvalues); 11177a0afa10SBarry Smith mat->rowindices = (int *) (mat->rowvalues + max); 11187a0afa10SBarry Smith } 11197a0afa10SBarry Smith 11207a0afa10SBarry Smith 1121b49de8d1SLois Curfman McInnes if (row < rstart || row >= rend) SETERRQ(1,"MatGetRow_MPIAIJ:Only local rows") 1122abc0e9e4SLois Curfman McInnes lrow = row - rstart; 112339e00950SLois Curfman McInnes 1124154123eaSLois Curfman McInnes pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1125154123eaSLois Curfman McInnes if (!v) {pvA = 0; pvB = 0;} 1126154123eaSLois Curfman McInnes if (!idx) {pcA = 0; if (!v) pcB = 0;} 1127*6d84be18SBarry Smith ierr = MatGetRow_SeqAIJ(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 1128*6d84be18SBarry Smith ierr = MatGetRow_SeqAIJ(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1129154123eaSLois Curfman McInnes nztot = nzA + nzB; 1130154123eaSLois Curfman McInnes 113170f0671dSBarry Smith cmap = mat->garray; 1132154123eaSLois Curfman McInnes if (v || idx) { 1133154123eaSLois Curfman McInnes if (nztot) { 1134154123eaSLois Curfman McInnes /* Sort by increasing column numbers, assuming A and B already sorted */ 113570f0671dSBarry Smith int imark = -1; 1136154123eaSLois Curfman McInnes if (v) { 113770f0671dSBarry Smith *v = v_p = mat->rowvalues; 113839e00950SLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 113970f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) v_p[i] = vworkB[i]; 1140154123eaSLois Curfman McInnes else break; 1141154123eaSLois Curfman McInnes } 1142154123eaSLois Curfman McInnes imark = i; 114370f0671dSBarry Smith for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 114470f0671dSBarry Smith for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 1145154123eaSLois Curfman McInnes } 1146154123eaSLois Curfman McInnes if (idx) { 114770f0671dSBarry Smith *idx = idx_p = mat->rowindices; 114870f0671dSBarry Smith if (imark > -1) { 114970f0671dSBarry Smith for ( i=0; i<imark; i++ ) { 115070f0671dSBarry Smith idx_p[i] = cmap[cworkB[i]]; 115170f0671dSBarry Smith } 115270f0671dSBarry Smith } else { 1153154123eaSLois Curfman McInnes for ( i=0; i<nzB; i++ ) { 115470f0671dSBarry Smith if (cmap[cworkB[i]] < cstart) idx_p[i] = cmap[cworkB[i]]; 1155154123eaSLois Curfman McInnes else break; 1156154123eaSLois Curfman McInnes } 1157154123eaSLois Curfman McInnes imark = i; 115870f0671dSBarry Smith } 115970f0671dSBarry Smith for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart + cworkA[i]; 116070f0671dSBarry Smith for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]]; 116139e00950SLois Curfman McInnes } 116239e00950SLois Curfman McInnes } 116339e00950SLois Curfman McInnes else {*idx = 0; *v=0;} 1164154123eaSLois Curfman McInnes } 116539e00950SLois Curfman McInnes *nz = nztot; 1166*6d84be18SBarry Smith ierr = MatRestoreRow_SeqAIJ(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 1167*6d84be18SBarry Smith ierr = MatRestoreRow_SeqAIJ(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 116839e00950SLois Curfman McInnes return 0; 116939e00950SLois Curfman McInnes } 117039e00950SLois Curfman McInnes 1171*6d84be18SBarry Smith int MatRestoreRow_MPIAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 117239e00950SLois Curfman McInnes { 11737a0afa10SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 11747a0afa10SBarry Smith if (aij->getrowactive == PETSC_FALSE) { 11757a0afa10SBarry Smith SETERRQ(1,"MatRestoreRow_MPIAIJ:MatGetRow not called"); 11767a0afa10SBarry Smith } 11777a0afa10SBarry Smith aij->getrowactive = PETSC_FALSE; 117839e00950SLois Curfman McInnes return 0; 117939e00950SLois Curfman McInnes } 118039e00950SLois Curfman McInnes 1181cddf8d76SBarry Smith static int MatNorm_MPIAIJ(Mat mat,NormType type,double *norm) 1182855ac2c5SLois Curfman McInnes { 1183855ac2c5SLois Curfman McInnes Mat_MPIAIJ *aij = (Mat_MPIAIJ *) mat->data; 1184ec8511deSBarry Smith Mat_SeqAIJ *amat = (Mat_SeqAIJ*) aij->A->data, *bmat = (Mat_SeqAIJ*) aij->B->data; 1185416022c9SBarry Smith int ierr, i, j, cstart = aij->cstart,shift = amat->indexshift; 1186416022c9SBarry Smith double sum = 0.0; 118704ca555eSLois Curfman McInnes Scalar *v; 118804ca555eSLois Curfman McInnes 118917699dbbSLois Curfman McInnes if (aij->size == 1) { 119014183eadSLois Curfman McInnes ierr = MatNorm(aij->A,type,norm); CHKERRQ(ierr); 119137fa93a5SLois Curfman McInnes } else { 119204ca555eSLois Curfman McInnes if (type == NORM_FROBENIUS) { 119304ca555eSLois Curfman McInnes v = amat->a; 119404ca555eSLois Curfman McInnes for (i=0; i<amat->nz; i++ ) { 119504ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 119604ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 119704ca555eSLois Curfman McInnes #else 119804ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 119904ca555eSLois Curfman McInnes #endif 120004ca555eSLois Curfman McInnes } 120104ca555eSLois Curfman McInnes v = bmat->a; 120204ca555eSLois Curfman McInnes for (i=0; i<bmat->nz; i++ ) { 120304ca555eSLois Curfman McInnes #if defined(PETSC_COMPLEX) 120404ca555eSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 120504ca555eSLois Curfman McInnes #else 120604ca555eSLois Curfman McInnes sum += (*v)*(*v); v++; 120704ca555eSLois Curfman McInnes #endif 120804ca555eSLois Curfman McInnes } 1209*6d84be18SBarry Smith MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm); 121004ca555eSLois Curfman McInnes *norm = sqrt(*norm); 121104ca555eSLois Curfman McInnes } 121204ca555eSLois Curfman McInnes else if (type == NORM_1) { /* max column norm */ 121304ca555eSLois Curfman McInnes double *tmp, *tmp2; 121404ca555eSLois Curfman McInnes int *jj, *garray = aij->garray; 12150452661fSBarry Smith tmp = (double *) PetscMalloc( aij->N*sizeof(double) ); CHKPTRQ(tmp); 12160452661fSBarry Smith tmp2 = (double *) PetscMalloc( aij->N*sizeof(double) ); CHKPTRQ(tmp2); 1217cddf8d76SBarry Smith PetscMemzero(tmp,aij->N*sizeof(double)); 121804ca555eSLois Curfman McInnes *norm = 0.0; 121904ca555eSLois Curfman McInnes v = amat->a; jj = amat->j; 122004ca555eSLois Curfman McInnes for ( j=0; j<amat->nz; j++ ) { 1221579c6b6fSBarry Smith tmp[cstart + *jj++ + shift] += PetscAbsScalar(*v); v++; 122204ca555eSLois Curfman McInnes } 122304ca555eSLois Curfman McInnes v = bmat->a; jj = bmat->j; 122404ca555eSLois Curfman McInnes for ( j=0; j<bmat->nz; j++ ) { 1225579c6b6fSBarry Smith tmp[garray[*jj++ + shift]] += PetscAbsScalar(*v); v++; 122604ca555eSLois Curfman McInnes } 1227*6d84be18SBarry Smith MPI_Allreduce(tmp,tmp2,aij->N,MPI_DOUBLE,MPI_SUM,mat->comm); 122804ca555eSLois Curfman McInnes for ( j=0; j<aij->N; j++ ) { 122904ca555eSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 123004ca555eSLois Curfman McInnes } 12310452661fSBarry Smith PetscFree(tmp); PetscFree(tmp2); 123204ca555eSLois Curfman McInnes } 123304ca555eSLois Curfman McInnes else if (type == NORM_INFINITY) { /* max row norm */ 1234515d9167SLois Curfman McInnes double ntemp = 0.0; 123504ca555eSLois Curfman McInnes for ( j=0; j<amat->m; j++ ) { 1236dbb450caSBarry Smith v = amat->a + amat->i[j] + shift; 123704ca555eSLois Curfman McInnes sum = 0.0; 123804ca555eSLois Curfman McInnes for ( i=0; i<amat->i[j+1]-amat->i[j]; i++ ) { 1239cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 124004ca555eSLois Curfman McInnes } 1241dbb450caSBarry Smith v = bmat->a + bmat->i[j] + shift; 124204ca555eSLois Curfman McInnes for ( i=0; i<bmat->i[j+1]-bmat->i[j]; i++ ) { 1243cddf8d76SBarry Smith sum += PetscAbsScalar(*v); v++; 124404ca555eSLois Curfman McInnes } 1245515d9167SLois Curfman McInnes if (sum > ntemp) ntemp = sum; 124604ca555eSLois Curfman McInnes } 1247*6d84be18SBarry Smith MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,mat->comm); 124804ca555eSLois Curfman McInnes } 124904ca555eSLois Curfman McInnes else { 1250515d9167SLois Curfman McInnes SETERRQ(1,"MatNorm_MPIAIJ:No support for two norm"); 125104ca555eSLois Curfman McInnes } 125237fa93a5SLois Curfman McInnes } 1253855ac2c5SLois Curfman McInnes return 0; 1254855ac2c5SLois Curfman McInnes } 1255855ac2c5SLois Curfman McInnes 12560de55854SLois Curfman McInnes static int MatTranspose_MPIAIJ(Mat A,Mat *matout) 1257b7c46309SBarry Smith { 1258b7c46309SBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ *) A->data; 1259dbb450caSBarry Smith Mat_SeqAIJ *Aloc = (Mat_SeqAIJ *) a->A->data; 1260416022c9SBarry Smith int ierr,shift = Aloc->indexshift; 1261416022c9SBarry Smith Mat B; 1262b7c46309SBarry Smith int M = a->M, N = a->N,m,*ai,*aj,row,*cols,i,*ct; 1263b7c46309SBarry Smith Scalar *array; 1264b7c46309SBarry Smith 12653638b69dSLois Curfman McInnes if (matout == PETSC_NULL && M != N) 12663638b69dSLois Curfman McInnes SETERRQ(1,"MatTranspose_MPIAIJ:Square matrix only for in-place"); 1267b4fd4287SBarry Smith ierr = MatCreateMPIAIJ(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,0,PETSC_NULL,0, 1268b4fd4287SBarry Smith PETSC_NULL,&B); CHKERRQ(ierr); 1269b7c46309SBarry Smith 1270b7c46309SBarry Smith /* copy over the A part */ 1271ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->A->data; 1272b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1273b7c46309SBarry Smith row = a->rstart; 1274dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] += a->cstart + shift;} 1275b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1276416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],aj,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1277b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; aj += ai[i+1]-ai[i]; 1278b7c46309SBarry Smith } 1279b7c46309SBarry Smith aj = Aloc->j; 12804af08d9eSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {aj[i] -= a->cstart + shift;} 1281b7c46309SBarry Smith 1282b7c46309SBarry Smith /* copy over the B part */ 1283ec8511deSBarry Smith Aloc = (Mat_SeqAIJ*) a->B->data; 1284b7c46309SBarry Smith m = Aloc->m; ai = Aloc->i; aj = Aloc->j; array = Aloc->a; 1285b7c46309SBarry Smith row = a->rstart; 12860452661fSBarry Smith ct = cols = (int *) PetscMalloc( (1+ai[m]-shift)*sizeof(int) ); CHKPTRQ(cols); 1287dbb450caSBarry Smith for ( i=0; i<ai[m]+shift; i++ ) {cols[i] = a->garray[aj[i]+shift];} 1288b7c46309SBarry Smith for ( i=0; i<m; i++ ) { 1289416022c9SBarry Smith ierr = MatSetValues(B,ai[i+1]-ai[i],cols,1,&row,array,INSERT_VALUES);CHKERRQ(ierr); 1290b7c46309SBarry Smith row++; array += ai[i+1]-ai[i]; cols += ai[i+1]-ai[i]; 1291b7c46309SBarry Smith } 12920452661fSBarry Smith PetscFree(ct); 1293b7c46309SBarry Smith ierr = MatAssemblyBegin(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 1294b7c46309SBarry Smith ierr = MatAssemblyEnd(B,FINAL_ASSEMBLY); CHKERRQ(ierr); 12953638b69dSLois Curfman McInnes if (matout != PETSC_NULL) { 12960de55854SLois Curfman McInnes *matout = B; 12970de55854SLois Curfman McInnes } else { 12980de55854SLois Curfman McInnes /* This isn't really an in-place transpose .... but free data structures from a */ 12990452661fSBarry Smith PetscFree(a->rowners); 13000de55854SLois Curfman McInnes ierr = MatDestroy(a->A); CHKERRQ(ierr); 13010de55854SLois Curfman McInnes ierr = MatDestroy(a->B); CHKERRQ(ierr); 13020452661fSBarry Smith if (a->colmap) PetscFree(a->colmap); 13030452661fSBarry Smith if (a->garray) PetscFree(a->garray); 13040de55854SLois Curfman McInnes if (a->lvec) VecDestroy(a->lvec); 1305a56f8943SBarry Smith if (a->Mvctx) VecScatterDestroy(a->Mvctx); 13060452661fSBarry Smith PetscFree(a); 1307416022c9SBarry Smith PetscMemcpy(A,B,sizeof(struct _Mat)); 13080452661fSBarry Smith PetscHeaderDestroy(B); 13090de55854SLois Curfman McInnes } 1310b7c46309SBarry Smith return 0; 1311b7c46309SBarry Smith } 1312b7c46309SBarry Smith 1313682d7d0cSBarry Smith extern int MatPrintHelp_SeqAIJ(Mat); 1314682d7d0cSBarry Smith static int MatPrintHelp_MPIAIJ(Mat A) 1315682d7d0cSBarry Smith { 1316682d7d0cSBarry Smith Mat_MPIAIJ *a = (Mat_MPIAIJ*) A->data; 1317682d7d0cSBarry Smith 1318682d7d0cSBarry Smith if (!a->rank) return MatPrintHelp_SeqAIJ(a->A); 1319682d7d0cSBarry Smith else return 0; 1320682d7d0cSBarry Smith } 1321682d7d0cSBarry Smith 1322fc76ce87SLois Curfman McInnes extern int MatConvert_MPIAIJ(Mat,MatType,Mat *); 13233d1612f7SBarry Smith static int MatConvertSameType_MPIAIJ(Mat,Mat *,int); 13242f86bd48SSatish Balay extern int MatIncreaseOverlap_MPIAIJ(Mat , int, IS *, int); 1325598137ffSSatish Balay int MatGetSubMatrices_MPIAIJ (Mat ,int , IS *,IS *,MatGetSubMatrixCall,Mat **); 13268a729477SBarry Smith /* -------------------------------------------------------------------*/ 13272ee70a88SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIAIJ, 132839e00950SLois Curfman McInnes MatGetRow_MPIAIJ,MatRestoreRow_MPIAIJ, 132944a69424SLois Curfman McInnes MatMult_MPIAIJ,MatMultAdd_MPIAIJ, 133044a69424SLois Curfman McInnes MatMultTrans_MPIAIJ,MatMultTransAdd_MPIAIJ, 1331299609e3SLois Curfman McInnes MatSolve_MPIAIJ,MatSolveAdd_MPIAIJ, 1332299609e3SLois Curfman McInnes MatSolveTrans_MPIAIJ,MatSolveTransAdd_MPIAIJ, 1333299609e3SLois Curfman McInnes MatLUFactor_MPIAIJ,0, 133444a69424SLois Curfman McInnes MatRelax_MPIAIJ, 1335b7c46309SBarry Smith MatTranspose_MPIAIJ, 1336a66be287SLois Curfman McInnes MatGetInfo_MPIAIJ,0, 1337855ac2c5SLois Curfman McInnes MatGetDiagonal_MPIAIJ,0,MatNorm_MPIAIJ, 1338ee50ffe9SBarry Smith MatAssemblyBegin_MPIAIJ,MatAssemblyEnd_MPIAIJ, 13391eb62cbbSBarry Smith 0, 1340299609e3SLois Curfman McInnes MatSetOption_MPIAIJ,MatZeroEntries_MPIAIJ,MatZeroRows_MPIAIJ, 1341299609e3SLois Curfman McInnes MatGetReordering_MPIAIJ, 1342299609e3SLois Curfman McInnes MatLUFactorSymbolic_MPIAIJ,MatLUFactorNumeric_MPIAIJ,0,0, 1343d1710a03SLois Curfman McInnes MatGetSize_MPIAIJ,MatGetLocalSize_MPIAIJ,MatGetOwnershipRange_MPIAIJ, 1344299609e3SLois Curfman McInnes MatILUFactorSymbolic_MPIAIJ,0, 13453d1612f7SBarry Smith 0,0,MatConvert_MPIAIJ,0,0,MatConvertSameType_MPIAIJ,0,0, 1346b49de8d1SLois Curfman McInnes 0,0,0, 1347598137ffSSatish Balay MatGetSubMatrices_MPIAIJ,MatIncreaseOverlap_MPIAIJ,MatGetValues_MPIAIJ,0, 1348052efed2SBarry Smith MatPrintHelp_MPIAIJ, 1349052efed2SBarry Smith MatScale_MPIAIJ}; 13508a729477SBarry Smith 13511987afe7SBarry Smith /*@C 1352ff756334SLois Curfman McInnes MatCreateMPIAIJ - Creates a sparse parallel matrix in AIJ format 13533a511b96SLois Curfman McInnes (the default parallel PETSc format). For good matrix assembly performance 13543a511b96SLois Curfman McInnes the user should preallocate the matrix storage by setting the parameters 13553a511b96SLois Curfman McInnes d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 13563a511b96SLois Curfman McInnes performance can be increased by more than a factor of 50. 13578a729477SBarry Smith 13588a729477SBarry Smith Input Parameters: 13591eb62cbbSBarry Smith . comm - MPI communicator 13607d3e4905SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 13617d3e4905SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated 13627d3e4905SLois Curfman McInnes if N is given) 13637d3e4905SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 13647d3e4905SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated 13657d3e4905SLois Curfman McInnes if n is given) 1366ab693e5aSLois Curfman McInnes . d_nz - number of nonzeros per row in diagonal portion of local submatrix 1367ff756334SLois Curfman McInnes (same for all local rows) 1368ab693e5aSLois Curfman McInnes . d_nzz - number of nonzeros per row in diagonal portion of local submatrix 1369ab693e5aSLois Curfman McInnes or null (possibly different for each row). You must leave room 1370ab693e5aSLois Curfman McInnes for the diagonal entry even if it is zero. 1371ab693e5aSLois Curfman McInnes . o_nz - number of nonzeros per row in off-diagonal portion of local 1372ab693e5aSLois Curfman McInnes submatrix (same for all local rows). 1373ab693e5aSLois Curfman McInnes . o_nzz - number of nonzeros per row in off-diagonal portion of local 1374ab693e5aSLois Curfman McInnes submatrix or null (possibly different for each row). 13758a729477SBarry Smith 1376ff756334SLois Curfman McInnes Output Parameter: 13778a729477SBarry Smith . newmat - the matrix 13788a729477SBarry Smith 1379ff756334SLois Curfman McInnes Notes: 1380ff756334SLois Curfman McInnes The AIJ format (also called the Yale sparse matrix format or 1381ff756334SLois Curfman McInnes compressed row storage), is fully compatible with standard Fortran 77 13820002213bSLois Curfman McInnes storage. That is, the stored row and column indices can begin at 13830002213bSLois Curfman McInnes either one (as in Fortran) or zero. See the users manual for details. 1384ff756334SLois Curfman McInnes 1385ff756334SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 1386ff756334SLois Curfman McInnes (possibly both). 1387ff756334SLois Curfman McInnes 13885511cfe3SLois Curfman McInnes By default, this format uses inodes (identical nodes) when possible. 13895511cfe3SLois Curfman McInnes We search for consecutive rows with the same nonzero structure, thereby 13905511cfe3SLois Curfman McInnes reusing matrix information to achieve increased efficiency. 13915511cfe3SLois Curfman McInnes 13925511cfe3SLois Curfman McInnes Options Database Keys: 13935511cfe3SLois Curfman McInnes $ -mat_aij_no_inode - Do not use inodes 13946e62573dSLois Curfman McInnes $ -mat_aij_inode_limit <limit> - Set inode limit. 13956e62573dSLois Curfman McInnes $ (max limit=5) 13966e62573dSLois Curfman McInnes $ -mat_aij_oneindex - Internally use indexing starting at 1 13976e62573dSLois Curfman McInnes $ rather than 0. Note: When calling MatSetValues(), 13986e62573dSLois Curfman McInnes $ the user still MUST index entries starting at 0! 13995511cfe3SLois Curfman McInnes 1400e0245417SLois Curfman McInnes Storage Information: 1401e0245417SLois Curfman McInnes For a square global matrix we define each processor's diagonal portion 1402e0245417SLois Curfman McInnes to be its local rows and the corresponding columns (a square submatrix); 1403e0245417SLois Curfman McInnes each processor's off-diagonal portion encompasses the remainder of the 1404e0245417SLois Curfman McInnes local matrix (a rectangular submatrix). 1405e0245417SLois Curfman McInnes 1406e0245417SLois Curfman McInnes The user can specify preallocated storage for the diagonal part of 14075ace5be8SLois Curfman McInnes the local submatrix with either d_nz or d_nnz (not both). Set 14085ace5be8SLois Curfman McInnes d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 14095ace5be8SLois Curfman McInnes memory allocation. Likewise, specify preallocated storage for the 14105ace5be8SLois Curfman McInnes off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 1411ff756334SLois Curfman McInnes 14125511cfe3SLois Curfman McInnes Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 14135511cfe3SLois Curfman McInnes the figure below we depict these three local rows and all columns (0-11). 14142191d07cSBarry Smith 1415b810aeb4SBarry Smith $ 0 1 2 3 4 5 6 7 8 9 10 11 1416b810aeb4SBarry Smith $ ------------------- 14175511cfe3SLois Curfman McInnes $ row 3 | o o o d d d o o o o o o 14185511cfe3SLois Curfman McInnes $ row 4 | o o o d d d o o o o o o 14195511cfe3SLois Curfman McInnes $ row 5 | o o o d d d o o o o o o 14205511cfe3SLois Curfman McInnes $ ------------------- 1421b810aeb4SBarry Smith $ 1422b810aeb4SBarry Smith 14235511cfe3SLois Curfman McInnes Thus, any entries in the d locations are stored in the d (diagonal) 14245511cfe3SLois Curfman McInnes submatrix, and any entries in the o locations are stored in the 14255511cfe3SLois Curfman McInnes o (off-diagonal) submatrix. Note that the d and the o submatrices are 14265511cfe3SLois Curfman McInnes stored simply in the MATSEQAIJ format for compressed row storage. 14275511cfe3SLois Curfman McInnes 14285511cfe3SLois Curfman McInnes Now d_nz should indicate the number of nonzeros per row in the d matrix, 14295511cfe3SLois Curfman McInnes and o_nz should indicate the number of nonzeros per row in the o matrix. 14305511cfe3SLois Curfman McInnes In general, for PDE problems in which most nonzeros are near the diagonal, 14313a511b96SLois Curfman McInnes one expects d_nz >> o_nz. For additional details, see the users manual 14323a511b96SLois Curfman McInnes chapter on matrices and the file $(PETSC_DIR)/Performance. 14333a511b96SLois Curfman McInnes 1434dbd7a890SLois Curfman McInnes .keywords: matrix, aij, compressed row, sparse, parallel 1435ff756334SLois Curfman McInnes 1436fafbff53SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues() 14378a729477SBarry Smith @*/ 14381eb62cbbSBarry Smith int MatCreateMPIAIJ(MPI_Comm comm,int m,int n,int M,int N, 14391eb62cbbSBarry Smith int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *newmat) 14408a729477SBarry Smith { 14418a729477SBarry Smith Mat mat; 1442416022c9SBarry Smith Mat_MPIAIJ *a; 14436abc6512SBarry Smith int ierr, i,sum[2],work[2]; 1444416022c9SBarry Smith 14458a729477SBarry Smith *newmat = 0; 14460452661fSBarry Smith PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIAIJ,comm); 1447a5a9c739SBarry Smith PLogObjectCreate(mat); 14480452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a); 1449416022c9SBarry Smith PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 145044a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 145144a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 14528a729477SBarry Smith mat->factor = 0; 1453c456f294SBarry Smith mat->assembled = PETSC_FALSE; 1454d6dfbf8fSBarry Smith 145564119d58SLois Curfman McInnes a->insertmode = NOT_SET_VALUES; 145617699dbbSLois Curfman McInnes MPI_Comm_rank(comm,&a->rank); 145717699dbbSLois Curfman McInnes MPI_Comm_size(comm,&a->size); 14581eb62cbbSBarry Smith 1459b4fd4287SBarry Smith if (m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) 14601987afe7SBarry Smith SETERRQ(1,"MatCreateMPIAIJ:Cannot have PETSc decide rows but set d_nnz or o_nnz"); 14611987afe7SBarry Smith 1462dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 14631eb62cbbSBarry Smith work[0] = m; work[1] = n; 1464d65a2f8fSBarry Smith MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm ); 1465dbd7a890SLois Curfman McInnes if (M == PETSC_DECIDE) M = sum[0]; 1466dbd7a890SLois Curfman McInnes if (N == PETSC_DECIDE) N = sum[1]; 14671eb62cbbSBarry Smith } 146817699dbbSLois Curfman McInnes if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);} 146917699dbbSLois Curfman McInnes if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);} 1470416022c9SBarry Smith a->m = m; 1471416022c9SBarry Smith a->n = n; 1472416022c9SBarry Smith a->N = N; 1473416022c9SBarry Smith a->M = M; 14741eb62cbbSBarry Smith 14751eb62cbbSBarry Smith /* build local table of row and column ownerships */ 14760452661fSBarry Smith a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 1477579c6b6fSBarry Smith PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ)); 147817699dbbSLois Curfman McInnes a->cowners = a->rowners + a->size + 1; 1479416022c9SBarry Smith MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm); 1480416022c9SBarry Smith a->rowners[0] = 0; 148117699dbbSLois Curfman McInnes for ( i=2; i<=a->size; i++ ) { 1482416022c9SBarry Smith a->rowners[i] += a->rowners[i-1]; 14838a729477SBarry Smith } 148417699dbbSLois Curfman McInnes a->rstart = a->rowners[a->rank]; 148517699dbbSLois Curfman McInnes a->rend = a->rowners[a->rank+1]; 1486416022c9SBarry Smith MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm); 1487416022c9SBarry Smith a->cowners[0] = 0; 148817699dbbSLois Curfman McInnes for ( i=2; i<=a->size; i++ ) { 1489416022c9SBarry Smith a->cowners[i] += a->cowners[i-1]; 14908a729477SBarry Smith } 149117699dbbSLois Curfman McInnes a->cstart = a->cowners[a->rank]; 149217699dbbSLois Curfman McInnes a->cend = a->cowners[a->rank+1]; 14938a729477SBarry Smith 14945ace5be8SLois Curfman McInnes if (d_nz == PETSC_DEFAULT) d_nz = 5; 1495416022c9SBarry Smith ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,n,d_nz,d_nnz,&a->A); CHKERRQ(ierr); 1496416022c9SBarry Smith PLogObjectParent(mat,a->A); 14977b8455f0SLois Curfman McInnes if (o_nz == PETSC_DEFAULT) o_nz = 0; 1498416022c9SBarry Smith ierr = MatCreateSeqAIJ(MPI_COMM_SELF,m,N,o_nz,o_nnz,&a->B); CHKERRQ(ierr); 1499416022c9SBarry Smith PLogObjectParent(mat,a->B); 15008a729477SBarry Smith 15011eb62cbbSBarry Smith /* build cache for off array entries formed */ 1502416022c9SBarry Smith ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr); 1503416022c9SBarry Smith a->colmap = 0; 1504416022c9SBarry Smith a->garray = 0; 15054b0e389bSBarry Smith a->roworiented = 1; 15068a729477SBarry Smith 15071eb62cbbSBarry Smith /* stuff used for matrix vector multiply */ 1508416022c9SBarry Smith a->lvec = 0; 1509416022c9SBarry Smith a->Mvctx = 0; 15108a729477SBarry Smith 15117a0afa10SBarry Smith /* stuff for MatGetRow() */ 15127a0afa10SBarry Smith a->rowindices = 0; 15137a0afa10SBarry Smith a->rowvalues = 0; 15147a0afa10SBarry Smith a->getrowactive = PETSC_FALSE; 15157a0afa10SBarry Smith 1516d6dfbf8fSBarry Smith *newmat = mat; 1517d6dfbf8fSBarry Smith return 0; 1518d6dfbf8fSBarry Smith } 1519c74985f6SBarry Smith 15203d1612f7SBarry Smith static int MatConvertSameType_MPIAIJ(Mat matin,Mat *newmat,int cpvalues) 1521d6dfbf8fSBarry Smith { 1522d6dfbf8fSBarry Smith Mat mat; 1523416022c9SBarry Smith Mat_MPIAIJ *a,*oldmat = (Mat_MPIAIJ *) matin->data; 152425cdf11fSBarry Smith int ierr, len,flg; 1525d6dfbf8fSBarry Smith 1526416022c9SBarry Smith *newmat = 0; 15270452661fSBarry Smith PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIAIJ,matin->comm); 1528a5a9c739SBarry Smith PLogObjectCreate(mat); 15290452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIAIJ)); CHKPTRQ(a); 1530416022c9SBarry Smith PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 153144a69424SLois Curfman McInnes mat->destroy = MatDestroy_MPIAIJ; 153244a69424SLois Curfman McInnes mat->view = MatView_MPIAIJ; 1533d6dfbf8fSBarry Smith mat->factor = matin->factor; 1534c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1535d6dfbf8fSBarry Smith 1536416022c9SBarry Smith a->m = oldmat->m; 1537416022c9SBarry Smith a->n = oldmat->n; 1538416022c9SBarry Smith a->M = oldmat->M; 1539416022c9SBarry Smith a->N = oldmat->N; 1540d6dfbf8fSBarry Smith 1541416022c9SBarry Smith a->rstart = oldmat->rstart; 1542416022c9SBarry Smith a->rend = oldmat->rend; 1543416022c9SBarry Smith a->cstart = oldmat->cstart; 1544416022c9SBarry Smith a->cend = oldmat->cend; 154517699dbbSLois Curfman McInnes a->size = oldmat->size; 154617699dbbSLois Curfman McInnes a->rank = oldmat->rank; 154764119d58SLois Curfman McInnes a->insertmode = NOT_SET_VALUES; 1548d6dfbf8fSBarry Smith 15490452661fSBarry Smith a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners); 155017699dbbSLois Curfman McInnes PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIAIJ)); 155117699dbbSLois Curfman McInnes PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int)); 1552416022c9SBarry Smith ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 15532ee70a88SLois Curfman McInnes if (oldmat->colmap) { 15540452661fSBarry Smith a->colmap = (int *) PetscMalloc((a->N)*sizeof(int));CHKPTRQ(a->colmap); 1555416022c9SBarry Smith PLogObjectMemory(mat,(a->N)*sizeof(int)); 1556416022c9SBarry Smith PetscMemcpy(a->colmap,oldmat->colmap,(a->N)*sizeof(int)); 1557416022c9SBarry Smith } else a->colmap = 0; 1558ec8511deSBarry Smith if (oldmat->garray && (len = ((Mat_SeqAIJ *) (oldmat->B->data))->n)) { 15590452661fSBarry Smith a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray); 1560464493b3SBarry Smith PLogObjectMemory(mat,len*sizeof(int)); 1561416022c9SBarry Smith PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 1562416022c9SBarry Smith } else a->garray = 0; 1563d6dfbf8fSBarry Smith 1564416022c9SBarry Smith ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 1565416022c9SBarry Smith PLogObjectParent(mat,a->lvec); 1566a56f8943SBarry Smith ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 1567416022c9SBarry Smith PLogObjectParent(mat,a->Mvctx); 1568416022c9SBarry Smith ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 1569416022c9SBarry Smith PLogObjectParent(mat,a->A); 1570416022c9SBarry Smith ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 1571416022c9SBarry Smith PLogObjectParent(mat,a->B); 15725dd7a6c7SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 157325cdf11fSBarry Smith if (flg) { 1574682d7d0cSBarry Smith ierr = MatPrintHelp(mat); CHKERRQ(ierr); 1575682d7d0cSBarry Smith } 15768a729477SBarry Smith *newmat = mat; 15778a729477SBarry Smith return 0; 15788a729477SBarry Smith } 1579416022c9SBarry Smith 1580416022c9SBarry Smith #include "sysio.h" 1581416022c9SBarry Smith 1582c456f294SBarry Smith int MatLoad_MPIAIJ(Viewer bview,MatType type,Mat *newmat) 1583416022c9SBarry Smith { 1584d65a2f8fSBarry Smith Mat A; 1585416022c9SBarry Smith int i, nz, ierr, j,rstart, rend, fd; 1586d65a2f8fSBarry Smith Scalar *vals,*svals; 1587416022c9SBarry Smith PetscObject vobj = (PetscObject) bview; 1588416022c9SBarry Smith MPI_Comm comm = vobj->comm; 1589416022c9SBarry Smith MPI_Status status; 159017699dbbSLois Curfman McInnes int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 1591d65a2f8fSBarry Smith int *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols; 1592d65a2f8fSBarry Smith int tag = ((PetscObject)bview)->tag; 1593416022c9SBarry Smith 159417699dbbSLois Curfman McInnes MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 159517699dbbSLois Curfman McInnes if (!rank) { 1596416022c9SBarry Smith ierr = ViewerFileGetDescriptor_Private(bview,&fd); CHKERRQ(ierr); 1597416022c9SBarry Smith ierr = SYRead(fd,(char *)header,4,SYINT); CHKERRQ(ierr); 1598c456f294SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIAIJ:not matrix object"); 1599416022c9SBarry Smith } 1600416022c9SBarry Smith 1601416022c9SBarry Smith MPI_Bcast(header+1,3,MPI_INT,0,comm); 1602416022c9SBarry Smith M = header[1]; N = header[2]; 1603416022c9SBarry Smith /* determine ownership of all rows */ 160417699dbbSLois Curfman McInnes m = M/size + ((M % size) > rank); 16050452661fSBarry Smith rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 1606416022c9SBarry Smith MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm); 1607416022c9SBarry Smith rowners[0] = 0; 160817699dbbSLois Curfman McInnes for ( i=2; i<=size; i++ ) { 1609416022c9SBarry Smith rowners[i] += rowners[i-1]; 1610416022c9SBarry Smith } 161117699dbbSLois Curfman McInnes rstart = rowners[rank]; 161217699dbbSLois Curfman McInnes rend = rowners[rank+1]; 1613416022c9SBarry Smith 1614416022c9SBarry Smith /* distribute row lengths to all processors */ 16150452661fSBarry Smith ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens); 1616416022c9SBarry Smith offlens = ourlens + (rend-rstart); 161717699dbbSLois Curfman McInnes if (!rank) { 16180452661fSBarry Smith rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths); 1619416022c9SBarry Smith ierr = SYRead(fd,rowlengths,M,SYINT); CHKERRQ(ierr); 16200452661fSBarry Smith sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 162117699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i]; 1622d65a2f8fSBarry Smith MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm); 16230452661fSBarry Smith PetscFree(sndcounts); 1624416022c9SBarry Smith } 1625416022c9SBarry Smith else { 1626416022c9SBarry Smith MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm); 1627416022c9SBarry Smith } 1628416022c9SBarry Smith 162917699dbbSLois Curfman McInnes if (!rank) { 1630416022c9SBarry Smith /* calculate the number of nonzeros on each processor */ 16310452661fSBarry Smith procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 1632cddf8d76SBarry Smith PetscMemzero(procsnz,size*sizeof(int)); 163317699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 1634416022c9SBarry Smith for ( j=rowners[i]; j< rowners[i+1]; j++ ) { 1635416022c9SBarry Smith procsnz[i] += rowlengths[j]; 1636416022c9SBarry Smith } 1637416022c9SBarry Smith } 16380452661fSBarry Smith PetscFree(rowlengths); 1639416022c9SBarry Smith 1640416022c9SBarry Smith /* determine max buffer needed and allocate it */ 1641416022c9SBarry Smith maxnz = 0; 164217699dbbSLois Curfman McInnes for ( i=0; i<size; i++ ) { 16430452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 1644416022c9SBarry Smith } 16450452661fSBarry Smith cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 1646416022c9SBarry Smith 1647416022c9SBarry Smith /* read in my part of the matrix column indices */ 1648416022c9SBarry Smith nz = procsnz[0]; 16490452661fSBarry Smith mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 1650d65a2f8fSBarry Smith ierr = SYRead(fd,mycols,nz,SYINT); CHKERRQ(ierr); 1651d65a2f8fSBarry Smith 1652d65a2f8fSBarry Smith /* read in every one elses and ship off */ 165317699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1654d65a2f8fSBarry Smith nz = procsnz[i]; 1655416022c9SBarry Smith ierr = SYRead(fd,cols,nz,SYINT); CHKERRQ(ierr); 1656d65a2f8fSBarry Smith MPI_Send(cols,nz,MPI_INT,i,tag,comm); 1657d65a2f8fSBarry Smith } 16580452661fSBarry Smith PetscFree(cols); 1659416022c9SBarry Smith } 1660416022c9SBarry Smith else { 1661416022c9SBarry Smith /* determine buffer space needed for message */ 1662416022c9SBarry Smith nz = 0; 1663416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1664416022c9SBarry Smith nz += ourlens[i]; 1665416022c9SBarry Smith } 16660452661fSBarry Smith mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 1667416022c9SBarry Smith 1668416022c9SBarry Smith /* receive message of column indices*/ 1669d65a2f8fSBarry Smith MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 1670416022c9SBarry Smith MPI_Get_count(&status,MPI_INT,&maxnz); 1671c456f294SBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJ:something is wrong with file"); 1672416022c9SBarry Smith } 1673416022c9SBarry Smith 1674416022c9SBarry Smith /* loop over local rows, determining number of off diagonal entries */ 1675cddf8d76SBarry Smith PetscMemzero(offlens,m*sizeof(int)); 1676416022c9SBarry Smith jj = 0; 1677416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1678416022c9SBarry Smith for ( j=0; j<ourlens[i]; j++ ) { 1679d65a2f8fSBarry Smith if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 1680416022c9SBarry Smith jj++; 1681416022c9SBarry Smith } 1682416022c9SBarry Smith } 1683d65a2f8fSBarry Smith 1684d65a2f8fSBarry Smith /* create our matrix */ 1685416022c9SBarry Smith for ( i=0; i<m; i++ ) { 1686416022c9SBarry Smith ourlens[i] -= offlens[i]; 1687416022c9SBarry Smith } 1688d65a2f8fSBarry Smith ierr = MatCreateMPIAIJ(comm,m,PETSC_DECIDE,M,N,0,ourlens,0,offlens,newmat);CHKERRQ(ierr); 1689d65a2f8fSBarry Smith A = *newmat; 1690d65a2f8fSBarry Smith MatSetOption(A,COLUMNS_SORTED); 1691d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1692d65a2f8fSBarry Smith ourlens[i] += offlens[i]; 1693d65a2f8fSBarry Smith } 1694416022c9SBarry Smith 169517699dbbSLois Curfman McInnes if (!rank) { 16960452661fSBarry Smith vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals); 1697416022c9SBarry Smith 1698416022c9SBarry Smith /* read in my part of the matrix numerical values */ 1699416022c9SBarry Smith nz = procsnz[0]; 1700416022c9SBarry Smith ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr); 1701d65a2f8fSBarry Smith 1702d65a2f8fSBarry Smith /* insert into matrix */ 1703d65a2f8fSBarry Smith jj = rstart; 1704d65a2f8fSBarry Smith smycols = mycols; 1705d65a2f8fSBarry Smith svals = vals; 1706d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1707d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1708d65a2f8fSBarry Smith smycols += ourlens[i]; 1709d65a2f8fSBarry Smith svals += ourlens[i]; 1710d65a2f8fSBarry Smith jj++; 1711416022c9SBarry Smith } 1712416022c9SBarry Smith 1713d65a2f8fSBarry Smith /* read in other processors and ship out */ 171417699dbbSLois Curfman McInnes for ( i=1; i<size; i++ ) { 1715416022c9SBarry Smith nz = procsnz[i]; 1716416022c9SBarry Smith ierr = SYRead(fd,vals,nz,SYSCALAR); CHKERRQ(ierr); 1717d65a2f8fSBarry Smith MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 1718416022c9SBarry Smith } 17190452661fSBarry Smith PetscFree(procsnz); 1720416022c9SBarry Smith } 1721d65a2f8fSBarry Smith else { 1722d65a2f8fSBarry Smith /* receive numeric values */ 17230452661fSBarry Smith vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals); 1724416022c9SBarry Smith 1725d65a2f8fSBarry Smith /* receive message of values*/ 1726d65a2f8fSBarry Smith MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 1727d65a2f8fSBarry Smith MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 1728c456f294SBarry Smith if (maxnz != nz) SETERRQ(1,"MatLoad_MPIAIJ:something is wrong with file"); 1729d65a2f8fSBarry Smith 1730d65a2f8fSBarry Smith /* insert into matrix */ 1731d65a2f8fSBarry Smith jj = rstart; 1732d65a2f8fSBarry Smith smycols = mycols; 1733d65a2f8fSBarry Smith svals = vals; 1734d65a2f8fSBarry Smith for ( i=0; i<m; i++ ) { 1735d65a2f8fSBarry Smith ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 1736d65a2f8fSBarry Smith smycols += ourlens[i]; 1737d65a2f8fSBarry Smith svals += ourlens[i]; 1738d65a2f8fSBarry Smith jj++; 1739d65a2f8fSBarry Smith } 1740d65a2f8fSBarry Smith } 17410452661fSBarry Smith PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners); 1742d65a2f8fSBarry Smith 1743d65a2f8fSBarry Smith ierr = MatAssemblyBegin(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1744d65a2f8fSBarry Smith ierr = MatAssemblyEnd(A,FINAL_ASSEMBLY); CHKERRQ(ierr); 1745416022c9SBarry Smith return 0; 1746416022c9SBarry Smith } 1747